Started by upstream project "OpenCOR_macOS" build number 1150 originally caused by: GitHub pull request #2411 of commit 37ad4a231f543cbb07cf454d49bf6e3632420ce6, no merge conflicts. Running as SYSTEM Building remotely on Mac10.12.3_OpenCOR (MacOS) in workspace /Users/opencor/jenkins/workspace/OpenCOR_macOS/Slave/Mac10.12.3_OpenCOR The recommended git tool is: NONE No credentials specified > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/opencor/opencor.git # timeout=10 Fetching upstream changes from https://github.com/opencor/opencor.git > git --version # timeout=10 > git --version # 'git version 2.21.1 (Apple Git-122.3)' > git fetch --tags --force --progress -- https://github.com/opencor/opencor.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10 JENKINS-19022: warning: possible memory leak due to Git plugin usage; see: https://wiki.jenkins.io/display/JENKINS/Remove+Git+Plugin+BuildsByBranch+BuildData Checking out Revision 73dc874228caa227f4a552084e75900f925d5ce4 (refs/remotes/origin/pr/2411/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 73dc874228caa227f4a552084e75900f925d5ce4 # timeout=10 Commit message: "Merge 37ad4a231f543cbb07cf454d49bf6e3632420ce6 into 5a13167dbd47e74e0941dbd65e6e387cff31c258" > git rev-list --no-walk 5bb36d5e851164db53130eb125a6653c47d02376 # timeout=10 [Mac10.12.3_OpenCOR] $ /bin/sh -xe /var/folders/l6/vl0kwwgd4d70c5ft0svm52r80000gr/T/jenkins3159327791806616087.sh ++ git log + msg='commit 73dc874228caa227f4a552084e75900f925d5ce4 Merge: 5a13167db 37ad4a231 Author: Alan Garny Date: Fri Oct 16 11:59:28 2020 +1300 Merge 37ad4a231f543cbb07cf454d49bf6e3632420ce6 into 5a13167dbd47e74e0941dbd65e6e387cff31c258 commit 37ad4a231f543cbb07cf454d49bf6e3632420ce6 Author: Alan Garny Date: Fri Oct 16 11:59:21 2020 +1300 Just for testing Jenkins [006]. commit 17ded538fdb481ca80e26056d4c8f7505a1d30d0 Author: Alan Garny Date: Fri Oct 16 11:57:48 2020 +1300 Just for testing Jenkins [005]. commit 237d70fe8d96fdc82d23459ae2e2e901ce7223d1 Author: Alan Garny Date: Fri Oct 16 11:48:34 2020 +1300 Just for testing Jenkins [004]. commit 3993aa16c22d2768eba371a0cfbc8072cd8f56a8 Author: Alan Garny Date: Fri Oct 16 11:41:40 2020 +1300 Just for testing Jenkins [003]. commit 52b8cc7a915916406b7e3fc9eaa8dd5e757f2d55 Author: Alan Garny Date: Fri Oct 16 11:39:35 2020 +1300 Just for testing Jenkins [002]. commit c2002a62634275f254e28f3af85dedc87c965fe8 Author: Alan Garny Date: Fri Oct 16 11:36:11 2020 +1300 Just for testing Jenkins [001]. commit 5a13167dbd47e74e0941dbd65e6e387cff31c258 Merge: d5b932fe7 b5bf6b18f Author: Alan Garny Date: Mon Oct 12 12:37:38 2020 +1300 SUNDIALS: upgrade to version 5.4.0 (#2407). commit b5bf6b18f0275e55126bfbfbb84ce8552ae51f06 Author: Alan Garny Date: Mon Oct 12 11:51:48 2020 +1300 Slight update to our downloads page (#2407). commit 32e93cc4562349ab8fdef026ed48da5b874c562d Author: Alan Garny Date: Mon Oct 12 11:49:41 2020 +1300 SUNDIALS: binaries for version 5.4 (#2407). commit 04cf919b20bfdb588fda9680f3c8e4c3001348c4 Author: Alan Garny Date: Mon Oct 12 11:40:08 2020 +1300 SUNDIALS: upgraded to version 5.4 (#2407). commit d5b932fe71c5c979f14dcd7c42c3b6ba69fe3a28 Merge: 9d89e203c 0344ecb5e Author: Alan Garny Date: Fri Sep 25 17:54:54 2020 +1200 Cleaning up. commit 0344ecb5e55d656fdb4293ccfd311e9b34645784 Author: Alan Garny Date: Fri Sep 25 16:57:49 2020 +1200 Some minor cleaning up. commit 91e17e07d9b1aacf40a89be5762f653b7846c958 Author: Alan Garny Date: Fri Sep 25 16:53:32 2020 +1200 Tool bar widget: enforce the use of a parent. commit fe7d19ee0009a64b42a879d989fab8feee39a231 Author: Alan Garny Date: Fri Sep 25 16:52:56 2020 +1200 Busy widget: changed the signature of its constructor. To be in line with what we do elsewhere. commit 9d89e203c8e423f62d72c66eb4f987af3f3635b0 Merge: d1457da1c 3959f2f25 Author: Alan Garny Date: Wed Sep 23 17:44:01 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target (closes #2402). Some third-party libraries haven'\''t been updated since they were built under macOS 10.14. This means that whenever they get updated, they will be fine if they are being built using CMake, but not fine if they are built in a different way (e.g. with `configue`/`make`). So, we will need to update the building process for those third-party libraries so that we do something to what we have done for `src/plugins/thirdParty/OpenSSL/CMakeLists.txt` (i.e. use something like `-mmacosx-version-min=${CMAKE_OSX_DEPLOYMENT_TARGET}`). commit 3959f2f25adf4e756ecd51cfc2ffd3223eb75c0c Author: Alan Garny Date: Wed Sep 23 16:26:25 2020 +1200 macOS: updated some third-party binaries (#2402). commit 17ca4514c113f0df8fbf4fb26573776fd3f3c6bf Author: Alan Garny Date: Wed Sep 23 16:07:02 2020 +1200 macOS: updated some third-party binaries (#2402). commit 0d0617f7aab8fde667ad7e50e531165a0ba2905d Author: Alan Garny Date: Wed Sep 23 10:45:57 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target (#2402). commit d1457da1c5a2c61755b4fa45e978b8633de4bc6b Merge: d687dc464 abad678cf Author: Alan Garny Date: Wed Sep 23 10:33:23 2020 +1200 OpenSSL: upgrade to version 1.1.1h (closes #2399). commit abad678cf3bb41a0bdbc4d1382852622e35bf27b Author: Alan Garny Date: Wed Sep 23 09:36:42 2020 +1200 Slight update to our downloads page (#2399). commit 0fa55f091b7ceef41947fe588303eed085748540 Author: Alan Garny Date: Wed Sep 23 09:35:29 2020 +1200 OpenSSL: binaries for version 1.1.1h (#2399). commit bcc1c8a5ddd78c851b9c18fad7fdc1df3ce53f3d Author: Alan Garny Date: Wed Sep 23 09:14:18 2020 +1200 OpenSSL: upgraded to version 1.1.1h (#2399). commit d687dc464aa9e8efe9b5e3e491cf5e87b2dc8f71 Merge: 6e65d4d63 503456e76 Author: Alan Garny Date: Fri Aug 21 18:22:51 2020 +1200 Zinc widget: improved/fixed various things. commit 503456e7620abcff7297998136761358af9da5ff Author: Alan Garny Date: Fri Aug 21 16:49:23 2020 +1200 Zinc widget: fixed our reset() method. We didn'\''t need to call QOpenGLWidget::context()->create() after all! commit 5f801ae305cb5d6283428617f99642ef20b6d2b4 Author: Alan Garny Date: Fri Aug 21 15:11:18 2020 +1200 Some minor cleaning up. commit 95eb294f305bd5357b3559fe302b3c3214cff44b Author: Alan Garny Date: Fri Aug 21 14:31:20 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. Don'\''t use a timer after all... since we now have a call to `resizeEvent()` rather than a couple to `resize()`. commit d58a68448b10ef0bc7bf288ae5b6c8207581eb40 Author: Alan Garny Date: Fri Aug 21 14:18:15 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. commit 5f73676e0440fb2448021750e5c4bcbf5343e4b1 Author: Alan Garny Date: Fri Aug 21 12:17:23 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. Now use a timer to check for a change in the device pixel ratio value. Also did some minor cleaning up. commit 97d2ce7402892e6ecaef0d91fce92e6ab03fe20a Author: Alan Garny Date: Fri Aug 21 11:28:53 2020 +1200 Some minor cleaning up. commit d10bc711b1b2f1c692a0f0dd697f431d2ad0d0dc Author: Alan Garny Date: Fri Aug 21 11:00:02 2020 +1200 Zinc widget: added a way to retrieve the FPS. commit 6e65d4d63eeb3582bfa0343daf261a8b6a8f5605 Author: Alan Garny Date: Wed Aug 19 15:18:56 2020 +1200 Some minor cleaning up. commit 86010b4f03dd3c81b56c04721a89c1433e38220a Merge: 590e8894c 58891bae3 Author: Alan Garny Date: Wed Aug 19 15:14:14 2020 +1200 Improved Zinc support. commit 58891bae3f0bfe155a89b2bc114967703c9e484c Author: Alan Garny Date: Wed Aug 19 14:37:02 2020 +1200 Some minor cleaning up. commit 69f94ce9bdd34dc21eed7b33b03c3a19f54d88b8 Author: Alan Garny Date: Wed Aug 19 14:32:41 2020 +1200 Zinc window: various improvements. - Can show/hide axes, points, lines, surfaces and isosurfaces; and - Can load (an)other Zinc mesh file(s). commit cdb8213f8dcd896a6100ecec6be732593af50019 Author: Alan Garny Date: Wed Aug 19 14:31:26 2020 +1200 Zinc widget: various improvements. - Support for a context menu; - Default white background; - Support for resetting the widget; and - Improved support for high DPI. commit 590e8894c39282243535334d8f19850d5618c3dc Merge: 24f71e56b e52730b4e Author: Alan Garny Date: Tue Aug 18 17:37:59 2020 +1200 Some minor cleaning up. commit e52730b4e8c1504dddfa69d28891b31c8e1d982a Author: Alan Garny Date: Tue Aug 18 16:59:50 2020 +1200 Some minor cleaning up. commit 24f71e56b7e3645ee6c1e4189191072620f656db Merge: d2d08172e 7b64a430f Author: Alan Garny Date: Tue Aug 18 13:39:43 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit 7b64a430f2857dcefb41a765d904d84368f2e7cc Author: Alan Garny Date: Tue Aug 18 11:49:19 2020 +1200 Some minor cleaning up. commit 1fb2d0acfd0609e62e205774d0831f241a2874b5 Author: Alan Garny Date: Tue Aug 18 11:35:48 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit d2d08172eb37edf72475a76f90d9300832c351f5 Author: Alan Garny Date: Mon Aug 17 13:03:02 2020 +1200 Some minor cleaning up. commit 3bfcf86430fe27d9f457c89497a14b28d6b124fc Author: Alan Garny Date: Fri Aug 14 18:10:17 2020 +1200 Some minor cleaning up. commit 0f08c4bccf3656dc2d94cbbba38e6d238918f9ea Merge: deb5b82e9 71a6078b8 Author: Alan Garny Date: Fri Aug 14 10:35:46 2020 +1200 Zinc: don'\''t allocate our Zinc context on the heap. See the square-bracket comment at #2369 (comment). commit 71a6078b87656fbbd02287b69fefa8300d416c25 Author: Alan Garny Date: Fri Aug 14 09:58:25 2020 +1200 Zinc: don'\''t allocate our Zinc context on the heap. See the square-bracket comment at https://github.com/opencor/opencor/issues/2369#issuecomment-673350896. commit deb5b82e906d5420f7be63d36fe7950c490375d3 Author: Alan Garny Date: Thu Aug 13 16:19:49 2020 +1200 Fixed a typo. commit 7c9fe2c27b8463311b2c11c87179035f1f6b989a Merge: 5993f9f14 dbebe3e58 Author: Alan Garny Date: Thu Aug 13 13:42:05 2020 +1200 Zinc window: some minor improvements. commit dbebe3e58cb8560b5167e6ac5520022f3ef2d2ba Author: Alan Garny Date: Thu Aug 13 12:21:14 2020 +1200 Zinc window: keep a temporary copy of our .exfile file. commit ee98ba2be7d0eb52aa6945855461c6de4206e695 Author: Alan Garny Date: Thu Aug 13 12:19:32 2020 +1200 Zinc window: skip createAndSetZincContext() when closing OpenCOR. commit 5993f9f144fc44d6819502209c3317b90003c57f Merge: 3295700d3 d6d67a04b Author: Alan Garny Date: Wed Aug 12 20:41:30 2020 +1200 Made Clang-Tidy happy. commit d6d67a04bf8d8440616bdb962526788d38417d5d Author: Alan Garny Date: Wed Aug 12 18:18:03 2020 +1200 Make Clang-Tidy happy. commit 8263da36185a70d15654f0fe63137ea0bdf4ecf7 Author: Alan Garny Date: Wed Aug 12 15:58:38 2020 +1200 Some minor cleaning up. commit 3295700d3e92ec2944e1e887589adb36ce1edcf6 Merge: 999457f65 540120998 Author: Alan Garny Date: Wed Aug 12 00:41:56 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 (closes #2371). commit 540120998a31d2ee8f1157047531e8bb61943d88 Merge: 27a79c8af 999457f65 Author: Alan Garny Date: Wed Aug 12 00:01:41 2020 +1200 Merge branch '\''master'\'' into issue2371. commit 999457f65ffba70fd167ec8910602edf7e6ec70b Merge: 7035b6117 da0992711 Author: Alan Garny Date: Wed Aug 12 00:00:10 2020 +1200 Varis improvements to our tests. commit da0992711cc9cfe7ebef5a72c0c109dfb4786d66 Author: Alan Garny Date: Tue Aug 11 22:54:06 2020 +1200 Don'\''t make external processes time out. commit f5347c818099cd8d57e92ca2b6487c42590a6a0a Author: Alan Garny Date: Tue Aug 11 17:01:31 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit a4864f0fe109cbbe9bc0651c60c027134f3a3bf3 Author: Alan Garny Date: Tue Aug 11 16:44:31 2020 +1200 Core tests: we need our MathML tests to use QTEST_GUILESS_MAIN() on Windows. Otherwise, we get something like: ``` ********* Start testing of MathmlTests ********* Config: Using QtTest library 5.12.9, Qt 5.12.9 (x86_64-little_endian-llp64 shared (dynamic) debug build; by MSVC 2017) PASS : MathmlTests::initTestCase() QFATAL : MathmlTests::plusTests() ASSERT: "!m_baseURI.isRelative()" in file environment\qgenericstaticcontext.cpp, line 82 FAIL! : MathmlTests::plusTests() Received a fatal error. Unknown file(0) : failure location Totals: 1 passed, 1 failed, 0 skipped, 0 blacklisted, 91ms ********* Finished testing of MathmlTests ********* ``` commit 3da6f4997e19efb4346bedf699e59874c4837b80 Author: Alan Garny Date: Tue Aug 11 14:12:04 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 0480536a12b543e76fddd98aeafd8c51372ca31f Author: Alan Garny Date: Tue Aug 11 12:32:55 2020 +1200 Some minor cleaning up. commit f22483b3766df0e7d2827375d163d6bdc56a5e50 Author: Alan Garny Date: Tue Aug 11 11:55:40 2020 +1200 Some minor cleaning up. commit 31741f88fbc099e894c57d28bf8a3fa084add328 Author: Alan Garny Date: Tue Aug 11 00:06:29 2020 +1200 Revert "Core: slight improvement to our MathML tests." This reverts commit e22409987af5bb83081999f9cd24fa9ccca8845f. commit e22409987af5bb83081999f9cd24fa9ccca8845f Author: Alan Garny Date: Tue Aug 11 00:04:44 2020 +1200 Core: slight improvement to our MathML tests. commit 13b5ab781674fb7f2f7af49d4b509a34c5422af7 Author: Alan Garny Date: Mon Aug 10 19:41:49 2020 +1200 Make CodeFactor happy. commit 993984d0fed308257602c4a26bd804626010e6ac Author: Alan Garny Date: Mon Aug 10 19:29:08 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit a92008c7f538baa9232ad1e7f2fead3b39d7fdb4 Author: Alan Garny Date: Mon Aug 10 19:07:39 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 901996717ea0bb29c263d37f739d21d1e62557d5 Author: Alan Garny Date: Mon Aug 10 18:56:22 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 552e5aaeaaa11aef454496742dd08e5ee8a4551d Author: Alan Garny Date: Mon Aug 10 18:39:06 2020 +1200 Some minor cleaning up. commit ef3a639afdd76b281ac5c68878ab0686efe20383 Author: Alan Garny Date: Mon Aug 10 18:38:53 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 14ae94e5a936ddf7332da4c36b12eefae50ed0e8 Author: Alan Garny Date: Mon Aug 10 17:12:51 2020 +1200 Some minor cleaning up. commit 0e30b06c30b95488159ddbb1c70cd91745d1061e Author: Alan Garny Date: Mon Aug 10 17:06:13 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit b476b7f1d5721646f6a6c29f6a8a387ac59e1bf6 Author: Alan Garny Date: Mon Aug 10 12:08:31 2020 +1200 Revert "clcachewrapper: don'\''t escape double quotes since we only use paths with no spaces." This reverts commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac. commit c22068da6e1873424b49c9424f019303eb858a8a Author: Alan Garny Date: Sat Aug 8 13:36:01 2020 +1200 Tests: wherever possible, use QTEST_APPLESS_MAIN() rather than QTEST_GUILESS_MAIN(). commit 27a79c8af8184f81e87368b060d904342f3c6745 Author: Alan Garny Date: Thu Aug 6 21:30:41 2020 +1200 Slight update to our downloads pages (#2371). commit 457f5d8fc96ea32180e7f6169bfb8b6a5d15f13d Author: Alan Garny Date: Thu Aug 6 21:28:17 2020 +1200 LLVM-Clang: binaries for version 10.0.1 (#2371). commit b1a90ec3e13cc923352141e75b19209cc8dc60e2 Author: Alan Garny Date: Thu Aug 6 17:09:21 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 (#2371). commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac Author: Alan Garny Date: Sun Jul 5 11:54:41 2020 +1200 clcachewrapper: don'\''t escape double quotes since we only use paths with no spaces. commit 7f94f451095e63ca5222499a9f8b481326e8bfc2 Merge: 6990b24c3 3b22f4731 Author: Alan Garny Date: Wed Jul 1 16:29:26 2020 +1200 Qwt: upgraded to version 6.1.5 (closes #2365). commit 3b22f4731b020543712cc7faef04faa4683f36d4 Merge: 3485a019b 6990b24c3 Author: Alan Garny Date: Wed Jul 1 15:43:08 2020 +1200 Merge branch '\''master'\'' into issue2365. commit 6990b24c34168c3861396a5dff51d46326be483c Merge: f09e0e9ad 3b8fd35ab Author: Alan Garny Date: Wed Jul 1 15:42:19 2020 +1200 QScintilla: upgraded to version 2.11.5 (closes #2364). commit 3485a019b83f4a537034d72ac8f69717d0fb69ac Author: Alan Garny Date: Wed Jul 1 15:24:47 2020 +1200 Slight update to our downloads pages (#2365). commit c8305cd7f53811c5cf36f3a4933a88707a309dc9 Author: Alan Garny Date: Wed Jul 1 15:24:28 2020 +1200 Qwt: binaries for version 6.1.5 (#2365). commit d78200ed6847944dc5be6d49d36ad6ea288c7550 Author: Alan Garny Date: Wed Jul 1 15:09:09 2020 +1200 Qwt: upgraded to version 6.1.5 (#2365). commit 3b8fd35abffa38d776cb02291af9a2d32a578923 Merge: 9bf99ab82 f09e0e9ad Author: Alan Garny Date: Wed Jul 1 15:03:03 2020 +1200 Merge branch '\''master'\'' into issue2364. commit f09e0e9ad24993a9738362badea13afe4228ad7b Merge: f8e03df6c c07e75092 Author: Alan Garny Date: Wed Jul 1 15:02:21 2020 +1200 Mesa: upgraded to version 20.1.2 (closes #2363). commit 9bf99ab82692e2caa664316e247616c7478363d4 Author: Alan Garny Date: Wed Jul 1 14:50:46 2020 +1200 Slight update to our downloads pages (#2364). commit 842fc76582ec9d06864bfcc6fed64d105ae6de28 Author: Alan Garny Date: Wed Jul 1 14:47:56 2020 +1200 QScintilla: binaries for version 2.11.5 (#2364). commit 027e382df4dba671c559d895fa0abe8012d3a921 Author: Alan Garny Date: Wed Jul 1 14:38:20 2020 +1200 QScintilla: upgraded to version 2.11.5 (#2364). commit c07e750925a77e2ea673d68bb4da2e482997e214 Author: Alan Garny Date: Wed Jul 1 14:25:43 2020 +1200 Mesa: binary for version 20.1.2 (#2363). commit b7a2fb8538e65c012dc799af4c5e70ffaf71c826 Author: Alan Garny Date: Wed Jul 1 14:10:05 2020 +1200 Revert "Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (#2358)." This reverts commit 1e7a08f264dd449a1752306ed6837fcae18e763f. Indeed, we STILL need to know whether we are building OpenCOR with Python support, in case we need to build ONLY a third-party library (e.g. Mesa). commit c6c4b6d91ae48bfb05aca20940b75b9923811b6c Author: Alan Garny Date: Wed Jul 1 13:42:46 2020 +1200 Mesa: upgrade to version 20.1.2 (#2363). commit f8e03df6ccff94f632b7d91841b68d51fecf53bf Author: Alan Garny Date: Fri Jun 19 15:42:53 2020 +1200 Properly retrieve OpenCOR'\''s date. Oops, at some point we added an "\n" to the version file, which means that retrieving the last item returned an empty string...! commit f2cbf85c3987e72075a4bef5c78022dfff903d1a Merge: 7fd1280a2 168b40985 Author: Alan Garny Date: Fri Jun 19 14:23:25 2020 +1200 New snapshot. commit 168b4098575781b40587e6f2c57a959a0538dd3d Author: Alan Garny Date: Fri Jun 19 12:56:48 2020 +1200 New snapshot. commit 7fd1280a2ad97548cc8bdf5c2b5a2f4a4cea2269 Merge: 75d571005 1e7a08f26 Author: Alan Garny Date: Fri Jun 19 12:55:26 2020 +1200 Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (closes #2358). commit 1e7a08f264dd449a1752306ed6837fcae18e763f Author: Alan Garny Date: Fri Jun 19 12:25:39 2020 +1200 Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (#2358). commit 75d57100514a07a77f91fd6b48225cd6ce72ba47 Merge: 7c3b22342 03244d904 Author: Alan Garny Date: Fri Jun 19 12:24:03 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 (closes #2359). commit 03244d904eafad2f07c1f3741aeca785aae2087c Author: Alan Garny Date: Fri Jun 19 11:24:11 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 (#2359). commit 7c3b2234235e4cdab84cd3641a534367f95eaf0c Author: Alan Garny Date: Thu Jun 18 17:38:07 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (#2354). commit 83777d3a249a68f37dbf03ea90664f814e4c9d9a Merge: 2f10cedf0 03dd0d7bb Author: Alan Garny Date: Thu Jun 18 17:21:23 2020 +1200 Linux: deploy libffi.so.6 (closes #2353). commit 03dd0d7bb2c0259561a730af67fbc89ca6326167 Author: Alan Garny Date: Thu Jun 18 16:51:16 2020 +1200 Linux: deploy libffi.so.6 (#2353). commit 2f10cedf0f1f7d070736f0668edbf0d1abf18843 Merge: 5a4ec4ed0 e7a3fbf78 Author: Alan Garny Date: Thu Jun 18 13:26:50 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (closes #2354). commit e7a3fbf7842866c9247d5df86dba78be11b3b611 Merge: 49fcbb1b2 5a4ec4ed0 Author: Alan Garny Date: Thu Jun 18 12:57:34 2020 +1200 Merge branch '\''master'\'' into issue2354. commit 5a4ec4ed06a237ee8cb97128c247cf642ccb7d0a Merge: a35cd9ab7 35bdbd595 Author: Alan Garny Date: Thu Jun 18 12:55:58 2020 +1200 Cleaning up. commit 49fcbb1b2bb8e200b5d637e6b2352dea8fa61544 Author: Alan Garny Date: Thu Jun 18 12:28:28 2020 +1200 Some minor cleaning up. commit 8826a39803591f7180b58fb59e96d657f4818677 Author: Alan Garny Date: Thu Jun 18 12:28:21 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (#2354). commit 35bdbd59536fb6fa25e8ced57acf0272bc081b39 Author: Alan Garny Date: Thu Jun 18 11:39:06 2020 +1200 Revert "Unneeded plugins." This reverts commit d785793f64abd650721aa31d4ccb231809e19d8a. commit d785793f64abd650721aa31d4ccb231809e19d8a Author: Alan Garny Date: Wed Jun 17 17:59:24 2020 +1200 Unneeded plugins. At least, they don'\''t seem to be needed anymore. commit 857cd1f85881ac5a35f26e1db8cd6684d304ab9a Author: Alan Garny Date: Wed Jun 17 16:46:22 2020 +1200 OpenSSL: new macOS binary. Not sure what happened, but our previous binary wasn'\''t working on macOS 10.13, only macOS 10.14 and 10.15...!? (macOS 10.13 claims that OpenSSL was built for macOS 10.15.) commit d0702f63748da26c6c930795a49355c5bbf96c79 Author: Alan Garny Date: Wed Jun 17 16:43:21 2020 +1200 Qt WebKit: new Linux binary. This is a revert of commit b45dfd332 where we built Qt WebKit with a special RPATH value, which we don'\''t need. commit 66d8722dede0893fdf5067842bc71f6587fffe55 Author: Alan Garny Date: Wed Jun 17 16:33:26 2020 +1200 Linux: libffi.so.6 is needed by Python (well, NumPy), not Qt WebKit. Yet, there is no point in shipping it since it'\''s not one of "our" files that needs libffi.so.6. Our solution may be to upgrade NumPy. Will have to see... commit b45dfd33287a6407ada7f047734925831318970b Author: Alan Garny Date: Wed Jun 17 15:59:43 2020 +1200 Qt WebKit: new Linux binary. On Ubuntu 20.04, we now need access to libffi.so.6! commit 85d83a8034c6a8f805fe48abbac939cd2fbb9f64 Author: Alan Garny Date: Wed Jun 17 14:51:12 2020 +1200 Qt WebKit: new macOS binary. Not sure what happened, but our previous binary wasn'\''t working on macOS 10.13, only macOS 10.14 and 10.15...!? (macOS 10.13 claims that Qt WebKit was built for macOS 10.15.) commit a35cd9ab7d3fa43e5ba9679f6dbdb9bdee2fb1e0 Merge: e3b172cd8 a4df8db11 Author: Alan Garny Date: Wed Jun 17 09:36:46 2020 +1200 New snapshot. commit a4df8db1184e5b974aa51a1a49cce097f5d55953 Author: Alan Garny Date: Wed Jun 17 08:57:36 2020 +1200 New snapshot. commit e3b172cd874f5e277d49a91befacf68dcc6f675f Merge: 950f55422 4ddecf941 Author: Alan Garny Date: Mon Jun 15 17:45:54 2020 +1200 Some minor cleaning up. commit 4ddecf9416d631620d13ff8ba95e088773c8d975 Author: Alan Garny Date: Mon Jun 15 17:08:23 2020 +1200 Some minor cleaning up. commit 950f5542239adf00a8b707a2e75810aff2877b90 Merge: 52c155bd0 71c0acbfd Author: Alan Garny Date: Mon Jun 15 14:12:57 2020 +1200 Cleaning up. commit 71c0acbfdde5cb32a9468c4a3bdb10f72d145118 Author: Alan Garny Date: Mon Jun 15 13:36:02 2020 +1200 Some minor cleaning up. commit 33c6cd5d98462988b535e24b2efc9f8cde2659bc Author: Alan Garny Date: Sun Jun 14 16:00:22 2020 +1200 Some minor cleaning up. commit 6f9bd7c9b862b7b59ad0e5f817815314339bfbf0 Author: Alan Garny Date: Sun Jun 14 15:50:26 2020 +1200 Some minor cleaning up. commit 57ed29a3fbc4822afce35b475cb562665152e52a Author: Alan Garny Date: Sun Jun 14 15:36:16 2020 +1200 Some minor cleaning up. commit a0e0b715c4e409ed921fd79e06f492b0bcb930ef Author: Alan Garny Date: Sun Jun 14 15:35:00 2020 +1200 Some minor cleaning up. commit af4affc677c29157d5144a9d2ab214a9ebfdde81 Author: Alan Garny Date: Sun Jun 14 15:33:25 2020 +1200 Some minor cleaning up. commit cd8d81fc76cc46dbc97df4c0dfd68c3c9fcc999a Author: Alan Garny Date: Sun Jun 14 15:22:04 2020 +1200 Some minor cleaning up. commit f4797eafe5017f1e6f97e60064fcdd01440505e5 Author: Alan Garny Date: Sun Jun 14 14:18:54 2020 +1200 Some minor cleaning up. commit c5c2c2c701e848109ac83e1911d5db437c7a6a3b Author: Alan Garny Date: Sun Jun 14 14:15:59 2020 +1200 Some minor cleaning up. commit ca22dd814730dfbdc1e294c70dab49f4de5bf9b3 Author: Alan Garny Date: Sun Jun 14 13:27:01 2020 +1200 Some minor cleaning up. commit d1c387820e2a93110fbecd87625fcc742eb6c925 Author: Alan Garny Date: Sun Jun 14 13:23:49 2020 +1200 Some minor cleaning up. commit afd99931fc1473bacf2439f5fb39e2784bc8f222 Author: Alan Garny Date: Sun Jun 14 13:17:32 2020 +1200 Some minor cleaning up. commit eda680fcd77a5dae58458f1d872475939540b093 Author: Alan Garny Date: Fri Jun 12 18:22:15 2020 +1200 Some minor cleaning up. commit 52c155bd02c3f3c18fd39e634b131dfd9c7f9273 Merge: 8bf7a1ef7 8db859df3 Author: Alan Garny Date: Fri Jun 5 16:36:35 2020 +1200 libgit2: upgraded to version 1.0.1 (closes #2348). commit 8db859df305051db3ba020b8ac4e63b80aefd155 Author: Alan Garny Date: Fri Jun 5 09:13:12 2020 +1200 Slight update to our downloads page (#2348). commit af3fe65ab5445a795bd1cdd87845a8c160b43d83 Author: Alan Garny Date: Fri Jun 5 08:57:21 2020 +1200 libgit2: binaries for version 1.0.1 (#2348). commit bea92b0cc734c78131e6fbc89cdf7c599a1d30db Author: Alan Garny Date: Fri Jun 5 08:49:22 2020 +1200 libgit2: upgraded to version 1.0.1 (#2348). commit 8bf7a1ef7b31331aacd356df8fa1e162b282de3e Merge: 1f1da792f 9cbbb7370 Author: Alan Garny Date: Sun May 31 13:14:15 2020 +1200 libgit2: upgrade to version 0.28.5 (closes #2346). commit 9cbbb7370fb99dce64c496ac71d1ab71c3d9972b Author: Alan Garny Date: Sun May 31 12:50:11 2020 +1200 PMR support: ported (back) our libgit2-related code to version 0.28.5 (#2305). commit 71ddf9e2cf8f61ea61732c93039922c37b6495f8 Author: Alan Garny Date: Sun May 31 12:44:25 2020 +1200 Slight update to our downloads page (#2346). commit 53cc0c12b8298989c618c90f0e246cd1d659fb07 Author: Alan Garny Date: Sun May 31 12:43:18 2020 +1200 libgit2: binaries for version 0.28.5 (#2346). commit b3a222572951ff5ba06c775f3d29acc6d67318dd Author: Alan Garny Date: Sun May 31 12:31:33 2020 +1200 libgit2: upgraded to version 0.28.5 (#2346). commit 1f1da792f27a3ed203cc5dd6b2f940204daeeba7 Merge: 357e5345c 6f71bfee8 Author: Alan Garny Date: Tue May 26 18:50:56 2020 +1200 SUNDIALS: upgraded to version 5.3.0 (closes #2344). commit 6f71bfee8a519ee344f026b4318dfc03cdcf6688 Author: Alan Garny Date: Tue May 26 18:06:34 2020 +1200 Slight update to our downloads page (#2344). commit a5d44d865def80031b51935163ef52a17484b393 Author: Alan Garny Date: Tue May 26 18:05:29 2020 +1200 SUNDIALS: binaries for version 5.3.0 (#2344). commit 18fd583dd4bc300b4d9b871732f0bb8bfe12de2e Author: Alan Garny Date: Tue May 26 17:58:18 2020 +1200 SUNDIALS: upgraded to version 5.3.0 (#2344). commit 357e5345c21c2a32da94bbf51cbc9061282cb5ce Merge: 5747f9d00 2a26b250d Author: Alan Garny Date: Fri May 15 17:29:12 2020 +1200 Mesa: upgraded to version 20.0.7 (closes #2342). commit 2a26b250d3ab1d10b56161565b3b5ba01f0c5f75 Author: Alan Garny Date: Fri May 15 16:41:46 2020 +1200 Slight update to our downloads page (#2342). commit 68caa9fc6e566d14661e8788a4b3a23f5f828ab0 Merge: 977ce4012 5747f9d00 Author: Alan Garny Date: Fri May 15 16:39:59 2020 +1200 Merge branch '\''master'\'' into issue2342. commit 5747f9d006ced6283f7f9126a42e5205e71e753b Merge: c80d70e03 c76ee1185 Author: Alan Garny Date: Fri May 15 16:39:06 2020 +1200 libgit2: upgraded to version 1.0.0 (closes #2340). commit 977ce4012e26d5ce09024bff0172448d99ae3e08 Author: Alan Garny Date: Fri May 15 16:02:25 2020 +1200 Mesa: binary for version 20.0.7 (#2342). commit 3040e95d2914bdaf461c35992d161c7348c06c4a Author: Alan Garny Date: Fri May 15 15:54:15 2020 +1200 Mesa: upgraded to version 20.0.7 (#2342). commit c76ee1185756c92fe85d29e92bcbedd66e402b9e Author: Alan Garny Date: Fri May 15 15:42:15 2020 +1200 Slight update to our downloads page (#2340). commit 81022ef9dd9c34fcbec805bc993adbdb45769daf Author: Alan Garny Date: Fri May 15 15:42:02 2020 +1200 libgit2: binaries for version 1.0.0 (#2340). commit 51992b84d4225372d1ad3fb1696d29dd7dd47a8e Author: Alan Garny Date: Fri May 15 15:25:14 2020 +1200 libgit2: upgraded to version 1.0.0 (#2340). commit c80d70e0346672b28df54720bea2fe2d9a560ee8 Merge: b91bc8425 856777886 Author: Alan Garny Date: Fri May 15 15:04:41 2020 +1200 jQuery: upgraded to version 3.5.1 (closes #2338). commit 8567778864b8e5972fa0c797eed380f6cf2428b0 Author: Alan Garny Date: Fri May 15 14:38:35 2020 +1200 Slight update to our downloads page (#2338). commit d3c2544b8ab3f0a50fabbb8142db24f6db9b5bd6 Author: Alan Garny Date: Fri May 15 14:36:51 2020 +1200 jQuery: upgraded to version 3.5.1 (#2338). commit b91bc84254d9eb5bba5b0186cad0557b9be694ec Merge: 622139c56 3c55e6254 Author: Alan Garny Date: Tue May 12 14:17:27 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object (closes #2336). commit 3c55e625489387673b067cb6697cf4fcc7006546 Author: Alan Garny Date: Tue May 12 13:23:43 2020 +1200 Slight update to our downloads page (#2336). commit f30d20688d19e4b3de675bffc4a2b075273d57d8 Author: Alan Garny Date: Tue May 12 13:19:43 2020 +1200 Slight reordering of our CellML variable type (#2336). Just so that the order looks "better". commit 5559289a1f8ece9976c7ac5710c359cf3397db7a Author: Alan Garny Date: Tue May 12 13:13:45 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object (#2336). commit 622139c56990ceb7833d0db1a14af9bc2b2a5edf Merge: d2535c38b 66f01fbcf Author: Alan Garny Date: Mon May 4 14:05:29 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit 66f01fbcfc9aaf0bbf0a63650faa020e83092853 Author: Alan Garny Date: Mon May 4 13:18:26 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit d2535c38b2e13bfeb2472138a4620591c8a46214 Merge: e64c399c8 14a447c89 Author: Alan Garny Date: Sat Apr 25 19:06:31 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches (#2332). commit 14a447c893e83ed31b3ce6f2656c8878ffe979aa Author: Alan Garny Date: Sat Apr 25 18:00:33 2020 +1200 Slight update to our downloads page (#2332). commit 5536aa7a2188a71af74c253b877908804c65a51a Author: Alan Garny Date: Sat Apr 25 17:59:12 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches (#2332). commit e64c399c81f12a02da02bf6327119c3c3c223fcc Merge: 0aca40edc c864195f4 Author: Alan Garny Date: Wed Apr 22 15:23:59 2020 +1200 CellML Annotation view: can'\''t look up a resource or an id anymore?! (closes #2190). commit c864195f4130249f8b7ade893371a34857dac9f8 Merge: 9ddccda5e 0aca40edc Author: Alan Garny Date: Wed Apr 22 14:57:02 2020 +1200 Merge branch '\''master'\'' into issue2190 commit 9ddccda5ec64fe9b389fb1464ef5a3b86110f3c6 Author: Alan Garny Date: Wed Apr 22 14:55:44 2020 +1200 Merge branch '\''master'\'' into issue2190. commit a19d95172df7fbdbf2e03591d198810c4206905a Author: Alan Garny Date: Wed Apr 22 14:52:40 2020 +1200 Slight update to our downloads page (#2190). commit fc2f03a3cd8994eef4b556106facb99aa8fb988f Author: Alan Garny Date: Wed Apr 22 14:49:20 2020 +1200 Some minor cleaning up. commit 0aca40edc7c208a2c5415cc646c7449c6003c8fe Merge: 8323419f2 0987196ad Author: Alan Garny Date: Wed Apr 22 13:07:58 2020 +1200 OpenSSL: upgraded to version 1.1.1g (closes #2326). commit 0987196ad61638161cd53605378e8027eeedec0e Author: Alan Garny Date: Wed Apr 22 09:10:20 2020 +1200 Slight update to our downloads page (#2326). commit d7153c1c1a6ba7f37553cd0fa1bcb1aaf61a0bbe Author: Alan Garny Date: Wed Apr 22 09:10:06 2020 +1200 OpenSSL: binaries for version 1.1.1g (#2326). commit 6837bbf7a03fcf4e1d87c56724b9c13eedb1ec89 Author: Alan Garny Date: Wed Apr 22 08:39:45 2020 +1200 OpenSSL: upgraded to version 1.1.1g (#2326). commit 8323419f27260424c26c2045833c00099c3cd746 Merge: 5136211dc dc57483d3 Author: Alan Garny Date: Tue Apr 21 17:44:02 2020 +1200 SUNDIALS: upgraded to version 5.2.0 (closes #2322). commit dc57483d3059f1d2c2f9a43c6ad180d98d21aa84 Author: Alan Garny Date: Tue Apr 21 17:13:59 2020 +1200 Slight update to our downloads page (#2322). commit dfa0b24b3a73e6e1a7a21a5c39f4b11b734aed6b Author: Alan Garny Date: Tue Apr 21 17:13:48 2020 +1200 SUNDIALS: binaries for version 5.2.0 (#2322). commit f0247410e4a36ac64acda1b446c9e53bc2cd908d Author: Alan Garny Date: Tue Apr 21 17:01:24 2020 +1200 SUNDIALS: upgraded to version 5.2.0 (#2322). commit 6acaaf3e0f181ea55e877d6622e18ddc8d95f0b6 Merge: bcf2ef76b 5136211dc Author: Alan Garny Date: Thu Apr 9 18:23:30 2020 +1200 Merge branch '\''master'\'' into issue2190. commit 5136211dc69710e55256a2f725ec3b1cf17734ab Author: Alan Garny Date: Thu Apr 9 18:22:50 2020 +1200 Some minor cleaning up. commit bcf2ef76b8b70583310bba52b4dfe5362bc6777c Merge: b8d9e28ee e4b938a97 Author: Alan Garny Date: Thu Apr 9 17:37:24 2020 +1200 Merge branch '\''master'\'' into issue2190. commit e4b938a9721899c52dbfe16e424e467f7a4afdfc Author: Alan Garny Date: Thu Apr 9 17:35:36 2020 +1200 Added the 2019-12-20 snapshot. For some reasons, it got removed... by mistake, I imagine! commit b8d9e28ee795307f611547fab25e97568729768a Merge: 60e37baa1 cdacb2dc4 Author: Alan Garny Date: Wed Apr 8 10:28:24 2020 +1200 Merge branch '\''master'\'' into issue2190. commit cdacb2dc448e07c7d1375281ff6cef07532ab8ae Author: Alan Garny Date: Wed Apr 8 10:27:37 2020 +1200 Make it possible to run a debug version of OpenCOR from within Qt Creator. commit 60e37baa10461118890bea6aaf596061f02fe125 Author: Alan Garny Date: Fri Apr 3 12:02:56 2020 +1300 Some minor cleaning up. commit 37135d7b13a00113843e2e4bb1c7cb6c0620c5bb Author: Alan Garny Date: Fri Apr 3 11:49:15 2020 +1300 CellML Annotation view: updated our use of identifiers.org (#2190). commit 47354444a9b8c7da8f4496b471f2909ee8c82dd2 Merge: 046d54b05 9c2c8985a Author: Alan Garny Date: Thu Apr 2 18:31:33 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 (closes #2314). commit 9c2c8985ad90e4d6aed6717b716b3d72e764d894 Author: Alan Garny Date: Thu Apr 2 17:30:02 2020 +1300 Use the C++14 standard for both our main executable and all our plugins (#2314). We need support for the C++14 standard so that we can use LLVM+Clang 10.0.0. So, technically speaking, our main executable doesn'\''t need that support, only our plugins that directyle or indirectly rely on LLVM+Clang. commit 248ff7ac47ad41240492812cdcccae92fee072e1 Author: Alan Garny Date: Thu Apr 2 10:54:29 2020 +1300 Compiler: account for clang::CompilerInvocation::CreateFromArgs()'\''s new signature (#2314). commit 95d321008e5396a5abec16723d1a3191d384567e Author: Alan Garny Date: Wed Apr 1 23:09:27 2020 +1300 Slight update to our downloads page (#2314). commit c0da74d04dbba41934a500c04b0e803faa78b39c Author: Alan Garny Date: Wed Apr 1 23:04:34 2020 +1300 LLVM+Clang: binaries for version 10.0.0 (#2314). commit 097e34c62634d883b88b290eabb84e528c02e6c0 Author: Alan Garny Date: Wed Apr 1 18:49:04 2020 +1300 LLVM+Clang: binaries for version 10.0.0 (#2314). commit b66a1be21f53b567a81bbe4ef356d4429ac74084 Author: Alan Garny Date: Wed Apr 1 13:40:51 2020 +1300 LLVM+Clang: handle new options / remove old options (#2314). Partly reverted commit 6f30b98d3 (#2314). Indeed, those options were listed when doing a `ccmake`, but they are not actually used afterwards...!? As confirmed by `cmake -LA`. commit 6f30b98d35de582f53ec2749ffd288d7eb45bb2e Author: Alan Garny Date: Wed Apr 1 13:06:00 2020 +1300 LLVM+Clang: handle new options / remove old options (#2314). commit 62afa82e6873e16524613f0d011c5f77b5510f52 Merge: 47ed2cdbe 046d54b05 Author: Alan Garny Date: Wed Apr 1 11:44:25 2020 +1300 Merge branch '\''master'\'' into issue2314. commit 046d54b0558d90cd73569bcff8917007111b7305 Merge: 2a07b83ae 3e682debc Author: Alan Garny Date: Wed Apr 1 11:43:29 2020 +1300 OpenSSL: upgraded to version 1.1.1f (closes #2318). commit 3e682debc192aeae2b863051cb6bfee095cbbf1d Author: Alan Garny Date: Wed Apr 1 10:12:03 2020 +1300 Slight update to our downloads page (#2318). commit 5de9a85afd64cd70cd48c48a2eab9a5457a4938e Author: Alan Garny Date: Wed Apr 1 10:11:43 2020 +1300 OpenSSL: binaries for version 1.1.1f (#2318). commit eab7c142b07f9b37966d63caadf9d041dc3ebf64 Author: Alan Garny Date: Wed Apr 1 09:47:36 2020 +1300 OpenSSL: upgraded to version 1.1.1f (#2318). commit 47ed2cdbe9ee61ed45d475db15d295d37ed6bf7d Author: Alan Garny Date: Tue Mar 31 10:46:58 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 (#2314). commit 2a07b83ae6b66247a6f554054e71abd8b7a4c181 Merge: e08a46833 16eeba596 Author: Alan Garny Date: Mon Mar 30 22:19:19 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 (closes #2309). commit 16eeba59684f4ecf06db55f226b1b08d6468f688 Author: Alan Garny Date: Mon Mar 30 21:50:14 2020 +1300 QtWebKit: binaries for version 5.212.0 Alpha 4 (#2309). commit 43abcf852f05e0852f91e28377936a344fa789c2 Author: Alan Garny Date: Sat Mar 28 19:25:22 2020 +1300 QtWebKit: slight update to our README.rst file. commit 6d8a4328d8ed3485ce4006a3bd79cc220853fecd Author: Alan Garny Date: Sat Mar 28 19:22:38 2020 +1300 QtWebKit: Python 3.x is now needed to build the library (#2309). commit 890702a4f98bc6ef9f742ef793fab48a580182d5 Author: Alan Garny Date: Sat Mar 28 19:21:57 2020 +1300 QtWebKit: slight updates to our prerequisites to building the library. commit 2c254f0a2c66a63a755d35b2fdb4fcddabd79cdf Author: Alan Garny Date: Sat Mar 28 19:18:27 2020 +1300 QtWebKit: Python 3 is now needed to build the library (#2309). commit b82f9bd4302c668a4c5be4146bc40c0296d07b19 Author: Alan Garny Date: Fri Mar 27 16:20:03 2020 +1300 QtWebKit: use the PORT option to build the library (#2309). commit 350f42f6928768b51056f393f85f4c1f81205b0b Author: Alan Garny Date: Fri Mar 27 09:13:55 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 (#2309). commit e08a468335e831b7dc89280aa9e191d83d891f7d Merge: 5100976da f33e14152 Author: Alan Garny Date: Thu Mar 26 19:07:06 2020 +1300 QScintilla: upgraded to version 2.11.4 (closes #2307). commit f33e1415247192ce76842f484fae54fa9fd4ed0b Author: Alan Garny Date: Thu Mar 26 18:15:08 2020 +1300 Slight update to our downloads page (#2307). commit 207da208484266835a2d85e736216feb80147cf4 Author: Alan Garny Date: Thu Mar 26 18:14:52 2020 +1300 QScintilla: binaries for version 2.11.4 (#2307). commit 651faf190b4217092fe3bca4bf1cd6ddd30e4ecb Author: Alan Garny Date: Thu Mar 26 18:05:43 2020 +1300 QScintilla: upgraded to version 2.11.4 (#2307). commit 5100976daed63908e9f1004e78c2c8cc5516001c Merge: ddd99e05a fa667974b Author: Alan Garny Date: Thu Mar 26 16:59:35 2020 +1300 OpenSSL: upgraded to version 1.1.1e (closes #2310). commit fa667974bcb5d5ee367109060cabc86dda30cd31 Author: Alan Garny Date: Thu Mar 26 16:07:38 2020 +1300 Slight update to our downloads page (#2310). commit 044eae571edcf9350684ccf7d472d3eddc1e72a8 Author: Alan Garny Date: Thu Mar 26 16:07:18 2020 +1300 OpenSSL: binaries for version 1.1.1e (#2310). commit ecb636c38d67a993946534776adbccaa0a8e485c Merge: 9abf84843 ddd99e05a Author: Alan Garny Date: Thu Mar 26 15:42:22 2020 +1300 Merge branch '\''master'\'' into issue2310. commit ddd99e05a5d7ae9673f0183c9cb5382cab0bde24 Merge: f88280ef7 db48daaf8 Author: Alan Garny Date: Thu Mar 26 15:41:07 2020 +1300 libgit2: upgraded to version 0.99.0 (closes #2305). commit db48daaf8edb982e1178a0038dd23ec2e11fa561 Author: Alan Garny Date: Thu Mar 26 15:04:33 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit d62b159cf95730acf113362664b86adbb1f70600 Author: Alan Garny Date: Thu Mar 26 14:54:11 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit 24b0ba037206a215f72a98d39d20e67de526d4ac Author: Alan Garny Date: Thu Mar 26 14:51:08 2020 +1300 libgit2: version 0.99.0 now requires the major version in the filename (#2305). commit 9abf8484362885a2e05129fe68fc3c470fe73480 Author: Alan Garny Date: Thu Mar 26 11:56:53 2020 +1300 OpenSSL: upgraded to version 1.1.1e (#2310). commit 8302b448af2a130677a0ec80630e8c43dc6512d8 Author: Alan Garny Date: Mon Mar 23 16:02:06 2020 +1300 Slight update to our downloads page (#2305). commit 83995ad1f7a379f1a9d6264c4a0cd4ef95ce4b82 Author: Alan Garny Date: Mon Mar 23 15:58:39 2020 +1300 PMR support: ported our libgit2-related code to version 0.99.0 (#2305). commit 37b1a2f7620b9c3b0923e022baf2bcb50f6e2896 Author: Alan Garny Date: Mon Mar 23 15:57:54 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit 2c2d2f7fabb6fd53ae1e7dd630e0c0831de207eb Author: Alan Garny Date: Mon Mar 23 15:40:22 2020 +1300 libgit2: upgraded to version 0.99.0 (#2305). commit f88280ef7a3af68a80a9192aabf44ce96b175e5d Merge: 9fdcb0c94 b71947729 Author: Alan Garny Date: Mon Mar 23 10:59:32 2020 +1300 Mesa: upgraded to version 20.0.2 (#2311), commit b719477298de6a73e2e9f17313d77a8aa5c8582c Author: Alan Garny Date: Mon Mar 23 10:10:02 2020 +1300 Slight update to our downloads page (#2311). commit f24976785885a2d32cd88875dd1eccf751d90e2e Author: Alan Garny Date: Mon Mar 23 10:08:56 2020 +1300 Mesa: binary for version 20.0.2 (#2311). commit dfe3536cf056a8b41e8e63a88413953b9f022b6c Author: Alan Garny Date: Mon Mar 23 10:00:11 2020 +1300 Mesa: upgraded to version 20.0.2 (#2311). commit 9fdcb0c94b7f28616ed45b93bf9311d1442b3863 Merge: 90b09d1d5 9c7a1c400 Author: Alan Garny Date: Fri Feb 28 18:31:33 2020 +1300 Mesa: upgraded to version 20.0.0 (closes #2306). commit 9c7a1c400c37801ce53b1d3e05881a1301baccc7 Author: Alan Garny Date: Fri Feb 28 16:16:52 2020 +1300 Slight updates to our downloads pages (#2306). commit 9545a3258818aecf318c35905adc66fc0310041e Author: Alan Garny Date: Fri Feb 28 16:14:23 2020 +1300 Mesa: binary for version 20.0.0 (#2306). commit 9d2a803781ed9ce352f58bce3bc2190345adb922 Author: Alan Garny Date: Fri Feb 28 16:02:15 2020 +1300 Mesa: upgraded to version 20.0.0 (#2306). commit 90b09d1d5b27e48ab35d0552b34d890612f0339a Merge: f4aded802 db1dd56da Author: Alan Garny Date: Thu Feb 20 15:00:35 2020 +1300 Some minor cleaning up. commit db1dd56da6255014e932259b9e8b1cb0b2c44f5b Author: Alan Garny Date: Thu Feb 20 14:08:28 2020 +1300 Slight update to our Jupyter notebook. So that it can use our new Python interface! commit c323d79e1b70210d8c1c19db6945e4bea1906275 Author: Alan Garny Date: Thu Feb 20 13:32:02 2020 +1300 Slight changes to our Lorenz SED-ML file / COMBINE archive. commit f4aded802e29eb508b751348ab6c1fdffc676d1a Merge: 74a7e9b41 e98727d0d Author: Alan Garny Date: Fri Feb 14 16:03:25 2020 +1300 New snapshot. commit e98727d0d4d83893a13e02636b9a708f5bec0961 Author: Alan Garny Date: Fri Feb 14 15:31:53 2020 +1300 New snapshot. commit 74a7e9b41700f373c867693c788241500bd73ed3 Merge: df56c43cf a3edca5f6 Author: Alan Garny Date: Fri Feb 14 15:29:39 2020 +1300 CellML support: improved the generation of runtime (closes #2285). commit a3edca5f60d4a93c08a232361034e495701609ff Author: Alan Garny Date: Fri Feb 14 14:51:34 2020 +1300 Slight updates to our downloads and what is new pages (#2285). commit 0e2319f882243f58ad048bad8b27f21e4cbd0907 Author: Alan Garny Date: Fri Feb 14 14:45:38 2020 +1300 Reverted part of commits 7dce10c34, 683f9df4b, f3da3f05c, 616d61b86 and 264b434a2. commit dc7098830546dc39e91e03a20919f6bac97f6607 Merge: 264b434a2 df56c43cf Author: Alan Garny Date: Thu Feb 13 17:55:10 2020 +1300 Merge branch '\''master'\'' into issue2285. commit df56c43cf118584aa928b28f028097a240de6a79 Merge: ece521b4e 41b8f9110 Author: Alan Garny Date: Thu Feb 13 17:54:32 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs (closes #2299). commit 41b8f9110e7b6276d8c66881eb27b43c31693969 Author: Alan Garny Date: Thu Feb 13 17:24:42 2020 +1300 Slight update to our downloads page (#2299). commit e1874e473876f3ea036fb642a5e4970f95e51ea5 Author: Alan Garny Date: Thu Feb 13 17:23:29 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs (#2299). We used to compare using qIsNull() and then, at some point, we replaced it with qFuzzyCompare() which ought to be the correct way of doing things except that it doesn'\''t work with NAN (and probably INF) values. At least, not in release mode (yes, everything works fine in debug mode!), so we are now also checking for INF and NAN values. commit 264b434a225958d1fa1bd9ac930ea4d05e17c2a2 Author: Alan Garny Date: Thu Feb 13 15:23:40 2020 +1300 Plugins dialog: make categories checkable if they contain selectable plugins. This is part of our work on issue #2285. commit 616d61b86c792acea70a7b3a23112111dc2ab99f Author: Alan Garny Date: Thu Feb 13 15:00:41 2020 +1300 Plugins dialog: show/hide non-selectable plugins. This is part of our work on issue #2285. commit af3b6c48fd9c5129fa097250a91293e1c339edc1 Author: Alan Garny Date: Thu Feb 13 14:40:03 2020 +1300 Some minor cleaning up. commit f3da3f05c05fe1806d24176c454fff2ceb9faf12 Author: Alan Garny Date: Wed Feb 12 18:00:31 2020 +1300 Plugins/preferences dialog: make sure that, the first time round, the description is correct. This is part of our work on issue #2285. commit 683f9df4b18244271e5d0fd2a11bbef8722fd910 Author: Alan Garny Date: Wed Feb 12 17:15:35 2020 +1300 Plugins dialog: make sure that we can see the check boxes and icons. This is part of our work on issue #2285. commit dbc87b32f55316fc1d2a324100628c6a9e53817a Author: Alan Garny Date: Wed Feb 12 16:42:23 2020 +1300 Some minor cleaning up. commit 7dce10c342edaf48b73ffa0064a07ce1936629a9 Author: Alan Garny Date: Wed Feb 12 15:26:06 2020 +1300 Plugins and preferences dialog: improved our use of tree views. This is part of our work on issue #2285. commit 5215a3848fb0ff66885d7ca8dc6eb54db75fa7e9 Author: Alan Garny Date: Mon Feb 10 17:53:54 2020 +1300 Some minor cleaning up. commit d49e2bd8f7f52008424a48324a3ba2d7e32a9dbd Merge: cb0237f84 ece521b4e Author: Alan Garny Date: Mon Feb 10 16:51:49 2020 +1300 Merge branch '\''master'\'' into issue2285. commit ece521b4ee54e51bbe6bf82295b7e76082a364e5 Merge: 6d212ca3b 2083b26d6 Author: Alan Garny Date: Mon Feb 10 16:51:09 2020 +1300 Graph Panel widget: fixed a small problem that resulted in the legend being misplaced when exporting a graph panel (closes #2297). commit 2083b26d668e27c6c1f1df3618ef695d4b6244a6 Author: Alan Garny Date: Mon Feb 10 16:19:33 2020 +1300 Slight update to or downloads page (#2297). commit b9dc7194004dc8573d52f1d40ccd151c9c88983d Author: Alan Garny Date: Mon Feb 10 16:14:47 2020 +1300 Graph Panel widget: fixed an issue that resulted in the legend being misplaced when exporting a graph panel (#2297). commit badc44dae18b0eb9b36a3583c5662f90469bfc1d Author: Alan Garny Date: Mon Feb 10 11:12:50 2020 +1300 Some minor cleaning up. commit cb0237f84b1f84c98d818193b578f8f30fee5935 Author: Alan Garny Date: Wed Feb 5 17:30:00 2020 +1300 Some minor cleaning up. commit 0945f1df4e7a84039755d95541f35592cb441062 Author: Alan Garny Date: Wed Feb 5 17:11:25 2020 +1300 CellML support: improved the speed with which we update our runtime (#2285). commit 32caa507baa3ba9975dc955bce59338a95ab75e1 Merge: cfad002dd 6d212ca3b Author: Alan Garny Date: Wed Feb 5 16:08:42 2020 +1300 Merge branch '\''master'\'' into issue2285. commit 6d212ca3b84c1471bd730727e0374ef5d2f9be49 Merge: e0dcdb50a 7c3a13ead Author: Alan Garny Date: Wed Feb 5 16:06:59 2020 +1300 Some minor cleaning up. commit 7c3a13eadadab13924da73172f74027c62a52091 Author: Alan Garny Date: Wed Feb 5 15:18:37 2020 +1300 Some minor cleaning up. commit fce9896abf2b7d6c62a94bce9890b1acdfd24217 Author: Alan Garny Date: Wed Feb 5 14:53:54 2020 +1300 Reverted part of commit 0c9e02cf3. I did a bit too much cleaning up! commit cfad002dd04c2ddae1a867a40182c737f1de5482 Merge: e682da9a1 e0dcdb50a Author: Alan Garny Date: Wed Feb 5 14:13:08 2020 +1300 Merge branch '\''master'\'' into issue2285. commit db573dfaef78253f3f20e6aba5f593f2e998c215 Merge: e682da9a1 e0dcdb50a Author: Alan Garny Date: Wed Feb 5 14:12:44 2020 +1300 Merge branch '\''master'\'' into cleaning-up. commit e682da9a1a17ae74802617a19a0eae8e3f985081 Author: Alan Garny Date: Wed Feb 5 14:09:51 2020 +1300 Some minor cleaning up. commit f6075c33825e31991b455d8e93336f7397439d23 Author: Alan Garny Date: Wed Feb 5 14:00:34 2020 +1300 Some minor cleaning up. commit 776b7f936b210dc06200184aa4aba82394924799 Author: Alan Garny Date: Wed Feb 5 13:51:55 2020 +1300 Some minor cleaning up. commit 1d552c27a53697f54b96d788978ee707f53e2307 Author: Alan Garny Date: Wed Feb 5 13:32:32 2020 +1300 Some minor cleaning up. commit 549a4ecf810c9d12075e4dac718721c38eba6fcb Author: Alan Garny Date: Wed Feb 5 13:14:46 2020 +1300 Some minor cleaning up. commit 0c9e02cf333377d787e4e3dd6a28485d7380e88c Author: Alan Garny Date: Wed Feb 5 13:13:57 2020 +1300 Some minor cleaning up. commit e0dcdb50a34078f65d37a17929f6250ed3ef2317 Merge: e94033e73 dc121d836 Author: Alan Garny Date: Wed Feb 5 11:55:48 2020 +1300 Cleaning up. commit dc121d836021aaaf2e77fad6624d7b5947dcfc43 Author: Alan Garny Date: Tue Feb 4 17:36:41 2020 +1300 Some minor cleaning up. commit 4edb0305b9ac0823ec240e58d3ad23487faa81f4 Author: Alan Garny Date: Tue Feb 4 17:21:41 2020 +1300 Some minor cleaning up. commit 889a50558acb681bf4b10dd87dea35501e6b3f35 Author: Alan Garny Date: Tue Feb 4 16:21:26 2020 +1300 Some minor cleaning up. commit 31a7df4c0df5acf7674f7fdf8931fa12716a6528 Author: Alan Garny Date: Tue Feb 4 16:13:16 2020 +1300 Some minor cleaning up. commit 23d4c2f088b27b63083b801541274b0b44401883 Author: Alan Garny Date: Tue Feb 4 14:49:35 2020 +1300 Some minor cleaning up. commit ab8b775f19253fe3088407d56f176dc0478afc6f Author: Alan Garny Date: Tue Feb 4 11:26:13 2020 +1300 Some minor cleaning up. commit 18c008ec0f361eb0c63cd0e45ada93eacdc155bb Author: Alan Garny Date: Tue Feb 4 11:24:39 2020 +1300 Some minor cleaning up. commit 6309d4a8f8373a9db16c4f66fcca7a2746312f90 Author: Alan Garny Date: Tue Feb 4 10:52:03 2020 +1300 Some minor cleaning up. commit e94033e73a746c8464a95c5fdf3f926b9f33e05e Merge: 9eda69688 968153727 Author: Alan Garny Date: Tue Feb 4 09:34:28 2020 +1300 CellML Text view: greatly reduced the time and memory required to do syntax highlighting (closes #2284). commit 968153727a9c592b5d4db077be7d87b18ab57eb5 Author: Alan Garny Date: Mon Feb 3 17:52:06 2020 +1300 Slight updates to our downloads and what is new pages (#2284). commit 6f685ee9a878f4656e0d6d60614af8bc3ba3d45b Author: Alan Garny Date: Mon Feb 3 17:46:32 2020 +1300 Some minor cleaning up. commit 7396401b5bacdd594730b4e7c3795d8df4094a90 Author: Alan Garny Date: Mon Feb 3 17:39:24 2020 +1300 Some minor cleaning up. commit f4330e97ed8915ef0e21ef19bc3295f92ed128cd Author: Alan Garny Date: Mon Feb 3 17:19:39 2020 +1300 CellML Text view: improved our lexer by not keeping track of both a QString and a QByteArray version of our full text (#2284). We are only dealing with the QByteArray version, which means that we don'\''t have to convert QByteArrays to QStrings anymore (in fullTextPosition()), something that was very time consuming. This also resulted in a lot of cleaning up and of minor speedups here and there. commit 21239582b49561cb54200265ce41316d9bf3a9e4 Author: Alan Garny Date: Fri Jan 31 12:35:47 2020 +1300 Some minor cleaning up. commit ac0d29f911a3660c28ab5395540f2c46d0c2b0c1 Author: Alan Garny Date: Fri Jan 31 12:21:56 2020 +1300 CellML Text view: slight improvements to our lexer (#2284). commit 0216e99a430b54f206d9950abf2364ad385f414f Author: Alan Garny Date: Fri Jan 31 12:04:52 2020 +1300 Some minor cleaning up. commit 51f6a97744f5c612f21761d3100a49e9534249e3 Author: Alan Garny Date: Fri Jan 31 11:08:59 2020 +1300 Some minor cleaning up. commit c3ce2ac4837cb46f529e44be9f84009ef8dd3863 Author: Alan Garny Date: Fri Jan 31 10:59:01 2020 +1300 CellML Text view: slight improvements to our lexer (#2284). Also some minor cleaning up. commit 81bb8c1488367539e4e2ce19e54f81bc68bb3ad7 Author: Alan Garny Date: Fri Jan 31 10:01:27 2020 +1300 CellML Text view: some minor refactoring of our lexer code (#2284). commit d73a54485c01208eb7684bf82517850ddecdd7c0 Author: Alan Garny Date: Fri Jan 31 09:53:07 2020 +1300 CellML Text view: increased the size of chunk of text to style (#2284). commit 7f6a53f93d31df99243aae1b0fe7d7cceb4c126d Author: Alan Garny Date: Fri Jan 31 09:35:45 2020 +1300 Some minor cleaning up. commit 64610d43be70e308db0bfd6d52a88f00ef8e767e Author: Alan Garny Date: Thu Jan 30 18:11:26 2020 +1300 CellML Text view: style a CellML file in chunks (#2284). This means that for very big CellML file we don'\''t end up with OpenCOR using GBs of RAM. commit b7b8acbe1ece19b7fca6dd284d9f6854218c918c Author: Alan Garny Date: Thu Jan 30 16:48:43 2020 +1300 CellML Text view: slight improvement to our lexer. commit 9eda696887ae28099e87c1f97f83f9f5f4bba069 Author: Alan Garny Date: Wed Jan 22 12:44:18 2020 +1300 Some minor cleaning up. commit c1cd761b145f60d4549cf42070077938312c041a Merge: d7d77df76 bed39e642 Author: Alan Garny Date: Wed Jan 22 12:32:54 2020 +1300 Removed references to team@opencor.ws commit bed39e64298d00c7e17179a94981b0aa56127a47 Author: Alan Garny Date: Wed Jan 22 11:41:21 2020 +1300 Removed references to team@opencor.ws. commit d7d77df769da0b956aa7deebf72f614765d8d4f4 Merge: 96a6abb8e c5d7dc98c Author: Alan Garny Date: Tue Jan 21 07:50:53 2020 +1300 New snapshot. commit c5d7dc98c3fca501eabd84428ec2c0323e46e984 Author: Alan Garny Date: Mon Jan 20 18:17:24 2020 +1300 Slight update to our downloads script and page. ... to account for the fact that we are now distributing a `.pkg` file on macOS rather than a `.dmg` one. commit a25d418df660a87c0cfad8be5cff8584885d2d07 Author: Alan Garny Date: Mon Jan 20 18:03:33 2020 +1300 New snapshot. commit 96a6abb8eaba27979551188c066d5f50cafe2b47 Merge: 95ee8d53f ea951951c Author: Alan Garny Date: Mon Jan 20 18:01:04 2020 +1300 Fixed an issue with reloading a SED-ML file / COMBINE archive potentially crashing OpenCOR (closes #2290). commit ea951951c5081625bb382066eb1c29be1b10a4ee Author: Alan Garny Date: Mon Jan 20 17:09:10 2020 +1300 Slight update to our downloads page (#2290). commit 5a9ab30a2b034152d9a9fbd643c3b29476db4e0c Author: Alan Garny Date: Mon Jan 20 17:04:48 2020 +1300 Simulation Experiment view: improved the way we check graph panels and graphs. commit f92f607a3d92db7bb2af9e790f58c58f8700ea5b Author: Alan Garny Date: Mon Jan 20 16:08:24 2020 +1300 Fixed an issue with the reloading of a SED-ML file / COMBINE archive potentially crashing OpenCOR (#2290). commit dd6341da28e38249aa258b0cdf0a2896816dcbfc Author: Alan Garny Date: Mon Jan 20 13:38:30 2020 +1300 Some minor cleaning up. commit 95ee8d53f1b79d85b8d0fabec91df46ecbab38a9 Merge: b504b488b c4f8ad400 Author: Alan Garny Date: Mon Jan 20 12:42:31 2020 +1300 Removed support for Windows 7 (closes #2288). commit c4f8ad40011c755713785ea8a32c91871ab6c0bd Author: Alan Garny Date: Mon Jan 20 11:59:36 2020 +1300 Removed support for Windows 7 (#2288). commit b504b488b84292719d8e050962f43260fbc5d683 Merge: 391bbc7d5 369d3e80b Author: Alan Garny Date: Fri Jan 17 20:00:04 2020 +1300 General: provided a shortcut to reload a file (closes #2286). commit 369d3e80b0f616c811dedba3855c70e0e27cedd8 Author: Alan Garny Date: Fri Jan 17 12:05:21 2020 +1300 Slight update to our downloads page (#2286). commit 4ed81feeada6c750342694e5361a1a2f0e228780 Author: Alan Garny Date: Fri Jan 17 12:01:20 2020 +1300 General: provide a shortcut to reload a file (#2286). commit 391bbc7d546ecf0b7dfee78544dee6e0d9cf2193 Merge: 6e30e6fc3 d638b6f44 Author: Alan Garny Date: Fri Jan 17 10:07:11 2020 +1300 Mesa: upgraded to version 19.3.2 (closes #2281). commit d638b6f4417d97946dcde314435ae9183d5b974d Merge: 020aa50a9 6e30e6fc3 Author: Alan Garny Date: Thu Jan 16 16:16:43 2020 +1300 Merge branch '\''master'\'' into issue2281 commit 6e30e6fc3f01590bd641922beb00c8d20d01dc9d Author: Alan Garny Date: Thu Jan 16 16:07:00 2020 +1300 Some minor cleaning up. commit 020aa50a98d8b86697c3f7955301b286f357dab3 Author: Alan Garny Date: Thu Jan 16 15:35:31 2020 +1300 Slight update to our downloads page (#2281). commit d89f5b39f21531e70ce30e32f010ff5d7dc81c05 Author: Alan Garny Date: Thu Jan 16 15:32:17 2020 +1300 Mesa: keep using SCons (#2281). They moved to meson, but not sure how to get the same build as with SCons, so keep using it for now. commit 312527e66e8dc2524de3ac8e8633596ea3f00d65 Author: Alan Garny Date: Thu Jan 16 15:30:30 2020 +1300 Mesa: binary for version 19.3.2 (#2281). commit be01355b3ef645fa25909950d47a3f4351cc9f73 Author: Alan Garny Date: Thu Jan 16 15:20:45 2020 +1300 Revert "Mesa: require meson to build rather than SCons." This reverts commit 3476b706803f102549fffbaf4d0f5ce130f118d8. commit 0d73f1026dd81197bd3244979e9f438edfa0d4ce Merge: 3476b7068 303641f39 Author: Alan Garny Date: Thu Jan 16 14:51:45 2020 +1300 Merge branch '\''master'\'' into issue2281. commit 3476b706803f102549fffbaf4d0f5ce130f118d8 Author: Alan Garny Date: Thu Jan 16 14:51:12 2020 +1300 Mesa: require meson to build rather than SCons. commit 303641f39886ba77ce63284bf8880645e63153cc Merge: 6bea32568 857a122fa Author: Alan Garny Date: Thu Jan 16 14:50:04 2020 +1300 libgit2: upgraded to version 0.28.4 (closes #2280). commit 1971a27e4664938089469069e0518e6840d58ea8 Author: Alan Garny Date: Thu Jan 16 14:36:53 2020 +1300 Mesa: upgraded to version 19.3.2 (#2281). commit 857a122fa02577f8e027048e62da7e530b8e6771 Author: Alan Garny Date: Thu Jan 16 14:10:54 2020 +1300 Slight update to our downloads page (#2280). commit bc0eec0be542c51cd3b968246dc6651bf1cb47a9 Author: Alan Garny Date: Thu Jan 16 14:10:42 2020 +1300 libgit2: binaries for version 0.28.4 (#2280). commit 3ef762b554ff6242ea2c560433b43904ddb98732 Author: Alan Garny Date: Thu Jan 16 13:56:19 2020 +1300 libgit2: upgraded to version 0.28.4 (#2280). commit a9d1b70ec162191c8655de9350b1d1695bdeb693 Author: Alan Garny Date: Thu Jan 16 12:54:54 2020 +1300 Oxygen icons: use a hard copy rather than symbolic links. commit 7f7e59626d03e937657f3291cb8eb824c531a318 Author: Alan Garny Date: Thu Jan 16 12:20:55 2020 +1300 Oxygen icons: use symbolic links rather than a hard copy. commit 6bea3256818af5ef8a933fb89ad3c57904d7cbb0 Author: Alan Garny Date: Thu Jan 16 11:02:36 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). commit f321c5aa0034710b112ce3b478e09bfb28bf1b78 Merge: 5d0d1ec81 9ff984bb2 Author: Alan Garny Date: Thu Jan 16 10:21:53 2020 +1300 Simulation Experiment view: fixed a small GUI glitch on macOS (closes #2277). commit 9ff984bb2688bdd265d7936649d0d0a13829fe33 Author: Alan Garny Date: Thu Jan 16 09:47:58 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). commit 1b216483b70e902c5d5b159eeacc62b9cb281aa3 Author: Alan Garny Date: Wed Jan 15 18:39:52 2020 +1300 Slight update to our downloads page (#2277). commit 23211d4788da298d5d7e4d67ea6279425b56749a Author: Alan Garny Date: Wed Jan 15 18:37:49 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). Also cleaned up the relative size of different resizable widgets. commit 5d0d1ec8119de7a27c4e4a22045a8b4171379c23 Merge: bdf3b0334 7a6b811b1 Author: Alan Garny Date: Wed Jan 15 15:02:17 2020 +1300 Packaging: only distribute a `.pkg` file rather than a `.dmg` file that contains our `.pkg` file (closes #2275). commit 7a6b811b152e2fa64ec97636503d03f57bb64332 Author: Alan Garny Date: Wed Jan 15 14:27:22 2020 +1300 Packaging: only distribute a `.pkg` file rather than a `.dmg` file that contains our `.pkg` file (#2275). commit 5b368105c5393ba07e0a4e0ab51e416906d41a38 Merge: 4944c0c0f bdf3b0334 Author: Alan Garny Date: Wed Jan 15 09:35:03 2020 +1300 Merge remote-tracking branch '\''upstream/master'\''. commit bdf3b0334ef224b9284d062c8e357f1a1f1f4e55 Author: Alan Garny Date: Wed Jan 15 09:34:40 2020 +1300 Simulation Experiment view: updated our French translations. commit 4944c0c0f810fbbf7bcbcb711922136c66edd671 Merge: d719f1765 d3da38638 Author: Alan Garny Date: Tue Jan 14 23:32:43 2020 +1300 Merge branch '\''master'\'' of https://github.com/agarny/opencor. commit d719f17654689630be578dae3fc4abcc8238fb4f Author: Alan Garny Date: Tue Jan 14 23:31:15 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel (closes #2271). commit ec4c41edb73eb6abe4f090f5bb18b38271ab5069 Merge: 680720ba2 2242d93e0 Author: Alan Garny Date: Tue Jan 14 23:29:28 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel (closes #2271). commit 2242d93e0085c7836b2b66c39da0ae6db4e40112 Merge: 197463622 680720ba2 Author: Alan Garny Date: Tue Jan 14 22:33:03 2020 +1300 Merge branch '\''master'\'' into issue2271 commit 197463622581c9b411809c41d34d3929f082fbec Merge: 1a4f60e14 d3da38638 Author: Alan Garny Date: Tue Jan 14 20:13:50 2020 +1300 Merge branch '\''master'\'' into issue2271. commit d3da38638022c4904ecd1b322745cac987deb396 Author: Alan Garny Date: Tue Jan 14 20:05:19 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (closes #2272).. commit 680720ba2246cad4078efa7ed79cc05fb3b84740 Merge: 1f56f742c 6a53a6c38 Author: Alan Garny Date: Tue Jan 14 20:04:01 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (closes #2272). commit 6a53a6c386a86455dbea64f36b1df1eeab3f9b84 Author: Alan Garny Date: Tue Jan 14 15:51:29 2020 +1300 Slight update to our downloads page (#2272). commit f6f154bf858dd351c90813b6003bfa30816892fc Author: Alan Garny Date: Tue Jan 14 15:46:05 2020 +1300 SUNDIALS: binaries for version 5.1.0 (#2272). commit 039a714e147112c9d50c7dcc89c80ec28c894bee Author: Alan Garny Date: Tue Jan 14 15:36:56 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (#2272). commit 1a4f60e149696383fe124a3e3fd7d05222d4fd6c Author: Alan Garny Date: Tue Jan 14 13:02:59 2020 +1300 Slight update to our downloads page (#2271). commit 01e574239899b9c202629a882b8ce726477d095c Author: Alan Garny Date: Tue Jan 14 12:52:47 2020 +1300 Keep track of our old plot 2d annotation SED-ML files (#2271). ... and updated our SED-ML files and COMBINE archives. commit 41c85a2a2d327c3b0624300abe311d7181c6c259 Author: Alan Garny Date: Tue Jan 14 12:34:43 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes (#2271). commit a8f292b167509682b6491aba00263416a84c9305 Author: Alan Garny Date: Tue Jan 14 12:23:32 2020 +1300 Graph panel widget: can now customise the font size of the (main) title (#2271). commit 6569e617dedb0123470befc38f9dae0217b87ccd Author: Alan Garny Date: Tue Jan 14 12:22:09 2020 +1300 Some minor cleaning up. commit 302700f04fe67ddce071c3274615b3466cce28bc Author: Alan Garny Date: Tue Jan 14 10:50:22 2020 +1300 Some minor cleaning up. commit 292c89263cdccf2e9d10763b03bdb4aa1d26070a Author: Alan Garny Date: Mon Jan 13 17:13:03 2020 +1300 Simualtion Experiment view: make sure that everything is in the OpenCOR namespace. commit 0fc539b0a1790efe7f8dd5bc05b077a72122b7d1 Author: Alan Garny Date: Mon Jan 13 16:57:19 2020 +1300 Some minor cleaning up. commit 97d01e644e8e4f917ce89a5b9f5c9730684d5063 Author: Alan Garny Date: Mon Jan 13 16:53:32 2020 +1300 Graph panel widget: can now customise the font size (and visibility) of a legend (#2271). commit d634b833cee3d00f48dfcb7fde9e560606318b6f Author: Alan Garny Date: Mon Jan 13 16:48:38 2020 +1300 Simualtion Experiment view: always initialise a property that we add. This is just to be on the safe side. commit b68a8630524dfa692dbc644274ee93189b23d863 Author: Alan Garny Date: Mon Jan 13 15:25:43 2020 +1300 Some minor cleaning up. commit 92d7c0ac12c606b6deba0b8f105a35e329438742 Author: Alan Garny Date: Mon Jan 13 15:19:01 2020 +1300 Some minor cleaning up. commit b13ec7460caed223d5b1d37f21873acde9dbb45e Author: Alan Garny Date: Mon Jan 13 14:24:18 2020 +1300 Some minor cleaning up. commit bcb69db60d9e3cabc8edb72fc861e0cf11e7384b Author: Alan Garny Date: Mon Jan 13 14:02:36 2020 +1300 Some minor cleaning up. commit 8e7bdadeff7a6930ebd469b9a12d8c6c67bbee0d Author: Alan Garny Date: Mon Jan 13 13:56:03 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes (#2271). commit e7f3337b7967c7a4071d839958d4ac41f2831039 Author: Alan Garny Date: Fri Jan 10 15:59:08 2020 +1300 Some minor cleaning up. commit 7659db0b1bae3e35be4422ef5caf68db360d9ffc Author: Alan Garny Date: Fri Jan 10 15:37:10 2020 +1300 Graph panel widget: can now customise the font size of point coordiantes and zoom region coordinates (#2271). commit 771e55ba5091c8fa7252c139c690d7bc4c8f0021 Author: Alan Garny Date: Fri Jan 10 15:29:18 2020 +1300 Some minor improvement. commit ed5fa0320fb3c7bde2e651acadfcaeae3c2655cb Author: Alan Garny Date: Fri Jan 10 11:50:39 2020 +1300 Models: slight updates to our SED-ML files and COMBINE archives. commit 7f9a09e42642b62d9723a61f63e524241bcd9dd9 Author: Alan Garny Date: Thu Jan 9 16:48:28 2020 +1300 Models: renamed a couple of COMBINE archives. commit 1f56f742cb1b3c33da9c432569bc266111f94312 Author: Alan Garny Date: Wed Jan 8 17:30:33 2020 +1300 Packaging: simplified things on macOS. commit e75a1fa617d90fff232bea84fec4f179f1e268bd Merge: dba70c3a8 99661a5f7 Author: Alan Garny Date: Fri Jan 3 16:46:49 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 (closes #2269). commit 99661a5f73f26ca1c7b3166be95599cc807b9c94 Author: Alan Garny Date: Fri Jan 3 16:13:18 2020 +1300 Slight update to our downloads page (#2269). commit a4b1705fed94dc8b4c367ea8d34b23f62b721f3a Author: Alan Garny Date: Fri Jan 3 16:11:37 2020 +1300 LLVM+Clang: binaries for version 9.0.1 (#2269). commit e8543df8489f341930b5271dbdc174035619063e Author: Alan Garny Date: Fri Jan 3 12:59:51 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 (#2269). commit dba70c3a8b650d0a2edfe673134d9d512d9b59a3 Merge: ea3202727 1610308a7 Author: Alan Garny Date: Sat Dec 21 20:04:41 2019 +1300 Fixed a small issue with our splash screen window on Windows. Also, some minor cleaning up. commit 1610308a74d719abd1586f2365f9a66c84772f24 Author: Alan Garny Date: Sat Dec 21 18:58:25 2019 +1300 Splash Screen window: make sure that OpenCOR has been initialised on Windows. Indeed, on Windows, we never try the CLI version of OpenCOR (since we have a special main.cpp for it), which means that OpenCOR was not initialised as an application prior to showing our splash screen. commit adc6df3641f3bd4c7776c7756e421de72f2e9031 Author: Alan Garny Date: Sat Dec 21 18:58:01 2019 +1300 Splash Screen window: renamed our closeAndDeleteAfter() to deleteLater(). ... since we don'\''t close and delete anymore, but only delete. commit e146b5f8ce3ac478e31253952f22ec126da78bd1 Author: Alan Garny Date: Sat Dec 21 18:48:22 2019 +1300 Some minor cleaning up. commit ea3202727c1cefdff6fbbb14259e35ccc16811e2 Merge: 72b342448 fc56dce00 Author: Alan Garny Date: Fri Dec 20 19:18:21 2019 +1300 New snapshot. commit fc56dce00e028966bb5e14e1b893b67838d2de26 Author: Alan Garny Date: Fri Dec 20 14:27:38 2019 +1300 New snapshot. commit 72b34244852a75fc18edcf11e1fc6ce871f21a2b Merge: ff7164e91 9459ad5f1 Author: Alan Garny Date: Fri Dec 20 14:22:04 2019 +1300 Fixed a couple of issues with our splash screen (closes #2265). commit 9459ad5f19879bbad2d7600228848cc34507d235 Author: Alan Garny Date: Fri Dec 20 12:51:04 2019 +1300 Slight update to our downloads page (#2265). commit 4aa99de212991f1298e78d43cd33acc2bb1c0a40 Author: Alan Garny Date: Fri Dec 20 12:46:35 2019 +1300 Some minor cleaning up. commit 60006cd3c90b493283c7904c8b55cd8a5b27810a Author: Alan Garny Date: Fri Dec 20 12:43:13 2019 +1300 Splash screen: delete ourselves rather than closing ourselves (#2265). Since we can'\''t close ourselves anymore. commit 9c63f0ab0312c529af0aba2bcc4eb04b79b7e31d Author: Alan Garny Date: Fri Dec 20 12:41:56 2019 +1300 Prevent the splash screen from being closed (#2265). This could indeed have happened when the splas screen appearead and we pressed Ctrl+Q before the main window would be created (and not necessarily showing). commit 9496364c10a3888684351f5f4389a61ed259de81 Author: Alan Garny Date: Fri Dec 20 11:54:23 2019 +1300 Main window: make sure that we keep track of the fact that we are about to quit (#2265). Not sure why, but this somehow got removed at some point, which means that we couldn'\''t anymore catch when someone was closing our main window while we were showing our splash screen...! commit 1302d2822210876865d7c12fc23bc32cf8a39b5d Author: Alan Garny Date: Fri Dec 20 11:12:47 2019 +1300 Splash screen: don'\''t hide ourselves when pressed (#2265). commit 5760de1bd396edb9808785d653ecfda5af84f736 Author: Alan Garny Date: Fri Dec 20 09:43:39 2019 +1300 Slight improvements to the way we use our splash screen (#2265). commit 94bc4e6ee92de244be1d4128c69400e7ef4acd83 Author: Alan Garny Date: Fri Dec 20 09:40:40 2019 +1300 Slight improvements to the way we use our splash screen (#2265). commit ff7164e91086d71815573c821cb51940af5d6699 Merge: 80ad6e4b9 821f3d820 Author: Alan Garny Date: Thu Dec 19 17:15:49 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled (closes #2263). commit 821f3d820b515c0d59602a40b85ada16cafb4d16 Author: Alan Garny Date: Thu Dec 19 16:43:25 2019 +1300 Slight update to our downloads page (#2263). commit 044356cb0a9e4aef1c3343223f9a8ec9d4d5eed4 Author: Alan Garny Date: Thu Dec 19 16:39:10 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled (#2263). commit 80ad6e4b9242c23a14a3270405a56c3685ee3067 Merge: a1e8dd9e4 64167769d Author: Alan Garny Date: Thu Dec 19 11:53:07 2019 +1300 General: don'\''t ask to confirm the overwriting of a file when on macOS 10.15 (closes #2261). commit 64167769dbb5326fc57aecd350bc2387476f1e4a Author: Alan Garny Date: Thu Dec 19 11:15:11 2019 +1300 Some minor refactoring. commit b17d0befa8e91d55765e19b8edbde686bb86504b Author: Alan Garny Date: Thu Dec 19 11:12:33 2019 +1300 Some minor cleaning up. commit 37cd0e1151bc22300efa2f7a0f03ed7c5dc053d2 Author: Alan Garny Date: Thu Dec 19 11:12:17 2019 +1300 Some minor cleaning up. commit 989919d938d2a8e90b2a78a47f75c218fcac7cee Author: Alan Garny Date: Thu Dec 19 11:04:33 2019 +1300 Slight update to our downloads page (#2261). commit 53b5d53951b53f5757c9a409c0b1ec2e6095f2cf Author: Alan Garny Date: Thu Dec 19 11:03:15 2019 +1300 General: don'\''t ask to confirm the overwriting of a file when on macOS 10.15 (#2261). commit a1e8dd9e424126a2ee92002f27b588c246251466 Merge: 324d77d3c 688a7b12c Author: Alan Garny Date: Tue Dec 17 18:11:16 2019 +1300 Simulation Experiment view: can now reopen a remote CellML file from a SED-ML file (closes #2191). commit 688a7b12c43be156061888d25a713f9679141c89 Author: Alan Garny Date: Tue Dec 17 17:29:30 2019 +1300 Slight updates to our downloads and what is new pages (#2191). commit c25941143c282e3d5f0d61ff599774358f0d0c86 Merge: 2967feaa7 324d77d3c Author: Alan Garny Date: Tue Dec 17 17:18:48 2019 +1300 Merge branch '\''master'\'' into issue2191. commit 324d77d3c41c27515eed62dd0e825ce18b13c0bb Merge: be92b58b4 10447c14b Author: Alan Garny Date: Tue Dec 17 17:16:10 2019 +1300 QtWebKit: upgraded to v5.212.0-alpha3 (#2252). commit 2967feaa76e4b15a1c8623763f0ae28a8bdaf0fd Author: Alan Garny Date: Tue Dec 17 17:14:33 2019 +1300 Simulation Experiment view: make sure that we can reopen a remote CellML file from a remote SED-ML file (#2191). commit 10447c14b510c622d2a248ac32b480514d4ee16f Author: Alan Garny Date: Tue Dec 17 16:39:49 2019 +1300 Slight updates to our downloads pages (#2252). commit 4604764d735c4b030d31f8bfc88419ac17b7db6f Author: Alan Garny Date: Tue Dec 17 16:33:48 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 (#2252). commit 297e694dd40b9ad19e18d90777845f8193f7f4a6 Author: Alan Garny Date: Tue Dec 17 16:20:02 2019 +1300 Some minor cleaning up. commit 3e6850ff8c404ede23e781c42e338444b2a4fad1 Author: Alan Garny Date: Tue Dec 17 10:52:26 2019 +1300 QtWebKit package: fixed a small problem in our CMakeLists.txt file (#2252). commit 5aa68df8755b203e3bfb727703c8507bff6714b7 Merge: a84489df6 be92b58b4 Author: Alan Garny Date: Mon Dec 16 17:53:26 2019 +1300 Merge branch '\''master'\'' into issue2252. commit be92b58b43a8d28875df917fbbaaf69b2fcffa1c Author: Alan Garny Date: Mon Dec 16 17:52:25 2019 +1300 Common widget: slight improvement to our hideBusyWidget() method. Now, we can really see the final state of a progress busy widget. commit a84489df69ceec44dbe9baa78b6636ba5f31ef78 Author: Alan Garny Date: Mon Dec 16 16:27:01 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 (#2252). commit ab28d7e20ed271b3a1c44c1e1f566ba81dc112b0 Author: Alan Garny Date: Mon Dec 16 16:26:35 2019 +1300 Don'\''t only build QtWebKit (#2252). commit 890f711a114ab2cc4f87c6cb7cf4d1770a4fb584 Author: Alan Garny Date: Mon Dec 16 15:40:07 2019 +1300 QtWebKit: make sure that we use the correct release tag (#2252). commit 192a0c26c5a1fe28c69474fa21c6137b8a9a2364 Merge: e33783d06 539c7fcb1 Author: Alan Garny Date: Mon Dec 16 15:37:07 2019 +1300 Merge branch '\''master'\'' into issue2252. commit e33783d06f946affd91ff9efa0ec531837defddf Author: Alan Garny Date: Mon Dec 16 13:36:54 2019 +1300 Partially reverting commit cc29b06. We tried to optimise things a bit too much, but for example we need ICU on Linux to build QtWebKit! commit 539c7fcb13e100ff4e8a51e5f69978457777093a Merge: 76a1ffc47 ae303c434 Author: Alan Garny Date: Fri Dec 13 18:33:02 2019 +1300 New snapshot. commit ae303c4342362f46493a20ddbd4e7504622c57e2 Author: Alan Garny Date: Fri Dec 13 16:04:49 2019 +1300 Some minor cleaning up. commit fa7aec731caa68d68525815e42c5540ca4ababe3 Author: Alan Garny Date: Fri Dec 13 14:11:14 2019 +1300 New snapshot. commit 76a1ffc4777f7fcc656e4f7b5954096e524d4a7f Merge: afe3b538f 8650758b3 Author: Alan Garny Date: Fri Dec 13 14:07:01 2019 +1300 Python package: updated our macOS binary (closes #2256). commit 8650758b3ebddcf5920b4a72c3ac99b5b3a8d669 Author: Alan Garny Date: Fri Dec 13 13:28:48 2019 +1300 Python support: added a test to ensure that we can import all the modules that we should have (#2256). commit 6fccf814ed1d14f6ac6ffb3e509122ef001535eb Author: Alan Garny Date: Fri Dec 13 11:19:50 2019 +1300 Python package: update our macOS binary (#2256). The old one didn'\''t contain lzma! commit afe3b538fcd89157f6e007b54308779acadd32c4 Merge: 9f90a3b16 a377cd5c9 Author: Alan Garny Date: Thu Dec 12 21:55:03 2019 +1300 Python support: added some Python-based tests (closes #2178). commit a377cd5c931583f5ddc3e7aecbac19bded2bfd53 Author: Alan Garny Date: Thu Dec 12 19:34:17 2019 +1300 Python support: test results for a Windows debug are different on different machine (#2178). So, using the test results from our CI machine. Ridiculous! commit b3baf3f2efda1580490fd2e55ad7df414db23861 Author: Alan Garny Date: Thu Dec 12 18:55:14 2019 +1300 Python support: test results for a Windows release are different on different machine (#2178). So, using the test results from our CI machine. Ridiculous! commit aa710320468867f514d9f74b046dbbf4b3c932ab Author: Alan Garny Date: Thu Dec 12 18:14:10 2019 +1300 Python support: distinguish between the release and debug versions of our test results (#2178). And yes... not only are there slight differences between platforms, but also between targets! commit 26237e2eefb2816ed115ab98e277387af33061c1 Author: Alan Garny Date: Thu Dec 12 17:41:15 2019 +1300 Python support: test results for Windows and Linux (#2178). commit 99ca2373ed7f42a7d5fcd9ec1cc2241c87ac6c2d Author: Alan Garny Date: Thu Dec 12 17:26:10 2019 +1300 Python support: have our tests use the results for the current platform (#2178). commit 1ba1c577f85b9b7bcc78897a3d2f37c7bf679ac8 Author: Alan Garny Date: Thu Dec 12 17:25:08 2019 +1300 Python support: added platform-specific expected results (#2178). Still need to update our Windows and Linux ones though. commit db315e658f62474b3bf2b840454419824678508a Author: Alan Garny Date: Thu Dec 12 17:13:31 2019 +1300 Python support: use full accuracy for numbers (#2178). Indeed, we are having problems with our release version on Windows, which would require a one significant digit accuracy to get our tests to pass. This is clearly ridiculous, so instead we are going to use full accuracy and then distinguish between our platforms...! commit ee49c7cfa29af8a1fa46282757d48594322e049e Author: Alan Garny Date: Thu Dec 12 15:46:01 2019 +1300 Python support: addresses issues from codefactor (#2178). See https://www.codefactor.io/repository/github/opencor/opencor/pull/2255. commit c2e8949a1d3dfb2e9fb1602b9c0b94a7c6f9deb5 Author: Alan Garny Date: Thu Dec 12 15:26:15 2019 +1300 Slight update to our downloads page (#2178). commit 6c7100faf9118bd033d1b1d39eebf3356e2bc91a Author: Alan Garny Date: Thu Dec 12 15:10:53 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI (e.g. using a Python script) on Windows (#2178). See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit e53c9630519357b6f88609af0cacbdb1a90400f2 Author: Alan Garny Date: Thu Dec 12 14:43:12 2019 +1300 Some minor cleaning up. commit 370c593eeac26225fc03619d4ccab00d4cc21629 Author: Alan Garny Date: Thu Dec 12 14:29:39 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI (e.g. using a Python script) on Windows (#2178). See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit bd6864f5718a80b66cdf6a9ddf7f094c6e8fbeb8 Author: Alan Garny Date: Thu Dec 12 10:20:10 2019 +1300 Python support: test our numerical results using two significant digits (#2178). Three significant digits are indeed still too much. commit fccf5d06786555134c38bd27f3641699cbfe6881 Author: Alan Garny Date: Thu Dec 12 10:15:21 2019 +1300 Python support: test our numerical results using three significant digits (#2178). commit 783d965e695520034a1d9e4d4b22828750894000 Author: Alan Garny Date: Thu Dec 12 10:06:01 2019 +1300 Python support: quickly test the full extent of differences in numerical results between platforms (#2178). commit c56a8cb4afcd54e10f888bf2f8642b3536578d8d Author: Alan Garny Date: Thu Dec 12 09:29:24 2019 +1300 Data store interface: got rid of all our assertions. Indeed, although those methods are not officially part of our Python wrappers, they could still be called from Python. So, we need to ensure that they don'\''t cause problems (if the original assertion was to be false), which is what we are already doing for methods that are officially part of our Python wrappers. commit 7fc8976ec19f37b98455a47310810c11a820413c Author: Alan Garny Date: Wed Dec 11 20:23:39 2019 +1300 Python support: fixed a small Unicode (?) problem in one of our tests (#2178). This was failing on Windows. commit d1661b78f9fdeea534ac28c2ba45fb888de856ff Author: Alan Garny Date: Wed Dec 11 20:20:15 2019 +1300 Python support: use 2-digit precision for our Python values (#2178). Indeed, 3 digits still raises issues between platforms! commit 09e26c4e714c528eb44b4f241508bcc277bfd2c2 Author: Alan Garny Date: Wed Dec 11 19:35:43 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit 90625cfe9b21626a48873083af257ad1a1878b08 Author: Alan Garny Date: Wed Dec 11 19:27:28 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit d82945952b821c70b0ca7f193b1afa2361932121 Author: Alan Garny Date: Wed Dec 11 19:14:09 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit e32290a9e0c4294b4e7aecc08cf6efd5fa54a539 Author: Alan Garny Date: Wed Dec 11 19:03:43 2019 +1300 Python support: slight update to our the number of digits we want to print our Python tests (#2178). This is so that we don'\''t floating rounding issues between platforms. commit f65d47464b6ceaa3b115318f5a690ffb30e9c049 Author: Alan Garny Date: Wed Dec 11 18:47:38 2019 +1300 Python support: reorganised our Python tests (#2178). So that we can run every test individually, if needed. commit 7ee92f1e50212594907585cc09f11f07fb9e3552 Author: Alan Garny Date: Wed Dec 11 18:31:24 2019 +1300 Python support: some minor refactoring of our Python tests (#2178). commit 955c6f3b87a3aa2a1dd7fb94312e0e82c1b29e94 Author: Alan Garny Date: Wed Dec 11 18:22:05 2019 +1300 Some minor cleaning up. commit 90c89351e26552d1a8367900c1e28e8c18d309fd Author: Alan Garny Date: Wed Dec 11 18:15:56 2019 +1300 Python support: added Python tests for vdP28 (#2178). commit e5ec9ad95f6ffe9b8dd33fc3eb5cc48c80b7402a Author: Alan Garny Date: Wed Dec 11 18:12:20 2019 +1300 Python support: added Python tests for N62 (#2178). commit 62de089f09a8356e1a9da9e5f6e6aa24168d5460 Author: Alan Garny Date: Wed Dec 11 18:06:03 2019 +1300 Python support: added Python tests for HH52 (#2178). commit fa7c7b6e3e8b1f1d1a688da7767ad73db7809e1c Author: Alan Garny Date: Wed Dec 11 17:54:14 2019 +1300 Some minor cleaning up. commit 0ae900b48c63e5f11aa30144d3f1282b9f397b6c Author: Alan Garny Date: Wed Dec 11 17:47:51 2019 +1300 Some minor cleaning up. commit 9fa25ec26f024b44cb3277340487c9b4c1dd8042 Author: Alan Garny Date: Wed Dec 11 17:27:26 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 9140a7a64254e30f515fee68f004ab0971c0b7c3 Author: Alan Garny Date: Wed Dec 11 17:08:07 2019 +1300 Python support: some minor refactoring of our coverage tests (#2178). commit e8e37e83af6a23da98b280a7716667d1dc65a55a Author: Alan Garny Date: Wed Dec 11 16:55:08 2019 +1300 Python support: have our coverage testing use a DAE model (#2178). commit 19a86396f4d2d848f106f8caffd01d4a45ffc547 Author: Alan Garny Date: Wed Dec 11 16:51:56 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 23d2eff396eda2439d8111040732a8425d978386 Author: Alan Garny Date: Wed Dec 11 16:31:21 2019 +1300 Some minor cleaning up. commit a19099d6a6e662ec1cd4fdacbc93445c12004124 Author: Alan Garny Date: Wed Dec 11 16:28:16 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit cb20f42a69dcf4f28adff4cb080f4ab39d8dcc42 Author: Alan Garny Date: Wed Dec 11 16:27:48 2019 +1300 Some minor cleaning up. commit 5ead3a6bc5514b0131409cf35e1d374284ab1621 Author: Alan Garny Date: Wed Dec 11 16:13:54 2019 +1300 Some minor cleaning up. commit e993f61e886c8ce037ef4bf64eca3fb8b4d3c730 Author: Alan Garny Date: Wed Dec 11 16:06:30 2019 +1300 Some minor cleaning up. commit ae158e4e017346c88e4a191a93581f3af8bf9b45 Author: Alan Garny Date: Wed Dec 11 16:04:14 2019 +1300 Some minor cleaning up. commit f7b5c421fe645ac94a99410c74853710b967285a Author: Alan Garny Date: Wed Dec 11 16:01:20 2019 +1300 Simulation support: added ode_solver_property() and nla_solver_property() as Python wrappers to our SimulationData class (#2178). commit 2ae3ee04a199d866ac45126ecd843f27127ae266 Author: Alan Garny Date: Wed Dec 11 15:57:56 2019 +1300 Some minor cleaning up. commit 225b1932776fa50f9e48747222a4e4eef3f4e97a Author: Alan Garny Date: Wed Dec 11 15:23:38 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 02fef2bcb89d587bce306ee90dfba6ea80903b3f Author: Alan Garny Date: Wed Dec 11 14:56:12 2019 +1300 Simulation support: added set_value() as a Python wrapper to our DataStoreValue class (#2178). commit 1f82a3acab539bf4754c870881194ee6a569b7e8 Author: Alan Garny Date: Wed Dec 11 14:55:31 2019 +1300 Some minor cleaning up. commit fab624e9030b02aca21a74508d80c980f99b9502 Author: Alan Garny Date: Wed Dec 11 14:12:05 2019 +1300 Some minor cleaning up. commit d258aa27e14f147129ed13e75cec4b7b2c4f232f Author: Alan Garny Date: Wed Dec 11 14:10:28 2019 +1300 Some minor cleaning up. commit 48c203a24949ac80517a0a9c50ad36106ebe71fa Author: Alan Garny Date: Wed Dec 11 13:44:33 2019 +1300 Some minor cleaning up. commit d9bb208208dfd4f954dee971e8e1cb85ec0ac709 Author: Alan Garny Date: Wed Dec 11 13:24:49 2019 +1300 Python support: renamed our edge tests to coverage tests (#2178). commit a04843cc1d1b76d91489de3def7df6e719ce253b Author: Alan Garny Date: Wed Dec 11 13:19:43 2019 +1300 Python support: some work on edge testing of DataStore (#2178). commit efaa317ea16c38a1373dfba4605ce2c23ea59c0d Author: Alan Garny Date: Wed Dec 11 13:19:07 2019 +1300 Some minor cleaning up. commit 583cb968d12723c0a084ea5e43a1f69039f17d5a Author: Alan Garny Date: Wed Dec 11 13:10:14 2019 +1300 Some minor cleaning up. commit 980b0f9a334c4c9fa1e19e2eb12eb334317ca1af Author: Alan Garny Date: Wed Dec 11 12:51:00 2019 +1300 Python support: some work on edge testing a list of DataStoreVariable items (#2178). commit 0455b2fe7421123e70b1024860fa46fcbae66fb6 Author: Alan Garny Date: Wed Dec 11 12:48:08 2019 +1300 Some minor cleaning up. commit dd9c541a349087596baa1c31d6762cc81a26dff2 Author: Alan Garny Date: Wed Dec 11 12:19:22 2019 +1300 Simulation support: added runs_count() and values_count() as Python wrappers to our DataStoreVariable class (#2178). commit 665c98c563ec5379e28cad13cb39f31d08f1614f Author: Alan Garny Date: Wed Dec 11 11:24:16 2019 +1300 Python support: some work on edge testing DataStoreVariable (#2178). commit f5322cb27087435812c414ad0282cd2e5de7c9ef Author: Alan Garny Date: Wed Dec 11 11:15:58 2019 +1300 Some minor cleaning up. commit 390a60bb725de2f497827190c89ccbfe93d74f30 Author: Alan Garny Date: Wed Dec 11 11:06:56 2019 +1300 Python support: some work on edge testing DataStoreVariable (#2178). commit 3881439c5a352b8bcd45572f737b812d05e139c4 Author: Alan Garny Date: Tue Dec 10 19:19:22 2019 +1300 Python support: make sure that we ask to open a valid and existing file (#2178). commit c7445148322eb2bc5f3a509e0b8e44daab860ddd Author: Alan Garny Date: Tue Dec 10 19:04:13 2019 +1300 Some minor cleaning up. commit 48cae8d0c06135132911bbdca701d543c17269d7 Author: Alan Garny Date: Tue Dec 10 18:42:03 2019 +1300 Some minor cleaning up. commit 2f37e071d2182df541e91ee0fc1da599adb74369 Author: Alan Garny Date: Tue Dec 10 18:20:12 2019 +1300 Python support: partially reverted commit ea352e4b2 (#2178). Indeed, we could (obviously!) not run our script from the Python Console window, only from the command line. commit 04951dd2f9e344d7d7332e653017420d10949969 Author: Alan Garny Date: Tue Dec 10 18:02:07 2019 +1300 Some minor cleaning up. commit 40c61b757a01523c32db9696a69ba648b60c4050 Author: Alan Garny Date: Tue Dec 10 17:50:05 2019 +1300 Python support: some minor refactoring our basic tests script (#2178). commit d0d1b3e79a93c4cad6995a575c444a3cccb8f632 Author: Alan Garny Date: Tue Dec 10 17:47:14 2019 +1300 Python support: prevent the creation of a .pyc file for our imported basictests module (#2178). commit ee49d3893f2eefcef164ae4b8c53de768c7d2e42 Author: Alan Garny Date: Tue Dec 10 17:42:54 2019 +1300 Scripts: don'\''t protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents [Python]/bin/jupyter (and therefore our Jupyter console, lab and notebook scripts) from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit fe23804be7c82ebec70ad6bca1412ddbca81d3e6 Author: Alan Garny Date: Tue Dec 10 16:59:02 2019 +1300 Python support: some minor refactoring our basic tests script (#2178). commit 1f735e2bfa9d74bc35da7eb5eba880d4d923fc78 Author: Alan Garny Date: Tue Dec 10 16:40:30 2019 +1300 Python support: renamed our basic tests file (#2178). commit 64be3b08970cb11c402211729e9b79a8edb6d53a Author: Alan Garny Date: Tue Dec 10 16:33:36 2019 +1300 Python support: added some edge tests (#2178). They come from commit 3ff8a2f03. commit 3ff8a2f03fcd1f09a03e19438791cf01d8499aac Author: Alan Garny Date: Tue Dec 10 16:26:40 2019 +1300 Pythonh support: removed some of our tests (#2178). They are going to be moved to a different Python script. commit ea352e4b258bf6e92da06f7f9a84a797b4b7a815 Author: Alan Garny Date: Tue Dec 10 16:25:35 2019 +1300 Some minor cleaning up. commit 984956e425bbd47f7c1b8869fd41947227f6c80c Author: Alan Garny Date: Tue Dec 10 15:33:33 2019 +1300 Some minor cleaning up. commit f482ee1135884e5bdf706d297e95a133a4c6d105 Author: Alan Garny Date: Tue Dec 10 15:20:50 2019 +1300 Some minor cleaning up. commit e10069e9709f567179f795b6df0bc00dc79c44f0 Author: Alan Garny Date: Tue Dec 10 14:32:53 2019 +1300 Test models: slightly changed the look of one of our curves in the Lorenz SED-ML file / COMBINE archive. commit 61b01c17da3bde9b31d4323f30acb227631b9669 Author: Alan Garny Date: Tue Dec 10 14:12:44 2019 +1300 Python support: replace Heun with Forward Euler in our test (#2178). commit 30fac6e7900535fb8ff06383202ad75bb817cc2a Author: Alan Garny Date: Tue Dec 10 13:53:59 2019 +1300 Some minor cleaning up. commit f949eda8915a54e1fed189f6ff368892e42a6086 Author: Alan Garny Date: Tue Dec 10 13:50:49 2019 +1300 Python support: use the same initial settings to test our local/remote CellML file (#2178). commit ae5411529b34ae4e0f64a7a027c91be7759be9da Author: Alan Garny Date: Tue Dec 10 13:46:51 2019 +1300 Some minor cleaning up. commit 2d493fb8e8e93793e8733ce4197ec0ee09720a64 Author: Alan Garny Date: Tue Dec 10 12:53:39 2019 +1300 Test utils: further clean up our test output (#2178). commit 921fb66171125f40007d3db32577d7c34def3722 Author: Alan Garny Date: Tue Dec 10 12:35:24 2019 +1300 Some minor cleaning up. commit e886f9cb3e5d080c155efd6a7ae2576a29ae9e57 Author: Alan Garny Date: Tue Dec 10 12:03:47 2019 +1300 Allow arguments to our runtests.bat script. commit 7bd5a6efe929ce0aec605c016f2dac67a05b32cf Author: Alan Garny Date: Tue Dec 10 12:03:28 2019 +1300 Slight improvement to our make[tests] scripts. commit c3f03c28322138334262d950a9efd03f0c2906d7 Author: Alan Garny Date: Tue Dec 10 10:56:50 2019 +1300 Test utils: further clean up our test output (#2178). commit 7f49449a989ab744aaa968c1f990c021e82ed5c2 Author: Alan Garny Date: Tue Dec 10 10:22:20 2019 +1300 Test utils: further clean up our test output (#2178). commit a96eb8c27682c7980a86e1bc62e6ad8b374316b5 Author: Alan Garny Date: Mon Dec 9 20:19:31 2019 +1300 Some minor cleaning up. commit 17cad5a74cf6b607fc868cc6b122eb052338f821 Author: Alan Garny Date: Mon Dec 9 20:14:58 2019 +1300 Simulation support: simplified our set_starting_point() Python wrrapper (#2178). commit 9a3a6df8a0e79c7627902d52230363c7f088a4bb Author: Alan Garny Date: Mon Dec 9 20:04:35 2019 +1300 Python support: some work on our Python test (#2178). commit cc2f02c5a752e1ec36b55096451384b624e24460 Author: Alan Garny Date: Mon Dec 9 20:03:46 2019 +1300 Python support: some work on our Python test (#2178). commit 96de7e79f63afc9a485e4faa15406be890888ac8 Author: Alan Garny Date: Mon Dec 9 19:58:18 2019 +1300 Simulation support: added set_[ode|nla]_solver_property() as Python wrappers (#2178). commit 87a83ec9c7e37d3ef6b396f832837056534ba484 Author: Alan Garny Date: Mon Dec 9 19:57:32 2019 +1300 Some minor cleaning up. commit 09a4f7cf0516b0afea2ae7fd2fba260a1ccd5e87 Author: Alan Garny Date: Mon Dec 9 19:49:54 2019 +1300 Simulation support: renamed our add[Ode|Nla]SolverProperty() method to set[Ode|Nla]SolverProperty() (#2178). No idea why it was called add[Ode|Nla]SolverProperty() in the first place, but what we are doing is setting and not adding, so... commit ba56f3cfc1f3685fa49b91fdd9980bb452607195 Author: Alan Garny Date: Mon Dec 9 19:45:16 2019 +1300 Simulation support: added a Pythonic method to retrieve the name of an ODE/NLA solver (#2178). commit 16fe10138bb403cdfc83988c3e9e093ad7974b31 Author: Alan Garny Date: Mon Dec 9 19:24:54 2019 +1300 Some minor cleaning up. commit c5c3b2a4db2d481b0b916caa773a2c160fcce7eb Author: Alan Garny Date: Mon Dec 9 19:18:54 2019 +1300 Python support: have our Python test output simulation results (#2178). commit b51518394a05ac385ebb3e2409a4f205a15fca98 Author: Alan Garny Date: Mon Dec 9 18:11:19 2019 +1300 Python support: some work on our Python test (#2178). commit c030b54690e9aa27f19903262348efa96ed9d8c3 Author: Alan Garny Date: Mon Dec 9 18:09:56 2019 +1300 Simulation support: added starting_point(), ending_point() and point_interval() as Python wrappers (#2178). commit c9b94d15b48357dca0a27cb99765ff41b50b97e0 Author: Alan Garny Date: Mon Dec 9 17:28:13 2019 +1300 Some minor cleaning up. commit 37d295c9316b6c01993f012218bcd05bee3d3ad0 Author: Alan Garny Date: Mon Dec 9 17:12:43 2019 +1300 Data store interface: renamed setLabel() and label() to setName() and name(), respectively. commit 4ea4845a18bdac3c5b782e299129a98bf0cdfa7b Author: Alan Garny Date: Mon Dec 9 16:41:40 2019 +1300 Some minor cleaning up. commit 4d8c55617b7c18f2ae63086a37516e06a70619ef Author: Alan Garny Date: Mon Dec 9 16:29:13 2019 +1300 Some minor cleaning up. commit 663727e73b1930106ae016e8dd08c6fa66193b91 Author: Alan Garny Date: Mon Dec 9 16:25:37 2019 +1300 Some minor cleaning up. commit e4ca20eb9660fe554cfc2bf3773b21757d73f954 Author: Alan Garny Date: Mon Dec 9 16:04:54 2019 +1300 Python support: check for an invalid local and remote file (#2178). commit 9148ea7985d691709e4d4b37b15bc10fdf821f76 Author: Alan Garny Date: Mon Dec 9 16:04:26 2019 +1300 Python support: check for the validity and issues of a simulation file (#2178). commit daa172b13634c29317494226f83f8cba4c9a2f6e Author: Alan Garny Date: Mon Dec 9 15:45:01 2019 +1300 Some minor cleaning up. commit f882ec7e833ce740c066b47fb727e5a1913db04f Author: Alan Garny Date: Mon Dec 9 15:40:22 2019 +1300 Python support: test for an unknown local and remote file (#2178). commit e79887a05d3d49ea156194270e1ed9494d3f088b Merge: d4796faf3 9f90a3b16 Author: Alan Garny Date: Mon Dec 9 15:16:04 2019 +1300 Merge branch '\''master'\'' into issue2178. commit 9f90a3b165cda3ae808c3b63bef8231bfe74ef25 Merge: 70e4b07b5 7d879a283 Author: Alan Garny Date: Mon Dec 9 15:15:20 2019 +1300 Various cleaning ups. commit d4796faf31b90c48d8193ca212a7fa167c32cdd9 Author: Alan Garny Date: Mon Dec 9 15:14:42 2019 +1300 Some minor cleaning up. commit a7e8382a89876c35b4ddea89636d7dd2b5c477cb Author: Alan Garny Date: Mon Dec 9 15:11:24 2019 +1300 Python support: added some Python-based tests (#2178). commit 418964e8ac59f6417349347c60a898331dbf7302 Author: Alan Garny Date: Mon Dec 9 14:48:01 2019 +1300 Python support: get our Python script to use the right path (#2178). commit 105cff2c666eb6b041465a1ba56180e1c9e18b4e Author: Alan Garny Date: Mon Dec 9 14:36:24 2019 +1300 Python support: renamed our Python script (#2178). commit 2090f9fb7f2ead1b70bb18ab602919f9551acdb2 Author: Alan Garny Date: Mon Dec 9 14:35:49 2019 +1300 Python support: moved our Python script (#2178). commit 7d879a283fce122a86d1c527d60006dd405f2be5 Author: Alan Garny Date: Mon Dec 9 14:09:09 2019 +1300 Some minor cleaning up. commit d6d8037be8794a847c828c3675c6f1b150790e58 Author: Alan Garny Date: Mon Dec 9 13:30:11 2019 +1300 Scripts: don'\''t protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents [Python]/bin/jupyter (and therefore our Jupyter console, lab and notebook scripts) from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit 10f106b217bb22dbaaf1d700b5a3c5a4d48b0504 Author: Alan Garny Date: Sat Dec 7 16:26:17 2019 +1300 Simulation Experiment view: make sure that our file tab icon gets properly updated when running a simulation from Python. commit 52c716acb69cb1dd167d844202068efec9d530f9 Author: Alan Garny Date: Fri Dec 6 16:05:37 2019 +1300 Some minor cleaning up. commit 908206d331c50d4aebee87d189f6b04c457f63e8 Author: Alan Garny Date: Fri Dec 6 15:48:41 2019 +1300 Some minor cleaning up. commit 7f0cbe1c04c0b3adbf87090abad43d34f7203a2f Author: Alan Garny Date: Fri Dec 6 15:17:09 2019 +1300 Some minor cleaning up. commit 9fd2dbaa11079122bf5f8e9168bde5cf6ba7af83 Author: Alan Garny Date: Fri Dec 6 15:13:42 2019 +1300 Simulation support: fixed a problem with SimulationSupportPythonWrapper::run(). Indeed, it may happen, when trying to call disconnect() on pSimulation, that pSimulation has been deleted just before. So, to call disconnect() hangs up IPython and renders our Python Console window unusable. Unfortunately, there is no (easy?) way to test whether pSimulation is still valid. So, we don'\''t call disconnect() anymore and, instead, pass Qt::UniqueConnection in our calls to connect(). This leaves the connection with waitLoop, but this isn'\''t (shouldn'\''t be?) a problem since waitLoop gets out of scope when leaving SimulationSupportPythonWrapper::run(). commit aba11c46607d3e524c8ae3cbbb775504c1a7c089 Author: Alan Garny Date: Thu Dec 5 18:06:35 2019 +1300 Some minor cleaning up. commit 76d232b174057ac5b8b9953e603870d5c3408f70 Author: Alan Garny Date: Thu Dec 5 17:42:46 2019 +1300 Core plugin: make sure that we get told if there is something wrong with guiOpenFile() and guiOpenRemoteFile(). commit 6b257b26616806e137969901af7db762744e3eb9 Author: Alan Garny Date: Thu Dec 5 16:46:37 2019 +1300 Simulation support: added a data_store() wrapper for our SimulationResults class. commit f1c0a75cf85ce29461f2c2517d74c608722cfd94 Author: Alan Garny Date: Thu Dec 5 16:45:59 2019 +1300 Some minor cleaning up. commit a857304a2de5316749f43fc26b4918d883c770d2 Author: Alan Garny Date: Thu Dec 5 16:42:18 2019 +1300 Some minor cleaning up. commit 63de2b17c7e6f9935165a55e9dc4ef1a4641fea2 Author: Alan Garny Date: Thu Dec 5 16:29:21 2019 +1300 Some minor cleaning up. commit 999b8992995301c5428c821aebdfec7dbecb90f5 Author: Alan Garny Date: Thu Dec 5 16:26:29 2019 +1300 Some minor cleaning up. commit 14f9f09cc25c39d5d6ec25fcd96e00adcc8e36cd Author: Alan Garny Date: Thu Dec 5 15:58:30 2019 +1300 Some minor cleaning up. commit 118d760b35cd52d8abc2e68a83695a570f6d77f9 Author: Alan Garny Date: Thu Dec 5 15:51:31 2019 +1300 Some minor cleaning up. commit 49fb9e0597d53326bf4ffef845346df8d66be5e9 Author: Alan Garny Date: Thu Dec 5 15:45:54 2019 +1300 Some minor cleaning up. commit beca477d5b954eee2d10ca5fe1839621ef976c6d Author: Alan Garny Date: Thu Dec 5 15:44:40 2019 +1300 Python support: use Pythonic names for our Python wrappers. commit e94ea9ac3fdd4cac86403f71362e6d6984a79862 Author: Alan Garny Date: Thu Dec 5 15:44:32 2019 +1300 Some minor cleaning up. commit 3f7806d2722e7972ff8c85762bb06591371d02c3 Author: Alan Garny Date: Thu Dec 5 13:41:58 2019 +1300 Some minor cleaning up. commit f1d124f663e53d6940fa03172a2c50970ec4d877 Author: Alan Garny Date: Thu Dec 5 13:21:45 2019 +1300 Python support: use Pythonic names for our OpenCOR Python module. commit 06c9b5cdbfa99fcf8788d0e75e4636f354800c61 Author: Alan Garny Date: Thu Dec 5 10:19:30 2019 +1300 Python support: provide some user documentation (#2216). commit f94529ea713e3e48c64676dab85815c9b55adff3 Author: Alan Garny Date: Wed Dec 4 11:32:15 2019 +1300 Qt WebKit: upgraded to v5.212.0-alpha3 (#2252). commit 70e4b07b56b9bdc54fb06bb7b1802bcaeea64441 Author: Alan Garny Date: Wed Dec 4 09:52:59 2019 +1300 Some minor cleaning up. commit c82e25f7f245c17ab3c1914139450a39c4d422ae Author: Alan Garny Date: Tue Dec 3 17:53:56 2019 +1300 Some minor cleaning up. commit 6a8a88ccdb9f6c10549cae7960c96627f689450e Author: Alan Garny Date: Tue Dec 3 17:02:02 2019 +1300 Some minor cleaning up. commit 7dc27ae057d776940fa6e924aa38f425e0c5e150 Merge: 04e6628f0 6f3e54972 Author: Alan Garny Date: Tue Dec 3 17:01:00 2019 +1300 Jupyter kernel: make sure that `implementation` and `implementation_version` are properly set (closes #2250). commit 6f3e54972a81f8409ebaeecb9fc69ab294321158 Author: Alan Garny Date: Tue Dec 3 16:27:10 2019 +1300 Slight update to our downloads page (#2250). commit 527e8837e489ceedaff111c539b84a2a4e51b42e Author: Alan Garny Date: Tue Dec 3 16:24:15 2019 +1300 Jupyter kernel: make sure that `implementation` and `implementation_version` are properly set (#2250). commit 4d5593934b171684635aa96fc4358f480d2f634f Author: Alan Garny Date: Tue Dec 3 16:21:00 2019 +1300 Some minor cleaning up. commit 04e6628f0fd208ef3e48df4088cfa2e9e33b2c51 Merge: fd809ff8a 029def067 Author: Alan Garny Date: Tue Dec 3 15:40:47 2019 +1300 Various improvements. commit 029def067ce23b076590843d06c089b5dc32c504 Author: Alan Garny Date: Tue Dec 3 15:05:39 2019 +1300 Some minor cleaning up. commit fce3a2ae1af10c6a57bd99d501eb006f44376f58 Merge: 91602edf4 fd809ff8a Author: Alan Garny Date: Tue Dec 3 15:04:31 2019 +1300 Merge branch '\''master'\'' into codefactor. commit 91602edf429d910827a03918b6171e9e8a371d4d Author: Alan Garny Date: Tue Dec 3 15:03:05 2019 +1300 Tests: make it possible to run specific tests. commit ee37f9fed38611c8b149180df59b53b56719efa3 Author: Alan Garny Date: Tue Dec 3 14:44:58 2019 +1300 Tests: no point in passing arguments to our tests. commit 511dc359a26c33b8934d8496c9e48346b71c96b8 Author: Alan Garny Date: Tue Dec 3 14:44:11 2019 +1300 Some minor cleaning up. commit fd809ff8ac3b7a1b87b847fd679b8522d79be0e1 Merge: bcacc483f cd3bf6f81 Author: Alan Garny Date: Tue Dec 3 14:34:22 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin (closes #2247). commit 61a48ed1c1dd601bfe3e7e4a207514ab4f6e7e42 Author: Alan Garny Date: Tue Dec 3 13:56:09 2019 +1300 Revert "Let ESLint know that our jsonData variable is used elsewhere." This reverts commit cf611adb97aadb9e5abb391331a99c093111bdcd. commit cf611adb97aadb9e5abb391331a99c093111bdcd Author: Alan Garny Date: Tue Dec 3 13:38:31 2019 +1300 Let ESLint know that our jsonData variable is used elsewhere. See https://eslint.org/docs/rules/no-unused-vars. commit 141b6a377b08b29fd29037cf67fc5a1c1a375802 Author: Alan Garny Date: Tue Dec 3 13:30:11 2019 +1300 Redundant blank line at the end of a code block should be deleted. See https://google.github.io/styleguide/cppguide.html#Vertical_Whitespace. commit b622b8e886c2d58c3d94f5aed18c9ed537f5356f Author: Alan Garny Date: Tue Dec 3 13:27:31 2019 +1300 Unnecessary escape character. See https://eslint.org/docs/rules/no-useless-escape. commit 0418c9a0010d9d5ce4a22846d730d7f60ac57a98 Author: Alan Garny Date: Tue Dec 3 13:26:23 2019 +1300 Don'\''t use units for zero length. See https://stylelint.io/user-guide/rules/length-zero-no-unit. commit f446e6d4782deac927fddf74d15a91b793e9560e Author: Alan Garny Date: Tue Dec 3 13:19:17 2019 +1300 Slight improvement to our COR page. We should prefer to @import (see http://www.stevesouders.com/blog/2009/04/09/dont-use-import/). commit cd3bf6f8181d9a712ae877be69054a7aabd5136e Author: Alan Garny Date: Tue Dec 3 13:02:36 2019 +1300 Slight update to our what is new page (#2247). commit ef0d0bce17f938ee3efb7fed134ead88c5c7fc13 Author: Alan Garny Date: Tue Dec 3 13:01:47 2019 +1300 Slight update to our downloads page (#2247). commit 090abdcc6884d5a7ccf4c30e465921cb7d51a647 Author: Alan Garny Date: Tue Dec 3 13:00:11 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin (#2247). commit d97d363d660c72eff066a8507b924cbda2b90082 Author: Alan Garny Date: Tue Dec 3 12:11:07 2019 +1300 Some minor cleaning up. commit 0cc36173871cc4dfc1868bffad2b70670c4b96bf Author: Alan Garny Date: Tue Dec 3 12:07:06 2019 +1300 Some minor cleaning up. commit bcacc483f7c21f6c4afee026153bae86b6bc5d6a Merge: ad0bae9fc b7ba21527 Author: Alan Garny Date: Tue Dec 3 09:59:00 2019 +1300 Don'\''t make our JupyterKernel and PythonShell plugins selectable (closes #2245). commit b7ba21527e391602897a2a9f1c4d0ea5ca6ccd98 Merge: a6ff41fc1 ad0bae9fc Author: Alan Garny Date: Tue Dec 3 09:20:17 2019 +1300 Merge branch '\''master'\'' into issue2245. commit a6ff41fc12d6c731877a0c128975df35b54c7994 Author: Alan Garny Date: Tue Dec 3 09:19:38 2019 +1300 Slight update to our what is new page. commit 60495e713dd74bcb7c1e50617dde967a5c5b536e Author: Alan Garny Date: Tue Dec 3 09:16:15 2019 +1300 Slight update to our downloads page (#2245). commit ad0bae9fc75d560d4e76e6d5f7fb40be092ec64d Author: Alan Garny Date: Mon Dec 2 17:47:04 2019 +1300 Some minor cleaning up. commit 341220da65ec282ff2d7869beea9dff3d6f7b38e Author: Alan Garny Date: Mon Dec 2 17:34:24 2019 +1300 Some minor cleaning up. commit 07bb1ccc687aa25a058d923f2bd434417fa962bb Author: Alan Garny Date: Mon Dec 2 17:33:27 2019 +1300 Some minor cleaning up. commit a3e3622ea77f1fec8be1b9fff25cc835dc7fad22 Author: Alan Garny Date: Mon Dec 2 17:18:06 2019 +1300 Don'\''t make our JupyterKernel and PythonShell plugins selectable (#2245). commit 74a77cb40b1222d7d9d8b4ea30bd1bcf1c2a8c7d Author: Alan Garny Date: Mon Dec 2 17:05:02 2019 +1300 Some minor cleaning up. commit 798c239e240c48e15605a702f45167759c4639b9 Author: Alan Garny Date: Mon Dec 2 16:11:55 2019 +1300 Some minor cleaning up. commit a7cba0dfa44c46edfff22221440add61f5cbc980 Author: Alan Garny Date: Mon Dec 2 16:11:14 2019 +1300 Some minor cleaning up. commit fabb238958182722eba44f3d8bed756f9fa67102 Merge: 01269be75 2fcb71697 Author: Alan Garny Date: Mon Dec 2 16:07:32 2019 +1300 Replaced `http` with `https` wherever possible (closes #2164). commit 2fcb7169715f02724ef175d7282ae9e3b24ffc71 Author: Alan Garny Date: Mon Dec 2 14:46:52 2019 +1300 Some minor cleaning up. commit 0f00f1afdd313a4d2c36ca7a0da9a3ccf1d646ab Author: Alan Garny Date: Mon Dec 2 14:23:38 2019 +1300 Python: slight update to our README.rst file. commit bc2cd1e227de3a40cca1dbe2507b56cab7c2fa85 Author: Alan Garny Date: Mon Dec 2 14:23:27 2019 +1300 Some minor cleaning up. commit 07069ae0427fe37ced823723a6f124cc20c8807b Author: Alan Garny Date: Mon Dec 2 14:23:05 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 6213dc216019dbabebfb4825941d47b5017d5ca5 Author: Alan Garny Date: Mon Dec 2 14:04:55 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 162b66569840e86aa794fbbb4014c2514337e7dd Author: Alan Garny Date: Mon Dec 2 13:55:31 2019 +1300 Some minor cleaning up. commit 6fb5cc17fdfeb735ce5f63b3697ecdec969b305a Author: Alan Garny Date: Mon Dec 2 13:51:48 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit b08e07f1b8a619b9278ecefba076fb7a5af0be3f Author: Alan Garny Date: Mon Dec 2 13:30:35 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 826dc77d8e39e61d99c31aa4f34d7db40969014e Author: Alan Garny Date: Mon Dec 2 13:30:09 2019 +1300 Some minor cleaning up. commit e503ced83fa6bb3309bfe7030e6a7e32b4957239 Author: Alan Garny Date: Mon Dec 2 13:28:17 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 0fec2b1f4244991e512a67e0b31e73e70b036d13 Author: Alan Garny Date: Mon Dec 2 13:22:41 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 1b2b7d9dd5c86aa9a810435ee322a17258582f38 Author: Alan Garny Date: Mon Dec 2 13:08:55 2019 +1300 License: removed double spaces. commit f6b7f2f54259611932df18842b54b4b43b564cd4 Author: Alan Garny Date: Mon Dec 2 12:57:31 2019 +1300 Removed `www.` wherever possible. commit a8ef7e1e1427cdda29e2f8009fd41b4ab936e426 Merge: 7b25a4144 01269be75 Author: Alan Garny Date: Mon Dec 2 12:43:42 2019 +1300 Merge branch '\''master'\'' into issue2164. commit 01269be751fec9e96d7ecc9d696df142d720fe0a Merge: 47e9fb2bc cfc38db33 Author: Alan Garny Date: Mon Dec 2 12:11:51 2019 +1300 Added LZMA extension to Python. commit 7b25a414465ed8f796b4fe42308fb4ec0a851f31 Author: Alan Garny Date: Mon Dec 2 12:08:25 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit cfc38db33f9d3aada078bb75c6ff8093322efaa4 Author: Alan Garny Date: Mon Dec 2 11:09:02 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit d2759ad34f8c1199febcbfcf195a06133a440b20 Author: Alan Garny Date: Mon Dec 2 11:00:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 5ade7acf51bbb70baa25ee38614bc2e0fc63516c Author: Alan Garny Date: Mon Dec 2 10:57:48 2019 +1300 Python package: slight cleaning up of our README.rst file. commit f69c0c7f71fd42b85d59eaa96bd9ae16ed852ac4 Merge: 3f3769f38 47e9fb2bc Author: Alan Garny Date: Mon Dec 2 10:51:10 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into python-lzma. commit 3f3769f388bd04ab217ef42d13c6310a3f219b39 Author: Alan Garny Date: Mon Dec 2 10:49:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 9a9c5d38c02439f42759b27692dcbbc56865e8f0 Author: Alan Garny Date: Mon Dec 2 10:39:07 2019 +1300 Python package: slight updates to our README.rst file. Just reformatted things and removed the Windows "dependencies" since they are actually taken care of in our CMakeLists.txt file. commit 47e9fb2bccb66dbd3313770db3e63a126e6170cc Merge: 1251c8660 edc9d8de1 Author: Alan Garny Date: Fri Nov 29 23:28:59 2019 +1300 CellML support: fixed an issue with the CellML API wrongly allowing code generation for non-runnable models (closes #2240). commit edc9d8de1faa95bef83156c50ed4ee5c2a6cf0f5 Author: Alan Garny Date: Fri Nov 29 19:58:39 2019 +1300 Slight update to our downloads page (#2240). commit d1faca68c6311565a2e8e53f2e7e4ac3831f9739 Author: Alan Garny Date: Fri Nov 29 19:53:38 2019 +1300 CellML API : new binaries for version 1.12 (#2240). commit e4f50865a81b1128322d0f6076eed4a62c64339b Author: Alan Garny Date: Fri Nov 29 19:53:07 2019 +1300 CellML API: prevent some warnings (and therefore an error) on Linux. commit ff7a761d53b667af53c1fbcfe3e6a52d8d7b58ee Author: Alan Garny Date: Fri Nov 29 19:25:35 2019 +1300 CellML API: prevent a warning (and therefore an error) on Windows. commit 442a1fc873881256f5f33467e3408f7c218c79d6 Author: Alan Garny Date: Fri Nov 29 14:23:30 2019 +1300 Improved our formatMessage() method. The second character must be lower case or space type. Also, we don'\''t change the casing if the message starts with "CellML". Indeed, should a message start with "CellML", we wouldn'\''t want it now to start with "cellML"...! commit 6af2bb317828fd64a2cdfaa7935a0af8fb18b75f Author: Alan Garny Date: Fri Nov 29 14:21:03 2019 +1300 Some minor cleaning up. commit d2bd5117cd4bf1ec3bb0985f638482569ab12bac Merge: dabd6c38b 1251c8660 Author: David Brooks Date: Thu Nov 28 23:20:22 2019 +1300 Merge branch '\''master'\'' into python-lzma commit dabd6c38bb798d69207ecc17abaa56f2e23216f0 Author: David Brooks Date: Thu Nov 28 23:17:43 2019 +1300 Python: note build dependencies. commit b553e91f08e0df575b847bf4506ff0677a799b10 Author: David Brooks Date: Thu Nov 28 23:01:45 2019 +1300 Python: use installed BZip2 library under Linux instead of building it ourselves. commit 01b0f1845a63628800f1972d9179d55819fdf959 Author: David Brooks Date: Thu Nov 28 22:58:51 2019 +1300 Python: tidy up building SQLite3 extension. commit 97b5e02700183abaad0dd0032ce995350fb666a0 Author: David Brooks Date: Thu Nov 28 22:55:01 2019 +1300 Python: include the `lzma` extension when building Python. commit 1251c86600cd7785d459b8436a2d1b2790b0e321 Merge: 6999d18c6 63da22bee Author: Alan Garny Date: Thu Nov 28 18:27:12 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 63da22bee3ddc0def96686f4144491346804bc61 Author: Alan Garny Date: Thu Nov 28 16:41:09 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 6999d18c61da43122deb7701d65e67b5b0792b94 Author: Alan Garny Date: Thu Nov 28 14:40:42 2019 +1300 Some minor cleaning up. commit 77e6d571f6c6e707c78fbc49934e4d8bc28180a9 Merge: b1e7f85da 0101a5457 Author: Alan Garny Date: Thu Nov 28 14:38:51 2019 +1300 Simulation Experiment view: don'\''t access our central widget directly anymore (closes #2218). commit 0101a54575d6441f80632f9435b2d772b51be216 Author: Alan Garny Date: Thu Nov 28 13:23:39 2019 +1300 Simulation Experiment view: don'\''t access our central widget directly (#2218). commit 7725addb198d5292e2d031dc26b377d44faba22c Author: Alan Garny Date: Thu Nov 28 13:23:34 2019 +1300 Some minor cleaning up. commit 276292a42521d3838ddecdbfb31d01310f94e04a Author: Alan Garny Date: Thu Nov 28 12:49:40 2019 +1300 Slight update to our downloads page (#2218). commit 2ba34dea9d7519042fed35f9e8b3d40318e51d8c Author: Alan Garny Date: Thu Nov 28 12:47:44 2019 +1300 Some minor cleaning up. commit 4dededb601e34bb29bb4a0604c9fb633f18442e2 Author: Alan Garny Date: Thu Nov 28 12:40:07 2019 +1300 Simulation Experiment view: don'\''t access our central widget directly (#2218). commit 214be55171b7e5088fe9e577a36ea5badad3d9f4 Author: Alan Garny Date: Thu Nov 28 11:51:03 2019 +1300 Simulation Experiment view: don'\''t access our central widget directly (#2218). commit 4f8f88fa21687f9ba04128084e6af659a5a6a8e4 Author: Alan Garny Date: Thu Nov 28 11:49:23 2019 +1300 Some minor cleaning up. commit b1e7f85daefbe1869c81a07a8f721e64a593c401 Author: Alan Garny Date: Thu Nov 28 10:44:08 2019 +1300 Some minor cleaning up. commit a5087ee3051e1d50c6703bf023677b676385b7ac Merge: 734637cd0 266db8d9c Author: Alan Garny Date: Thu Nov 28 10:40:58 2019 +1300 Simulation support: don'\''t require all our solvers to be installed anymore (closes #2234). commit 266db8d9ce20f8c96f921cfa1dd236d7c1307ea1 Author: Alan Garny Date: Thu Nov 28 09:43:22 2019 +1300 Slight update to our downloads page (#2234). commit 7582459fbba18152c93a00d7cfa5cae508cbe015 Author: Alan Garny Date: Thu Nov 28 09:22:26 2019 +1300 Plugin manager: all our solvers should be loaded when in CLI mode (#2234). This ensures that we can do whatever we want from Python when in "CLI mode". If we are in GUI mode, we want to allow the user to be able to select whatever solver s/he wants to have. When it comes to Python support, if a solver is not loaded but needed by a Python script, then we will get an error (see commit d51e9669d). commit d51e9669d6146086c1059d9d4c6c828764de3406 Author: Alan Garny Date: Wed Nov 27 19:37:18 2019 +1300 Simualtion Experiment view: improved our our simulation Python wrapper (#2234). This needed since different types of issues may occur, e.g. a solver is not present. This also means that our Python console now generates the same error as our Simulation Experiment view. commit e01a134878bdb3d182faa115a24f640e1e99999c Author: Alan Garny Date: Wed Nov 27 19:30:39 2019 +1300 Some minor cleaning up. commit 7a893ba7c3e2234640b963148ab894828a7042fe Author: Alan Garny Date: Wed Nov 27 19:22:57 2019 +1300 Some minor cleaning up. commit dd3c836461e6500e5561d462db7c37d4cd21c333 Author: Alan Garny Date: Wed Nov 27 18:11:42 2019 +1300 Some minor cleaning up. commit 18a77b66e416d1f204a83665bdcbe091745f402a Author: Alan Garny Date: Wed Nov 27 17:38:02 2019 +1300 Simulation Experiment view: make sure that we always update ourselves when our enabled state changes. commit 24abad8c6bae61a5d97f917ec5060795cddd2407 Author: Alan Garny Date: Wed Nov 27 17:23:51 2019 +1300 Simulation Experiment view: reverted commit af84fb6 and properly fixed the issue we had. Indeed, it definitely didn'\''t fix our problem while we do (should!) now. commit 5c967de7deaaeb71079a82dadb59865ddb51ea1a Author: Alan Garny Date: Wed Nov 27 17:22:52 2019 +1300 Some minor cleaning up. commit e38b6effa76f8886e23f3a0e108c5a9b3adbbf23 Author: Alan Garny Date: Wed Nov 27 15:56:48 2019 +1300 Simulation support: don'\''t require all our solvers to be installed (#2234). commit 734637cd03358da2381a7c441e4367110b039661 Merge: bbd473b5b 373d1d4c1 Author: Alan Garny Date: Wed Nov 27 15:44:35 2019 +1300 Python support: merged duplicated code (closes #2225). commit 373d1d4c15c36c184138efcb556825e3bdbc01a9 Author: Alan Garny Date: Wed Nov 27 14:18:42 2019 +1300 Slight update to our downloads page (#2225). commit 4d22669524d067ed4add897b6f5eaa7e033099b1 Author: Alan Garny Date: Wed Nov 27 14:17:15 2019 +1300 Some minor cleaning up. commit 28002af3bae8f5437ee658bcf2885aa7b98c0ccc Author: Alan Garny Date: Wed Nov 27 14:09:57 2019 +1300 Python support: merge duplicated code (#2225). commit 9d03e24159cd39895540565c745801d32b2a7180 Author: Alan Garny Date: Wed Nov 27 13:08:17 2019 +1300 Some minor cleaning up. commit 1d7f062a39ec969dff47e33c1332e58abc15a7e9 Author: Alan Garny Date: Wed Nov 27 13:02:38 2019 +1300 Python support: merge duplicated code (#2225). commit ccc0719fb859fca831c62eddd7f58bb6a9a4668b Author: Alan Garny Date: Wed Nov 27 12:12:10 2019 +1300 Python support: merge duplicated code (#2225). commit 21cf3e262c458aab86bf815528dc2d8923ef45d7 Author: Alan Garny Date: Wed Nov 27 10:31:02 2019 +1300 Python support: merge duplicated code (#2225). commit 0c1ec6de9a7eded9067070f84d64135f0a847a3c Author: Alan Garny Date: Wed Nov 27 09:50:16 2019 +1300 Python support: merge duplicated code (#2225). commit 303cc0b561a024eee8399f6d699fb075f3a32413 Author: Alan Garny Date: Wed Nov 27 09:42:03 2019 +1300 Python support: merge duplicated code (#2225). commit f2accb69b303da0e641912970d2fd5218bd005d5 Merge: d8cad0458 bbd473b5b Author: Alan Garny Date: Tue Nov 26 18:10:16 2019 +1300 Merge branch '\''master'\'' into issue2225. commit bbd473b5b2d0bfdda337c29647acad85f588b82c Merge: 5a33bd367 1d194e025 Author: Alan Garny Date: Tue Nov 26 18:09:08 2019 +1300 Cleaning up. commit d8cad0458c9746dab86a680cd6f375b8e5ccde34 Author: Alan Garny Date: Tue Nov 26 17:52:05 2019 +1300 Moved (and renamed some of) our inline files to [OpenCOR]/src/misc. Indeed, some inline files that we will want to have (e.g. for opensimulation) are going to be needed by different plugins, so... commit b1f35b60d5e58cb6e18672c8f5a582d63c4bc556 Author: Alan Garny Date: Tue Nov 26 17:41:14 2019 +1300 Packaging: make sure that we can create our NSIS-based installer on Windows. CMAKE_INSTALL_DEFAULT_COMPONENT_NAME is needed on macOS for productbuild to work fine, but it'\''s somehow causing us problems with NSIS on Windows, so... commit 2302cd2246833af9f18d2377fb7143fa6430df94 Author: Alan Garny Date: Tue Nov 26 17:07:43 2019 +1300 Moved our ICU and Mesa libraries to a better place. commit 38b9c7b412145a0155647b41c6bd319abaaba5ca Author: Alan Garny Date: Tue Nov 26 16:40:34 2019 +1300 Python support: prevent duplicated code (#2225). commit d37e7b4390ab5b3a65d8e58ce5286f1a5e460977 Author: Alan Garny Date: Tue Nov 26 16:21:36 2019 +1300 Python support: prevent duplicated code (#2225). commit 1d194e025643ea99daba1fc6c46d759aa603a73a Merge: 96c1dd918 5a33bd367 Author: Alan Garny Date: Tue Nov 26 16:15:50 2019 +1300 Merge branch '\''master'\'' into cleaning-up. commit 5a33bd3673ad29737f13c25ee44f6bb76a5b1556 Merge: cdbf2d18a 4ae5bb107 Author: Alan Garny Date: Tue Nov 26 16:14:57 2019 +1300 Some minor cleaning up. commit 96c1dd918f4a1cdda35257a6f4d305dd13447320 Author: Alan Garny Date: Tue Nov 26 16:14:16 2019 +1300 Make sure that our preferred C and C++ compilers are used to build external projects. We now guarantee this for CMake-based projects, but not sure about QMake-based ones...!? commit e1dd907ce270975719da8ca66e0bf54df8293441 Author: Alan Garny Date: Tue Nov 26 15:45:40 2019 +1300 Python support: prevent duplicated code (#2225). commit 4ae5bb1079291044b99e70b35e87c118c54ccb0b Merge: d67a3bcd3 cdbf2d18a Author: Alan Garny Date: Tue Nov 26 14:51:27 2019 +1300 Merge branch '\''master'\'' into issue2224 commit d67a3bcd31a8c8cd6e74d27dbf165d1aac541d8f Author: Alan Garny Date: Tue Nov 26 14:41:54 2019 +1300 Jupyter kernel: remoevd our README.rst file (#2224). It contained some information about debugging a Jupyter notebook, but things have changed a bit and I wasn'\''t able to get a Jupyter connection file using the instructions (couldn'\''t find the debug output?!). Either way, we should be able to come up with up-to-date debugging information when actually needed. commit cdbf2d18aef06631e011903ac2a6afb6f69727af Merge: aef10983a c167e3663 Author: Alan Garny Date: Tue Nov 26 14:32:56 2019 +1300 Python: build and link to our libbz2 under Windows and Linux. commit bf4f5506f83ecc474b8be8cc0d01d4c126c268c8 Author: Alan Garny Date: Tue Nov 26 14:10:03 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file (#2224). commit fcbcf48f77c105ad856bca41f40d381353395f35 Author: Alan Garny Date: Tue Nov 26 14:06:39 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file (#2224). commit b3010e4b9f183802db5c9ac332bcce69421edb3f Author: Alan Garny Date: Tue Nov 26 14:00:25 2019 +1300 Jupyter kernel: renamed our NOTES.rst file to README.rst (#2224). commit c167e36635c5b5fbf1ff745b6fd8c565af019929 Author: Alan Garny Date: Tue Nov 26 13:58:13 2019 +1300 Python: new Windows binaries. commit 8df7378889d2d3ae0002c2219f29d545ea4cbbec Author: Alan Garny Date: Tue Nov 26 13:53:47 2019 +1300 Python package: we definitely need to make sure that our package'\''s binaries directory exists. commit 333c5a063514da8c36ae859d874dc45e41b4055f Author: Alan Garny Date: Tue Nov 26 13:04:22 2019 +1300 Some minor cleaning up. commit 8f561b7c788b5002b5a1d8d6573593727ed77839 Merge: b592228e2 b75be1f52 Author: Alan Garny Date: Tue Nov 26 12:52:09 2019 +1300 Merge branch '\''python_bzip2'\'' of https://github.com/dbrnz/opencor into python_bzip2. commit b592228e236525ebfb576d13ee23aee20eda0c38 Author: Alan Garny Date: Tue Nov 26 12:51:08 2019 +1300 Python package: some minor cleaning up. commit b75be1f52cbcd29d4d401f0ec2fffcac35b5914b Author: David Brooks Date: Tue Nov 26 12:38:19 2019 +1300 Python: there'\''s no need to create the external binaries directory. commit b48387f0806877ce52143d5590ebb902775cbc4c Author: Alan Garny Date: Tue Nov 26 12:28:49 2019 +1300 Python: new Linux binary. commit c7a5ada82b6f37dbfdbdd3d09b9fd151196def63 Merge: a06e35646 aef10983a Author: David Brooks Date: Tue Nov 26 10:44:59 2019 +1300 Merge branch '\''master'\'' into python_bzip2 commit a06e35646467edeeac20aa6c08298c51c06d5c32 Author: David Brooks Date: Tue Nov 26 09:48:22 2019 +1300 Python: use correct name for bzip2 library built under Windows. commit b1ac6ca48d6b05500bd0f892b3515ffdeb6f55ea Author: David Brooks Date: Tue Nov 26 09:47:41 2019 +1300 Python: use our bzip2 repository. commit aef10983aaaa82b926d1adc847036e8a55efa2fb Merge: a67d0aa58 1515d523b Author: Alan Garny Date: Tue Nov 26 08:53:00 2019 +1300 Mesa: upgraded to version 19.2.6 (closes #2230). commit 1515d523b0daa715ae2139ca81d12c0323956e64 Author: Alan Garny Date: Mon Nov 25 18:14:14 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 35ffce1a29c05b02a68ee698342197938cd70ce0 Author: Alan Garny Date: Mon Nov 25 18:07:32 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit a15bcb4d03eca4be2c8cdd899bd798364d53dedc Author: Alan Garny Date: Mon Nov 25 17:51:24 2019 +1300 Mesa: binary for version 19.2.6 (#2230). commit eea0ecf5d6d5fc95e6b6a9a30b675d366ba3225f Merge: 7913c7846 a67d0aa58 Author: Alan Garny Date: Mon Nov 25 17:44:10 2019 +1300 Merge branch '\''master'\'' into issue2230. commit 7913c784620bebbb30c0307cc30d0e7d035de830 Author: Alan Garny Date: Mon Nov 25 17:42:13 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 358349c9204fc2e27d42822189aec6d248774073 Author: Alan Garny Date: Mon Nov 25 17:41:38 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit e1f59cfb75414e967993f0d48f8302648bbe1a1b Author: Alan Garny Date: Mon Nov 25 17:39:08 2019 +1300 Some minor cleaning up. commit a67d0aa589083d5a4620156f1f208c584ea02292 Merge: deb571a0b d09b69e66 Author: Alan Garny Date: Mon Nov 25 17:34:19 2019 +1300 macOS packaging: replaced our use of PackageMaker with that of productbuild (closes #2210). commit 847cb9b5a5fb17dcbcacef29c0297edc996c82e0 Author: Alan Garny Date: Mon Nov 25 17:25:23 2019 +1300 CMake: only install our Python-related scripts if we built OpenCOR with Python support. commit ad331eeff41a663a251398edfe7cb99802abfb0a Author: Alan Garny Date: Mon Nov 25 17:21:49 2019 +1300 Slight update to our downloads page (#2230). commit 5fdff63c2eeead9f55cf2f24e2f132f4b668b95f Author: Alan Garny Date: Mon Nov 25 17:20:04 2019 +1300 Mesa: binary for version 19.2.6 (#2230). commit 85774812cf68cd23c7a7ef23a659e36cbaf796b7 Author: Alan Garny Date: Mon Nov 25 17:06:24 2019 +1300 Mesa: upgraded to version 19.2.6 (#2230). commit d09b69e664fa3d7092d35359bf4fc43ca1fd83a7 Author: Alan Garny Date: Mon Nov 25 16:19:44 2019 +1300 Slight update to our downloads page (#2210). commit 3a2f3cce5dfad50eed62e1f6a7d36ddcb002c46e Merge: a24ec55f7 deb571a0b Author: Alan Garny Date: Mon Nov 25 15:50:45 2019 +1300 Merge branch '\''master'\'' into issue2210. commit deb571a0ba8857301cfea0613c650d1ab62597bb Merge: 7c5f4884c 37d250636 Author: Alan Garny Date: Mon Nov 25 15:50:06 2019 +1300 Some minor cleaning up. commit a24ec55f79a4c8cf0d68852af980b7bab3fae0f6 Author: Alan Garny Date: Mon Nov 25 15:48:03 2019 +1300 macOS packaging: replace our use of PackageMaker with that of productbuild (#2210). commit 37d250636d04c91ea26c935fe5a7c08609131e3d Merge: 4a66e86af 7c5f4884c Author: Alan Garny Date: Mon Nov 25 15:16:15 2019 +1300 Merge remote-tracking branch '\''upstream/master'\''. commit 7c5f4884c0cfa36b8f8672e1db8539b15f902281 Merge: be13ada23 bf231de79 Author: Alan Garny Date: Mon Nov 25 15:15:24 2019 +1300 Apply fixes from CodeFactor commit 4a66e86af6ef695781e38f35f632ab63ddecd051 Author: Alan Garny Date: Mon Nov 25 14:39:47 2019 +1300 Some minor cleaning up. commit d1692ff9c28f9ada697aa85459edb504dae32ca1 Author: Alan Garny Date: Mon Nov 25 14:35:02 2019 +1300 Some minor cleaning up. commit 75f6a96caaefe18189001313b61e5f074e26bb97 Author: Alan Garny Date: Mon Nov 25 14:23:44 2019 +1300 Some minor cleaning up. commit 90c29024bd7e943fb3e133fa9765b1ef158d22cf Author: Alan Garny Date: Mon Nov 25 14:22:54 2019 +1300 Some minor cleaning up. commit ee1ae8da7d9b122c8f555ed783759e2338200046 Author: Alan Garny Date: Mon Nov 25 14:20:09 2019 +1300 Some minor cleaning up. commit af54d4b2411fe6da4337135e2c8a59bcc46eccde Merge: 480a54497 217e8c4b4 Author: Alan Garny Date: Mon Nov 25 14:17:58 2019 +1300 Apply fixes from CodeFactor. commit 217e8c4b47dd9b00c36866330725726ddec58742 Author: codefactor-io Date: Mon Nov 25 01:17:33 2019 +0000 [CodeFactor] Apply fixes commit 480a54497d9651b0fbdbc3df8bdb7293bace84fd Merge: be13ada23 d8391f5e8 Author: Alan Garny Date: Mon Nov 25 14:16:43 2019 +1300 Apply fixes from CodeFactor. commit d8391f5e89b2e77acf94be3b1ab414b8a42b969a Author: codefactor-io Date: Mon Nov 25 01:15:47 2019 +0000 [CodeFactor] Apply fixes commit bf231de7934c86de6b9622dbc70ac6a56f788c73 Author: codefactor-io Date: Mon Nov 25 01:12:47 2019 +0000 [CodeFactor] Apply fixes commit d8aa1a539b43215c0d5ce1ff5b18fa68b9242faa Author: Alan Garny Date: Mon Nov 25 13:11:36 2019 +1300 macOS packaging: slight improvement to the way we package OpenCOR on macOS. This is basically the proper way to handle packaging using CPack rather than customising things in our package script. commit c66ecc5b6e21ab812bf670d88b8668d8846923e9 Author: Alan Garny Date: Mon Nov 25 11:40:34 2019 +1300 macOS: added support for SED-ML files and COMBINE archives in our Info.plist file. commit 93244c571cb8ef406d64c62dac4ba039e47b5a15 Author: Alan Garny Date: Mon Nov 25 10:37:03 2019 +1300 macOS: specify, in our Info.plist file, the minimum version of macOS that we support. commit 336983c85f57250821762ab85790dff2d02d1197 Author: Alan Garny Date: Mon Nov 25 10:36:18 2019 +1300 macOS: make sure that we support high resolution in our Info.plist file. It looks like it was working fine until now, but it can'\''t harm having this key set. commit bf40e3c5cab262c76db09c5693d8087a59a8ef87 Author: Alan Garny Date: Mon Nov 25 10:31:45 2019 +1300 macOS: slight update to our Info.plist file. commit 99339ec2f737ffd66192e5e7c73dea304229431d Author: Alan Garny Date: Mon Nov 25 10:21:45 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit 4c0c949c90ccfae69bc603a2c6c4b6bfeb3cddfe Author: Alan Garny Date: Mon Nov 25 10:05:52 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit cd1365a3c4cd2133a18012b49de32bc709911a5f Author: Alan Garny Date: Mon Nov 25 09:49:46 2019 +1300 macOS: alphabetically order the keys in our Info.plist file. commit 34d3d361d79ba45fd7a18726b5d6d67d0d253801 Author: David Brooks Date: Sun Nov 24 09:24:51 2019 +1300 Python: use the same compiler for building Python as used for building OpenCOR. commit 1e691e6d953849818ad4733a18463f85569a2363 Author: David Brooks Date: Fri Nov 22 16:48:06 2019 +1300 Python: tidy up building of bzip2. commit e53db9f54c6f5ea09628ec288abef8e83c202d68 Author: David Brooks Date: Fri Nov 22 16:29:54 2019 +1300 Merge branch '\''master'\'' into python_bzip2 commit 818edc3f97c03e903694274ade20df13729eb357 Author: David Brooks Date: Fri Nov 22 16:08:03 2019 +1300 Python: built bzip2 library includes version on Linux. commit be13ada23b22b5e5984e4ada7a9b892e15580234 Merge: bf13bef1d f95de828f Author: Alan Garny Date: Fri Nov 22 16:00:00 2019 +1300 CMake: specify the compiler we want to use. commit 3a362e1beb2b1da850ec7fbe0ec9916fa5c490a3 Author: David Brooks Date: Fri Nov 22 15:56:20 2019 +1300 Python: we need a shared bzip2 library for Linux. commit 9d22d514d57f72554269e94828b235acbd337306 Author: David Brooks Date: Fri Nov 22 15:30:27 2019 +1300 Python: build bzip2 library under Windows and Linux. commit f95de828f12af07fe8e655d3590a0f077c834eb0 Author: Alan Garny Date: Fri Nov 22 15:26:20 2019 +1300 CMake: specify the compiler we want to use. commit 8654f205f7190d65c8846e0bb8687bd29a9c4285 Author: Alan Garny Date: Fri Nov 22 14:22:04 2019 +1300 CMake: specify the compiler we want to use. commit cf4fde03949ba88e9899f73bf46e4e8bccf2e7ab Merge: e762a5c51 bf13bef1d Author: Alan Garny Date: Fri Nov 22 14:18:32 2019 +1300 Merge branch '\''master'\'' into set_compiler commit bf13bef1dce409ffa66ac6cd00e0588f0034e6d5 Merge: 8d3fe9f5b 3fea2f2a4 Author: Alan Garny Date: Fri Nov 22 14:17:41 2019 +1300 Python: Upgraded Jupyter notebook to 6.0.2. commit e762a5c51c3b9f7cb9169242e5b7b57453845176 Author: David Brooks Date: Fri Nov 22 12:34:29 2019 +1300 CMake: specify the compiler we want to use. commit 3fea2f2a4cda0a3efd4e5ee386e72e0194472c11 Author: David Brooks Date: Fri Nov 22 12:23:02 2019 +1300 Python: Upgrade Jupyter notebook to 6.0.2. See https://github.com/jupyter/notebook/blob/master/docs/source/changelog.rst for details. commit 8d3fe9f5b9510a1643f750c581e8159918b2d6b2 Merge: 4048a366b 6a34f01f0 Author: Alan Garny Date: Fri Nov 22 11:13:00 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (closes #2219). commit 6a34f01f007ad6a219211f6ea48c43458588411e Author: Alan Garny Date: Fri Nov 22 10:18:04 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (#2219). commit 5fc09367422414f52e655e280452d00702c7f3ea Author: Alan Garny Date: Fri Nov 22 10:06:34 2019 +1300 Slight update to our downloads page (#2219). commit e6c3c645ef79b8c5fc9e4370e018ae4d9a663c5c Author: Alan Garny Date: Fri Nov 22 10:03:41 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (#2219). commit 4048a366b3ed5b10109b80cc87cf04414dd4a3f8 Author: Alan Garny Date: Thu Nov 21 16:30:36 2019 +1300 Python: updated our test Python script. So that our remote files now point to our master branch. commit 6729b7432e263680f31904a022def936efa21b61 Merge: 76fbc4c37 257054155 Author: Alan Garny Date: Thu Nov 21 14:21:40 2019 +1300 General: added support for Python (closes #1255). commit 25705415599102f40df8362342d80ce705cb6dfb Author: Alan Garny Date: Thu Nov 21 13:25:44 2019 +1300 Slight updates to our downloads and what is new pages (#1255). commit a0ee6fbe58eb8a7f39df8ff7a79d7a87cb1d6f87 Author: Alan Garny Date: Thu Nov 21 12:35:24 2019 +1300 Some minor cleaning up. commit 79e61f8de0f9afbef8104316ad5a49cf7ff906e3 Author: Alan Garny Date: Thu Nov 21 12:19:06 2019 +1300 PythonPackages and PythonQt packages: updated our binaries. commit d2f3b5ba909ea5309ad50a2aecfa97fb25669c19 Author: Alan Garny Date: Thu Nov 21 11:49:29 2019 +1300 Python package: updated our binaries. commit 130064adc7f8e1402a3e043d1015d4b911ec694e Author: Alan Garny Date: Thu Nov 21 11:31:56 2019 +1300 Some minor cleaning up. commit f2d16f01a646f56f1b4d6c057c3438baf2ee7195 Author: Alan Garny Date: Thu Nov 21 10:54:15 2019 +1300 Some minor cleaning up. commit 561b9841725ffdf14efb67c477027d44fd2816e0 Author: Alan Garny Date: Thu Nov 21 10:24:25 2019 +1300 Some minor cleaning up. commit 5e363992a192fdc9474c4ed27d2ca059e79c9959 Author: Alan Garny Date: Thu Nov 21 10:05:49 2019 +1300 Some minor cleaning up. commit ef3ccfbe58b37ea2750de4ca8cde567a425791d5 Author: Alan Garny Date: Thu Nov 21 09:47:39 2019 +1300 Some minor cleaning up. commit a5c5d38e7dc7cff0b777e4d6205c4ad9c83d543a Author: Alan Garny Date: Wed Nov 20 18:49:16 2019 +1300 Python interface: it shouldn'\''t rely on a plugin being installed! commit a0c591925e09d824806b07d40daffe8e1600a28c Author: Alan Garny Date: Wed Nov 20 18:48:55 2019 +1300 Some minor cleaning up. commit b3c63862b5bc49bd16ec27bee4b8efcfe1b0663e Author: Alan Garny Date: Wed Nov 20 18:18:31 2019 +1300 Python: removed unneeded patch files for Matplotlib. commit 9dad9568ea8aa87f5e73c18eabb45e97e49e842f Author: Alan Garny Date: Wed Nov 20 17:54:03 2019 +1300 Some minor cleaning up. commit 5d8846b7fcfcf649043605463fd655b5aa6d5ce7 Author: Alan Garny Date: Wed Nov 20 17:30:15 2019 +1300 Some minor cleaning up. commit 7f8c2142919c302b77fed948b3342dceb00e5201 Author: Alan Garny Date: Wed Nov 20 17:12:31 2019 +1300 Some minor cleaning up. commit 8a646eb3a35e01a59d3b0171d33b30ec2f62fcde Author: Alan Garny Date: Wed Nov 20 17:05:59 2019 +1300 Some minor cleaning up. commit 8e7f704456ecfcde47736d146a4c53c3b2a3c872 Author: Alan Garny Date: Wed Nov 20 16:29:25 2019 +1300 Simulation support (Python): properly handle the addition of a run to a simulation prior to running that simulation. commit 39954b74039bc42b48509f83d5eaf06fb5c52a16 Author: Alan Garny Date: Wed Nov 20 15:56:48 2019 +1300 Simulation support (Python): reworked our clearResults() wrapper. Indeed, it was working as expected from the GUI, i.e. the results were properly cleared, but not from a Python shell since we used to emit a signal that was only handled by our Simulation Experiment view. commit 1523fd27178ea68d4410b757b0a14ff540efc4bb Author: Alan Garny Date: Wed Nov 20 15:26:22 2019 +1300 Revert "Some minor cleaning up." This reverts commit 90288a41778e6f0cb51db61de73d627071658a20. commit 5ae000982104a0ed159d1525d2c217929e4cec02 Author: Alan Garny Date: Wed Nov 20 15:06:23 2019 +1300 Some minor cleaning up. commit 90288a41778e6f0cb51db61de73d627071658a20 Author: Alan Garny Date: Wed Nov 20 15:02:59 2019 +1300 Some minor cleaning up. commit 96c7109786c23aa4c3ccde3d37add0988daccbd0 Author: Alan Garny Date: Wed Nov 20 14:28:19 2019 +1300 Some minor cleaning up. commit 59178ab26ed0e65eb6fd7669b5bfdbf5adcf86ab Author: Alan Garny Date: Wed Nov 20 14:14:13 2019 +1300 Simulation support (Python): renamed resetParameters() to reset(). And allow for everything, or not, to be reset, i.e. mimic what the GUI can do. commit e3d183190b4dd41f1c8d003874dffe99ec1b286d Author: Alan Garny Date: Wed Nov 20 14:12:35 2019 +1300 Some minor cleaning up. commit b2b1b3628de377899f24d2a7e2f5868503859382 Author: Alan Garny Date: Wed Nov 20 14:04:21 2019 +1300 Some minor cleaning up. commit 6e27f9d6b4141305684fbbc15e5e52806a1183a7 Author: Alan Garny Date: Wed Nov 20 14:00:49 2019 +1300 Some minor cleaning up. It was last used in openRemoteSimulation() in [OpenCOR]/src/plugins/support/SimulationSupport/src/simulationsupportpythonwrapper.cpp, which is now gone. commit 6f701b063cfad6304bafe06936b3a0a5a58008d6 Author: Alan Garny Date: Wed Nov 20 13:57:39 2019 +1300 Some minor cleaning up. commit ec909942f43198f4446eb0b2ac446ccddbf78b86 Author: Alan Garny Date: Wed Nov 20 13:46:24 2019 +1300 Simulation support: merged our openSimulation and openRemoteSimulation Python wrappers. commit 9f0c9b24c714b7703bb91bc84e23e54114cd23de Author: Alan Garny Date: Wed Nov 20 12:06:40 2019 +1300 Some minor cleaning up. commit 555b9e00069d1ce436932bebb19978a72debef8b Author: Alan Garny Date: Wed Nov 20 11:29:16 2019 +1300 Python: updated our Lorenz Python script. Also handle remote files. commit d04a644d6e938e1593d4dd68969a4598993af4fe Author: Alan Garny Date: Wed Nov 20 11:10:57 2019 +1300 Some minor cleaning up. commit 471399db1bd24d201b7ee4335d06345643f166ce Author: Alan Garny Date: Wed Nov 20 10:46:01 2019 +1300 Some minor cleaning up. commit af84fb65982a6e9cb3c994c608acc0103ebc8e4c Author: Alan Garny Date: Wed Nov 20 10:45:44 2019 +1300 Simulation Experiment view: fixed a small issue with the tracking of the end of a simulation. If we were to run several simulations at the same time, we might have ended up with one of them having its progress updated *after* the simulation finished. commit 7056eaf2c9d5067206a42c4b07770fa4aaeb7787 Author: Alan Garny Date: Wed Nov 20 10:09:33 2019 +1300 Some minor cleaning up. commit 2676b35ecb46067dafc03cb14ef74427f037eb61 Author: Alan Garny Date: Wed Nov 20 09:41:13 2019 +1300 Python: updated our Lorenz Python script. Use our new OpenCOR module name. commit 08c7c1aeab53ace6dee7ad5ef3796f3d46d13470 Author: Alan Garny Date: Wed Nov 20 09:41:00 2019 +1300 Python: updated our Lorenz Python script. Don'\''t generate a 3D plot, so that we can also run our script from a Python shell. commit b0a6ecc21152346be0366685d7409c949e6e6935 Author: Alan Garny Date: Wed Nov 20 09:40:07 2019 +1300 Python: respecting PEP 8 when it comes to the name of our OpenCOR module. commit 8dfd52aba0842f34a1c703b5c03fe8d8d17240a2 Author: Alan Garny Date: Wed Nov 20 09:38:46 2019 +1300 Some minor cleaning up. commit e629ca0bbd516e1fb53f98ffb8129273c362d60b Author: Alan Garny Date: Wed Nov 20 09:22:51 2019 +1300 Some minor cleaning up. In fact, and as a general rule, we should always use full class names in signals/slots. Simple as that. commit 0f0bc5a64b51fe40b46d86bb9613ba78d96c8f74 Author: Alan Garny Date: Wed Nov 20 09:19:11 2019 +1300 Python: PythonQt requires full class names for result types. commit 9ab91ae64bbd8cba9a468e3a62680c7a7b4176ba Merge: 0d2512b7e 4835353ca Author: Alan Garny Date: Wed Nov 20 09:16:42 2019 +1300 Python: PythonQt requires full class names for result types. commit 4835353ca4dde56fcd4f953156dfea740f3ef35a Author: David Brooks Date: Wed Nov 20 08:38:01 2019 +1300 Python: PythonQt requires full class names for result types. commit 0d2512b7e2c8373812f919647a9b1ed4002e75ae Author: Alan Garny Date: Tue Nov 19 19:05:29 2019 +1300 Python: updated our Lorenz Python script. commit 87a2257b51c5bda6580c08a0ce35d3c2894a7226 Author: Alan Garny Date: Tue Nov 19 18:38:49 2019 +1300 Some minor cleaning up. commit 4535f126f84013ffd3b94715bc6b5fcec4773968 Author: Alan Garny Date: Tue Nov 19 18:35:24 2019 +1300 Some minor cleaning up. commit 1ce2114b558ba04872f3009075b983bfad6b88a9 Author: Alan Garny Date: Tue Nov 19 18:23:52 2019 +1300 Some minor cleaning up. commit 50f1f0520a7e59b03c377822b3008fa22f885417 Author: Alan Garny Date: Tue Nov 19 18:23:41 2019 +1300 Some minor cleaning up. commit f94484a9663f6ccda45e0fd6507009ad7bf1564f Author: Alan Garny Date: Tue Nov 19 18:10:10 2019 +1300 Some minor cleaning up. commit 8df403c61574b29746488af7d32c16a34eadc4fb Author: Alan Garny Date: Tue Nov 19 18:08:53 2019 +1300 Python: updated our Lorenz Python script. commit 9419001f4d8aa850a1fef5e6e9e476d16085f670 Author: Alan Garny Date: Tue Nov 19 18:08:12 2019 +1300 Added a Lorenz COMBINE archive. commit 302371495c06edf7f1fdcfc637dd655af63293b6 Author: Alan Garny Date: Tue Nov 19 18:08:02 2019 +1300 Lorenz SED-ML file: added some title to our plots. commit 641af0ed1a94b28c9e7334ef9a6100a244863350 Author: Alan Garny Date: Tue Nov 19 15:09:31 2019 +1300 Some minor cleaning up. commit 9a6b83e77a16aa49acdbe871b62eb6b7d935720c Author: Alan Garny Date: Tue Nov 19 13:42:59 2019 +1300 Some minor cleaning up. commit 82b59e89ca47d20a19569e2ee8a530b068674e27 Author: Alan Garny Date: Tue Nov 19 13:27:43 2019 +1300 Some minor cleaning up. commit 48f052ec9039557bf28de4caedd1fda4f901540f Author: Alan Garny Date: Tue Nov 19 13:24:02 2019 +1300 Web Browser window: remove our support for Python. Indeed, there is, at this stage at least, no need for accessing our Web Browser window from Python. commit 82bceeaf9d2d7e7a209873677c75943749d9f540 Author: Alan Garny Date: Tue Nov 19 13:12:48 2019 +1300 Some minor cleaning up. commit e9a28d0bdc3ee0683ac914823ac729eaaf1a1f9f Author: Alan Garny Date: Tue Nov 19 11:46:36 2019 +1300 Some minor cleaning up. commit 29f78b7f53c17030edec0f08a45e6ab697915e4b Author: Alan Garny Date: Tue Nov 19 11:42:52 2019 +1300 Added a Lorenz CellML and SED-ML files, as well as a corresponding Python script and Jupyter notebook. The idea of the Python script will be to test all of our Python wrappers. commit 98eeeadb7bc6e654007a6e225bfef1302763e41a Author: Alan Garny Date: Tue Nov 19 09:40:04 2019 +1300 Some minor cleaning up. commit 33f3be81c8caf79b9be2e9d02dad6205a18ab8ba Author: Alan Garny Date: Tue Nov 19 09:26:58 2019 +1300 Some minor cleaning up. commit e60dc46ff5613fbda5ce5d0b85a70f51de60d8bc Author: Alan Garny Date: Mon Nov 18 15:25:14 2019 +1300 Some minor cleaning up. commit 741cdf3997f01111786a354a722cb56844984870 Author: Alan Garny Date: Mon Nov 18 15:07:00 2019 +1300 Some minor cleaning up. commit 0ef8fc0fb108f58e06be1d3ed6faed5a6bafa9c3 Author: Alan Garny Date: Mon Nov 18 14:47:51 2019 +1300 Some minor cleaning up. commit 5ef67f08d219d31553eb78d26f6678e23103eff6 Author: Alan Garny Date: Mon Nov 18 14:04:47 2019 +1300 Some minor cleaning up. commit 7c6ff6986ab6fc43bf75c6c9616c561a6677e672 Author: Alan Garny Date: Mon Nov 18 10:52:11 2019 +1300 Some minor cleaning up. commit cd01836b49560888c93c34e62031ece2ac4debd3 Author: Alan Garny Date: Fri Nov 15 18:51:39 2019 +1300 Check. commit 58d4d4beab55686f6e8bba8b193627ceffa4d41e Author: Alan Garny Date: Fri Nov 15 16:30:37 2019 +1300 Some minor cleaning up. commit 8aacb311dfce137145fce6cb5862d381715b0476 Author: Alan Garny Date: Fri Nov 15 16:13:46 2019 +1300 Some minor cleaning up. commit 303e83fe92eab90a65d01252d2d359634f34afe6 Author: Alan Garny Date: Fri Nov 15 16:07:57 2019 +1300 Some minor cleaning up. commit 66eeb036d8a550fdfdb67757413d88e30bfcf191 Author: Alan Garny Date: Fri Nov 15 16:01:03 2019 +1300 Some minor cleaning up. commit f51a69537a83ac4ac52175e2fd33b0b64a28c8c9 Merge: 85727a6e7 76fbc4c37 Author: Alan Garny Date: Fri Nov 15 12:44:43 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 76fbc4c37a9727ecdd8f41538e94c4c23d22739d Merge: 73101f48d 890a115ed Author: Alan Garny Date: Fri Nov 15 12:42:40 2019 +1300 Some minor cleaning up. commit 890a115edf77dd179ce82e6d02adf61299c3ab28 Author: Alan Garny Date: Fri Nov 15 12:15:41 2019 +1300 Some minor cleaning up. commit 85727a6e7f9fa714560fde8966b21bbd1a9528bd Author: Alan Garny Date: Fri Nov 15 11:57:55 2019 +1300 Some minor cleaning up. mSimulationResults in SimulationData is not used anywhere...!? commit 309009d5b5e3c0acc251ad13e4e52512100dfe5e Merge: edbd8731e 73101f48d Author: Alan Garny Date: Fri Nov 15 11:37:26 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 73101f48db26ad48a7a74f81a25acea6fb3e72cc Merge: 6be4bce7b bfb67dbcc Author: Alan Garny Date: Fri Nov 15 11:35:33 2019 +1300 Some minor cleaning up. commit bfb67dbcc4ea2eb624692825b8eeae39bc19c097 Author: Alan Garny Date: Fri Nov 15 11:01:25 2019 +1300 Some minor cleaning up. commit 3e7d14f0d47ba958b41f641cfd18f8bb423b53ee Author: Alan Garny Date: Fri Nov 15 11:01:21 2019 +1300 Some minor cleaning up. commit d1981409c0edbd819121c986ccd881040345c75e Author: Alan Garny Date: Fri Nov 15 11:01:09 2019 +1300 Some minor cleaning up. commit 8a08b0f0bed875c2d184314664441aea62f2232d Author: Alan Garny Date: Fri Nov 15 10:27:22 2019 +1300 Optimised our use of Q_OS_XXX. We "only" support Windows, Linux and macOS. So, if we, for example, check for Windows and Linux, then the only one left must be macOS, in which case there is no need to test for it. commit 6be4bce7bfb610061d08507fca9c0d2aff03c8ba Merge: 1a01626b1 652e833fb Author: Alan Garny Date: Thu Nov 14 19:19:17 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR (closes #2211). commit edbd8731e9fc14e57bded650c8c43b5ae339d20d Author: Alan Garny Date: Thu Nov 14 19:13:06 2019 +1300 Some minor cleaning up. commit b0db4d92e7a0da12573c015751ec25b7b3e2df4a Author: Alan Garny Date: Thu Nov 14 19:05:05 2019 +1300 Some minor cleaning up. commit 652e833fba18eed37e31239d703334343eba7630 Author: Alan Garny Date: Thu Nov 14 17:28:37 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR (#2211). commit 1fffe3f8c7273952395992fae46afc8ec4ba8ebd Author: Alan Garny Date: Wed Nov 13 17:57:56 2019 +1300 Some minor cleaning up. commit 177fd3b3b8b8fb9e96e74e52ad269cab86882d7a Author: Alan Garny Date: Wed Nov 13 17:55:13 2019 +1300 Some minor cleaning up. commit bcf00672f23717edd1ab4cce4b6057cce51f3bd8 Author: Alan Garny Date: Wed Nov 13 17:42:08 2019 +1300 Some minor cleaning up. commit ead196055e4d835c369d5f19bffb1cd365b91cf3 Author: Alan Garny Date: Wed Nov 13 17:41:22 2019 +1300 Some minor cleaning up. commit 727b3943e94ae45cf49ff6d07563e7284c697063 Author: Alan Garny Date: Wed Nov 13 17:07:51 2019 +1300 Some minor cleaning up. commit 439b155af1a7e3c2e6c9d3a67101f12253ddcdec Author: Alan Garny Date: Wed Nov 13 15:29:44 2019 +1300 Simulation Experiment view: some clarification. commit 6cd51cdfeeac96e2c16f0047df214c40b143d7ad Author: Alan Garny Date: Wed Nov 13 15:29:23 2019 +1300 Some minor cleaning up. commit 61737f228a74056bcc88f11d2cbd7a201db79f74 Author: Alan Garny Date: Wed Nov 13 15:12:11 2019 +1300 SimulationExperiment view: updated our translations. commit 9b72057d7660f88159e442780d2dfb03cf4a9f3c Author: Alan Garny Date: Wed Nov 13 14:52:44 2019 +1300 Some minor cleaning up. commit 23a6258b7f21467a4131218960278805f0e0f074 Author: Alan Garny Date: Wed Nov 13 14:21:55 2019 +1300 Some minor cleaning up. commit fbb323a18c8b02081b4ff5618510debca75253c8 Author: Alan Garny Date: Wed Nov 13 13:55:57 2019 +1300 Some minor cleaning up. commit d770b80ecee6af848e54936df0240134d534d444 Author: Alan Garny Date: Wed Nov 13 13:09:44 2019 +1300 Python: disable our Jupyer-related scripts in debug mode under Windows. commit 2b428f5bd0a727f2456a7d905b46e81b928c00bf Author: Alan Garny Date: Wed Nov 13 13:09:22 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit cf92cca986bc01361f0239cb67d37c84f1a2265c Author: Alan Garny Date: Fri Nov 8 14:46:42 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 8a3246820c2cb02b64019b69bd0cd7842969f09a Author: Alan Garny Date: Fri Nov 8 14:45:08 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit a5f33b56a107c11ddde3aeb9a1d0a241f2c4c303 Author: Alan Garny Date: Fri Nov 8 14:39:06 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 46f003dcee4ce14394f5dd41102755a585f3d3e3 Author: Alan Garny Date: Fri Nov 8 12:47:09 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 3687c17fb67ca972fdd9c6c9db1a442f57378c3b Author: Alan Garny Date: Mon Nov 4 15:28:34 2019 +0900 PythonPackages: binaries for version 3.7.5. commit 3adfa5b17e766e9d56c812ae341dc3360bf991fa Author: Alan Garny Date: Mon Nov 4 15:17:59 2019 +0900 Python: binaries for version 3.7.5. commit b9b69f54a5cf34fb83523fd44ea704f8479a24c6 Author: Alan Garny Date: Mon Nov 4 14:46:40 2019 +0900 Python: binaries for version 3.7.5. commit 89817670500088ab92b06dd795a694ac906e3e28 Author: Alan Garny Date: Mon Nov 4 14:17:58 2019 +0900 Python: update to version 3.7.5 (#1255). commit 934708e087102d89591f686b67bf275ee24d690c Author: Alan Garny Date: Mon Nov 4 12:43:37 2019 +0900 Python: track the proper version of Python! commit a2f69c91d32501a7dd91d8b917999896dec2ec1b Author: Alan Garny Date: Mon Nov 4 12:21:13 2019 +0900 Python: binaries for version 3.7.5. commit 61af6bcdc75f4ccda0d2ee5dfc1e8fe910ff0496 Merge: 0b851e28b eba254c1f Author: Alan Garny Date: Mon Nov 4 12:04:57 2019 +0900 Python: update to version 3.7.5. commit eba254c1f3056b8f739c70bbdc2406a90dbef045 Author: David Brooks Date: Mon Nov 4 15:47:28 2019 +1300 Python: update to version 3.7.5 (#1255). commit 0b851e28b0947efab89f68be4d07eb59042ed1ed Merge: ccfddeb2b 1a01626b1 Author: Alan Garny Date: Mon Nov 4 09:45:13 2019 +0900 Merge branch '\''master'\'' into issue1255. commit 1a01626b1a4438a4ee63dbfe40ad0518d3619d9c Merge: 3bb61195f 721cee407 Author: Alan Garny Date: Mon Nov 4 09:44:25 2019 +0900 QScintilla: upgraded to version 2.11.3 (closes #2208). commit 721cee4072cf12859fc150feb05e8e89c6b1f026 Author: Alan Garny Date: Mon Nov 4 09:18:16 2019 +0900 Slight update to our downloads page (#2208). commit 6faeda4309117e631b720e48250c5dd9d6e74472 Author: Alan Garny Date: Mon Nov 4 09:18:00 2019 +0900 QScintilla: binaries for version 2.11.3 (#2208). commit 94341e39d990f573a0045879fe00f91502f926fd Author: Alan Garny Date: Mon Nov 4 09:06:26 2019 +0900 QScintilla: upgraded to version 2.11.3 (#2208). commit ccfddeb2ba607b7645ae239fba9820931e98aa88 Author: Alan Garny Date: Sun Nov 3 11:41:08 2019 +0900 Some minor cleaning up. commit d4213fb7f3436dd8d194a355dc626b4ca65d9666 Author: Alan Garny Date: Sun Nov 3 11:36:58 2019 +0900 Some minmor cleaning up. commit 4d5b2f0f02deba426a8cce94404954024fbd34c2 Author: Alan Garny Date: Sun Nov 3 11:34:31 2019 +0900 Revert "Some minor cleaning up." This reverts commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7. commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7 Author: Alan Garny Date: Sun Nov 3 11:30:28 2019 +0900 Some minor cleaning up. commit 866a2f5297e287838c3d5bb6b0d2049956114c56 Author: Alan Garny Date: Sun Nov 3 10:55:44 2019 +0900 Some minor cleaning up. commit 02879e98d5a756f35bc804c7b0aa96cd596a531e Author: Alan Garny Date: Sun Nov 3 10:53:02 2019 +0900 Some minor cleaning up. commit ef63de284fcce11b4ffe3b19b6b61ecafecf4588 Merge: 104584f0e 3bb61195f Author: Alan Garny Date: Sun Nov 3 10:44:54 2019 +0900 Merge branch '\''master'\'' into issue1255. commit 3bb61195fa3d40c6dec38b3d201acbadaffdb232 Merge: 2be730ae2 5cf3abd29 Author: Alan Garny Date: Sun Nov 3 10:44:11 2019 +0900 Some minor cleaning up. commit 5cf3abd293298a54956cbe1193c7dc141b3345a5 Author: Alan Garny Date: Sun Nov 3 10:18:52 2019 +0900 Some minor cleaning up. commit 104584f0e2f542dd6caaf6bd3dff275bcf3ea8eb Author: Alan Garny Date: Sun Nov 3 09:33:13 2019 +0900 Python: make sure that our Python home directory exists. commit 4fbf21a924915ab561b933332905e511e52e4e20 Author: Alan Garny Date: Sun Nov 3 09:28:17 2019 +0900 Python: make sure that our Python home directory exists. Indeed, it'\''s causing us problems on Windows since [OpenCOR]/python existed...! commit 6c7e4bcbd60272a8218190a9fc42edb4f1c8d82b Author: Alan Garny Date: Sun Nov 3 09:27:33 2019 +0900 Python: make sure that our Python home directory exists. commit c726d92547f77c17e8ddf39e839e24db357c6f25 Author: Alan Garny Date: Sat Nov 2 23:26:17 2019 +0900 Some minor cleaning up. commit fcb75e14bac595274c3b56cd486915c0c45ee324 Author: Alan Garny Date: Sat Nov 2 21:40:55 2019 +0900 Some minor cleaning up. commit bce956fed6f3845c4bf76e665fae2c742efaaa55 Author: Alan Garny Date: Sat Nov 2 21:35:59 2019 +0900 Some minor cleaning up. commit 95c1cffe44bf69237e49c07f15dc33be2eedc178 Author: Alan Garny Date: Sat Nov 2 17:01:56 2019 +0900 Some minor cleaning up. commit f427489eb66dd45c6c3e7545f917e13a14e5efde Author: Alan Garny Date: Sat Nov 2 16:47:01 2019 +0900 Some minor cleaning up. commit 01b20dbf844d2a52c1e69eae9357286bdf47cc6d Author: Alan Garny Date: Sat Nov 2 15:24:17 2019 +0900 Some minor cleaning up. commit 9ed9adf8b1dd887f86a5cb45884d0ba71eb9e72f Author: Alan Garny Date: Sat Nov 2 12:42:45 2019 +0900 Some minor cleaning up. commit 586cb3860defa36308f2ae1616179eb4bfd8e19e Author: Alan Garny Date: Sat Nov 2 12:02:29 2019 +0900 Some minor cleaning up. commit 669ff1b4b9e128e04bb913aef471130e2d252f0c Author: Alan Garny Date: Sat Nov 2 08:04:12 2019 +0900 Some minor cleaning up. commit afa06adce3280b4b68d9176cd23c396fe7a4decb Author: Alan Garny Date: Sat Nov 2 07:55:22 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 7d1eb56d79090a3002ea073cc660fd4fe46ee357 Author: Alan Garny Date: Sat Nov 2 07:53:40 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 5809a68b9133906edea760ea5e6c68421343b945 Author: Alan Garny Date: Sat Nov 2 07:48:11 2019 +0900 Some minor cleaning up. commit 3436e0ef1e343f890c92b274f96b75f70ae2427d Author: Alan Garny Date: Fri Nov 1 23:56:02 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 590a1fd93f2d78bb5932466a13391d5e1dee9e14 Author: Alan Garny Date: Fri Nov 1 23:47:28 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit c1f6deecd6e9959bc07600e11beeb239c93139ad Author: Alan Garny Date: Fri Nov 1 23:45:47 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit df48d3e6076f23d553ff886d92f4042fd7680d7a Author: Alan Garny Date: Fri Nov 1 18:10:18 2019 +0900 Some minor cleaning up. commit c9d89622bf33b7906a9817e6e44fcda7a1dc0e22 Author: Alan Garny Date: Fri Nov 1 17:32:24 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 476ef936c8cd115faa2962e824add62d3d210c3b Author: Alan Garny Date: Fri Nov 1 16:23:30 2019 +0900 Some minor cleaning up. commit 9f6fc04bb9c136a24f6a72f570bdbc7f56a5bed7 Author: Alan Garny Date: Fri Nov 1 16:15:53 2019 +0900 Some minor cleaning up. commit 06941a50e7af02858c68375b738faec9a7bbc21f Author: Alan Garny Date: Fri Nov 1 16:10:55 2019 +0900 Some minor cleaning up. commit 7b9ed093ecc5208d54111de40be9db5874739599 Author: Alan Garny Date: Fri Nov 1 16:09:10 2019 +0900 Python: renamed our `runpython` script to `pythonshell`. commit 37bbfefaa71b462303f5717d34da847d90b752b0 Author: Alan Garny Date: Fri Nov 1 16:05:45 2019 +0900 Python: renamed our `runpython` script to `pythonshell`. commit 2d2e21fd4050bcb0d8d1c0527dcf861ba40b37fb Author: Alan Garny Date: Fri Nov 1 14:00:58 2019 +0900 Python: make sure that our scripts support spaces in the OpenCOR path. commit c3f7ff9bf5d03436bf60a72703fd8c84a2fe40ee Author: Alan Garny Date: Fri Nov 1 13:56:20 2019 +0900 Python: merged `setpythonpath` into `runjupyter` since, now, it'\''s only used there. commit 417a7b888bd6fcbd216e8b50b7a0a6faeb3a9ad1 Author: Alan Garny Date: Fri Nov 1 12:27:39 2019 +0900 Python package: new binaries for version 4.7.4 (#1255). commit 8bc603fe70629249d8eedef134e84c764da05c92 Merge: e7597e8ad d3b802067 Author: Alan Garny Date: Fri Nov 1 12:15:32 2019 +0900 Run the set_python_path.py script when starting OpenCOR (closes #2205). commit d3b8020676cb61bd37b2f88761b516353d06f5c0 Author: David Brooks Date: Fri Nov 1 14:41:08 2019 +1300 Python: run the `set_python_path` script at initialisation time and no longer during installation or when running the Python shell (#2205). commit 1a9301f4dfe04755ab3c30980af45882a077966c Author: David Brooks Date: Fri Nov 1 11:24:16 2019 +1300 Python: tidy code (#2205) commit e7597e8ad25d768f3cf9af586981177b7f7d7cb9 Author: Alan Garny Date: Fri Nov 1 09:31:02 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 58ef84ef1588c4abc8dd2deaba075adba6b917f7 Author: Alan Garny Date: Fri Nov 1 09:29:24 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 3eb2a5d9c3925ddeac0d8d9fe723b5c6f6596283 Author: Alan Garny Date: Fri Nov 1 09:13:49 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 8808a8e9e42831c951082b6e5055925302a8af05 Author: Alan Garny Date: Wed Oct 30 20:44:10 2019 +0900 Python: remove the SolverSupport plugin, which is not used anywhere. commit 5bba18ca8b1bad724ac8d98f88c1f8b84ac37da0 Author: Alan Garny Date: Wed Oct 30 17:55:49 2019 +0900 Some minor cleaning up. commit 3932af3fab4846176ce86f83f2196afe0737b564 Author: Alan Garny Date: Wed Oct 30 17:44:56 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit ba8d83e7fd386ae96af29ea37e2e0e84b37d3543 Author: Alan Garny Date: Wed Oct 30 17:37:11 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit 700f5daeca26b3811fb12a3be27ae3a689da6a47 Author: Alan Garny Date: Wed Oct 30 16:57:33 2019 +0900 Python: cleaned up the code for the PythonQtSupport plugin. commit fc5f70dfb9181f9ebd1aa1990e2c3a20c0466266 Author: Alan Garny Date: Wed Oct 30 16:46:24 2019 +0900 Some minor cleaning up. commit b6a77b79b6e4363a9b3fc97432c3557f0b829aa0 Author: Alan Garny Date: Wed Oct 30 16:29:14 2019 +0900 Some minor cleaning up. commit ae4767057a9d25830db39e3758f25d8f87726aaa Author: Alan Garny Date: Wed Oct 30 15:39:55 2019 +0900 Some minor cleaning up. commit 8cacd17f14c5bb9d39f30db36260b3af6bb1b786 Author: Alan Garny Date: Wed Oct 30 14:36:00 2019 +0900 Some minor cleaning up. commit 21ad718ab5bb09e27d50516732c8ecffb86cf5cc Merge: 1a89a681d 2be730ae2 Author: Alan Garny Date: Wed Oct 30 14:30:35 2019 +0900 Merge branch '\''master'\'' into issue1255. commit 2be730ae23ec2911dc8ca64cadb116ddbf9c678a Merge: 11fd66a6f 216df6d95 Author: Alan Garny Date: Wed Oct 30 14:30:06 2019 +0900 Some minor cleaning up. commit 216df6d95736d3950ea945bb5ef086bf70410c62 Author: Alan Garny Date: Wed Oct 30 14:04:29 2019 +0900 Some minor cleaning up. commit 1a89a681de3c9c0ede2d086f2c8cf57c6a9902d5 Author: Alan Garny Date: Wed Oct 30 13:48:48 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit a829f58ad595facefdf4ab8e1a5fa109f42f8c15 Author: Alan Garny Date: Wed Oct 30 13:12:40 2019 +0900 Some minor cleaning up. commit db2fcfcd5f79caa95a0bfa73934f9344e20c20bc Merge: 52e066cad 11fd66a6f Author: Alan Garny Date: Wed Oct 30 12:37:40 2019 +0900 Merge branch '\''master'\'' into issue1255. commit 11fd66a6f53d8c7d7619f8f93ecc1e3e464f5415 Merge: 647590818 dd3b2848d Author: Alan Garny Date: Wed Oct 30 12:35:55 2019 +0900 Some minor cleaning up. commit dd3b2848d09fb0c61dadcc43115e5668e326145c Author: Alan Garny Date: Wed Oct 30 12:12:29 2019 +0900 Some minor cleaning up. commit 52e066cad34b6c522c379e3a307330c4eaaad38b Author: Alan Garny Date: Wed Oct 30 12:07:12 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit 86b59af18f0fc55b1d945d1a958da2a9b01fb70b Author: Alan Garny Date: Wed Oct 30 11:25:37 2019 +0900 Python: cleaned up the code for the PythonShell plugin. commit 60dc1e51d9f50c301a6adbb8bc6b109d31b83758 Author: Alan Garny Date: Wed Oct 30 11:21:17 2019 +0900 Python: some minor cleaning up. commit b7ed4c58578030810a54e6355654f4e5a923b98b Author: Alan Garny Date: Wed Oct 30 11:20:49 2019 +0900 Python: some minor cleaning up. commit 00f7becffc3ae002c58932f563ef6dbbd5f56fb9 Author: Alan Garny Date: Wed Oct 30 10:20:28 2019 +0900 Python: cleaned up the code for the Python Console window. commit b75f7cfe1f1c4c4a768fe444e7a125cf0eaac95d Author: Alan Garny Date: Wed Oct 30 10:06:16 2019 +0900 Python: cleaned up the code for the Python Console window. commit 32d6ccd31a6b37eb3b27f29e3b22dc2bc38095bc Author: Alan Garny Date: Wed Oct 30 09:34:48 2019 +0900 Some minor cleaning up. commit bc80eb92bffe50db50c9e242c3a873222b4ba99b Merge: e734433c5 647590818 Author: Alan Garny Date: Tue Oct 29 23:19:30 2019 +0900 Merge branch '\''master'\'' into issue1255. commit 647590818266a85e9521a4776620bae76684ba95 Merge: cb1248213 d62d645ea Author: Alan Garny Date: Tue Oct 29 23:15:35 2019 +0900 Make Clang-Tidy happy. commit d62d645ea67db5399e34786b4dc95a3c48c54206 Author: Alan Garny Date: Tue Oct 29 22:01:48 2019 +0900 Make Clang-Tidy happy. commit e734433c5af1ae4e0547b3e0408ef49a4b906cf3 Merge: b0609b4c2 cb1248213 Author: Alan Garny Date: Fri Oct 25 21:52:34 2019 +1300 Merge branch '\''master'\'' into issue1255. commit cb124821308c3b56a908fa8eaf2d70f6a9616578 Merge: 7875883d6 5f146607a Author: Alan Garny Date: Fri Oct 25 21:45:30 2019 +1300 Cleaning up. commit b0609b4c2653ed9674ad48f701b6adfcbf4b0c7d Author: Alan Garny Date: Fri Oct 25 19:58:59 2019 +1300 Some minor cleaning up. commit 5f146607a571b0fa07204dfcf3302958d3ee1143 Author: Alan Garny Date: Fri Oct 25 19:52:09 2019 +1300 Make Clang-Tidy happy. commit 5f5a60f6a7efe4adff82ed5b7532b7e85f086bf0 Author: Alan Garny Date: Fri Oct 25 19:49:03 2019 +1300 Make Clang-Tidy happy. commit b6ea05d79478e21c32b9dbcfab00fd1d9b00135c Author: Alan Garny Date: Fri Oct 25 19:39:00 2019 +1300 Make Clang-Tidy happy. commit 8d410e77b0c329996e9ee12d6dd15710de44b3bb Merge: 4ce1ec636 6f501f554 Author: Alan Garny Date: Fri Oct 25 19:25:44 2019 +1300 Fix bad cleaning... commit 4ce1ec636178b2f4ef9b075bbdde8caababe45dc Merge: c82cb4096 91d4ffbc1 Author: Alan Garny Date: Fri Oct 25 19:24:40 2019 +1300 Give our Python modules a filename otherwise IPython tracebacks are noisy. commit 6f501f554ca3a1cf5b540f13a470ab607d4cf28c Author: David Brooks Date: Fri Oct 25 15:21:10 2019 +1300 Python: fix bad cleaning... commit 67469cc42c2f7e5b852c83f720d6f51640e60c24 Author: Alan Garny Date: Fri Oct 25 15:15:04 2019 +1300 Make Clang-Tidy happy. commit 6595a1bcb962fa4f16fdf653d6a93d023952b7b4 Author: Alan Garny Date: Fri Oct 25 15:11:49 2019 +1300 Make Clang-Tidy happy. commit 5b192f4c36df5bca5a7d5ff6ce234c1878b7f64b Author: Alan Garny Date: Fri Oct 25 15:08:25 2019 +1300 Make Clang-Tidy happy. commit 91d4ffbc1b44c4fa2cc5c1a45d6b9c6117c26c29 Author: David Brooks Date: Fri Oct 25 15:07:13 2019 +1300 Python: give our modules a filename otherwise IPython tracebacks are noisy. commit 4bcd640cc101ac8bcda8c39a503f30f5b8c93c73 Author: Alan Garny Date: Fri Oct 25 14:59:03 2019 +1300 Make Clang-Tidy happy. commit 2277589a3674350af8de02b2b23a9405177902be Author: Alan Garny Date: Fri Oct 25 12:59:47 2019 +1300 Make Clang-Tidy happy. commit c82cb40963d11d8e09cba269931df1e236cc60ba Author: Alan Garny Date: Fri Oct 25 12:42:20 2019 +1300 Make Clang-Tidy happy. commit 4025159ca631fcf61f45c3678227dc63e91d8589 Author: Alan Garny Date: Fri Oct 25 08:38:01 2019 +1300 Python: make sure that our test Zinc window loads before our Python Console window. commit c19ca691e87e61263047ca53c719051fdc7e4884 Author: Alan Garny Date: Thu Oct 24 20:02:06 2019 +1300 Some minor cleaning up. commit e95c38fb6d011529e8d77b567faf3efef93d4f3b Author: Alan Garny Date: Thu Oct 24 19:56:15 2019 +1300 Some minor cleaning up. commit 665da917f96906d880747a3a49c63a079252e785 Author: Alan Garny Date: Thu Oct 24 19:44:20 2019 +1300 Some minor cleaning up. commit afb62d754463f2326978f8c2c8a3d8af837e49cf Author: Alan Garny Date: Thu Oct 24 19:29:35 2019 +1300 Clang-Tidy: some new checks (that we don'\''t want). commit 83828dd179b81384f962ee3296f7ee84e68cf569 Author: Alan Garny Date: Thu Oct 24 19:11:46 2019 +1300 Some minor cleaning up. commit f9d8466a05bc1a27bc72a44e8312f685d5232e61 Author: Alan Garny Date: Thu Oct 24 18:12:33 2019 +1300 Core::openRemoteFile(): don'\''t rely on our file manager to create a local copy of our remote file. Indeed, to call FileManager::create() works, but then to get the file name we need to handle the fileCreated signal, which we can'\''t using Core::openRemoteFile(). So, instead, we "manually" create a local copy of the remote file. commit d00fb04257e30853c99c6ef901f38b00606c6633 Author: Alan Garny Date: Thu Oct 24 17:47:38 2019 +1300 Some minor cleaning up. Fogot to remove that line! commit 657980612ac10d0b0aeb54723ded0bf5670ddd5b Author: Alan Garny Date: Thu Oct 24 17:45:28 2019 +1300 Some minor cleaning up. commit 0e9a5016aa37a4099ae15b77be648b152e97c59d Author: Alan Garny Date: Thu Oct 24 16:46:55 2019 +1300 Python: our `runpython` script now needs to start the `PythonShell` plugin. See https://github.com/opencor/opencor/issues/1255#issuecomment-545729293. commit 9794e18256b9414eb5c5231cfe85f25bf390c1ec Author: Alan Garny Date: Thu Oct 24 16:42:39 2019 +1300 Revert "Some minor cleaning up." Python doesn'\''t like the spaces around `connection_file`! See https://github.com/opencor/opencor/issues/1255#issuecomment-545728808. commit 6f140c7fd9b6479bbd72fc46661776fe23d765c3 Author: Alan Garny Date: Thu Oct 24 16:39:32 2019 +1300 PythonPackages: updated our binaries. This is following PR agarny/opencor/#7. commit 0da9f975c83b6db9ed3c4ff8c2aba815ff186c46 Merge: 0e4e51147 6a009f154 Author: Alan Garny Date: Thu Oct 24 16:06:52 2019 +1300 Fix for scrambled matplotlib display. commit 0e4e511470cfa407ea6f668eb08a3785007a9e71 Author: Alan Garny Date: Thu Oct 24 15:59:03 2019 +1300 Python: make sure that `./jupyterconsole` works fine. commit 06d4e61549500c77e6650c179134dac0ca295278 Author: Alan Garny Date: Thu Oct 24 15:43:25 2019 +1300 Some minor cleaning up. commit 95f6279f78454ee7162e9ea0cb5eccdcd5c92f00 Author: Alan Garny Date: Thu Oct 24 15:39:23 2019 +1300 Some minor cleaning up. commit a86786eb8f11b220fe3e60e0e58e1f499edfa888 Author: Alan Garny Date: Thu Oct 24 14:17:30 2019 +1300 Some minor cleaning up. commit 19618e613fa3902f854b6cf7003ba48710a37784 Author: Alan Garny Date: Thu Oct 24 14:12:56 2019 +1300 Some minor cleaning up. commit 930c47c2f4678f3c12c3b4afa6b105490e39ba17 Author: Alan Garny Date: Thu Oct 24 13:56:45 2019 +1300 Partly revert commit cff17fc98. Indeed, by default it would have been equivalent to elementsAttributes.values() and not elementsAttributes.keys() as we want. commit cff17fc98d75c2d519b0954dda5a27f594490214 Author: Alan Garny Date: Thu Oct 24 13:46:51 2019 +1300 Some minor cleaning up. commit 6a009f154e555820ea811d770c3ac7e24120e51b Merge: 78757eee4 ad9ca98c6 Author: David Brooks Date: Thu Oct 24 13:34:44 2019 +1300 Merge branch '\''issue1255'\'' into djb-1255 commit 78757eee4ba9e1166c99c30a9e9d6e203e9ab031 Author: David Brooks Date: Thu Oct 24 13:32:39 2019 +1300 Python: fix Matplotlib v3 output under PythonQt. commit 9d0b6956d6b67f0efeed6d7a3b8333b2c383d6eb Author: Alan Garny Date: Thu Oct 24 11:24:18 2019 +1300 Some minor cleaning up. commit a8075e98438ac0b27c575d05ac850f90301ca9f5 Author: David Brooks Date: Thu Oct 24 11:04:33 2019 +1300 Python: fix typo in PythonQt changes for Matplotlib. commit ad9ca98c6979dbe02b2fae16d177fc7693477716 Author: Alan Garny Date: Wed Oct 23 18:26:16 2019 +1300 Some minor cleaning up. commit 328d313986cbcfa164c2831891d9fe4d5b39f4a9 Author: Alan Garny Date: Wed Oct 23 18:19:39 2019 +1300 Some minor cleaning up. commit 2c216b1d61a2cd1e3dc5e57280d3338830a59a41 Author: Alan Garny Date: Wed Oct 23 18:13:09 2019 +1300 Some minor cleaning up. commit 3071e118fef905913425dc9de3b38b465e881c21 Author: Alan Garny Date: Wed Oct 23 18:12:14 2019 +1300 Some minor cleaning up. commit 136fa624771dcb8b2f5810630dc8cbab0b4efa33 Author: Alan Garny Date: Wed Oct 23 18:07:43 2019 +1300 Some minor cleaning up. commit b9c965d5c60342bab0c73c6c8a3271a40140d3df Author: Alan Garny Date: Wed Oct 23 15:31:52 2019 +1300 Some minor cleaning up. Matching what we have in CentralWidget::openRemoteFile(). commit b22d59c335e9968bcbcbeb92f5bfb8b7c7115453 Merge: 7a9aec54f 7875883d6 Author: Alan Garny Date: Wed Oct 23 12:55:48 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 7875883d6cc33c83135dbcb8034e6559397a4284 Merge: db8c07f34 3c27c9a7b Author: Alan Garny Date: Wed Oct 23 12:53:25 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (closes #2198). commit 3c27c9a7b7c55ed15a403369848afc2e840dc2ac Author: Alan Garny Date: Wed Oct 23 12:30:25 2019 +1300 Slight update to our downloads page (#2198). commit c5c9975e999c0faa523473e5c5bdc408010a02ce Merge: 1884f5e3e db8c07f34 Author: Alan Garny Date: Wed Oct 23 12:28:47 2019 +1300 Merge branch '\''master'\'' into issue2198. commit 1884f5e3e97747f05973bec3547fbee3e71b7205 Author: Alan Garny Date: Wed Oct 23 12:27:56 2019 +1300 SUNDIALS: binaries for version 5.0.0 (#2198). commit db8c07f34bb808cd91809cb19be23eba38acacef Merge: 4e60f99bd da1a01211 Author: Alan Garny Date: Wed Oct 23 12:24:53 2019 +1300 Mesa: upgraded to version 19.2.1 (closes #2197). commit f511f90fd24df90e04a1006b790da80ec6657f84 Author: Alan Garny Date: Wed Oct 23 12:19:28 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (#2198). commit c5d793f65568ad5297543f3e9ef32695ddfc1d54 Author: Alan Garny Date: Wed Oct 23 12:13:41 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (#2198). commit da1a0121193c4247360ac179eb317ba2cca598c3 Author: Alan Garny Date: Wed Oct 23 12:03:14 2019 +1300 Slight update to our downloads page (#2197). commit 5f0a86132438b6ebbfa3c91361d40d9eebee56fc Author: Alan Garny Date: Wed Oct 23 11:59:16 2019 +1300 Mesa package: binary for version 19.2.1 (#2197). commit b209f154cf96657b3d6e9d233e41249cfbc50f2a Author: Alan Garny Date: Wed Oct 23 11:43:56 2019 +1300 Mesa: upgraded to version 19.2.1 (#2197). commit 7a9aec54f27b9ac2082ff6132608872a6d3bc215 Author: Alan Garny Date: Wed Oct 23 11:14:18 2019 +1300 Some minor cleaning up. commit 64e936eff9edcb73f1e914399ae4f2a60ac11362 Author: Alan Garny Date: Wed Oct 23 11:12:22 2019 +1300 Python: no need for a call to `SetDllDirectoryW()` anymore. commit e1fdbfd113c3b0b3a0910d56811fbe8b63e3222b Author: Alan Garny Date: Wed Oct 23 11:08:41 2019 +1300 Some minor cleaning up. commit 5c72467701096994ce9d1ccc6941d7af39496b0c Author: Alan Garny Date: Tue Oct 22 17:20:45 2019 +1300 Some minor cleaning up. commit 0e56367adac220ccc05094df283bdf531e9cd638 Merge: af8ee0d7d 4e60f99bd Author: Alan Garny Date: Tue Oct 22 17:06:23 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 4e60f99bd6b03b880de843d1522ab38dce4a7963 Author: Alan Garny Date: Tue Oct 22 17:05:41 2019 +1300 Some minor cleaning up. commit af8ee0d7d822249670a357b00ff995c715bd8809 Author: Alan Garny Date: Tue Oct 22 16:59:56 2019 +1300 Some minor cleaning up. commit a483e516cdd8e64b7dc5abda58fa1fa0234c5ac9 Merge: 9b99e6443 7d36fb04f Author: Alan Garny Date: Tue Oct 22 16:44:23 2019 +1300 Merge branch '\''issue1255'\'' of https://github.com/agarny/opencor into issue1255 commit 9b99e64433a37ce10190ebaac0015af5700eb1d7 Merge: 7914033e9 f1f1b0c19 Author: Alan Garny Date: Tue Oct 22 16:43:52 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 7914033e925934c77621c1205ce14406e0cec5c6 Author: Alan Garny Date: Tue Oct 22 16:41:31 2019 +1300 Some minor cleaning up. commit f1f1b0c192454206fdbc7da9c07820944b210031 Author: Alan Garny Date: Tue Oct 22 16:37:51 2019 +1300 Some minor cleaning up. commit 4de15ba7afd744793dd04d768fc853da91d0e73d Author: Alan Garny Date: Tue Oct 22 16:16:43 2019 +1300 Some minor cleaning up. commit c80733c7516d9ca26d9c9c52a7b992a7244b41fc Author: Alan Garny Date: Tue Oct 22 16:16:40 2019 +1300 Some minor cleaning up. commit 9f98faa7678b0f04dc1dc40c2fe3e77f33f73427 Author: Alan Garny Date: Tue Oct 22 16:16:30 2019 +1300 Some minor cleaning up. commit db55bf84fccc1d554a1a529cf873ae732d8c0789 Author: Alan Garny Date: Tue Oct 22 16:16:27 2019 +1300 Some minor cleaning up. commit 7d36fb04fc9e3e3b531739d597e8348987139c92 Merge: 52f4117fe f6f575400 Author: Alan Garny Date: Tue Oct 22 15:20:29 2019 +1300 Merge branch '\''issue1255'\'' of https://github.com/agarny/opencor into issue1255 commit 52f4117fe901063de080a27e242cc2c8ab724661 Merge: 6e85cb0cf f5e794870 Author: Alan Garny Date: Tue Oct 22 15:20:03 2019 +1300 Merge branch '\''master'\'' into issue1255. commit 6e85cb0cf1eee613d5b3cc788c7e7a2d5f3a7e36 Author: Alan Garny Date: Tue Oct 22 15:17:57 2019 +1300 Some minor cleaning up. commit f5e794870b4095da068b582da245dd3707264159 Author: Alan Garny Date: Tue Oct 22 15:10:47 2019 +1300 Some minor cleaning up. commit f6f57540058579b0b626230d6fc35c41b7367db5 Author: Alan Garny Date: Tue Oct 22 14:48:15 2019 +1300 Some minor cleaning up. commit 5fc6c3cefcf13249c62bb5e73e2923023b2ef7b9 Merge: f53b0b0a0 9985e5f4e Author: Alan Garny Date: Tue Oct 22 14:10:07 2019 +1300 Merge branch '\''master'\'' into issue1255. commit f53b0b0a03ed1d0d3a0e4aa98884857ef49b80fe Author: Alan Garny Date: Tue Oct 22 14:09:27 2019 +1300 Some minor cleaning up. commit 9985e5f4e8c5fc975e252101e7091b9f2eaddb03 Author: Alan Garny Date: Tue Oct 22 14:08:34 2019 +1300 Some minor cleaning up. commit 6f930be87427a2671a8d0198982c9c3b534f5800 Author: Alan Garny Date: Tue Oct 22 14:08:07 2019 +1300 Some minor cleaning up. commit afe339abaa4d0a17dfe1938adbeee86d71c4cebe Author: Alan Garny Date: Tue Oct 22 13:34:45 2019 +1300 Python package: new binaries for version 3.7.4. commit f3bf2f4bc4832bfb49f7e9062d03a22f247a1e1d Merge: 2ceaf736f c1f3df0c9 Author: Alan Garny Date: Tue Oct 22 13:17:05 2019 +1300 Merge branch '\''master'\'' into issue1255. commit c1f3df0c91d8ca0d8509289b0807d72356d24839 Merge: f68b136cc 3d34c95b6 Author: Alan Garny Date: Tue Oct 22 13:11:53 2019 +1300 Some minor cleaning up. commit 2ceaf736f9a81ecf575e006ab9b07957502e5a66 Author: Alan Garny Date: Tue Oct 22 13:10:34 2019 +1300 Some minor cleaning up. commit 3d34c95b60350ff76eafe759e715f24fec7d018c Author: Alan Garny Date: Tue Oct 22 12:31:47 2019 +1300 Some minor cleaning up. commit 4bddf4a5a7198383d14b8e6f635db9b3bb42b97e Author: Alan Garny Date: Tue Oct 22 10:55:48 2019 +1300 Some minor cleaning up. commit 6761c07fc4943766d11be9e370dbb34032d31b5e Author: Alan Garny Date: Tue Oct 22 10:45:10 2019 +1300 Some minor cleaning up. commit 4c79a4e81e5e09b18951c6cd7e02def57df65943 Author: Alan Garny Date: Tue Oct 22 10:26:51 2019 +1300 Some minor cleaning up. commit fe193545a1f72ef47ce619495d2251c6327a4254 Author: Alan Garny Date: Mon Oct 21 19:10:13 2019 +1300 Some minor cleaning up. commit a84a9aada5ebae621dbc28e723746a5eda4cf19e Author: Alan Garny Date: Mon Oct 21 17:32:52 2019 +1300 Some minor cleaning up. commit 09fc0d6d00f52a742ab69efcb898a38f542a2716 Author: Alan Garny Date: Mon Oct 21 16:21:13 2019 +1300 Some minor cleaning up. commit 127aed2987211a52d582d3d300844b38350ec6ff Author: Alan Garny Date: Mon Oct 21 16:08:07 2019 +1300 Some minor cleaning up. commit 25ecc1fe8eb1ac4e59a606e14eba44104bb9d793 Author: Alan Garny Date: Mon Oct 21 14:45:33 2019 +1300 Some minor cleaning up. commit 0e76cdd6422c07e91f87a1400992014335b06acb Author: Alan Garny Date: Mon Oct 21 14:42:36 2019 +1300 Some minor cleaning up. commit 53165d61725a55ab40fbdc91eb1ea531085ac579 Author: Alan Garny Date: Mon Oct 21 14:37:55 2019 +1300 Some minor cleaning up. commit 3286db2abd3071653fc6d000ee4c4f9e60ab493d Author: Alan Garny Date: Mon Oct 21 14:37:27 2019 +1300 Some minor cleaning up. commit 6d39d2bab3e9f8c153bbb87ba80bc6582715d7f0 Author: Alan Garny Date: Mon Oct 21 14:30:41 2019 +1300 Some minor cleaning up. commit 20b382571b548de62e47b8a45b7602d3a9457354 Author: Alan Garny Date: Mon Oct 21 14:13:05 2019 +1300 Some minor cleaning up. commit 917a68d5d6853fc03294d310d64d097674e86be5 Author: Alan Garny Date: Mon Oct 21 13:52:34 2019 +1300 Some minor cleaning up. commit e4ba90f46bdcf05b86e585f70a71c808cc2bf4e4 Author: Alan Garny Date: Mon Oct 21 13:41:44 2019 +1300 Some minor cleaning up. commit cce1876bf62ecb986e24031619a431800e30d7d1 Author: Alan Garny Date: Mon Oct 21 12:35:03 2019 +1300 Some minor cleaning up. commit a8ab7744598b831caa0b23649b30ba1f50294b74 Author: Alan Garny Date: Mon Oct 21 11:46:55 2019 +1300 Some minor cleaning up. commit 8d978ea30ed2be9b18ace1feda98de89029c2d5d Merge: 717536f09 1e2c2520a Author: Alan Garny Date: Mon Oct 21 11:29:45 2019 +1300 Merge branch '\''master'\'' into issue1255. commit f68b136ccacffb9ca2f63f0ce93384f30d9d0bc1 Merge: b9bbd6d7f 1e2c2520a Author: Alan Garny Date: Mon Oct 21 11:28:57 2019 +1300 Some minor cleaning up. commit 717536f09060b6a69f25b64a2aa23cca7db7761f Author: Alan Garny Date: Mon Oct 21 11:26:30 2019 +1300 Python: renamed `datastorenumpy.h` to `datastorepythonnumpy.h`. commit 1e2c2520a280317ec2fe49866272310b49e57964 Author: Alan Garny Date: Mon Oct 21 11:05:30 2019 +1300 Some minor cleaning up. commit 65f4ecab60d5fa14f650f8a00d614c7280e35be8 Author: Alan Garny Date: Mon Oct 21 10:53:15 2019 +1300 Python Console window: we don'\''t want a border. Also, we don'\''t need a top border on macOS. commit 6bc0c190279940699e6c5016c0a61a0cedc9dfab Author: Alan Garny Date: Mon Oct 21 10:45:19 2019 +1300 Some minor cleaning up. commit 50bbcb06b9d5897f5d29857f194bddc31fecac1c Author: Alan Garny Date: Mon Oct 21 10:36:26 2019 +1300 Some minor cleaning up. commit 31531a5d407b7a4c9714bf5c81f971198dc7788a Author: Alan Garny Date: Mon Oct 21 10:18:01 2019 +1300 Python: Python: our Python support should only concern our Python interface (and not also our Solver interface). commit e9b2ef9dbe9198188fb7153d6326c86804d0f477 Author: Alan Garny Date: Mon Oct 21 10:08:17 2019 +1300 Some minor cleaning up. commit a4a60a9230ce17c31c9e64a7450569513c7b2a1f Author: Alan Garny Date: Mon Oct 21 09:16:41 2019 +1300 Python: make sure that our `Web Browser` window plugin gets loaded after our `Python Console` one. commit d8e37e51c31099bda39afb855faba30fe951e2f0 Author: Alan Garny Date: Fri Oct 18 19:56:22 2019 +1300 PythonQt package: new binaries for version 3.2.2 (#1255). commit c189c42f96bd6b817267ee591e4e1aa4b3fd7449 Author: Alan Garny Date: Fri Oct 18 19:43:19 2019 +1300 Revert "Build our PythonQt package." This reverts commit f825e33860450fefaf83f8af1661db0b8e2e2257. commit 598f250b9b407aa2e9d199a23a17e697d9596637 Author: Alan Garny Date: Fri Oct 18 16:32:16 2019 +1300 PythonQt package: use the correct release and Git tag values. commit 0c5f9e6c96292155cb6099028632840e696a73ca Author: Alan Garny Date: Fri Oct 18 16:31:53 2019 +1300 Some minor cleaning up. commit f825e33860450fefaf83f8af1661db0b8e2e2257 Author: Alan Garny Date: Fri Oct 18 16:27:55 2019 +1300 Build our PythonQt package. commit a2a927cc5178d6549d0fa0aa466c3025f49dd2bd Author: Alan Garny Date: Fri Oct 18 16:27:16 2019 +1300 Some minor cleaning up. commit e2f5a0c30402c9994bdfcb8dcf75ea57f74087c2 Author: Alan Garny Date: Fri Oct 18 16:09:59 2019 +1300 PythonQt package: removed its README.rst file. This should, instead, be part of the developer documentation. commit 7471614573fd6681c789f79cdfd8b546b93c578c Author: Alan Garny Date: Fri Oct 18 16:08:47 2019 +1300 Python: renamed our PythonQtAPI plugin to PythonQt. commit 94569add63e836f06d57c0ca3902c68d0cadc62d Author: Alan Garny Date: Fri Oct 18 15:48:26 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 (#1255). commit 98cb111d5a33450961c3a6d54ad5c45baf312c10 Author: Alan Garny Date: Fri Oct 18 15:19:22 2019 +1300 Some minor cleaning up. commit de7b45f3328100a7b1272ad4634acf0b3bed4092 Author: Alan Garny Date: Fri Oct 18 14:56:23 2019 +1300 Some minor cleaning up. commit 8c395dd1d048443a857afa069b07a82c72f0ae4a Author: Alan Garny Date: Fri Oct 18 14:40:40 2019 +1300 Some minor cleaning up. commit 22db05f8df78a8c0d5bb04ac74390f7567f2f973 Author: Alan Garny Date: Fri Oct 18 12:29:31 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 (#1255). commit 921d40ea7d179427ae25f6d1c7ad1ec7493af095 Author: Alan Garny Date: Fri Oct 18 12:22:51 2019 +1300 Python package: new binaries for version 3.7.4 (#1255). commit dbad2915f9a6e187bf96ef5f418bba868566224f Author: Alan Garny Date: Fri Oct 18 11:46:03 2019 +1300 Revert "Only build our PythonPackages package." This reverts commit c9b7d62e1346b48729ced8c253494e3610a5a7b3. commit 4e14fe4aa30a32188cb05a845349a9a75f4e4ad2 Author: Alan Garny Date: Fri Oct 18 11:44:29 2019 +1300 PythonPackages package: use the correct release tag. commit c9b7d62e1346b48729ced8c253494e3610a5a7b3 Author: Alan Garny Date: Fri Oct 18 11:43:41 2019 +1300 Only build our PythonPackages package. commit e660870d9d3a413a09cb67d984f65b954bfa17fe Merge: 69ff4f0a3 b9bbd6d7f Author: Alan Garny Date: Fri Oct 18 11:31:00 2019 +1300 Merge branch '\''master'\'' into issue1255. commit b9bbd6d7fe4c4ede81fe4a708c25bbe297250a61 Merge: fc03a459f cf171f179 Author: Alan Garny Date: Fri Oct 18 11:28:52 2019 +1300 Some minor cleaning up. commit cf171f179d2aee3f73d737200d1bf7541304bd32 Author: Alan Garny Date: Fri Oct 18 11:07:23 2019 +1300 Some minor cleaning up. commit 69ff4f0a3bb81735acce51f00b9fe3181ceadcbe Author: Alan Garny Date: Fri Oct 18 11:03:26 2019 +1300 Some minor cleaning up. commit 4f4247e2b32577d5a8eb351e183472311edd2c95 Author: Alan Garny Date: Fri Oct 18 10:50:17 2019 +1300 Some minor cleaning up. commit 9638ea7acf5ae67fe322a76a5896ffe549006585 Author: Alan Garny Date: Fri Oct 18 10:23:38 2019 +1300 Python package: new binaries for version 3.7.4 (#1255). commit 8135848872afdf4b145174c4b7e0d8d5a3bc986c Author: Alan Garny Date: Fri Oct 18 10:23:19 2019 +1300 Revert "Only build the Python package." This reverts commit 3618921194209a62fb8f32144d2d0eaeffbe1c53. commit 21fa5b7221878501d49be898f1ac06ff002ff3db Author: Alan Garny Date: Fri Oct 18 10:12:59 2019 +1300 Python package: renamed the package name and use the correct release tag. commit 3618921194209a62fb8f32144d2d0eaeffbe1c53 Author: Alan Garny Date: Fri Oct 18 10:12:45 2019 +1300 Only build the Python package. commit 378de01bf8e518f50795b65f2bfe8d866864929b Author: Alan Garny Date: Fri Oct 18 09:17:52 2019 +1300 Some minor cleaning up. commit 615beb68328205fe748d6067ea99f7418bf6b5d4 Author: Alan Garny Date: Fri Oct 18 08:49:09 2019 +1300 Some minor cleaning up. commit 3a212b129834da1244cbf74063208576b77798b6 Author: Alan Garny Date: Fri Oct 18 08:45:17 2019 +1300 Some minor cleaning up. commit cb4401dd2b2f0dff38374cacecd111e92f6fa262 Author: Alan Garny Date: Thu Oct 17 18:57:28 2019 +1300 Some minor cleaning up. commit 6ab2594324213aec619afb939b8a853415c98fbb Author: Alan Garny Date: Thu Oct 17 18:55:52 2019 +1300 Some minor cleaning up. commit 16927b3dc619e829df9672e01657ca84e7973a66 Author: Alan Garny Date: Thu Oct 17 18:28:29 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin commit de7f698b7bc37749e1c4b0dcedcb01e87c536070 Author: Alan Garny Date: Thu Oct 17 18:25:20 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin commit f7fdd7b4ed4b1cfae7e98679dfa1382e45cf2070 Merge: 1f04c1787 fc03a459f Author: Alan Garny Date: Thu Oct 17 18:24:38 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin commit 1f04c1787f1d3ee7fabe8670e8a7c18acbd892aa Author: Alan Garny Date: Thu Oct 17 18:23:20 2019 +1300 Some minor cleaning up. commit fc03a459f5acf49cbdea6973112093fd4670b355 Merge: 18fb385a4 4245711d1 Author: Alan Garny Date: Thu Oct 17 18:22:14 2019 +1300 Some minor cleaning up. commit 4245711d128aa670a7399bcad1e79f4e63569b78 Author: Alan Garny Date: Thu Oct 17 17:34:10 2019 +1300 Some minor cleaning up. commit 0c72485d388ab830aca64eccee1f1138819d533a Author: Alan Garny Date: Thu Oct 17 17:34:01 2019 +1300 Some minor cleaning up. commit 48d3ba425ee03c809637c3db403d4ab9dba233eb Author: Alan Garny Date: Thu Oct 17 17:09:17 2019 +1300 Some minor cleaning up. commit 01ea1c26b2a88e3e40561d5def67dcc35801c66a Author: Alan Garny Date: Thu Oct 17 17:05:56 2019 +1300 Some minor cleaning up. commit 81b3061c6a7286d36f1309210578c97a2d6af272 Author: Alan Garny Date: Thu Oct 17 16:04:38 2019 +1300 Python: renamed our Shell scripts. commit 6c26a783ab2882d52e17ccd40a22986b44be4f6f Author: Alan Garny Date: Thu Oct 17 14:50:28 2019 +1300 Some minor cleaning up. commit ec385cd85a2fd55c5d6bb775d20191e8afdf2ed4 Author: Alan Garny Date: Thu Oct 17 14:41:41 2019 +1300 Python: have our `xxx.sh` Shell scripts deployed as `xxx` [ci skip]. commit 1b2e4c11402bbd7c2e868019aea33cae842fceb0 Author: Alan Garny Date: Thu Oct 17 14:18:14 2019 +1300 Some minor cleaning up. commit 1b99a5b877ec06ddf376e105f776481eb75e2505 Author: Alan Garny Date: Thu Oct 17 14:11:00 2019 +1300 Revert "Python: renamed some scripts [ci skip]." This reverts commit e6600abb259efc3ca5d4e02e0edffa6402f040e6. Indeed, on Linux, the filename for our OpenCOR application is `OpenCOR` and so is the one for our application script, so... that can'\''t work, hence we revert and are instead going to rename files when installing them. commit e6600abb259efc3ca5d4e02e0edffa6402f040e6 Author: Alan Garny Date: Thu Oct 17 14:01:00 2019 +1300 Python: renamed some scripts [ci skip]. commit 5d4d08e415f3c1a14d1109ce81ae3af48019ca0d Author: Alan Garny Date: Thu Oct 17 12:31:08 2019 +1300 Python: renamed some scripts [ci skip]. commit 39aa4dccac475838fa9120d080a1b56e6e40bd7d Author: Alan Garny Date: Thu Oct 17 12:10:04 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. [ci skip] The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit aa29cc1d0a47b1629b4165d450dd7298c7315146 Author: Alan Garny Date: Wed Oct 16 18:40:23 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit 36355e65e92e60204f7c6adb82f31be569955c0b Author: Alan Garny Date: Wed Oct 16 18:34:20 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit 44031312e4d6fc14bb0b5049d7a409d079e4c5a4 Author: Alan Garny Date: Wed Oct 16 18:21:12 2019 +1300 Some minor cleaning up. commit e252918c0dd815258d0282fb0514be34ac01c4ab Merge: af7a7f0c6 18fb385a4 Author: Alan Garny Date: Wed Oct 16 18:02:11 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin. commit 18fb385a49b8d1b233f7cf127a8c0d2a5f119c2f Merge: 2a6aad96d 49f03f2b2 Author: Alan Garny Date: Wed Oct 16 18:00:01 2019 +1300 General: updated our different developer scripts. commit af7a7f0c649748b5895cf8d53899cd8949b276fb Author: Alan Garny Date: Wed Oct 16 17:59:26 2019 +1300 Python: make our `ipythonconsole.sh` files configurable. commit e641693126fb42b9b6fd6cd3dfb272a42869a90a Author: Alan Garny Date: Wed Oct 16 17:54:44 2019 +1300 Python: make `ipythonconsole.bat` configurable. commit 77b768969aa0eb5d8c50d94d3ba98fa37d8d61e4 Author: Alan Garny Date: Wed Oct 16 17:54:10 2019 +1300 Some minor cleaning up. commit 49f03f2b2ef506948b92206d0a9b40761b39a143 Author: Alan Garny Date: Wed Oct 16 17:38:01 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 6dfdeba94522a5f1c2db964c9fb8972c67572445 Author: Alan Garny Date: Wed Oct 16 17:14:30 2019 +1300 Python: some minor cleaning up. commit b960c79a99b88b3f7fe1783df01430b362cce018 Author: Alan Garny Date: Wed Oct 16 17:14:10 2019 +1300 Python: renamed some scripts. commit f17bcaaa770baa8bd63aad64961dce3036b04fda Author: Alan Garny Date: Wed Oct 16 17:13:41 2019 +1300 Some minor cleaning up. commit ad14917d0ebf803d9feb2a34a57e8916fd9fb652 Author: Alan Garny Date: Wed Oct 16 16:44:57 2019 +1300 Python: some minor cleaning up of our various Python-related scripts. commit 75726d8297cd39d4e4355e01ca0229c2c92fa7dc Author: Alan Garny Date: Wed Oct 16 16:26:04 2019 +1300 Some minor cleaning up. commit 405ad80c19e3fbd1f4f2d747e987050528f4d0a4 Author: Alan Garny Date: Wed Oct 16 16:19:51 2019 +1300 General: make sure that our deployed Windows scripts can be run from anywhere. ... and thus be consistent with what is now done for ou Linux and macOS scripts. commit 54ffac424164e37b87b9cb06d2e25931f1b038b1 Author: Alan Garny Date: Wed Oct 16 16:02:45 2019 +1300 Some minor cleaning up. commit 9acc9760e805132a5b46788c17b0f1f7731d8a72 Author: Alan Garny Date: Wed Oct 16 15:52:03 2019 +1300 Python: renamed some scripts. commit 1540de1fdf0ebd9a97227bbaf91afe0410b8fb6d Author: Alan Garny Date: Wed Oct 16 15:14:02 2019 +1300 Some minor cleaning up. commit 6f60993bdde226d7e8fa8a448f8e68a6c6a70c87 Author: Alan Garny Date: Wed Oct 16 15:08:48 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 47548d6a6119bdd637f825ecfcc761c5dd100f6f Author: Alan Garny Date: Wed Oct 16 15:03:51 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a87902b20ada99b885c58c22ceb86bc7d8ff4f42 Author: Alan Garny Date: Wed Oct 16 14:30:14 2019 +1300 General: updated our different developer Batch and VBScript files. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a2304150395a79567d7a0a5a214b8d0c752fd65c Author: Alan Garny Date: Wed Oct 16 13:02:26 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 56bcacee8eae75cb46d24cd95f84fc5816e8f43f Author: Alan Garny Date: Wed Oct 16 10:42:58 2019 +1300 Python: made our various distribution Shell scripts executable. commit 41e1407a6fbddba53f10a45442406f959f3fe450 Author: Alan Garny Date: Tue Oct 15 18:14:41 2019 +1300 Some minor cleaning up. commit 46671013d3590785f0332b6c419f31e57721ce62 Author: Alan Garny Date: Tue Oct 15 17:51:18 2019 +1300 Python: renamed our `PythonQtConsoleWindow` plugin to `PythonConsoleWindow`. commit 7884231fa8eca5f3ee4c214efc87691931791ef9 Author: Alan Garny Date: Tue Oct 15 17:34:22 2019 +1300 Some minor cleaning up. commit 580e47bf166703bacf25a8c80062c3dfd9416d28 Author: Alan Garny Date: Tue Oct 15 17:22:30 2019 +1300 Some minor cleaning up. commit 49b4d530e61bc9e522123c7af134eafcad856c29 Merge: 05ecada9d 2a6aad96d Author: Alan Garny Date: Tue Oct 15 16:18:46 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin commit 2a6aad96d075257980104c803bccd04973b305cb Merge: aeccb6986 601c7a574 Author: Alan Garny Date: Tue Oct 15 16:02:05 2019 +1300 Cleaning up. commit 601c7a57414ef371ac2bbc43ed6f761c160d9ae1 Author: Alan Garny Date: Tue Oct 15 14:56:23 2019 +1300 Some minor cleaning up. commit 05ecada9d85a26a1180dd7f06b8ae088a4f3e9d6 Author: Alan Garny Date: Tue Oct 15 14:55:35 2019 +1300 Some minor cleaning up. commit e4f36376e75ae197d1c0150a15751d67e48697ee Author: Alan Garny Date: Tue Oct 15 14:48:29 2019 +1300 CMake: improved the way we build our plugins and packages. commit d726acd37a7a3a5079781afa39f7d93ea946383f Author: Alan Garny Date: Tue Oct 15 14:34:01 2019 +1300 Some minor cleaning up. commit 7bcaf499788eaa222aa3fd01907f9fd3ced564bf Author: Alan Garny Date: Tue Oct 15 14:16:19 2019 +1300 CMake: renamed `PYTHON_VERSION` to `PYTHON_SUPPORT` and `GUI_VERSION` to `GUI_SUPPORT`. More meaningful this way, not to mention that `PYTHON_VERSION` is used elsewhere in our CMake code! commit ab8a8f8ecb7d0a5b370dbd076b8b13d20343aaa7 Author: Alan Garny Date: Tue Oct 15 13:55:35 2019 +1300 Some minor cleaning up. commit cc29b06fbc40d05162114dc6592ce4919525274a Author: Alan Garny Date: Tue Oct 15 13:54:28 2019 +1300 CMake: improved the way we build our plugins and packages. commit 20269f819b5ae32d6b41909c98681c68b906ce24 Author: Alan Garny Date: Tue Oct 15 13:35:16 2019 +1300 Some minor cleaning up. commit 958f9f570e5bb43bb80eb17bc27e503e3bc23b57 Author: Alan Garny Date: Tue Oct 15 13:26:27 2019 +1300 Some minor cleaning up. commit e68fee89d14661cbdc94d1f56b485933e068c7fa Author: Alan Garny Date: Tue Oct 15 13:10:50 2019 +1300 Some minor cleaning up. commit b36236520bb1ef612bca0d0d6efc206bed175259 Author: Alan Garny Date: Tue Oct 15 09:48:16 2019 +1300 Python: temporarily rely the `win-debug` branch of `dbrnz/python-cmake-buildsystem`. See https://github.com/opencor/opencor/pull/2160#issuecomment-541552006 for the rationale behind it. commit 8238e3220acb3da04c4ef238fb5491c82da8ee87 Author: Alan Garny Date: Mon Oct 14 18:34:25 2019 +1300 Python: some minor cleaning up. I am assuming that `set(GIT_TAG "win-debug")` was a leftover of @dbrnz working on Windows+Debug version of Python. commit c7b5c81e88f8456de8c6c829622201ba912c4c06 Author: Alan Garny Date: Mon Oct 14 18:15:51 2019 +1300 Python: replaced our CMake `EXCLUDE_PYTHON` definition with `PYTHON_VERSION`. To be consistent with our use of `CLI_VERSION`, which we have incidently renamed to `GUI_VERSION`. commit 17ae87bffe0d769b71c098a466664eb2c3e77d77 Author: Alan Garny Date: Mon Oct 14 17:34:35 2019 +1300 Python: replaced our CMake `EXCLUDE_PYTHON` definition with `PYTHON_VERSION`. To be consistent with our use of `CLI_VERSION`, which we have incidently renamed to `GUI_VERSION`. commit 79f3f2f1147c2158819ab3905d1557169e8ae793 Author: Alan Garny Date: Mon Oct 14 17:03:25 2019 +1300 Python: some minor cleaning up with the use of our Python interface file. commit 63348d94bcdc27e2c2dccfe5eeb86161996b07d5 Author: Alan Garny Date: Mon Oct 14 16:56:41 2019 +1300 Python: renamed `Python Qt` to `PythonQt`. This is how it is called...! commit 20fa0e808e7e310b896575427583076fe23bbb1d Author: Alan Garny Date: Mon Oct 14 16:45:30 2019 +1300 Python: we don'\''t need QtQuickWidgets. commit 9c8f2c25a6f300313a0735e89573c6611c55724d Author: Alan Garny Date: Mon Oct 14 15:58:20 2019 +1300 Python: deleted `src/plugins/thirdParty/Python/cmake/FindSQLite3.cmake`. Indeed, a similar file is now part of CMake (as of version 3.14, which is the minimum version of CMake that we need to build OpenCOR). commit 2ad119399e4a6ee6f3c2d23ec955d4ac2ca2709f Author: Alan Garny Date: Mon Oct 14 14:56:26 2019 +1300 Python: renamed a couple of plugins. - `src/plugins/miscellaneous/Python` to `src/plugins/miscellaneous/PythonShell`; and - `src/plugins/thirdParty/PythonLibrary` to `src/plugins/thirdParty/Python`. commit 4b06c46ffd2cd2e7f538a516d375b7227cdd3430 Author: Alan Garny Date: Mon Oct 14 12:26:11 2019 +1300 Revert "Some minor cleaning up." This reverts commit 4f53bd09eca4bc726013990d16086bb72949b97f. Oops, we indeed need to do this before copying the file over! commit 607f2282aa5b0ba5665a2ff4fa611bac7aaf1741 Author: Alan Garny Date: Mon Oct 14 12:24:15 2019 +1300 Python: renamed a couple of plugins. - `src/plugins/miscellaneous/Python` to `src/plugins/miscellaneous/PythonShell`; and - `src/plugins/thirdParty/PythonLibrary` to `src/plugins/thirdParty/Python`. commit 224b0b1b6f1385257e99c56cb4340ac1434d7249 Author: Alan Garny Date: Mon Oct 14 11:29:58 2019 +1300 Python: renamed `USE_PREBUILT_PYTHON_LIBRARY_PACKAGE` to `USE_PREBUILT_PYTHON_PACKAGE`. commit c87b9f84db5aaf2ac1ff748fd2df02e04beec582 Author: Alan Garny Date: Mon Oct 14 11:22:58 2019 +1300 Python: use the Python CMake build system available under the OpenCOR organisation. commit 4f53bd09eca4bc726013990d16086bb72949b97f Author: Alan Garny Date: Mon Oct 14 10:11:42 2019 +1300 Some minor cleaning up. commit 8be9b60ba2874fe06269d7369a9a0755105670f6 Merge: 8860cec95 aeccb6986 Author: Alan Garny Date: Fri Oct 11 20:37:51 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin. commit aeccb6986e4fe93fba978455c3a3d75adc9ecc6f Merge: 9507a3c3d ca3514eb9 Author: Alan Garny Date: Fri Oct 11 20:23:08 2019 +1300 SED-ML: some refactoring. commit ca3514eb98c44e532219d528d66f9279fafdaeb9 Author: Alan Garny Date: Fri Oct 11 19:47:17 2019 +1300 SED-ML: some refactoring. This is in preparation for our support for SED-ML L1V4. commit 8860cec95c7da74fcaf79eb312e495994348a84f Merge: 7b90c94c6 9507a3c3d Author: David Brooks Date: Fri Oct 11 13:20:32 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit 9507a3c3d9d85ec346ad9c5bdc2bbb45683be54c Merge: c4ab91891 ba1c60a01 Author: Alan Garny Date: Fri Oct 11 12:41:25 2019 +1300 Simulation Experiment view: make sure that all of a solver'\''s properties get saved to a SED-ML file (closes #2185). commit 7b90c94c678f9426245eff4feb809345a64bdf89 Author: David Brooks Date: Fri Oct 11 12:36:54 2019 +1300 Python: new `PythonLibrary` packages for Windows. commit ba1c60a01e0e3f42e856dfbb97d6ba28d840bf23 Author: Alan Garny Date: Fri Oct 11 12:10:27 2019 +1300 Slight update to our downloads and what is new pages. commit cb29d9d07c9676cef3eb45988cdce78c190fe0bf Author: David Brooks Date: Fri Oct 11 12:09:20 2019 +1300 Python: get backslash escaping right when checking script shebang line under Windows. commit 3f7301b50e9f7d3f0a47117bcad394c768843604 Author: Alan Garny Date: Fri Oct 11 12:06:16 2019 +1300 Simulation Experiment view: make sure that all of a solver'\''s properties get saved to a SED-ML file (#2185). commit b65471f5eb1f3bf380f1ca74048e3618477d98f2 Author: Alan Garny Date: Fri Oct 11 09:35:16 2019 +1300 Some minor cleaning up. commit 9c609992613c09e8c0bc84a68378d6918c901c94 Author: David Brooks Date: Thu Oct 10 20:14:37 2019 +1300 Python: update pre-built `PythonLibrary` packages for Windows. commit 4aba66b9228a545e5e472fe92a4373250deec1e2 Author: David Brooks Date: Thu Oct 10 09:25:46 2019 +1300 Python: update pre-built `PythonLibrary` packages for macOS and Linux. commit c4ab91891517d6985386acb744fe745907ae3d9e Merge: 6b94e8263 23211b5bf Author: Alan Garny Date: Thu Oct 10 13:25:43 2019 +1300 Some minor cleaning up. commit 23211b5bf842f4faacc7ce16091b5c03e6950f64 Author: Alan Garny Date: Thu Oct 10 11:58:27 2019 +1300 Some minor cleaning up. commit 6b94e826339a9e24503f6cf780f1d740c6315535 Merge: 3810d6ead 7dc34b1ff Author: Alan Garny Date: Wed Oct 9 16:37:22 2019 +1300 Cleaning up. commit 7dc34b1ff5c868cc63740af0a3abbe7c743f9338 Author: Alan Garny Date: Wed Oct 9 16:16:30 2019 +1300 Some minor cleaning up. commit 011e52c226b3ac76e949c55864e14c133b7cb081 Author: Alan Garny Date: Wed Oct 9 15:59:42 2019 +1300 Some minor cleaning up. commit 5e475178b90eef33f513bfebdf4a4b8437c1685a Author: Alan Garny Date: Wed Oct 9 15:15:10 2019 +1300 Some minor cleaning up. commit 5825b30919a1bbc2ea92ea6fcfe3a9a6bcda6117 Author: Alan Garny Date: Wed Oct 9 14:00:50 2019 +1300 Some minor cleaning up. commit a266955a3cc14354c8343796117482f0a64ea9e5 Author: Alan Garny Date: Wed Oct 9 13:04:47 2019 +1300 Some minor cleaning up. commit 2df57b0cfe1b4701a39e69ece4a4bf24f3d6f9e4 Author: Alan Garny Date: Wed Oct 9 14:59:11 2019 +1300 GraphPanel widget: improved our tracking/restoring of colours. Note that it only make sense to retrieve our original colours if we have some graphs and that it'\''s the same number as the number of graph colours that were originally tracked. Indeed, say that that you have a SED-ML file that has a couple of curves including an invalid one (e.g. one of the variables doesn'\''t exist) then it means that only graph colours will be tracked. Then, if we are to correct the SED-ML file outside of OpenCOR. To go back to OpenCOR will trigger us to reload the SED-ML file. If we do so then the number of graphs won'\''t be the same as the number of graph colours, hence the test (not to mention that it prevents a crash because of the out-of-bound index!). commit f57e6d5b11567d5f176e00f8989125750a555a5c Author: David Brooks Date: Wed Oct 9 14:06:47 2019 +1300 Python: allow for `python3` and `python3.x` as name of executable when setting path to Python. commit 68fe128678fd5e4c6a7af3f4102ee1424a304a08 Author: David Brooks Date: Tue Oct 8 11:53:57 2019 +1300 Python: tidy up build dependency code, making sure that the path to Python is set in scripts *before* they are used. commit 802a12aeaa2471fa4863148d8b71b4f0fa77c938 Merge: a11a82c71 1f297b8bd Author: David Brooks Date: Tue Oct 8 10:22:42 2019 +1300 Merge branch '\''pythonplugin'\'' of github.com:dbrnz/opencor into pythonplugin commit a11a82c71d21ac5fe1a8df2f4890b681fd224253 Merge: 0f94a3ceb 3810d6ead Author: David Brooks Date: Tue Oct 8 10:22:06 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit 3810d6eadd94cfb5d1d2e8b7b65f9821e2d5fde5 Merge: f44e9f38c e693ac24f Author: Alan Garny Date: Tue Oct 8 09:09:00 2019 +1300 Packaging: improved error reporting when `create_package_file` fails (closes #2175). commit 1f297b8bdfa03d320a61a7e974114e095c4e62fe Merge: 0f94a3ceb f44e9f38c Author: Alan Garny Date: Mon Oct 7 19:09:20 2019 +1300 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin. commit e693ac24ff08b1e7867a766014e8c7ef1315de0d Merge: 1dd62b24a f44e9f38c Author: Alan Garny Date: Mon Oct 7 19:08:19 2019 +1300 Merge branch '\''master'\'' into issue2175. commit f44e9f38ce9ad8b271afbac3babda2b549bb65bb Merge: f8774601f ac692d815 Author: Alan Garny Date: Mon Oct 7 19:06:47 2019 +1300 Mesa: upgraded to version 19.2.0 (closes #2180). commit ac692d81505d27a87e51f113bf011f5bb2a6e4cd Author: Alan Garny Date: Mon Oct 7 18:43:01 2019 +1300 Revert "Python: documentation builds require Python and its packages to be fully installed." This reverts commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1. commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1 Author: Alan Garny Date: Mon Oct 7 18:39:24 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit 1bdbb856645a392d078cf8171fe6f019f8c5ae83 Author: Alan Garny Date: Mon Oct 7 18:31:11 2019 +1300 Slight update to our downloads page (#2180). commit bc7971565005d8ea5120065467dc9b5f9ee1fe33 Author: Alan Garny Date: Mon Oct 7 18:26:54 2019 +1300 Mesa: upgraded to version 19.2.0 (#2180). commit 0f94a3ceb0611107919cba0a723136b08891aae8 Merge: 2e11ac8d2 f8774601f Author: David Brooks Date: Mon Oct 7 10:48:07 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit 2e11ac8d2c2ab034217d61331a508dd4bfaa4bbc Author: David Brooks Date: Fri Oct 4 20:56:32 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit f8774601fd27d4b7fe17830533df51c0f8346c1a Merge: fd80a0b8f 44b10f41b Author: Alan Garny Date: Fri Oct 4 11:40:25 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file (closes #2176). commit 44b10f41bd461378e1e30cddd568927b1357bb4c Author: Alan Garny Date: Fri Oct 4 10:59:50 2019 +1300 Reverting part of commit 13a0ef1. Indeed, if everything works fine (with our copy of Sphinx) then we shouldn'\''t have to clean our `ext/doc` folder. So, the fact that we are having some problems with our copy of Sphinx means that it must be related to our packaging of Python and its packages? commit 268e5efa98a9926bdece64a0008848589aef2925 Author: Alan Garny Date: Fri Oct 4 10:41:26 2019 +1300 Slight update to our downloads page (#2176). commit 60724119ea4f63c821492e59b129859cc82e032e Author: Alan Garny Date: Fri Oct 4 10:39:50 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file (#2176). This issue was that we were tracking the original settings using a graph'\''s address as a key. However, when reloading a SED-ML file, that address changes since a graph gets removed and then readded. commit 949cefef9c7da5e4279555cbd704fca703545975 Author: David Brooks Date: Thu Oct 3 15:06:33 2019 +1300 Python: update PythonPackages for Windows debug mode. commit dfb41c1342b0e711c2bb43407709036a574dccb0 Author: David Brooks Date: Thu Oct 3 15:03:28 2019 +1300 Python: don'\''t try to package directories that don'\''t exist in Windows debug mode. commit a1b50b902c5d2fb1f6b4e7aa24bae067388e1ea5 Author: David Brooks Date: Thu Oct 3 15:02:34 2019 +1300 Python: only install a minimal set of packages in Windows debug mode. commit c57c9b742ede60264f9fe32f3bc97e78040f0a7b Author: David Brooks Date: Thu Oct 3 15:00:02 2019 +1300 Python: build Windows debug mode package for Python Qt. commit 1dd62b24a2b0bf4cc6838f08e2364769a5dd8dce Author: Alan Garny Date: Thu Oct 3 14:47:22 2019 +1300 Packaging: improved error reporting when `create_package_file` fails (#2175). commit fd80a0b8f8c149d20fa60566252ed5d5ed28a935 Merge: 74163c086 5d0249760 Author: Alan Garny Date: Thu Oct 3 13:26:40 2019 +1300 SED-ML: added support for left and right triangle symbols (closes #2173). commit 5d0249760178b8ce15dcb7a99cd23ef781d3a8ba Author: Alan Garny Date: Thu Oct 3 12:54:37 2019 +1300 Slight updates to our downloads and what is new pages (#2173). commit 8be0875ade6c1a26038dabeeda1acfdcf64e66d8 Author: Alan Garny Date: Thu Oct 3 12:47:24 2019 +1300 SED-ML: added support left and right triangle symbols (#2173). commit 8126e51458205205cfed32b3122342531e2e39e0 Author: David Brooks Date: Wed Oct 2 16:07:30 2019 +1300 Python: work on debug build of Python under Windows. commit 74163c0865363fe4d1074bec631fadfe683c17cb Merge: c1e2f9897 13a0ef14b Author: Alan Garny Date: Wed Oct 2 09:54:26 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties (closes #2171). commit 13a0ef14b6d5f5586aee421a6f9cf774d12235b7 Author: Alan Garny Date: Wed Oct 2 09:35:54 2019 +1300 We shouldn'\''t always build our documentation afresh. Indeed, if you run `./cleanall` and `./make` then OpenCOR will build fine. However, if you rerun `./make` straight after that, you will be told that `[OpenCOR]/ext/doc/user` (or `[OpenCOR]/ext/doc/developer`, depending on which one gets built first) doesn'\''t appear to contain a CMakeLists.txt file. So, instead, we have to update our `./clean` script to always clean our `[OpenCOR]/ext/doc` folder. commit af6e68ddc222bc71df76162ed8d9b2b816b69343 Author: Alan Garny Date: Wed Oct 2 09:14:53 2019 +1300 Slight updates to our downloads and what is new pages (#2171). commit 3354ef343852ba4feb14a948e6e8dcf580068a3e Author: Alan Garny Date: Wed Oct 2 09:11:43 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties (#2171). commit 7a9f397a7f0ac4672d47898bffa10106aa708db7 Author: Alan Garny Date: Tue Oct 1 16:17:58 2019 +1300 Make Clang-Tidy happy. commit c1e2f989701f62599f30df55262825eb62993e3c Merge: d8057d800 53a979246 Author: Alan Garny Date: Tue Oct 1 10:27:11 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit 53a979246b7c4fbba85522a59104dc942b65e19f Author: Alan Garny Date: Tue Oct 1 10:07:29 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit d8057d8005bed46548c22f260353f5db5a8d24bb Merge: 7064c6213 becf72ade Author: Alan Garny Date: Mon Sep 30 18:13:55 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit becf72ade0c8ef0c979032e3938a8a42328783b8 Author: Alan Garny Date: Mon Sep 30 17:45:18 2019 +1300 Always build our documentation afresh. commit 22e6cc86dca0d2234ead1ba6f06b5281ec63aca0 Author: Alan Garny Date: Mon Sep 30 17:13:20 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit fe1b1409c938eefad7c79d15ef12854747037000 Author: Alan Garny Date: Mon Sep 30 17:08:27 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit c85a857b3c833bba5a0febf8bfef425692115f0b Merge: c71d8e62a 39b5818d1 Author: David Brooks Date: Mon Sep 30 14:09:13 2019 +1300 Merge branch '\''pythonplugin'\'' of github.com:dbrnz/opencor into pythonplugin commit c71d8e62a2b0269a888c0e6083db9d1a7bd8818f Author: David Brooks Date: Mon Sep 30 14:04:22 2019 +1300 Python: don'\''t write wide characters to standard output as each wide character is now `NUL` padded under Windows, presumably because Python initialisation correctly sets up Unicode output. commit e8470312a9f194553bf2b4deaaad5e3378e75e90 Merge: 80f459842 7064c6213 Author: David Brooks Date: Sun Sep 29 13:28:01 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit 39b5818d1f0bebd50200152b4583a24788798500 Merge: 1cf2665c1 7064c6213 Author: Alan Garny Date: Sat Sep 28 16:20:33 2019 +1200 Merge remote-tracking branch '\''upstream/master'\'' into pythonplugin commit 1cf2665c1c47c7239e48058062faff4b3d45dcdc Author: Alan Garny Date: Sat Sep 28 16:17:00 2019 +1200 Some minor cleaning up. commit 7064c62130274d4bf2398dfae14943549138074e Merge: 0ef494a7f 06fec5909 Author: Alan Garny Date: Sat Sep 28 16:08:11 2019 +1200 Windows: prevent `clean[all].bat` from deleting `.gitignore` if it is not hidden (closes #2167). commit 06fec5909378e8fd0b6eaae35b0858b81bade57e Author: Alan Garny Date: Sat Sep 28 15:36:19 2019 +1200 Windows: prevent `clean[all].bat` from deleting `.gitignore` if it is not hidden (#2167). commit 80f459842654395a5612a989e51e33ed0ed60662 Author: David Brooks Date: Fri Sep 27 20:28:40 2019 +1200 Python: remove debugging code. commit 22ba2c2f129446cfb00d3261fca41033e5108a63 Author: David Brooks Date: Fri Sep 27 20:26:45 2019 +1200 Python: for Windows use PythonQt'\''s pre-built debug mode plugin. commit 74993e6f08e54c2ca91e2666055a127b7d696da4 Merge: aacc4fbc9 0ef494a7f Author: David Brooks Date: Fri Sep 27 19:32:04 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 0ef494a7f4e0f493d6dbe5cea8b1c68589f57b02 Merge: c468fc010 330ad7aad Author: Alan Garny Date: Fri Sep 27 18:33:43 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit 330ad7aadce8fdeff724543c3f0431188ee78095 Author: Alan Garny Date: Fri Sep 27 14:51:24 2019 +1200 Some minor cleaning up. commit f7245a5b1e146aee28605277605515c18c645126 Author: Alan Garny Date: Fri Sep 27 14:50:05 2019 +1200 Some minor cleaning up. commit 870b1822c0034f135777b798ccbc7697800d6aa7 Author: Alan Garny Date: Fri Sep 27 14:37:41 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). We are ignoring any previous version of Qt (because of that break between Qt 5.12.4 and Qt 5.12.5). commit aacc4fbc9ce85c007807213f500770d6fc6f58e7 Author: David Brooks Date: Fri Sep 27 14:27:14 2019 +1200 Python: revert to using the `official` documentation sources. commit ade7d61b5ab35aece442c45fe2b46d1206f3fd21 Author: David Brooks Date: Fri Sep 27 14:17:02 2019 +1200 Python: reinstate build of developer documentation that was excluded for debugging CI builds. commit cc6363e49c101b9e5d93809ecd47513a91d42fa0 Author: David Brooks Date: Fri Sep 27 14:11:44 2019 +1200 Python: only use the debug PythonQt library if we are building it, presumably for debugging. commit 5b72949fecad2d57e72ae8e62adc9565bd70ec10 Author: Alan Garny Date: Fri Sep 27 14:06:04 2019 +1200 Some minor cleaning up. commit 99db190d5aeef7e275a54a1f94075c32dfe5c2ff Author: David Brooks Date: Fri Sep 27 12:57:10 2019 +1200 Python: actually build the `SAMPLE` and `TEST` plugins. commit fb37f1dcaae9f849b9f82a660039cfc3c9d551e6 Author: David Brooks Date: Thu Sep 26 19:39:59 2019 +1200 Python: update CLI tests for Python plugins. commit 6b006fac18d81e4cbf8828474f2ed586eb3c376f Author: David Brooks Date: Thu Sep 26 19:38:08 2019 +1200 Python: use a better name for Python shell plugin. commit 646b7dd6bf565b26d2ea1bd64e7c1156ce86375c Merge: cdefe735b c468fc010 Author: David Brooks Date: Thu Sep 26 15:45:54 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit c468fc0101e3c99a73166cf6781dc3136dc77e84 Merge: fdea64b1e 6cbf0687b Author: Alan Garny Date: Thu Sep 26 15:23:01 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (closes #2161). commit 6cbf0687baa85cad24b95434d69848e5bf33f8d7 Author: Alan Garny Date: Thu Sep 26 15:05:19 2019 +1200 LLVM+Clang: make sure that we can use it on Windows (#2161). commit ea4a8f695ae5073d1ab92e3740db29a50f040dcc Author: Alan Garny Date: Thu Sep 26 14:44:19 2019 +1200 Core: renamed the `DummyMessageHandler` class in our MathML tests. Indeed, there used to be two `DummyMessageHandler` classes. One in our MathML tests and one in our Core CLI utilities, and the compiler now (!?) complains about it on macOS. commit cdefe735b2f866b3fa9af2a30eace17de9e550ed Author: David Brooks Date: Thu Sep 26 13:09:05 2019 +1200 Python: more debugging. commit dee20376988be3e0bf81255b184b161de974bf7c Author: Alan Garny Date: Thu Sep 26 11:35:11 2019 +1200 Slight update to our downloads page (#2161). commit 3b7abbcdab99066111551003f372d911ddd117b8 Author: Alan Garny Date: Thu Sep 26 11:30:54 2019 +1200 Revert "Only build LLVM+Clang." This reverts commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab. commit 1ed0f60fa0503f57374c0f821897231f21b84f5e Author: Alan Garny Date: Thu Sep 26 11:30:48 2019 +1200 LLVM+Clang: binaries for version 9.0.0 (#2161). commit 268c6d0bf3acbe26752fd66785e1242804eb0509 Author: David Brooks Date: Thu Sep 26 10:16:16 2019 +1200 Use our documentation fork for testing... commit 378ab3e097cc9cd9dc8627cf7f50e1ac58b520d0 Author: David Brooks Date: Thu Sep 26 10:15:28 2019 +1200 Python: only build documentation if we have a pre-built Python. commit 5db59d52b70787c4212927ae873744e902dda105 Author: Alan Garny Date: Thu Sep 26 07:29:48 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit abea9a9ac86b17b847510002f45773e4158912d0 Author: Alan Garny Date: Thu Sep 26 07:01:10 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 3f8c0ef65cdbe4adde3c057ea01f6ab68348edb8 Author: Alan Garny Date: Thu Sep 26 06:37:05 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 39b90145d356e468efd8801e1df259b1ba590723 Author: Alan Garny Date: Wed Sep 25 21:13:01 2019 +1200 LLVM+Clang: ignore a warning on Windows (#2161). commit be74c897400994e37363e388beee2835f9a46321 Author: David Brooks Date: Wed Sep 25 15:06:18 2019 +1200 Python: try removing quotes when defining environment for `SPHINX_EXECUTABLE`. commit 3d6c26850c646491ce47c3c3698e12d490ecd65a Author: Alan Garny Date: Wed Sep 25 09:39:21 2019 +1200 Revert "LLVM+Clang: upgraded to version 9.0.0 (#2161)." This reverts commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3. commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3 Author: Alan Garny Date: Wed Sep 25 09:34:38 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit f3a911e0264079a09e32d44c442346ce819fdac9 Author: Alan Garny Date: Wed Sep 25 08:34:08 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 64762d9f09adda276e0c5a07048f3466f73ff99b Author: Alan Garny Date: Tue Sep 24 14:44:40 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab Author: Alan Garny Date: Tue Sep 24 14:44:20 2019 +1200 Only build LLVM+Clang. commit fdea64b1ef2ba058df6c1e3be0bcf7ffb9aa28df Merge: cdf4c5b98 186aefefb Author: Alan Garny Date: Tue Sep 24 11:30:06 2019 +1200 Batch files / shell scripts: make sure that a directory exits before changing to it (closes #2159). commit 186aefefba369a71ee2a540e204ce64aa5b98e44 Author: Alan Garny Date: Mon Sep 23 19:19:00 2019 +1200 Shell scripts: make sure that a directory exits before changing to it. commit f124e79eb9d53fe9c15d35a5670f59747d96d9aa Author: Alan Garny Date: Mon Sep 23 19:18:30 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 0c278625020d89caa96ae270b957a706c61b639d Author: Alan Garny Date: Mon Sep 23 19:04:35 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 35b119b24670e6696764869b0a8533d35d823367 Author: Alan Garny Date: Mon Sep 23 19:00:08 2019 +1200 Some minor cleaning up. commit 7729dde8528a3f16d3a74d6fdfe9e0f574372de5 Author: David Brooks Date: Fri Sep 20 19:18:36 2019 +1200 Python: update Windows packages for release. commit 05d8d16b847bdaf5cd7fc96c379107d47666584c Author: David Brooks Date: Fri Sep 20 19:03:06 2019 +1200 Python: update notes for building PythonQt under Ubuntu. commit 2ea198d6825e3db53fed305b1194755ec2a7f761 Author: David Brooks Date: Fri Sep 20 18:49:22 2019 +1200 Python: we'\''ve renamed the plugin that runs Python code files, so update helper scripts. commit c88ab410626f806ffab7b003b8749bf48ffe2a89 Author: David Brooks Date: Fri Sep 20 18:14:10 2019 +1200 Python: update Linux packages for release. commit e4653679c922f04678eab11594c8f732471818af Author: David Brooks Date: Fri Sep 20 15:24:52 2019 +1200 Python: remove unused code. commit baeefa40657328d060fdc4a01ff43c4f0f0ee61c Author: David Brooks Date: Fri Sep 20 15:18:35 2019 +1200 Python: tidy up script and shell running. commit 45aaf14b6a08fca7d8e13203e28d0c5324608886 Author: David Brooks Date: Fri Sep 20 15:15:53 2019 +1200 Python: we don'\''t need to use `ctkAbstractPythonManager`. This also improves PythonQt cleanup and prevents a segmentation fault. commit 0c90f0230402b5fad8d7901b783fbb6fd18f5ce1 Author: David Brooks Date: Fri Sep 20 12:54:50 2019 +1200 Python: update macOS packages for release. commit 429cbf1c163fc072a5dcf157ce1f0c9874024fe2 Author: David Brooks Date: Fri Sep 20 12:14:01 2019 +1200 Python: tweak help text. commit de5e2d5db05ffab6362db25daf6d992619482dc0 Author: David Brooks Date: Fri Sep 20 11:50:25 2019 +1200 Python: use better names for library and script runner plugins. Rename `Python` to `PythonLibrary` and `PythonRunScript` to `Python`. commit 6208bedb3011c7a0047eb2316172dff942157ca2 Merge: 1975c91bc cdf4c5b98 Author: David Brooks Date: Thu Sep 19 21:21:26 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 1975c91bcad2a37ad07b1eb05b9f4f6312266b7a Author: David Brooks Date: Thu Sep 19 21:19:04 2019 +1200 Python: updated pre-built packages for Windows. commit b98514aa8bf9d45076522bb04cabf1d51484d8e6 Author: David Brooks Date: Thu Sep 19 21:18:13 2019 +1200 Python: PythonQt library under Windows doesn'\''t have version in its name. commit e56ac6be9e7d560f1c5b7b4e03430a6896d3e9c9 Author: David Brooks Date: Thu Sep 19 21:17:09 2019 +1200 Python: we in fact need to use `EXTERNAL_EXTERNAL_FILES_TARGET` when setting `PYTHON_DEPENDENCIES` to prevent circular references. commit f64a645a4cb42e7a8972e516c4ab2559776f8bea Author: David Brooks Date: Thu Sep 19 19:31:47 2019 +1200 Python: executable is still `python.exe` under Windows. commit 15e8200a98083653a2d6823b047ff75869c061fc Author: David Brooks Date: Thu Sep 19 19:26:39 2019 +1200 Python: we provide `zlib`, so turn off the `USE_BUILTIN_ZLIB` option (used by Windows'\'' builds). commit 32997016cd3fae44155e4e071fb8f8bec9926617 Author: David Brooks Date: Thu Sep 19 19:08:28 2019 +1200 Python: fix bad code from copy-and-paste... commit ab6c69251d78abb0be2c5dda03131734ffd71b65 Author: David Brooks Date: Thu Sep 19 19:06:08 2019 +1200 Python: correctly set `PYTHON_DEPENDENCIES` list. commit 4df570d62c111e86ed47056ba4f3edb60f647f8a Author: David Brooks Date: Mon Sep 16 09:06:59 2019 +1200 Python: PythonQt is now on GitHub, so base our version on it. commit c1579c0390d1a964180723cef4f7d2d3b875ede6 Author: David Brooks Date: Fri Sep 13 18:43:47 2019 +1200 Python: minor tidy up. commit f9e5d69c60054364da55fe21b35d19fb22d1d8fa Author: David Brooks Date: Fri Sep 13 18:43:22 2019 +1200 Python: improve error reporting when we can'\''t create a console widget. commit cc49c634574d6a2b12f35bf6546c94cf0d75fd90 Author: David Brooks Date: Fri Sep 13 18:41:05 2019 +1200 Python: update our bundled packages to their latest versions. commit 89d6c33a24e89f0bdef5352ef35790faa360b118 Author: David Brooks Date: Fri Sep 13 18:36:26 2019 +1200 Python: make sure the resulting library is writeable. commit 8fbabdaa2cbc67f478e46adea3c59c6d4964e8c9 Author: David Brooks Date: Fri Sep 13 18:35:36 2019 +1200 Python: upgrade to version 3.7.4. commit f6c18716d46d106ad1fe2a0d1b33f2b8e5966304 Author: David Brooks Date: Fri Sep 13 18:34:22 2019 +1200 Python: use `python3` as the Python executable. commit 55adfff090c66aadf30475ffbe6a5f65bf2153c2 Author: David Brooks Date: Fri Sep 13 18:32:56 2019 +1200 Python: tidy up `CMakeLists.txt`. commit 5321ed98584d76aaff0a1aa47eb03e8ec844e357 Author: David Brooks Date: Fri Sep 13 16:03:49 2019 +1200 Python: improve how we find SQLite 3 and update Windows version. commit 4bfdeabf5e87bb3623c82f8c1364cb8c9cd4eb2f Author: David Brooks Date: Fri Sep 13 15:32:30 2019 +1200 Python: use `python` as the command to either run a script or provide an interactive shell in the `PythonRunScript` plugin. commit 6ada9880168871a5280aab133a5cb71ca6e965ef Author: David Brooks Date: Fri Sep 13 15:30:28 2019 +1200 Python: the Python library plugin has to be built and installed **before** code that uses our Python interface. commit 43866aab8bd4bdb9edaa63bc2a2cd3bcdab32736 Author: David Brooks Date: Fri Sep 13 15:27:11 2019 +1200 Tidy up: remove redundant test. commit 1dbc57c74ae47267161b3d992e63529570b56342 Author: David Brooks Date: Fri Sep 13 13:15:47 2019 +1200 Python: We can'\''t use `;` as a list separator with `ExternalProject_Add`. commit 4f378c619e29c6ddcb8469edccc2c8d8db4f3c65 Author: David Brooks Date: Fri Sep 13 11:59:45 2019 +1200 Python: initialise `sys.argv`. commit 33587b6c1f84b9bd5d071ee0660d2e8e341d851c Author: David Brooks Date: Fri Sep 13 11:57:44 2019 +1200 Python: use interface begin/end wrappers. commit 9e6106a85002f5199d6e04a308e507b1cf9c73c9 Author: David Brooks Date: Fri Sep 13 11:55:31 2019 +1200 Python: initialise simulation and data store class members. commit 260a353fa56036f6a71dcf41b84886d2b0edb047 Author: David Brooks Date: Fri Sep 13 11:53:32 2019 +1200 Python: `DataStoreVariables` has to be a class for automatic PythonQt wrapper. commit cdf4c5b98426d00b917054d851ffce4f60970fa5 Merge: cbeb33fb0 f55ff467b Author: Alan Garny Date: Thu Sep 12 11:10:11 2019 +1200 OpenSSL: upgraded to version 1.1.1d (closes #2157). commit f55ff467bf4142db4516274c87ff90684a868dd6 Author: Alan Garny Date: Thu Sep 12 10:49:31 2019 +1200 Slight update to our downloads page (#2157). commit 66860afcb8b1b54ce9d42c4caa338a1955be2ae9 Author: Alan Garny Date: Thu Sep 12 10:48:10 2019 +1200 Slight update to our what is new page. commit 7553e4d309561da9e12c9ba1c544ab3292ce443c Author: Alan Garny Date: Thu Sep 12 10:45:51 2019 +1200 OpenSSL: binaries for version 1.1.1d (#2157). commit a4614911fafb2792fb9f9bec3149b6b9c5c848f0 Author: Alan Garny Date: Thu Sep 12 10:36:23 2019 +1200 Revert "Only build OpenSSL." This reverts commit cf420ec40fee9d47f5d607421617e5fde95d9a92. commit 633c8c997c5d73b2602f9315098e87ddcf871d2b Author: Alan Garny Date: Thu Sep 12 10:18:34 2019 +1200 OpenSSL: upgraded to version 1.1.1d (#2157). commit cf420ec40fee9d47f5d607421617e5fde95d9a92 Author: Alan Garny Date: Thu Sep 12 10:13:35 2019 +1200 Only build OpenSSL. commit cbeb33fb08c5360a6fc140116b8274e8502d9f6c Merge: c6af1c3c7 c296e2a75 Author: Alan Garny Date: Mon Sep 9 17:23:58 2019 +1200 New snapshot. commit c296e2a7559ba4f758903d526887860cfc53144b Author: Alan Garny Date: Mon Sep 9 16:41:41 2019 +1200 New snapshot. commit c6af1c3c72d80e47b3bccff508f2b14e1949526b Merge: 425ef9e97 84ea7cfe6 Author: Alan Garny Date: Mon Sep 9 16:36:42 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog (closes #2154). commit 84ea7cfe626c380f8441fe07dbe3f6138e705af0 Author: Alan Garny Date: Mon Sep 9 16:17:01 2019 +1200 Slight update to our downloads page (#2154). commit e6a54b02f2f04f09c36456910f33b3a43bc801bf Author: Alan Garny Date: Mon Sep 9 16:16:49 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog (#2154). commit 425ef9e97a32a892630a6c9aca414a1df19401ce Merge: 3465c7499 c6214ec15 Author: Alan Garny Date: Tue Sep 3 11:20:00 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 (closes #2147). commit c6214ec1589f715a70621170d196cd8371b1edda Author: Alan Garny Date: Tue Sep 3 10:59:12 2019 +1200 Revert "Only build LLVM+Clang." This reverts commit 7dc102ac1f1882cd21649f72f5b701412b91f800. commit c1db926578efe3af51119c43fbddaaab8de4999a Author: Alan Garny Date: Tue Sep 3 10:57:13 2019 +1200 LLVM+Clang: binaries for version 8.0.1 (#2147). commit 40564a739964e6aba57f75ed6904a074ce1375f1 Author: Alan Garny Date: Tue Sep 3 09:26:37 2019 +1200 Slight update to our downloads page (#2147). commit 9199e2bd6abb6025e5e32c4abe86b4e2930703a5 Author: Alan Garny Date: Mon Sep 2 16:13:56 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 (#2147). commit 7dc102ac1f1882cd21649f72f5b701412b91f800 Author: Alan Garny Date: Mon Sep 2 16:13:07 2019 +1200 Only build LLVM+Clang. commit 3465c74990df6d98079bb36f6676ed60a60ec628 Merge: 4fcf1e5ac 481175ffd Author: Alan Garny Date: Mon Sep 2 15:24:23 2019 +1200 libgit2: upgraded to version 0.28.3 (closes #2148). commit 481175ffd129bc9f2dacd4827c432b342502a315 Author: Alan Garny Date: Mon Sep 2 15:03:15 2019 +1200 Slight update to our previous snapshots page. commit e1825c513d14ea1d9a225f2353ac91ff904b45b2 Author: Alan Garny Date: Mon Sep 2 15:01:32 2019 +1200 Slight update to our downloads page (#2148). commit 384f24b7c700beac08d4c3fd3adf0b0be479e25e Merge: 9ea124627 4fcf1e5ac Author: Alan Garny Date: Mon Sep 2 15:00:13 2019 +1200 Merge branch '\''master'\'' into issue2148. commit 9ea124627bcd41a6bdce657c471df260e323a722 Author: Alan Garny Date: Mon Sep 2 14:57:35 2019 +1200 Revert "Only build libgit2." This reverts commit b49218831835512cca4315ff25a6a475fe10a6ff. commit 885eb8a458f97d74fe0743b4044f682775a1337d Author: Alan Garny Date: Mon Sep 2 14:56:55 2019 +1200 libgit2: binaries for version 0.28.3 (#2148). commit 86a20c9d284851a8afec721aef876b3564d44834 Author: Alan Garny Date: Mon Sep 2 14:48:56 2019 +1200 libgit2: upgraded to version 0.28.3 (#2148). commit b49218831835512cca4315ff25a6a475fe10a6ff Author: Alan Garny Date: Mon Sep 2 14:48:43 2019 +1200 Only build libgit2. commit 4fcf1e5ac820b524b85ffc476ac3e6f40487df01 Merge: e28de3dc9 c158c9de7 Author: Alan Garny Date: Mon Sep 2 14:38:55 2019 +1200 Mesa: upgraded to version 19.1.5 (closes #2149). commit c158c9de75390b79ac34f05a298346ab9d3ce15a Author: Alan Garny Date: Mon Sep 2 14:02:10 2019 +1200 Slight updates to our downloads pages (#2149). commit 1dbc5bc82b451854061a420a7fd7e4acb8edd2de Author: Alan Garny Date: Mon Sep 2 13:57:52 2019 +1200 Mesa: binary for version 19.1.5 (#2149). commit 1492ca57b176a1664463cc08c8a7ac4a8d10835a Author: Alan Garny Date: Mon Sep 2 13:57:22 2019 +1200 Revert "Only build the Mesa library." This reverts commit 45060622b2df46b35bffb11a46d7e22055ade35c. commit 45060622b2df46b35bffb11a46d7e22055ade35c Author: Alan Garny Date: Mon Sep 2 13:53:27 2019 +1200 Only build the Mesa library. commit 67e914c73188ed5c951422d5fc0d7b980859c567 Author: Alan Garny Date: Mon Sep 2 13:52:29 2019 +1200 Mesa: upgraded to version 19.1.5 (#2149). commit e4392b597b4a56cd3f3cb1d67aa49c757b3806df Author: David Brooks Date: Thu Aug 22 17:41:51 2019 +1200 Update pre-built PythonPackages plugin for Windows. commit 8cdf652d6e3ac9bea468c8037bdc4c3a42fc54e4 Author: David Brooks Date: Thu Aug 22 15:53:23 2019 +1200 Make sure we install into the plugin'\''s `site-packages` directory. commit ea34e38a010a0e7b121f268634e34032ede1eceb Author: David Brooks Date: Thu Aug 22 15:52:37 2019 +1200 Use the top-level `ext` directory to build packages. commit 7afffe1745e971a51f3df33142894f2dcb570041 Author: David Brooks Date: Thu Aug 22 15:52:01 2019 +1200 Directly clean/make `site-packages` directory using CMake'\''s `file` command (using the external command under Windows'\'' doesn'\''t always work). commit 1815f82b6f56a767d6c52ddd40be4a5e9ec7ff31 Author: David Brooks Date: Thu Aug 22 15:50:08 2019 +1200 Remove unused code. commit 8d9ac403af9e7f425aeeea133c206e6fb3491609 Author: David Brooks Date: Thu Aug 22 14:11:11 2019 +1200 Install `pip` only when building the Python packages plugin. This makes sure we are using our version patched for Windows (#dbrnz/opencor/issues/29). commit 12c84ef33d564e12de54bfd4c63b0a921733294e Author: David Brooks Date: Thu Aug 22 14:07:24 2019 +1200 We renamed our PythonQt repository so make sure this snapshot uses the old version. commit e33c830494750a94326e326146b8b5449512530c Author: David Brooks Date: Thu Dec 6 20:03:43 2018 +1300 Python: tidy up C++ code. commit ac9578ec5c7640b26caff85bcd4acda85fcac4e4 Merge: 1d5c28fe4 e28de3dc9 Author: David Brooks Date: Sat Jul 27 10:13:48 2019 -0700 Merge branch '\''master'\'' into pythonplugin commit e28de3dc95fec03318f0d0a1ef226eaf2fbf98c8 Merge: 2221ca317 0f4f2d6f6 Author: Alan Garny Date: Fri Jul 19 11:07:51 2019 +0200 New snapshot. commit 0f4f2d6f6400de091836e5fd23f2191f5b4e5d99 Author: Alan Garny Date: Fri Jul 19 10:43:16 2019 +0200 New snapshot. commit 2221ca317f8b66c28c8799b8bbb31ed1a78f0fa6 Merge: 0bef1c058 50c5427b3 Author: Alan Garny Date: Fri Jul 19 10:41:25 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables (closes #2139). commit 50c5427b3e2c78fe8efe063686a7d041ea580da2 Author: Alan Garny Date: Fri Jul 19 10:17:51 2019 +0200 Slight updates to our what is new and downloads pages (#2139). commit 8916b0dd3f8c272cbf79fd2b56c687db6accfed5 Author: Alan Garny Date: Fri Jul 19 10:14:38 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables (#2139). commit 0bef1c058d4051bbe7b51b70e3dc259290224be9 Merge: a446104ec 72d291c85 Author: Alan Garny Date: Fri Jul 19 07:30:58 2019 +0200 OpenSSL: upgraded to version 1.1.1 LTS (#1801). @dbrnz, as you can see, we were finally (!!) able to upgrade to OpenSSL 1.1.1. We had no choice since we were having TLS initialisation issues on Windows, probably due to Qt 5.12.4 now relying on OpenSSL 1.1.1 while we were using OpenSSL 1.0.2. Indeed, although we use our own copy of OpenSSL, I guess there are some aspects of Qt that we use that rely on whatever version of OpenSSL that Qt uses. Anyway, it all seems to be working fine now, i.e. no TLS initialisation error anymore. commit 72d291c85a2407ffaada71399406eafa9d6d3be3 Author: Alan Garny Date: Fri Jul 19 00:10:32 2019 +0200 Slight update to our downloads page (#1801). commit d025cdc3e31940d6f05003f6cb252876eaea05e9 Author: Alan Garny Date: Thu Jul 18 23:56:51 2019 +0200 Updated the libgit2 binaries now that we use OpenSSL 1.1.1c (#1801). commit 7e78e670743978e0382d902c762cd2b5971dcd21 Author: Alan Garny Date: Thu Jul 18 23:56:25 2019 +0200 OpenSSL: binaries for version 1.1.1c (#1801). commit ca18468ab1d2bc85cf5c95b439312d379597fb22 Author: Alan Garny Date: Thu Jul 18 23:40:34 2019 +0200 Revert "Build libgit2 and OpenSSL (#1801)." This reverts commit bf7714b007141829afb77abf186587a9f79e3f12. commit 01dafe26078145bcda128d0452436824d9424aa6 Merge: bf7714b00 a446104ec Author: Alan Garny Date: Thu Jul 18 23:02:50 2019 +0200 Merge branch '\''master'\'' into issue1801. commit a446104ecf131523b3ab13ea52c588b37c22e0d7 Merge: c06a366c2 a98905559 Author: Alan Garny Date: Thu Jul 18 23:02:07 2019 +0200 Make sure that we have a view before trying to import a file using OpenCOR'\''s URI scheme (closes #2140). commit a989055598e6437997f2cd6ad0bc356a686defc4 Author: Alan Garny Date: Thu Jul 18 22:39:48 2019 +0200 Slight updates to our downloads pages (#2140). commit de37455882d74ec06eff63bd8a7d2e2efda6cbd5 Author: Alan Garny Date: Thu Jul 18 22:35:37 2019 +0200 Make sure that we have a view before trying to import a file (#2140). commit 7f84de2e2f23a19443d124364b87c7d9970f914a Author: Alan Garny Date: Thu Jul 18 22:34:10 2019 +0200 Some minor cleaning up. commit 81f99029837cbef7022c371e6b5669eec47ada06 Author: Alan Garny Date: Thu Jul 18 22:33:21 2019 +0200 Some minor cleaning up. commit 26250713e49c1c11ccee6640d54e65cd10cde5cb Author: Alan Garny Date: Thu Jul 18 22:33:13 2019 +0200 Some minor cleaning up. commit bf7714b007141829afb77abf186587a9f79e3f12 Author: Alan Garny Date: Thu Jul 18 15:43:58 2019 +0200 Build libgit2 and OpenSSL (#1801). commit 946b9bab7a18ab87070f072fbdd4e0d4feb88cf4 Author: Alan Garny Date: Thu Jul 18 15:39:07 2019 +0200 OpenSSL: upgraded to version 1.1.1c (#1801). commit 7d86a1c5b0cd0ab59d7923ded904588012cd56c8 Merge: 27ef2ecc6 c06a366c2 Author: Alan Garny Date: Fri Jun 28 11:15:01 2019 +1200 Merge branch '\''master'\'' into issue1801. commit 27ef2ecc6e2a954524b9a9f61bca1f531efb97e4 Author: Alan Garny Date: Fri Jun 28 11:13:43 2019 +1200 Merge branch '\''master'\'' into issue1801. commit c06a366c2f1e691233f4b027a57a0f11fa316b50 Merge: ef7a9d69e 9b9fc1e17 Author: Alan Garny Date: Thu Jun 27 19:09:22 2019 +1200 New snapshot. commit 9b9fc1e17ded8007d99ca7c5547b4e01a67b78a3 Author: Alan Garny Date: Thu Jun 27 18:32:36 2019 +1200 New snapshot. commit ef7a9d69e1549297371e183493c87f11d981c9f8 Merge: ebcba3b58 3d94e5501 Author: Alan Garny Date: Thu Jun 27 18:31:37 2019 +1200 QScintilla: upgraded to version 2.11.2 (closes #2131). commit 3d94e5501cac476955803cf6d3a8910496ffe774 Author: Alan Garny Date: Thu Jun 27 18:10:45 2019 +1200 Slight update to our downloads page (#2131). commit e3c32b328d11b91487edebc2912fc9d774d3425e Author: Alan Garny Date: Thu Jun 27 18:09:31 2019 +1200 Revert "Only build QScintilla (#2131)." This reverts commit 65918833cb4ed7fe16c18072c7601474bb39ff08. commit be31b1b45e56a922bdaa5902c59679a93cba3569 Author: Alan Garny Date: Thu Jun 27 18:08:35 2019 +1200 libgit2: binaries for version 2.11.2 (#2131). commit 622e5573a0bf05152c6ef31b1350c75b313039f6 Merge: 6d739dab4 ebcba3b58 Author: Alan Garny Date: Thu Jun 27 17:52:54 2019 +1200 Merge branch '\''master'\'' into issue2131. commit ebcba3b588cc2d694e02b7e07024ea192abda6cc Merge: 3d90d0908 d19a7d9ba Author: Alan Garny Date: Thu Jun 27 17:52:04 2019 +1200 libgit2: upgraded to version 0.28.2 (closes #2123). commit 6d739dab4bd7a44919619b2eefdf9649aa0c2295 Author: Alan Garny Date: Thu Jun 27 17:44:26 2019 +1200 QScintilla: upgraded to version 2.11.2 (#2131). commit 65918833cb4ed7fe16c18072c7601474bb39ff08 Author: Alan Garny Date: Thu Jun 27 17:43:14 2019 +1200 Only build QScintilla (#2131). commit d19a7d9baa04998631134186834bd1a0a2d65b22 Author: Alan Garny Date: Thu Jun 27 17:33:09 2019 +1200 Slight update to our downloads page (#2123). commit 67889b82994fee758d67de6dedb8930a1c80cb5f Author: Alan Garny Date: Thu Jun 27 17:31:48 2019 +1200 libgit2: binaries for version 0.28.2 (#2123). commit adb7e6b2602cc778ce6a1cb4527b2600ececb3e3 Author: Alan Garny Date: Thu Jun 27 17:28:43 2019 +1200 Revert "Only build libgit2 (#2123)." This reverts commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e. commit b4ac240e57ab2970d58a7de0d630a141c967989b Author: Alan Garny Date: Thu Jun 27 17:24:08 2019 +1200 libgit2: upgraded to version 0.28.2 (#2123). commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e Author: Alan Garny Date: Thu Jun 27 17:22:49 2019 +1200 Only build libgit2 (#2123). commit 3d90d09083440f519395d182c6d49326c9384c48 Merge: 377b532b8 321e1f2e6 Author: Alan Garny Date: Thu Jun 27 17:02:21 2019 +1200 Mesa: upgraded to version 19.1.1 (closes #2124). commit 321e1f2e6229be40887bd7e64715176626f074df Author: Alan Garny Date: Thu Jun 27 16:20:46 2019 +1200 Slight update to our downloads page (#2124). commit 318456cf84e857edc43f50af1907ae83cb5a4258 Author: Alan Garny Date: Thu Jun 27 16:18:35 2019 +1200 Revert "Only build Mesa (#2122)." This reverts commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec. commit 218b177d00efeb9630142754d7504e988739d7e8 Author: Alan Garny Date: Thu Jun 27 16:18:27 2019 +1200 Mesa: binaries for version 19.1.1 (#2124). commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec Author: Alan Garny Date: Thu Jun 27 15:53:11 2019 +1200 Only build Mesa (#2122). commit d440a5e6de9651826d4b3d32b6d18a6bfffaa36b Author: Alan Garny Date: Thu Jun 27 15:52:54 2019 +1200 Mesa: ugpraded to version 19.1.1 (#2122). commit 377b532b81ea5ea83fa16c7c3e82565691c6c0b5 Merge: d617acde3 daa49a0a2 Author: Alan Garny Date: Thu Jun 27 15:44:40 2019 +1200 jQuery: upgraded to version 3.4.1 (closes #2122). commit daa49a0a2fef46219595f0bb66b7b7f10d38bc36 Author: Alan Garny Date: Thu Jun 27 15:19:44 2019 +1200 Slight update to our downloads page (#2122). commit 2a051661e052e45ae3280dec62655355bdcf85f4 Author: Alan Garny Date: Thu Jun 27 15:18:03 2019 +1200 jQuery: upgraded to version 3.4.1 (#2122). commit d617acde3b1a037ddf8004889674cead083b5f5a Merge: 12ab03f98 c62b3001d Author: Alan Garny Date: Thu Jun 27 14:24:40 2019 +1200 CMake: some minor cleaning up. commit c62b3001d9d9148a532a21d51b26f23b9eda499b Author: Alan Garny Date: Thu Jun 27 13:58:55 2019 +1200 CMake: some minor cleaning up. commit 2aa173facaceb38e9b48c54e3407d5f2b69fcd61 Author: Alan Garny Date: Thu Jun 27 12:54:19 2019 +1200 CMake: some minor cleaning up. commit cbe90a0051d8f7aca646114107c14a4d991cffa6 Author: Alan Garny Date: Thu Jun 27 12:45:49 2019 +1200 CMake: some minor cleaning up. commit 12ab03f9811251ac130e83fb2185c519fd01c39c Merge: a9143f522 0d36ea162 Author: Alan Garny Date: Thu Jun 27 11:29:11 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction (closes #2125). commit 0d36ea1626749b721ac5c8a14641e92628161999 Author: Alan Garny Date: Thu Jun 27 10:55:00 2019 +1200 Slight updates to our downloads and what is new pages (#2125). commit cdb83fcc687757e4bb8ce47891b169d428ee44b7 Author: Alan Garny Date: Thu Jun 27 10:47:52 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction (#2125). commit a9143f5223401f9c17b4f164ddda1e8cd104e075 Merge: d66ab0482 aee8e4749 Author: Alan Garny Date: Thu Jun 27 09:00:38 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit aee8e474905e3772cdd89b2e4eae34e3ea170a44 Author: Alan Garny Date: Thu Jun 27 08:38:22 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (opencor#2126). commit d66ab04829c833aea5224cbc0dc1ba4cc8077952 Merge: f0c5da665 4cdfdf266 Author: Alan Garny Date: Thu Jun 27 08:33:12 2019 +1200 Clang-Tidy: include OpenCOR'\''s header files (closes #2120). commit 4cdfdf2668cfe813bbac9f0a126226ee00a7864a Author: Alan Garny Date: Wed Jun 26 18:12:19 2019 +1200 Clang-Tidy: include OpenCOR'\''s header files (#2120). commit 6c336f7c7457727e8783d3dcaec81fc79bb42ff6 Author: Alan Garny Date: Wed Jun 26 16:12:21 2019 +1200 Some minor cleaning up. commit 031cc22f62d7c5a297ca39f4b533a7a2bd40d208 Author: Alan Garny Date: Wed Jun 26 16:05:33 2019 +1200 Make Clang-Tidy happy (#2120). commit b8bc1002e3432c2a4af5015e8e171d503701534a Author: Alan Garny Date: Wed Jun 26 16:01:49 2019 +1200 Make Clang-Tidy happy (#2120). commit a2430860884e8b3b6012dc13011d80b54e4c749e Author: Alan Garny Date: Wed Jun 26 15:57:42 2019 +1200 Make Clang-Tidy happy (#2120). commit 25172b185d17f0ff89bca87cbd4a8d4abf06036c Author: Alan Garny Date: Wed Jun 26 15:56:09 2019 +1200 Make Clang-Tidy happy (#2120). commit c752c88e61f0786685a232ebae13ae6ffaa1d5e8 Author: Alan Garny Date: Wed Jun 26 15:50:51 2019 +1200 Make Clang-Tidy happy (#2120). commit 777f9f07dbeef6b7837f97848ed249f2992c5b36 Author: Alan Garny Date: Wed Jun 26 15:48:20 2019 +1200 Make Clang-Tidy happy (#2120). commit 6801c40ad1d823b78b6c9ffce7e79e01c4bfc6ef Author: Alan Garny Date: Wed Jun 26 15:46:11 2019 +1200 Make Clang-Tidy happy (#2120). commit 5e95feaf032051fe6596eb6b58d974c667bb7148 Author: Alan Garny Date: Wed Jun 26 15:39:58 2019 +1200 Make Clang-Tidy happy (#2120). commit 3fe092f28de2d7ef541269c7cb8b70b35882e902 Author: Alan Garny Date: Wed Jun 26 15:37:57 2019 +1200 Make Clang-Tidy happy (#2120). commit e30eda96ea835c1377993eed202a1fdaf4ef78f5 Author: Alan Garny Date: Wed Jun 26 15:31:55 2019 +1200 Make Clang-Tidy happy (#2120). commit efc77e8c11dfaa4562f5af6e4c1e63fd0acffd84 Author: Alan Garny Date: Wed Jun 26 15:28:55 2019 +1200 Some minor cleaning up. commit 16b9bf077b86cc8c7c3af64487e67dbed0bb8539 Author: Alan Garny Date: Wed Jun 26 15:28:46 2019 +1200 Make Clang-Tidy happy (#2120). commit 4f2895292f22cf7c936c279aadeba4c9974058bb Author: Alan Garny Date: Wed Jun 26 14:17:24 2019 +1200 Make Clang-Tidy happy (#2120). Reverting a few things... commit f4587e0d4897012d3957c718a02c5f42a50ed0d1 Author: Alan Garny Date: Wed Jun 26 12:05:22 2019 +1200 Make Clang-Tidy happy (#2120). commit bd2760583a17c6a8f006b372293a000fd6c0d48f Author: Alan Garny Date: Wed Jun 26 11:31:41 2019 +1200 Make Clang-Tidy happy (#2120). commit 5808ba3c0853bb02cc6176d0dcb35850e2f3d965 Author: Alan Garny Date: Wed Jun 26 11:23:59 2019 +1200 Make Clang-Tidy happy (#2120). commit d59678fc51f323e8f74facf5c27dead246e5fb67 Author: Alan Garny Date: Wed Jun 26 11:20:11 2019 +1200 Make Clang-Tidy happy (#2120). commit 3281bd429d11c844e9fb56c8e4bf7946287bf0f8 Author: Alan Garny Date: Wed Jun 26 11:14:55 2019 +1200 Make Clang-Tidy happy (#2120). commit 1d3e262d1f3a0c8241edea6ab64f45fede5d0dfb Author: Alan Garny Date: Wed Jun 26 11:13:35 2019 +1200 Make Clang-Tidy happy (#2120). commit ba129b35c3cd1631b4b14db03a5b4d983958731f Merge: ad36bfdc0 f0c5da665 Author: Alan Garny Date: Wed Jun 26 10:49:09 2019 +1200 Merge branch '\''master'\'' into issue2120. commit f0c5da66510334033c0e7bbdea027367f66be5e3 Merge: 4ddf28c53 8738c816a Author: Alan Garny Date: Wed Jun 26 10:46:06 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit 8738c816a14c74d8c269a4d0a29d17b1bc62261b Author: Alan Garny Date: Wed Jun 26 10:27:58 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit f517d3d7cd20a6cd11fe044c27333d39926786ab Author: Alan Garny Date: Wed Jun 26 09:55:05 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit cf7311d13d32482de4468bad2823ce8faefa819f Author: Alan Garny Date: Wed Jun 26 09:53:48 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit ad36bfdc00e28986c6259535b6ca1ce4df23f1a7 Merge: ef1d2e088 4ddf28c53 Author: Alan Garny Date: Tue Jun 25 18:38:41 2019 +1200 Merge branch '\''master'\'' into issue2120. commit ef1d2e088ad04f1673dc03850f8e000af1ee2148 Author: Alan Garny Date: Tue Jun 25 18:36:18 2019 +1200 Merge branch '\''master'\'' into issue2120. commit 4ddf28c536897263f45275da4051559cc1f3d3c9 Merge: 5ceae0fe8 5c445b0e3 Author: Alan Garny Date: Tue Jun 25 18:25:35 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit 5c445b0e34d7673c4df927c242075950426b8639 Author: Alan Garny Date: Tue Jun 25 17:47:34 2019 +1200 Slight update to our downloads page (#2126). commit 2c459d658e2cf4ae514e46f24aadb1302459f666 Author: Alan Garny Date: Tue Jun 25 17:38:03 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit 6d589d5633fdb30111072021aee40515da47c183 Author: Alan Garny Date: Tue Jun 25 17:18:05 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit cbda8f16d6bc3143834d286d8d92f2e74e77cdf8 Author: Alan Garny Date: Tue Jun 25 16:41:59 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit e1dc04e9c3ce3cfd4590ff047707acc46ba75faa Author: Alan Garny Date: Tue Jun 25 16:34:34 2019 +1200 Clang-Tidy: moved a couple of .clang-tidy files to a better location. commit 46cf0267e9ce940a23a4579cfd59fcef653b5357 Author: Alan Garny Date: Tue Jun 25 16:24:57 2019 +1200 Some minor cleaning up. commit 2b7624c7e74fd4c4794a5f73f8de656978f5614a Author: Alan Garny Date: Tue Jun 25 16:22:13 2019 +1200 Some minor cleaning up. commit ecc27a32898ca0ed4315c33b2d2fcf36101d139d Author: Alan Garny Date: Tue Jun 25 16:19:19 2019 +1200 Some minor cleaning up. commit e57b82a7a0f282f0d29e21eb402381850f995d4d Author: Alan Garny Date: Tue Jun 25 12:55:17 2019 +1200 Clang-Tidy: only show issues for our header files (#2120). commit 6392d82f53177ff5ab7cbcc2d25506c818ce0eb6 Author: Alan Garny Date: Tue Jun 25 10:37:25 2019 +1200 Clang-Tidy: only show issues for our header files (#2120). commit 3c4f384a082242296c7e5636d30d8bd88edb002b Author: Alan Garny Date: Tue Jun 25 09:55:38 2019 +1200 Make Clang-Tidy happy (#2120). commit 12526bb90a5e15f9f8cc176d9a6ecfcae516196e Author: Alan Garny Date: Tue Jun 25 09:49:48 2019 +1200 Make Clang-Tidy happy (#2120). commit 835369d7cddfdf560029477c74a148bf9e23e913 Author: Alan Garny Date: Tue Jun 25 09:43:26 2019 +1200 Make Clang-Tidy happy (#2120). commit 2789bbfc40c0d5fa904dc32e5ac99fa3494ba500 Author: Alan Garny Date: Tue Jun 25 09:40:49 2019 +1200 Make Clang-Tidy happy (#2120). commit f8b484a2a070aa53950a25f923b4966e1d87a3e1 Author: Alan Garny Date: Tue Jun 25 09:34:52 2019 +1200 Make Clang-Tidy happy (#2120). commit a65dfc285fe65ae59a5ca644bcef78b8a255a2df Author: Alan Garny Date: Tue Jun 25 09:25:41 2019 +1200 Make Clang-Tidy happy (#2120). commit ee4f7a52c451e5f28fcbf0eb34522b3547e9eb31 Author: Alan Garny Date: Tue Jun 25 09:22:44 2019 +1200 Make Clang-Tidy happy (#2120). commit fa338cea8f2c9c37fc8a0c6167278b4653a294a1 Author: Alan Garny Date: Tue Jun 25 09:15:59 2019 +1200 Make Clang-Tidy happy (#2120). commit 34043978f8ae5a06c005da9a5003966952cbffd2 Author: Alan Garny Date: Mon Jun 24 13:25:07 2019 +1200 Make Clang-Tidy happy (#2120). commit 18f56f2d8d5ab28270b83e4f3a05993bf14477c5 Author: Alan Garny Date: Mon Jun 24 12:52:22 2019 +1200 Make Clang-Tidy happy (#2120). commit 23da1da835e45ad419b75e2d66f82813f61c863c Author: Alan Garny Date: Mon Jun 24 12:28:46 2019 +1200 Make Clang-Tidy happy (#2120). commit 37e6447ff910c78a9326e42b14d3828f40ba766f Author: Alan Garny Date: Mon Jun 24 11:56:25 2019 +1200 Make Clang-Tidy happy (#2120). commit e9707afdf46afa5f16a91513ed54ac39b1609aca Author: Alan Garny Date: Mon Jun 24 11:52:54 2019 +1200 Make Clang-Tidy happy (#2120). commit 230fd914977a0398b33ea7daf38d743e31b5fee4 Author: Alan Garny Date: Mon Jun 24 11:48:52 2019 +1200 Clang-Tidy: we actually need a .clang-tidy file here and there (#2120). Indeed, to create a .clang-tidy file in our build folder, and to have src/3rdparty/QtSingleApplication/.clang-tidy and src/plugins/support/ZIPSupport/.clang-tidy is needed if we want to prevent those folders from being checked by Clang-Tidy. commit 2510f64419ebdf13605ae0befd5df621e19fb4e4 Author: Alan Garny Date: Mon Jun 24 11:45:02 2019 +1200 Make Clang-Tidy happy (#2120). commit e1f129135bbe2a4e7430712a6e78eca0826a70cc Author: Alan Garny Date: Mon Jun 24 10:48:22 2019 +1200 Clang-Tidy: do everything through CMake (#2120). Indeed, we can'\''t use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders (e.g. build, ext). So, instead, we "hardcode" the path for the headers that we want to see analysed. commit cf99e5499933d8e79e830f542c129f7a2765da6f Author: Alan Garny Date: Mon Jun 24 09:40:02 2019 +1200 scripts/genericclean: don'\''t need to remove build/.clang-tidy anymore (#2120). Since we don'\''t create a .clang-tidy file anymore. commit 23f144582ab0d4010c6438c77a85339cb9b693d5 Author: Alan Garny Date: Mon Jun 24 09:39:03 2019 +1200 Clang-Tidy: do everything through CMake (#2120). Indeed, we can'\''t use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders (e.g. build, ext). So, instead, we "hardcode" the path for the headers that we want to see analysed. commit ecdc8d063a3526e4906f6f446ab11aad903a85b9 Author: Alan Garny Date: Mon Jun 24 09:36:30 2019 +1200 Slight update to our .gitignore file (#2120). Now that we put our external libraries: everything is now under [OpenCOR]/ext. commit f0c12ee851c7d9eb30abe78589c3863e2c3a7bf4 Author: Alan Garny Date: Sat Jun 22 11:44:55 2019 +1200 libSEDML: use the "official" libSBML and libNuML variables. commit 36f2d92b3a2d9870dfad0b2bb5ce9eb0ceaadba1 Author: Alan Garny Date: Sat Jun 22 11:44:38 2019 +1200 libNuML: use the "official" libSBML variables. commit 69363a39a276bfb8db2f695c982ac84aef32c8c6 Author: Alan Garny Date: Sat Jun 22 11:44:11 2019 +1200 libgit2: make sure that it depends on our OpenSSL and zlib packages. commit e68a713425e868e3cfdc10d1f4b7f8620ec71515 Author: Alan Garny Date: Sat Jun 22 11:43:41 2019 +1200 libSBML: make sure that it depends on our zlib package. commit 3938138ad10e2bfd78fbed62be7cd7cdd5c2671d Author: Alan Garny Date: Sat Jun 22 11:43:14 2019 +1200 Graph panels: we don'\''t need libSEDML (!!). commit fd82f407db9d98edc43f4d492dfd512a8a99967f Author: Alan Garny Date: Sat Jun 22 11:42:49 2019 +1200 Minor reordering of plugins. commit 16fb7e4ec785eb319f4cb529c692e0bbe9458cf5 Author: Alan Garny Date: Fri Jun 21 20:05:04 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). commit 98adbdcca8ae07027a4d4430edef6b6e6a6c1dbf Author: Alan Garny Date: Fri Jun 21 19:26:35 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). commit 9d5f849ac91a40fc029b83be553604533cb6e9a3 Author: Alan Garny Date: Fri Jun 21 19:06:47 2019 +1200 Slight update to our genericclean scripts (#2120). commit e19f3496a58f7e7fa82df75efc86a77b43b70333 Author: Alan Garny Date: Fri Jun 21 16:38:55 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). We used to have things under, for example, [OpenCOR]/src/plugins/thirdParty/SUNDIALS/ext, but this makes things unnecessarily complicated for Clang-Tidy. commit a388605b3e3f848ee59e41a757f0025f0496821d Author: Alan Garny Date: Fri Jun 21 14:45:27 2019 +1200 Some minor cleaning up. commit 54b5ba2aaba0592e242a947c4d1396a058f07221 Author: Alan Garny Date: Fri Jun 21 10:46:57 2019 +1200 Some minor cleaning up. commit e7bde0a391815a37bbe2be940177f1d41fc5eaa2 Author: Alan Garny Date: Fri Jun 21 10:26:03 2019 +1200 Moved a couple of .clang-tidy files. commit 5ceae0fe8d9ea6b23782b79ef6cf4d9d0d2e0413 Merge: 10a189bf6 ecd21bca5 Author: Alan Garny Date: Tue Jun 18 15:29:47 2019 +1200 Simulation Experiment view: Fixed an issue with the plotting of simulation data being potentially (very) choppy (closes #2118). commit ecd21bca5cb9862a004f130c9683d286707d9705 Author: Alan Garny Date: Tue Jun 18 15:02:45 2019 +1200 Slight update to our downloads page (#2118). commit 1a8f58e7f5dd4af1e9c12b380045ad247b0e6e45 Author: Alan Garny Date: Tue Jun 18 14:59:23 2019 +1200 Simulation Experiment view: fixed an issue with the plotting potentially being (very) choppy (#2118). commit 10a189bf6b1f5d0f4388261e57d95238426d1512 Merge: f784b3726 fde4ab2e8 Author: Alan Garny Date: Tue Jun 18 14:43:28 2019 +1200 Simulation Experiment view: properly disable the `Reset All Model Parameters` button (closes #2116). commit fde4ab2e8c6ed1f6c7f07b380b1f39c12c867979 Author: Alan Garny Date: Tue Jun 18 14:06:06 2019 +1200 Slight updates to our downloads pages (#2116). commit 23d9f7e86312db0daeba97c74e6343dbb7b8584a Author: Alan Garny Date: Tue Jun 18 14:02:11 2019 +1200 Simulation Experiment view: properly reset the `Reset All Model Parameters` button (#2116). commit f784b37269948afd2730af737e2fad8bf06e8917 Merge: d68bbf5a9 c3c6bc1df Author: Alan Garny Date: Tue Jun 18 14:00:33 2019 +1200 Make Qt 5.12.4 LTS happy. commit c3c6bc1df557f30916bb09d1ea6c452a4c0ee8a1 Author: Alan Garny Date: Tue Jun 18 13:16:57 2019 +1200 Make Qt 5.12.4 LTS happy. commit d68bbf5a94407c96a535e41bf49428140030ef9c Merge: 613221b83 ca7bfd00e Author: Alan Garny Date: Mon Jun 17 19:19:52 2019 +1200 New snapshot. commit ca7bfd00eb33443f1782590a896d4f92a03a5f2f Author: Alan Garny Date: Mon Jun 17 19:01:44 2019 +1200 New snapshot. commit 613221b8332c94a4fbd3d94fe70d2d50b14e33af Merge: 4fd5586a3 ef101afeb Author: Alan Garny Date: Mon Jun 17 19:00:03 2019 +1200 Linux: support Ubuntu 19.04 by shipping libtinfo.so.5 (closes #2075). commit ef101afeb2a948cd6063ee13e4964f1bf503690c Author: Alan Garny Date: Mon Jun 17 18:36:29 2019 +1200 Slight update to our downloads page (#2075). commit 14218b36a6d14b9bbede5b0d94796ec7f6fc9580 Merge: be185066f 4fd5586a3 Author: Alan Garny Date: Mon Jun 17 18:30:21 2019 +1200 Merge branch '\''master'\'' into issue2075. commit 4fd5586a3ab0cdacd9a01ab0c97f048d512cfbcd Merge: 6b152d396 b3542b08e Author: Alan Garny Date: Mon Jun 17 18:29:43 2019 +1200 OpenSSL: upgraded to version 1.0.2s (closes #2105). commit be185066f51b41de34a15d1d99c2f157c3847046 Author: Alan Garny Date: Mon Jun 17 17:28:48 2019 +1200 Linux: ship libtinfo.so.5 (#2075). commit b3542b08ee17e125978c3e2339ca6e0e2a995a65 Author: Alan Garny Date: Mon Jun 17 16:12:07 2019 +1200 Revert "Only build the OpenSSL package (#2105)." This reverts commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752. commit df4ec55d87249a5f3189614723c9ea4f1e92f86b Author: Alan Garny Date: Mon Jun 17 16:11:21 2019 +1200 Slight update to our downloads page (#2105). commit 5c9b2ab76074b161e5c7b3d23f2bdcc01fc5205e Author: Alan Garny Date: Mon Jun 17 16:11:10 2019 +1200 OpenSSL: binaries for version 1.0.2s (#2105). commit 6a93a87356e1a7d730f146a96700e73f374375d8 Author: Alan Garny Date: Mon Jun 17 15:48:18 2019 +1200 OpenSSL: upgraded to version 1.0.2s (#2105). commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752 Author: Alan Garny Date: Mon Jun 17 15:47:40 2019 +1200 Only build the OpenSSL package (#2105). commit 6b152d3969fd190b1f91f73a70ff93053a0a1cc5 Merge: cc0b9636d 952ba71a6 Author: Alan Garny Date: Fri Jun 14 10:10:52 2019 +1200 CellML support: improved the validation reporting of models with imports (#2109). commit 952ba71a667c017f527ada963fdccb18e47caf09 Author: Alan Garny Date: Fri Jun 14 09:41:05 2019 +1200 CellML support: improved the validation reporting of models with imports (#2109). commit cc0b9636d4c4391038663a552fe5856a668edd00 Merge: 0fd89bfc7 3cbc7051a Author: Alan Garny Date: Thu Jun 13 19:02:27 2019 +1200 CellML support: improved the validation reporting of models with imports (closes #2109). commit 3cbc7051aa8acb2cad2275e06a273b4f1ad3e7c4 Author: Alan Garny Date: Thu Jun 13 18:35:44 2019 +1200 Slight update to our downloads page (#2109). commit facd2c458122056da4a1032e4823f8beb1b0ba99 Author: Alan Garny Date: Thu Jun 13 18:27:46 2019 +1200 URI scheme: fixed a small problem with our new EditingView.setCursorPosition command (#2109). commit a33d588c3b51bc1a57840d81b6c1a6b4dcf7b1dd Author: Alan Garny Date: Thu Jun 13 18:12:08 2019 +1200 Some minor cleaning up. commit c1d554657e488f0de6b7d78eca926e56046077c5 Author: Alan Garny Date: Thu Jun 13 18:06:08 2019 +1200 CellML support: improve validation reporting of models with imports (#2109). commit a63fef61f3e5025e644009c5d068090d3b151fe8 Author: Alan Garny Date: Thu Jun 13 18:03:46 2019 +1200 Core: added a method to retrieve the current view plugin (#2109). commit 769bfc2b18f02f9e914aecbcc2e756c2d1b4af32 Author: Alan Garny Date: Thu Jun 13 16:02:51 2019 +1200 Some minor cleaning up. commit 72c84d0d94e4bc22a838f3d14971dbc969f28892 Author: Alan Garny Date: Thu Jun 13 15:21:01 2019 +1200 CellML support: sort CellML issues by the imported file from which they come (if any) (#2109). commit c314d23c9d133f18e62982816814f3b5d81ed8ff Author: Alan Garny Date: Thu Jun 13 15:20:13 2019 +1200 Raw CellML view: don'\''t mention anymore that an issue may be related to the current CellML file or to one of its (in)directly imported CellML files (#2109). commit ae18d144f4e5dfe4e0134799db3f8d497be99a22 Author: Alan Garny Date: Thu Jun 13 15:18:28 2019 +1200 Some minor cleaning up. commit 883401ca35ef3d179028f3e8c0b5c2f40e6bf80b Author: Alan Garny Date: Thu Jun 13 14:19:32 2019 +1200 CellML support: improve validation reporting by ignoring duplicate issues (#2109). commit 7a8bff9ab536820451cf0b40b8e6da0eddb200b4 Author: Alan Garny Date: Thu Jun 13 14:18:46 2019 +1200 Some minor cleaning up. commit 1d5c28fe4da3030e7f0972fbd128c3b593a8e102 Author: David Brooks Date: Tue Jun 11 16:39:04 2019 +1200 Python: fix wrong return value from `PythonRunScriptPlugin::runScript()` when insufficient arguments. commit c2a7f1bd0e55e78b784a8c6e4058fd3c080bc9b1 Author: David Brooks Date: Tue Jun 11 16:08:35 2019 +1200 Python: minor code tidy. commit bf5ea2fbe86422bdceab183561914df659afc790 Author: David Brooks Date: Tue Jun 11 16:08:19 2019 +1200 General: return the exit code of a CLI plugin command (#2107). commit a9616ffb5f53eddb36f068e3cdb5bdcdd4a9acf5 Merge: 4478cf51c 0fd89bfc7 Author: David Brooks Date: Tue Jun 11 15:55:52 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 0fd89bfc781d9184c105b30129e0af64248a4d16 Merge: 00c94de6f 1cc03e92c Author: Alan Garny Date: Tue Jun 11 15:40:13 2019 +1200 General: return the exit code of a CLI plugin command (closes #2107). commit 1cc03e92cda6209aacd950407ca69eb5698f233e Author: Alan Garny Date: Tue Jun 11 15:10:56 2019 +1200 Slight updates to our downloads page (#2107). commit fdf7ed1aef5add034b400dcbb5cb97efb5ed6cdd Author: Alan Garny Date: Tue Jun 11 15:07:47 2019 +1200 General: return the exit code of a CLI plugin command (#2107). commit 4478cf51ce7e960b5ac893444d5ef82124051c9e Author: David Brooks Date: Tue Jun 11 13:33:55 2019 +1200 Return `sys.exit()` result code from running CLI Python script (fixes dbrnz/opencor/#27). commit d3aeb0f0edbafde8104367cd922e07fb03c172a9 Merge: 5cda8de15 00c94de6f Author: David Brooks Date: Tue Jun 11 10:11:22 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 00c94de6f84c9c7cccde1b56dc749de7e37448ce Merge: 9f52eab06 e14fe9346 Author: Alan Garny Date: Thu May 30 16:13:53 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit e14fe9346bbee876e8a2ab256a97e5536f7c38ed Author: Alan Garny Date: Thu May 30 15:54:41 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit eefa4157902c08c6b312235a58e840e10f6e2967 Merge: f1e260f9c 9f52eab06 Author: Alan Garny Date: Mon May 27 09:12:53 2019 +1200 Merge branch '\''master'\'' into issue1801. commit 5cda8de15b311ca2ccc77203d377788b3c27466c Author: David Brooks Date: Fri May 24 11:52:13 2019 +1200 Python: minor tidy. commit 9f52eab06f87664f25863131d5a93956d4c5958e Merge: e1904fdd3 05bb52978 Author: Alan Garny Date: Fri May 24 11:52:03 2019 +1200 CMake: improved the building of our documentation (closes #2103). commit 10441fb8acf9546db5d2ccb4f1c2cb2f48dde41e Author: David Brooks Date: Fri May 24 11:17:08 2019 +1200 Python: work on improving solver'\''s interface (#2091). commit 05bb529782641f72f93ed214b0bce632d5346388 Author: Alan Garny Date: Fri May 24 11:13:26 2019 +1200 CMake: improve the building of our documentation (#2103). commit 0759373bb0ac396e02499d3b177e179d98966918 Author: David Brooks Date: Fri May 24 10:22:40 2019 +1200 Minor tidy up. commit ffe7b7586bb426e672c98b7d60352fbddb86f1e4 Author: David Brooks Date: Thu May 23 20:24:14 2019 +1200 General: we no longer need to set `QT_QPA_PLATFORM_PLUGIN_PATH` (#2089). commit e2c056d2331b4251691e69f7f31fca0ba9c4dca4 Author: David Brooks Date: Thu May 23 19:53:11 2019 +1200 Python: enable the ability to set a simulation'\''s solver and set its properties (#2091). commit 6ab9bd4754b9eb1ca30fcb1791f6fc8ffef1add2 Author: David Brooks Date: Thu May 23 19:40:16 2019 +1200 Python: fix minor typo. commit 367d392c9b04f678c5ac1a7341c7bb7834a3ef6d Author: David Brooks Date: Thu May 23 19:28:37 2019 +1200 Python: remove WIP SolverSupport plugin as we don'\''t yet need it. commit 5383ceafd5326ed3971293ea65336d3aaeef612c Merge: 86f780905 e1904fdd3 Author: David Brooks Date: Thu May 23 19:05:48 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit e1904fdd3de3a12027b77c6d6097791e87bfd9d7 Merge: 694a0d624 96cc2cf92 Author: Alan Garny Date: Thu May 23 17:55:38 2019 +1200 Documentation: slight reformatting of our different scripts. commit 96cc2cf929c388d4d6314c0da257b8a0ee69fb6e Author: Alan Garny Date: Thu May 23 17:20:12 2019 +1200 Documentation: slight reformatting of our different scripts. commit 694a0d624c67a926a945a519a08bc99f50ccff5f Merge: 711a827af f2af55ad5 Author: Alan Garny Date: Thu May 23 16:57:12 2019 +1200 New snapshot. commit f2af55ad5824f9b5714222ef1724a1d1dcd2f805 Author: Alan Garny Date: Thu May 23 16:24:43 2019 +1200 New snapshot. commit 711a827afcf705e8dcee69099625cf1c6424a0dd Merge: 2c5063e30 1b1c3e510 Author: Alan Garny Date: Thu May 23 16:22:16 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (closes #2089) and Help window: fixed and issue with a blank page being shown rather than the documentation itself (closes #2099). commit 1b1c3e5109ebba73a68f07608b4d598768d64e99 Author: Alan Garny Date: Thu May 23 15:40:16 2019 +1200 Ubuntu: prevent our binary from being considered as a shared library file on Ubuntu when using Nautilus. commit 404b83232a8a83035bfe319ff8cf4f9b6927bf91 Author: Alan Garny Date: Thu May 23 15:05:08 2019 +1200 Slight update to our downloads page (#2099). commit 598ecc8ddf62ffe65513a64c463190ed2411a8f4 Author: Alan Garny Date: Thu May 23 15:03:50 2019 +1200 Slight update to our downloads page (#2089). commit a3ac89e3ff4189e5c2ec891d095ca59876c60c6a Author: Alan Garny Date: Thu May 23 14:09:48 2019 +1200 CMake: use `CMAKE_AUTORCC`. commit c5f82f3baa5005fa1e1d653b662ec3ab6b5bfd37 Author: Alan Garny Date: Thu May 23 12:27:27 2019 +1200 Some minor cleaning up. commit f37c141c52020fbd6eb7e864b686e7ac5b08ce93 Author: Alan Garny Date: Thu May 23 10:17:16 2019 +1200 Help window: make sure that our user documentation is ready. commit 86f78090548570bb78cda68fc41b70827e7f6e58 Merge: be33eade8 2c5063e30 Author: David Brooks Date: Wed May 22 20:55:37 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 2cb4471a38d9d1e9aa08932e427f2edb16dbb353 Author: Alan Garny Date: Wed May 22 18:54:59 2019 +1200 Help window: make sure that our user documentation is ready. commit f24ad5e970b35a2d9bc5b8374eb01a74168b3ea3 Author: Alan Garny Date: Wed May 22 17:46:43 2019 +1200 CMake: use `CMAKE_AUTORCC`. commit dc722050eaf82e6a5ffb64bae77339e6d13259d4 Author: Alan Garny Date: Wed May 22 15:38:34 2019 +1200 Make Clang-Tidy happy. commit b98c3d05425ed393465b449ca412508c34e69563 Author: Alan Garny Date: Wed May 22 15:25:11 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (#2089). To use QCoreApplication::applicationFilePath() is not good enough, we must use QCoreApplication(pArgC, pArgV).applicationFilePath(). commit 6d91c6a4d7517feba0f121a82975d0787be50e4b Author: Alan Garny Date: Wed May 22 15:07:28 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (#2089). The issue is that during some Clang-Tidy related work, I merged initPluginsPath() and initApplication() together, but that was clearly a (very) bad move! commit 2c5063e30615907a7e7a09b05c126d2bc12441f9 Merge: a26b8bab7 9d62a15bf Author: Alan Garny Date: Wed May 22 10:50:01 2019 +1200 libgit2: new binaries for version 0.28.1. commit 9d62a15bf2c227b1b9d0c84f4222352256a055c7 Author: Alan Garny Date: Wed May 22 10:25:36 2019 +1200 Revert "Only build libgit2." This reverts commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe. commit 56b263dc2dd9fef4538a8b9673cf58e2739002d7 Author: Alan Garny Date: Wed May 22 10:25:17 2019 +1200 libgit2: new binaries for version 0.28.1. commit 14ca0751f7d519280dde8d335bc1f7504dc50b4c Author: Alan Garny Date: Wed May 22 10:21:15 2019 +1200 CMake: increased our minimum version required to 3.14. See the note in issue #2088. commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe Author: Alan Garny Date: Wed May 22 10:13:20 2019 +1200 Only build libgit2. commit be33eade867809c799c4043f9f0e57dcea666cb2 Author: David Brooks Date: Tue May 21 20:29:21 2019 +1200 Add `SolverSupport` plugin (#2091). commit a26b8bab72f6a9dc086c0b2d321d9c2bdfc00698 Merge: 40a29257c 71f9f05ba Author: Alan Garny Date: Tue May 21 18:46:07 2019 +1200 Issue #2088 cleaning up. commit 71f9f05ba2a6f794d6ba6e37d2faef60c250d36b Author: Alan Garny Date: Tue May 21 18:26:05 2019 +1200 Slight update to our downloads page. commit 749f57be676e07f6df12118e36d58fb77676168a Author: Alan Garny Date: Tue May 21 18:20:30 2019 +1200 Some minor cleaning up. commit 40a29257cb36d639af3805f7c4e3814a82d10377 Merge: 0eabce350 fb643c61d Author: Alan Garny Date: Tue May 21 18:19:31 2019 +1200 libgit2: now only references our copy of `zlib` (closes #2088). commit f5fd13e6534974fffaab551187d8573b79f92ddd Merge: 3f7255a9d fb643c61d Author: David Brooks Date: Tue May 21 18:06:31 2019 +1200 Merge branch '\''issue-2088'\'' into pythonplugin commit 3f7255a9d32389a724128d688e33c85bd7ba5152 Author: David Brooks Date: Tue May 21 18:03:07 2019 +1200 Properly initialise NLA solver when the simulation needs one (dbrnz/opencor/#26). commit fb643c61dd2a10b73b55916a72f35c6160af8fea Author: David Brooks Date: Tue May 21 17:22:30 2019 +1200 Use our version of `libgit2` that doesn'\''t duplicate `zlib` libraries (#2088). commit 251bf80ccc78011c3ca6ea1afe56611e1cd42716 Author: David Brooks Date: Tue May 21 13:30:59 2019 +1200 Make sure we use our `zlib` when building `libgit2` (#2088). commit fae78bd4fe9ed1fd8fbaab1285982e2fd3de3412 Merge: 675898cc5 9232ad686 Author: David Brooks Date: Sat May 18 14:25:29 2019 +1200 Merge branch '\''issue-2089'\'' into pythonplugin commit 9232ad68690e90f902dca3c718b960cde10e34cd Author: David Brooks Date: Sat May 18 14:23:03 2019 +1200 Set QT_QPA_PLATFORM_PLUGIN_PATH before running OpenCOR (#2089). commit 0eabce350ad15bb8f4849883ae9298be679b6c55 Merge: 88e670c8d 2e0bc8dff Author: Alan Garny Date: Fri May 17 19:29:44 2019 +1200 Some minor cleaning up. commit 2e0bc8dff0761ce7872fb6c4a4c4ebdf574ac235 Author: Alan Garny Date: Fri May 17 19:06:52 2019 +1200 Fixed a test following a change in one of our sample CellML files. commit 9e9a6c2816ec2196a6be4c0b0e4c2e0b2890b630 Author: Alan Garny Date: Fri May 17 18:49:26 2019 +1200 Some minor cleaning up. commit 675898cc596f38ae18419215f367f6fc49074d68 Merge: 3405d0311 944604768 Author: David Brooks Date: Fri May 17 15:23:10 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 944604768276ed815c3cfabed98dff3883e36491 Merge: 0ab973ed7 88e670c8d Author: David Brooks Date: Fri May 17 15:12:50 2019 +1200 Merge remote-tracking branch '\''upstream/master'\'' commit 88e670c8d2099075d059b1ffe58c379b0c3a44db Merge: afada809a e0c489985 Author: Alan Garny Date: Fri May 17 14:40:14 2019 +1200 Simulation support: allow a remote SED-ML file to be run headless (closes #2085). commit 0ab973ed78f8a575775b65e0f6feed27ad128445 Merge: afada809a e0c489985 Author: David Brooks Date: Fri May 17 13:00:52 2019 +1200 Merge branch '\''agarny-issue2085'\'' commit e0c489985c43c72c177682bac43a674d204e9976 Author: Alan Garny Date: Fri May 17 12:32:11 2019 +1200 Slight update to our what is new page (#2085). commit 411bb845fecf7747e17342c177730afb772a33d2 Author: Alan Garny Date: Fri May 17 12:29:02 2019 +1200 Slight updates to our downloads pages (#2085). commit 252a1b1bba1652b83f6532ebc3e6c69a2a8fce9f Author: Alan Garny Date: Fri May 17 12:24:31 2019 +1200 Make sure that we have a main window before trying to retrieve our central widget (#2085). commit 255f353f5413db49e6c3bd967939f77b409d158a Author: Alan Garny Date: Fri May 17 12:16:41 2019 +1200 Some minor cleaning up. commit de39c925fadab51f56629cbc341ad7261c85b1c8 Author: Alan Garny Date: Fri May 17 12:05:57 2019 +1200 CellML support: don'\''t ask whether we have a busy widget (#2085). commit b5494a56d15cb5097d5c7ece36f438afec6b1915 Author: Alan Garny Date: Fri May 17 11:57:56 2019 +1200 Some minor cleaning up. commit 4f80f9b8edd01afea7b918baa6fe3c65604bd545 Author: Alan Garny Date: Fri May 17 11:55:29 2019 +1200 Replaced calls to `Core::centralWidget()->xxxBusyWidget()` with called to `Core::xxxCentralBusyWidget()` (#2085). commit ff5b8f8014acfeeccf948d00257495441fa481c9 Author: Alan Garny Date: Fri May 17 11:47:07 2019 +1200 Some minor cleaning up. commit 1fd378dcd6f4b482484f14a80f45ec341a1bdcdd Author: Alan Garny Date: Fri May 17 11:23:09 2019 +1200 Some minor cleaning up. commit 3405d0311b312dc9b30a8ea547d441a2700a98f9 Author: David Brooks Date: Thu May 16 22:24:02 2019 +1200 Python: fix typo... commit 17ebcd44d9252181d48f48254b40dc96390b278d Author: David Brooks Date: Thu May 16 21:24:28 2019 +1200 Python: tweaks to `run_python` script for Windows. commit 02d010bfd13a317e18b2c521fa2cb95e713c9e7a Author: David Brooks Date: Thu May 16 19:08:06 2019 +1200 Python: update PythonPackages plugin for Linux and Windows. commit 0fa9218af2ed6a31159bf1f599468949e21f80a5 Author: David Brooks Date: Thu May 16 19:07:33 2019 +1200 Python: provide `VBS` scripts for Jupyter under Windows and tidy CMake install code. commit 95bd59fe5a077ac769a57bafb6f6b2ddcc9c756e Author: David Brooks Date: Thu May 16 09:29:21 2019 +1200 Python: minor tidy. commit 446f4f4f216d9c1604b87b10f7fa194e15e1f59e Author: David Brooks Date: Thu May 16 09:28:41 2019 +1200 Python: don'\''t try to get values from an uninitialised data store. commit ac725ec6d163e2131d4e83aa718a84a276f7e239 Author: David Brooks Date: Thu May 16 09:27:33 2019 +1200 Python: raise exception for an invalid simulation when trying to run it, not at open time. commit bab31ac7af6ba5bec09647b78b95fc254a910e3f Author: David Brooks Date: Thu May 16 08:56:00 2019 +1200 Python: use the new `RunPythonScript` plugin to run Python from the CLI. commit 8ff44309410b2a429a18599979785149b1512518 Author: David Brooks Date: Tue May 14 21:33:34 2019 +1200 Python: add `RunPythonScript` plugin to run a Python file from the CLI. commit dfc95a3cb555a09825076c48ee49112d7098aa2c Author: David Brooks Date: Tue May 14 21:32:35 2019 +1200 Python: use reworked code to initialise and run a simulation under Python. commit 57167357154e608ee23fb55f324971b8ad887781 Author: David Brooks Date: Tue May 14 14:06:51 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit afada809aedf898d38279370ba1f07e79260b52f Merge: 04269d194 2158c2b73 Author: Alan Garny Date: Tue May 14 13:04:11 2019 +1200 Simulation support: improved our checking of issues. commit 2158c2b7349ff4b44e52b8b1446a69e09695be6b Author: Alan Garny Date: Tue May 14 10:59:36 2019 +1200 Simulation support: improved our checking of issues. commit 33b009d612f462a331d8d332798ef001c837773f Author: Alan Garny Date: Tue May 14 09:26:40 2019 +1200 Some minor cleaning up. commit 798418a276486a87f764b5870d8eb0f30e208e3b Author: David Brooks Date: Mon May 13 18:52:08 2019 +1200 Python: add minor comments. commit a4b59b64fb35eb65663c1a71320b86aefa2a3238 Author: David Brooks Date: Mon May 13 18:48:40 2019 +1200 Python: update version of `ipykernel`. commit b61b1bf84b598331bfe1edd92196465eab274bc8 Author: David Brooks Date: Mon May 13 18:37:33 2019 +1200 Python: tweak `run_python.bat` for Windows. commit ad576b71837bec92f67969de466cc79ba31eb1eb Author: David Brooks Date: Mon May 13 18:36:39 2019 +1200 Python: under Windows, the typedef for `SimulationDataUpdatedFunction` depends on the version of Visual Studio. commit f75f4a894595b040b4a7d17c0a599d5002ef8d86 Author: David Brooks Date: Mon May 13 18:27:18 2019 +1200 Python: rationalise headers to remove duplicate definition of `SimulationDataUpdatedFunction`. commit 498a6a2c1308e63be7c455a206c161ac4fc2d140 Author: David Brooks Date: Mon May 13 17:04:50 2019 +1200 Python: allow a user to query the validity of a simulation and get details of any issues; don'\''t try to run an invalid simulation. commit 04269d194b9fa3376bc1e4cec85cbfb52af06ece Merge: 45b51147b 0e63e8f43 Author: Alan Garny Date: Mon May 13 13:35:58 2019 +1200 New snapshot. commit 0e63e8f438da2c97d3b582f1b568a6807eeed7ec Author: Alan Garny Date: Mon May 13 13:07:34 2019 +1200 New snapshot. commit 21d92d9145abd7da47eb5675344bd12fa614da61 Author: Alan Garny Date: Mon May 13 13:06:19 2019 +1200 Slight updates to our downloads pages. commit 45b51147bd8738f6b7318de300551334a45aba16 Merge: 7c290c590 762546bec Author: Alan Garny Date: Mon May 13 12:54:27 2019 +1200 Generalise reporting of a simulation'\''s issues (#2080). commit 762546bec779495f9dc7694a4e8538213731e4a8 Author: Alan Garny Date: Mon May 13 12:33:16 2019 +1200 Some minor cleaning up. commit dee478082eb1c55da6894eaad96ce60d66f5cb5f Author: Alan Garny Date: Mon May 13 12:01:59 2019 +1200 Some minor cleaning up. commit 5db96513cb241decd1e056ed33189914aa828969 Merge: c9901f7d8 0203602ef Author: David Brooks Date: Mon May 13 08:42:27 2019 +1200 Merge branch '\''issue-2080'\'' into pythonplugin commit 0203602efbba4458b1911c2b148dab76159b95aa Author: David Brooks Date: Mon May 13 08:40:34 2019 +1200 Missed a commit... (#2080). commit d6a58c9595fd4f1aac5ec61705428b921947a33b Author: David Brooks Date: Mon May 13 08:16:44 2019 +1200 Remember if a simulation has any blocking issues (#2080). commit c9901f7d8a6aa897776d5e40dc71778aea11a89d Merge: a33f2da42 2512e39ad Author: David Brooks Date: Sun May 12 20:28:16 2019 +1200 Merge branch '\''issue-2080'\'' into pythonplugin commit 2512e39ad5fb51592a8b783e2b19f6512c367f6b Author: David Brooks Date: Sun May 12 20:27:10 2019 +1200 Minor code tidy (#2080). commit a33f2da42131845c8bb0419942eea618a22958e1 Merge: f4f39aa55 4cabf7f0f Author: David Brooks Date: Sun May 12 20:14:23 2019 +1200 Merge branch '\''issue-2080'\'' into pythonplugin commit 4cabf7f0f11ce910cb01d87d13b38c8eee34d04f Author: David Brooks Date: Sun May 12 19:41:03 2019 +1200 ODE/DAE error message is now in a different plugin (#2080). commit 875912885cd1553be6acf03f881c1a9b10601234 Author: David Brooks Date: Sun May 12 19:23:55 2019 +1200 Generalise reporting of a simulation'\''s issues (#2080). commit f4f39aa55f4f0551d0714a7ae555805a22a3aeef Merge: ac8ad8496 7c290c590 Author: David Brooks Date: Sun May 12 16:06:17 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit 7c290c590ffe6d75899b1051a79239a9a1466328 Merge: 5eb306c3b 1c810ae60 Author: Alan Garny Date: Sun May 12 11:59:08 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 1c810ae60f74e1c7d61dece74eb3b3aa02ddabe3 Author: Alan Garny Date: Sun May 12 11:00:07 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit ac8ad84968413383f9a0aa097493a556e1f4737c Author: David Brooks Date: Sat May 11 11:11:44 2019 +1200 Python: update IPython and Jupyter packages. commit b2ffa18284b5d695202259787e65dfe4f2850aa8 Merge: 49a5a5782 f7ef3cc5d Author: David Brooks Date: Fri May 10 22:03:04 2019 +1200 Merge branch '\''pythonplugin'\'' of git://github.com/dbrnz/opencor into pythonplugin commit 49a5a5782709bb36502a61c5d25608361b3c327a Author: David Brooks Date: Fri May 10 22:01:58 2019 +1200 Python: update typedef for VC 2017. commit f7ef3cc5d4b1b9869a1b608162ceae6f8eb71b07 Author: David Brooks Date: Fri May 10 21:49:29 2019 +1200 Python: fix `run_python` script. commit 0c33c1353721655a35ec5f4629832c0d4565f49a Author: David Brooks Date: Fri May 10 20:57:11 2019 +1200 Python: update packages for Linux. commit ca7dbf5526ad5c68956dbd219a298751b2528758 Author: David Brooks Date: Fri May 10 18:09:13 2019 +1200 Python: fix typo. commit 1c41987917be430ebd17e87475f7c4c0e0d6c3b4 Author: David Brooks Date: Fri May 10 17:55:05 2019 +1200 Python: latest Jupyter doesn'\''t recognise `localhost` so explicitly use `127.0.0.1` as listen address. commit 3d62f0b7aef17c06cabe1988eae95cec1debd2ec Author: David Brooks Date: Fri May 10 15:44:19 2019 +1200 Python: make sure `pip` is current; update JupyterLab to 0.35.6. commit e351818c310dbca92ff8374d723a974c08aa086c Author: David Brooks Date: Fri May 10 14:41:38 2019 +1200 Python: add helper scripts for running Python scripts from the command line. commit 17eff3cbcdabf5c9f7e9dedf4699e71ec469cf94 Author: David Brooks Date: Fri May 10 11:44:09 2019 +1200 Python: correctly set a simulation'\''s solver and its properties (#2078). commit 9ab9c6101f2ea870b4fc588106ae7e7e8b1f9ab8 Author: David Brooks Date: Fri May 10 11:41:01 2019 +1200 Python: minor code tidy. commit cd9c6cbfa3dbc680a56aa4e3cb3cf525d74ce5b1 Author: David Brooks Date: Tue May 7 11:29:47 2019 +1200 Python: minor fixes to get a clean debug build. commit a145ccac143d3bcc1c9663c39273f1a700ec22e6 Merge: a2ab60c7b 5eb306c3b Author: David Brooks Date: Mon May 6 09:36:43 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit a2ab60c7b92c72fb878a3d2e0637b050d016fea7 Author: David Brooks Date: Mon May 6 09:34:22 2019 +1200 Python: tidy code. commit 5eb306c3bd2550877a5dd7d93a5a16a01fdbbe78 Author: Alan Garny Date: Mon May 6 09:33:44 2019 +1200 Some minor cleaning up. commit c17123b56b3c897c75f183103c102c46deb2dd70 Merge: 8ffeae512 874db2a40 Author: Alan Garny Date: Sun May 5 17:52:48 2019 +1200 Merge pull request #2077 from agarny/new-snapshot New snapshot. commit 874db2a40db47a5e0ed4a909272fb203d3503eb8 Author: Alan Garny Date: Sun May 5 17:25:14 2019 +1200 New snapshot. commit 28689ad883c59b8fdbb8adc7a0ec2fb39a7fcd44 Author: Alan Garny Date: Sun May 5 17:23:13 2019 +1200 Some minor cleaning up of our downloads pages. commit a25b4079d65442754082d48f13bbf94318688af0 Author: Alan Garny Date: Sun May 5 17:19:31 2019 +1200 Slight update to our supported platforms page. commit 8ffeae512f10627948453db22bdfb5c5519dbeaf Merge: 1d7133a2a 4e5d5427c Author: Alan Garny Date: Sun May 5 00:23:11 2019 +1200 Merge pull request #2076 from agarny/cleaning-up Some minor cleaning up. commit 4e5d5427c949b22f0603215d5f75037fdc46cf94 Author: Alan Garny Date: Sat May 4 23:50:48 2019 +1200 Some minor cleaning up. commit e6732bd9a2c87d51bd632db786bbd80f9d41630a Author: Alan Garny Date: Sat May 4 23:43:03 2019 +1200 Some minor cleaning up. commit bd8abe91852b2706d8defe85d3a3fc80f74d6ec5 Author: Alan Garny Date: Sat May 4 23:41:09 2019 +1200 Some minor cleaning up. commit 49e892c252ae57fbed12aa399523fd3b38ff04e6 Author: David Brooks Date: Fri May 3 10:03:27 2019 +1200 Python: add compiler pragmas for Linux build. commit ff470f7d7f0fb6b6a6f5521f919600fc9d2c01e7 Author: David Brooks Date: Thu May 2 21:47:41 2019 +1200 Sundials: our use of `NV_DATA_S` requires an additional diagnostic pragma. commit b547145be058ec844a0f4195f5d72ddd8e0e1ed1 Author: David Brooks Date: Thu May 2 21:44:57 2019 +1200 Python: use `pythonbegin` and `pythonend` headers for compiler pragmas. commit dfb40b45891894ad8137495c476d8f79e4e2d6fa Author: David Brooks Date: Thu May 2 15:02:21 2019 +1200 Python: fix compiler `shadow` warning. commit 2efab8b294efccaf5b8438ffb7bf2216b709cf75 Author: David Brooks Date: Thu May 2 15:01:57 2019 +1200 Python: tidy up use of includes. commit 082a75e332e00edf46c62d2b7170cd39816cb39b Author: David Brooks Date: Thu May 2 15:01:15 2019 +1200 Python: tidy code. commit 4a3c18ebe0c2ebbc868f5894e53128c7f1057775 Author: David Brooks Date: Thu May 2 15:00:33 2019 +1200 Python: use a function to cast a Python object to Python Qt. commit 6b973962512e2e9bf98d53e1f0d4b699ed9fecf5 Author: David Brooks Date: Thu May 2 14:57:01 2019 +1200 Python: use `pragma` to resolve compiler warnings. commit 6db5f69dccc002d8324c460097bad3a2c7df7f4f Author: David Brooks Date: Thu May 2 14:51:54 2019 +1200 Python: clean up merge from `master`. commit 25f5c08091d448e364f84e49a472619c34884624 Author: David Brooks Date: Thu May 2 14:46:10 2019 +1200 Python: references to `enum` constants now include a type. commit 2cf32137d1a1b453c79040744b3ca2e24cbe7fbd Author: David Brooks Date: Thu May 2 14:40:40 2019 +1200 Python: add missing destructor for interface. commit fa6d1073d27c22d4332f622dcd2810be2c63612f Author: David Brooks Date: Thu May 2 14:39:11 2019 +1200 Python: tidy up name of include file. commit 1d7133a2afe2541ed29cb803a51e080bc6e150d1 Author: Alan Garny Date: Tue Apr 30 16:31:36 2019 +1200 Some minor cleaning up. commit 36394398590d1cbbf5db67f4fd3d3ceaf0ff3a2c Author: Alan Garny Date: Tue Apr 30 15:03:36 2019 +1200 Some minor cleaning up. commit 7f5853840d57659c65d1cc1b8aedc6feac651c88 Author: Alan Garny Date: Tue Apr 30 14:45:21 2019 +1200 Some minor cleaning up. commit 782bfd7bb005d6741c3e753c23152cb0d902a0af Merge: a585e6b24 c526c5fa8 Author: David Brooks Date: Tue Apr 30 14:45:12 2019 +1200 Merge branch '\''master'\'' into pythonplugin commit c526c5fa85071e5d084472e3298c7de7c2f45bf9 Author: Alan Garny Date: Fri Apr 26 10:59:51 2019 +1200 Some minor cleaning up. commit f1e260f9c755ee6e37c011bd2d0d7c3a4ff48fd0 Merge: 8f1fa72a7 6f6662cd6 Author: Alan Garny Date: Wed Apr 24 17:37:43 2019 +1200 Merge branch '\''master'\'' into issue1801. commit 6f6662cd60ab90511687066d51932ce5ac42fa26 Author: Alan Garny Date: Wed Apr 24 17:36:25 2019 +1200 Some minor cleaning up. commit 8f1fa72a70ef56e19e545f317a58bf10ab9d9ded Merge: 474810285 31dbf734b Author: Alan Garny Date: Wed Apr 24 00:03:29 2019 +1200 Merge branch '\''master'\'' into issue1801 commit 31dbf734be0b54ec81d17824a60301f4abfff377 Merge: 7dd879fae e0f9baf5a Author: Alan Garny Date: Tue Apr 23 17:01:35 2019 +1200 Various improvements. commit e0f9baf5ab3be566dbb83c73e3caa4cbbecf4655 Author: Alan Garny Date: Tue Apr 23 16:11:34 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 7de3defc22e47dd8f71b5b48799e42b86c2831ff Author: Alan Garny Date: Tue Apr 23 15:47:27 2019 +1200 CellML Annotation view: make sure that the qualifier look up is retranslated if needed. commit 164184ad4d90ff82e0efe24b53a2e42be537f923 Author: Alan Garny Date: Tue Apr 23 15:34:12 2019 +1200 Some minor cleaning up. commit 565c6db178057eae6c017583732f4c8e0f180cc6 Author: Alan Garny Date: Tue Apr 23 15:01:11 2019 +1200 Some minor cleaning up. commit 2eb23fd1259b8880fafe3254525c0ee79094d48e Author: Alan Garny Date: Tue Apr 23 14:46:55 2019 +1200 Some minor cleaning up. commit 198f035ab5d12dd82baca3cf09c6d6ad7c4d1e55 Author: Alan Garny Date: Tue Apr 23 14:46:32 2019 +1200 Some minor cleaning up. commit 27265747f89dfd9c72187400c490ee4e531d926c Author: Alan Garny Date: Tue Apr 23 14:15:58 2019 +1200 Some minor cleaning up. commit 3c9d6a5b5474971a7668324562d52e4f36b6dc23 Author: Alan Garny Date: Tue Apr 23 14:04:07 2019 +1200 Some minor cleaning up. commit f503fa9e4b3dfe11277e0857a51b4f2204e90dca Author: Alan Garny Date: Tue Apr 23 13:38:04 2019 +1200 Some minor cleaning up. commit b5dd9f4c6792506cfd20cc315e439800367a4778 Merge: 372e74154 7dd879fae Author: Alan Garny Date: Tue Apr 23 13:29:28 2019 +1200 Merge branch '\''master'\'' into cleaning-up. commit 372e74154851a2ab568a0986e16e351da874e297 Author: Alan Garny Date: Tue Apr 23 13:29:13 2019 +1200 Some minor cleaning up. commit 99a6243041a88e502aa19d87e077bc34a0109037 Author: Alan Garny Date: Tue Apr 23 13:14:52 2019 +1200 Some minor cleaning up. commit 7dd879fae41adff44af23a072b50cbd77c022666 Merge: 04dbdcdc3 6d6470a77 Author: Alan Garny Date: Tue Apr 23 13:00:06 2019 +1200 Renamed QScintillaSupport to QScintillaWidget (closes #2066). commit 711d2e2018289d24f3047e6208f13958ced7cefc Author: Alan Garny Date: Tue Apr 23 12:53:44 2019 +1200 Some minor cleaning up. commit 01451bf4f3f338f58479f03519c58834ba2cd9e0 Author: Alan Garny Date: Tue Apr 23 12:37:05 2019 +1200 Some minor cleaning up. commit 6d6470a77d45719be99fd1170667ebaa3603b267 Author: Alan Garny Date: Tue Apr 23 12:23:27 2019 +1200 Slight update to our downloads page (#2066). commit c034c881e8c5e024f72b68e71f524f378b3d1136 Author: Alan Garny Date: Tue Apr 23 12:21:28 2019 +1200 Renamed QScintillaSupport to QScintillaWidget (#2066). commit 04dbdcdc3f503ce017f2ea662a69bf5fec9fa51d Merge: df000d4f9 523084da4 Author: Alan Garny Date: Tue Apr 23 12:17:06 2019 +1200 PMR Workspaces window: first list changed files and then show the user'\''s comment (in the synchronisation dialog) (closes #2065). commit 523084da4de794504dd292eb5fe86a57c8fd2f1c Author: Alan Garny Date: Tue Apr 23 11:56:54 2019 +1200 Slight updates to our what is new and downloads pages (#2065). commit 161bfded263cdc25134e6a65a1eb3d58356c0d83 Merge: 675721404 df000d4f9 Author: Alan Garny Date: Tue Apr 23 11:52:13 2019 +1200 Merge branch '\''master'\'' into issue2065. commit df000d4f918aa000fbb55aa47977b07bf068c705 Merge: a88d21d9f bb5adbd23 Author: Alan Garny Date: Tue Apr 23 11:51:42 2019 +1200 Mesa: upgraded to version 19.0.2 (closes #2070). commit 675721404825fc41091345f98442d1e7b8ed87ff Author: Alan Garny Date: Tue Apr 23 11:50:55 2019 +1200 PMR Workspaces window: swapped the message and changes widgets (#2065). commit 9acd7c8c83a97a8c2fa2d4af03c7e709c04c8e69 Author: Alan Garny Date: Tue Apr 23 11:47:07 2019 +1200 Some minor cleaning up. commit bb5adbd238118140b9ba69a891578b5a011ea5a1 Author: Alan Garny Date: Tue Apr 23 11:23:04 2019 +1200 Revert "Only build our Mesa package (#2070)." This reverts commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41. commit 667789a837b20b6a5bf909a6a1e36ba631021b58 Author: Alan Garny Date: Tue Apr 23 11:22:16 2019 +1200 Slight update to our downloads page (#2070). commit d38102e0b79a6efd52efd52fd13de9eb6ebade67 Author: Alan Garny Date: Tue Apr 23 11:20:26 2019 +1200 Mesa: binary for version 19.0.2 (#2070). commit e2c7d9e3f0dc984ebb824914bfb28e41d99316ea Author: Alan Garny Date: Tue Apr 23 11:14:30 2019 +1200 Mesa: upgrade to version 19.0.2 (#2070). commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41 Author: Alan Garny Date: Tue Apr 23 11:12:53 2019 +1200 Only build our Mesa package (#2070). commit a88d21d9f0d2a4d07c33e3ab587828c8106c2642 Merge: 451c9c73f 186d08340 Author: Alan Garny Date: Tue Apr 23 11:09:27 2019 +1200 jQuery: upgraded to version 3.4.0 (closes #2068). commit 186d0834009c4dd875cfbb94af1d1d9fdc424223 Author: Alan Garny Date: Tue Apr 23 10:51:08 2019 +1200 Slight update to our documentation (#2068). commit 83e5198bd33db350900975c1b275cdcdb4f5c8bd Merge: 9678bb581 451c9c73f Author: Alan Garny Date: Tue Apr 23 10:49:07 2019 +1200 Merge branch '\''master'\'' into issue2068. commit 451c9c73f65a4880f6be5ecbb3302fd231fa85ae Merge: 0715bcf3c b6a8cdee8 Author: Alan Garny Date: Tue Apr 23 10:48:42 2019 +1200 libSBML: upgraded to version 5.18.0 (closes #2064). commit b6a8cdee8f536d12a0e98809644b59fe6ab658d5 Author: Alan Garny Date: Tue Apr 23 10:24:35 2019 +1200 libSBML: updated our tests (#2064). commit 9678bb5814451d634ce54d6b31d0125e91507a68 Author: Alan Garny Date: Tue Apr 23 10:18:58 2019 +1200 jQuery: upgraded to version 3.4.0 (#2068). commit 5b2ea9dc53fd7ca72f697cbc8c5410cd107e780a Author: Alan Garny Date: Tue Apr 23 10:13:00 2019 +1200 Make sure that we can use libSBML 5.18.0 on macOS (#2064). commit 48a8d0167b8acbc306faf4da8e93bf83eabc9c16 Author: Alan Garny Date: Tue Apr 23 10:12:34 2019 +1200 Revert "Only build the libNuML and libSEDML packages (#2064)." This reverts commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e. commit 9739ffe162fc8727366c848fc1c92c8773e39437 Author: Alan Garny Date: Tue Apr 23 10:12:14 2019 +1200 libNuML and libSEDML: new binaries following the release of libSBML 5.18.0 (#2064). commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e Author: Alan Garny Date: Tue Apr 23 09:56:54 2019 +1200 Only build the libNuML and libSEDML packages (#2064). commit 73d243169581f9323465bf2ab17d33dd34d38f3e Author: Alan Garny Date: Tue Apr 23 09:46:54 2019 +1200 Revert "Only build the libSBML package (#2064)." This reverts commit 2972166c4eb15c5adbd2ff52006226a481d198b4. commit d663859855fcf3142fe1483433ff291ae6d3827b Author: Alan Garny Date: Tue Apr 23 09:46:36 2019 +1200 Slight update to our downloads page (#2064). commit 4d966812f120bf9f203cfe633ab478c5dae33ec5 Author: Alan Garny Date: Tue Apr 23 09:46:16 2019 +1200 libSBML: binaries for version 5.18.0 (#2064). commit 62385b8b0f7ee05c359ddbdce66795a7b131a052 Author: Alan Garny Date: Tue Apr 23 09:14:25 2019 +1200 libSBML: upgraded to version 5.18.0 (#2064). Note: on Windows, we are now using MSVC 2017 hence we also updated the Windows dependencies. commit 2972166c4eb15c5adbd2ff52006226a481d198b4 Author: Alan Garny Date: Tue Apr 23 09:06:06 2019 +1200 Only build the libSBML package (#2064). commit 0715bcf3cebecf2914979b28eaa1f4089fd9c7e8 Merge: 3781995c5 41eeb2a6b Author: Alan Garny Date: Mon Apr 22 18:18:56 2019 +1200 Added support for Clang-Format (closes #2061). commit 41eeb2a6bd529f1c21cdd2817f2c1299727f033f Author: Alan Garny Date: Mon Apr 22 17:39:20 2019 +1200 Clang-Tidy: re-disable llvm-include-order (#2061). Indeed, we want Clang-Format to order things, but we don’t want Clang-Tidy to check for them since in some cases our includes may not be sorted, e.g. when we include CellML API related orders since we need to guard them with cellmlapibegin.h and cellmlapiend.h. commit 5556cfd68487b0af9b3d1fbc38d129b42df7b6ce Merge: 050f4e6eb 438d930d3 Author: Alan Garny Date: Mon Apr 22 17:35:01 2019 +1200 Merge branch '\''issue2061'\'' of https://github.com/agarny/opencor into issue2061 commit 050f4e6ebcff4c483e7ade51039c63abacfb8a2c Author: Alan Garny Date: Mon Apr 22 17:34:56 2019 +1200 Windows batch file to format our code (#2061). commit 438d930d3bc85b38853b6cacea7a803efbc56ac9 Merge: 9ba81a25c 3781995c5 Author: Alan Garny Date: Mon Apr 22 16:22:27 2019 +1200 Merge branch '\''master'\'' into issue2061. commit 3781995c514311e7862e061f7c8eb9850cfaf929 Merge: fc33ca3b8 9a2316631 Author: Alan Garny Date: Mon Apr 22 16:19:32 2019 +1200 Some minor cleaning up. commit 9a23166318b4ef0df8d09a6fad0046cc7c9cf363 Author: Alan Garny Date: Mon Apr 22 15:44:11 2019 +1200 Some minor cleaning up. commit 65d1a0aaff85aeeafc542765d045c97e5fe6083d Author: Alan Garny Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 9ba81a25c02c3e961075a966e8f2429dde284748 Author: Alan Garny Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 1a62b4f9d5e01d721aabaf4c9e9b43585214be7b Author: Alan Garny Date: Mon Apr 22 14:38:08 2019 +1200 Linux/macOS script to format our code (#2061). commit d82e7f84cf4916fa5f008e788af2653d71f52c52 Author: Alan Garny Date: Mon Apr 22 13:36:17 2019 +1200 Initial .clang-format file (#2061). Note: we used to disable llvm-include-order in Clang-Tidy, but we should have it back. This means that some of our files (e.g. src/plugins/support/CellMLSupport/src/cellmlfile.cpp) will have to be reformatted a bit so that headers don’t get wrongly sorted (because of our, say, inclusion of “cellmlapibegin.h” and “cellmlapiend.h”). commit fc33ca3b8fdb46cf0b468d5fe046890948d07e95 Merge: 77cd1f25e f456f5f65 Author: Alan Garny Date: Mon Apr 22 13:11:31 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (closes #2057). This PR was checked (on Jenkins) against Clang-Tidy, but this is clearly not going to be a long-term solution for OpenCOR since it really takes a long time (between 1h and 2h to do analyse both the release and debug versions of OpenCOR). So, I am going to disable the Clang-Tidy checks in Jenkins, which means that we will have to rely on people (me?) enabling Clang-Tidy once in a while locally (there is an `ENABLE_CLANG_TIDY` option in OpenCOR'\''s CMake script) to make sure that our codebase is still "OK". commit f456f5f6578582b257306198e6d82bbc10064c0b Author: Alan Garny Date: Mon Apr 22 10:45:08 2019 +1200 Make sure that our Python and PythonPackages plugins have been dealt with before building our documentation. commit e8a4abdaa54fef32f5f6061680fdcaf61b064fb1 Author: Alan Garny Date: Sun Apr 21 18:33:36 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (#2057). commit 7037071a0387b3466f28fa4ce1cbd26d9705cd3c Author: Alan Garny Date: Sun Apr 21 15:13:06 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (#2057). commit 77cd1f25e08ba7947e11c09b1a0212e2d8d7570c Merge: e7beddd92 989c8fdfa Author: Alan Garny Date: Tue Apr 9 16:46:51 2019 +1200 Cleaning up. commit 989c8fdfac895c520f1846585f54b78a11b37939 Author: Alan Garny Date: Tue Apr 9 16:20:22 2019 +1200 Some minor cleaning up. commit f74d0a4010c7140f47bb56f5974e05a7f12b7ed2 Author: Alan Garny Date: Tue Apr 9 16:03:33 2019 +1200 Some minor cleaning up. commit f5657171ddd17dcfe87a95e97432d4d4f07017e8 Author: Alan Garny Date: Tue Apr 9 15:58:58 2019 +1200 Some minor cleaning up. commit 51700dfc2549f86aa0f64eed902c9278f5996481 Author: Alan Garny Date: Tue Apr 9 15:46:58 2019 +1200 Some minor cleaning up. commit e7beddd92f9b052403d7a1e3c973a63e3b8c2e74 Merge: 90cf7ebdd 33b39c059 Author: Alan Garny Date: Tue Apr 9 15:30:23 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 33b39c059b39e1701945735d90d8a206ba6c1fc9 Author: Alan Garny Date: Tue Apr 9 14:46:28 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 96ae94d6b3fde4e3adf0800319d46f0314bb58f2 Author: Alan Garny Date: Tue Apr 9 14:44:44 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 041d7334987234ba73ee81ffa1b31ecbf708bc13 Author: Alan Garny Date: Tue Apr 9 14:36:44 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 3f53d850a7fbc8422b16b97ffb365f14a399f4ef Author: Alan Garny Date: Tue Apr 9 14:34:50 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 7fd5bb4682e36bfc26736fb6d6151545ac77446e Author: Alan Garny Date: Tue Apr 9 14:29:49 2019 +1200 Some minor cleaning up. commit 6713cc4e24f0460c7175afd46346135590811880 Author: Alan Garny Date: Tue Apr 9 14:27:04 2019 +1200 Replaced some `enum`s with some `enum class`s. commit d0a58ea866f5d0b402f398da8f262019b830e40e Author: Alan Garny Date: Tue Apr 9 14:21:09 2019 +1200 Some minor cleaning up. commit 2e1c1c557effc50ebabfa70e0b8727104aa3bad2 Author: Alan Garny Date: Tue Apr 9 14:15:56 2019 +1200 Some minor cleaning up. commit 862fa3eaad51a5ef75edffba000034fcfb639a47 Author: Alan Garny Date: Tue Apr 9 13:52:07 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 0f0b963779e132a834bac5206ae4f002c3a9a840 Author: Alan Garny Date: Tue Apr 9 13:35:05 2019 +1200 Replaced some `enum`s with some `enum class`s. commit d2daa1e833d2be4ff63bf4e5160e6a45458c0364 Author: Alan Garny Date: Tue Apr 9 13:31:53 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 56fa3904bb09ed4231b27ee481165d708529262f Author: Alan Garny Date: Tue Apr 9 13:30:34 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 07e23d454611c842af2ace9f80630e727f33390d Author: Alan Garny Date: Tue Apr 9 13:28:32 2019 +1200 Replaced some `enum`s with some `enum class`s. commit cf01697c8a9a1999139dd8a18f5bc86372e4428f Author: Alan Garny Date: Tue Apr 9 13:24:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 452d601300388f4e87fb097406ed32477746400f Author: Alan Garny Date: Tue Apr 9 13:19:51 2019 +1200 Some minor cleaning up. commit 3f7558a4eb5396f7ce11da052927a967e30e9760 Author: Alan Garny Date: Tue Apr 9 13:15:13 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 6a85de55847ee520f13adb38f813b80de68cc437 Author: Alan Garny Date: Tue Apr 9 13:13:25 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 40127d1fed497623d92f5bcca5b044b3a1358549 Author: Alan Garny Date: Tue Apr 9 13:11:42 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 1d6aaa90e758e9c035f16a9e5b14532d5c2d7d92 Author: Alan Garny Date: Tue Apr 9 13:06:06 2019 +1200 Replaced some `enum`s with some `enum class`s. commit c711b2efddb9e84beaabbe027c29dabb8d2030e7 Author: Alan Garny Date: Tue Apr 9 10:59:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 2e9c7249b9f307d299a1c3540264f5a72a2be39e Author: Alan Garny Date: Tue Apr 9 10:55:40 2019 +1200 Replaced some `enum`s with some `enum class`s. commit be3e6599794e3dfe1471d84ab425489df7f11d39 Author: Alan Garny Date: Tue Apr 9 10:54:14 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 28b2036aa224730f1f1198eb762ec4905fa077ab Author: Alan Garny Date: Tue Apr 9 10:52:02 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 1060e3ab424c3ce6418ac0c0d7e6dcd9ea771f3d Author: Alan Garny Date: Tue Apr 9 10:49:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 8228242f40ceb66b99d3015ce19785b9baa78305 Author: Alan Garny Date: Tue Apr 9 10:43:39 2019 +1200 Replaced some `enum`s with some `enum class`s. commit c70646db8c0ed91fd29610308431c84a4f8d97cb Author: Alan Garny Date: Tue Apr 9 10:36:00 2019 +1200 Some minor cleaning up. commit d95ff892e51a9ef539f9e0f28bd1f22670614191 Author: Alan Garny Date: Tue Apr 9 10:00:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit cd11e94df562576bd47e1532b260d653e3dd67e8 Author: Alan Garny Date: Tue Apr 9 09:50:47 2019 +1200 Replaced some `enum`s with some `enum class`s. commit ad1b5f552a47203c4a29fead9458ae6525d32d8e Author: Alan Garny Date: Tue Apr 9 09:45:56 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 15a3fb5d1d609e5d4f2f83428acd964f812b5be8 Author: Alan Garny Date: Tue Apr 9 09:41:17 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 38187d5103139d242f07b94d9e370a2a84f7f81d Author: Alan Garny Date: Tue Apr 9 09:37:56 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 667ba2abdc76d862b98c36a0a869301df2d4acd1 Author: Alan Garny Date: Tue Apr 9 08:56:43 2019 +1200 Some minor cleaning up. commit 1ce36a77e040d13057b3cd9981a525f5b6785af3 Author: Alan Garny Date: Tue Apr 9 08:55:40 2019 +1200 Replaced some `enum`s with some `enum class`s. commit fce9bea649020eefd19cd2b3aa3c73043205239a Author: Alan Garny Date: Tue Apr 9 08:28:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 50296f4414687d30fced013181d29cfacf0ed650 Author: Alan Garny Date: Tue Apr 9 08:25:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit a1a69196deed0125f87ef37a82ff820c41eada03 Author: Alan Garny Date: Tue Apr 9 08:15:33 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 68318be959f10a02ad73f2273dc0af09d24dc92e Author: Alan Garny Date: Mon Apr 8 18:06:26 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 44d334e9215670fd691fb46a3e9b2bf1702d0516 Author: Alan Garny Date: Mon Apr 8 17:35:11 2019 +1200 Replaced some `enum`s with some `enum class`s. commit deda749cb28e51e78e57b1faf132016d22f7f391 Author: Alan Garny Date: Mon Apr 8 17:27:17 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 90cf7ebdd10f0f828d4f6672ad881f3326f84acd Merge: e766ebea6 f3b5d1d5e Author: Alan Garny Date: Fri Apr 5 18:47:05 2019 +1300 Some minor cleaning up. commit f3b5d1d5edf39b0d9f7d31c51c593edf6715b5dd Author: Alan Garny Date: Fri Apr 5 12:31:14 2019 +1300 Some minor cleaning up. commit 787bc2d856b88c165ab50815a76a2f0f6b4d1a1d Author: Alan Garny Date: Fri Apr 5 12:17:26 2019 +1300 Simulation Experiment view: make sure that SED-ML-related messages are properly formatted. commit 76118351c43bf4a8dd00ff9aa79ce7fe41fc86c0 Author: Alan Garny Date: Fri Apr 5 12:08:06 2019 +1300 SED-ML support: prevent duplicate errors from libSEDML. commit 1ddbf2c0ad12856905d4a5fdec2117dad43e4e8d Author: Alan Garny Date: Fri Apr 5 11:12:06 2019 +1300 Some minor cleaning up. commit f24ff8cff4d77af4c8b776f9de0a74e6b73649ab Author: Alan Garny Date: Fri Apr 5 11:04:40 2019 +1300 SED-ML support: improved our detection of SED-ML files. commit 526b808e3376ad4703f2e9ea143720494d3aa406 Author: Alan Garny Date: Fri Apr 5 11:02:17 2019 +1300 Simulation support: make sure that we have a runtime before doing certain things. commit e766ebea6065553b096a3e7f848746d68b9f77a2 Author: Alan Garny Date: Thu Apr 4 16:05:34 2019 +1300 Some minor cleaning up. commit 022d95b71e4c11b094309c355d1dabc57d77aaef Merge: 8a52fe433 27c4eb923 Author: Alan Garny Date: Thu Apr 4 13:05:30 2019 +1300 Some minor cleaning up. commit 27c4eb923d033b9b04438b8099df18355a46c437 Author: Alan Garny Date: Thu Apr 4 12:46:13 2019 +1300 Some minor refactoring. commit 04948005237f11f06e8a79da302e982a6029daf1 Author: Alan Garny Date: Thu Apr 4 12:45:53 2019 +1300 Some minor cleaning up. commit 400c3e389feb9c6972527a151bc9d1255a9226fc Author: Alan Garny Date: Thu Apr 4 12:45:26 2019 +1300 SED-ML support: always create an L1V3 SED-ML document. commit 2dfef31d594223e35899eaf2d820d895451774ae Author: Alan Garny Date: Thu Apr 4 12:44:22 2019 +1300 Some minor cleaning up. commit 8a52fe433d3f25ab143d884f1264f2688e1383cb Merge: f192b77d3 0fa569554 Author: Alan Garny Date: Wed Apr 3 15:52:16 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS (closes #2050). commit 0fa569554abb307982eed32fee232c6f40154f5a Author: Alan Garny Date: Wed Apr 3 15:28:57 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS (#2050). commit f192b77d35bc68517ff3b79f9251e9cb6edad680 Merge: dce3cd19d bb034d545 Author: Alan Garny Date: Thu Mar 28 09:23:58 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS (closes #2050). commit bb034d545c1748326cb44895d550d25abaa26633 Author: Alan Garny Date: Thu Mar 28 08:58:38 2019 -0700 Revert "Temporarily build QScintilla and Qwt." This reverts commit 7d2677eaf67072e8f135602108e95a8e663b5e00. commit 9f8609d4b0b344a665f998a788108c1c9dbcbb0d Author: Alan Garny Date: Thu Mar 28 08:57:52 2019 -0700 Slight update to our downloads page (#2050). commit e20bd37152f9ef04a007ee2ef693d7b083b4c2a9 Author: Alan Garny Date: Thu Mar 28 08:54:53 2019 -0700 Updated Linux binary for QScintilla 2.11.1 and Qwt 6.1.4 (#2050). Fixed the RPATH value. commit 31f0a33831c4b2eb5394d72da6c8921d805f6131 Author: Alan Garny Date: Wed Mar 27 22:04:16 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 3d349857f98043b327f0f24633ed6b3deaf60efb Author: Alan Garny Date: Wed Mar 27 21:55:49 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 85b0f6896c08e31afc7ca680defdfb6c3a6ecdb3 Author: Alan Garny Date: Wed Mar 27 21:51:22 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 32155b9340e77eb7ac6fd1f4fcbe88d31d12eb54 Author: Alan Garny Date: Wed Mar 27 21:48:58 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 03dbf983f46d12f0d187635bc3204f693582a0df Author: Alan Garny Date: Wed Mar 27 21:39:39 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit dc97febb8b73fd341affcc22da8264d19eea11f9 Author: Alan Garny Date: Wed Mar 27 16:46:25 2019 -0700 Some minor cleaning up. commit 505da57e623a20dc8533801218e9361935b19c66 Author: Alan Garny Date: Wed Mar 27 16:37:57 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit fd4d12958bc486997fc68b153defeed57ef53a5d Author: Alan Garny Date: Wed Mar 27 16:30:33 2019 -0700 Fix the RPATH for QScintilla and Qwt on Linux (#2050). commit a43846777a20b08f907fc27272e77124a14ee7f9 Author: Alan Garny Date: Wed Mar 27 16:23:59 2019 -0700 Some minor cleaning up. @executable_path/../Frameworks now gets automatically added when building QScintilla and Qwt. Something clearly happened recently since we used to need to add @executable_path/../Frameworks. Maybe the new version of Qt is somehow responsible for this or maybe CMake (most likely)? Whatever the case, we must not add @executable_path/../Frameworks anymore otherwise the build fails with a message telling us that the RPATH is already set, etc. commit 3a49030cc27a538bfd12bce5b5d1af98761f289a Author: Alan Garny Date: Wed Mar 27 16:09:55 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 9ecbc81605a90007ac28d2abea7152eaeb36f872 Author: Alan Garny Date: Wed Mar 27 14:40:43 2019 -0700 Some minor cleaning up. commit 86ea872e4bfb57381205265f8ea83fda3f59e0c4 Author: Alan Garny Date: Wed Mar 27 14:36:51 2019 -0700 Some minor cleaning up. commit ce7f8d899d5af0b73c03a07219ac648510089e86 Author: Alan Garny Date: Wed Mar 27 13:47:53 2019 -0700 Some minor cleaning up. commit 7d2677eaf67072e8f135602108e95a8e663b5e00 Author: Alan Garny Date: Wed Mar 27 12:04:00 2019 -0700 Temporarily build QScintilla and Qwt. commit 969e17aae29817e020c6fa0051948319c9e0b4f7 Author: Alan Garny Date: Wed Mar 27 12:03:28 2019 -0700 Linux: don'\''t need to deploy some system libraries anymore (#2050). At least, not for Ubuntu 18.04 LTS. Will be interesting to see whether it still works with say Ubuntu 18.10 and the forthcoming 19.04. commit 702255556524c7fbc6adff06aae88701076a451d Author: Alan Garny Date: Wed Mar 27 10:29:55 2019 -0700 Linux: make sure that all our binary files use `RPATH` and not `RUNPATH` (#2050). commit 371f71886cf7e0e5a6e09d5aee31a2a8b968fd22 Author: Alan Garny Date: Wed Mar 27 09:56:39 2019 -0700 Some minor cleaning up. commit a2265fa0616e205621b7081c0f2d3217aa37de4e Author: Alan Garny Date: Mon Mar 25 20:27:29 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS (#2050). commit 8b44c068093cb20b65df526a02f0e9e4abebea49 Author: Alan Garny Date: Mon Mar 25 15:05:55 2019 -0700 Some minor cleaning up. commit 6bbafc4a06b9bcc32e7eed08f79fb2c566b5d612 Author: Alan Garny Date: Mon Mar 25 14:58:28 2019 -0700 Slight update to our supported platforms (#2050). commit dce3cd19d8748a095965fb34accd6917113f5e0f Merge: 7b4de3b52 1ad0e1143 Author: Alan Garny Date: Sun Mar 24 09:11:55 2019 +1300 libSEDML: removed our use of an explicit release tag (#2042). commit 1ad0e1143765b6cf53edd5cb47dc691e019c520e Author: Alan Garny Date: Sun Mar 24 08:49:39 2019 +1300 libSEDML: removed our use of an explicit release tag (#2042). The release tag used to be `0.4.4`, which required our use of an explicit release tag since by default we would expect the release tag to be `v0.4.4`. However, a new `v0.4.4` release tag has been created on GitHub, hence now we don’t need to specify an explicit release tag. commit 7b4de3b526cd22fde89f7c2b60d805ef99010af8 Merge: c34e93562 f5beb289a Author: Alan Garny Date: Sat Mar 23 16:25:21 2019 +1300 libSEDML: upgraded to version 0.4.4 (closes #2042). commit f5beb289a5f0bf69263a9b2d5757803f1753d74b Author: Alan Garny Date: Sat Mar 23 16:05:53 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 315132b2e3774f1f0bf78c994f74790c3fc3a383 Author: Alan Garny Date: Sat Mar 23 15:54:48 2019 +1300 Slight update to our downloads page (#2042). commit d6c53abcf57aef7ca5fb046e85a35a4d825862ca Author: Alan Garny Date: Sat Mar 23 15:51:27 2019 +1300 Revert "Only build libSEDML (#2042)." This reverts commit 4ccd3818298e389d1348bf529307830adbc52cdb. commit 5e92806443cc46a1ac998d7a8234111b6ad52386 Author: Alan Garny Date: Sat Mar 23 15:51:09 2019 +1300 libSEDML: binaries for version 0.4.4 (#2042). commit efe1e517707cf66587a133c2fbec26d544a8f97c Author: Alan Garny Date: Sat Mar 23 15:41:10 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 5da0f1e7b85f16985f414ee15bb10d871b3cd676 Author: Alan Garny Date: Sat Mar 23 15:39:24 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 4ccd3818298e389d1348bf529307830adbc52cdb Author: Alan Garny Date: Sat Mar 23 15:38:58 2019 +1300 Only build libSEDML (#2042). commit c34e93562662cd8a2fcdfdd338a8cdf816e0406e Merge: 864d8c572 3c48dd0d3 Author: Alan Garny Date: Sat Mar 23 14:42:09 2019 +1300 LLVM+Clang: upgraded to version 8.0.0 (closes #2040). commit 3c48dd0d3db35d9058d85a436f1ef347b3aa8494 Author: Alan Garny Date: Sat Mar 23 13:07:54 2019 +1300 Revert "Only build our LLVMClang plugin (#2040)." This reverts commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9. commit 95927f49164b008167ac817043d6a42eb4a423bb Author: Alan Garny Date: Sat Mar 23 13:07:32 2019 +1300 LLVMClang: binaries for version 8.0.0 (#2040). commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9 Author: Alan Garny Date: Sat Mar 23 09:48:27 2019 +1300 Only build our LLVMClang plugin (#2040). commit e832f9d439dc2e3acd3ab4aa36ad62981908897a Author: Alan Garny Date: Sat Mar 23 09:42:55 2019 +1300 Compiler engine: simplified our compileCode() method following changes to LLVM+Clang. commit f479842519c7c16c964daac6723c1543c0865ecf Author: Alan Garny Date: Sat Mar 23 01:19:24 2019 +1300 Slight update to our downloads page (#2040). commit 2d923563e9ca41c05123fdabeb8c761801c01c1e Author: Alan Garny Date: Sat Mar 23 01:16:37 2019 +1300 Revert "Only build our LLVMClang plugin (#2040)." This reverts commit 624cd66011981e0631d924c3174948aff5bd3cc5. commit dd843acc25d3d778e1cb682a2a66db1e792c8072 Author: Alan Garny Date: Sat Mar 23 01:16:19 2019 +1300 LLVMClang: binaries for version 8.0.0 (#2040). commit c7f5858a89a19768d843df09ceb4e9429333b0c9 Author: Alan Garny Date: Sat Mar 23 00:55:06 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit 28da7961de0e5c60e29efc7d256c397248963cab Merge: 0436cf3b3 864d8c572 Author: Alan Garny Date: Fri Mar 22 16:30:52 2019 +1300 Merge branch '\''master'\'' into issue2040. commit 864d8c572909a79304eb76863a44b89b8a2fc79c Merge: a87719042 75f3d7fae Author: Alan Garny Date: Fri Mar 22 16:29:58 2019 +1300 Mesa: upgraded to version 18.3.5 (closes #2044). commit 75f3d7fae27330ea72232a648b3839e362e578bf Author: Alan Garny Date: Fri Mar 22 16:01:01 2019 +1300 Revert "Only build the Mesa library (#2044)." This reverts commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af. commit 958e8149e7a4d09e1787209038ce3c6db1a07eb3 Author: Alan Garny Date: Fri Mar 22 15:58:06 2019 +1300 Mesa: binary for version 18.3.5 (#2044). commit c4eb44a0adb0dd6e7768f5bc451c1b16c5522ac3 Author: Alan Garny Date: Fri Mar 22 15:56:34 2019 +1300 Slight update to our downloads page (#2044). commit 94f74b09f89d47d3a69e3dce39078c4f2ac2c464 Author: Alan Garny Date: Fri Mar 22 15:48:08 2019 +1300 Mesa: upgraded to version 18.3.5 (#2044). commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af Author: Alan Garny Date: Fri Mar 22 15:47:14 2019 +1300 Only build the Mesa library (#2044). commit 0436cf3b3214d55b4f342d2f7f2491e31b8f93ea Merge: 93d7dad79 a87719042 Author: Alan Garny Date: Fri Mar 22 13:33:49 2019 +1300 Merge branch '\''master'\'' into issue2040. commit a87719042aced850544721fea356f1c7182a8a7c Merge: 3f7e13283 e5da897cd Author: Alan Garny Date: Fri Mar 22 13:32:24 2019 +1300 General: now rely on Visual Studio 2017 Update 9 to build OpenCOR on Windows (closes #2041). commit e5da897cdebbdbc2f36b84be3821dd42df3fdf58 Author: Alan Garny Date: Fri Mar 22 09:52:15 2019 +1300 Some minor cleaning up. commit 60cc12828d3d93a45b3a7de4d6026ed7a2f94a3f Author: Alan Garny Date: Fri Mar 22 09:49:20 2019 +1300 Slight update to our downloads pages (#2041). commit dc312ac6ef957de1eb1bc7780a7cc9fd0038f082 Author: Alan Garny Date: Fri Mar 22 09:41:48 2019 +1300 Only deploy the DLLs we (may) really need (#2041). commit 8ac92b5665cac03b528f4af8f8fdb45f62667901 Author: Alan Garny Date: Fri Mar 22 09:04:29 2019 +1300 Some minor cleaning up. commit 87db62bc22711938d9c26d13464be3cd0333cd84 Author: Alan Garny Date: Thu Mar 21 18:02:52 2019 +1300 Windows: update the path to VC++ DLLs (#2041). commit 93d7dad797180e143c941f729e0fb763f400ec51 Author: Alan Garny Date: Thu Mar 21 17:24:07 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). The idea is to use VS 2017 (see issue #2041), so no need to allow the old toolchain. commit 86e5cfc589aab9af2f63382dc903f7fa75b753fc Author: Alan Garny Date: Thu Mar 21 17:18:11 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit a7c1a3b8bc4ee54d0a6d584f77e693d1475d9f1e Author: Alan Garny Date: Thu Mar 21 17:14:10 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 (#2041). commit b0b40a92df8a96b37a0512415c7f51b0ae395583 Author: Alan Garny Date: Thu Mar 21 16:57:30 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 (#2041). commit a9e29318bee0187a907a10f9afd7f2578773bce6 Author: Alan Garny Date: Thu Mar 21 16:52:11 2019 +1300 Windows: use Visual Studio 2017 to build OpenCOR (#2041). commit e34e8d145a03f6536ff0c677193b3e040c23ada9 Author: Alan Garny Date: Thu Mar 21 12:47:06 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit 2b6d3f0e5ae4e324d50efb3b566d034177c4c504 Author: Alan Garny Date: Thu Mar 21 08:51:05 2019 +1300 LLVMClang: allow the (temporary) use of MSVC 2015 on Windows (#2040). commit f42729c0af70d3572c2b8a2c7be682d1cd7d8cfd Author: Alan Garny Date: Thu Mar 21 08:14:30 2019 +1300 LLVMClang: don'\''t include the (new) benchmarks (#2040). commit 9c724fc92c02f9c81a4b2a38b85f0518484fbb9f Author: Alan Garny Date: Thu Mar 21 07:47:33 2019 +1300 LLVMClang: upgrade to version 8.0.0 (#2040). commit 624cd66011981e0631d924c3174948aff5bd3cc5 Author: Alan Garny Date: Thu Mar 21 07:44:14 2019 +1300 Only build our LLVMClang plugin (#2040). commit 3f7e13283ba1b28ca5364db0df61fde8245f0258 Merge: 5af53d478 7da2eff20 Author: Alan Garny Date: Tue Mar 19 19:08:36 2019 +1300 Some minor cleaning up. commit 7da2eff201081142d312cc0e69daa744c666945d Author: Alan Garny Date: Tue Mar 19 18:51:31 2019 +1300 Some minor cleaning up. commit 5af53d4788963c5cca83fc1dc8c96bc363f319fc Merge: 21a803c33 6192775a3 Author: Alan Garny Date: Fri Mar 15 11:12:08 2019 +1300 Some minor cleaning up. commit 6192775a31ff9e065006e2b9ca0a01f679cce8e6 Author: Alan Garny Date: Fri Mar 15 10:51:22 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 79d30c7d1671058955bcfe11f4bb7f2d098fef2d Author: Alan Garny Date: Fri Mar 15 10:26:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit c49c129bddd93a8c8175134f7d56be4d92ad75a2 Author: Alan Garny Date: Fri Mar 15 10:25:35 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a17d71cafcb8994005ca020ee84d5c7e8d1c201d Author: Alan Garny Date: Fri Mar 15 10:24:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91dc695c550feaabacb7c0554b8dbcc48ef2a94c Author: Alan Garny Date: Fri Mar 15 10:23:08 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 83d4ed8b14d4bccf9a4bf076a409ff4703deb0c4 Author: Alan Garny Date: Fri Mar 15 10:22:11 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a1d756af84d4c81a498c347d67016dd6d714f01d Author: Alan Garny Date: Fri Mar 15 10:19:55 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b660a9d311abf1505203e4ffde52be2fa5cdb6b3 Author: Alan Garny Date: Fri Mar 15 10:16:34 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b7be47b379e48b76dc865741d0d44c44056d52f9 Author: Alan Garny Date: Fri Mar 15 10:15:49 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91a2750d1fea075a5aab4ec1e19c7897ee13b89a Author: Alan Garny Date: Fri Mar 15 10:14:48 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 24b89a8d979f5bbcc3c5c03ae655a0abaa4c8d6e Author: Alan Garny Date: Fri Mar 15 10:07:19 2019 +1300 Make sure that a QDomDocument specifies the encoding when getting serialised. commit a65ef0fdedabf0963072f5f222f17b87743b5ece Author: Alan Garny Date: Fri Mar 15 09:30:18 2019 +1300 Some minor cleaning up with regards to our default CellML and SED-ML files. commit 21a803c33683714fa39fc8ce6137a8bbf5c12712 Merge: 4a4987575 47467fb4e Author: Alan Garny Date: Thu Mar 14 17:27:05 2019 +1300 Some minor cleaning up. commit 47467fb4e6b4d578a99e5df94490f2ff1dcce20d Author: Alan Garny Date: Thu Mar 14 17:08:57 2019 +1300 Some minor cleaning up. commit 05da054a8fd4f656e22e0eb8a30e6bedd81d575c Author: Alan Garny Date: Thu Mar 14 16:24:52 2019 +1300 Some minor cleaning up. commit 4a4987575047c8a0ddbecf2c8cf327841062155b Merge: daca9bdf6 eafd51625 Author: Alan Garny Date: Thu Mar 14 15:37:08 2019 +1300 Always pass QDomElement objects by reference. commit eafd516257797b521cf0688da3217ff7853bb5d7 Author: Alan Garny Date: Thu Mar 14 14:58:35 2019 +1300 Some minor cleaning up. commit 2966200622a775480dd64870e5eb73adb659fcda Author: Alan Garny Date: Thu Mar 14 14:26:26 2019 +1300 Always pass QDomElement objects by reference. This adds a bit more code, but it prevents shallow copies, so it ought to be slightly faster, which cannot be a bad thing. commit daca9bdf6da90b83721e322124541f2be8420199 Merge: fe6ca4e69 33e3d9c72 Author: Alan Garny Date: Thu Mar 7 19:16:11 2019 +1300 New snapshot. commit 33e3d9c72d810d561da8dcde07646920d38f1be5 Author: Alan Garny Date: Thu Mar 7 18:58:42 2019 +1300 New snapshot. commit fe6ca4e69aa17272617ace4ad0f7aaeb581d3c4f Merge: 5b2db996b 469102545 Author: Alan Garny Date: Thu Mar 7 18:57:08 2019 +1300 General: OpenCOR'\''s geometry is now properly restored on macOS when there is at least one remote file (closes #2030). commit 46910254564b39be76235b6d4037a0e0f50364ce Author: Alan Garny Date: Thu Mar 7 18:37:44 2019 +1300 Slight update to our downloads page (#2030). commit 8c60628a51a77d9b9e04f993a75631117d31c31d Author: Alan Garny Date: Thu Mar 7 18:34:34 2019 +1300 General: OpenCOR'\''s geometry is now properly restored on macOS when there is at least one remote file (#2030). commit 59ae8a04682b1b0740db223b6eb90c212726476b Author: Alan Garny Date: Thu Mar 7 17:57:20 2019 +1300 Some minor cleaning up. commit 5b2db996bbf2fe8393fc1bab04219908aae45495 Merge: 959737424 a914ece78 Author: Alan Garny Date: Thu Mar 7 17:28:38 2019 +1300 Merge pull request #2033 from agarny/issue2032 PMR Workspaces window: make sure that a folder is writable (closes #2032). commit a914ece785070b7ae1f6062b51973dfddd8d6167 Author: Alan Garny Date: Thu Mar 7 16:07:51 2019 +1300 Slight update to our downloads page (#2032). commit 6f6a4b43bd0be922d0aab73631dde13d5f29619f Author: Alan Garny Date: Thu Mar 7 16:00:37 2019 +1300 Have isDirectory() and isEmptyDirectory() check that a directory is writable (#2032). commit 6cbea0850cdc72d21d68258d07f7fe3c8a73c1aa Author: Alan Garny Date: Thu Mar 7 15:21:32 2019 +1300 Some minor cleaning up. commit 833670fa8e2523904fd284ae541a7e6135c6158e Author: Alan Garny Date: Thu Mar 7 15:20:51 2019 +1300 Let people know if we chose a folder that is not writable (#2032). commit f347dff49b49cb69d3151c47a1a28744e788a09f Author: Alan Garny Date: Thu Mar 7 14:03:42 2019 +1300 Have isDirectory() and isEmptyDirectory() check that a directory is writable (#2032). commit 95973742412c2cab506acd3be1ac06823127856e Merge: 7611fbcc8 5933f993e Author: Alan Garny Date: Thu Mar 7 11:42:25 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files (closes #2028). commit 5933f993eadd074afeededecd11039e17d435c2e Author: Alan Garny Date: Thu Mar 7 10:01:09 2019 +1300 Slight update to our downloads page (#2028). commit deb7e900282fa1a0ce51c111cab833014e79721e Author: Alan Garny Date: Thu Mar 7 09:59:57 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files (#2028). commit 7611fbcc8bd0674d008bab856322dec1c0c20825 Merge: a870b10c9 7d58dbac9 Author: Alan Garny Date: Thu Mar 7 09:28:04 2019 +1300 Some minor cleaning up. commit 7d58dbac9483f053a27caf907fd54adb728e7487 Author: Alan Garny Date: Thu Mar 7 08:57:12 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. That’s because we disable OpenCOR (when downloading a remote file), meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit aba3efab3839693f8fb0fc229546d6c4e9b0a7c9 Author: Alan Garny Date: Thu Mar 7 08:56:41 2019 +1300 Revert "Graph Panel widget: use original colours only if they have been set." This reverts commit 5059b54eb4859404936fdf2a25c70b2d4a11594b. commit 5059b54eb4859404936fdf2a25c70b2d4a11594b Author: Alan Garny Date: Thu Mar 7 08:55:23 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. That’s because we disable OpenCOR (when downloading a remote file), meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit 34df20bea38cb1e80e88c7274c0514d5283d234b Author: Alan Garny Date: Thu Mar 7 08:52:04 2019 +1300 SynchronousFileDownloader class: fixed a small memory leak. commit f11ff0cf8feb276a84cc9b2575940d74b2e6f922 Author: Alan Garny Date: Thu Mar 7 08:51:32 2019 +1300 Some minor cleaning up. commit b9791c378413546fa822498051d1c3fdfc38ca5a Author: Alan Garny Date: Thu Mar 7 08:49:56 2019 +1300 Some minor cleaning up. commit 7a8ddc9989d538df97a7e44bc485cabccb0529ba Author: Alan Garny Date: Thu Mar 7 08:49:40 2019 +1300 Some minor cleaning up. commit a870b10c95c5958ff0aa3210d5923176e767d427 Merge: 53d60e0ac 76caf82b9 Author: Alan Garny Date: Tue Mar 5 17:31:37 2019 +1300 New snapshot. commit 76caf82b96cf865b3eab27b885a66bc9bf51c4ac Merge: d6a8690fe 53d60e0ac Author: Alan Garny Date: Tue Mar 5 17:08:15 2019 +1300 Merge remote-tracking branch '\''opencor/master'\''. commit 53d60e0ac2dea4d93de30dae85808f3dfd33ba44 Merge: 60c09567a f92a2e0c8 Author: Alan Garny Date: Tue Mar 5 17:07:59 2019 +1300 Some minor cleaning up. commit d6a8690feaa4b08de969021d2babaf90d3183b98 Author: Alan Garny Date: Tue Mar 5 16:57:28 2019 +1300 New snapshot. commit f92a2e0c88cf5864155648a5fba94516c067945e Author: Alan Garny Date: Tue Mar 5 16:40:19 2019 +1300 Some minor cleaning up. commit e53cf8af1779784fc712e99333dc678e95ef748f Author: Alan Garny Date: Tue Mar 5 15:56:30 2019 +1300 Some minor cleaning up. commit 7890a50c89d9cb722bd4d539bb48cc73cf31fbfa Author: Alan Garny Date: Tue Mar 5 15:37:44 2019 +1300 PMR support: reset the contents of our web browser when reusing it. commit ec7dbd8759d7184e37ae4ed5b1f174829c461edf Author: Alan Garny Date: Tue Mar 5 15:29:08 2019 +1300 Some minor cleaning up. Put this piece of code where it used to be since it used to be working fine that way. commit 4e6e4308efbf77af2ca4bef1f3709453dade9222 Author: Alan Garny Date: Tue Mar 5 15:16:43 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct (and applied when we were connected to PMR). Yet, it'\''s better to set mInitialized in PmrWorkspacesWindowWindow::loadSettings() and check for it in PmrWorkspacesWindowWindow::busy(). commit 41f6d7f27322787c87f8c9d4b84851848ee191c1 Author: Alan Garny Date: Tue Mar 5 15:12:03 2019 +1300 Some minor cleaning up. commit 6722c611720ee301282d707f55ee7cff467538f9 Author: Alan Garny Date: Tue Mar 5 15:04:31 2019 +1300 Some minor cleaning up. commit 23ab11066bc9bfca9fc2274f604471e44c2d4ac9 Author: Alan Garny Date: Tue Mar 5 15:04:21 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct (and applied when we were connected to PMR). Yet, it'\''s better to set mInitialized in PmrWorkspacesWindowWindow::loadSettings() and check for it in PmrWorkspacesWindowWindow::busy(). commit 60c09567a028e54517c6480866562eec0767b764 Merge: 617817b71 e19a83854 Author: Alan Garny Date: Mon Mar 4 17:44:37 2019 +1300 Simulation Experiment view: make some widgets look properly disabled when they are (closes #2022). commit e19a83854690cfa572fd98cc2ffa5387c7e3a592 Author: Alan Garny Date: Mon Mar 4 17:22:23 2019 +1300 Slight update to our downloads page (#2022). commit 3550be10f6fbb4ff560c06e0e831b007ccf3a605 Author: Alan Garny Date: Mon Mar 4 17:11:09 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 33e6a5e2a550c857051a2cad382d6b8184793c45 Author: Alan Garny Date: Mon Mar 4 16:47:21 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 64191f6a3d7e028d76b7fce124c1c0a87e3a8684 Author: Alan Garny Date: Mon Mar 4 16:40:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 8c9c7c27238b27ec528dc7c382553d082c97676f Author: Alan Garny Date: Mon Mar 4 15:39:02 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit cfa0c36de1197a22ecf20ed85c48d1be19b545bb Author: Alan Garny Date: Mon Mar 4 15:22:11 2019 +1300 Some minor cleaning up. commit 8c42a54ac3ed1068a425f417b5790fa900fb92e3 Author: Alan Garny Date: Mon Mar 4 14:12:42 2019 +1300 Some minor cleaning up. commit 7e707cdd1165049bf9d4a1d17924cfdba0694fe8 Author: Alan Garny Date: Mon Mar 4 13:24:20 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 13bb03286628aad9cbacc5844d612483b76c3975 Author: Alan Garny Date: Mon Mar 4 13:20:18 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 61e9db65f7111d1eac1354a987331d264ff52131 Author: Alan Garny Date: Mon Mar 4 13:16:25 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 71f4d0ab6733712f610008ca50a26cf153e46eaf Author: Alan Garny Date: Mon Mar 4 13:15:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit ecd372efe6183bbe5c3d44defd2a8934c670bac8 Author: Alan Garny Date: Mon Mar 4 12:44:28 2019 +1300 Some minor cleaning up. commit c0b7cb0046907e5397979c524fdd9e152460697d Author: Alan Garny Date: Mon Mar 4 12:22:50 2019 +1300 Some minor cleaning up. commit e94e76f04ada110f135e17c7a151de7c3a71fa1c Author: Alan Garny Date: Mon Mar 4 12:22:34 2019 +1300 Graph Panel widget: the marker now looks fully disabled when it should be (#2022). commit f1925939eeb0c49e413c64f9b3313195fbf2c30e Author: Alan Garny Date: Mon Mar 4 11:22:49 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be (#2022). commit 603064c85cd2c25fc69325069434630f430e06df Author: Alan Garny Date: Mon Mar 4 10:46:31 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be (#2022). commit 617817b71d054ebf9b9e058ee5b1b1a89200ad20 Merge: ac9808fee b992c92b0 Author: Alan Garny Date: Mon Mar 4 09:40:11 2019 +1300 CSV data store: improved our detection of CSV files (closes #2019). commit b992c92b06d9c314213005759736942844b4664b Author: Alan Garny Date: Mon Mar 4 09:19:03 2019 +1300 CSV data store: improved our detection of CSV files (#2019). commit ac9808feed93bd8662f4de809c7926609d27b2cf Merge: cd842ab28 2c2b44813 Author: Alan Garny Date: Sat Mar 2 19:44:40 2019 +1300 CSV data store: improved our detection of CSV files (closes #2019). commit 2c2b4481305a4edb33be583ca55a1254443a51bb Author: Alan Garny Date: Sat Mar 2 19:25:54 2019 +1300 Slight update to our downloads page (#2019). commit 7323b57c8e5bbfe3ed25a67e8cc925fd67b1773f Author: Alan Garny Date: Sat Mar 2 19:12:01 2019 +1300 CSV data store: improved our detection of CSV files (#2019). commit 404b67f099065250d1c9e83b7ba7ad29b8ba8eb2 Author: Alan Garny Date: Sat Mar 2 19:09:47 2019 +1300 Some minor cleaning up. commit cd842ab285cea17bc52f89b62642ebbb98395a3e Merge: 74a9bfc5c af5468e74 Author: Alan Garny Date: Sat Mar 2 17:28:19 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit af5468e74615c9405c398c70de71533a947884a1 Author: Alan Garny Date: Sat Mar 2 16:33:08 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit 74a9bfc5c494202ef3590286b5c1860785daa6ad Merge: adf051735 2e8bec830 Author: Alan Garny Date: Fri Mar 1 19:45:01 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit 47481028594fa6be438298267d21ff57aaaa902a Merge: a7a4da910 adf051735 Author: Alan Garny Date: Fri Mar 1 18:40:31 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 2e8bec830409b7a3bf37ab777e774de133762966 Author: Alan Garny Date: Fri Mar 1 18:17:52 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit adf051735fce48f388041c8b0b6cded979b72666 Merge: 7f64eed2e 9eec930ed Author: Alan Garny Date: Fri Mar 1 16:09:41 2019 +1300 Some minor cleaning up. commit 9eec930ed78cbaf1e48d67069ddb283fa53445f5 Author: Alan Garny Date: Fri Mar 1 15:38:42 2019 +1300 Simulation Experiment view: make sure that we retrieve the value of a list property as a string. Indeed, this is what our solvers need to set themselves… See CvodeSolver::initialize() for example… commit c6ad1fbba98500c6ab043a81094868be62776ac1 Author: Alan Garny Date: Fri Mar 1 15:23:43 2019 +1300 Some minor cleaning up. commit 3f71cd67354afe9f7330acc335f1fe0bd4e370b5 Author: Alan Garny Date: Fri Mar 1 14:56:34 2019 +1300 Some minor cleaning up. commit 7f64eed2e88bdffd98c85b5dc0d364a5ff3288b9 Merge: 54a869e94 43fcc06ab Author: Alan Garny Date: Fri Mar 1 09:51:00 2019 +1300 KaTeX: upgraded to version 0.10.1 (closes #2014). commit 43fcc06ab03aaaac4950b71713438839a7320f52 Author: Alan Garny Date: Fri Mar 1 09:30:56 2019 +1300 Slight update to our downloads page (#2014). commit 54a869e94f901b7e085669c2483332cde7721641 Merge: 5911d5960 37f59d2ee Author: Alan Garny Date: Thu Feb 28 18:46:08 2019 +1300 URI scheme: added the `importFile` and `importFiles` commands (closes #2000). commit 37f59d2ee9330bd56b3f48da86a1018fe593f95c Author: Alan Garny Date: Thu Feb 28 18:28:36 2019 +1300 Some minor cleaning up. commit c31262f28aa393d122b089de7691daa1ab88f7c2 Author: Alan Garny Date: Thu Feb 28 18:17:16 2019 +1300 Slight update to our downloads page (#2000). commit be5315f77c97bce23b633cbbc352e730278815a6 Author: Alan Garny Date: Thu Feb 28 17:56:54 2019 +1300 Some minor cleaning up. commit fdc721d25c5d7165a8e61de963292f9fc8929c0b Author: Alan Garny Date: Thu Feb 28 17:49:52 2019 +1300 Can now import a remote file / some remote files (#2000). commit 90727ec533142c6653c431f410649a7224170ae1 Author: Alan Garny Date: Thu Feb 28 16:41:06 2019 +1300 Some minor cleaning up. commit 91aacd4ceafcc1ddc887a761b4d636325b1cd311 Merge: 6f783a9e1 d2dc0c815 Author: Alan Garny Date: Thu Feb 28 14:37:30 2019 +1300 Merge remote-tracking branch '\''origin/issue2000'\'' into issue2000 commit 6f783a9e10829dd18caaa7c25044688906910c4d Merge: f8028a73a 5911d5960 Author: Alan Garny Date: Thu Feb 28 14:35:11 2019 +1300 Merge branch '\''master'\'' into issue2000. commit 5911d5960d6cbf51dfaff38487aa24c513afeaa5 Merge: dba00265b 21e33f9d1 Author: Alan Garny Date: Thu Feb 28 14:16:42 2019 +1300 Some minor cleaning up. commit d2dc0c8152abc4beeb114ac3a598088b4bf0f5cc Author: Alan Garny Date: Thu Feb 28 11:50:43 2019 +1300 Some minor cleaning up. commit 21e33f9d18da17a8578ee8ef1eabaa1dc1e50d6f Author: Alan Garny Date: Thu Feb 28 11:49:41 2019 +1300 Simulation Experiment view: import files one after the other. Until now, we were importing in parallel, but this won’t work for issue #2000, so now do it one after the other. commit 97f19824dad16213d54f64c377a605cae8ebbf2f Author: Alan Garny Date: Thu Feb 28 11:20:12 2019 +1300 Some minor cleaning up. commit d072576e5ee90da1d9570606979b5c47934f249e Author: Alan Garny Date: Thu Feb 28 10:59:10 2019 +1300 Some minor cleaning up. commit 06c611a0ec4399d16ad348d29843e418fdaf0f94 Author: Alan Garny Date: Thu Feb 28 10:58:53 2019 +1300 Some minor cleaning up. commit f4dc8519a21a41e6f07b26e01a422908173d1183 Author: Alan Garny Date: Thu Feb 28 10:58:37 2019 +1300 Some minor cleaning up. commit 563eaa790882ae359243f411df7ae136c3a66ff2 Author: Alan Garny Date: Thu Feb 28 10:58:14 2019 +1300 Some minor cleaning up. commit 3739957d3fc6ff519445472fe0f4fdcd45b8f37a Author: Alan Garny Date: Thu Feb 28 10:14:06 2019 +1300 Some minor cleaning up. mViews is not used as such, so no point in keeping it. As a result, we can also remove viewKey(). commit d25bf0fcd6879d288a71f049497d0966ec856d30 Author: Alan Garny Date: Thu Feb 28 10:13:12 2019 +1300 Some minor cleaning up. commit 5ed9b0e529d21fa62928bb0d968358832d61f751 Author: Alan Garny Date: Thu Feb 28 10:12:52 2019 +1300 Some minor cleaning up. commit 9e8727e9fc2e09001c70dcc845c2095ed0111eaf Author: Alan Garny Date: Thu Feb 28 10:12:31 2019 +1300 Some minor cleaning up. commit 6609d5537ee0a8d782f41e5e243922ec9b472821 Author: Alan Garny Date: Thu Feb 28 10:09:08 2019 +1300 Some minor cleaning up. commit 00a16b11b28692a784063774118ca91999dda88c Author: Alan Garny Date: Thu Feb 28 10:08:54 2019 +1300 Core interface: renamed handleArguments() to openFile(). Indeed, to handle arguments effectively results into opening files, so… commit f8028a73a7e3951e6732b51d0ed3db600d0a431a Merge: 0744b742c dba00265b Author: Alan Garny Date: Wed Feb 27 18:33:24 2019 +1300 Merge branch '\''master'\'' into issue2000. commit dba00265b5b0ef59a27fe764d1705504c88df24c Merge: fbd7917b6 235a1d4bc Author: Alan Garny Date: Wed Feb 27 18:32:39 2019 +1300 OpenSSL: upgraded to version 1.0.2r (closes #2009). commit 235a1d4bc2ddf873c6c550fbd0d3247d5033e748 Author: Alan Garny Date: Wed Feb 27 18:16:07 2019 +1300 Slight update to our downloads page (#2009). commit 4b76ebc0817b8b7862f064c464d711d5b6d02dce Author: Alan Garny Date: Wed Feb 27 18:15:00 2019 +1300 OpenSSL: binaries for version 1.0.2r (#2009). commit 43a5dc27627856d57d9b5d3571e28bb7245bdc39 Author: Alan Garny Date: Wed Feb 27 18:01:13 2019 +1300 Revert "Only build OpenSSL (#2009)." This reverts commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd. commit d3c361c6a7e99d39ee96f2123ce7cfba80bfa1fa Author: Alan Garny Date: Wed Feb 27 17:43:57 2019 +1300 OpenSSL: upgraded to version 1.0.2r (#2009). commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd Author: Alan Garny Date: Wed Feb 27 17:43:04 2019 +1300 Only build OpenSSL (#2009). commit 0744b742cdf3abf4f2749d496cbb39619099d9b0 Author: Alan Garny Date: Wed Feb 27 17:31:51 2019 +1300 Merge branch '\''master'\'' into issue2000. commit 5341b55f5f516c52dd19ab0fd0fba6b127dfaccd Merge: 412a9cf17 fbd7917b6 Author: Alan Garny Date: Wed Feb 27 17:25:50 2019 +1300 Merge branch '\''master'\'' into issue2000. commit fbd7917b6c59d3c56456b5fce6e9a9aaa32ea995 Merge: ed60768e0 15c19df28 Author: Alan Garny Date: Wed Feb 27 17:07:33 2019 +1300 A lot of (minor) cleaning up. commit 15c19df2814ef19b7c54f5b32c1f65add7ee5e46 Author: Alan Garny Date: Wed Feb 27 16:31:06 2019 +1300 Some minor cleaning up. commit c186ee7a4ba8e3e1ad8f33b828af9aafdc85e456 Author: Alan Garny Date: Wed Feb 27 16:08:58 2019 +1300 Some minor cleaning up. commit 3e2057ff0e06499165591dd46b8a01dc0618f9c3 Author: Alan Garny Date: Wed Feb 27 16:00:22 2019 +1300 Some minor cleaning up. commit 33b15170900a97299cab6ee35e1cdc4e5c96bbe6 Author: Alan Garny Date: Wed Feb 27 15:42:37 2019 +1300 Some minor cleaning up. Finally able to minimise our Dialog class to the bare minimum (now that all our Dialog-derived classes are doing things right with regards to QSettings)! commit dfd31d75982e3aea0f3fb02394098c5070aa835a Author: Alan Garny Date: Wed Feb 27 15:25:17 2019 +1300 PMR support: now have a dedicated PmrWebViewerDialog class. commit d1b6d04c3f83dc824e4374c9890ffe9808a39b71 Author: Alan Garny Date: Wed Feb 27 11:01:15 2019 +1300 Core plugin: now have a dedicated RemoteFileDialog class. The idea is two-fold. First, we want to be able to reuse that dialog (e.g. in issue #2000) and, second, we want to improve our use of QSettings. commit 24db0db87f868dc98eb1508f5bdf1bd01b632004 Author: Alan Garny Date: Wed Feb 27 09:45:24 2019 +1300 Some minor cleaning up. commit 499b07c6531b80eb8d2bb1484a03188965d8eb93 Author: Alan Garny Date: Wed Feb 27 09:41:47 2019 +1300 Some minor cleaning up. commit 422d82c355b1be0faa91539127a9eed3093d6d85 Author: Alan Garny Date: Tue Feb 26 19:02:43 2019 +1300 PMR Workspaces window: slight improvement. commit f3cdcd55cc4ef92fdd47e4ffaa66f732dea2d0c4 Author: Alan Garny Date: Tue Feb 26 18:15:28 2019 +1300 Some minor cleaning up. commit 7e54d4dcc6ea57db2c3fc74795d3889e807373cc Author: Alan Garny Date: Tue Feb 26 18:09:50 2019 +1300 Some minor cleaning up. commit cd428fbc270ae1eaff88165d3e8c7ddb7b2bfcf2 Author: Alan Garny Date: Tue Feb 26 18:06:17 2019 +1300 Some minor cleaning up. commit 7ac677027a179c20de738eb12c54cb734548c932 Author: Alan Garny Date: Tue Feb 26 17:54:26 2019 +1300 Some minor cleaning up. commit 64c797aa3f601af616a6f8071de2b40b909b154a Author: Alan Garny Date: Tue Feb 26 17:42:04 2019 +1300 Some minor cleaning up. commit cb79808f45e17faed040b09ddbae9540acfdb407 Author: Alan Garny Date: Tue Feb 26 17:14:44 2019 +1300 Some minor cleaning up. commit 1993fae7ed798ed2d54ea1e9a2e5419f578ad5c3 Author: Alan Garny Date: Tue Feb 26 17:04:07 2019 +1300 Some minor cleaning up. commit 35b155c80a724c92f9521dee95d4854ca68a3e61 Author: Alan Garny Date: Tue Feb 26 16:32:39 2019 +1300 Slight improvement to our Plugin interface. commit a3918ae74c39c3e8b53508283de464b370633373 Author: Alan Garny Date: Tue Feb 26 16:22:05 2019 +1300 Some minor cleaning up. commit 41c4d9c5ad9222d6fa9d95f900ee17719531a170 Author: Alan Garny Date: Tue Feb 26 16:18:21 2019 +1300 Some minor cleaning up. commit ee07d92d7c0448341be760f65583a4e2980e1706 Author: Alan Garny Date: Tue Feb 26 14:18:27 2019 +1300 Some minor cleaning up. commit 43ea03aaed85164b26f32cd0af417a6e2851fb17 Author: Alan Garny Date: Tue Feb 26 14:07:13 2019 +1300 Some minor cleaning up. commit 7b68d5d29cde0773561fb09f2321b34ab2e02d6c Author: Alan Garny Date: Tue Feb 26 14:04:53 2019 +1300 Some minor cleaning up. commit ab9ffa532bc9c7764764637427a2f57b3dfaab2d Author: Alan Garny Date: Tue Feb 26 14:00:04 2019 +1300 Some minor cleaning up. commit 033db16222b18cb0224e58c5e51fa50656d4421f Author: Alan Garny Date: Tue Feb 26 13:59:47 2019 +1300 Some minor cleaning up. commit 412a9cf178e63d52c5f94c717f48113a5f5abdaa Merge: dfa64d78f ed60768e0 Author: Alan Garny Date: Tue Feb 26 09:58:10 2019 +1300 Merge branch '\''master'\'' into issue2000. commit ed60768e0087185265209baec912eab7689b18df Merge: ed512790b ea3014f56 Author: Alan Garny Date: Tue Feb 26 09:56:31 2019 +1300 Some minor cleaning up. commit ea3014f56ddad17def52b6c10a1cc013c44f0516 Author: Alan Garny Date: Tue Feb 26 09:37:54 2019 +1300 Some minor cleaning up. commit dfa64d78f289f90af5922807ea90629d1e1ab7d8 Author: Alan Garny Date: Mon Feb 25 18:42:11 2019 +1300 Some minor cleaning up. commit e5905d995f5b894c3a38ed49b9c9a6018e3e316c Author: Alan Garny Date: Mon Feb 25 18:03:08 2019 +1300 Made our Open Remote File dialog generic (#2000). commit e45beb7ab4a3f063e3ac5310d46a08f0e667fa41 Merge: 28cf9a1cd ed512790b Author: Alan Garny Date: Mon Feb 25 17:45:14 2019 +1300 Merge branch '\''master'\'' into issue2000. commit ed512790b9eb35b99aecebd1301b95479470e77f Merge: cba61001d 4483b317e Author: Alan Garny Date: Mon Feb 25 17:44:25 2019 +1300 Some minor cleaning up. commit 4483b317e74a84d8431ecd3385c3c06562e6d166 Author: Alan Garny Date: Mon Feb 25 17:22:48 2019 +1300 Some minor cleaning up. commit 28cf9a1cd39e4bc4733f1630fd1f6d002972bbe9 Merge: 282ed6610 cba61001d Author: Alan Garny Date: Mon Feb 25 17:10:42 2019 +1300 Merge branch '\''master'\'' into issue2000. commit cba61001de4ef6aee7d82093f44b6e4e07b45f7f Merge: cfe005cea e0b62a74f Author: Alan Garny Date: Mon Feb 25 17:09:17 2019 +1300 Some minor cleaning up. commit e0b62a74f494ccd48d2e574d7d3cf63aa5bee1d3 Author: Alan Garny Date: Mon Feb 25 16:51:41 2019 +1300 Some minor cleaning up. commit edb73d790facce312a5383fe1bfea4bed0e85424 Author: Alan Garny Date: Mon Feb 25 16:30:12 2019 +1300 Some minor cleaning up. commit f9b104bd6ba3a3f862f2ec68c172305c5d7a2f39 Author: Alan Garny Date: Mon Feb 25 16:17:47 2019 +1300 PMR Workspaces window: simplified our use of QSettings for our diff dialog. commit 6a5151fd68bee74420fe2b0758d695173b0c6465 Author: Alan Garny Date: Mon Feb 25 15:50:33 2019 +1300 Data store based dialogs: simplified our use of QSettings. commit 282ed6610c20f74a27b8c24422f50a7e6c2f25c5 Merge: ca5ce3fb6 cfe005cea Author: Alan Garny Date: Mon Feb 25 12:57:19 2019 +1300 Merge branch '\''master'\'' into issue2000. commit cfe005ceaa4fce8fd64746d30349521fa0fca12e Merge: 0ffded4cf 6f8812fbd Author: Alan Garny Date: Mon Feb 25 12:56:37 2019 +1300 Some minor cleaning up. commit 6f8812fbd4f9c159ba0ab1c633754ffd0d4a0297 Author: Alan Garny Date: Mon Feb 25 11:57:05 2019 +1300 BioSignalML data store: open BioSignalML files in read-only mode unless we need to create/update them. This is particularly import for BioSignalMLDataStorePlugin::isFile() since calling bsml::HDF5::Recording() in read-write mode will eventually result in the BioSignalML file being modified (when we delete the recording). In turn, this means that its SHA-1 value will be different, resulting in OpenCOR telling us that the BioSignalML file has been modified while it actually hasn’t been. commit 629cf2a6a1b76c0077654703af0f24d6af83d12d Author: Alan Garny Date: Mon Feb 25 10:46:25 2019 +1300 Some minor cleaning up. commit 2c291865e28814731f340fb78f8f83a5ff7fbc42 Author: Alan Garny Date: Mon Feb 25 10:17:51 2019 +1300 Some minor cleaning up. commit ca5ce3fb625d1034b0264c5f133d9afc41428292 Merge: 0625d3a93 0ffded4cf Author: Alan Garny Date: Sat Feb 23 10:51:05 2019 +1300 Merge branch '\''master'\'' into issue2000. commit 0ffded4cfda069e182d8eceacd63312c62e5fe73 Merge: ba9fba3ae 2d89847e8 Author: Alan Garny Date: Sat Feb 23 10:50:21 2019 +1300 Some minor cleaning up. commit 2d89847e8a89f7d4cbb9c0292cf3f347e5f84030 Author: Alan Garny Date: Sat Feb 23 10:28:46 2019 +1300 Slight improvement to our fileSha1() method. commit 9b9212ba980b978f1f380d69a0ec91df0d7d9b13 Author: Alan Garny Date: Sat Feb 23 10:13:44 2019 +1300 Slight improvement to our fileSha1() method. commit 55134b621e5d2d406fd7a04847b10f2c873d4fd8 Author: Alan Garny Date: Sat Feb 23 10:13:15 2019 +1300 Some minor cleaning up. commit 0625d3a93047cba2f9e242da771dcc713282cfd2 Merge: c34ad6165 ba9fba3ae Author: Alan Garny Date: Fri Feb 22 18:56:22 2019 +1300 Merge branch '\''master'\'' into issue2000. commit ba9fba3ae782a65359510fc4afd859d9bfbcdce3 Merge: 786b0cc42 ba207a088 Author: Alan Garny Date: Fri Feb 22 18:41:44 2019 +1300 Improved our computation of the SHA-1 value of a file. commit ba207a088dfadd3d71e56b10bf6ecaea165b10c8 Author: Alan Garny Date: Fri Feb 22 16:10:33 2019 +1300 Improved our computation of the SHA-1 value of a file. commit c34ad6165f3bbd38c5ee8da6189785ae0237758e Merge: 559e83f0a 786b0cc42 Author: Alan Garny Date: Fri Feb 22 13:15:44 2019 +1300 Merge branch '\''master'\'' into issue2000. commit 786b0cc42b023ac7a7c34c0ca93789b61166513c Merge: d1c5a06f4 aeae3b13e Author: Alan Garny Date: Fri Feb 22 13:13:19 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages (closes #2001). commit 559e83f0a677dc6845bf48beb1dffbb1a4940ec7 Author: Alan Garny Date: Fri Feb 22 13:04:32 2019 +1300 Some minor cleaning up. commit c5112eff5eaf64002a93c39d2f8df1a80108d890 Author: Alan Garny Date: Fri Feb 22 12:50:06 2019 +1300 Some minor cleaning up. commit aeae3b13ebfd5cff65edb7000f1ff9ea07c2fdae Author: Alan Garny Date: Fri Feb 22 12:30:50 2019 +1300 Some minor cleaning up. commit 0956211763398784d829ac8bda82dfe7b81158b4 Author: Alan Garny Date: Fri Feb 22 12:29:50 2019 +1300 Slight updates to our downloads and what is new pages (#2000). commit b0fb49894bc6a748ff7f76fc7111f615eab7c489 Author: Alan Garny Date: Fri Feb 22 12:19:24 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages (#2001). commit ca3fcaf5b288ebd23626c4f01b2092812637ae52 Author: Alan Garny Date: Fri Feb 22 11:29:00 2019 +1300 Simulation Experiment view: now have a drop-down menu to import either local or remote data files (#2000). commit 1e77155ed3eb616498e6e00d66145ef058d65602 Author: Alan Garny Date: Fri Feb 22 10:59:48 2019 +1300 Some minor cleaning up. commit 942f8a5758deb38559fbd921630c87f0509b9239 Author: Alan Garny Date: Fri Feb 22 10:58:58 2019 +1300 Revert "Some minor cleaning up." This reverts commit cdcb637b04b137df3c4bbb9000d20e018e988159. commit cdcb637b04b137df3c4bbb9000d20e018e988159 Author: Alan Garny Date: Fri Feb 22 10:57:22 2019 +1300 Some minor cleaning up. commit e7faa3ce0595994f4ee4ca618349e066425426de Author: Alan Garny Date: Fri Feb 22 10:19:26 2019 +1300 Simulation Experiment view: don'\''t generate a warning if we try to drop a non-data file on our view (#2000). commit b27c7fbefcf1fd96595dd873adf3a65a5a05f7f5 Author: Alan Garny Date: Thu Feb 21 13:50:31 2019 +1300 Some minor clarifications. Re the data store importer/exporter, if we were not to pass Qt::UniqueConnection, then if we want to import n signals, then the first time we would do that, we would indeed get n signals imported, but the second time we would get 2n of them, the third time 3n, etc. hence the need to pass Qt::UniqueConnection. commit ecde31758d01666dd1efa387d08fb9d3e2801b5b Author: Alan Garny Date: Thu Feb 21 08:26:13 2019 +1300 Revert "Some minor cleaning up." This reverts commit a3c5d1496cdbb83b8e89169283434cda8b18abcd. commit 3dc5e8939cd3cc4c22f1e22ed26239bdaf5a38e9 Author: Alan Garny Date: Wed Feb 20 18:53:56 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 8590dfad153b6ae66ce62b8d5a0aad296cd9fe11 Author: Alan Garny Date: Wed Feb 20 18:46:03 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 1c60f14a497cc701369eebd950f8d2b735dcb3a6 Author: Alan Garny Date: Wed Feb 20 18:36:09 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 59e5a82f4b95e99d6249ffb1435d0ca169f31484 Author: Alan Garny Date: Wed Feb 20 18:27:03 2019 +1300 Common widget: move some methods to the public slots section. commit bced9ca0274b2b49c3aca99668edcceb69f0e45f Author: Alan Garny Date: Wed Feb 20 18:12:43 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit a3c5d1496cdbb83b8e89169283434cda8b18abcd Author: Alan Garny Date: Wed Feb 20 18:12:28 2019 +1300 Some minor cleaning up. commit 7a20b5827daca511492b34c8a759665d409e1162 Author: Alan Garny Date: Wed Feb 20 17:59:49 2019 +1300 Some minor cleaning up. commit 23be390f9ab0ccdb828f8983c0adc8e913b0f536 Author: Alan Garny Date: Wed Feb 20 17:53:16 2019 +1300 Some minor cleaning up. commit 5eab6b1dc7c53f84ba882ff1c58431ea51c11631 Author: Alan Garny Date: Wed Feb 20 17:51:40 2019 +1300 Some minor cleaning up. commit 32d8e150a6806f7cb7dc69528d3e5c183ad5b91a Author: Alan Garny Date: Wed Feb 20 17:46:55 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit c4813e38c6e391095424a0bb1f795784907caa59 Author: Alan Garny Date: Wed Feb 20 16:55:38 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 94ce0757902dbd5f15ac637195b577b250e9826d Author: Alan Garny Date: Wed Feb 20 16:45:13 2019 +1300 Simulation Experiment: can import one file at a time using our new URI scheme `importFile` command (#2000). commit 59140f0f2ebe7fdbdb23d7379c77db9662481977 Author: Alan Garny Date: Wed Feb 20 16:42:57 2019 +1300 Some minor cleaning up. commit 17f0ed6a663468213cf4005e6e77f62f49cf3bb2 Author: Alan Garny Date: Wed Feb 20 15:14:16 2019 +1300 Central widget: ask the current view to import a given file or, failing that, open it as a normal file (#2000). commit d11773c99da31ffec6d50c1e0f1af84e9ad1ed21 Author: Alan Garny Date: Wed Feb 20 14:49:17 2019 +1300 Central widget: some minor cleaning up. We don’t make use of mViews (anymore?), so no point in still using it. Then, as a result, we don’t need viewKey() anymore either. commit 4c645beee3b3acfd983db84b41949a291e29ef28 Author: Alan Garny Date: Wed Feb 20 14:38:38 2019 +1300 Core plugin: forward to our central widget our wish to import a file (#2000). commit f38b79e1ad45182bfc182ca6bfc22172abefc972 Author: Alan Garny Date: Wed Feb 20 14:33:58 2019 +1300 Some minor cleaning up. commit a234a23bfd099fcb368679a229696f0046d57d3d Author: Alan Garny Date: Wed Feb 20 14:21:28 2019 +1300 Main window: added support for the `importFile` and `importFiles` URI scheme commands (#2000). commit 74d2f11569e16a1aba3ffec48db92feb142e5d1f Author: Alan Garny Date: Wed Feb 20 13:22:17 2019 +1300 Core interface: renamed `handleArguments()` to `openFile()` (#2000). Indeed, the only arguments that our Core plugin should handle are file names to open, so… commit b33675b6bb48803ec85c228e89b9e7b964c63145 Author: Alan Garny Date: Wed Feb 20 11:30:12 2019 +1300 Some minor cleaning up. commit 628a4ecc7a731613c2f0b1915e7ac0bcc6fae5a5 Author: Alan Garny Date: Wed Feb 20 10:25:23 2019 +1300 Some minor cleaning up. commit 2e61f6798978e6c5a9a956951c009a27debf43e6 Author: Alan Garny Date: Wed Feb 20 09:59:57 2019 +1300 File Handling interface: added a new importFile() method (#2000). commit d1c5a06f4a46b568b45889c15c99843e451b779b Merge: 104887509 1f7667da0 Author: Alan Garny Date: Tue Feb 19 20:57:59 2019 +1300 Slight update to our downloads page (#1991). commit 1f7667da0aaba974c9bf4716e6f2c98e10d35392 Author: Alan Garny Date: Tue Feb 19 19:32:10 2019 +1300 Slight update to our downloads page (#1991). commit 104887509502e54df9c163fa7cd37dadffdbd529 Merge: d1bd9cb5c 71dc6870b Author: Alan Garny Date: Tue Feb 19 19:22:28 2019 +1300 libgit2: upgraded to version 0.28.1 (closes #1993). commit 71dc6870bc71e07442bac70773200f9f8ee0eb86 Author: Alan Garny Date: Tue Feb 19 19:05:04 2019 +1300 PMR support: use new libgit2 constants/methods (#1993). commit 8aa576318e20711338084d9411a07b93f1f4dc7b Author: Alan Garny Date: Tue Feb 19 18:56:51 2019 +1300 Don'\''t only build libgit2 (#1993). commit 834017ed35aff6f644e672de88356f1836490b9d Author: Alan Garny Date: Tue Feb 19 18:56:08 2019 +1300 Slight update to our downloads page (#1993). commit 67f594664451993f03feb5391b0cbefc3f1a4502 Author: Alan Garny Date: Tue Feb 19 18:55:42 2019 +1300 libgit2: binaries for version 0.28.1 (#1993). commit e2a4e980f659ecc2e5512f1adad6ded33423ae94 Author: Alan Garny Date: Tue Feb 19 18:52:05 2019 +1300 libgit2: make sure that OpenSSL can be found on Linux (#1993). commit 64012a1aa336ec8d2d6387c9cf5282a08976e17b Author: Alan Garny Date: Tue Feb 19 18:09:55 2019 +1300 Only build libgit2 (#1993). commit 8445d4f8f24a7d33dc137f95aba002bc33ebb5a7 Author: Alan Garny Date: Tue Feb 19 18:06:58 2019 +1300 libgit2: upgraded to version 0.28.1 (#1993). commit bf9e8d40ec224cdee7ed725490b0ea6d47deebe7 Author: Alan Garny Date: Tue Feb 19 18:05:55 2019 +1300 Only build libgit2 (#1993). commit d1bd9cb5c26499a4e490324a0f9472c2ae14c15f Merge: 8878e9c8b aea623ff1 Author: Alan Garny Date: Tue Feb 19 17:43:49 2019 +1300 SUNDIALS: upgraded to version 4.1.0 (closes #1995). commit aea623ff1dd17fb9757839465cf7b75a20d736e0 Author: Alan Garny Date: Tue Feb 19 17:27:20 2019 +1300 Slight update to our downloads page (#1995). commit d122b55740013932bb9f5f008afd8e0413507c6d Author: Alan Garny Date: Tue Feb 19 17:26:45 2019 +1300 Don'\''t only build the SUNDIALS library (#1995). commit 15e3176ea7c732ec84649ef6ae71441e450243ea Author: Alan Garny Date: Tue Feb 19 17:26:15 2019 +1300 SUNDIALS: binaries for version 4.1.0 (#1995). commit 49ec40abc14bf58a2f6c6c61b00ec05ae1caf6ca Merge: 8fb0c2f39 8878e9c8b Author: Alan Garny Date: Tue Feb 19 17:18:18 2019 +1300 Merge branch '\''master'\'' into issue1995. commit 8878e9c8b186c2cbf7be423c021e0dcf7175e23e Merge: 5c26efb22 4e1c25df4 Author: Alan Garny Date: Tue Feb 19 17:16:19 2019 +1300 Mesa: upgraded to version 18.3.4 (closes #1994). commit 8fb0c2f390264f06cf77a9303d5cdbfe3e8cc8d3 Author: Alan Garny Date: Tue Feb 19 17:12:50 2019 +1300 SUNDIALS: upgraded to version 4.1.0 (#1995). commit d91202f07430b52cc1cdd66ccb9eeac2a78fea80 Author: Alan Garny Date: Tue Feb 19 17:10:14 2019 +1300 Only build the SUNDIALS library (#1995). commit 972e3caadf8d1e61c63b7c89b61988f1d6cb87a7 Author: Alan Garny Date: Tue Feb 19 17:08:57 2019 +1300 Only build the SUNDIALS library (#1995). commit 4e1c25df49ad9290f9bdd9ccd8af3497a3e0502f Author: Alan Garny Date: Tue Feb 19 17:00:38 2019 +1300 Slight update to our downloads page (#1994). commit 29dd19fedf6f8fb47e0336b381a99b5f5bf853ae Author: Alan Garny Date: Tue Feb 19 16:58:37 2019 +1300 Revert "Only build our Mesa library (#1994)." This reverts commit 6050981aed9a35bfbe04767d48ed942b0e833db0. commit 239c47537b6d830937a8cf252dbf1d977ce23b5d Author: Alan Garny Date: Tue Feb 19 16:57:46 2019 +1300 Mesa: binary for version 18.3.4 (#1994). commit ebc4fa545563862c17b0b5ba18a93fd0bdcf1c31 Author: Alan Garny Date: Tue Feb 19 16:52:18 2019 +1300 Mesa: upgraded to version 18.3.4 (#1994). commit 6050981aed9a35bfbe04767d48ed942b0e833db0 Author: Alan Garny Date: Tue Feb 19 16:51:06 2019 +1300 Only build our Mesa library (#1994). commit 5c26efb22c30b45883791aad125e4be8c17ed0fc Merge: 20ef2237b 9a9a614a0 Author: Alan Garny Date: Tue Feb 19 16:34:33 2019 +1300 macOS: now enforce the use of Light Mode (closes #1991). commit 9a9a614a08dc75b9807150ab5fce101150c0b091 Author: Alan Garny Date: Tue Feb 19 16:18:09 2019 +1300 macOS: enforce the use of Light Mode (#1991). commit 20ef2237b12f5185a25b2124dd64229b9b63474c Merge: 53d046177 997f91360 Author: Alan Garny Date: Tue Feb 19 14:28:45 2019 +1300 Some minor cleaning up. commit 997f913603b6a7523714d66061f945200f393f06 Author: Alan Garny Date: Tue Feb 19 13:30:55 2019 +1300 Some minor cleaning up. commit 53d0461770632e4cc80f17b9aecd72ed90e7ef70 Merge: 496f7c1c1 1b8abf368 Author: Alan Garny Date: Mon Feb 18 11:03:23 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. commit 1b8abf3687036a48e380b63b5801fe5cb7c4633f Author: Alan Garny Date: Mon Feb 18 10:46:49 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. Indeed, we are not planning on planning on having Objective-C code in it anymore. commit 496f7c1c1c4fe72eb01aad7d8aea0cb754f494a8 Merge: 267daa4df 9f1bb15ab Author: Alan Garny Date: Sun Feb 17 12:03:09 2019 +1300 Some minor cleaning up. commit 9f1bb15abe901983ffb9baf10a967619c008f4c9 Author: Alan Garny Date: Sun Feb 17 11:47:35 2019 +1300 Some minor cleaning up. commit 6d6dfccb512025f791f3fcca42d736290d78ca02 Author: Alan Garny Date: Sun Feb 17 10:47:20 2019 +1300 Some minor cleaning up. commit 267daa4dfc6c219f9003387786ea7a27a6674a39 Merge: c61754b6f 455df5ff3 Author: Alan Garny Date: Sat Feb 16 15:49:54 2019 +1300 Some minor cleaning up. commit 455df5ff367c6ea198d34f87a1aae291bf9f89d5 Author: Alan Garny Date: Sat Feb 16 15:23:09 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit 312bb7d48a1b85b0f21ad2c0b16809f93ca5082d Author: Alan Garny Date: Sat Feb 16 15:19:02 2019 +1300 Some minor cleaning up. commit 129023ba821d1ba285cb3dce7e22a7c36ce5d793 Author: Alan Garny Date: Sat Feb 16 15:15:00 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit c61754b6f31b50bb020c19a22a7870929ea7217c Merge: d59e21f37 1f9a18cdc Author: Alan Garny Date: Sat Feb 16 00:58:42 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. commit 1f9a18cdc0f2ddaa6cf7358a6f0b8c91ab3ac878 Author: Alan Garny Date: Sat Feb 16 00:41:52 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. Indeed, when calling QWidget::setStyle(), the ownership of the style object is not transferred, so we must therefore delete it ourselves. commit d59e21f37cbfafd52983b8b68d1bb85dfd047140 Merge: aec49f145 65b79663f Author: Alan Garny Date: Fri Feb 15 18:24:32 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 65b79663f7613ad5d88c4e62313511d018536ce6 Author: Alan Garny Date: Fri Feb 15 16:23:58 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 52773f2db020f89e428234a9e62029edfed72057 Author: Alan Garny Date: Fri Feb 15 16:19:29 2019 +1300 Some minor cleaning up. commit aec49f145a381c29ef94c7bf69522254aa1104d4 Merge: 3b876f256 e99fd3c09 Author: Alan Garny Date: Fri Feb 15 10:11:46 2019 +1300 QScintilla: upgraded to version 2.11.1 (closes #1983). commit e99fd3c097f5affddf02072f56054b53617860d4 Author: Alan Garny Date: Fri Feb 15 09:56:05 2019 +1300 QScintilla support: get things to build fine on Windows (#1983). commit c8f8c5eda8937e301399ca68ee90734598e7405e Author: Alan Garny Date: Fri Feb 15 09:33:22 2019 +1300 Revert "Only build the QScintilla library (#1983)." This reverts commit e9bfa6ef35defdcde88ee2d5898b74580f086058. commit 30a7126da123958c29fd0b92351a2e18db758a0a Author: Alan Garny Date: Fri Feb 15 09:32:43 2019 +1300 Slight update to our downloads page (#1983). commit 61456121eafdbdbf9b27e7ed99a209cb1fd2b07d Author: Alan Garny Date: Fri Feb 15 09:32:15 2019 +1300 QScintilla: binaries for version 2.11.1 (#1983). commit d6b5f90fd2761947b6873b9541ff357223b1f0c5 Author: Alan Garny Date: Fri Feb 15 09:24:32 2019 +1300 QScintilla: upgraded to version 2.11.1 (#1983). commit e9bfa6ef35defdcde88ee2d5898b74580f086058 Author: Alan Garny Date: Fri Feb 15 09:18:50 2019 +1300 Only build the QScintilla library (#1983). commit 3b876f25601a591535a1ec4d273d5f37aeaa17cb Merge: 4561bd1b1 a9a8b857b Author: Alan Garny Date: Thu Feb 14 17:55:31 2019 +1300 Some minor cleaning up. commit a9a8b857b4d24ebcee135e72ff04edf24c4006a5 Author: Alan Garny Date: Thu Feb 14 17:06:45 2019 +1300 Some minor cleaning up. commit 4561bd1b13f69ff4c45119049bbabfecafbbd8c3 Merge: a40c096ce 80b1da497 Author: Alan Garny Date: Thu Feb 14 17:00:01 2019 +1300 Some minor cleaning up. commit 80b1da497c8b8e585bd17909d24bb7b14efebb1f Author: Alan Garny Date: Thu Feb 14 16:20:24 2019 +1300 Some minor cleaning up. commit 9da92ea67baa8a6b13f5cad80ea1a49fa3161495 Author: Alan Garny Date: Thu Feb 14 16:14:11 2019 +1300 Some minor cleaning up. commit a40c096ced0d3fdf410f40a0cee5a851ee76ac83 Merge: 533eac372 d42716dac Author: Alan Garny Date: Wed Feb 13 12:55:05 2019 +1300 Some minor cleaning up. commit d42716dac9057ef220c5b6e85487347c5b07dba2 Author: Alan Garny Date: Wed Feb 13 12:25:39 2019 +1300 Some minor cleaning up. commit 533eac37214095a78b05dd9cf37243f8d9c83193 Merge: b5bcb8633 7d60973ab Author: Alan Garny Date: Wed Feb 13 12:10:44 2019 +1300 Made our `tintedIcon()` method more generic. commit 7d60973ab97dea3c01f341aab4d1f7f70efee194 Author: Alan Garny Date: Wed Feb 13 11:50:10 2019 +1300 Made our `tintedIcon()` method more generic. commit a781288616eac8a25df190b70c96582aa07dd573 Author: Alan Garny Date: Wed Feb 13 11:40:47 2019 +1300 Some minor cleaning up. commit b5bcb86331ac2177306db77d9cba15a5d5bf7603 Merge: 820e8d647 273d4dffa Author: Alan Garny Date: Wed Feb 13 09:10:30 2019 +1300 Some minor cleaning up. commit 273d4dffa1f2ac8bad04772a18eddbbb435a5c5c Author: Alan Garny Date: Wed Feb 13 08:44:48 2019 +1300 Removed unnecessary `newLineWidget()` methods. commit ff28fd5ee6f4225c299d7f87211a7453bac10ffb Author: Alan Garny Date: Wed Feb 13 08:44:12 2019 +1300 Some minor cleaning up. commit 2b408d50e034715235453dc547cc666a92af2da3 Author: Alan Garny Date: Wed Feb 13 08:43:35 2019 +1300 Some minor cleaning up. commit 666a725639597071d827effbfa52529f0d3e04ca Author: Alan Garny Date: Wed Feb 13 08:43:10 2019 +1300 Some minor cleaning up. commit fcd4c46fba81ad83c10b26d2c2146a3ef2678186 Author: Alan Garny Date: Wed Feb 13 08:42:52 2019 +1300 Some minor cleaning up. commit 8a73a05cff2522602ac55cbc3cad633af73f4eb5 Author: Alan Garny Date: Wed Feb 13 08:42:27 2019 +1300 Some minor cleaning up. commit 27712648195e2d6407be93badbe0b5e58f3bc614 Author: Alan Garny Date: Wed Feb 13 08:40:37 2019 +1300 Programmatically prevent drag & drop on a(n OpenCOR-based) Web page. commit 3b52c682558aa3e0a1bc4f6ebf67d96494c5e999 Author: Alan Garny Date: Wed Feb 13 08:14:51 2019 +1300 Programmatically prevent drag & drop on a(n OpenCOR-based) Web page. commit df4518af1330f4f897d1fbd669b2646c4acdf5a8 Author: Alan Garny Date: Wed Feb 13 08:12:45 2019 +1300 CSS: replaced `background` with `background-color` wherever possible. commit 820e8d6471ace8ca8b1650ac017b428b22a5d759 Merge: b5d5fb40e 237d1a52a Author: Alan Garny Date: Mon Feb 11 10:28:11 2019 +1300 QScintilla: upgraded to version 2.11 (closes #1976). commit 237d1a52a98fbc1b337669cba1128eba6130edb5 Author: Alan Garny Date: Mon Feb 11 09:45:25 2019 +1300 Slight updates to our downloads pages (#1976). commit 3b9440063db89d12d48ac534bd97a9a057a4e3c5 Author: Alan Garny Date: Mon Feb 11 09:42:30 2019 +1300 Revert "Only build the QScintilla library (#1976)." This reverts commit e1ff67ab3e80153f85dee961b5061c2be613ddde. commit be9d40a3613e8f21a049235ba0d36a6bdf6c869c Author: Alan Garny Date: Mon Feb 11 09:42:14 2019 +1300 QScintilla: binaries for version 2.11 (#1976). commit 7bfb5480086c3065bb608606893190d75c9280bb Author: Alan Garny Date: Mon Feb 11 09:34:51 2019 +1300 QScintilla: upgraded to version 2.11 (#1976). commit e1ff67ab3e80153f85dee961b5061c2be613ddde Author: Alan Garny Date: Mon Feb 11 09:30:28 2019 +1300 Only build the QScintilla library (#1976). commit b5d5fb40e70ceb0bb5760766b6373390ffe8116d Merge: 8cbb052b8 7c8b3da03 Author: Alan Garny Date: Thu Feb 7 11:26:10 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 7c8b3da03365c68f9af4dac7d86e15b614a034fa Author: Alan Garny Date: Thu Feb 7 11:06:19 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 8cbb052b8c76dfa501bdc944ef73a28ed38b05ef Merge: f0e710eec 4096c9bce Author: Alan Garny Date: Fri Feb 1 15:05:32 2019 +1300 New snapshot. commit 4096c9bcebef54c99ecb83badf336f9e28888ad8 Author: Alan Garny Date: Fri Feb 1 14:49:45 2019 +1300 New snapshot. commit f0e710eecbc89f32b9efb1b9ce9dc3eea94da222 Merge: 0354d7563 4af091906 Author: Alan Garny Date: Fri Feb 1 14:44:40 2019 +1300 Simulation Experiment view: added basic support for the import of external data (closes #1845). commit 4af0919067ab24dd858c082a98b5d5c1fa905d8c Author: Alan Garny Date: Fri Feb 1 14:19:35 2019 +1300 Slight update to our downloads and what is new pages (#1845). commit 90aa3ee1f2b557ce451f710b240e44c08e9be42e Author: Alan Garny Date: Fri Feb 1 14:15:19 2019 +1300 Simulation support: show import values for the current (i.e. starting) point when resetting all our resets (#1845). commit 7c8342c541a63c504090f492b7b3cb42d6c054b5 Author: Alan Garny Date: Fri Feb 1 13:57:33 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs (#1845). commit e0bce81fb02d5c22e6e0c0198a76da632489384e Author: Alan Garny Date: Fri Feb 1 11:59:11 2019 +1300 Some minor cleaning up. commit dfd914bc008e4d43edd31ee664bd16d31a4c628f Author: Alan Garny Date: Fri Feb 1 10:54:33 2019 +1300 Some minor cleaning up. commit c5b41826c57235e8f80e9728006547de81d6a526 Author: Alan Garny Date: Fri Feb 1 09:36:22 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs (#1845). commit a080615eae0cbcca08207bb6d61becf8e43b9c35 Merge: f469f7382 0354d7563 Author: Alan Garny Date: Thu Jan 31 17:54:33 2019 +1300 Merge branch '\''master'\'' into issue1845 commit 0354d7563ff4d6923b83f31093664adc8f0c6f86 Merge: 2bf9694d7 d60c9416b Author: Alan Garny Date: Thu Jan 31 17:52:51 2019 +1300 Simulation Experiment view: fixed various issues with saving a file under a new name (closes #1967). commit d60c9416b40fe3bfa6e9040482055e7c59a5982e Author: Alan Garny Date: Thu Jan 31 14:59:27 2019 +1300 Slight updates to our downloads and what is new pages (#1967). commit 5f1d8ba8ba0eb98c62fa16f7196a0a31ab641520 Author: Alan Garny Date: Thu Jan 31 14:52:56 2019 +1300 Simulation support: properly handle the case where we save a file under a new name (#1967). commit e002df01b42e10dcec394eedb904049a73fb3b6e Author: Alan Garny Date: Thu Jan 31 14:33:07 2019 +1300 Simulation Experiment view: always update the reset state/all model parameters actions. Until now, we were only updating them if we were not in development, which is clearly not what we want. commit d9e5f84d1f06f630a7d16120d147b42fd87f9c39 Author: Alan Garny Date: Thu Jan 31 14:31:19 2019 +1300 Some minor cleaning up. commit 1a54bc21e320644fe894aebcc7b778b3ec1c20cf Author: Alan Garny Date: Thu Jan 31 14:14:38 2019 +1300 Some minor cleaning up. commit f43aba8fe2d2737e53318ab9cf9d87628dd5b7d9 Author: Alan Garny Date: Thu Jan 31 14:14:09 2019 +1300 Some minor cleaning up. commit 6efdcb7a02e11f20fdbe699a8d755237a6306a46 Author: Alan Garny Date: Thu Jan 31 09:53:07 2019 +1300 CellML support: don'\''t have a runtime track its CellML file (#1967). Indeed, the tracked CellML file may become obsolete if it gets saved under a new name. commit 0853d87624cd25a5f622fda8eb79c0b66cea09eb Author: Alan Garny Date: Thu Jan 31 09:42:04 2019 +1300 Simulation: update our internals if our file is being remanaged (#1967). commit f469f7382da186ef7581278c9bff7a44bc9e5035 Author: Alan Garny Date: Wed Jan 30 15:44:20 2019 +1300 Data store interface: we don'\''t want to rethrow but simply throw an exception (#1845). commit ca3cf15de1359c93ea48d94b8fa3b602eea87ed4 Author: Alan Garny Date: Wed Jan 30 15:43:51 2019 +1300 Revert "Data store interface: we don'\''t want to rethrow but simply throw an exception (#1845)." This reverts commit 558c4c658f2970c68392dbf287da8c94fd588c0d. commit 558c4c658f2970c68392dbf287da8c94fd588c0d Author: Alan Garny Date: Wed Jan 30 15:42:39 2019 +1300 Data store interface: we don'\''t want to rethrow but simply throw an exception (#1845). commit dbd13980297526c0e5e63b9efdcfc00adfa66026 Author: Alan Garny Date: Wed Jan 30 15:39:42 2019 +1300 Data store import data: results values are never to be freed since they are managed by whoever used the import data (#1845). I should read my own comments! commit 314eea8fcf3284f597cc364f2420486696053f8f Author: Alan Garny Date: Wed Jan 30 15:09:01 2019 +1300 Some minor cleaning up. commit c0586b6c21c991ebd2281c57207772917cd1c3e9 Author: Alan Garny Date: Wed Jan 30 15:00:18 2019 +1300 Data store interface: properly handle the case where a run cannot be added to a variable (#1845). This also comes handy for our import of external data in case there are already some runs, meaning that we would need to add runs for our computed imported results. commit 48e68b72e47332e071f589add02657db3ad47a7b Author: Alan Garny Date: Wed Jan 30 14:48:53 2019 +1300 Some minor cleaning up. commit 9c2d2072fb3a694672db179bc4e2a0a11e10fead Author: Alan Garny Date: Wed Jan 30 14:44:30 2019 +1300 Data store interface: prevent double deleting (and therefore crash) in DataStoreImportData (#1845). commit 5476e92fdd8d0e3ab985183e008bcb43c477a3b9 Author: Alan Garny Date: Wed Jan 30 14:40:59 2019 +1300 Data store interface: our extra runs actually get removed when removing our import and results variables (#1845). commit d22586c3a384e8b1b369ca6e8bd9965edb67f1fa Author: Alan Garny Date: Wed Jan 30 13:28:41 2019 +1300 Some minor cleaning up. commit 1aca9324d332a3fdb3dbf0e1d6022ea9c11bbcc7 Merge: f00466846 2bf9694d7 Author: Alan Garny Date: Wed Jan 30 11:24:17 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 2bf9694d7cc2cccc8c02d81b2c9b74524178e3e4 Merge: 5a37c2d73 4677052a9 Author: Alan Garny Date: Wed Jan 30 11:10:20 2019 +1300 Cleaning up. commit 4677052a97d261b7856ab6a7fbc6236b85e3d883 Author: Alan Garny Date: Wed Jan 30 10:35:33 2019 +1300 Some minor cleaning up. commit 86af61300d6fb2f7703025ae0fcc359c732de78d Author: Alan Garny Date: Wed Jan 30 10:30:03 2019 +1300 Some minor cleaning up. commit b7c0c2dcc56d80a16d72ca8436b98524aaf28df4 Author: Alan Garny Date: Wed Jan 30 10:24:25 2019 +1300 CliApplication::command(): have the command passed to it separately rather than as part of our arguments. commit 51a200489e400220feaf8be0b1adb24309f0d565 Author: Alan Garny Date: Wed Jan 30 10:04:07 2019 +1300 CLI version: options are well... options for a command. commit 5a37c2d73d90e8da5f92c4440fd9adaa86135d1a Merge: 72cd468d1 9181d236f Author: Alan Garny Date: Tue Jan 29 19:02:35 2019 +1300 CellML tools: can now validate a file from the command line (closes #1964). commit 9181d236f451540e45bf68433ed4b0b2294351d1 Author: Alan Garny Date: Tue Jan 29 18:34:15 2019 +1300 CellML tools: remove HTML tags from our validation output (#1964). commit c237d002ca0437dba4f02ae31c03cbcd87c181b8 Author: Alan Garny Date: Tue Jan 29 18:33:15 2019 +1300 CellML support: slight improvement to our validation. Indeed, OpenCOR would crash if an imported CellML file was XML-malformed. commit 254038571838a5cb046b193a8b40155c373d971e Author: Alan Garny Date: Tue Jan 29 17:45:12 2019 +1300 Slight update to our downloads and what is new pages (#1964). commit e9991e28b101a0ce4508793c86b993cf028f26a2 Author: Alan Garny Date: Tue Jan 29 17:36:33 2019 +1300 Tests: have our runCli() method runt an integer and its output as a parameter passed by reference. This is useful for our work on issue #1964 since it allow us to test the exit code of the CLI version of OpenCOR while still being able to access its output. commit 73b4061da7df7ab1b3f1248f663835ec6ae4b743 Author: Alan Garny Date: Tue Jan 29 17:33:40 2019 +1300 CellML tools: don'\''t consider a file valid before actually trying to validate it (#1964). commit 1ead9aa641bef781be944805dc7b63b3a77eceee Author: Alan Garny Date: Tue Jan 29 17:32:43 2019 +1300 CLI version: return -1 if the command option failed for some reason or another. commit 8957e83be27b2c589f7a4dd3f29b5a2b64186a20 Author: Alan Garny Date: Tue Jan 29 17:32:04 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit ec5c674287543684609234140543510340e0be2c Author: Alan Garny Date: Tue Jan 29 16:34:18 2019 +1300 CLI tests: check that some options/command have the right number of arguments. commit ac0551546fc0eb5242b51b0a71f353b0dfc26740 Author: Alan Garny Date: Tue Jan 29 16:33:47 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit 219af848e2e9abe4aacc43e44b7545e87166672f Author: Alan Garny Date: Tue Jan 29 16:29:02 2019 +1300 CellML tools: can now validate a file from the command line (#1964). commit a501ec014f908ee96f5e01d32012c966ae3727a8 Author: Alan Garny Date: Tue Jan 29 16:25:13 2019 +1300 Some minor cleaning up. commit 40779b9d6582ef80568eb925092cbb0140e931fe Author: Alan Garny Date: Tue Jan 29 16:23:22 2019 +1300 Some minor cleaning up. commit b99a1b04006349f42eba8675f407f1e2b714e929 Author: Alan Garny Date: Tue Jan 29 15:52:54 2019 +1300 CellML tools: can now validate a file from the command line (#1964). commit 9b53a7acc533995f78423c9edb3be57ee559bdbe Author: Alan Garny Date: Tue Jan 29 15:20:13 2019 +1300 Some minor cleaning up. commit a7a4da9104d818fb5ee5a2b748be835d6166f63b Merge: 03c0ce549 72cd468d1 Author: Alan Garny Date: Fri Jan 25 18:41:14 2019 +1300 Merge branch '\''master'\'' into issue1801. commit f004668464a3e2baec4d0d9c79d249a0697bafc2 Merge: 234e6bc74 72cd468d1 Author: Alan Garny Date: Fri Jan 25 18:40:16 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 72cd468d15583079b83c91d46954d27366460822 Merge: 59583badd 939e96eb3 Author: Alan Garny Date: Fri Jan 25 18:39:15 2019 +1300 CellML Annotation view: prevent OpenCOR from crashing after a CellML file has been rendered invalid (closes #1958). commit 939e96eb3564a1e15ddbdfc1a53ee23d190941e4 Author: Alan Garny Date: Fri Jan 25 18:14:49 2019 +1300 Slight updates to our downloads and what is new pages (#1958). commit 4196607441a1c628a51f468be46da55a4f762d61 Author: Alan Garny Date: Fri Jan 25 18:14:22 2019 +1300 CellML Annotation view: make sure that we have a model before actually populating ourselves (#1958). commit a48d27d785a42cdeea90e6a12b20ab4e5c7855ba Author: Alan Garny Date: Fri Jan 25 18:13:55 2019 +1300 Some minor cleaning up. commit e1714d2ef964128e52b62dc175c1d6f6941ba9df Author: Alan Garny Date: Fri Jan 25 18:13:18 2019 +1300 Some minor cleaning up. commit 395022c665cafe32b248040d2f8f649b389a4d1c Author: Alan Garny Date: Fri Jan 25 18:13:04 2019 +1300 Some minor cleaning up. commit 59583baddf356f73808a094ea95af48100da43aa Merge: 0b6218594 09f78c236 Author: Alan Garny Date: Fri Jan 25 12:27:12 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (closes #1960). commit 09f78c2362b6553513348603dd766d092abc9a65 Author: Alan Garny Date: Fri Jan 25 11:56:13 2019 +1300 Some minor cleaning up. commit 110f6b54a7f723781105efab9f87c686251f7b34 Author: Alan Garny Date: Fri Jan 25 11:54:23 2019 +1300 KINSOL solver: use the new recommended methods (#1960). commit 7bc23938fdb1758c541759b9a6e424e0c3c027a8 Author: Alan Garny Date: Fri Jan 25 11:54:08 2019 +1300 Some minor cleaning up. commit 66156abf7c0c2950432fffbe962affa7051e5c87 Author: Alan Garny Date: Fri Jan 25 10:22:15 2019 +1300 SUNDIALS: binaries for version 4.0.2 (#1960). commit e0dff5ca5b641a1548e41ae46a14f2b06d5d3daf Author: Alan Garny Date: Fri Jan 25 10:17:02 2019 +1300 Slight update to our downloads page (#1960). commit 5e9e07653b3d50cde573162c1d7ff9762bc0a9aa Author: Alan Garny Date: Fri Jan 25 10:15:44 2019 +1300 Revert "Only build our SUNDIALS package (#1960)." This reverts commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f. commit f49a172265922a73663e23c162ac5a4ae2e5d9bb Author: Alan Garny Date: Fri Jan 25 09:56:13 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (#1960). commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f Author: Alan Garny Date: Fri Jan 25 09:34:13 2019 +1300 Only build our SUNDIALS package (#1960). commit 6fed7ae12b3c98e6a588ecd196dcf1b09f5c970f Author: Alan Garny Date: Fri Jan 25 09:33:56 2019 +1300 Revert "Only build our SUNDIALS package (#1960)." This reverts commit 4a362f10a46502c30307c465fd591b1526b12f16. commit f6ad71083735c446a644599d829cd418af4ac8b7 Author: Alan Garny Date: Fri Jan 25 09:27:40 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (#1960). commit 4a362f10a46502c30307c465fd591b1526b12f16 Author: Alan Garny Date: Fri Jan 25 09:27:23 2019 +1300 Only build our SUNDIALS package (#1960). commit 234e6bc74b83139082835b5a44c37d2b67ff9612 Author: Alan Garny Date: Thu Jan 24 17:08:41 2019 +1300 Import of data in a simulation: add the results runs in DataStoreImportData (#1845). So that we can (next) handle the case where not all the memory could be handled. commit 0a0e0218655e251d4b31e0bd3893084a8b117b53 Author: Alan Garny Date: Thu Jan 24 16:29:38 2019 +1300 Some minor cleaning up. commit 4e2f2db70a705496dc9ef0283e6a822915983747 Author: Alan Garny Date: Thu Jan 24 15:39:45 2019 +1300 Import of data in a simulation: use the results variables created by DataStoreImportData (#1845). commit 49a48fc2396958eb39880a3eae2e9fb948956309 Author: Alan Garny Date: Thu Jan 24 15:32:18 2019 +1300 DataStoreImportData: give access to our import/results variables (#1845). commit d132080f2a886db231a0769d8c1735248b33dfc3 Author: Alan Garny Date: Thu Jan 24 14:39:13 2019 +1300 Some minor cleaning up. commit e5a71209aee5b6ead45ddd94515c0ddd28ea3c71 Author: Alan Garny Date: Thu Jan 24 14:33:04 2019 +1300 Have DataStoreImportData tell whether it is valid (#1845). Better than checking for imported values (for example). commit 5a61dc2324130f99e9537c25dc23c12b481171ce Author: Alan Garny Date: Thu Jan 24 14:32:16 2019 +1300 Some minor cleaning up. commit 12cf9ee59ecd91d7d4f4a4eb3438d003a21c1781 Author: Alan Garny Date: Thu Jan 24 14:13:13 2019 +1300 Have DataStoreImportData try to create our results values (#1845). commit 2c8825082dd3001bcff1b6b8287506d0ec699e1f Author: Alan Garny Date: Thu Jan 24 14:11:22 2019 +1300 Some minor cleaning up. commit 3f24526f9ccd9a7dc4c15e3b5094419699e4d64b Author: Alan Garny Date: Thu Jan 24 13:50:33 2019 +1300 Some minor refactoring of DataStoreImportData (#1845). Since we are going to add some results values. commit cd31e0fe9b002d6dca8cc1979c6a73a678353fc4 Author: Alan Garny Date: Thu Jan 24 13:20:24 2019 +1300 Some minor cleaning up. commit 733ef655f4bd2cc21a4128a6f9897c3a628d13ee Author: Alan Garny Date: Thu Jan 24 13:18:07 2019 +1300 Data store interface: pass a results data store to our getImportData() (#1845). commit 4eddaa1b0458295a62602a23fd2e31246618a0a0 Author: Alan Garny Date: Thu Jan 24 13:14:44 2019 +1300 Have DataStoreImportData know about our results data store too (#1845). commit 8a557e13d410feb12a0a82acd9a8a417d97285e9 Author: Alan Garny Date: Thu Jan 24 11:35:26 2019 +1300 Some minor cleaning up. commit 5b016db1b7f42339c680eccff7e899f8a5770b19 Author: Alan Garny Date: Thu Jan 24 11:32:39 2019 +1300 Some minor cleaning up. commit 2b30213bbf5bd2507599cfd754c2906ae3e026ec Author: Alan Garny Date: Thu Jan 24 11:28:39 2019 +1300 Data store: improved our DataStoreImportData constructor (#1845). Indeed, if adding variables was to fail, we were not able to remove them since the call to DataStore::addVariables() didn’t return properly. So, now, we add one variable at a time and keep track of the ones that we were able to add, in case we would need to remove them. commit 8cd333dd69771522c53802794a75b6ecd866ea32 Author: Alan Garny Date: Wed Jan 23 17:33:48 2019 +1300 Have DataStoreImportData to handle the progress of a data import (#1845). commit bdd18ba77767a58c9eb70537e3d21dd41bca39b1 Author: Alan Garny Date: Wed Jan 23 17:10:37 2019 +1300 Some minor cleaning up. commit 713b118ab95f73fdbd6f051eb26322f5121863ac Author: Alan Garny Date: Wed Jan 23 17:08:06 2019 +1300 Simulation Experiment view: account for the fact that we might have problems getting our import data (#1845). I.e. we can either not access the data file (anymore) or we cannot allocate all the memory we need to store the data. commit 96174e5090f4483beabdfaed64f091c9be2f4c1f Author: Alan Garny Date: Wed Jan 23 16:23:14 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things (#1845). commit 7552f31686be8a0352e93ae4f4302fdbf070b807 Author: Alan Garny Date: Wed Jan 23 16:21:49 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things (#1845). commit e2f9b707422150d219b17aea2dec3d4dda0707e2 Author: Alan Garny Date: Wed Jan 23 16:02:08 2019 +1300 Data store import: have our DataStoreImportData constructor to add a run to our data store (#1845). commit 4346f85c5b18dac84243d30503919581ec88be1c Author: Alan Garny Date: Wed Jan 23 15:54:03 2019 +1300 Data store import: have our DataStoreImportData constructor to add the required number of variables to our data store (#1845). commit be1798b15637edb99b9a377d80e6cedc1cf2efa3 Author: Alan Garny Date: Wed Jan 23 15:48:02 2019 +1300 Data store import: have our DataStoreImportData constructor to allocate the values array that will be used to import data (#1845). commit 4b34077e2a4468ae3ff2bf84bee8d81c25b71b3e Author: Alan Garny Date: Wed Jan 23 15:13:37 2019 +1300 Simulation Experiment view: fixed and improved our import progress (#1845). For one, we were doing a min using `pProgress` rather than `progress`. Then, there is something maybe faster, but certainly shorter/cleaner, which consists of using std::min_element(). commit ac76c3127194671d073954deb4acc813c810cb9d Author: Alan Garny Date: Wed Jan 23 14:28:33 2019 +1300 Simulation Experiment view: optimised the dragging and dropping of data files (#1845). We keep track of valid files when dragging them over the view, so we don’t have to test them again before actually importing them. commit b51a719d77eb141b4b73b590d95d16b267a5bdcb Author: Alan Garny Date: Wed Jan 23 14:08:40 2019 +1300 Some minor cleaning up. commit 3b2acc9c5ad74d16f82b3ee11ef9d5c5bb422fa4 Author: Alan Garny Date: Wed Jan 23 13:37:14 2019 +1300 CSV data store: use CRLF to separate lines in our export. This is what https://csvlint.io/ told us to do after we validated a CSV file (generated by OpenCOR) that uses LF. commit 78f6d1f90b553be40e3e2f197de9618ccc71a345 Author: Alan Garny Date: Wed Jan 23 13:03:43 2019 +1300 Some minor cleaning up. commit a398ae2af984a39aa04ef250108a0aaa4c52bdb2 Author: Alan Garny Date: Wed Jan 23 13:03:11 2019 +1300 Simulation Experiment view: retrieve the number of data points to import before doing the import itself (#1845). This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit bf52910de705329797907bc8c0294788e301f87d Author: Alan Garny Date: Wed Jan 23 10:40:20 2019 +1300 Some minor cleaning up. commit 0e292a91f7478fa21bf8e5643c3e9fcb1a6011d6 Author: Alan Garny Date: Wed Jan 23 10:38:55 2019 +1300 Simulation Experiment view: retrieve the number of variables to import before doing the import itself (#1845). This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit 3a6adbf842c3aae9f2700b39d0c67bb7a1a6273a Merge: aa188d482 0b6218594 Author: Alan Garny Date: Mon Jan 21 11:36:09 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 0b6218594a89bcc2d2d02fb6390105275e316a3f Merge: 19c712b55 fab2b64e3 Author: Alan Garny Date: Mon Jan 21 11:34:12 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned (closes #1956). commit fab2b64e344fab69af2b2a8236b963e9b457aa3e Author: Alan Garny Date: Mon Jan 21 11:17:03 2019 +1300 Slight updates to our downloads and what is new pages (#1956). commit 5af6640270725218ebf42c304769db05d1088467 Author: Alan Garny Date: Mon Jan 21 11:13:56 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned (#1956). commit 19c712b558e3a8d8af42dce415e5357d055dedbc Merge: 23177ccd5 386049740 Author: Alan Garny Date: Mon Jan 21 10:58:22 2019 +1300 Some minor cleaning up. commit 3860497408f6db0c7986bdc2fb1464f6c916e9ca Author: Alan Garny Date: Mon Jan 21 10:24:46 2019 +1300 Some minor cleaning up. commit bde274690fcebd50e18f47eac9e11d4d0bdd0f73 Author: Alan Garny Date: Mon Jan 21 10:08:45 2019 +1300 Some minor cleaning up. commit aa188d482c432724c958fa146e01b579c8118081 Author: Alan Garny Date: Fri Jan 18 15:53:23 2019 +1300 Simulation: compute the values of imported data when we already have some simulation results (#1845). commit 4a42e503652e0d6cf48e3a340d8a4f0bf86e2bf2 Author: Alan Garny Date: Fri Jan 18 15:34:59 2019 +1300 Data store: don'\''t prevent the addition of variables when there are already some runs (#1845). Indeed, it’s up to the caller to be careful and do whatever needs doing if adding variables to a data store that already has some runs (i.e. what we now do in SimulationResults::importData()). commit 985d7c5f7bccd21abac76712bc3238cd4a8e050f Author: Alan Garny Date: Fri Jan 18 15:32:59 2019 +1300 Some minor cleaning up. commit a341231dbdd503182d766b9e0dc5e01b12851209 Author: Alan Garny Date: Fri Jan 18 15:03:42 2019 +1300 Added SimulationResults::realValue() to make things easier to compute the value of imported data that have just been imported when there are already some simulation results (#1845). commit 571ba1976dde914e70d1d84adb131fb8ab3fc7de Author: Alan Garny Date: Fri Jan 18 12:50:52 2019 +1300 Added SimulationResults::realPoint() to make things easier to compute imported data that have just been imported when there are already some simulation results (#1845). commit 4274e888e8e58ae76fe03048b92ec8848a93184f Author: Alan Garny Date: Fri Jan 18 11:58:25 2019 +1300 Revert "Some minor cleaning up." This reverts commit 6863e83c5ff23ad61e884115623929a33610d539. commit 6863e83c5ff23ad61e884115623929a33610d539 Author: Alan Garny Date: Fri Jan 18 11:48:22 2019 +1300 Some minor cleaning up. commit 03c0ce5497c1adaef530a078191a18b3120e9b8a Merge: 8bb270dfe 23177ccd5 Author: Alan Garny Date: Thu Jan 17 16:45:42 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 8fe9038d0ee4839a76749139b74ddc94e6f6e470 Merge: 27405dfe9 23177ccd5 Author: Alan Garny Date: Thu Jan 17 16:44:14 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 23177ccd50316f9b8627a5e46b244b6ab316214a Merge: 51f0fc972 125d5d798 Author: Alan Garny Date: Thu Jan 17 16:43:23 2019 +1300 Some minor cleaning up. commit 27405dfe971cc645970a233c7424285fa63ce54e Author: Alan Garny Date: Thu Jan 17 16:32:17 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file (#1845). commit a4dbbd8fd86bcbfe991b6bd4c96d9b66ae1b7c58 Author: Alan Garny Date: Thu Jan 17 16:28:10 2019 +1300 Some minor cleaning up. commit 125d5d798308c8f23fb0ba9b90e49c410d413680 Merge: 880634b43 51f0fc972 Author: Alan Garny Date: Thu Jan 17 16:14:09 2019 +1300 Merge remote-tracking branch '\''opencor/master'\'' commit 880634b4370e85919750f3a905cba4b7ec4309d2 Author: Alan Garny Date: Thu Jan 17 16:13:40 2019 +1300 Some minor cleaning up. commit 5d51f79a7e613735b5f89201bb38eab35c01c5fe Author: Alan Garny Date: Thu Jan 17 16:12:33 2019 +1300 Some minor cleaning up. commit d0abac84098595f8941ef569dc398db1c3d5a09f Author: Alan Garny Date: Thu Jan 17 15:32:32 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file (#1845). commit f594cdf69c2d9fa89848900bc2f50717659bb88b Author: Alan Garny Date: Thu Jan 17 15:24:49 2019 +1300 Some minor cleaning up. commit a585e6b248b8ff3b0b816a7cbf76cc9721f0986f Merge: b393f7fc0 51f0fc972 Author: David Brooks Date: Thu Jan 17 15:20:05 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit e06de3c00931bfae8c7652dcfeef2de0caf17f48 Author: Alan Garny Date: Thu Jan 17 14:55:45 2019 +1300 Some minor cleaning up. commit 93c9ef842391e48c9024394976a11ab4de516358 Author: Alan Garny Date: Thu Jan 17 14:43:07 2019 +1300 Some minor cleaning up. commit 51f0fc972ca9535fb9239abf3120d5fec61b5695 Merge: 7b046e30b 7930f525d Author: Alan Garny Date: Thu Jan 17 13:51:53 2019 +1300 CMake: show URL when we have download errors. commit 7930f525db316a796e0cdb795cfb2085f4361ddc Author: David Brooks Date: Thu Jan 17 13:09:03 2019 +1300 CMake: show URL with all download errors. commit 4122fce7a6c667faaa532272bdbb3141a5c82e83 Author: David Brooks Date: Thu Jan 17 12:06:04 2019 +1300 CMake: tweak messages when download errors. commit f6cb6d2dc4c973dd8078a02e32cbd2a74f95be76 Author: Alan Garny Date: Thu Jan 17 11:49:52 2019 +1300 Some minor cleaning up. commit bf05cc8d4692821be6e99a2965a4871098d098a8 Author: Alan Garny Date: Thu Jan 17 11:37:06 2019 +1300 Some minor cleaning up. commit abfbf8382dd6703fc7f50c43616085dc4224f229 Author: Alan Garny Date: Thu Jan 17 11:28:00 2019 +1300 Some minor cleaning up. commit b393f7fc0ddbf3e6fdf60bb7ce0b8184fd2f064f Merge: da1b9154d 7b046e30b Author: David Brooks Date: Thu Jan 17 10:56:37 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit 12c9fd5358d92f297f8ea5dfbe57e8dcca9e1c48 Author: David Brooks Date: Thu Jan 17 10:44:15 2019 +1300 CMake: show URL when we have download errors. commit 037f362113648edcc14f0edfed537f2dc68ca025 Merge: 5bb8ae1c8 7b046e30b Author: Alan Garny Date: Thu Jan 17 10:23:05 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 8bb270dfe4835141c2edd8a9110b89340cfc53a6 Merge: 2d31bb435 7b046e30b Author: Alan Garny Date: Thu Jan 17 10:22:33 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 7b046e30b2c0aa041e3e167ef933a4ffa880cabf Merge: 2f327d9c1 65352df34 Author: Alan Garny Date: Thu Jan 17 10:20:57 2019 +1300 Revert "File Organiser window: slightly reworked the loading/saving of settings." commit 65352df343a9829f12f04cd2bcad9e26c5bf39be Author: Alan Garny Date: Thu Jan 17 09:58:07 2019 +1300 Revert "File Organiser window: slightly reworked the loading/saving of settings." This reverts commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f. Indeed, that commit broke backward compatibility. To use `master` OpenCOR was fine, but then if we were to use OpenCOR 0.6 (or an earlier version of OpenCOR), OpenCOR would crash straightaway. So, although we don'\''t need itemInfo[1] anymore, we still keep it to ensure backward compatibility. commit 5bb8ae1c8a56c9596751648dbd51423dd30e1000 Author: Alan Garny Date: Wed Jan 16 18:08:16 2019 +1300 BioSignalML data store: can now recognise a BioSignalML file (#1845). commit 8a6ee87b57e904b571f8aadab53b58283809dbfc Author: Alan Garny Date: Wed Jan 16 18:04:35 2019 +1300 Some minor cleaning up. commit 3ac13aecd40fd5adc1a3b424809bbca62af4b9e0 Author: Alan Garny Date: Wed Jan 16 17:37:57 2019 +1300 Some minor cleaning up. commit d1a127381310f28824938f77d9a2e996c37067dc Merge: 4a4ff2335 2f327d9c1 Author: Alan Garny Date: Wed Jan 16 17:16:50 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 2d31bb435a137a036161056787596d9ca0d7cc3f Merge: 8784de414 2f327d9c1 Author: Alan Garny Date: Wed Jan 16 17:16:21 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 2f327d9c19721248dc59ba3b41ee2ae072d2fe09 Merge: b8164238c 8bca58aeb Author: Alan Garny Date: Wed Jan 16 17:15:17 2019 +1300 CMake: better error reporting when we can'\''t retrieve a prebuilt package. commit 8bca58aeb79061c7173bb8b160e43df3842a4f2b Author: Alan Garny Date: Wed Jan 16 16:58:52 2019 +1300 CMake: better error reporting when we can'\''t retrieve a prebuilt package. commit 4a4ff23359de49f38213688d3681c81125c37764 Merge: 81c0c8614 b8164238c Author: Alan Garny Date: Tue Jan 15 17:40:55 2019 +1300 Merge branch '\''master'\'' into issue1845. commit 8784de4145186f0bf9c674eb103b7802fb4ae8c6 Merge: 36227b15b b8164238c Author: Alan Garny Date: Tue Jan 15 17:20:06 2019 +1300 Merge branch '\''master'\'' into issue1801. commit b8164238c35f42ee5f79f79d5da4195aeb8034b5 Merge: 26f4a461b 74863874b Author: Alan Garny Date: Tue Jan 15 17:18:06 2019 +1300 Some minor cleaning up. commit 36227b15bfdd01e33344ee1a47c1df0b4edf5808 Author: Alan Garny Date: Tue Jan 15 17:09:03 2019 +1300 Some minor cleaning up. commit 25feb6a65dc18dc3e5fdf90e5a08b04ca7f2f5d7 Author: Alan Garny Date: Tue Jan 15 17:07:36 2019 +1300 Some minor cleaning up. commit 74863874b2c17e29263c20e5f509be9b6c2bc2e9 Author: Alan Garny Date: Tue Jan 15 17:01:26 2019 +1300 Some minor cleaning up. commit 576334f8b79619ad1694110ac4a38813d98a208c Merge: 57633a2f0 26f4a461b Author: Alan Garny Date: Tue Jan 15 16:15:30 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 26f4a461be5cdeac6c116dc29906699e566afbfc Merge: 7f3aa82f0 30d0e1709 Author: Alan Garny Date: Tue Jan 15 15:30:09 2019 +1300 Some minor cleaning up. commit 30d0e1709278dabb0e711d0b878e8769359220a2 Author: Alan Garny Date: Tue Jan 15 15:09:23 2019 +1300 Some minor cleaning up. commit 57633a2f06bdbd419773154fe068e84361b7db08 Merge: cb3c9a02c 7f3aa82f0 Author: Alan Garny Date: Tue Jan 15 14:52:22 2019 +1300 Merge branch '\''master'\'' into issue1801. commit 7f3aa82f05fd63792a05a7afca14b94220ba1577 Merge: ee7db95e5 cab411350 Author: Alan Garny Date: Tue Jan 15 14:49:38 2019 +1300 Some minor cleaning up. commit cab4113501bd9e72a3703895b84ece8d42d61d82 Author: Alan Garny Date: Tue Jan 15 14:34:42 2019 +1300 Some minor cleaning up. commit cb3c9a02ca013a74183002e2e0c6650ccf208553 Author: Alan Garny Date: Mon Jan 14 15:19:47 2019 +1300 Build LibGit2 (#1801). commit 62fc7b2a3c42f06cc703a0611519edfad697096b Author: Alan Garny Date: Mon Jan 14 15:17:42 2019 +1300 Only build LibGit2 (#1801). commit 039e89ef8c8b929b9cdd0562f116b84bcd1e97da Author: Alan Garny Date: Mon Jan 14 15:15:43 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit 37bf3986f1d04bf2e3e3a45ff40e4362e997d214 Author: Alan Garny Date: Mon Jan 14 14:52:10 2019 +1300 Only build OpenSSL (#1801). commit 91265a3281d9266fb19131ab1a2d2f91fa8b0b9e Author: Alan Garny Date: Mon Jan 14 14:51:01 2019 +1300 Make sure OpenSSL 1.1.1 can be found on Windows (#1801). commit 49e90fe203f8449b20a22026c6f5681268f9bcb0 Author: Alan Garny Date: Mon Jan 14 10:31:46 2019 +1300 Some minor cleaning up. commit 5f555ab722cc57b5cea443cf805641b55e1d81dd Author: Alan Garny Date: Fri Jan 11 15:36:20 2019 +1300 Only build LibGit2 (#1801). commit 5ed535a46a63e47b4c38fcf6a2a9a5f497073c6d Author: Alan Garny Date: Fri Jan 11 15:33:04 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit c47c404b4b8eed6bf2c79061e4b9addbf60601f0 Author: Alan Garny Date: Fri Jan 11 15:09:14 2019 +1300 Only build OpenSSL (#1801). commit 58fa365f5680fd03b4d31470f60c27ca4b50870d Author: Alan Garny Date: Fri Jan 11 15:05:40 2019 +1300 Build LibGit2 (#1801). commit 72aa82e0c769e4c9e8d9577106da3e9f4e8417dc Author: Alan Garny Date: Fri Jan 11 15:04:12 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit e066fd2059e75243ae3204b0bf5cf6bec0a865dd Author: Alan Garny Date: Fri Jan 11 14:32:12 2019 +1300 OpenSSL: upgraded to version 1.1.1a (#1801). commit 46373bd15ee721ba99fd6ccfdc929b5eab171393 Merge: 47de48076 ee7db95e5 Author: Alan Garny Date: Fri Jan 11 14:24:54 2019 +1300 Merge branch '\''master'\'' into issue1801. commit ee7db95e5567ff8d2f7bd6aaa81c2015d2e571ec Merge: 3375ee44a faa40cb12 Author: Alan Garny Date: Fri Jan 11 14:00:36 2019 +1300 Mesa: upgraded to version 18.2.8 (closes #1945). commit faa40cb12fb0726c7676bde5254e24aecfbe6f79 Author: Alan Garny Date: Fri Jan 11 13:42:09 2019 +1300 Slight update to our downloads page (#1945). commit c4af566ffd88c0424d0a535f1850ff5dcce250f2 Author: Alan Garny Date: Fri Jan 11 13:41:00 2019 +1300 Revert "Build Mesa (on Linux) (#1945)." This reverts commit 7aece31384ceb30a6a6427bff4c735043ef0bda0. commit 7143490296e771ce01795b6bd29a66cf411373b1 Author: Alan Garny Date: Fri Jan 11 13:40:37 2019 +1300 Mesa: binary for version 18.2.8 (#1945). commit 0485a6ecbb49dca487680b9cdefe0f393f0e1dcf Author: Alan Garny Date: Fri Jan 11 13:34:07 2019 +1300 Mesa: upgraded to version 18.2.8 (#1945). commit 7aece31384ceb30a6a6427bff4c735043ef0bda0 Author: Alan Garny Date: Fri Jan 11 13:33:29 2019 +1300 Build Mesa (on Linux) (#1945). commit 3375ee44a4ea264d61cfebe86b5a5acadf6e1350 Merge: 94e9a3ee9 d54d4e355 Author: Alan Garny Date: Fri Jan 11 13:14:50 2019 +1300 Satisfy Xcode analysis. commit d54d4e3559f3b0e2f606ed771cd6bd69cb960d92 Author: Alan Garny Date: Fri Jan 11 12:29:31 2019 +1300 PMR window: make Xcode happy. Indeed, it was complaining that `item` could be null, even though it couldn’t be in practice. Still, better be safe than sorry. commit 89020ecc48bd2fa4fc0c7fbb8679c45f460e0368 Author: Alan Garny Date: Fri Jan 11 12:25:33 2019 +1300 Data store: make Xcode happy. Indeed, it was complaining about `hierarchyItem` being potentially null, which technically speaking could have happened indeed, even though it never does. commit 7167821d5312634569b98c9073cdce5f30dc814f Author: Alan Garny Date: Fri Jan 11 12:06:18 2019 +1300 Some minor cleaning up and also make Xcode happy. Indeed, it was complaining about odeSolverInterface being potentially null in our for() loop. commit 06e4e523be9e19f6c76040530bcd9ce62debe710 Author: Alan Garny Date: Fri Jan 11 12:00:16 2019 +1300 Simulation Experiment view: keep Xcode happy. commit f71c3d063eb8f49f411843bfc89cf32d61d42c71 Author: Alan Garny Date: Fri Jan 11 11:33:05 2019 +1300 Main window: keep Xcode happy. See https://stackoverflow.com/a/14901611 for some background about this. commit 80dc9fc0c18b6bbccf50ea5229d8e424c767e4c1 Author: Alan Garny Date: Fri Jan 11 10:54:23 2019 +1300 PMR Web Service: slight reworking of our code to please Xcode. Indeed, although it never happens, Xcode considers that there is a potential risk of memory leak with `workspace` in PmrWebService::workspaceInformationResponse(). So, better please Xcode and be safe rather potentially sorry. commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f Author: Alan Garny Date: Fri Jan 11 10:25:43 2019 +1300 File Organiser window: slightly reworked the loading/saving of settings. Indeed, we used to track the index of an item’s parent item, but we don’t actually need to do that. This also means that we had to put a safeguard in FileOrganiserWindowModel::decodeHierarchyData() since otherwise OpenCOR would crash if it was to retrieve some settings that were stored using the old format. In the end, that safeguard is a good thing to have no matter what, so that’s fine. commit 3c77afc71b5888287220ee7bc8252a6cf7ffe8d3 Author: Alan Garny Date: Fri Jan 11 10:17:04 2019 +1300 Central widget: slight reworking to please Xcode. It was indeed complaining about `mode` being potentially null. commit 124e80bf55fb8f92a3f6ec5a03e2f652b97a401b Author: Alan Garny Date: Fri Jan 11 10:02:18 2019 +1300 File Organiser window: reworked the code a bit to please Xcode. It’s because we used to test pParentItem, so Xcode would think that there could be a memory leak for fileItem (and, I imagine, folderItem too, although Xcode didn’t report anything about it). commit d0f143b6e6f35aec27d177b68d152081e2abaaa8 Author: Alan Garny Date: Thu Jan 10 18:37:51 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than sorry! commit c5ad284fbf3db30cc1c8ef5434788ca616e44089 Author: Alan Garny Date: Thu Jan 10 18:33:37 2019 +1300 Some minor cleaning up. commit bd3345d0984248211ce93c8abd5f16eba4c9e712 Author: Alan Garny Date: Thu Jan 10 18:00:04 2019 +1300 Don'\''t need this anymore. Note that this should not have been needed in the first place, so if the problem ever occurs again then we will need to find the cause of it rather than come with that kind of trick. commit d3bbcb6028e530b9418a1d6f04486835cbb11f4f Author: Alan Garny Date: Thu Jan 10 17:56:15 2019 +1300 Cleaned up some dodgy code. Thanks to Xcode’s analysis… commit ac371389e8284440387b202ec014220cb281f042 Author: Alan Garny Date: Thu Jan 10 17:48:41 2019 +1300 Some minor cleaning up. commit 1430ab0375da2e94a94768951ad5f3cac342f972 Author: Alan Garny Date: Thu Jan 10 17:25:58 2019 +1300 Added an updated comment re the style of TabBarWidget(). commit b6f5ab29bc5eb94c4a0b2c7206e9c3a365758dbe Author: Alan Garny Date: Thu Jan 10 17:25:27 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than sorry! commit 94e9a3ee91a01aec691236a282b1db147ea89e41 Merge: 081c89c93 a7259b2d2 Author: Alan Garny Date: Thu Jan 10 16:47:44 2019 +1300 Simplified our use of pEvent->modifiers(). commit a7259b2d2fe20f608db0898f974cdbded13ca800 Author: Alan Garny Date: Thu Jan 10 16:31:46 2019 +1300 Simplified our use of pEvent->modifiers(). Regarding EditorWidgetEditorWidget::keyPressEvent(), we should never have tested for Qt::Key_Tab since pressing it within a highlighted word should result in that word not being highlighted anymore. Similarly, pressing Qt::Key_Backtab on a non-highlighted word may result in it being highlighted. Otherwise, still in EditorWidgetEditorWidget::keyPressEvent(), we don’t need to test for the arrow keys anymore since we test for Qt::NoModifier and arrow keys rely on Qt::KeypadModifier. commit 081c89c937466069d295fbd4a28fc9fe4d41c2f0 Merge: c725de49c ecf8a5bc4 Author: Alan Garny Date: Thu Jan 10 11:47:23 2019 +1300 Graph Panel widget: fixed a small problem with the scale range of an axis in some cases (closes #1941). commit ecf8a5bc4ba6b4dcb6ce798f5f60595fa2494147 Author: Alan Garny Date: Thu Jan 10 11:26:48 2019 +1300 Slight updates to our downloads and what is new pages (#1941). commit 7e864458223bc3a46f3106fcd31c5a4e72f62b1c Author: Alan Garny Date: Thu Jan 10 11:13:18 2019 +1300 Replaced our remaining calls to qIsNull() with qFuzzyIsCompare(). When it comes to GraphPanelPlotWidget::optimizeAxis() (and our original call to qIsNull(pMin-pMax)), this is what was causing the problem reported in issue #1941. commit 193fd7d6eef4587b6ec11ee7e1024fec56758740 Author: Alan Garny Date: Thu Jan 10 11:04:43 2019 +1300 Replace some of our calls to qIsNull() with qFuzzyIsNull() or qFuzzyIsNull(). commit 2a09c0cb15dcb59e2e748e23c6a850c33861191f Author: Alan Garny Date: Thu Jan 10 10:51:38 2019 +1300 Some minor cleaning up. commit da1b9154d467ae6a5ab876d5b365688f69684636 Merge: d3638c2d7 c725de49c Author: David Brooks Date: Thu Jan 10 10:39:16 2019 +1300 Merge branch '\''master'\'' into pythonplugin commit c725de49cf029e182afaa9ced194205763520ca8 Merge: 4f69a99eb 2cdb6cb21 Author: Alan Garny Date: Wed Jan 9 18:43:21 2019 +1300 Make sure that FileManager::checkFiles() properly handles files that have been deleted. commit 2cdb6cb21dbb9037ec978b8dc6f5dfe802b2e7d7 Author: Alan Garny Date: Wed Jan 9 18:15:48 2019 +1300 Make sure that FileManager::checkFiles() properly handles files that have been deleted. commit 4f69a99eb648551fc935a0b6976518b0975160e6 Merge: 7a389dfd9 31fd029e2 Author: Alan Garny Date: Wed Jan 9 18:07:40 2019 +1300 Slight improvement to some of our test CellML files. commit 31fd029e298030c66255d929907dc96a41f09fdc Author: Alan Garny Date: Mon Jan 7 10:50:30 2019 +1300 Made our simple_dae_model.cellml really a DAE model. commit 2c6cfab8062a1da9105bf9f78b6f632dc6f95980 Author: Alan Garny Date: Mon Jan 7 10:17:36 2019 +1300 Slight cleaning up of our parabola_dae_model.cellml test file. commit 7a389dfd9ccf1abefcf031b13c49a77c403ba830 Author: Alan Garny Date: Fri Jan 4 19:53:01 2019 +1300 Some minor cleaning up. commit 30cd45793f5ba78727fb6d4e888c2ecb67ac8b0a Merge: c256dbb80 63c83b6e9 Author: Alan Garny Date: Fri Jan 4 19:02:33 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit 63c83b6e935aac1316ba92761d976f5732bc7500 Author: Alan Garny Date: Fri Jan 4 18:46:39 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit fca4fe752b32a76870a92f811cdf37b1f4a56d45 Author: Alan Garny Date: Fri Jan 4 16:37:16 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit c256dbb805a5a11a9146beae53b51e846de036a2 Merge: a2bf47c09 8d246a5c1 Author: Alan Garny Date: Fri Jan 4 16:07:53 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit 8d246a5c1aec2a0a394241bcb79be2a4c353f329 Author: Alan Garny Date: Fri Jan 4 15:12:32 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit dad8d2374defafe4f23722075dea69e201492b01 Author: Alan Garny Date: Fri Jan 4 15:10:20 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit a2bf47c094f697b8c44276026f613f5b1b0a3d77 Merge: 1b7e6536c 168235ea7 Author: Alan Garny Date: Thu Jan 3 11:14:24 2019 +1300 Qwt: upgraded to version 6.1.4 (closes #1933). commit 168235ea766acb9eda2c87cde049593a5f03372a Author: Alan Garny Date: Thu Jan 3 10:57:51 2019 +1300 Slight update to our downloads page (#1933). commit 2d9127f689ea6dbd27b04dc0bcb7fa8015c5dc22 Author: Alan Garny Date: Thu Jan 3 10:53:25 2019 +1300 Revert "Only build our Qwt package (#1933)." This reverts commit 084f5f23b127ba1f8eeca236d349a4ee97920202. commit b6e09eaf689dae6ba2a1d5244418f5295d359a19 Author: Alan Garny Date: Thu Jan 3 10:53:07 2019 +1300 Qwt: binaries for version 6.1.4 (#1933). commit 55a96082a6a5bd285fcb30b7322b3705f9065b70 Author: Alan Garny Date: Thu Jan 3 10:26:57 2019 +1300 Qwt: upgraded to version 6.1.4 (#1933). commit 084f5f23b127ba1f8eeca236d349a4ee97920202 Author: Alan Garny Date: Thu Jan 3 10:25:00 2019 +1300 Only build our Qwt package (#1933). commit 1b7e6536c4ad2b47030dfdeb33a06a81008bd883 Merge: fac9d8b61 d3e8fb4a3 Author: Alan Garny Date: Sat Dec 22 14:14:46 2018 +1300 QScintilla: improved the build system (closes #1931). commit d3e8fb4a3dd76a3f54341e1b8c7df688b1234114 Author: Alan Garny Date: Sat Dec 22 13:25:11 2018 +1300 Some minor cleaning up. commit 88bbf546ea6818018849e5c8a4fb921edcb431a2 Author: Alan Garny Date: Sat Dec 22 12:49:51 2018 +1300 Some minor cleaning up. commit 780e92ff61e842853edc8254dd894c028babcf18 Author: Alan Garny Date: Sat Dec 22 12:40:58 2018 +1300 Some minor cleaning up. commit e11b63ffc880abcf1d9e09e4b6178a33d4499878 Author: Alan Garny Date: Sat Dec 22 11:28:03 2018 +1300 Some minor cleaning up. commit 2cbd4207c900951d28a39191da7f7f11ab8ae053 Author: Alan Garny Date: Sat Dec 22 11:11:15 2018 +1300 Some minor cleaning up. commit 261ac2be28d00ac4089f1b38cf88240fe4b6809b Author: Alan Garny Date: Sat Dec 22 10:18:48 2018 +1300 No need to define QSCINTILLA_DLL anymore (#1931). commit df3a5a2c607eea9394943769191215c26b7a38c6 Author: Alan Garny Date: Sat Dec 22 10:17:34 2018 +1300 Don'\''t only build our QScintilla package. commit dd50324e9dce33555f57785b4b9721a1f549f829 Author: Alan Garny Date: Sat Dec 22 10:17:05 2018 +1300 QScintilla: new binaries for version 2.10.8 (#1931). commit dada31aaf57d9ff3d1729f61c7922497c60b5d51 Author: Alan Garny Date: Sat Dec 22 09:59:37 2018 +1300 Only build our QScintilla package. commit d7f276fdef7846369710dd80c879c949208b2052 Author: Alan Garny Date: Sat Dec 22 09:54:17 2018 +1300 Only build our QScintilla package. commit fac9d8b6183d547f5b1ed32047d2c6665523fe29 Merge: 52bb31285 b54a7049f Author: Alan Garny Date: Fri Dec 21 23:20:30 2018 +1300 SUNDIALS: upgraded to version 4.0.1 (closes #1929). commit b54a7049f2e054333aa6348b47e71bb019b15a31 Author: Alan Garny Date: Fri Dec 21 19:49:15 2018 +1300 Revert "Only build our SUNDIALS package (#1929)." This reverts commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e. commit 03cea5b128d04ae74e715ba5e5be4cc6dee51b4d Author: Alan Garny Date: Fri Dec 21 16:39:24 2018 +1300 Slight update to our downloads page (#1929). commit 0e467cea606b514edc78d76b092436e0d9f736a6 Author: Alan Garny Date: Fri Dec 21 16:38:15 2018 +1300 SUNDIALS: binaries for version 4.0.1 (#1929). commit 7e425b2320385666133a7770624f0cef625e600c Merge: cb4d56488 52bb31285 Author: Alan Garny Date: Fri Dec 21 16:33:36 2018 +1300 Merge branch '\''master'\'' into issue1929. commit 52bb312850376f8f70c3d5f7e9303f28bd3df2b1 Merge: 3ca47ac0f 1ad5d407c Author: Alan Garny Date: Fri Dec 21 16:32:51 2018 +1300 C++ improvements to the code (closes #1924). commit cb4d564880678f860b89ae70c25399f83fc644a0 Author: Alan Garny Date: Fri Dec 21 16:31:23 2018 +1300 SUNDIALS: upgraded to version 4.0.1 (#1929). commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e Author: Alan Garny Date: Fri Dec 21 16:27:54 2018 +1300 Only build our SUNDIALS package (#1929). commit 1ad5d407c92c2db834a68c4251e1cfb55f1245e6 Author: Alan Garny Date: Fri Dec 21 16:16:20 2018 +1300 Some minor cleaning up. Prevent any possible ambiguity. commit 3f62d24a21ad8bf9628a17922a41c4a9307b0d63 Author: Alan Garny Date: Fri Dec 21 15:50:38 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). Prevent a crash when: - Opening a file in OpenCOR; - Deleting the file; and - Going back to OpenCOR and agreeing to closing the file. commit 3ca47ac0f85d7fc5352e0df2ee3ce24635388820 Merge: a5ec7aeee 21a160179 Author: Alan Garny Date: Fri Dec 21 14:44:31 2018 +1300 CellML Text view: improved Unicode support (closes #1926). commit 21a1601798f33ccf9fb1a35ab5cdf7ba448bd258 Author: Alan Garny Date: Fri Dec 21 14:11:57 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer (#1926). commit 507781cb78dada20180d669017db77267cff90ff Author: Alan Garny Date: Fri Dec 21 11:26:28 2018 +1300 Slight update to our what is new and downloads pages (#1926). commit 02c6e420d659471c5cbefdb98af9c512a728052f Author: Alan Garny Date: Fri Dec 21 11:11:51 2018 +1300 CellML Text viewer: fixed a problem with Unicode characters (#1926). commit 2b5f948342e80a1960e7428225d5a4fb90acbd81 Author: Alan Garny Date: Fri Dec 21 10:34:07 2018 +1300 CellML Text view: save time when updating our viewer by checking whether we are within a comment (#1926). commit 1831f686c9fa0fafb3e7bdbb9cf49a4ad67f7bcd Author: Alan Garny Date: Fri Dec 21 09:57:55 2018 +1300 Some minor cleaning up. commit 3942400730d1edd445f803a95e461db41c4b1f07 Author: Alan Garny Date: Fri Dec 21 09:24:36 2018 +1300 Some minor cleaning up. commit a712f9aa0254a55868f954d374c9d35d5cf2ca28 Author: Alan Garny Date: Fri Dec 21 09:23:59 2018 +1300 Some minor cleaning up. commit fee86ec3405eb8199776c2cde6e6f6d3b709a7ec Author: Alan Garny Date: Thu Dec 20 17:48:33 2018 +1300 Some minor cleaning up. commit 716b108d5ca68dd74789d3775fa71275cbcf984c Author: Alan Garny Date: Thu Dec 20 17:20:29 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer (#1926). commit 18f1e13b6e36469ae99053a8a120b47af8bc717e Author: Alan Garny Date: Thu Dec 20 10:50:13 2018 +1300 Some minor cleaning up. commit b824423fb0bcefc884429e9bc023437775489c4c Author: Alan Garny Date: Thu Dec 20 10:49:02 2018 +1300 Some minor cleaning up. commit a5ec7aeee9c6df6ca18fcec7757867a14f5f29ac Merge: 40acc0ab0 02dd839b5 Author: Alan Garny Date: Wed Dec 19 16:56:37 2018 +1300 C++ improvements to the code (closes #1924). commit 02dd839b585d9f47222f85e20e176c9da942975b Author: Alan Garny Date: Wed Dec 19 16:38:19 2018 +1300 C++: replaced our use of for() loops with iterators with that of range-based for() loops whenever possible (#1924). commit d5640ea6527dbee5e98ffa218509de160a76b70f Author: Alan Garny Date: Wed Dec 19 16:18:19 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). commit a82ba81a7008b4d6bb01b55cf24819b4c3dc10e3 Author: Alan Garny Date: Wed Dec 19 16:16:59 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). commit 47de480761d6aaa99114db579155d49cb7473753 Merge: db36f196e 40acc0ab0 Author: Alan Garny Date: Tue Dec 18 16:33:09 2018 +1300 Merge branch '\''master'\'' into issue1801. commit 81c0c8614c3cd9a299c2a2b61a568f2e4a121aa4 Merge: a914d15bb 40acc0ab0 Author: Alan Garny Date: Tue Dec 18 16:29:22 2018 +1300 Merge remote-tracking branch '\''opencor/master'\'' into issue1845. commit d3638c2d7d40b591dd6e66a855e0b6962ba66812 Author: David Brooks Date: Tue Dec 18 13:07:21 2018 +1300 Upgrade SciPy to version 1.1.0. commit 6c0fae07a40e244054985728384a0282b88b0609 Merge: 1adb1399d 40acc0ab0 Author: David Brooks Date: Tue Dec 18 11:14:05 2018 +1300 Merge branch '\''master'\'' into pythonplugin commit 1adb1399d504e77d28d5dcace645466556bc2ffc Author: David Brooks Date: Tue Dec 18 11:12:02 2018 +1300 Python: fix bad import with `matplotlib` under `PythonQt`. commit 40acc0ab0a6e26114f8c5c32f8b890c56d1d360c Merge: 98682ceda 4a505b9a8 Author: Alan Garny Date: Mon Dec 17 18:19:46 2018 +1300 SUNDIALS: upgraded to version 4.0.0 (closes #1919). commit 4a505b9a848312d512fd1e703d6c2bc8d2538102 Author: Alan Garny Date: Mon Dec 17 17:55:30 2018 +1300 CVODES and KINSOL: updated our code for version 4.0.0 of SUNDIALS (#1919). commit 9ed36cee7f9a834e2d99b8b8cfba9f26a1732e86 Author: Alan Garny Date: Mon Dec 17 16:35:51 2018 +1300 Some minor cleaning up. commit 4e9ff4bf021d55b806c4b1981c1c2f82f3ee61d9 Author: Alan Garny Date: Mon Dec 17 14:39:04 2018 +1300 Slight update to our downloads page (#1919). commit c3001dc7f8f42b907148e41c9a2902eec6f296ac Author: Alan Garny Date: Mon Dec 17 14:36:42 2018 +1300 Revert "Only build our SUNDIALS package (#1919)." This reverts commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce. commit 09335dc44c61f928aaaa49e8f513cfe6dd54cfec Author: Alan Garny Date: Mon Dec 17 14:31:41 2018 +1300 SUNDIALS: binaries for version 4.0.0 (#1919). commit 8e881b68f83db6f7e9a376e15d9e90fa45360085 Author: Alan Garny Date: Mon Dec 17 14:26:07 2018 +1300 SUNDIALS: upgraded to version 4.0.0 (#1919). commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce Author: Alan Garny Date: Mon Dec 17 13:58:00 2018 +1300 Only build our SUNDIALS package (#1919). commit 98682ceda1c86f0393b99e17ed49f7a7b9a87b16 Merge: e48574785 2f6a1e355 Author: Alan Garny Date: Mon Dec 17 13:56:10 2018 +1300 Mesa: upgraded to version 18.2.7 (closes #1918). commit 2f6a1e35579c4ee900292dbd26f7231d845dd885 Author: Alan Garny Date: Mon Dec 17 13:36:15 2018 +1300 Slight update to our downloads page (#1918). commit 6ae4001193e14665cd94c91784a02a1b92e0c088 Author: Alan Garny Date: Mon Dec 17 13:33:20 2018 +1300 Revert "Only build our Mesa package (#1918)." This reverts commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5. commit debefbd755ae0c1812c2160630ade20ec359de55 Author: Alan Garny Date: Mon Dec 17 13:33:01 2018 +1300 Mesa: binary for version 18.2.7 (#1918). commit 76d5ce4a976b62c163ea3ddc46fc4a8a798a3079 Author: Alan Garny Date: Mon Dec 17 13:27:36 2018 +1300 Mesa: upgraded to version 18.2.7 (#1918). commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5 Author: Alan Garny Date: Mon Dec 17 13:26:45 2018 +1300 Only build our Mesa package (#1918). commit e4857478563da09c51963f35a6dd37c27fd7eba3 Merge: 5ee22f8d5 8283fae19 Author: Alan Garny Date: Mon Dec 17 13:24:27 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 (closes #1917). commit 8283fae19850c34139a941fd21abf0908946bca6 Author: Alan Garny Date: Mon Dec 17 13:07:31 2018 +1300 LLVM+Clang: Windows binaries for version 7.0.1 (#1917). commit e4d05e1257b3e8b793f212cf0bc35fa0fa3d8c2b Author: Alan Garny Date: Mon Dec 17 11:26:00 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 (#1917). commit 8c00d626e9e86afba465df29813e5150a58c8768 Author: Alan Garny Date: Mon Dec 17 11:18:37 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 (#1917). commit bd6f8c4f1c5316f7ae960bea2b1aa891446e40bf Author: Alan Garny Date: Mon Dec 17 10:54:48 2018 +1300 Slight update to our downloads page (#1917). commit ff9ba6a506339b822df9e184fd99195d094a242a Author: Alan Garny Date: Mon Dec 17 10:39:26 2018 +1300 Revert "Only build our LLVM+Clang package (#1917)." This reverts commit 13153533b6de8c9a7288ee767012f1b7528fa6ca. commit 2665d65b1ec3a75a1ca844b101964b01572cc32d Author: Alan Garny Date: Mon Dec 17 10:39:05 2018 +1300 LLVM+Clang: macOS binary for version 7.0.1 (#1917). commit 614fba4f68f5042d860d7400d85a2b489c7f564a Author: Alan Garny Date: Mon Dec 17 09:37:10 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 (#1917). commit 13153533b6de8c9a7288ee767012f1b7528fa6ca Author: Alan Garny Date: Mon Dec 17 09:16:46 2018 +1300 Only build our LLVM+Clang package (#1917). commit a914d15bb79d6902c18d56b6ab2e84a89c93e1f8 Merge: ca8b1e807 5ee22f8d5 Author: Alan Garny Date: Sat Dec 15 12:48:31 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 5ee22f8d50015d7b50b51cd63dc80be34ee800eb Merge: 5ea5974a0 9d05b90c2 Author: Alan Garny Date: Sat Dec 15 12:45:30 2018 +1300 Qt: upgraded to version 5.12.0 (closes #1910). commit 9d05b90c23e8e47c54ed4c040a2f24da6151e47f Author: Alan Garny Date: Sat Dec 15 11:47:32 2018 +1300 Some minor cleaning up (#1910). Not only that, but it prevents some compilation errors on Windows using Qt 5.12.0 LTS: [4/19] Performing update step for '\''developerDocumentationBuild'\'' Current branch master is up to date. [5/19] Performing update step for '\''userDocumentationBuild'\'' Current branch master is up to date. [6/19] Building CXX object src\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\tests\t ests.cpp.obj FAILED: src/plugins/miscellaneous/Compiler/CMakeFiles/Compiler_tests.dir/tests/t ests.cpp.obj D:/Programming/OpenCOR/build/clcachewrapper C:\PROGRA~2\MICROS~2.0\VC\bin\amd64\cl.exe /nologo /TP @src\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\tests\ tests.cpp.obj.rsp /showIncludes /Fosrc\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\test s\tests.cpp.obj /Fdsrc\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\ /FS -c ..\src\plugins\miscellaneous\Compiler\tests\tests.cpp C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE\bitset(101): error C2666: '\''operator /'\'': 11 overloads have similar conversions C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector4d.h(281): note: could be '\''const QVector4D operator /(const QVector4D &,const QVector4D &)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector4d.h(276): note: or '\''const QVector4D operator /(const QVector4D &,float)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector3d.h(281): note: or '\''const QVector3D operator /(const QVector3D &,const QVector3D &)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector3d.h(276): note: or '\''const QVector3D operator /(const QVector3D &,float)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector2d.h(256): note: or '\''const QVector2D operator /(const QVector2D &,const QVector2D &)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector2d.h(251): note: or '\''const QVector2D operator /(const QVector2D &,float)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtGui/qtransform.h(402): note: or '\''QTransform operator /(const QTransform &,qreal)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qsize.h(364): note: or '\''const QSizeF operator /(const QSizeF &,qreal)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qsize.h(194): note: or '\''const QSize operator /(const QSize &,qreal)'\'' c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(427): note: or '\''QMarginsF operator /(const QMarginsF &,qreal)'\'' c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(213): note: or '\''QMargins operator /(const QMargins &,qreal)'\'' c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(207): note: or '\''QMargins operator /(const QMargins &,int)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(205): note: or '\''double operator /(int,qfloat16) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(205): note: or '\''double operator /(qfloat16,int) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(195): note: or '\''float operator /(float,qfloat16) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(195): note: or '\''float operator /(qfloat16,float) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(194): note: or '\''double operator /(double,qfloat16) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(194): note: or '\''double operator /(qfloat16,double) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(193): note: or '\''long double operator /(long double,qfloat16) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(193): note: or '\''long double operator /(qfloat16,long double) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(176): note: or '\''qfloat16 operator /(qfloat16,qfloat16) noexcept'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qpoint.h(402): note: or '\''const QPointF operator /(const QPointF &,qreal)'\'' C:\Qt\5.12.0\msvc2015_64\include\QtCore/qpoint.h(206): note: or '\''const QPoint operator /(const QPoint &,qreal)'\'' C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE\bitset(101): note: while trying to match the argument list '\''(std::size_t, )'\'' C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE\bitset(100): note: while compiling class template member function '\''bool std::bitset<59>::_Subscript(std::size_t) const'\'' C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE\bitset(108): note: see reference to function template instantiation '\''bool std::bitset<59>::_Subscript(std::size_t) const'\'' being compiled ..\src\plugins\thirdParty\LLVMClang\ext\release\include\llvm/IR/Attribut es.h(683): note: see reference to class template instantiation '\''std::bitset<59>'\'' being compiled [7/19] Performing configure step for '\''developerDocumentationBuild'\'' -- Configuring done -- Generating done -- Build files have been written to: D:/Programming/OpenCOR/build/ext/Build/developerDocumentationBuild [8/19] Performing configure step for '\''userDocumentationBuild'\'' -- Configuring done -- Generating done -- Build files have been written to: D:/Programming/OpenCOR/build/ext/Build/userDocumentationBuild ninja: build stopped: subcommand failed. D:\Programming\OpenCOR\build> commit fa46f06e5e7ff41db6377dec5c9616f88a01c334 Author: Alan Garny Date: Fri Dec 14 23:56:38 2018 +1300 Revert "Build QtWebKit with Qt 5.12.0 LTS (#1910)." This reverts commit bea64a0f9acfd5560c19e625699cc5eeb351bc75. commit 66c8db8d8e7ff5d650e25d4c7edd7203a64bb2fd Author: Alan Garny Date: Fri Dec 14 23:41:35 2018 +1300 Slight update to our downloads page (#1910). commit 5b2448b5ec7ae6cfedfcb9cc88d439ea524f85fc Author: Alan Garny Date: Fri Dec 14 23:36:39 2018 +1300 QtWebKit: binaries that ar compatible with Qt 5.12.0 LTS (#1910). commit bea64a0f9acfd5560c19e625699cc5eeb351bc75 Author: Alan Garny Date: Fri Dec 14 20:33:41 2018 +1300 Build QtWebKit with Qt 5.12.0 LTS (#1910). commit 94fbd1a6efd8c362a1ea6641aa298d533fdded78 Author: Alan Garny Date: Fri Dec 14 18:17:09 2018 +1300 Some minor cleaning up (#1910). commit 401cf67933be4a36c7f669f28f4bfda3970bb996 Merge: 50f90fb0d 5ea5974a0 Author: Alan Garny Date: Fri Dec 14 09:54:47 2018 +1300 Merge branch '\''master'\'' into issue1910. commit 5ea5974a0a5d64c4a83c8163483e6dd371b1c624 Author: Alan Garny Date: Fri Dec 14 09:54:07 2018 +1300 Some minor cleaning up. commit 50f90fb0d8e0a959d03c709cd67dc7ccc6c3ac55 Merge: ab80195d0 f174e1b71 Author: Alan Garny Date: Thu Dec 13 14:15:20 2018 +1300 Merge branch '\''master'\'' into issue1910. commit f174e1b71b8143305f505c02b0358690ad29e6c0 Merge: 4364fcd65 63d9f6a6f Author: Alan Garny Date: Thu Dec 13 14:08:22 2018 +1300 COMBINE support: now recognise files that have a master attribute of "1" (rather than "true") (closes #1912). commit 63d9f6a6f2b0cf78055ce98a0e16d6c3e913dbe8 Author: Alan Garny Date: Thu Dec 13 13:16:09 2018 +1300 Slight update to our what is new page (#1912). commit e87bf1535486548211c096963b7a2c83a3f69c52 Author: Alan Garny Date: Thu Dec 13 13:14:29 2018 +1300 Slight update to our downloads page (#1912). commit 092334ec394d75f9c828df84d8f8c47c014ff866 Author: Alan Garny Date: Thu Dec 13 13:14:03 2018 +1300 Slight update to our what is new page (#1912). commit 96ab1ed869d55ba91e6615bfe3c22c8eeb80ce46 Author: Alan Garny Date: Thu Dec 13 13:06:12 2018 +1300 COMBINE Archive support: now recognise files that have a master attribute of "1" (#1912). commit ab80195d019e5a544c7e34d5c314490bad96c8e6 Author: Alan Garny Date: Wed Dec 12 18:52:48 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS (#1910). commit 9439d6105bfb511fe4881225504b2a04c1bf3528 Author: Alan Garny Date: Wed Dec 12 18:51:24 2018 +1300 QtWebKit:Qt 5.12.0 LTS binaries for Linux and macOS (#1910). commit b066b81d2e72967fe25b12e98082ccc62c01367a Author: Alan Garny Date: Wed Dec 12 18:50:30 2018 +1300 Don'\''t build QtWebKit anymore. commit 91fe219f0662a72738c7451e735b861fb85260b9 Author: Alan Garny Date: Wed Dec 12 17:25:00 2018 +1300 Build QtWebKit with Qt 5.12.0 LTS (#1910). commit bfe3a3a7c09acadebb1a6bbf42fac01c57c93c56 Author: Alan Garny Date: Wed Dec 12 15:20:40 2018 +1300 Revert "Temporarily determine which styles are available in Qt 5.12.0 LTS." This reverts commit 9ba3aa6cf02e8ecb4708a95fdcfe305ed83e222f. commit c9ccd0eab1f36c33ff2c31aced17eb46d9e438a8 Author: Alan Garny Date: Wed Dec 12 15:16:30 2018 +1300 Qt: "new" default style on Windows (#1910). commit 89804c025faf026b23a97b98a4a27b3bb65d4e1d Author: Alan Garny Date: Wed Dec 12 15:14:05 2018 +1300 Qt: we need to deploy the Windows style plugin with Qt 5.12.0 LTS (#1910). commit 9ba3aa6cf02e8ecb4708a95fdcfe305ed83e222f Author: Alan Garny Date: Wed Dec 12 15:10:14 2018 +1300 Temporarily determine which styles are available in Qt 5.12.0 LTS. commit 7ef584fdb673efa28c8992aefac27fc76dc509a4 Author: Alan Garny Date: Wed Dec 12 15:04:47 2018 +1300 Qt: "new" default style on macOS (#1910). commit 71abc6b43f94c73e488564910bd089a592a4c7f3 Author: Alan Garny Date: Wed Dec 12 15:00:03 2018 +1300 Qt: we need to deploy the macOS style plugin with Qt 5.12.0 LTS (#1910). commit c3b54f6817efab5c98762379a33cd13e8fb46bfd Author: Alan Garny Date: Wed Dec 12 14:44:51 2018 +1300 Always show our Preferences dialog (since we have non-plugin specific preferences). commit 35d9e3e3dabe088b930bb042d0aa67cbd4aa088d Author: Alan Garny Date: Wed Dec 12 14:42:34 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS (#1910). To try to get the screen from the position of a dialog (our preferences dialog for example) returns nullptr. So, retrieve the screen of our main window instead, which should be fine. commit e2cfe26f061a96fc614a41e42f7c3c1dbf2445a4 Author: Alan Garny Date: Wed Dec 12 13:28:49 2018 +1300 Qt: the cocoa plugin now needs DBus on macOS (#1910). commit e6ed76b68a18fc796402bfd29436abe8c72b20af Author: Alan Garny Date: Wed Dec 12 12:11:04 2018 +1300 Build a bare bone version of OpenCOR. commit 70db93f328cb9e3e097becb2ab261b9a8ea6440e Author: Alan Garny Date: Wed Dec 12 11:58:43 2018 +1300 Reverted part of commit a20d003. commit a20d003e5f9b14aaae9642e91d7626b48400ddd4 Author: Alan Garny Date: Wed Dec 12 11:57:25 2018 +1300 Qt: require at least version 10.12 (Sierra) of macOS (#1910). commit 8e3c48ad3010ec37b9c7313cc8f1720615095223 Author: Alan Garny Date: Wed Dec 12 11:56:37 2018 +1300 Slight update to our supported platforms page now that we use Qt 5.12.0 LTS (#1910). commit 8a04f6b399a026ea66299312cc024fb78b62857b Merge: 07c6d254a 4364fcd65 Author: Alan Garny Date: Wed Dec 12 11:49:22 2018 +1300 Merge branch '\''master'\'' into issue1910. commit 4364fcd657eda6f7c1e82c63d61b90c2a1d57911 Merge: f268d8d23 a5f18d978 Author: Alan Garny Date: Wed Dec 12 11:48:42 2018 +1300 Some minor cleaning up of the general documentation. commit 07c6d254a65cd9190eab4aa806fe1706134115b8 Author: Alan Garny Date: Wed Dec 12 11:44:45 2018 +1300 Some minor cleaning up. commit a5f18d9782ba27a325ad13c7ddcfb57ca8244a16 Author: Alan Garny Date: Wed Dec 12 11:27:23 2018 +1300 Some minor cleaning up of the general documentation. commit db0d0b85511cfeb5d0f9810724edf0a30d21544b Author: Alan Garny Date: Wed Dec 12 11:14:20 2018 +1300 Some minor cleaning up of the general documentation. commit 671bec500fb7bed288686b504627ec391dbc8552 Author: Alan Garny Date: Wed Dec 12 11:01:40 2018 +1300 Some minor cleaning up of the general documentation. commit 1ab227b793dc6e1c17e786542a1c150e13029751 Author: Alan Garny Date: Wed Dec 12 10:30:32 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS (#1910). commit ca8b1e80797a2296c596ae218b0a9ddedb4c3b20 Merge: fafb8b829 f268d8d23 Author: Alan Garny Date: Tue Dec 11 17:57:00 2018 +1300 Merge branch '\''master'\'' into issue1845. commit fafb8b82999f08216a9f9bbc1b669af1aaf8ea23 Author: Alan Garny Date: Tue Dec 11 17:56:13 2018 +1300 Simulation Experiment view: don'\''t keep track of imported data when reloading a file (#1845). commit f268d8d232cba2d4720f086ad0d0a3507767c12e Merge: 187525476 7bfa09e20 Author: Alan Garny Date: Tue Dec 11 17:41:41 2018 +1300 Don'\''t build an official release anymore. commit 282e914aa21415982cb0fe43445cb0a6ede5984f Merge: 5e3a865d0 7bfa09e20 Author: Alan Garny Date: Tue Dec 11 17:00:51 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 7bfa09e204353a1ad5ea8ae665d0a4e41c2a6005 Author: Alan Garny Date: Tue Dec 11 16:59:33 2018 +1300 Don'\''t build an official release anymore. commit 187525476caf3cf601ef5ac47b1db26236293566 Merge: 7e97ea4e8 27157992a Author: Alan Garny Date: Tue Dec 11 16:45:18 2018 +1300 Supported platforms. commit 27157992ab382c0cb952e1bd05c2dd0081047c2a Author: Alan Garny Date: Tue Dec 11 16:22:10 2018 +1300 Slight update to our supported platforms page. commit 7e97ea4e8f5abb6975b570f6483f2786c1b36f08 Merge: 976154d43 0f58ed140 Author: Alan Garny Date: Tue Dec 11 15:28:37 2018 +1300 Released OpenCOR 0.6 (closes #1906). commit 0f58ed14048cb1a5a472722d66644a759eca0fc2 Author: Alan Garny Date: Tue Dec 11 13:36:09 2018 +1300 Slight update to our downloads pages (#1906). commit 554846978a7f57fa3b55a99c6cb39ae94095afb1 Author: Alan Garny Date: Tue Dec 11 13:35:23 2018 +1300 Slight update to our what is new page (#1906). commit e03616c0eb73df611490f444ecab7779eca5b5ad Author: Alan Garny Date: Tue Dec 11 13:25:06 2018 +1300 Build version 0.6 of OpenCOR (#1906). commit bfd89acb874faf36b61196ab098c55723ba0ed14 Author: David Brooks Date: Thu Dec 6 20:04:13 2018 +1300 Python: add comment to help debugging. commit 88712169a0fdc31adf8110e58a9814218f1c1a2f Author: David Brooks Date: Thu Dec 6 20:03:43 2018 +1300 Python: tidy up C++ code. commit 6cf66f3de5b7935e4ed07a783c53eeb6829397ea Author: David Brooks Date: Thu Dec 6 20:02:29 2018 +1300 CMake now requires external project targets to be explicitly defined. commit 86e0fa7b65153ad1326c895aae0b95d714114da6 Author: David Brooks Date: Thu Dec 6 20:00:44 2018 +1300 Python: upgrade to latest versions of NumPy, lxml and Sphinx. commit 70dd21202d85f6955bfd2a400a1d29e2469bbc51 Author: David Brooks Date: Thu Dec 6 19:59:48 2018 +1300 Python: be consistent in specifying versions of packages. commit 4b30492ba553ac563beae3b9ea434e76037020b2 Author: David Brooks Date: Thu Dec 6 19:58:41 2018 +1300 Python: upgrade to latest versions of Jupyter, IPython and QtConsole packages. commit db7485e48647bb8c6b69153c2b7c5ecb9a9e0911 Author: David Brooks Date: Thu Dec 6 19:56:38 2018 +1300 Python: upgrade `matplotlib` to version 3.0.2. commit fc489a9cd23fd732e907beb7f01dc66a7c98a5a1 Author: David Brooks Date: Wed Dec 5 18:51:10 2018 +1300 Python: minor tidy-up. commit e7437f74c67bd2b2fafa220f62963527bed898c3 Author: David Brooks Date: Wed Dec 5 13:44:27 2018 +1300 Python: upgrade to latest versions of `pip` and `setuptools`. commit 5e3a865d0212ed943acf040871f172e6a31bbef9 Merge: 224209f72 976154d43 Author: Alan Garny Date: Tue Dec 4 21:18:19 2018 -0500 Merge branch '\''master'\'' into issue1845. commit 976154d436ad682e75c61bb5ddd5346bafb54ced Merge: fe8938008 9e4430e6b Author: Alan Garny Date: Tue Dec 4 21:16:59 2018 -0500 Some minor cleaning up. commit 1d8ef89cbfbe01a850420266249b505e17c0fda0 Author: David Brooks Date: Wed Dec 5 13:43:20 2018 +1300 Python: bundle Jupyter Lab with OpwenCOR. commit 9e4430e6bffb52bc3329b2b8140dcaba2765cd66 Author: Alan Garny Date: Tue Dec 4 19:03:18 2018 -0500 Some minor cleaning up. commit 224209f72cbbcb9314c1acbe04d9950f61d2b045 Author: Alan Garny Date: Tue Dec 4 19:03:18 2018 -0500 Some minor cleaning up. commit 88d06d7a1f94f812f9716a39f26a109c64ab375f Author: Alan Garny Date: Tue Dec 4 18:01:46 2018 -0500 Some minor cleaning up. commit 007bdf61a3d03aa772830ae3e593517fd7448815 Author: Alan Garny Date: Tue Dec 4 17:39:34 2018 -0500 Some minor cleaning up. Indeed, our 2018-11-19 snapshot (i.e. OpenCOR 0.6 release candidate) was using version 3, but we then modified the interface a bit (in preparation for issue #1845), so we had to bump the version. Yet, I somehow made a “mistake” by bumping it to 5 rather than 4, so correcting this here. commit 223c57a156a08364d449be3118c8da338e6f3b08 Merge: 210d1b0bc fe8938008 Author: David Brooks Date: Tue Dec 4 22:19:38 2018 +1300 Merge branch '\''master'\'' into pythonplugin commit fe8938008bfe62e7c94ee747380fbcdb36c2ebb8 Merge: 779e76586 f9e4c726c Author: Alan Garny Date: Mon Dec 3 23:43:58 2018 -0500 Slight update to our downloads page. commit 210d1b0bc87564f2416dfb33a0e74fbda840a604 Merge: d7d1c5c0c 0b6f1f11c Author: David Brooks Date: Tue Dec 4 15:54:45 2018 +1300 Merge branch '\''master'\'' into pythonplugin ; Conflicts: ; src/plugins/datastoreinterface.cpp ; src/plugins/datastoreinterface.h ; src/plugins/miscellaneous/Core/src/corecliutils.h ; src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewinformationparameterswidget.cpp ; src/plugins/support/SimulationSupport/src/simulation.cpp ; src/plugins/support/SimulationSupport/src/simulation.h commit f9e4c726c45e38f5178a382b9b68e23c6997728b Author: Alan Garny Date: Mon Dec 3 19:20:05 2018 -0500 Slight update to our downloads page. commit 77c9246cdee0832221295da61d87c7e0f6ac6602 Merge: 51c218710 779e76586 Author: Alan Garny Date: Mon Dec 3 17:07:05 2018 -0500 Merge branch '\''master'\'' into issue1845. commit 779e7658668421ed3887e0839a5ca347eb10e48d Merge: 0b6f1f11c 4f8c7d9e1 Author: Alan Garny Date: Mon Dec 3 16:52:19 2018 -0500 Mesa: upgraded to version 18.2.6 (closes #1901). commit 4f8c7d9e10696a6fdc84db7b0ec35a28b8bbd651 Author: Alan Garny Date: Mon Dec 3 16:02:34 2018 -0500 Don'\''t only build the Mesa library (#1901). commit 8ca96f2e4ae00321060dd7f1a6ede6e6b66e862d Author: Alan Garny Date: Mon Dec 3 16:00:44 2018 -0500 Mesa package: binaries for version 12.8.6 (#1901). commit c510f9a4ef2e88ddf41fc544ca5c929baff0127b Author: Alan Garny Date: Mon Dec 3 14:58:35 2018 -0500 Only build the Mesa library (#1901). commit 36d86f4ce2d4bdc029c96aaf02aab6a3b4f97d53 Author: Alan Garny Date: Mon Dec 3 14:58:04 2018 -0500 Mesa: upgraded to version 18.2.6 (#1901). commit a1ee6a42d54f91a5ca574121ceb5cbe77d53f8c3 Author: Alan Garny Date: Mon Dec 3 14:57:40 2018 -0500 Some minor cleaning up. commit 4c8ab00d8f44c277469bbf078452a4c0bca5c7dc Author: Alan Garny Date: Mon Dec 3 14:57:18 2018 -0500 Only build the Mesa library (#1901). commit 51c218710c708417f5beb6f2e5bde1bce02aac42 Merge: 65d08df4a 0b6f1f11c Author: Alan Garny Date: Sat Dec 1 18:03:24 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 0b6f1f11c86b7e5ba9fbe3f1bd31367ed209bf2a Merge: 59bb42079 98bae3dd6 Author: Alan Garny Date: Sat Dec 1 18:02:25 2018 +1300 Some minor cleaning up and fixes. commit 65d08df4a042030b67fd63054337983c2456ccd5 Author: Alan Garny Date: Sat Dec 1 17:55:54 2018 +1300 Data Store interface: now includes imports, so bump up our version (#1845). commit c70dfe1ca2236a125c7e154a83173fefb99952bd Merge: 5da2285ac 98bae3dd6 Author: Alan Garny Date: Sat Dec 1 17:34:59 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 98bae3dd6721bc48f0e87070bc674bd258ee57f7 Author: Alan Garny Date: Sat Dec 1 17:32:54 2018 +1300 Graph Panel widget: ignore infinite/NaN values when computing our boundingRect() and boundingLogRect() methods. commit c9a93bbbdbe58e155ed763bfc15d9a0cc6efe88d Author: Alan Garny Date: Sat Dec 1 17:29:41 2018 +1300 Some minor cleaning up. commit 5da2285aca6cdbd0c3133cdd43eefe4757d4c1b7 Author: Alan Garny Date: Sat Dec 1 17:25:03 2018 +1300 Some minor cleaning up. commit 8c5841980bdde73fd63e69d4bbde295d604acfcc Merge: 6ddacfcc9 0766a8d3c Author: Alan Garny Date: Sat Dec 1 17:20:38 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 0766a8d3cadb2d6e37ed7593fc25e5c51b34d0e6 Author: Alan Garny Date: Sat Dec 1 17:18:04 2018 +1300 Some minor cleaning up. # Conflicts: # src/plugins/simulation/SimulationExperimentView/src/simulationexperiment viewinformationgraphpanelandgraphswidget.h commit 6ddacfcc94978e822c021fea19fa327e8c7bc346 Merge: 1ca904469 efa2f55ba Author: Alan Garny Date: Sat Dec 1 17:14:41 2018 +1300 Merge branch '\''master'\'' into issue1845. commit efa2f55ba8eb9cfb362652ab29ce2bf6c98123c4 Author: Alan Garny Date: Sat Dec 1 17:12:44 2018 +1300 Simulation Experiment view: ignore infinite/NaN values. commit 90e33705670100b71903a0d95841931d942655da Author: Alan Garny Date: Sat Dec 1 17:11:25 2018 +1300 Some minor cleaning up. commit 439673b446137ad2ccf8ff6cf16fd5f76d3c7ab3 Author: Alan Garny Date: Sat Dec 1 17:09:13 2018 +1300 Some minor cleaning up. commit 1ca90446980079d7696b9000b78db86f3bede605 Merge: d1539dab8 a80c89594 Author: Alan Garny Date: Sat Dec 1 17:03:11 2018 +1300 Merge branch '\''master'\'' into issue1845. commit a80c89594d053bc18a5f5f331139b3f4bfcb46a8 Author: Alan Garny Date: Sat Dec 1 17:00:10 2018 +1300 Some minor cleaning up. commit d1539dab878b3c825d984512d236b9c30ac263a6 Merge: b4d7d0077 6bf4813f4 Author: Alan Garny Date: Sat Dec 1 16:49:17 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 6bf4813f465acc0827044eaa79f378a1a7b72e5b Author: Alan Garny Date: Sat Dec 1 16:39:59 2018 +1300 Data Store interface: renamed our DataStoreData class to DataStoreExportData. It’s in preparation of our support for data import. commit b4d7d0077771505497d0d62bdb3d4a34872ccdaa Author: Alan Garny Date: Sat Dec 1 16:02:53 2018 +1300 Simulation Experiment view: reset all our model parameters and clear our simulation results before importing some data (#1845). This is a temporary solution that prevents OpenCOR from crashing when importing some data and then deciding to plot some of it when there are already some runs. Indeed, the imported data hasn'\''t been computed for those runs... commit bf5590ae3caa41b0ae9bbb14e515a0dc9ded75fa Author: Alan Garny Date: Sat Dec 1 15:34:13 2018 +1300 Some minor cleaning up. commit ed51a07dab515710e9abbedaa2c5ba59b5ebcbe2 Author: Alan Garny Date: Sat Dec 1 15:03:59 2018 +1300 Some minor cleaning up. commit a76f0292e7ae591e9b077900864dd53da46eb4b3 Author: Alan Garny Date: Sat Dec 1 14:28:07 2018 +1300 Simulation Experiment view: ignore infinite/NaN values. commit 6417aa9c2004792dd8caa5a8b028d5cbefdac677 Author: Alan Garny Date: Sat Dec 1 13:20:28 2018 +1300 Graph Panel widget: only rely on valid points for our boundingRect() and boundingLogRect() methods. commit 9d9b466b7fdce883e6fa2bf0f3329bcbdbf5021b Author: Alan Garny Date: Sat Dec 1 13:18:13 2018 +1300 Some minor cleaning up. commit aa9ef38e74a9e84a93645554ff0fd3488b193836 Author: Alan Garny Date: Fri Nov 30 18:28:18 2018 +1300 Simulation support: can now plot imported data over several runs (#1845). commit 577d165bbc8ed78f519bf4126a7787662c4d3278 Author: Alan Garny Date: Fri Nov 30 18:00:20 2018 +1300 Simulation Experiment view: don'\''t export to SED-ML graphs that involve imported data (#1845). commit 05dd1139c51ae7db29973122c10b8cd8c42495bb Author: Alan Garny Date: Fri Nov 30 15:48:42 2018 +1300 Some minor cleaning up. commit 4a62894c32942b12b1fbefa310bea31608f7d4e0 Author: Alan Garny Date: Fri Nov 30 15:45:20 2018 +1300 Simulation Experiment view: make sure that our imports contents menu (in the Parameters section) is reset when reloading a file (#1845). commit 4e766983a4b44d9a97e5c23f4fad2ca3cafdf041 Author: Alan Garny Date: Fri Nov 30 15:44:12 2018 +1300 Some minor cleaning up. commit e5fb314b78461fd74dd99a94d615eab8cb40ef1e Author: Alan Garny Date: Fri Nov 30 15:43:55 2018 +1300 Simulation support: support the resetting of a simulation when it comes to imported data (#1845). commit 4b2c427c7d6bb328e995a38e23e8c9b5c85f4e8a Author: Alan Garny Date: Fri Nov 30 14:24:31 2018 +1300 Some minor cleaning up. commit 2b6b69d4aa2955709c89ab6fcbf6538d649749c3 Author: Alan Garny Date: Fri Nov 30 14:20:41 2018 +1300 Simulation support: now compute our imported data before adding a point (#1845). Generate a quiet NaN if we are outside of the VoI range. commit 676fce1f032d62b7ad54bc991e17e4417b63e991 Author: Alan Garny Date: Fri Nov 30 14:07:39 2018 +1300 Some minor cleaning up. commit 799933565133f93ea2730f6ac9f0774ffa8b77e4 Author: Alan Garny Date: Fri Nov 30 12:28:11 2018 +1300 Simulation support: now compute our imported data before adding a point (#1845). commit f356d892c0f99fe37e7bf21f0e3375c1377159de Author: Alan Garny Date: Fri Nov 30 10:43:57 2018 +1300 Some minor cleaning up. commit acb72f95e5ea8b7f652a0c268e84666bdf31a268 Author: Alan Garny Date: Fri Nov 30 10:29:22 2018 +1300 Some minor cleaning up. commit cc0313ee8b89f527886288ef627e476456000cdc Author: Alan Garny Date: Thu Nov 29 18:32:59 2018 +1300 Simulation Experiment view: make sure that graphs depending on imported data can be updated (#1845). commit 59cc1d951053bb00784919a80aa7840664ad7ea3 Author: Alan Garny Date: Thu Nov 29 18:30:19 2018 +1300 Simulation support: added support for imported data to our simulation results class (#1845). commit 86b9123c797b10e0694ec4e861c8d7a858331c80 Author: Alan Garny Date: Thu Nov 29 18:22:55 2018 +1300 Some minor cleaning up. commit 9d3f5cc13c0456fc383fad0a10637979894340d2 Author: Alan Garny Date: Thu Nov 29 18:18:23 2018 +1300 Simulation Experiment view: have our Parameters section get updated with our imported data (#1845). commit ff4c43fd10d5793f538e08b7e157ca2be91bcdf8 Author: Alan Garny Date: Thu Nov 29 18:17:44 2018 +1300 Some minor cleaning up. commit 72479a9bc74de6a0c9674a44cdbd66674205db30 Author: Alan Garny Date: Thu Nov 29 17:15:22 2018 +1300 CellML support: added transparency to our Data icon (#1845). commit 65d9b8bf0451997aaba248622ec5567250cca5a2 Author: Alan Garny Date: Thu Nov 29 17:02:16 2018 +1300 Simulation Experiment view: make sure that our imported data have a hierarchy (#1845). commit b30b5d6fe7fd17697fccde08c46e5c9fcce4b695 Author: Alan Garny Date: Thu Nov 29 16:38:36 2018 +1300 Some minor cleaning up. commit 9532897d81bcb9684b30024d633fa9d801f88427 Author: Alan Garny Date: Thu Nov 29 16:28:57 2018 +1300 Simulation Experiment view: our Graphs section now properly refers our imported data (#1845). commit 66dde1775054fbb713a94c03430371739f8b1940 Author: Alan Garny Date: Thu Nov 29 16:25:59 2018 +1300 Some minor cleaning up. commit 4647b163e1e376513f139c60b42091d0768c5696 Author: Alan Garny Date: Thu Nov 29 16:08:16 2018 +1300 Simulation Experiment view: our Parameters section now properly refers our imported data (#1845). commit 34fd6be82e8635d967f85427f2717c503cee0f33 Author: Alan Garny Date: Thu Nov 29 15:45:50 2018 +1300 Some minor cleaning up. commit 479215a6636a7c197279db1bdaab5291902e02fa Author: Alan Garny Date: Thu Nov 29 15:45:19 2018 +1300 Simulation support: now track imported data (#1845). commit 0ef782361f708c92723a30eb8cd383eac7367e81 Author: Alan Garny Date: Thu Nov 29 14:01:19 2018 +1300 Some minor cleaning up. commit 5c1c133a03f9891c43d8845eb97d9cb1ccca84f5 Author: Alan Garny Date: Thu Nov 29 13:58:30 2018 +1300 Simulation support: have a pointer to a double for each of imported data (#1845). This is going to be useful for our corresponding CellML runtime parameter. commit 706f86aef8bab6290dc44dff5c412613e0f82ef2 Author: Alan Garny Date: Thu Nov 29 13:55:50 2018 +1300 Simulation support: have a pointer to a double for each of imported data (#1845). This is going to be useful for our corresponding CellML runtime parameter. commit 977f3b520d2fbdee9b67921c4419cee74fe5a787 Author: Alan Garny Date: Thu Nov 29 13:33:36 2018 +1300 Simulation Experiment view: added import data to the context menu of our Parameters section (#1845). commit bef71d20b31b25f738a8f7919331fccdb98a974a Merge: 480d0f265 59bb42079 Author: Alan Garny Date: Thu Nov 29 13:24:45 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 480d0f265b680161ffc98ef5806b594ee6de5a1b Author: Alan Garny Date: Thu Nov 29 13:24:00 2018 +1300 CellML support: moved our data icon here from our Simulation Experiment view (#1845). Indeed, we may, outside of our Simulation Experiment view, want to have a CellML simulation to handle imported data, e.g. to link a model parameter to an imported data. We must therefore account for that “new” type of parameter. commit 59bb420790de5e01a5b848f8b1da15658a9bbaca Author: Alan Garny Date: Thu Nov 29 13:22:00 2018 +1300 Some minor cleaning up. commit 6174120619c2c1f9e5d9a3fbcebd28fcdaf34646 Author: Alan Garny Date: Thu Nov 29 11:50:58 2018 +1300 Simulation support: place holder for imported data (#1845). commit 66b8f3f5013566db6079f0761ff6f181bc2e2813 Author: Alan Garny Date: Thu Nov 29 10:55:21 2018 +1300 Some minor cleaning up. commit ce2bb89a5261c9838e60ed62d63ffcbc8be237da Author: Alan Garny Date: Thu Nov 29 09:34:20 2018 +1300 Some minor cleaning up. commit 18cc02ab32c6b23eb440e5a337e564bd7d0a522b Author: Alan Garny Date: Thu Nov 29 08:59:53 2018 +1300 Some minor cleaning up. commit 906302ecb05e3da028c53e72b0a436b5c3786722 Author: Alan Garny Date: Wed Nov 28 18:18:36 2018 +1300 Simulation Experiment view: added import data to the context menu of our Parameters section (#1845). commit f08a72e608199d6fb1aa0382537357d99faa4233 Author: Alan Garny Date: Wed Nov 28 18:17:48 2018 +1300 Simulation Experiment view: added a place holder for import data to our Graphs section (#1845). commit 1537a61321780efbe8bb8cecff2288025333899c Merge: 48219a073 503ca043f Author: Alan Garny Date: Wed Nov 28 18:16:22 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 503ca043f89c3edc424d4595d88836d64679c6c4 Merge: cf56aedde d2bb006ae Author: Alan Garny Date: Wed Nov 28 18:14:29 2018 +1300 Some minor cleaning up. commit 48219a0738c2d97117d6f8268670208c52018e8c Author: Alan Garny Date: Wed Nov 28 18:04:55 2018 +1300 Simulation Experiment view: missed some translations (#1845). commit d2bb006ae660e54dbc84762a64d3141405b9cc5f Author: Alan Garny Date: Wed Nov 28 17:59:59 2018 +1300 Some minor cleaning up. commit f9a5f8088ad1b85b7aa887ea9d5d68f8299bd305 Author: Alan Garny Date: Wed Nov 28 17:40:26 2018 +1300 Some minor cleaning up. commit b1bd0053562d63b1c1422f4be0adfc59f012d1d7 Merge: a42439175 cf56aedde Author: Alan Garny Date: Wed Nov 28 16:38:05 2018 +1300 Merge branch '\''master'\'' into issue1845. commit a42439175044d02fa214121e0aba5da8b609bb9f Author: Alan Garny Date: Wed Nov 28 16:37:15 2018 +1300 Simulation Experiment view: add imported data to our Parameters section (#1845). commit cf56aeddeccfdccd5e66cb3ec1cf5ac62c2f279a Author: Alan Garny Date: Wed Nov 28 16:35:53 2018 +1300 Some minor cleaning up. commit 9f7f108661c6d52b03d86de1b94c8cabc507e066 Author: Alan Garny Date: Wed Nov 28 15:56:57 2018 +1300 Simulation Experiment view: added a data icon (#1845). commit 9a8ead15928a5c1cbb38206fba79bcf8f27bdad4 Author: Alan Garny Date: Wed Nov 28 15:45:37 2018 +1300 CellML support: added a data icon (#1845). commit e4ef9965cb99b0a5ad661ca70302d41e16ede4b6 Author: Alan Garny Date: Wed Nov 28 14:25:54 2018 +1300 Some minor cleaning up. commit fa5e6a6d363974bf2f8c8a15c61783528f018d88 Author: Alan Garny Date: Wed Nov 28 14:12:09 2018 +1300 Simulation Experiment view: place holder for updating our Parameters section (#1845). commit da1b2663cae918fa4133f6973870bd494f6fa442 Author: Alan Garny Date: Wed Nov 28 14:11:20 2018 +1300 Some minor cleaning up. commit 709b1878dccfc2227cead699c1cc10fe9e2a8586 Merge: 139f987bd 59c7d081d Author: Alan Garny Date: Wed Nov 28 14:05:54 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 59c7d081d2cda0bc3f9d9d2eb883fd6e1ac45f5d Author: Alan Garny Date: Wed Nov 28 14:05:04 2018 +1300 Some minor cleaning up. commit 139f987bd590f567d91f2c92729e6d75edd590c5 Author: Alan Garny Date: Wed Nov 28 13:52:35 2018 +1300 Simulation Experiment view: delete the import data of all our imports only we are really done with them (#1845). commit a500a713f74f9604a2346bae6c059bff30777ca7 Author: Alan Garny Date: Wed Nov 28 13:51:44 2018 +1300 Simulation Experiment view: always keep track of all import error messages (#1845). This is so that we have a “free” access to the import data for all our imports (needed later on to populate our Parameters section). commit 134c616aa2e7292cad7c7703d98a661ae138fd2e Author: Alan Garny Date: Wed Nov 28 13:48:53 2018 +1300 CSV data store: slight change in the error message we generate when importing some data (#1845). commit 80e9a03ed46de31f967d9a4d029d35f53326b909 Author: Alan Garny Date: Wed Nov 28 13:20:11 2018 +1300 Some minor cleaning up. commit fd08c7132802d0f047b36f9ed455840867ad1b22 Author: Alan Garny Date: Wed Nov 28 13:17:12 2018 +1300 Simulation Experiment view: place holder for updating our Parameters section (#1845). commit 75c9e07ee720b0cd8bf5e4ea164e1310d594201f Author: Alan Garny Date: Wed Nov 28 12:47:16 2018 +1300 Simulation Experiment view: can now properly import several files (#1845). We also account for the fact that some files may not be data files or that some imports can’t be done because of the memory not being allocable. commit f2ba253ef17c64a616e0c36c315b32088ed60d5f Merge: cbe8a3e51 efd76e399 Author: Alan Garny Date: Wed Nov 28 12:38:35 2018 +1300 Merge branch '\''master'\'' into issue1845. commit efd76e39982bb3695bbd0b6e3847646f33c32a20 Merge: 2dc033b91 4c2027f8a Author: Alan Garny Date: Wed Nov 28 12:33:13 2018 +1300 Some minor cleaning up. commit 4c2027f8a3cee2c34adce953dc741c6a753359b6 Author: Alan Garny Date: Wed Nov 28 11:37:20 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. This is currently of no use to us, but it might come handy (and definitely will be when importing data; see issue #1845). commit 8b3f069144c706deb40dce282cb41f4ce9fe6b4f Author: Alan Garny Date: Wed Nov 28 11:30:27 2018 +1300 Some minor cleaning up. commit cbe8a3e51ccc7cb5a76ab55e22d4ba6ed7917eb3 Merge: 561a77e2a 2dc033b91 Author: Alan Garny Date: Wed Nov 28 09:14:47 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 2dc033b918eeb795242dc2f22927dfbbbf536aef Author: Alan Garny Date: Wed Nov 28 09:13:52 2018 +1300 Some minor cleaning up. commit 561a77e2adf8e60cd401602ce27d5431189d38a0 Merge: 858e335a4 5cac9faf0 Author: Alan Garny Date: Wed Nov 28 08:53:33 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 5cac9faf03120586100bb4bef2d6ffa135bc1f3a Author: Alan Garny Date: Tue Nov 27 20:12:03 2018 +1300 Some minor cleaning up. commit 858e335a4e193b91a4970b0873560aaa9d6f5f93 Merge: 6e8b1b84a b9948cdaf Author: Alan Garny Date: Tue Nov 27 17:54:06 2018 +1300 Merge branch '\''master'\'' into issue1845. commit b9948cdafeb78cd0350a2f0bc46cd4c0796a81f4 Author: Alan Garny Date: Tue Nov 27 17:52:58 2018 +1300 Some minor cleaning up. commit 6e8b1b84a2fc5d7916c8f41ac8762859e40b8df5 Merge: e5475baa6 56085682e Author: Alan Garny Date: Tue Nov 27 17:47:58 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 56085682ea9d561a5e00c4ad480c28d7e4ffc992 Author: Alan Garny Date: Tue Nov 27 17:47:12 2018 +1300 Some minor cleaning up. commit e5475baa68fcd78177650ad451456a3b6e19f8ee Merge: 750047aac a7dca304e Author: Alan Garny Date: Tue Nov 27 16:11:05 2018 +1300 Merge branch '\''master'\'' into issue1845. commit a7dca304e28349a1c90460c364a7431674526006 Merge: 8ab1487c3 56495034f Author: Alan Garny Date: Tue Nov 27 16:10:17 2018 +1300 Some minor cleaning up. commit 56495034f94fbdfe6cee7cfcd9567ff1f4c36a9d Author: Alan Garny Date: Tue Nov 27 15:46:19 2018 +1300 Some minor cleaning up. commit 750047aac551de17924ca7107b4627f20f3d81d3 Author: Alan Garny Date: Tue Nov 27 14:07:53 2018 +1300 Simulation Experiment view: properly show the progress of the import of several files (#1845). commit 6f8952a706091b3afb770b9bac099e847b325307 Author: Alan Garny Date: Tue Nov 27 13:53:05 2018 +1300 Simulation Experiment view: only have one connection for data store importers (#1845). commit 5232ae8e28733300d7dc7b61df5756b67d183e6b Author: Alan Garny Date: Tue Nov 27 13:51:47 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. commit b26fa447bac459395daf4185e5d2e933f94712a9 Merge: 8e930a0f1 8ab1487c3 Author: Alan Garny Date: Tue Nov 27 13:00:35 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 8ab1487c35e741299c41eb0a81aabb233b2fd0b1 Merge: 11c7c5a92 4555b1150 Author: Alan Garny Date: Tue Nov 27 12:55:42 2018 +1300 Various minor improvements. commit 4555b1150a4abbc525425f1dbc231eb4c85cacc0 Author: Alan Garny Date: Tue Nov 27 12:04:57 2018 +1300 Simulation Experiment view: only have one connection for data store exporters. commit 3c6f7601c2818b1cf4d9a527b03c622a121b6eed Author: Alan Garny Date: Tue Nov 27 12:01:46 2018 +1300 Data store interface: allow for the URI of a data store to be empty. This will prove necessary for importing data (see issue #1845) and should, in fact, be allowed just in case. commit 424ef2e04e79d7ae1d4c360e072940241cb8f91c Author: Alan Garny Date: Tue Nov 27 11:59:33 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. This is currently of no use to us, but it might come handy (and definitely will be when importing data; see issue #1845). commit 7afb3724a45aa5060ed2524199a005240da83dc5 Author: Alan Garny Date: Tue Nov 27 09:47:05 2018 +1300 Core plugin: added another version of our doNothing() method. That version can indeed come handy when testing things where we need a fixed delay, for example. commit 8e930a0f131b377d966d1097d8b6ff21e40c81af Merge: c1b5564f0 11c7c5a92 Author: Alan Garny Date: Tue Nov 27 09:24:22 2018 +1300 Merge branch '\''master'\'' into issue1845. commit c1b5564f06d331fbe8149dba98c832f6286d8405 Author: Alan Garny Date: Tue Nov 27 09:22:04 2018 +1300 Simulation support: make sure that our imported data eventually get freed (#1845). commit 11c7c5a9279695584399aaa8eadcbb83070ce8dd Author: Alan Garny Date: Mon Nov 26 19:50:44 2018 +1300 Some minor cleaning up. commit 7eae841e2d3fd7321b2aef2b93d812367291fac1 Author: Alan Garny Date: Mon Nov 26 19:04:46 2018 +1300 CSV data store: can now import a CSV file to a data store (#1845). commit ca185e5fd72fc51919ef2ef8bd4b2ba33048f113 Merge: 820e90ec2 f321a5419 Author: Alan Garny Date: Mon Nov 26 18:26:32 2018 +1300 Merge branch '\''master'\'' into issue1845. commit f321a5419bd3fe2e626dd024e71990e2806a8bb2 Merge: c53a9866c d4390c868 Author: Alan Garny Date: Mon Nov 26 18:25:06 2018 +1300 Some minor cleaning up. commit d4390c868d9f2ef2a86a177151217b3c7de824e8 Author: Alan Garny Date: Mon Nov 26 17:54:23 2018 +1300 Some minor cleaning up. commit 820e90ec2deea7f3e20991e211444c7fac79a7e9 Merge: daf83cd89 c53a9866c Author: Alan Garny Date: Mon Nov 26 15:35:42 2018 +1300 Merge branch '\''master'\'' into issue1845. commit c53a9866c4ca0b41907ac603a1b80c10caaedae1 Author: Alan Garny Date: Mon Nov 26 15:34:22 2018 +1300 Some minor cleaning up. commit 6cb551a2c50039e7624f2840bcdd187f18669689 Author: Alan Garny Date: Mon Nov 26 15:33:30 2018 +1300 Some minor cleaning up. commit daf83cd89b0af4270794c07773e787dd1da8ebfc Author: Alan Garny Date: Mon Nov 26 14:08:46 2018 +1300 Simulation Experiment view: can now "import" some data (#1845). Everything is in place. Now, we just need to do the actual import. commit 626c2bf795ea0c491732fbc1fda1912993e6b506 Merge: 537eaf713 1b7d12497 Author: Alan Garny Date: Mon Nov 26 13:59:36 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 1b7d1249784929079ccc2be3fa7ab5141bb68515 Merge: b87d96b9d ecc6c6e59 Author: Alan Garny Date: Mon Nov 26 13:58:51 2018 +1300 Some minor cleaning up. commit 537eaf713007a4a883015e3f07f19268edef7308 Author: Alan Garny Date: Mon Nov 26 13:22:30 2018 +1300 Simulation support: added an instance of our new SimulationImportedData class to our Simulation class (#1845). commit f2d54a1cb82ce11d104fdb96c430b6fbd5063ea3 Author: Alan Garny Date: Mon Nov 26 13:20:41 2018 +1300 Data store interface: added support for the import of data (#1845). commit ecc6c6e59c15602f5008cc43d897b4b024e02202 Author: Alan Garny Date: Mon Nov 26 13:03:56 2018 +1300 Some minor cleaning up. commit 9d66081952b6d9d69162c0c72b31ee9d15b44406 Author: Alan Garny Date: Mon Nov 26 11:56:54 2018 +1300 Some minor cleaning up. commit e60eaaa7a0f3c1f05d8662c33c138f35618c201a Merge: 0278a3c9c b87d96b9d Author: Alan Garny Date: Mon Nov 26 11:29:59 2018 +1300 Merge branch '\''master'\'' into issue1845. commit b87d96b9dad4280e55b52e1d6d381fd9ef4e48f0 Author: Alan Garny Date: Mon Nov 26 11:28:52 2018 +1300 Some minor cleaning up. commit 0278a3c9cb009d8c83f65fcf33759617d49d4bf7 Merge: 3d2d55d5d 75c51db3e Author: Alan Garny Date: Mon Nov 26 10:45:05 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 75c51db3e9f6b9fa611ee52f19aaae0297d24492 Merge: 7c77ed232 5919dec23 Author: Alan Garny Date: Mon Nov 26 10:42:33 2018 +1300 Some minor cleaning up. commit 5919dec23f30fdc4d6d67e9117f0128684022352 Author: Alan Garny Date: Mon Nov 26 10:22:56 2018 +1300 Some minor cleaning up. commit 65ff0719082dabfa00be565af6c4d26cbf9c1b80 Author: Alan Garny Date: Mon Nov 26 10:18:28 2018 +1300 Some minor cleaning up. commit a8507895755b906a35a886d75df7b35aabb6f794 Author: Alan Garny Date: Mon Nov 26 10:16:45 2018 +1300 Simulation support: created a simple SimulationObject from which SimulationData and SimulationResults inherit. commit 3d2d55d5d8813410672fa71fc13af49a271e806b Merge: 72f65a526 7c77ed232 Author: Alan Garny Date: Fri Nov 23 19:42:35 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 7c77ed232c648288f9d98b0f752d20e9b0e81894 Merge: ec91ce0fb 838409f51 Author: Alan Garny Date: Fri Nov 23 19:41:57 2018 +1300 Simulation Experiment view: improved our delay feature. commit 838409f51bd48eb48300488db94a8141451fa7bc Author: Alan Garny Date: Fri Nov 23 19:16:46 2018 +1300 Some minor cleaning up. commit fe9bc700120d59d09c3fc1647919b374c2c56010 Author: Alan Garny Date: Fri Nov 23 19:05:01 2018 +1300 doNothing(): make it slower and real time when it comes to its number of loops. We used to pass a value of 100*delay to doNothing(), but it’s better to slow doNothing() itself and we now do so by slowing it down by 1,000, i.e. 10 times slower than it used to be (to account for faster computers). Also, we now pass a pointer to doNothing() so that it can adapt to real-time changes to our delay. commit 72b16012f98cb68985f346ae3479b0d940b2fc4b Author: Alan Garny Date: Fri Nov 23 19:02:08 2018 +1300 Reverted to a delay of 1,000,000. commit 83d929ba9ef880532973738a15b29412289730e3 Author: Alan Garny Date: Fri Nov 23 18:49:31 2018 +1300 doNothing(): offers to exit our empty loop. commit 6431812c13a13a56c08255fe1bb5e1edba7ca14e Author: Alan Garny Date: Fri Nov 23 18:47:24 2018 +1300 Increased our delay value to 1,000,000,000 from 1,000,000. Indeed, computers are quite a bit faster nowadays, so… commit 37f553d6cb525e3396b47c2b266c7b572c4593d1 Author: Alan Garny Date: Fri Nov 23 18:44:59 2018 +1300 Increased our delay value to 1,000,000,000 from 1,000,000. Indeed, computers are quite a bit faster nowadays, so… commit 72f65a526e6cde1e882442636b44c074edf2c751 Merge: fd718c870 ec91ce0fb Author: Alan Garny Date: Fri Nov 23 16:29:31 2018 +1300 Merge branch '\''master'\'' into issue1845. commit ec91ce0fbc11962802fd50c2d0e699a1d79dd8ae Merge: 569225d3b f1ae1a581 Author: Alan Garny Date: Fri Nov 23 16:28:42 2018 +1300 Improved our threaded code. commit f1ae1a581f0497e758d6841951c1e30f4f5d8d49 Author: Alan Garny Date: Fri Nov 23 15:59:56 2018 +1300 Data store interface: make all of our classes inherit from QObject. We had to do it for our DataStoreData class (so we could deleteLater() it), so we may as well do it for our other classes, if anything to be consistent. commit 7025cce0ea3e03989d5248502705b26104a0fb1f Author: Alan Garny Date: Fri Nov 23 15:56:18 2018 +1300 Simulation Experiment view: free up our data store data once we are done with it. commit b754d76665908aa4c9992e5e65f6166921223cde Author: Alan Garny Date: Fri Nov 23 15:22:43 2018 +1300 Some minor cleaning up. commit 95a1768311b5d451ff1fa3b20777d9f084ff959d Author: Alan Garny Date: Fri Nov 23 15:22:21 2018 +1300 Simulation support: make proper use of threads. commit c293e657eb87d31afd1284a49b20e6e91a599b51 Author: Alan Garny Date: Fri Nov 23 15:13:24 2018 +1300 Some minor cleaning up. commit c53f02694f44321713a6a82c817d715cfb324d20 Author: Alan Garny Date: Fri Nov 23 15:10:53 2018 +1300 Some minor cleaning up. commit eae268d7cf0e2eb2a73053ec0e83e00b009cc232 Author: Alan Garny Date: Fri Nov 23 14:53:08 2018 +1300 Some minor cleaning up. commit e5acf3d1ed222eb35d13da54ff2d60ffd933904b Author: Alan Garny Date: Fri Nov 23 14:49:12 2018 +1300 Some minor cleaning up. commit 114d8f5675fb96430f5d19ff15f2c8ea309b54d5 Author: Alan Garny Date: Fri Nov 23 14:44:29 2018 +1300 Some minor cleaning up. commit 521fc2212d856dc75acdb5461e206ffb289742db Author: Alan Garny Date: Fri Nov 23 13:09:17 2018 +1300 Some minor cleaning up. commit 5526d6cfc7f9a890ccf0ed91e86e17cf6a8a413e Author: Alan Garny Date: Fri Nov 23 12:05:04 2018 +1300 Data store exporters: make proper use of threads. commit d28527d02786d3cd7749af33034bfc88e7f7b433 Author: Alan Garny Date: Fri Nov 23 11:03:15 2018 +1300 Some minor cleaning up. commit 1d88bbaebd8d7a2925b04fbbbbaa07e7c1e5dfc4 Author: Alan Garny Date: Fri Nov 23 10:42:11 2018 +1300 XslTransformer: make proper use of QObject::deleteLater(). commit 8db42808be905bf0dea9d3892a56a563e0cf2831 Author: Alan Garny Date: Thu Nov 22 18:35:27 2018 +1300 XslTransformer: make proper use of QObject::deleteLater(). commit 8aa8dcd8c2d875eeb8b12ba8c20d8cbbb27a1895 Author: Alan Garny Date: Thu Nov 22 18:28:50 2018 +1300 XslTransformer: make proper use of QObject::deleteLater(). commit 6598b26ded3490f4568efd813da9a3a697ca6762 Author: Alan Garny Date: Thu Nov 22 18:28:18 2018 +1300 XslTransformer: make proper use of QObject::deleteLater(). commit 0f17a0f5a5c0456f3345e33415b1617da610817c Author: Alan Garny Date: Thu Nov 22 18:14:03 2018 +1300 XslTransformer: make proper use of QThread::deleteLater(). commit fd718c870e70166271bd40fc2d29d7c74ff268c3 Author: Alan Garny Date: Thu Nov 22 16:12:50 2018 +1300 Simulation Experiment view: give our importDataFile() method access to the right data store interface (#1845). commit ee7b05cb95d956e8ce70863bb14b6ebda3cb2be2 Author: Alan Garny Date: Thu Nov 22 15:58:38 2018 +1300 Simulation Experiment view: give our importDataFile() method access to the right data store interface (#1845). commit a87e516667bc3ed3826f238f8a2330e1090d0d99 Author: Alan Garny Date: Thu Nov 22 15:27:25 2018 +1300 Simulation Experiment view: can now "import" a data file using the button (#1845). commit cfa60dc0012b785d6bca698c67ece1cf13b47c23 Merge: 17c59f471 569225d3b Author: Alan Garny Date: Thu Nov 22 15:12:54 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 569225d3b9c835e8e8ef69e24e4e1a24d7c419e9 Author: Alan Garny Date: Thu Nov 22 15:11:14 2018 +1300 Remove duplicate files from the list of files we want to open. commit 17c59f471089e0bbc38346157bfec7c7aa2caf77 Author: Alan Garny Date: Thu Nov 22 14:49:34 2018 +1300 Can now drag & drop a valid data store file (#1845). Only CSV files work for now since BioSignalMLDataStorePlugin::isFile() has yet to be implemented. commit af32099c34deff3978e04f6347dcea3c27c3757a Merge: 58e328464 dc7778a0b Author: Alan Garny Date: Thu Nov 22 14:41:45 2018 +1300 Merge branch '\''master'\'' into issue1845. commit dc7778a0bef54404b9cacf83bc1d099d6000dc92 Merge: 1132497ed 4de4e2c18 Author: Alan Garny Date: Thu Nov 22 14:33:52 2018 +1300 Some minor cleaning up. commit 4de4e2c18be471805aaff7111011f752a33a4f56 Author: Alan Garny Date: Thu Nov 22 14:15:19 2018 +1300 Some minor cleaning up. commit 7ed5af0d8143ec0fb5f5599c611d330537725e69 Author: Alan Garny Date: Thu Nov 22 13:38:15 2018 +1300 Some minor cleaning up. commit 58e328464b9680c1b8bcf5d72474b2553d47220e Author: Alan Garny Date: Thu Nov 22 10:47:43 2018 +1300 Disinguish between plugins that support the file type interface and those that also support the data store interface (#1845). commit 1a05ce09ff7427bca5bbe3c44f84936c92ec8b5d Merge: e6a14b040 1132497ed Author: Alan Garny Date: Thu Nov 22 10:39:40 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 1132497ed3d256ee53703a3ef0d03d7e39355ff8 Author: Alan Garny Date: Thu Nov 22 10:37:58 2018 +1300 Some minor cleaning up. commit e6a14b040d5cc00708f61ea207e35de781ec59dd Merge: 7278ead4f ffde43891 Author: Alan Garny Date: Thu Nov 22 09:10:45 2018 +1300 Merge branch '\''master'\'' into issue1845. commit ffde43891147571e202374e39898e0734dfbad43 Merge: 3460b302c e7a6e9430 Author: Alan Garny Date: Thu Nov 22 09:08:39 2018 +1300 Some minor cleaning up. commit e7a6e9430b8f76d8203da1f36fc27b2d0923c660 Author: Alan Garny Date: Wed Nov 21 18:00:56 2018 +1300 Some minor cleaning up. commit ef7ad48a5b9f5b594461d6557bea3361f6452ce4 Author: Alan Garny Date: Wed Nov 21 17:40:06 2018 +1300 Some minor cleaning up. Indeed, by default, drag & drop is not enabled by default, so no point in disabling it… commit 7278ead4f0a60b793845cda4aace1df48b920f40 Merge: 90da948e0 3460b302c Author: Alan Garny Date: Wed Nov 21 17:27:40 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 3460b302c637e920482e3f0fd7cfec841b3dbcca Merge: 4b81bda83 0a86892b2 Author: Alan Garny Date: Wed Nov 21 17:26:31 2018 +1300 Some minor cleaning up. commit 0a86892b210cdfa80dcfdf08c61e5908d27c6793 Author: Alan Garny Date: Wed Nov 21 16:47:31 2018 +1300 Some minor cleaning up. commit 6cb4cd2f6c04347d7c0b3c340afee787098a531f Author: Alan Garny Date: Wed Nov 21 16:32:14 2018 +1300 Some minor cleaning up. commit 90da948e097a8a4e45819d3e2a5f9474038601e2 Author: Alan Garny Date: Wed Nov 21 14:32:24 2018 +1300 Make use of the information available in the file type interface of our CSV and BioSignalML data stores (#1845). commit 2299c3c5fe3ffb2bb2eea7300a6a7aa9f4ca08e1 Author: Alan Garny Date: Wed Nov 21 13:30:24 2018 +1300 Keep track of the file type interface of our CSV and BioSignalML data stores (#1845). commit 5297ee177f563cfbbb0ff9e20cccbde10a7c5532 Merge: 0586da731 4b81bda83 Author: Alan Garny Date: Wed Nov 21 13:09:20 2018 +1300 Merge branch '\''master'\'' into issue1845. commit 4b81bda837edb25bf942c8823d5d87cfc95ecf65 Merge: dd6a04ac0 7d606f16e Author: Alan Garny Date: Wed Nov 21 13:08:34 2018 +1300 Some minor cleaning up. commit 7d606f16ef0d0d08c89f43aa601b024c1c30b93d Author: Alan Garny Date: Wed Nov 21 12:14:29 2018 +1300 Some minor cleaning up. commit 22e8c9ccfa74ef4a8cbc98bf44993a48a5cacaed Author: Alan Garny Date: Wed Nov 21 11:43:22 2018 +1300 Some minor cleaning up. commit 765d9628ee6052b6f3618be407f458f74dcd1411 Author: Alan Garny Date: Wed Nov 21 11:30:18 2018 +1300 Some minor cleaning up. commit 0586da7316679a520dc44861c72fc28885ab64a5 Author: Alan Garny Date: Wed Nov 21 11:21:46 2018 +1300 Added the file type interface to our CSV and BioSignalML data store plugins (#1845). commit 6f156cf669224e49fd0908f26b4a37e43d5bb99b Merge: 5a315b642 dd6a04ac0 Author: Alan Garny Date: Wed Nov 21 10:12:04 2018 +1300 Merge branch '\''master'\'' into issue1845. commit dd6a04ac0f35ce275e86acf957b334a10a40c97a Merge: 97346c191 c527b5591 Author: Alan Garny Date: Wed Nov 21 10:11:15 2018 +1300 OpenSSL: upgrade to version 1.0.2q (closes #1883). commit c527b5591224e78d6b82740f817aa02a34167125 Author: Alan Garny Date: Wed Nov 21 09:55:02 2018 +1300 Don'\''t only build our OpenSSL package (#1883). commit 021698d6f307a97a66d58c9abf2db7eec373f02e Author: Alan Garny Date: Wed Nov 21 09:54:25 2018 +1300 Slight updates to our downloads pages (#1883). commit 704a16d2392eecfc05fc27aa8c03318fdef8a520 Author: Alan Garny Date: Wed Nov 21 09:54:10 2018 +1300 OpenSSL package: binaries for version 1.0.2q (#1883). commit 6cfaa118163a00e058fd9a3cd84104ec863528f4 Author: Alan Garny Date: Wed Nov 21 09:27:22 2018 +1300 Only build our documentation if Python and Sphinx are available. commit d796389a69dfa67878e2bed9156b169ec7bb92af Author: Alan Garny Date: Wed Nov 21 09:13:09 2018 +1300 OpenSSL: upgraded to version 1.0.2q (#1883). commit 14939fdaefbd9389a26dab414407ae59c4b33bbb Author: Alan Garny Date: Wed Nov 21 09:12:50 2018 +1300 Only build our OpenSSL package (#1883). commit 5a315b642cea181feba0c073c8e670da324a898d Merge: 15c968b2c 97346c191 Author: Alan Garny Date: Tue Nov 20 19:05:00 2018 +1300 Merge branch '\''master'\'' into issue1845 commit 97346c191589737904a5065c972e7f3f56f69e6e Merge: d7b3dfa30 712da78d8 Author: Alan Garny Date: Tue Nov 20 19:00:07 2018 +1300 Some minor cleaning up. commit 15c968b2cc490ceca2e6a7f2e96e1a71bc23976a Author: Alan Garny Date: Tue Nov 20 18:03:32 2018 +1300 Simulation Experiment view: added a data import button (#1845). commit 712da78d8014789513b47ae1e33035144c8491ea Author: Alan Garny Date: Tue Nov 20 17:53:23 2018 +1300 Some minor cleaning up. commit 9ff5e8e0d900781107f185a256599c4748553381 Author: Alan Garny Date: Tue Nov 20 17:32:19 2018 +1300 Some minor cleaning up. commit d7b3dfa300f43bf0e5c6640cbc3fd41638814091 Merge: 5bcd02763 efcddb163 Author: Alan Garny Date: Mon Nov 19 20:02:39 2018 +1300 New snapshot. commit efcddb163e683b006491f51928df5970e57d19cc Author: Alan Garny Date: Mon Nov 19 19:44:27 2018 +1300 New snapshot. commit 5bcd02763fa6b81c169e12c95c9193d53a252ddd Merge: 3f683c94a 26a950533 Author: Alan Garny Date: Mon Nov 19 19:41:35 2018 +1300 Slight improvement to our what is new page. commit 26a95053388f6f61c513bc192f83982f7c584441 Author: Alan Garny Date: Mon Nov 19 19:24:29 2018 +1300 Slight improvement to our what is new page. commit 3f683c94a4bd858b16b0ed4286300c51bdb7fb09 Merge: faf63f769 944e530e8 Author: Alan Garny Date: Mon Nov 19 17:27:16 2018 +1300 Various updates to our what is new page. commit 944e530e870629109ff0bcaa425d3d05ad7730a3 Author: Alan Garny Date: Mon Nov 19 16:27:15 2018 +1300 Various updates to our what is new page. commit faf63f769f97ab7faecde88f46ec63684ffb7d83 Merge: 53a6f61e9 6bbe7c377 Author: Alan Garny Date: Mon Nov 19 13:18:10 2018 +1300 Windows: OpenGL is needed at all times. commit 6bbe7c377af7bb8e9747dd20998a7e708630cab9 Author: Alan Garny Date: Mon Nov 19 11:56:06 2018 +1300 Windows: OpenGL is needed at all times. Indeed, even if we don’t need as such (as would be the case if we were to use Zinc), it is still somehow needed…!? commit 53a6f61e92361ef87dc98254caa489b1bb093e4c Merge: dae11f58d 68ef10465 Author: Alan Garny Date: Mon Nov 19 10:56:46 2018 +1300 Mesa library: simplified things a bit. commit 68ef1046550de6364c151962dcfb8612ebd0e15f Author: Alan Garny Date: Mon Nov 19 10:40:27 2018 +1300 Downloads page: mention the license for each version/snapshot of OpenCOR. commit ead6672f580fd62af1081f46b8b85aa0142f55fc Author: Alan Garny Date: Mon Nov 19 09:39:12 2018 +1300 Mesa library: simplified things a bit. commit dae11f58d6b133df7a63195f6e9bb7095ddd87bd Merge: 871f83a38 9e6067e55 Author: Alan Garny Date: Sun Nov 18 19:23:12 2018 +1300 Some minor cleaning up and updated Mesa to version 18.2.5 (on Linux). commit 9e6067e550d18a49158e4d99a58115dc12554421 Author: Alan Garny Date: Sun Nov 18 18:50:38 2018 +1300 Don'\''t build Mesa anymore. commit 2a2cb8816bf16310ab9f925e9c91b9cf2640e975 Author: Alan Garny Date: Sun Nov 18 18:47:55 2018 +1300 Mesa 3D: binaries for version 18.2.5. commit 8a95a012c7eee9b9fb8f5b0bf37bf329117dfa7c Author: Alan Garny Date: Sun Nov 18 18:47:32 2018 +1300 Prerequisites for Mesa 3D. commit 928f00c33d4b82ffb8de807f13a264b1507ae57a Author: Alan Garny Date: Sun Nov 18 18:19:43 2018 +1300 Some minor cleaning up. commit 3afb815489e3226c86989e73db46eb06b4b5def8 Author: Alan Garny Date: Sat Nov 17 23:50:42 2018 +1300 Temporarily build the Mesa library. commit 3c1b2b86959dcdaccbc0af04f767a2d81cce6ff7 Author: Alan Garny Date: Fri Nov 16 20:03:50 2018 +1300 Some minor cleaning up. commit 91207b99cfbffa84b9db5aa86b680f52ac3fd130 Author: Alan Garny Date: Fri Nov 16 12:00:59 2018 +1300 Upgraded Mesa to version 18.2.5. commit b7d9cce96358de3faf22f2136a4cc3a18a8c83b9 Author: Alan Garny Date: Fri Nov 16 11:37:46 2018 +1300 Only have OpenGL support if really needed. commit f5829a9155be4ca460a64bee286eadef8418e0fe Author: Alan Garny Date: Fri Nov 16 11:34:26 2018 +1300 Some minor cleaning up. commit 8590b3011e328d3f6d1e99403cf8b2c6acebdd5e Author: Alan Garny Date: Fri Nov 16 10:36:38 2018 +1300 Only have OpenGL support if really needed. commit 3fe1a4db70c5ed59ca280e934572fd46e8d82766 Author: Alan Garny Date: Fri Nov 16 10:28:13 2018 +1300 Only have OpenGL support if really needed. commit 4119e418d26093654bc0f355166638065e303458 Author: Alan Garny Date: Fri Nov 16 10:20:39 2018 +1300 Some minor cleaning up. commit 8354369e2df10ba9262cead4fcbbd2d0a7d8cd27 Author: Alan Garny Date: Fri Nov 16 10:06:26 2018 +1300 Some minor cleaning up. commit db36f196e3dc81ceb9770b0fa0c283197473a296 Merge: 0cb8c853e 871f83a38 Author: Alan Garny Date: Thu Nov 15 16:15:19 2018 +1300 Merge branch '\''master'\'' into issue1801. commit 871f83a38e11269d19cc7dbdbd1875e9b937ab79 Merge: 6f1d9d626 281cf023b Author: Alan Garny Date: Thu Nov 15 16:11:40 2018 +1300 Converted (and updated) the documentation to reStructuredText (closes #1544). commit 281cf023b462d10868434e3371f19778e8e95248 Author: Alan Garny Date: Thu Nov 15 15:00:25 2018 +1300 Slight update to our downloads page (#1544). commit 101e61901e0292571f3069da45cddf22e64f9235 Merge: c043226cd 6f1d9d626 Author: Alan Garny Date: Wed Nov 14 11:44:22 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 6f1d9d6269cc9a1c352d5a04c9f044368606cdda Author: Alan Garny Date: Wed Nov 14 11:42:45 2018 +1300 Some minor cleaning up. commit c043226cdb9f1f2215e939410e24e5238a4a1c00 Merge: a4f0d20d7 4b788b4c2 Author: Alan Garny Date: Wed Nov 14 11:18:10 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 4b788b4c25b568f08aed9cb6627b915c9f585c2f Merge: 1130eec3a ebf2c1cc8 Author: Alan Garny Date: Wed Nov 14 11:17:30 2018 +1300 Some minor cleaning up. commit ebf2c1cc82a50966a157853c13bf5d9ba339cfff Author: Alan Garny Date: Wed Nov 14 10:56:59 2018 +1300 Slight updates to our test COMBINE archives. commit 21f5aa7b7351b45c487e10b52431de448d3b3b51 Author: Alan Garny Date: Wed Nov 14 10:55:33 2018 +1300 Slight updates to our test SED-ML files. commit a4f0d20d73e01d9a1f928aaa521fb4c21b655fd0 Merge: 83b0361dc 1130eec3a Author: Alan Garny Date: Tue Nov 13 15:28:23 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 1130eec3a46ab2540e7e981f0e826fb8ef66e897 Merge: 739d093e2 cf937ebc4 Author: Alan Garny Date: Tue Nov 13 15:27:34 2018 +1300 Some minor cleaning up and improvements. commit cf937ebc42f59ea7b3a23683adb78a72301a6003 Author: Alan Garny Date: Tue Nov 13 14:55:14 2018 +1300 PMR Workspaces window: try to Git push again if it previously failed. commit ff50166da3bc9015e58bb05d4e52f34603041c14 Author: Alan Garny Date: Tue Nov 13 14:19:40 2018 +1300 Some minor cleaning up. commit f129087f0c838acd4181d4161a75add3146123a7 Author: Alan Garny Date: Tue Nov 13 14:10:26 2018 +1300 PMR Workspaces window: make sure that we propagate up the status of a folder. commit 8b9c6dd94bb13e9fc16adaaccfc910a28c438340 Author: Alan Garny Date: Tue Nov 13 09:53:48 2018 +1300 Some minor cleaning up. commit 83b0361dcb00e734bc3e6548008f04e5572e0e82 Merge: b2662ef19 739d093e2 Author: Alan Garny Date: Mon Nov 12 17:48:29 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 739d093e2173108e0eb1734d30d6b8b9f76a90ef Merge: 881727c73 d4f05a056 Author: Alan Garny Date: Mon Nov 12 17:47:30 2018 +1300 General: properly keep track of the sizes of some splitters (closes #1871). commit d4f05a056c1e7961c24d29c9cbfe11fc51ba533d Author: Alan Garny Date: Mon Nov 12 17:31:31 2018 +1300 Slight update to our downloads page (#1871). commit b8b8809f0c80688600b9f0a3f950403408941772 Author: Alan Garny Date: Mon Nov 12 17:29:57 2018 +1300 General: properly keep track of the sizes of some splitters (#1871). commit a2314300f05b953e1ee437053576f4b5c0a16d52 Author: Alan Garny Date: Mon Nov 12 17:27:26 2018 +1300 Some minor cleaning up. commit b2662ef1932961fc612fb07fd385182497b3b520 Merge: 5276a438d 881727c73 Author: Alan Garny Date: Thu Nov 8 18:29:01 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 881727c730feb3c765103eabcbf779b658e22f6e Merge: c47feab21 3dba9231c Author: Alan Garny Date: Thu Nov 8 18:28:18 2018 +1300 Some minor improvement and fix. commit 3dba9231cbc2482afd7b7a20d9eceec01ef51a73 Author: Alan Garny Date: Thu Nov 8 18:09:30 2018 +1300 PMR Workspaces window: don'\''t remove the iterator for an unknown workspace! Indeed, this crashes OpenCOR, as experienced when I had a local copy of one of my workspaces and then got Tommy to delete all of my workspaces, then started OpenCOR and… BOOM! commit 08c96886b7c31c2dd636d2e4e17b7e768caa7c83 Author: Alan Garny Date: Thu Nov 8 18:07:29 2018 +1300 PMR Workspaces window: make sure that the path of a new workspace is shown in a native way. commit 5276a438d7721428c6b1b7f043f102b6237e0482 Author: Alan Garny Date: Thu Nov 8 18:09:30 2018 +1300 PMR Workspaces window: don'\''t remove the iterator for an unknown workspace! Indeed, this crashes OpenCOR, as experienced when I had a local copy of one of my workspaces and then got Tommy to delete all of my workspaces, then started OpenCOR and… BOOM! commit d4e083f4b591393afeb593f1a87746411013a158 Author: Alan Garny Date: Thu Nov 8 18:07:29 2018 +1300 PMR Workspaces window: make sure that the path of a new workspace is shown in a native way. commit 14cefbe2572d397f5fc6a2a325c46ec6eb37dfc3 Merge: 366450903 c47feab21 Author: Alan Garny Date: Thu Nov 8 17:23:11 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c47feab217d8053106e985f27ce067efbf0b2624 Merge: 01c384a2d bd67c3a29 Author: Alan Garny Date: Thu Nov 8 17:22:16 2018 +1300 Some minor cleaning up. commit bd67c3a295fbd14076c38ef5aa03ae688d7cf162 Author: Alan Garny Date: Thu Nov 8 16:34:16 2018 +1300 Some minor cleaning up. commit 3664509038f7b8dd901876cb2373d9b6037158ac Merge: ce1616cc9 01c384a2d Author: Alan Garny Date: Thu Nov 8 15:31:37 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 01c384a2d761a40bb3cb1d10061aef9036316e55 Merge: 2a8ab5f75 cb5aa5100 Author: Alan Garny Date: Thu Nov 8 15:30:26 2018 +1300 PMR support: cleaned things up with regards to Git status. commit cb5aa5100a0024ace4425f65b19470272e8bdab9 Author: Alan Garny Date: Thu Nov 8 14:59:34 2018 +1300 PMR support: clean things up with regards to Git status. commit ce1616cc9b37e548c0e3a3e945d70b2205bc4c5e Merge: db1136737 2a8ab5f75 Author: Alan Garny Date: Wed Nov 7 18:06:22 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 2a8ab5f75ae31a9d1b7ec0ca5c1db63952c32155 Merge: eea892466 c2759492a Author: Alan Garny Date: Wed Nov 7 18:05:36 2018 +1300 PMR-based windows: make sure they get populated when being shown after having changed instances of PMR (closes #1865). commit c2759492aea80b77cd881885a8878965ad0211a1 Author: Alan Garny Date: Wed Nov 7 17:49:38 2018 +1300 Slight update to our downloads page (#1865). commit d4b75b6ebe0dd8f561df81543674508af5e8466b Author: Alan Garny Date: Wed Nov 7 17:48:04 2018 +1300 PMR-based windows: make sure they get populated when being shown after having changed instances of PMR (#1865). commit db11367374d28dcc05f527a4ae3b16460d26f658 Merge: fa1073e2d eea892466 Author: Alan Garny Date: Tue Nov 6 17:10:03 2018 +1300 Merge branch '\''master'\'' into issue1544. commit eea892466c5a85d25180a79e43e6e99a7a051727 Merge: d212f02de 22af6cbda Author: Alan Garny Date: Tue Nov 6 17:07:24 2018 +1300 Some minor cleaning up. commit 22af6cbdac0c9e21a3eea30784711d8130bafff7 Author: Alan Garny Date: Tue Nov 6 16:49:12 2018 +1300 Some minor cleaning up. commit fa1073e2dfb826550bc5cf2eaf324e4544acef2a Merge: 2772f2976 d212f02de Author: Alan Garny Date: Tue Nov 6 16:19:13 2018 +1300 Merge branch '\''master'\'' into issue1544. commit d212f02dede8feb6030677ace66e6bbb2bfb467d Merge: c7dff4ae1 5c411e12e Author: Alan Garny Date: Tue Nov 6 16:18:09 2018 +1300 Merge pull request #1863 from agarny/issue1862 PMR-based windows: make sure that the spinning wheel is hidden when changing instances of PMR (closes #1862). commit 5c411e12e551c0cf5747b597999cbd2460ccdc8d Author: Alan Garny Date: Tue Nov 6 16:00:03 2018 +1300 PMR support: added a clickable link to the cellml-discussion mailing list. commit 3ba446313149c013c500ad082aa232ef9438a7e3 Author: Alan Garny Date: Tue Nov 6 15:37:10 2018 +1300 Slight update to our downloads page (#1862). commit 1e9ab20a4edcab7e0c7bc840ae7cc6c838f71bef Author: Alan Garny Date: Tue Nov 6 15:32:31 2018 +1300 PMR window: hide the spinning wheel upon changing instances of PMR (#1862). commit 2772f2976a8f43d530e91f23d0735be31e260304 Merge: a95bc333e c7dff4ae1 Author: Alan Garny Date: Sun Nov 4 15:32:22 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c7dff4ae14f6706dea0a8dca193f756239b49495 Merge: c7f164a7f 0c5aed549 Author: Alan Garny Date: Sun Nov 4 15:31:16 2018 +1300 Graph Panel widget: don'\''t skip the first data point (closes #1860). commit c7f164a7fc1e522d591def2ecb89cb1e58754fac Author: Alan Garny Date: Sun Nov 4 15:28:57 2018 +1300 Some minor cleaning up. commit 0c5aed549bc3ff4415769a23b165ec5cf83dffbb Author: Alan Garny Date: Sun Nov 4 15:14:07 2018 +1300 Slight update to our downloads pages (#1860). commit 340af627f42ee3bf1eb53e76beeca5686187d4a0 Author: Alan Garny Date: Sun Nov 4 15:12:15 2018 +1300 Graph Panel widget: don'\''t skip the first data point (#1860). commit c5a9233b0125aa68c351db7e58eeb23f42d3a973 Author: Alan Garny Date: Sun Nov 4 15:09:38 2018 +1300 Some minor cleaning up. commit d7d1c5c0ccee05989786a245fb3663ed9705d941 Author: David Brooks Date: Fri Nov 2 17:47:29 2018 +1300 Python: recalculate `computed constants` and `variables` when parameters are changed. commit 38435d4d7fa2217acb9646ba42cb95b0832f4df7 Author: David Brooks Date: Fri Nov 2 15:02:40 2018 +1300 Minor tweak to comment. commit 0961fb8bfb3a68228fbf71cd2603422d1b4c3bce Author: David Brooks Date: Fri Nov 2 15:02:21 2018 +1300 Fix issues resulting from merge. commit bdaa810b1cad3b5fbb2789692061a4685da9481f Merge: 0cdf8ec0d 4bbd2eea3 Author: David Brooks Date: Fri Nov 2 14:10:44 2018 +1300 Merge branch '\''master'\'' into pythonplugin commit a95bc333eb0ceefe806107bab4e2f830410e3216 Merge: ed7b281c1 4bbd2eea3 Author: Alan Garny Date: Mon Oct 29 15:45:31 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 4bbd2eea3eefeb93ddffc8120edfec991e96a96e Merge: 9931cf2f4 78c2602e4 Author: Alan Garny Date: Mon Oct 29 15:44:46 2018 +1300 New snapshot. commit 78c2602e44032f7d319ab30a974964f4321d9efa Author: Alan Garny Date: Mon Oct 29 15:14:46 2018 +1300 New snapshot. commit 9931cf2f41a425a1cba196c9b33c9bc6436156db Merge: 7dc685b7c 8265f71e6 Author: Alan Garny Date: Mon Oct 29 15:11:45 2018 +1300 libgit2: upgraded to version 0.27.7 (closes #1857). commit 8265f71e6f91019b0a9507c23e8e317fd0b3739c Author: Alan Garny Date: Mon Oct 29 14:54:56 2018 +1300 Don'\''t only build our libgit2 package (#1857). commit e3602f3c3f3f8001c3bcfec16dc03242541e8cd6 Author: Alan Garny Date: Mon Oct 29 14:54:26 2018 +1300 Slight update to our downloads page (#1857). commit c7af3e0eab4c1c4461e6d574d9372e2a40730716 Author: Alan Garny Date: Mon Oct 29 14:54:10 2018 +1300 libgit2: binaries for version 0.27.7 (#1857). commit 3dbb499de4f5b70205609208ba38e8295c77931a Author: Alan Garny Date: Mon Oct 29 14:46:06 2018 +1300 libgit2: upgraded to version 0.27.7 (#1857). commit 0aa201caec164141675c3b4e8ce322973c93bafe Author: Alan Garny Date: Mon Oct 29 14:45:00 2018 +1300 Only build our libgit2 package (#1857). commit 7dc685b7c6295469a88419c52f432d6ad4aff08b Author: Alan Garny Date: Fri Oct 26 22:44:44 2018 +1300 Some minor cleaning up. commit ed7b281c1d8368abaadabdf17fad019e0a089df9 Merge: 7f0b85f0f e3a118509 Author: Alan Garny Date: Fri Oct 26 16:08:43 2018 +1300 Merge branch '\''master'\'' into issue1544. commit e3a11850923d4457637ac8f104cdf0c63e61513c Merge: b1ebcdefc f5e50b401 Author: Alan Garny Date: Fri Oct 26 16:06:38 2018 +1300 Graph Panel widget: prevent OpenCOR from potentially freezing when plotting invalid data (closes #1853). commit f5e50b40195ff520db7381ada7a085d3f7dc232a Author: Alan Garny Date: Fri Oct 26 15:49:54 2018 +1300 Slight update to our downloads page (#1853). commit 73a2ced9877db46674658ad30805e7a0ab443430 Author: Alan Garny Date: Fri Oct 26 15:47:17 2018 +1300 Graph Panel widget: ignore invalid data in GraphPanelPlotGraph::boundingRect() and GraphPanelPlotGraph::boundingLogRect() (#1853). commit 4920bc09bdec534ae23442437a3a95de874a32e3 Author: Alan Garny Date: Fri Oct 26 15:23:18 2018 +1300 Graph Panel widget: now only draw lines and symbols for valid data (#1853). commit 7b3060a4bfb82e520a9e6d64ea44148cc7172723 Author: Alan Garny Date: Fri Oct 26 13:52:46 2018 +1300 Graph Panel widget: default drawLines()/drawSymbols() methods (#1853). commit b1ebcdefcd392cb218e7f0e67ac226e6b4987c1d Merge: 37d332e3a 9257e215c Author: Alan Garny Date: Fri Oct 26 11:05:55 2018 +1300 Qwt: cleaned up the repository. commit 9257e215c7ff7409e74f2cfc05279cc282a7c7c3 Author: Alan Garny Date: Fri Oct 26 10:48:22 2018 +1300 Don'\''t only build our Qwt package. commit c0a742b9a9da9b7e4a97294dd45bf1d9c0e94382 Author: Alan Garny Date: Fri Oct 26 10:47:54 2018 +1300 Qwt package: new binaries. commit 4280a340d981900aec6366b10486174a75f9a90b Author: Alan Garny Date: Fri Oct 26 10:34:36 2018 +1300 Only build our Qwt package. commit 7f0b85f0f1286ec1cd6c7d91fe4852dc3f23f27c Merge: 37fcc0f9d 37d332e3a Author: Alan Garny Date: Thu Oct 25 16:29:13 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 37d332e3a97ca5760efd993f0966f3e195646e47 Merge: 11c34801c fe5577fc7 Author: Alan Garny Date: Thu Oct 25 16:28:10 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens (closes #1850). commit fe5577fc72b8dda4ac37f31598e9ff643d18ad0d Author: Alan Garny Date: Thu Oct 25 15:52:19 2018 +1300 Slight update to our downloads page (#1850). commit a62892e20c90221c497dcfd589124336ce2ab098 Author: Alan Garny Date: Thu Oct 25 15:50:07 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens (#1850). commit 11a0416196fb1d15f82f5c731ad5c4fdef51a887 Author: Alan Garny Date: Thu Oct 25 15:48:10 2018 +1300 Scale standard icons that need to be used in a tab bar widget (#1850). commit 30ec98892437e8069999c7511e45a04123f53a9b Author: Alan Garny Date: Thu Oct 25 15:43:21 2018 +1300 Scale standard icons that need to be used in a tab bar widget (#1850). commit 15c625213bdc92550a3a2072bcf46cf8fa8671a7 Author: Alan Garny Date: Thu Oct 25 15:37:23 2018 +1300 Scale standard icons that need to be used in a tab bar widget (#1850). commit 48a687f3d5c4d9a7e6a4f62f2a184578aa6255d8 Author: Alan Garny Date: Thu Oct 25 14:23:09 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens (#1850). commit 6d463bccea42166dd6424ee8984a80b31d212521 Author: Alan Garny Date: Thu Oct 25 14:03:48 2018 +1300 Standard icon: in the end, we don'\''t want to scale it up to 48x48 pixels (#1850). Indeed, now that we have got issue #1850 fixed (see forthcoming commits), scaling up a standard icon results in a softened icon, making it look quite a bit different than the original standard icon. On macOS, at least. commit 6b7afb9c3c4d50740ec30033fb04c6d4f953c511 Author: Alan Garny Date: Thu Oct 25 13:56:38 2018 +1300 Some minor cleaning up. commit 37fcc0f9d7c4e036d06b7ba6076fae087c216f73 Merge: abe7a8f88 11c34801c Author: Alan Garny Date: Thu Oct 25 11:30:48 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 11c34801cf44a0c9e991f86837246f1cd9485684 Merge: c3f6b6a2e 56cdeb63d Author: Alan Garny Date: Thu Oct 25 11:29:45 2018 +1300 General: recognise macOS Mojave (10.14) (closes #1851). commit 56cdeb63df390f8ceec7d795b3c4299c63b359ff Author: Alan Garny Date: Thu Oct 25 11:05:42 2018 +1300 Slight update to our downloads page (#1851). commit 19ebde8c9d8c34937c69339c1e84101a8cc1acb4 Author: Alan Garny Date: Thu Oct 25 11:04:16 2018 +1300 General: recognise macOS Mojave (10.14) (#1851). commit 974f86b2e63d58b211a2cac5e008586690214ee1 Author: Alan Garny Date: Thu Oct 25 10:52:33 2018 +1300 Some minor cleaning up. commit abe7a8f887c0f6b1d3215d3594c782616723ffff Merge: 2a2c094a7 c3f6b6a2e Author: Alan Garny Date: Tue Oct 23 19:17:10 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c3f6b6a2e8b59ee68162ac29f2f8bb9130c076d7 Merge: 8863c776f 423a64f56 Author: Alan Garny Date: Tue Oct 23 19:16:02 2018 +1300 General: unmanage and (re)manage a new file that has been saved (closes #1846). commit 423a64f5624c959db48b1131bd0cee59d21f2b67 Author: Alan Garny Date: Tue Oct 23 18:58:11 2018 +1300 Slight update to our downloads page (#1848). commit 5bb3776a71f11be3915d59f4d0e170a383919870 Author: Alan Garny Date: Tue Oct 23 18:55:53 2018 +1300 File manager: unmanage and (re)manage a new file that has been saved (#1846). commit 463662c0942fce5cb566f7fceb889e521fc2299e Author: Alan Garny Date: Tue Oct 23 18:40:52 2018 +1300 Some minor cleaning up. commit 8863c776f63c22efeda75af49dc51424cdfbe202 Merge: c4876fc32 d697ed29e Author: Alan Garny Date: Tue Oct 23 10:58:36 2018 +1300 SUNDIALS: upgraded to version 3.2.1 (closes #1847). commit d697ed29e5f40392a2b605e4d08d9e594e781753 Author: Alan Garny Date: Tue Oct 23 09:11:10 2018 +1300 Slight update to our downloads page (#1847). commit 177d0c591cf5ec6e364c2eef65896ef7059aa3fa Author: Alan Garny Date: Tue Oct 23 09:09:30 2018 +1300 Don'\''t only build our SUNDIALS package (#1847). commit 9f77e504d6e0aa6989a86f8e47d9fdfc6e44d8ff Author: Alan Garny Date: Tue Oct 23 09:08:51 2018 +1300 SUNDIALS package: binaries for version 3.2.1 (#1847). commit f1e862453aaa8a0422ead63a7c577bb8d868d145 Author: Alan Garny Date: Tue Oct 23 08:58:13 2018 +1300 SUNDIALS package: upgraded to version 3.2.1 (#1847). commit da86a45cb391ff313491c96e563f8ea217a0815b Author: Alan Garny Date: Tue Oct 23 08:56:26 2018 +1300 Only build our SUNDIALS package (#1847). commit 2a2c094a74800f16216d6b6edf7d321d849796c1 Author: Alan Garny Date: Wed Oct 17 11:04:54 2018 +1300 Added some information about our requirements for generating screenshots for our documentation (#1544). commit 9da5db5f18bb2a8d38ca49556a3420dd7c444a3c Merge: aa29fd520 c4876fc32 Author: Alan Garny Date: Tue Oct 16 15:41:17 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c4876fc323fef4c55a31c32bf48d5bbcb2df4908 Merge: a6c5ca8bc b6a728212 Author: Alan Garny Date: Tue Oct 16 15:39:44 2018 +1300 Provide a method to return a scaled up version of a standard icon. commit b6a72821209f512cb388c75ba9e4186fdbbdfc61 Author: Alan Garny Date: Tue Oct 16 15:03:39 2018 +1300 Provide a method to return a scaled up version of a standard icon. The scaling is needed if we, for instance, need to create an overlay icon. Indeed, the resolution of the overlay is dependent on that of the ico commit aa29fd520f824b1522a1e284060e6ee90622f941 Merge: 51a78bd3d a6c5ca8bc Author: Alan Garny Date: Tue Oct 16 14:24:03 2018 +1300 Merge branch '\''master'\'' into issue1544. commit a6c5ca8bc425fe64cd582caa668a2079167933d6 Merge: 9ca036d90 ddd8dfc6f Author: Alan Garny Date: Tue Oct 16 14:23:03 2018 +1300 Some minor cleaning up. commit ddd8dfc6f0aa37ee2265e58773c4e456db68cf8a Author: Alan Garny Date: Tue Oct 16 13:51:22 2018 +1300 Some minor cleaning up. commit 51a78bd3d1856e5c6ad1bb0ed835658f0f9be0fa Merge: 40896d6ca 9ca036d90 Author: Alan Garny Date: Fri Oct 12 16:33:57 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 9ca036d907760179b6e4f96ef6633c4325f8d540 Merge: c8a178e09 0c2211640 Author: Alan Garny Date: Fri Oct 12 16:32:18 2018 +1300 Cleaning up. commit 40896d6cae9f3599c1c379cf028494ca16633959 Merge: 98568276a 0c2211640 Author: Alan Garny Date: Fri Oct 12 14:56:59 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 0c221164034094512f1a9b2936aee40b87ea24c8 Author: Alan Garny Date: Fri Oct 12 14:56:37 2018 +1300 Moved our test models from doc/developer/functionalTests/res to models/tests. commit 98568276a3c65e33464b39a870d79a5d4052a691 Merge: f1d05c504 9153d871b Author: Alan Garny Date: Fri Oct 12 14:52:54 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 9153d871b2d4c2d0104823d54bcbefdd00619eee Author: Alan Garny Date: Fri Oct 12 14:51:28 2018 +1300 Moved our test models from doc/developer/functionalTests/res to models/tests. commit f1d05c50448c0f0bad217fe3b1bbbbc77eaf6884 Merge: 26bdfb5c0 edf6d7891 Author: Alan Garny Date: Fri Oct 12 12:12:01 2018 +1300 Merge branch '\''master'\'' into issue1544. commit edf6d7891e5c60ce72c8419a83cbecc3975904ab Author: Alan Garny Date: Fri Oct 12 12:10:16 2018 +1300 Some minor cleaning up. commit 26bdfb5c08e8ee9b5e9c1bd9edac3e236821e5b6 Author: Alan Garny Date: Fri Oct 12 12:09:39 2018 +1300 Some minor cleaning up. commit 82180cfbbddd422d634f5da1002857402e1f8da6 Author: Alan Garny Date: Fri Oct 12 12:00:44 2018 +1300 Help window: make sure that we can directly see images. Indeed, right now, we can only see "proper" web pages, not images or anything else while we should be able to see anything that a Web browser supports. commit 8ce0193164c7bbf1cc994d3266d9675e17e859e9 Author: Alan Garny Date: Fri Oct 12 11:56:14 2018 +1300 Some minor cleaning up. commit 937b9d3ffef813ff6eaeee9cae22fd75cc37bab1 Author: Alan Garny Date: Fri Oct 12 11:55:55 2018 +1300 Some minor cleaning up. commit 3a8b3e69f7f2771067cbb38e3ad057aaf9eba9b9 Author: Alan Garny Date: Fri Oct 12 11:55:14 2018 +1300 Some minor cleaning up. commit be2a42011613fdb692a190ba0c0781d85dc1edac Author: Alan Garny Date: Fri Oct 12 11:39:10 2018 +1300 Some minor cleaning up. commit 3afe909ae00f564a1508faa4f073f80f9c539b19 Author: Alan Garny Date: Fri Oct 12 11:30:05 2018 +1300 Silent the output of our documentation generation. commit 74838cee3d0de429ab9c048334679f2b50a09df4 Author: Alan Garny Date: Fri Oct 12 11:25:11 2018 +1300 Some minor cleaning up. commit 20a7944b9d6ae94b9ca363b3061ba0afa2113b25 Author: Alan Garny Date: Fri Oct 12 11:01:54 2018 +1300 Some minor cleaning up. commit e7da264d73e824cf66d85b09d51a746e7d8999dd Author: Alan Garny Date: Fri Oct 12 11:01:32 2018 +1300 Some minor cleaning up. commit 2ace5a94d7e608522e30a449f16b21b74da89287 Merge: 12dffe157 c8a178e09 Author: Alan Garny Date: Thu Oct 11 19:02:55 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c8a178e09e1723a25ce7b08f25d217425b280cbc Merge: c5479f64f e09f6cc58 Author: Alan Garny Date: Thu Oct 11 19:01:50 2018 +1300 libgit2: upgraded to version 0.27.5 (closes #1838). commit e09f6cc585daa564e1d0229a83a19d367d784c48 Merge: f94173c3f cb3c2ab3f Author: Alan Garny Date: Thu Oct 11 18:44:31 2018 +1300 Merge branch '\''master'\'' into issue1838. commit cb3c2ab3f184f7cb9a36447c2103c66e867eb635 Author: Alan Garny Date: Thu Oct 11 18:40:21 2018 +1300 Slight improvement to scripts/genericclean.bat. This is in case one of the files is read-only, which is the case with the MSVC DLLs. I used to manually make them writable, but this approach is better. commit f94173c3f966d0d2b8611d024d73356e047ed188 Author: Alan Garny Date: Thu Oct 11 18:33:07 2018 +1300 Stop building only our libgit2 package (#1838). commit ac736fc25ea205dd450c7621349cd99b14614899 Author: Alan Garny Date: Thu Oct 11 18:30:58 2018 +1300 Slight update to our download page (#1838). commit b76125d3fbdc894005b558210d762e9bc229f9c1 Author: Alan Garny Date: Thu Oct 11 18:30:36 2018 +1300 libgit2: binaries for version 0.27.5 (#1838). commit c093529d88a7d4891dd147028b5b704a8033ccff Author: Alan Garny Date: Thu Oct 11 18:22:10 2018 +1300 Only build our libgit2 package (#1838). commit ff02f1ff42398f393d01b2e93526b4575fef861d Author: Alan Garny Date: Thu Oct 11 17:05:05 2018 +1300 libgit2: upgraded to version 0.27.5 (#1838). commit eb279207a212c9ccfe5cd313472c2c497a2fba25 Author: Alan Garny Date: Thu Oct 11 17:03:02 2018 +1300 Only build our libgit2 package (#1838). commit 12dffe157e9dbed1508221f0c1ed0cdac31f472a Author: Alan Garny Date: Thu Oct 11 10:56:57 2018 +1300 Help window: make sure that our user documentation has been generated (#1544). commit c09522bf341d702164bca32b20053508d97cbc52 Author: Alan Garny Date: Wed Oct 10 17:56:31 2018 +1300 Some minor cleaning up. commit b5fa85a3bc90295a9ea6463ed9fb3ab8e25577ec Author: Alan Garny Date: Wed Oct 10 17:55:03 2018 +1300 Provide a bit of space between the bottom of a page and our copyright. commit 263b3667d43dfc9d73a854c1594c1a424b3eb7e8 Author: Alan Garny Date: Wed Oct 10 13:34:25 2018 +1300 Help window: make sure that our user documentation has been generated (#1544). commit 7cb0ee44be29625a42e5bd0e5f16ee37fae77e11 Author: Alan Garny Date: Wed Oct 10 11:36:54 2018 +1300 Documentation: make sure that we can use the OpenCOR version of Sphinx (#1544). commit e9accb0aceb31a4561ec1c9c59d169af59c053b4 Author: Alan Garny Date: Wed Oct 10 11:18:57 2018 +1300 Some minor cleaning up. commit cb958dc8ba23361d764c0ff52d6609898876e9e6 Author: Alan Garny Date: Wed Oct 10 09:17:50 2018 +1300 Pass our copy of Python to build the user/developer documentation (#1544). commit 72ea0f5fb7b4c049fa3f3c8045dc0635aa729afc Author: Alan Garny Date: Tue Oct 9 17:50:39 2018 +1300 Have our user and developer documentations use our "old" colours (#1544). commit c525c92919f411278c5bca7a23a059ba38621098 Author: Alan Garny Date: Tue Oct 9 17:12:41 2018 +1300 Have our user and developer documentations use our "old" colours (#1544). commit b2cc74b15455b148c71ab2ef71a848ad4c7a3391 Author: Alan Garny Date: Tue Oct 9 16:39:34 2018 +1300 Documentation: require a blue foreground colours for screenshots (#1544). Now that we use our “old” colours for both the user and developer documentation, it is better to use a blue foreground colour for our screenshots. commit 7b02081d834e085de31ddba50306aeab6471f60e Author: Alan Garny Date: Tue Oct 9 16:32:58 2018 +1300 Have our user and developer documentations use our "old" colours (#1544). commit 77e11aaac2c484ae7040cdf85f832e75296b7ad3 Author: Alan Garny Date: Mon Oct 8 17:49:05 2018 +1300 No need for a white desktop background for our screenshots (#1544). commit e81f2ba470c09c6b9a14385b49b33a8af0225f77 Merge: c680ac506 c5479f64f Author: Alan Garny Date: Mon Oct 8 17:24:21 2018 +1300 Merge branch '\''master'\'' into issue1544. commit c5479f64fd585fd66c3818be4bd7215b7efa2a55 Merge: 935e647da 3674176e9 Author: Alan Garny Date: Mon Oct 8 17:23:30 2018 +1300 Main window: removed `&` from different menu items. commit 3674176e9a2966cc69ac07b36ad80f833c0f17a1 Author: Alan Garny Date: Mon Oct 8 17:01:29 2018 +1300 Main window: removed `&` from different menu items. Hopefully, they don’t get used. Indeed, the reason for removing those `&` is that it makes it much faster to create snapshots on Windows by pressing Alt+PrtScn. However, with `&` in our main menu items, it meant that the characters used as a shortcut (i.e. Alt+Char) were underlined, which is not what we want… commit c680ac506ec1cf7c049884ac2db4b72440306f67 Author: Alan Garny Date: Mon Oct 8 14:18:26 2018 +1300 Added a requirement for the colour of title bars in our screenshots (#1544). commit 3a6d403618b819cc393fa7b98c887e40cd201ac0 Author: Alan Garny Date: Mon Oct 8 13:51:35 2018 +1300 Now require a 1920x1080 screen resolution for screenshots (#1544). commit 315a36407d782dd1692aa67dd382850bc2b8f0f8 Merge: c08fe0ec4 935e647da Author: Alan Garny Date: Thu Oct 4 16:30:35 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 935e647da7fed0a721c92d988d4432220d62e0f9 Merge: cc5b20622 7e3f67663 Author: Alan Garny Date: Thu Oct 4 16:14:09 2018 +1300 Merge pull request #1836 from agarny/issue1835 Simulation Experiment view: now have two reset buttons rather than one with a drop-down menu (closes #1835). commit 7e3f6766361e25922959c5066e7dc9863fd61115 Author: Alan Garny Date: Thu Oct 4 15:51:49 2018 +1300 Slight update to our downloads page (#1835). commit 3f1413b60b6c998b2f0378f053c6c2c6d9530b78 Author: Alan Garny Date: Thu Oct 4 15:50:25 2018 +1300 Simulation Experiment view: now have two reset buttons rather than one with a drop-down menu (#1835). commit c08fe0ec4f1ef535b7de170aaa2f8117b4e89e50 Merge: f30a7cdfe cc5b20622 Author: Alan Garny Date: Thu Oct 4 09:35:36 2018 +1300 Merge branch '\''master'\'' into issue1544 commit cc5b20622d53fd7aa23b79f403021de9c264c2a1 Merge: b3ab95621 5fc8553ac Author: Alan Garny Date: Thu Oct 4 09:34:46 2018 +1300 QScintilla: upgraded to version 2.10.8 (closes #1833). commit 5fc8553ac6805b1996ab63246f2a9cffd04ca0d4 Author: Alan Garny Date: Thu Oct 4 09:19:11 2018 +1300 Slight updates to our downloads pages (#1833). commit 5f9c8b079f893e08b48bbb37261e9fd78058581d Author: Alan Garny Date: Thu Oct 4 09:17:04 2018 +1300 Stop building only our QScintilla package (#1833). commit d63c12377fc8860e73abbf44269bda20bc46e8cb Author: Alan Garny Date: Thu Oct 4 09:16:38 2018 +1300 QSctintilla package: binaries for version 2.10.8 (#1833). commit e1ebaa039b388ff807f8e536a34254c8be857547 Author: Alan Garny Date: Thu Oct 4 09:08:26 2018 +1300 QScintilla package: upgraded to version 2.10.8 (#1833). commit ebef061bf2464cede1033e1799f8b3749a9cafe4 Author: Alan Garny Date: Thu Oct 4 09:06:50 2018 +1300 Only build our QScintilla package (#1833). commit 8389e32b8582ed43f038434088f357c3d0921fb0 Author: Alan Garny Date: Thu Oct 4 09:06:04 2018 +1300 QScintilla package: upgraded to version 2.10.8 (#1833). commit a8008af212154d683f4ccdf58cddbbfb040ed8cb Author: Alan Garny Date: Thu Oct 4 08:59:56 2018 +1300 Only build our QScintilla package (#1833). commit f30a7cdfefb2cd1db0dbd924b50e0e7144b69203 Merge: f664ce2c6 b3ab95621 Author: Alan Garny Date: Wed Oct 3 18:07:55 2018 +1300 Merge branch '\''master'\'' into issue1544 commit b3ab956217c1997d2d59861c3a86bee7476a5cb0 Merge: 47aa6d13f 223be9e39 Author: Alan Garny Date: Wed Oct 3 18:01:46 2018 +1300 New snapshot. commit 223be9e391629b9167952a34fb33bcc5a248e0c9 Author: Alan Garny Date: Wed Oct 3 17:47:43 2018 +1300 New snapshot. commit 47aa6d13f10ba1c2527386600249390d16606dcb Merge: aed43b328 b916c9be7 Author: Alan Garny Date: Wed Oct 3 17:45:50 2018 +1300 Some minor cleaning up. commit b916c9be707effc562c2bd839d44d84f0d7587b9 Author: Alan Garny Date: Wed Oct 3 17:26:10 2018 +1300 PMR Workspaces window: make sure that our GUI is up to date. commit 0870d247f2d514dd1872462b6ee6d1b90d99b55c Author: Alan Garny Date: Wed Oct 3 17:14:08 2018 +1300 Some minor cleaning up. commit 9698c3af704e4a1e111f8f61f373d13d65a8e429 Author: Alan Garny Date: Wed Oct 3 17:07:52 2018 +1300 Some minor cleaning up. commit 951e314e3b1c653c56a7d2c4f9aaed2f7c4aa65f Author: Alan Garny Date: Wed Oct 3 16:59:39 2018 +1300 Some minor cleaning up. commit f664ce2c666721fe71626a670a989ce7140b58af Merge: 7acd1773d aed43b328 Author: Alan Garny Date: Wed Oct 3 12:03:29 2018 +1300 Merge branch '\''master'\'' into issue1544 commit aed43b328229cfd7327302397905c355e05ccb67 Merge: 77a0f5321 c051f6fbb Author: Alan Garny Date: Wed Oct 3 12:02:44 2018 +1300 SUNDIALS: upgraded to version 3.2.0 (closes #1829). commit c051f6fbb557cd93977cf7037c809ecb0161cb70 Author: Alan Garny Date: Wed Oct 3 11:47:15 2018 +1300 Slight update to our downloads page (#1829). commit 7d2269c448cce46596dcae0e86e2c0a721c20a04 Author: Alan Garny Date: Wed Oct 3 11:45:35 2018 +1300 Stop building only our SUNDIALS package (#1829). commit 432cbeccec29be1b86bbf918171f20e64ab58648 Author: Alan Garny Date: Wed Oct 3 11:44:53 2018 +1300 SUNDIALS package: binaries for version 3.2.0 (#1829). commit 9973866c48d70e1ccf435ecc914d1bd61e848e62 Author: Alan Garny Date: Wed Oct 3 11:36:53 2018 +1300 SUNDIALS plugin: upgraded to version 3.2.0 (#1829). commit c5412af456b04720cd40809648f7f25544b8b389 Author: Alan Garny Date: Wed Oct 3 11:31:57 2018 +1300 Only build our SUNDIALS package (#1829). commit 7acd1773d3d68946376d9c15ed46968d23aaad26 Author: Alan Garny Date: Wed Oct 3 09:36:38 2018 +1300 Added support for KaTeX (#1544). For Sphinx to generate the correct HTML code, e.g. for :math:`10^{-7}` to be converted to \(10^{-7}\) we “fool” Sphinx by asking it to use MathJax. commit e9c4e910e4a980bca86bc52915d6e7f1ddaa53bf Author: Alan Garny Date: Tue Oct 2 18:40:22 2018 +1300 Added support for KaTeX (#1544). commit 5c1bc836a05e2bc6949f61aa25b995e51c02ec93 Author: Alan Garny Date: Mon Oct 1 15:33:41 2018 +1300 General: can now build OpenCOR on macOS 10.14 (Mojave) (closes #1828). commit c49513b22480d08f9d99ab0f912b866cee32cd89 Merge: 7ffa28676 77a0f5321 Author: Alan Garny Date: Thu Sep 27 11:04:04 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 77a0f5321a959c73b36d0d41ffb1292b9f924224 Merge: 61f11d259 b8d5b13a0 Author: Alan Garny Date: Thu Sep 27 10:40:43 2018 +1200 Fixed a small problem with graph panels not always autoscaling properly (closes #1824). commit b8d5b13a01a31efadefcc6717b68e100ce623d73 Author: Alan Garny Date: Thu Sep 27 10:25:05 2018 +1200 Slight update to our downloads page (#1824). commit 8fd9dc45720daf85856ad05b3c555c929362bfdc Author: Alan Garny Date: Thu Sep 27 10:23:24 2018 +1200 Graph Panel widget: properly handle the effect of data on axes (#1824). commit d2788b627c158ddf4af38e2238607921589d1ac0 Author: Alan Garny Date: Wed Sep 26 18:39:57 2018 +1200 Some minor cleaning up. commit 819b2b5ce4b886355241ded69a7bc549ad432715 Author: Alan Garny Date: Wed Sep 26 17:45:48 2018 +1200 Some minor cleaning up. commit 6fd10f6d55159d07b498fb1ffc6f3663767a8197 Author: Alan Garny Date: Wed Sep 26 17:26:16 2018 +1200 Graph Panel widget: handle the case where we want to optimise a number that is already optimised. The case at hand was when we had a pMin value of -0.3 and a minorStep value of 0.05. You would expect the new value (linear) value of pMin still to be -0.3, but in our particular case it was -0.35 because qFloor(pMin/minorStep) was giving us -7 rather than -6 as we would have expected. So, to go around this problem, we do a fuzzy null check of pMin/minorStep against its integer representation… commit 319750e43663303c549342ccbfda1bb50a626f40 Author: Alan Garny Date: Wed Sep 26 15:03:23 2018 +1200 Some minor cleaning up. commit 138fd2c3db3f17ea4a768b4929429a8e44aa0e79 Author: Alan Garny Date: Wed Sep 26 14:59:33 2018 +1200 Some minor cleaning up. commit 61f11d259a35590d90f4bec36948f2f43f10f87e Merge: 05bef2ff7 24d29503a Author: Alan Garny Date: Wed Sep 26 14:27:50 2018 +1200 PMR Workspaces window: slight update to some warning messages. commit 24d29503afd922cb8e6465d2a0ddebd03d2c1c85 Author: Alan Garny Date: Wed Sep 26 13:30:46 2018 +1200 PMR Workspaces window: slight update to some warning messages. commit 7ffa28676474e70c5b82bf55ff29df18eeaf8fba Merge: c5ead4bf9 05bef2ff7 Author: Alan Garny Date: Mon Sep 24 16:55:29 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 05bef2ff73d60e7f14b4c48d642e362f9a827610 Merge: d0d32f7a3 e30381484 Author: Alan Garny Date: Mon Sep 24 16:54:32 2018 +1200 Various minor fixes/improvements. commit e30381484c60b97d5ae945a0276823c179746b0e Author: Alan Garny Date: Mon Sep 24 16:40:02 2018 +1200 Simulation Experiment view: make sure that reloading a CellML file does indeed clear all graph panels. commit 21ed2a09d8c1910d9d76f3a53418104846985bcc Author: Alan Garny Date: Mon Sep 24 15:48:42 2018 +1200 Simulation Experiment view: can now enable/disable the resetting of states only. commit 6f6c2e43e7562402a6058cebcdc48db55a9b1c42 Author: Alan Garny Date: Mon Sep 24 15:36:27 2018 +1200 Some minor cleaning up. commit 5ebb392b54a3dd43155b36b7e6c9fcb8b3bdbfe1 Author: Alan Garny Date: Mon Sep 24 15:27:54 2018 +1200 Simulation Experiment view: don'\''t do anything if a file has been modified. Until now, if a CellML file had been modified (outside of OpenCOR) and we hadn’t reloaded it, then we enabled our Reset Model Parameters action while there is no need for this. This action should only ever be enabled based on a simulation’s state, not a file’s state. commit 10a9214befcb9850946bf66370cca68d33b5ec01 Author: Alan Garny Date: Mon Sep 24 15:11:59 2018 +1200 Simulation Experiment view: the resetting of model parameters is now more specific (#1815). We potentially need to call recomputeComputedConstantsAndVariables() twice in case some of our constants have been modified. Indeed, recomputeComputedConstantsAndVariables() will compute our computed constants, which are stored in mConstants, and which may depend on the value of some other constants in mConstants. commit d0d32f7a3e5523ccf1442d507b46cb5a99e51a81 Merge: ce83e71c5 4b677cca7 Author: Alan Garny Date: Mon Sep 24 13:19:11 2018 +1200 Graph Panel widget: use 2 as our default graph line width. commit 4b677cca7f88a3068a6fa933f5ab18556b9308c4 Author: Alan Garny Date: Mon Sep 24 11:57:44 2018 +1200 Graph Panel widget: use 2 as our default graph line width. We set it (back) to 1 in commit dddabb7 since a bigger width means that it will be more time consuming to draw and that we didn’t want to use a big width by default (this is particularly noticeable using the noble_model_1962 3.zip file in issue #1806). However, a width of 1 looks really thin while a width of 2 looks just right. Also, it’s not everyday that we run simulations with 1,000,000 data points, so I guess it’s fine to go with a default line width of 2. commit c5ead4bf94c323f5b0b3dc4d668bcfb182e78c47 Author: Alan Garny Date: Mon Sep 24 11:54:08 2018 +1200 Graph Panel widget: use 2 as our default graph line width. We set it (back) to 1 in commit dddabb7 since a bigger width means that it will be more time consuming to draw and that we didn’t want to use a big width by default (this is particularly noticeable using the noble_model_1962 3.zip file in issue #1806). However, a width of 1 looks really thin while a width of 2 looks just right. Also, it’s not everyday that we run simulations with 1,000,000 data points, so I guess it’s fine to go with a default line width of 2. commit 1311ce3cf919dc558f44711919501586a6e81b0a Merge: 3e55ede25 ce83e71c5 Author: Alan Garny Date: Mon Sep 24 11:42:37 2018 +1200 Merge branch '\''master'\'' into issue1544. commit ce83e71c59fd690c8e71110cd2c8ee184baffcfb Merge: 0fb6c790c fea48c9b1 Author: Alan Garny Date: Fri Sep 21 14:59:37 2018 +1200 Simulation Experiment view: made the resetting of model parameters more specific (closes #1815). commit fea48c9b1d28ff3e188b21fe4bdc81cbfb26fbb3 Author: Alan Garny Date: Fri Sep 21 11:49:17 2018 +1200 Slight update to our downloads page (#1815). commit ebf205bd699c6f709ccfa01a6955bd09546bcb05 Author: Alan Garny Date: Fri Sep 21 11:47:23 2018 +1200 Simulation Experiment view: the resetting of model parameters is now more specific (#1815). commit 568d31cf0ab56fad40bee17f8813fa3bfc2ba7ae Author: Alan Garny Date: Fri Sep 21 11:15:34 2018 +1200 Some minor cleaning up. commit 4ceb0185ef8bd9a56c9526028996b0a5cd40b8aa Author: Alan Garny Date: Fri Sep 21 10:19:10 2018 +1200 Simulation Experiment view: some work on making the resetting of model parameters more customisable (#1815). commit 0fb6c790c718f59009938473df6fd673ade627a3 Merge: 50be964b7 88cb024a2 Author: Alan Garny Date: Fri Sep 21 09:20:30 2018 +1200 LLVM+Clang: upgraded to version 7.0.0 (closes #1814). commit 88cb024a227f0bcd3a3d6e0fd8734ebf8e924da8 Author: Alan Garny Date: Fri Sep 21 09:04:10 2018 +1200 Slight update to our downloads page (#1814). commit c9a09a8e7fb1568db372539f7a6ed6e923ff6e41 Author: Alan Garny Date: Fri Sep 21 09:02:07 2018 +1200 Stop building only LLVM+Clang (#1814). commit c535e4c9d5667aaaf2006f99703e614e95e5b66e Author: Alan Garny Date: Fri Sep 21 09:01:25 2018 +1200 LLVM+Clang: Windows and Linux binaries for version 7.0.0 (#1814). commit 977e1a8bb12174d70fec3cdb15d369a7815a181b Merge: 5929aa54e 50be964b7 Author: Alan Garny Date: Thu Sep 20 18:42:42 2018 +1200 Merge branch '\''master'\'' into issue1814. commit 50be964b75e12afd6db9d68fbd2c8d977cb77980 Merge: c8ab6bf47 d37f3644d Author: Alan Garny Date: Thu Sep 20 18:40:52 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression (closes #1816). commit d37f3644deef9aa5f8a2ff9a2253fed31c87cf7a Author: Alan Garny Date: Thu Sep 20 18:23:13 2018 +1200 Slight update to our downloads page (#1816). commit 068dbbcb7cc38c2e86b76b4266ca5319f6975883 Author: Alan Garny Date: Thu Sep 20 18:20:56 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression (#1816). commit 3432f031fa7eda0adf6d7fbd5c3ba8d37d68de53 Author: Alan Garny Date: Thu Sep 20 18:02:40 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression (#1816). commit 7bb85ef097690ef566d9b7700dd4ebdfec3e7e49 Author: Alan Garny Date: Thu Sep 20 17:47:14 2018 +1200 Some minor cleaning up. commit 3c9d5826002d391043595c00ff4b8f407861a0ca Author: Alan Garny Date: Thu Sep 20 17:35:57 2018 +1200 Editor widget: don'\''t have the current word selected when updating an editor from another one and when our find/replace widget is visible. commit 7da084c63f67b753814b123b26f7a6ce28c63d33 Author: Alan Garny Date: Thu Sep 20 17:34:19 2018 +1200 Editor widget: make sure we also update our search options when updating our find/replace widget from another one. commit 5929aa54ef965cb645cc0368683f8f7aed0b5752 Author: Alan Garny Date: Thu Sep 20 16:01:33 2018 +1200 LLVM+Clang: macOS binaries for version 7.0.0 (#1814). commit f52a3a2c82af8f5143260ce16ee9dc97ba42d370 Author: Alan Garny Date: Thu Sep 20 14:18:02 2018 +1200 LLVM+Clang: upgraded to version 7.0.0 (#1814). commit 88db2419f9728ffc5211e6807acdbfde37c61118 Author: Alan Garny Date: Thu Sep 20 14:17:40 2018 +1200 Only build LLVM+Clang (#1814). commit c8ab6bf478c574a4b1be46ed8539bbad13e48d96 Merge: 075087d15 6cf0a44c1 Author: Alan Garny Date: Thu Sep 20 13:26:40 2018 +1200 General: improved HiDPI support on Windows (closes #1776). commit 6cf0a44c1c8c2791500be4f498771d356dcdf512 Author: Alan Garny Date: Thu Sep 20 12:06:10 2018 +1200 Slight updates to our downloads pages (#1776). commit 670156755d417d4cfb87cf96bb14332fc455baae Author: Alan Garny Date: Thu Sep 20 12:03:12 2018 +1200 General: improved HiDPI support on Windows (#1776). commit 3e55ede25b83033d7314669ea9d46ea48cc857d1 Merge: cdc2d30ba 075087d15 Author: Alan Garny Date: Tue Sep 18 17:21:51 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 075087d15c964033b92ff7e89b3caaf615be5562 Merge: 71c7b63ad 1b646798a Author: Alan Garny Date: Tue Sep 18 17:20:41 2018 +1200 New snapshot. commit 1b646798a7364f08f4e2b39432e9916a6d2370d9 Author: Alan Garny Date: Tue Sep 18 16:59:11 2018 +1200 New snapshot. commit cdc2d30ba1d88e53d8c011ce3038b2e23d4901d4 Merge: 5e6ff671d 71c7b63ad Author: Alan Garny Date: Tue Sep 18 15:17:28 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 71c7b63adff689f21880afa8d85d09298f6c4b5f Merge: b4323794b 988bb65f5 Author: Alan Garny Date: Tue Sep 18 15:14:41 2018 +1200 General: don'\''t force the use of 96 DPI anymore (closes #1810). commit 988bb65f58b94fc777a5d1a2a361e990ebf51e9c Author: Alan Garny Date: Tue Sep 18 14:59:02 2018 +1200 Slight update to our downloads page (#1810). commit 676e41bd437b0491bb5de498d6118241ab7643fb Author: Alan Garny Date: Tue Sep 18 14:18:30 2018 +1200 General: don'\''t force the use of 96 DPI anymore (#1810). commit 5e6ff671d04e630c666096ea10661fdc99f575bf Merge: 19ad1ad27 b4323794b Author: Alan Garny Date: Mon Sep 17 18:00:40 2018 +1200 Merge branch '\''master'\'' into issue1544. commit b4323794b7b6856d465bdd18ddbe410acaf2b037 Merge: b22eb5dad 7597f031f Author: Alan Garny Date: Mon Sep 17 17:59:49 2018 +1200 Some minor cleaning up. commit 7597f031fa91ae74e021ad4f2bf478fa597f6867 Author: Alan Garny Date: Mon Sep 17 17:02:13 2018 +1200 Some minor cleaning up. commit 19ad1ad27892f41900c1e80d8414fbea27e74097 Merge: da5891e20 b22eb5dad Author: Alan Garny Date: Mon Sep 17 11:23:28 2018 +1200 Merge branch '\''master'\'' into issue1544. commit b22eb5dada90d109c7c718ecc73500f481dec9c7 Merge: 50e78b7e3 8046df6e3 Author: Alan Garny Date: Mon Sep 17 11:22:32 2018 +1200 Graph Panel widget: improved the plotting speed of simulation data (closes #1806). commit 8046df6e3527b6414fb809e3679a432f6ccc88f2 Author: Alan Garny Date: Mon Sep 17 11:06:08 2018 +1200 Graph Panel widget: optimise logarithmic axes (#1806). commit da5891e20315e133ac9f785f5d8c821f7258a15f Merge: 3a1745b73 50e78b7e3 Author: Alan Garny Date: Fri Sep 14 19:11:32 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 50e78b7e3581d2400e97ec283fa9c134ea5a4cb2 Merge: b2e116bf5 1981a5f07 Author: Alan Garny Date: Fri Sep 14 19:09:54 2018 +1200 Graph Panel widget: improved the plotting speed of simulation data (closes #1806). commit 1981a5f07c2f1b350f94a46a007b3ee64be940b9 Author: Alan Garny Date: Fri Sep 14 18:53:45 2018 +1200 Slight update to our downloads page (#1806). commit 9cfd29defd5e2e0c7163e64b057dbda3b9bc41a1 Author: Alan Garny Date: Fri Sep 14 18:46:42 2018 +1200 Simulation Experiment view: make sure that our preferences use the "official" default values (#1806). commit dddabb70bcdc533b3a220d3516edd795fc3a5d1f Author: Alan Garny Date: Fri Sep 14 18:45:38 2018 +1200 Graph Panel widget: use 1 as our default graph line width (#1806). Indeed, a bigger width means that it will be more time consuming to draw, so we don’t want to use a big width by default… commit 5b9503531bc80aacfc36944f80b6dd5dfbf3560d Author: Alan Garny Date: Fri Sep 14 18:08:11 2018 +1200 Graph Panel widget: put back the optimisation of the axes'\'' values so that they fall onto a factor of the axes'\'' minor step (but only if we are not dealing with a logarithmic axis) (#1806). This is what was causing the graph panels to be very slow. commit 4e6576596cf5a5c012f13c9b914912d9c4bc611c Author: Alan Garny Date: Fri Sep 14 17:11:30 2018 +1200 Some minor cleaning up. commit d6243d43bcb1b29a1b5785660594b3f44b608f6f Author: Alan Garny Date: Fri Sep 14 16:50:42 2018 +1200 Graph Panel widget: don'\''t need our alignment with neighbours to be done twice in a row when OpenCOR is visible (#1806). This was done as a result of issue #1790, but this is not needed anymore as a result of issue #1794. So, not only that, but it obviously also makes things a bit faster with regards to our current issue. commit 5a5a82fcb5eae4c73104554581b3bbffca0e67fb Author: Alan Garny Date: Fri Sep 14 16:17:50 2018 +1200 Graph Panel widget: improved the alignment of graph panels (#1806). commit 1c16f8f08d749c6dc0633bc12b83068f2564b17b Author: Alan Garny Date: Fri Sep 14 15:45:19 2018 +1200 Some minor cleaning up. commit cca5f13cc3c630ab4f355af2d0247919c9bcda63 Author: Alan Garny Date: Fri Sep 14 14:52:26 2018 +1200 Some minor cleaning up. commit 3a1745b73f8852dac414a356ff1d569f3ec237eb Merge: 483a233dc b2e116bf5 Author: Alan Garny Date: Fri Sep 14 09:33:49 2018 +1200 Merge branch '\''master'\'' into issue1544. commit b2e116bf5900adc143ab6a1e8b8729b7ad922533 Merge: f9b22d364 2fc8ff31c Author: Alan Garny Date: Fri Sep 14 09:32:51 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (closes #1804). commit 2fc8ff31ca2a2004cd075161dd3e0abc3279684c Author: Alan Garny Date: Fri Sep 14 09:17:09 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit bbd1e9b79669ef6507bfcc3c7f06f59c0ea27a37 Author: Alan Garny Date: Thu Sep 13 19:13:34 2018 +1200 Some minor cleaning up. commit 69d572505df6c9588d6411039ea468fccfe538a8 Author: Alan Garny Date: Thu Sep 13 19:03:20 2018 +1200 For testing... commit aa8f8ca38fa45c6318da9dcbea9df1f9c20afb72 Author: Alan Garny Date: Thu Sep 13 18:59:45 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 998e9d6ce858727b3b473bfb900e3e2103bfeb59 Author: Alan Garny Date: Thu Sep 13 18:58:02 2018 +1200 For testing... commit 2f54375085e69544469fe689334109de61b185b4 Author: Alan Garny Date: Thu Sep 13 18:32:39 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 5d335b3ba08ed1c9a533ed3b7309c7a42c41ff29 Author: Alan Garny Date: Thu Sep 13 18:25:24 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 2ba632180a086937ac80b8b5fb7a68d806f27ad6 Author: Alan Garny Date: Thu Sep 13 18:11:36 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit d3734a2f0accd09371477d1d5588c339c16bcd24 Author: Alan Garny Date: Thu Sep 13 18:06:25 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 68e329e20f884abf1e54dfc7f29e1e172ef6e133 Author: Alan Garny Date: Thu Sep 13 18:03:56 2018 +1200 CMake: prevent long command lines on Windows. commit 4dddd346caa80725959cf47016aa28073b67e717 Author: Alan Garny Date: Thu Sep 13 17:28:40 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 89a4e79e95feb69a0e789b5be1f1101fda0529b9 Author: Alan Garny Date: Thu Sep 13 15:56:33 2018 +1200 Slight update to our downloads page (#1804). commit 30fcc994302615e032d000898218f8ecd7ffe9a6 Author: Alan Garny Date: Thu Sep 13 15:53:57 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information (#1804). commit 483a233dcdee1b90859934dfb12d645c89837e06 Merge: f6bf438ae f9b22d364 Author: Alan Garny Date: Thu Sep 13 11:09:54 2018 +1200 Merge branch '\''master'\'' into issue1544. commit f9b22d364f5712f6403610c9a0058c6f9522039d Merge: fb9da46fa c129f1918 Author: Alan Garny Date: Thu Sep 13 11:08:51 2018 +1200 General: only handle a URL when OpenCOR is visible and no modal dialog is active (closes #1802). commit c129f191834b08f741bd697b2d634058af5a8814 Author: Alan Garny Date: Thu Sep 13 10:17:05 2018 +1200 Slight update to our downloads page (#1802). commit 63c3c4fc2de88a4e521b83f32c6953faa0c7d63e Author: Alan Garny Date: Thu Sep 13 09:56:46 2018 +1200 URL scheme: only handle a URL when no modal dialog is active (#1802). commit a54f7c7c16ed0bf571668a994a254adec548fc3f Author: Alan Garny Date: Wed Sep 12 18:45:33 2018 +1200 URL scheme: only handle a URL when OpenCOR is visible (#1802). commit 7901971fe25f28e6652b5e4d45abae5fdd59fb2c Author: Alan Garny Date: Wed Sep 12 15:06:34 2018 +1200 Some minor cleaning up. No need to test that we have a window handle since we necessarily have one! commit 11660f1bec05311e38f0bba7a2ab15b2bb3fdc31 Author: Alan Garny Date: Wed Sep 12 14:47:46 2018 +1200 Some minor cleaning up. No need to test that we have a pWindow since we always do! commit 216a240f725b9d0f1ac70dea0409470e57511199 Author: Alan Garny Date: Wed Sep 12 14:35:44 2018 +1200 Some minor cleaning up. commit 0cb8c853e419eb76471bcdc0d2fd19fe91359d65 Author: Alan Garny Date: Wed Sep 12 12:39:33 2018 +1200 OpenSSL: 1.1.1 binaries for version 1.1.1 (#1801). commit 00b1daf54d73c559e4919f8442d7c44a83e87edb Author: Alan Garny Date: Wed Sep 12 12:38:49 2018 +1200 OpenSSL: make sure we can build version 1.1.1 on Windows (#1801). commit 08bc365f915fb85966e822a8d84aa180233cfa6e Author: Alan Garny Date: Wed Sep 12 11:24:37 2018 +1200 Getting ready to build libgit2 (#1801). commit 44d3cf588e19e3f67653208d250d905c0ce8f740 Author: Alan Garny Date: Wed Sep 12 10:38:43 2018 +1200 OpenSSL: 1.1.1 binaries for Linux and macOS (#1801). commit 5fb0194f0424a15ce3c4e1f60711471ff5f373cc Author: Alan Garny Date: Wed Sep 12 10:25:00 2018 +1200 OpenSSL: upgraded to version 1.1.1 (#1801). commit 83c4aaf09fb652a679ff756ff01ac1b2eb653a6c Author: Alan Garny Date: Wed Sep 12 10:23:47 2018 +1200 Only build OpenSSL (#1801). commit f6bf438ae596186a20e3fbd56ee3792d6c1d2740 Merge: 9b3aa2420 fb9da46fa Author: Alan Garny Date: Wed Sep 5 23:29:50 2018 +0200 Merge branch '\''master'\'' into issue1544. commit fb9da46fa119eda2b3f34c60cb5381a1af85d11c Merge: 04c38a258 ff2c65991 Author: Alan Garny Date: Wed Sep 5 23:28:45 2018 +0200 libgit2: upgraded to version 0.27.4 (closes #1799). commit ff2c65991bcb3327950d0203dd68e2bf0282d55b Author: Alan Garny Date: Wed Sep 5 23:07:48 2018 +0200 Slight updates to our downloads pages (#1799). commit 465c9bc01720b55542100fd96d5af2b1c902bcdf Author: Alan Garny Date: Wed Sep 5 23:07:25 2018 +0200 Don'\''t only build the libgit2 package (#1799). commit c1ecd082ac1fac031e6bfc6b0ed09ebd90878aeb Author: Alan Garny Date: Wed Sep 5 23:06:59 2018 +0200 libgit2: binaries for version 0.27.4 (#1799). commit 6b035838ad0a4d69b85f75ac3df491fd02379132 Author: Alan Garny Date: Wed Sep 5 22:56:34 2018 +0200 libgit2: upgraded to version 0.27.4 (#1799). commit 86e23c4b81deaf291ff6b8b80d6f88e7befe8c97 Author: Alan Garny Date: Wed Sep 5 22:56:04 2018 +0200 Only build the libgit2 package (#1799). commit 161fd383935404ec3c51d2fb904d4739771093d5 Author: Alan Garny Date: Wed Sep 5 18:06:51 2018 +0200 Oxygen library: upgraded to version 5.49.0. commit 9b3aa24200a2b97b3d90d2224ed22e8a17b37cc3 Merge: 896dbd855 04c38a258 Author: Alan Garny Date: Sat Sep 1 16:33:37 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 04c38a25814d7872a3e4836543c3c7a378da59e7 Merge: b1625b8d0 a161c4e96 Author: Alan Garny Date: Sat Sep 1 16:31:43 2018 +0200 Some minor cleaning up. commit a161c4e96dcd962ac0c17b67a1c805b3db28157c Author: Alan Garny Date: Sat Sep 1 16:13:31 2018 +0200 New snapshot. commit 93a236094140104ac08be3a9ce6c96407d7ee7f3 Author: Alan Garny Date: Sat Sep 1 16:03:19 2018 +0200 PMR Workspaces window: highlight local changes within a block of changes in the synchronisation dialog (#1294). commit 0116389861f89dd60c70c1211ee47edcd664ffa0 Author: Alan Garny Date: Sat Sep 1 15:38:54 2018 +0200 Some minor cleaning up. commit 1a9f1652c49251ee5884edc7c6af7b95cec485d5 Author: Alan Garny Date: Sat Sep 1 15:30:52 2018 +0200 Some minor cleaning up. commit 964257634261aaf1a6887ddd2d3c0510f0f94beb Author: Alan Garny Date: Sat Sep 1 15:11:57 2018 +0200 Some minor cleaning up. commit 896dbd8552789a0f52b5dfe143ea4e9f00e203b0 Merge: 29af71de2 b1625b8d0 Author: Alan Garny Date: Thu Aug 30 14:41:19 2018 +0200 Merge branch '\''master'\'' into issue1544. commit b1625b8d0a56ba17a79309b3405c9112cdcc6b47 Merge: 602e72762 9c23bcc7d Author: Alan Garny Date: Thu Aug 30 14:40:45 2018 +0200 New snapshot. commit 9c23bcc7d724fbe73613159a14a4bce43823f480 Author: Alan Garny Date: Thu Aug 30 14:24:23 2018 +0200 New snapshot. commit 602e7276273725d60aaaacbb0bc717bdcab32c0c Merge: 5d0eb8073 155301025 Author: Alan Garny Date: Thu Aug 30 14:21:07 2018 +0200 Simulation Experiment view: fixed an issue with reloading a SED-ML file / COMBINE archive not looking smooth on Windows and Linux (closes #1793). commit 155301025b8bea801aa5e916a5e61fdcb464d9f7 Author: Alan Garny Date: Thu Aug 30 14:02:46 2018 +0200 Slight update to our downloads page (#1793). commit 0ec9f0f54e4ffe06ed5be8656ca77e861a4a841f Author: Alan Garny Date: Thu Aug 30 13:57:44 2018 +0200 Simulation Experiment view: some work on making the reloading of a SED-ML file / COMBINE archive smoother on Windows and Linux (#1793). commit 45c2d416798659ec8c4d199ba5ea919bbc89f223 Author: Alan Garny Date: Thu Aug 30 13:17:08 2018 +0200 Simulation Experiment view: some work on making the reloading of a SED-ML file / COMBINE archive smoother on Windows and Linux (#1793). commit 5d0eb8073a5031855cfa33e55390cad3c4ca7b43 Merge: ff6bf1e2c e7e547255 Author: Alan Garny Date: Wed Aug 29 22:30:28 2018 +0200 Graph Panel widget: fixed an issue with some graph panels not getting aligned on resetting another graph panel (closes #1794). commit e7e54725527abc8ab4278df006bcf38ea99825b7 Author: Alan Garny Date: Wed Aug 29 22:12:04 2018 +0200 Slight update to our downloads page (#1794). commit 0177b2a17f5cbc4684408c3d1fb88081caa1345f Author: Alan Garny Date: Wed Aug 29 22:10:44 2018 +0200 Graph Panel widget: fixed an issue with some graph panels not getting aligned on resetting another graph panel (#1794). commit ff6bf1e2c96a7ccf64d01af77673284664034daf Merge: 27f8c3d2d 56c32cd60 Author: Alan Garny Date: Wed Aug 29 19:43:46 2018 +0200 Graph Panel widget: fixed an issue with some graph panels potentially aligning only after a short delay (closes #1790). commit 56c32cd603c642e6e92f6606719c0cfb3aefcef4 Author: Alan Garny Date: Wed Aug 29 18:48:44 2018 +0200 Slight update to our downloads page (#1790). commit d3a3bb947acf699e1b54f50410837ac9909c33b4 Author: Alan Garny Date: Wed Aug 29 18:47:12 2018 +0200 Graph Panel widget: fixed an issue with some graph panels potentially aligning only after a short delay (#1790). commit 27f8c3d2dfb46a4fc5ca0637c63e7040f51534e6 Merge: 8e191c791 659886b37 Author: Alan Garny Date: Wed Aug 29 16:48:35 2018 +0200 Some minor cleaning up. commit 659886b37f607d6e59255d29f0b418f5a3d74fe1 Author: Alan Garny Date: Wed Aug 29 12:17:35 2018 +0200 Some minor cleaning up. Indeed, QwtScaleDraw::getBorderDistHint() always returns distances that are greater or equal to zero, so no need for checking them. commit 71450eb1c9d52625f82f562ae47a93dff7c4f452 Author: Alan Garny Date: Wed Aug 29 11:38:38 2018 +0200 Some minor cleaning up. Indeed, QwtScaleDraw::getBorderDistHint() always returns distances that are greater or equal to zero, so no need for checking them. commit 26ddc6ce29b0ddb4e5bfb4c1da7f6b7ce372d6d3 Author: Alan Garny Date: Wed Aug 29 09:49:10 2018 +0200 Some minor cleaning up. commit 8e191c7913b38bac6cbfed792ae4abbf638bbe91 Merge: bf9639948 56a28c9eb Author: Alan Garny Date: Wed Aug 29 07:39:39 2018 +0200 Graph Panel widget: no need for the resize hack and issue #1786. commit 56a28c9ebe2118f960bf3ac6b91f3ac30acf6346 Author: Alan Garny Date: Tue Aug 28 18:18:22 2018 +0200 Graph Panel widget: no need for the resize hack and issue #1786. Indeed, issue #1786 arose as a result of the default handling of GraphPanelPlotWidget::event() being done through a call to QWidget::event() while it should have been done through a call to QwtPlot::event(). So, now that we have fixed that call (see commit bf96399 and issue #1783), issue #1786 is irrelevant. commit bf9639948d3f69cf98691ee4149f010f7cdf4516 Merge: cf81786f6 4c3fc4eeb Author: Alan Garny Date: Tue Aug 28 13:08:49 2018 +0200 Graph Panel widget: added support for pinch gestures (#1783). commit 4c3fc4eeb04f5f8104be28a4d8abce52271d7a38 Author: Alan Garny Date: Tue Aug 28 11:52:47 2018 +0200 Graph Panel widget: added support for pinch gestures (#1783). commit 29af71de2fc90dc85d6bebb84c627c5aace04ecb Merge: bc368dfed cf81786f6 Author: Alan Garny Date: Mon Aug 27 18:48:52 2018 +0200 Merge branch '\''master'\'' into issue1544. commit cf81786f69c85f7363b7c9796bccd364a2c2e358 Merge: ae0acbede d5891cd33 Author: Alan Garny Date: Mon Aug 27 18:47:51 2018 +0200 Simulation Experiment view: fixed an issue with the loading/reloading of a SED-ML file / COMBINE archive potentially resulting in some legends being hidden / of the wrong width (closes #1786). commit d5891cd335904ba47428904390e389784716ed00 Author: Alan Garny Date: Mon Aug 27 18:27:58 2018 +0200 Some minor cleaning up. commit 42eab3cf64c51df7177e904d3353bfe83d1d7719 Author: Alan Garny Date: Mon Aug 27 18:21:23 2018 +0200 Graph Panel widget: ensure that our legend is visible and of the right width (#1786). By temporarily disabling updates for a GraphPanelPlotWidget, we prevent some black rectangles (of the size of a GraphPanelPlotWidget?) from flashing on Linux. commit cc0848dc183f9ff5c76647fea9864cc8f4e0e91e Author: Alan Garny Date: Mon Aug 27 17:34:28 2018 +0200 Slight update to our downloads page (#1786). commit c8737d1f3b5fcef1642c05b8960bd21588144084 Author: Alan Garny Date: Mon Aug 27 17:07:32 2018 +0200 Graph Panel widget: ensure that our legend is visible and of the right width (#1786). commit 8234e99f2ecfaee1ddbe1b735afb8d81f9fd2943 Author: Alan Garny Date: Mon Aug 27 15:33:09 2018 +0200 Some minor cleaning up. commit fec995f1126f389624dae550c5a421fce66e89c9 Author: Alan Garny Date: Mon Aug 27 15:27:44 2018 +0200 Some minor cleaning up. commit edc6be5d3e99bd151c15c811bec41e745d63d412 Author: Alan Garny Date: Mon Aug 27 09:56:20 2018 +0200 Graph Panel widget: make sure we call setAxes() in our GraphPanelPlotWidget constructor (#1786). We used to do it, but then removed that call. However, that call updates our actions, so we better do it to be on the safe side. commit bc368dfeddc929feb6ed50de7e2f233eaa257534 Merge: e0b6655f4 ae0acbede Author: Alan Garny Date: Fri Aug 24 22:25:12 2018 +0200 Merge branch '\''master'\'' into issue1544. commit ae0acbede9902c3053f460790baa2dfc03d7030b Merge: d998d1822 5e468074e Author: Alan Garny Date: Fri Aug 24 22:08:14 2018 +0200 Some minor cleaning up commit 5e468074e9862c191784a175c4b7d3dbe7bb32d1 Author: Alan Garny Date: Fri Aug 24 21:53:30 2018 +0200 Some minor cleaning up. commit d2cee1b9bf1ce1574914b5754d0e32b7ccac325c Author: Alan Garny Date: Fri Aug 24 21:33:20 2018 +0200 Some minor cleaning up. commit d998d1822da64cd09cc3b2380ed32078298dfa16 Merge: bb08fafcf b4a166989 Author: Alan Garny Date: Fri Aug 24 21:31:50 2018 +0200 Graph Panel widget: added support for pinch gestures (closes #1783). commit b4a1669890f304638e73c0f0fd1e107e4f25e17b Author: Alan Garny Date: Fri Aug 24 21:18:44 2018 +0200 Slight update to our downloads page (#1783). commit 5245f617c54e4a5a1c7a1b86ab835bef9613ce5b Author: Alan Garny Date: Fri Aug 24 21:16:47 2018 +0200 Graph Panel widget: added support for pinch gestures (#1783). commit 07c7a9a4a58ab108c92e09fd6c1fae6cd2645dcb Author: Alan Garny Date: Fri Aug 24 20:58:19 2018 +0200 Some minor cleaning up. commit 3c52f54ebb4fd96a8c23bc8f35cd1f8f26ab21a1 Author: Alan Garny Date: Fri Aug 24 20:55:43 2018 +0200 Some minor cleaning up. commit 45edcc43b52840c27cf71c766cd7c63ad1d1ff36 Author: Alan Garny Date: Fri Aug 24 18:18:49 2018 +0200 Some minor cleaning up. commit bb08fafcfe8d14f0cbcc5e833a6fcc6136cdc3ac Merge: 23bae929e a89b59f2f Author: Alan Garny Date: Fri Aug 24 17:24:06 2018 +0200 Graph Panel widget: only reset axes when needed (closes #1777). commit a89b59f2f38bc868c547725ec53d6cf939d47732 Author: Alan Garny Date: Fri Aug 24 17:05:14 2018 +0200 Graph Panel widget: improved the alignment of graph panels (#1777). commit 504019ca500dfb92ee31c8e1c631136af3686077 Author: Alan Garny Date: Fri Aug 24 17:03:06 2018 +0200 Graph Panel widget: improved the alignment of graph panels (#1777). commit d8a8d205a4afa3619eac8b5264b9b46214998cf2 Author: Alan Garny Date: Fri Aug 24 16:51:56 2018 +0200 Some minor cleaning up. commit 9599e9467549a3a9757f26eb0c8e1f1ed93759b4 Author: Alan Garny Date: Fri Aug 24 16:17:35 2018 +0200 Graph Panel widget: properly set axes in GraphPanelPlotWidget::resetAxes() (#1777). commit 60c0ff7de0b88c021a6c8f2ec94f9c5e1f0f4f16 Author: Alan Garny Date: Fri Aug 24 16:12:43 2018 +0200 Graph Panel widget: properly set axes for axes synchronisation (#1777). commit 95d73ec24174d1bdfc7a8d444b97eaed5e4d444c Author: Alan Garny Date: Fri Aug 24 15:56:37 2018 +0200 Graph Panel widget: improved our GraphPanelPlotWidget::realDataRect() method (#1777). It now takes into account the default axes values, which is quite important if we want to show the user that we have changed the start/end time of a simulation when the VOI is used on one of the axes of a graph. commit 8ca13013fcd76d6d5576f4fd8d0fa3d4ec5e8862 Author: Alan Garny Date: Fri Aug 24 15:54:50 2018 +0200 Some minor cleaning up. commit c30a586df95b2a23a3fcd4194fad4414ba9888ff Author: Alan Garny Date: Fri Aug 24 15:09:15 2018 +0200 Graph Panel widget: removed the pForceAxesSetting parameter from SimulationExperimentViewSimulationWidget::updatePlot() (#1777). Indeed, it wasn’t being used at all. commit 6e9d87d079f6147ddbf0172bba0ee2a9ebe14e64 Author: Alan Garny Date: Fri Aug 24 14:49:38 2018 +0200 Graph Panel widget: properly set axes for axes synchronisation (#1777). commit c7e491e9b0dbc296124572b283d4e404eadb87ae Author: Alan Garny Date: Fri Aug 24 14:27:14 2018 +0200 Graph Panel widget: properly set axes in GraphPanelPlotWidget::customAxes() (#1777). commit 5d92f9b8748bf6baa4b4d0fdf4a4d216dba508e1 Author: Alan Garny Date: Fri Aug 24 14:18:51 2018 +0200 Graph Panel widget: properly set axes for zooming a region in GraphPanelPlotWidget::mouseMoveEvent() (#1777). commit 588e3b689e09c65402840be07533b44d9cfbcef1 Author: Alan Garny Date: Fri Aug 24 14:13:14 2018 +0200 Graph Panel widget: properly set axes for panning in GraphPanelPlotWidget::mouseMoveEvent() (#1777). commit 739d1d781fc315bc92d8179184efbf612bfe1a7b Author: Alan Garny Date: Fri Aug 24 14:11:13 2018 +0200 Graph Panel widget: properly set axes in GraphPanelPlotWidget::scaleAxes() (#1777). commit 88854560deff149dfddeef0aeda5b14bb7392dd6 Author: Alan Garny Date: Fri Aug 24 14:04:23 2018 +0200 Graph Panel widget: properly set axes in GraphPanelPlotWidget::resetAxes() (#1777). commit 5bbcbb03c74e973bdba11374a32d27da0eb8c754 Author: Alan Garny Date: Fri Aug 24 13:58:05 2018 +0200 Graph Panel widget: no need to set our axes in our GraphPanelPlotWidget constructor (#1777). Indeed, our axes are already fine and calling setAxes() doesn’t make any difference. commit c5e347a168b220a1aae4b0ec2ba10ffa12fde121 Author: Alan Garny Date: Fri Aug 24 13:47:17 2018 +0200 Graph Panel widget: distinguish the forcing of axes setting and the synchronisation of X/Y axes. We merely added pSynchronizeXAxis and pSynchronizeYAxis to GraphPanelPlotWidget::setAxes(). Right now, we use false for pForceAxesSetting, pSynchronizeXAxis and pSynchronizeYAxis in our direct calls to GraphPanelPlotWidget::setAxes(). In other words, nothing works, we just have the parameters we will need for GraphPanelPlotWidget::setAxes(). commit ea81925ee0d8d3fdc54ed971adf7374ea3db9c7c Author: Alan Garny Date: Fri Aug 24 13:35:42 2018 +0200 Graph Panel widget: distinguish the forcing of axes setting and the synchronisation of X/Y axes. We merely added pSynchronizeXAxis and pSynchronizeYAxis to GraphPanelPlotWidget::setAxes(). Right now, we use false for pForceAxesSetting, pSynchronizeXAxis and pSynchronizeYAxis in our direct calls to GraphPanelPlotWidget::setAxes(). In other words, nothing works, we just have the parameters we will need for GraphPanelPlotWidget::setAxes(). commit e0b6655f4c47c3211c1541c273be40e1778e86d7 Merge: 29aaf3382 23bae929e Author: Alan Garny Date: Thu Aug 23 19:11:57 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 23bae929ed93dbbadaab6f7656044eb6ce71da12 Merge: e58a330fb 6d505a0db Author: Alan Garny Date: Thu Aug 23 19:10:48 2018 +0200 Graph Panel widget: only reset axes when needed (closes #1777). commit 6d505a0db34425a92c200d6468387c7c1d4db958 Merge: cc76425ca e58a330fb Author: Alan Garny Date: Thu Aug 23 18:56:34 2018 +0200 Merge branch '\''master'\'' into issue1777. commit e58a330fb1d6db2f029be9ad515e9d83394a9241 Merge: e8234f405 7043e7673 Author: Alan Garny Date: Thu Aug 23 18:55:46 2018 +0200 Some minor cleaning up. commit cc76425cac29166f5148fa647f2067d47164a9b1 Author: Alan Garny Date: Thu Aug 23 18:44:16 2018 +0200 Slight update to our downloads page (#1777). commit c6c491d533f62f4ba34c4f1cc474833d7d06d6dc Author: Alan Garny Date: Thu Aug 23 18:40:01 2018 +0200 Graph Panel widget: only reset axes when needed (#1777). commit 7043e76735e52c77c396bcb16d770ba8955ebf4f Author: Alan Garny Date: Thu Aug 23 17:23:59 2018 +0200 Graph Panel widget: make sure that our axes don'\''t auto-scale. commit f47f0b640befdf87bceff5d14bc608ca436edd20 Author: Alan Garny Date: Thu Aug 23 16:32:16 2018 +0200 Some minor cleaning up. commit 3d4927a6b4bd78a703f394d801a1d74fe2e402db Author: Alan Garny Date: Thu Aug 23 16:27:32 2018 +0200 Some minor cleaning up. commit 8a0f16ddacfb6ade1eb1e70ec95e7dc3c10ba3d4 Author: Alan Garny Date: Thu Aug 23 14:52:57 2018 +0200 Partially revert commit 9e64a28. Indeed, we still want to call updateFileReopenMenu() here and there in case the user wants to reopen a recent file using the key shortcut rather than the menu. commit 29aaf33829c7219ab6fca412c6013cefa0d07c2e Merge: d6023738e e8234f405 Author: Alan Garny Date: Thu Aug 23 11:48:25 2018 +0200 Merge branch '\''master'\'' into issue1544. commit e8234f40509022f3471ff8487b3857a03d8451be Merge: 224b0a331 07bdf14a8 Author: Alan Garny Date: Thu Aug 23 11:44:40 2018 +0200 Removed all traces of the Analysis mode. commit 07bdf14a805b0cb5731c40a5fe04f5bfb9d655f5 Author: Alan Garny Date: Thu Aug 23 11:25:31 2018 +0200 Remove all traces of the Analysis mode. Since we have never used it… commit d6023738e2123d2e5e782aa6e678c4331a6c0d63 Merge: a3569a6d9 224b0a331 Author: Alan Garny Date: Wed Aug 22 23:43:05 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 224b0a331a099e2466f8c732dab869ce8a4dc14d Merge: 8f1c4ea99 83e902e4a Author: Alan Garny Date: Wed Aug 22 23:41:45 2018 +0200 Added support for HiDPI pixmaps. commit 83e902e4a5435ca901141d7cbbe65e8702d46079 Author: Alan Garny Date: Wed Aug 22 22:52:24 2018 +0200 Add support for HiDPI pixmaps. I don’t believe we currently use QIcon::pixmap(), but it doesn’t harm adding support for HiDPI pixmaps. commit 8f1c4ea9920779c95f0a122246289090b2d736ce Merge: f5f9dc442 b34644d7c Author: Alan Garny Date: Wed Aug 22 22:13:24 2018 +0200 Some cleaning up. commit b34644d7c232e726145064fae30a8cc5810e0a6e Author: Alan Garny Date: Wed Aug 22 21:54:18 2018 +0200 Zinc widget/window: improved HiDPI support. commit 1f4ea23d30a20b3daaf55435e65a91e742210368 Author: Alan Garny Date: Wed Aug 22 21:44:57 2018 +0200 Splash screen: make sure that our logo is centrally aligned. commit 35834e750c9748fee8f1a4ce2f181ba7aaaa5c81 Author: Alan Garny Date: Wed Aug 22 21:43:44 2018 +0200 Windows: don'\''t have the OpenCOR description as the name of the application in Task Manager. commit 92281aa027cf5c061d92644a38c7bb06327ef437 Author: Alan Garny Date: Wed Aug 22 21:42:44 2018 +0200 Some minor cleaning up. commit 53fc9009c7b731ca159e8d11353fbee7cae8e660 Author: Alan Garny Date: Wed Aug 22 12:19:10 2018 +0200 Some minor cleaning up. commit f5f9dc442da99dc651acf02862925bd20622126e Merge: d671f1a5d 0c99657f1 Author: Alan Garny Date: Wed Aug 22 09:44:40 2018 +0200 Simulation Experiment view: added some basic preferences for graph panels and graphs (closes #1772). commit 0c99657f1c809ed85e76e784574b6e77dea67124 Author: Alan Garny Date: Wed Aug 22 09:25:54 2018 +0200 Slight update to our downloads page (#1772). commit ca3c476b17083e339b8596e2ba9c0ec156d25935 Author: Alan Garny Date: Wed Aug 22 09:17:41 2018 +0200 Some minor cleaning up. commit c25a4146efa363df2ad183e7b610008fbeeea8bb Author: Alan Garny Date: Wed Aug 22 08:59:13 2018 +0200 Simulation Experiment view: added the legend of a graph panel as a preference (#1772). commit 4d6e2bd97132e3df99ab20dfa4129a094437afb4 Author: Alan Garny Date: Wed Aug 22 08:44:02 2018 +0200 Simulation Experiment view: added the fill colour of a graph'\''s symbol as a preference (#1772). commit 6d33d821c3a506ea0e95963876b1bf34383388fd Author: Alan Garny Date: Wed Aug 22 08:37:11 2018 +0200 Simulation Experiment view: added the fill colour of a graph'\''s symbol as a preference (#1772). commit 74b0bc103751153ae861030b877077f30751f417 Author: Alan Garny Date: Tue Aug 21 17:49:12 2018 +0200 Simulation Experiment view: make use of our preferences for a graph (#1772). commit 3a0ec0ff135d7bb7522d0153cb92c38713931360 Author: Alan Garny Date: Tue Aug 21 17:27:15 2018 +0200 Some minor cleaning up. commit f85c3628a354411046a942f635301a65f9484326 Author: Alan Garny Date: Tue Aug 21 17:19:15 2018 +0200 Some minor cleaning up. commit 3ba230b98ea1a9ab071281e831a22a4895856b07 Author: Alan Garny Date: Tue Aug 21 17:06:53 2018 +0200 Moved our formatted line/symbol style strings to our SED-ML support plugin (#1772). commit 2dc3dc681ec5caa38f9ce341b057e195026578f9 Author: Alan Garny Date: Tue Aug 21 15:30:31 2018 +0200 Simulation Experiment view: can'\''t specify the default title of a graph panel / graph anymore (#1772). Indeed, a graph panel / graph is bound to be unique, so to have a default title for it doesn’t make sense. commit 4485a88649499663312e59aeee9eb9536d623bee Author: Alan Garny Date: Tue Aug 21 15:23:05 2018 +0200 Some minor cleaning up. commit 3544c2b736a2ff744c47c8e4633d0b3b795f1dae Author: Alan Garny Date: Tue Aug 21 15:00:20 2018 +0200 Some minor cleaning up. commit 9576661a228479f59aa16b98be6a1a21994c8632 Author: Alan Garny Date: Tue Aug 21 14:33:38 2018 +0200 Simulation Experiment view: keep track of which category is selected in our preferences dialog (#1772). commit db690e3661a29d2ae385c69d1bc8d5a81ba1a073 Author: Alan Garny Date: Tue Aug 21 14:32:59 2018 +0200 Simulation Experiment view: our preferences now support more graph-related default values (#1772). commit 3fb472120a125e36855559eebd695af669bf397c Author: Alan Garny Date: Tue Aug 21 14:15:29 2018 +0200 SED-ML support: added some convenience methods. commit 42f2918557bd1fa3f8d6110411005596cea1ed4f Author: Alan Garny Date: Tue Aug 21 14:14:40 2018 +0200 Some minor cleaning up. commit 2e60bec2a9abbc51780e91155f39c362c8b53f86 Author: Alan Garny Date: Tue Aug 21 13:23:29 2018 +0200 Some minor cleaning up. commit afcc3a69d99108923002d1977ac864931bdaf348 Author: Alan Garny Date: Tue Aug 21 13:02:33 2018 +0200 Some minor cleaning up. commit e29899717ff1aceda20167d13ac58cc6161fead9 Author: Alan Garny Date: Tue Aug 21 12:59:24 2018 +0200 Some minor cleaning up. commit bc74ae2f5401cd51e61ad0e40aad6302f3fe1ef8 Author: Alan Garny Date: Tue Aug 21 11:19:32 2018 +0200 SED-ML support: still need our original lineStyleValue() and symbolStyleValue() methods. Indeed, this is needed when retrieving the line/symbol style from a SED-ML file. Actually, not so much for the line style, but definitely a symbol style since a symbol style of “none” has an integer value of -1 (see QwtSymbol::Style). commit 5ad243da67af31299986ed4757c2ebcc8e9b7707 Author: Alan Garny Date: Tue Aug 21 10:38:49 2018 +0200 Some minor cleaning up. commit 35d11f17a3aaaa07beacf1c559ea82bf0c9d1d41 Author: Alan Garny Date: Tue Aug 21 10:38:20 2018 +0200 SED-ML support: changed the signature of our symbolStyleValue() method. Indeed, we had various calls to symbolStyleValue() that had to handle the case where we passed a value that is not recognised (e.g. QwtSymbol::UTriangle), meaning duplication of code here and there. commit 9217d370f602f62f93f7b1f44a364375bac7f296 Author: Alan Garny Date: Tue Aug 21 10:29:32 2018 +0200 Some minor cleaning up. commit 2197dfde39ca975df64086e07eb2bf1e78cb296e Author: Alan Garny Date: Tue Aug 21 10:06:48 2018 +0200 SED-ML support: changed the signature of our lineStyleValue() method. Indeed, we had various calls to lineStyleValue() that had to handle the case where we passed a value that is greater than Qt::DashDotDotLine, meaning duplication of code here and there. commit 6ac6c1d47326a4bca18446396ae5d9319ed38025 Author: Alan Garny Date: Tue Aug 21 09:12:07 2018 +0200 Some minor cleaning up. commit 65f2483f0734b47de57596d020fcbb810a7aadef Author: Alan Garny Date: Tue Aug 21 09:06:41 2018 +0200 Some minor cleaning up. commit 236be322887fe54978608e44cc731dc590cee5e9 Author: Alan Garny Date: Tue Aug 21 08:53:56 2018 +0200 Some minor cleaning up. commit c7415a7261b6fb77c7a16d850b7ed9aef5f29c06 Author: Alan Garny Date: Tue Aug 21 08:50:37 2018 +0200 Some minor cleaning up. commit 67e1e95c5e6a3c8bbe8153deb6286aff6737d9e2 Author: Alan Garny Date: Tue Aug 21 07:58:54 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit ac895c0bffefbf68117a63309686aba7e6854c25 Author: Alan Garny Date: Mon Aug 20 23:10:31 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 3cdf7cc28b160a490f6b0ffb8dad33a25e045600 Author: Alan Garny Date: Mon Aug 20 22:28:38 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 55b5e9edc9287506a158f21aa48b7c841323a841 Author: Alan Garny Date: Mon Aug 20 22:26:50 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 36ad0dc379407a78fc7df8d87da89311bb65f689 Author: Alan Garny Date: Mon Aug 20 22:25:10 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 98dc40d6935f5e99e9ffd5aec5c165aeb510266c Author: Alan Garny Date: Mon Aug 20 22:18:37 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit c740d3567efdef24f28244dbfc89eb1471e1ece4 Author: Alan Garny Date: Mon Aug 20 18:15:17 2018 +0200 Some minor cleaning up. commit 9e221118f01e64fb0e145d929af61b60064fcbb2 Author: Alan Garny Date: Mon Aug 20 17:52:24 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 91d1ef425a32afb86cddf7463a18a5d2181a7d0f Author: Alan Garny Date: Mon Aug 20 17:32:13 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit c3ff92870a3f07613dadda655dc5d2782ee413f0 Author: Alan Garny Date: Mon Aug 20 16:44:06 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit a5e20f14e18e624cbfbff2fcf15ec0f408bfe525 Author: Alan Garny Date: Mon Aug 20 16:12:36 2018 +0200 Some minor cleaning up. commit 85a1ca79587836a284fb55dd906fe586944696e7 Author: Alan Garny Date: Mon Aug 20 15:33:29 2018 +0200 Some minor cleaning up. commit 5c5731debcb10142fb90b45baab7d52e76104c04 Author: Alan Garny Date: Mon Aug 20 15:00:48 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit b39798bc3715b6dc3ea3b74fe2d15a737c575278 Author: Alan Garny Date: Mon Aug 20 14:32:15 2018 +0200 Some minor cleaning up. commit 094cd66928323e703482fbc91c5256810660c66c Author: Alan Garny Date: Mon Aug 20 14:29:53 2018 +0200 Some minor cleaning up. commit b72ca626f7debc75d30423e99e0a72469a034a17 Author: Alan Garny Date: Mon Aug 20 12:27:14 2018 +0200 Property editor: only handle the escape key if needed. commit f4dfc5326853c4a8ab7c200092d9235e13213f03 Author: Alan Garny Date: Mon Aug 20 11:57:35 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 48d48e4832bbba9242f9b7297335ca0d3008ccb8 Author: Alan Garny Date: Mon Aug 20 11:38:14 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit 0bac7220f5834bb644773e39e2b04e25f4dff3a3 Author: Alan Garny Date: Mon Aug 20 10:12:59 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences (#1772). commit c8633b60ac77a0263ac2685c14ba4282a9da3050 Author: Alan Garny Date: Mon Aug 20 09:48:09 2018 +0200 Some minor cleaning up. commit 023df52ebb69ad8d0dc515c6ef470527c676556a Author: Alan Garny Date: Mon Aug 20 09:33:35 2018 +0200 Some minor cleaning up. commit 940df638f7e83a40a77dae7433b676a9dac20e9e Author: Alan Garny Date: Mon Aug 20 09:22:04 2018 +0200 Some minor cleaning up. commit a3569a6d92268e8b7a46bad356bc4cd1bbefb92c Merge: 66e351ae2 d671f1a5d Author: Alan Garny Date: Fri Aug 17 18:58:34 2018 +0200 Merge branch '\''master'\'' into issue1544. commit d671f1a5da0c093bf177138a65d3a52c3be1e669 Merge: dba4ef228 540cb7986 Author: Alan Garny Date: Fri Aug 17 18:39:43 2018 +0200 OpenSSL: upgraded to version 1.0.2p (closes #1767). commit 540cb798695634a78c8489b4f3b8cbe00dfb1f85 Author: Alan Garny Date: Fri Aug 17 18:24:58 2018 +0200 libgit2 package: new Windows builds (#1767). commit c0248c5af80d12badb13219795d61f0915cff6ac Author: Alan Garny Date: Fri Aug 17 18:19:53 2018 +0200 Don'\''t only build our libgit2 package (#1767). commit 4f2ef8c079eaedf7f48afd0e57fb4a308884ef9f Author: Alan Garny Date: Fri Aug 17 18:19:01 2018 +0200 libgit2 package: new Linux and macOS builds (#1767). commit f9c023211b3fc8130745d9d316ad0085cfc734b5 Author: Alan Garny Date: Fri Aug 17 18:11:42 2018 +0200 Only build our libgit2 packages (#1767). commit 40ebfb6688d75a80cfeb2b2e17eda86de1e643ce Author: Alan Garny Date: Fri Aug 17 18:10:54 2018 +0200 OpenSSL package: new Windows builds (#1767). commit 2d91dfd981995cc8b70b3c6db3f660a6cfff7672 Author: Alan Garny Date: Fri Aug 17 18:02:28 2018 +0200 OpenSSL package: new Linux and macOS builds (#1767). commit fb5960897b8bb17035385bc33b8a0de43b30b982 Author: Alan Garny Date: Fri Aug 17 17:46:15 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit d46e79421074e345f441c412c8809680dad7c155 Author: Alan Garny Date: Fri Aug 17 17:41:17 2018 +0200 Slight update to our downloads page (#1767). commit 968d16b1da1dd50b05af73dba27406568431afd8 Author: Alan Garny Date: Fri Aug 17 17:39:18 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit 3eca53b16aef0c0b1262f08319d6afb09bae6eb0 Author: Alan Garny Date: Fri Aug 17 17:26:27 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit e3ce74ba71597054341ea1c92733e358865d2596 Author: Alan Garny Date: Fri Aug 17 17:08:24 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit b64a32bf61baf469abd44f814284f53dd98e3df2 Author: Alan Garny Date: Fri Aug 17 16:44:57 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit 914de00713b39df0d18f00f95c120bcacfdc928e Author: Alan Garny Date: Fri Aug 17 16:29:59 2018 +0200 OpenSSL: upgraded to version 1.0.2p (#1767). commit bb6bf7b823cc0a0e0c6ddc3012176f2e35e515f1 Author: Alan Garny Date: Fri Aug 17 16:19:58 2018 +0200 Only build our libgit2 and OpenSSL packages (#1767). commit a69d863fea76518732cfe6a89e2ad4b942ded31f Merge: 42da2cc27 dba4ef228 Author: Alan Garny Date: Fri Aug 17 10:10:31 2018 +0200 Merge branch '\''master'\'' into issue1767. commit dba4ef228ff067f9f6f2d91bb918d611db4e663b Merge: 3ff613d56 8085d158f Author: Alan Garny Date: Fri Aug 17 10:08:21 2018 +0200 Cleaning up. commit 8085d158f1f0c9f633ece8c62036811ecc6ba292 Author: Alan Garny Date: Fri Aug 17 09:49:31 2018 +0200 Some minor cleaning up. commit 42da2cc276b6778d10504a39986fc3c0aa393161 Author: Alan Garny Date: Fri Aug 17 09:12:30 2018 +0200 Some minor cleaning up. commit 6c883512da7b72d37090cd31ff6c9b654cb234de Author: Alan Garny Date: Fri Aug 17 09:12:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 359ae5f06408bd4e09935de9fee61f03cd3c552b Author: Alan Garny Date: Thu Aug 16 16:09:03 2018 +0200 Some minor cleaning up. commit 338b951b3d9c1a31f9379ab4f8253ab9e8b27b5d Author: Alan Garny Date: Thu Aug 16 16:02:11 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 894113a980e933bc46fc7b6c3a53d3dc827c9540 Author: Alan Garny Date: Thu Aug 16 15:47:16 2018 +0200 Some minor cleaning up. commit bf1ec635e106458d5048e4542e2d5732235504df Author: Alan Garny Date: Thu Aug 16 09:39:10 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 0d14b943bc768e327f3351852f85e6ee4babee86 Author: Alan Garny Date: Wed Aug 15 22:38:43 2018 +0200 Don'\''t only build our libgit2 and OpenSSL packages (#1767). commit 1876f062bae73442b594e18c78c624d43a38c8fd Author: Alan Garny Date: Wed Aug 15 22:17:01 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 4ad7315a0dcc77a28f42afedd6c96ecc0600a07c Author: Alan Garny Date: Wed Aug 15 22:13:42 2018 +0200 libgit2: new Windows binaries (#1767). commit d779916942f760d64b5101b0c4fa46ac80c7be80 Author: Alan Garny Date: Wed Aug 15 22:12:46 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 8457167ef468938b0010d0e590e02e169711e4ef Author: Alan Garny Date: Wed Aug 15 21:16:15 2018 +0200 OpenSSL: new Windows binaries (#1767). commit 18d8ddaca04b5d2cadc522f4482b0b8ca2dbc647 Author: Alan Garny Date: Wed Aug 15 21:07:43 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit cefda7b70603eb86c15c5409879435037a61f702 Author: Alan Garny Date: Wed Aug 15 17:45:17 2018 +0200 OpenSSL: new Windows binaries (#1767). commit cf8506bbcd28c890454eb054e0bd2edd5f05695c Author: Alan Garny Date: Wed Aug 15 17:39:03 2018 +0200 libgit2: new Linux and macOS binaries (#1767). commit 77821a71a05a381d0a9ee08dc78c6c7fa273e1ba Author: Alan Garny Date: Wed Aug 15 17:23:32 2018 +0200 OpenSSL: new Linux and macOS binaries (#1767). commit 13155a7909cf188c7add897959047902222752d7 Author: Alan Garny Date: Wed Aug 15 16:50:22 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). For some reasons, we can’t configure with `no-tests` and, in fact, tests seem to be disabled by default. commit 33dfc053ff94ee9cd9c51a633c0c183ed3cb2233 Author: Alan Garny Date: Wed Aug 15 16:27:03 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 8474dba3f253d5d317f486303a8bb58bee8da2df Author: Alan Garny Date: Wed Aug 15 16:01:50 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 79e20ced6a507bc7ad68cb803690529b421c9d32 Author: Alan Garny Date: Wed Aug 15 15:53:08 2018 +0200 Only build our libgit2 and OpenSSL packages (#1767). commit a66003d506bc2d15597e3bd4b10cbf6b597c814c Author: Alan Garny Date: Wed Aug 15 10:30:20 2018 +0200 Revert "New snapshot." This reverts commit 14c1289e121576d26025f85e591b0fa67719a8ed. commit 14c1289e121576d26025f85e591b0fa67719a8ed Author: Alan Garny Date: Wed Aug 15 00:01:38 2018 +0200 New snapshot. commit 66e351ae2316e9f8a391f1964163a11c44b262e0 Merge: 039994936 3ff613d56 Author: Alan Garny Date: Tue Aug 14 23:23:04 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 3ff613d5631a473416960ccf94f66dfbe8053ce4 Merge: 3e6a65bec ea256f913 Author: Alan Garny Date: Tue Aug 14 23:20:35 2018 +0200 OpenSSL: upgraded to version 1.1.0i (closes #1767). commit ea256f913afaac6488ac7aeb17c99c066c04e92c Author: Alan Garny Date: Tue Aug 14 23:01:54 2018 +0200 Slight update to our downloads page (#1767). commit 35730c9eb386044cfce29dd81a7eec69882597ab Author: Alan Garny Date: Tue Aug 14 23:00:29 2018 +0200 Stop only building our OpenSSL and libgit2 packages (#1767). commit bc27f4512a554f75f65281b9835835c2e2323a4c Author: Alan Garny Date: Tue Aug 14 22:59:14 2018 +0200 libgit2 and OpenSSL packages: new binaries (#1767). commit dfcd4634ffdda2340d21d13bf513d137789e50ec Author: Alan Garny Date: Tue Aug 14 22:26:34 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 1fcb875406e4105b323a34d2e2bab29ebd7c1a59 Author: Alan Garny Date: Tue Aug 14 20:58:23 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit b39deae7b7e0cc5f858b464ce8e3331b3bbb3b33 Author: Alan Garny Date: Tue Aug 14 20:27:54 2018 +0200 Only build our OpenSSL and libgit2 packages (#1767). commit 35cb1ff2e53deea09932311d88fec0ebb76733b6 Author: Alan Garny Date: Tue Aug 14 20:26:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 022749bbfcb3c6a166e41bc09cac7485e38df318 Author: Alan Garny Date: Tue Aug 14 18:47:22 2018 +0200 Only build our OpenSSL and libgit2 packages (#1767). commit 44ba88548cd46194bfd861b57da0292f354f240a Author: Alan Garny Date: Tue Aug 14 18:21:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 0708697a47620400d71e2e0a9ccd0637e1a75808 Author: Alan Garny Date: Tue Aug 14 16:34:16 2018 +0200 OpenSSL: upgraded to version 1.1.0i (#1767). commit 06b65df72f90968b588bfecfb74ffd96fbbeea1f Author: Alan Garny Date: Tue Aug 14 16:33:37 2018 +0200 Only build our OpenSSL package (#1767). commit 0399949367f9edc2a50dd4ad87d257ff61d5f9ed Merge: 03bb808be 3e6a65bec Author: Alan Garny Date: Tue Aug 14 11:49:45 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 3e6a65bec8271e7b4d9721026ea10676fc7e855a Merge: 8d2c2c32c 77de90c04 Author: Alan Garny Date: Tue Aug 14 11:46:21 2018 +0200 Slight updates to our main README.rst file. commit 77de90c04a67ce576d855f24dcb3833c662cd09c Author: Alan Garny Date: Tue Aug 14 11:25:31 2018 +0200 Slight updates to our main README.rst file. commit 03bb808be2272efa9b8daef02f7f9e7ac513a640 Merge: c2e88ceaa 8d2c2c32c Author: Alan Garny Date: Tue Aug 14 10:47:02 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 8d2c2c32cb132544729fb3ba8f376b098fc63203 Merge: ee68433c0 13a4317c1 Author: Alan Garny Date: Tue Aug 14 10:45:03 2018 +0200 General: improved HiDPI support (closes #1763). commit 13a4317c165076ae50883a7f4972847cb649c638 Merge: dc3ce0b30 ee68433c0 Author: Alan Garny Date: Tue Aug 14 10:22:27 2018 +0200 Merge branch '\''master'\'' into hidpi. commit ee68433c00901cff693ebddf092523104eb044b1 Merge: 4c1f5c0d9 00e8321c4 Author: Alan Garny Date: Tue Aug 14 10:21:45 2018 +0200 Some minor cleaning up. commit dc3ce0b30248cd485b4b6ea0462548b5be9e75d3 Merge: be155655c 00e8321c4 Author: Alan Garny Date: Tue Aug 14 10:13:18 2018 +0200 Merge branch '\''cleaning-up'\'' into hidpi. commit be155655cb2c8f391f6cd523891e13efe9480833 Author: Alan Garny Date: Tue Aug 14 10:12:19 2018 +0200 Slight update to our downloads page (#1763). commit 00e8321c45b40b7a309f34ad8b51d7c50e9af0e9 Author: Alan Garny Date: Tue Aug 14 10:04:33 2018 +0200 Some minor cleaning up. commit 6bca7d98ca1184fcf75176ffef045e424b7a8eeb Author: Alan Garny Date: Tue Aug 14 09:50:33 2018 +0200 General: improve HiDPI support by forcing the use of 96 DPI (!!) (#1763). commit 2f1d0dfe3fc5785f2b879c4e7c6b1ca5a62e62ef Author: Alan Garny Date: Tue Aug 14 09:40:59 2018 +0200 General: improve HiDPI support by fixing the size of our icons (#1763). commit 8a63dcb83fe1d7df742dc07ae0b408df30430d42 Author: Alan Garny Date: Tue Aug 14 09:39:58 2018 +0200 Some minor cleaning up. commit 10deb980b02cb74d395837a023822356b919d911 Author: Alan Garny Date: Tue Aug 14 08:53:48 2018 +0200 Some minor cleaning up. commit 0b9ce544d8f770676cefb32e16e510c3bbc022e5 Author: Alan Garny Date: Tue Aug 14 08:51:29 2018 +0200 Some minor cleaning up. commit c2e88ceaa8aaddc68f6b28f08e601a84176beb59 Merge: 6e19bce55 4c1f5c0d9 Author: Alan Garny Date: Tue Aug 14 07:52:50 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 4c1f5c0d926f258a382b7fa7d3d5a72cef60cb6b Merge: 9e64a28aa d26cc900f Author: Alan Garny Date: Tue Aug 14 07:50:36 2018 +0200 General: allow the use of another Qt style (closes #1761). commit d26cc900fc8a6158fd46d7808799291efe60ae82 Author: Alan Garny Date: Mon Aug 13 22:03:30 2018 +0200 General: allow the use of another Qt style (#1761). It looks like for Windows 7 and Windows 10, the Qt style is actually “WindowsVista” rather than “Windows”. commit d46cb053ffe4fb23625424177002ae285da8bcde Author: Alan Garny Date: Mon Aug 13 19:02:27 2018 +0200 Slight update to our downloads page (#1761). commit 4711bd9823c25e4ad36d294637f48a025a56694c Author: Alan Garny Date: Mon Aug 13 18:54:57 2018 +0200 General: allow the use of another Qt style (#1761). commit 1663e5b6d67c207e5d7e780695a014214acc62d3 Author: Alan Garny Date: Mon Aug 13 18:44:27 2018 +0200 General: allow the use of another Qt style (#1761). commit ce0223ccad89c8538f3138f1775c8dc245e676d4 Author: Alan Garny Date: Mon Aug 13 18:27:30 2018 +0200 PMR support: make sure that preferences get properly reset/saved. commit 6e19bce5521cc2ef47c35c33c61fc8c7bf2b81ce Merge: be3a0740d 9e64a28aa Author: Alan Garny Date: Mon Aug 13 14:59:39 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 9e64a28aaa4461d60d7508ca58224803d82891f4 Merge: f52ee5ff3 29ad6fdaf Author: Alan Garny Date: Mon Aug 13 14:58:38 2018 +0200 Core plugin: fixed a problem with menu items in the File | Reopen menu potentially appearing as disabled (closes #1633). commit 29ad6fdafc738a3b612be98a0acd111345650185 Author: Alan Garny Date: Mon Aug 13 14:36:46 2018 +0200 Slight updates to our downloads page. commit a16c99d9743298b9e6a1ca377b5d8cac5d1d245d Author: Alan Garny Date: Mon Aug 13 14:30:09 2018 +0200 Slight updates to our downloads page (#1633). commit b54722c4c9703bd75121fed4d432abd4931043e3 Author: Alan Garny Date: Mon Aug 13 14:28:37 2018 +0200 Core plugin: fixed a problem with menu items in the File | Reopen menu potentially appearing as disabled (#1633). commit f52ee5ff3f4c2eb6ea8ea40c5e8b25213cc56538 Merge: fef29da53 3ec93a154 Author: Alan Garny Date: Mon Aug 13 14:19:41 2018 +0200 Cleaning up. commit 3ec93a154b64db971e15373982cf7a6abf1bdc1a Author: Alan Garny Date: Mon Aug 13 13:48:55 2018 +0200 Some minor cleaning up. commit e841588191f564258b4da6d5139c42c6e03a7210 Author: Alan Garny Date: Mon Aug 13 13:43:58 2018 +0200 Some minor cleaning up. commit afabf8de4ed4427fbf2c6327d5864be57df5ffe7 Author: Alan Garny Date: Mon Aug 13 13:29:27 2018 +0200 Some minor cleaning up. commit d5fa1af9e957136824c0ae355ecbe10c6d5a8bf7 Author: Alan Garny Date: Mon Aug 13 13:28:29 2018 +0200 Some minor cleaning up. commit 403f7c922cf1b35d6fb2a87744f6f5f6d28ba738 Author: Alan Garny Date: Mon Aug 13 11:26:58 2018 +0200 Some minor cleaning up. commit d49272839219f612ca6f87d31e331cb915e3188d Author: Alan Garny Date: Mon Aug 13 11:01:00 2018 +0200 Some minor cleaning up. commit 51d24b484e52b66d84bf23e4ac5287c4f09aaaa7 Author: Alan Garny Date: Mon Aug 13 10:47:39 2018 +0200 Some minor cleaning up. commit 5694db86ce3e4ffc6a18f0aca309ed6edc022912 Author: Alan Garny Date: Mon Aug 13 10:43:00 2018 +0200 Some minor cleaning up. commit be3a0740d84f786b88e661b3e6dfd473705e3f1e Author: Alan Garny Date: Fri Aug 10 17:39:53 2018 +0200 Some minor cleaning up. commit c74aeca7f6be2517a7b65f76ec79ada7ac763241 Author: Alan Garny Date: Fri Aug 10 17:27:34 2018 +0200 Some minor cleaning up. commit 6b14c1ffa8a18defd8cc12fc9b1485f2e16ca2ba Author: Alan Garny Date: Fri Aug 10 17:03:02 2018 +0200 Some minor cleaning up. commit 06739e649bf54ff3f4dd27b3b62da6927f5f40f2 Author: Alan Garny Date: Fri Aug 10 16:48:30 2018 +0200 Some minor cleaning up. commit 6d41eda490c5a6cf2a48e2d78c121603f64fab65 Author: Alan Garny Date: Fri Aug 10 15:43:35 2018 +0200 Some minor cleaning up. commit 892d08291922b6c134ca25a17138e67b2f0a103d Merge: 75f69f5f7 fef29da53 Author: Alan Garny Date: Thu Aug 9 19:44:38 2018 +0200 Merge branch '\''master'\'' into issue1544. commit fef29da53f92bb2d2e4a95eeae8c393d70692826 Merge: 20643e181 966322160 Author: Alan Garny Date: Thu Aug 9 19:43:56 2018 +0200 Renamed "Data Store" to "Data store". commit 9663221603cc44d157c70da6bf0e4068afa17ad8 Author: Alan Garny Date: Thu Aug 9 18:54:32 2018 +0200 Renamed "Data Store" to "Data store". commit 75f69f5f70ee9acdf70acbd3c7cbe71a6abf6b72 Author: Alan Garny Date: Thu Aug 9 18:49:58 2018 +0200 Some minor cleaning up. commit ea641ac2a40dea62acd593a11b59a6def99de7a9 Merge: dda848119 20643e181 Author: Alan Garny Date: Thu Aug 9 18:45:31 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 20643e181707705907df95c8310a1902842ac10e Merge: 87e950d81 48266ca2b Author: Alan Garny Date: Thu Aug 9 18:44:41 2018 +0200 Clang code model related cleaning up (#1747). commit 48266ca2b5823e44b1017221a819342bf3653c99 Author: Alan Garny Date: Thu Aug 9 18:30:22 2018 +0200 Clang code model related cleaning up (#1747). commit dda848119ece25027ce5c4c68d6a8d619544a489 Author: Alan Garny Date: Thu Aug 9 11:52:05 2018 +0200 Some minor cleaning up. commit 05f149eb02ccb334d42727011287b344aaf6030f Merge: a5f47f665 87e950d81 Author: Alan Garny Date: Wed Aug 8 22:21:57 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 87e950d816aa114b0e0dcf4d42b92faec1cb2445 Merge: ae86dfbf3 bcc442cb9 Author: Alan Garny Date: Wed Aug 8 22:20:38 2018 +0200 BioSignalML plugin: rename it to libBioSignalML (closes #1754). commit bcc442cb9c3f6d8c31237d9ab53ba6834da907fa Author: Alan Garny Date: Wed Aug 8 21:41:45 2018 +0200 BioSignalML plugin: renamed it to libBioSignalML (1754). commit ae86dfbf3efcb41b54b6e7307955f88042a95f34 Merge: 93e345372 579cc663e Author: Alan Garny Date: Wed Aug 8 21:15:32 2018 +0200 Some minor cleaning up. commit 579cc663e18f75339f94228b8a7a52a3cf4e6799 Author: Alan Garny Date: Wed Aug 8 17:21:18 2018 +0200 Some minor cleaning up. commit 97833eaaae37ea33a7bd1dfafa1f3d7abb130592 Author: Alan Garny Date: Wed Aug 8 17:14:18 2018 +0200 Some minor cleaning up. commit 1762a76e7f09c042c8fc731fe8d8e955105b1f4f Author: Alan Garny Date: Wed Aug 8 15:05:05 2018 +0200 Some minor cleaning up. commit 2e78cdd5c78c17b84d5f4d3a64f8b903bc28594b Author: Alan Garny Date: Wed Aug 8 14:52:22 2018 +0200 Some minor cleaning up. commit 24dc61e88b3eeb814ab6357fe5d7577cefad11c1 Author: Alan Garny Date: Wed Aug 8 14:50:54 2018 +0200 Some minor cleaning up. commit efc5476a5518fe4b59deb8b10665a58382b79652 Author: Alan Garny Date: Wed Aug 8 13:23:13 2018 +0200 Some minor cleaning up. commit 2e8f3a82ca9bba3574d7e222af8ce06a32995014 Author: Alan Garny Date: Wed Aug 8 11:45:32 2018 +0200 Some minor cleaning up. commit a5f47f66509c98c859a3baac7453df4151ffca75 Author: Alan Garny Date: Wed Aug 8 08:49:54 2018 +0200 Help window: make sure that we can directly see images (#1544). Indeed, when we have a page with an image on its own (e.g. the GUI page in the user documentation), then Sphinx will generate something like , which means that we can click on the image to get the image itself (as opposed to a web page with an image in it). Until now, our Help window only supported "proper" web pages, not images or anything else. Now, it should support anything that a Web browser supports. commit 30eed050f1b1ef279f70b6be4b5dfdf4d9ca76db Author: Alan Garny Date: Tue Aug 7 22:17:05 2018 +0200 Some minor cleaning up. commit 793526df2cb68cfa0f9011627920d3df31bc7066 Author: Alan Garny Date: Tue Aug 7 21:47:45 2018 +0200 User documentation: make sure that we can see images (#1544). commit 00a6e2593f87437b8485f8577b81f2668184d698 Author: Alan Garny Date: Tue Aug 7 17:50:13 2018 +0200 Changed our requirements for screenshots. commit a4b0b9862c6b93857480dd6245bf88dc88e1c875 Author: Alan Garny Date: Tue Aug 7 16:40:37 2018 +0200 User documentation: make sure that we can see sub-pages (#1544). commit 0fc67f7c96fad59e994459b0b8c9f99e02d4beeb Merge: 7e8391547 93e345372 Author: Alan Garny Date: Tue Aug 7 10:55:35 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 93e3453728245287379e4ab4199c48ae5496ff7a Merge: 02f64f6b9 dc92446a2 Author: Alan Garny Date: Tue Aug 7 10:54:41 2018 +0200 Clang code model related cleaning up. commit dc92446a232a8e2466efb06f3d5e9e2cc9639d0f Author: Alan Garny Date: Tue Aug 7 10:40:32 2018 +0200 Clang code model related cleaning up. commit c6d5dcfb0736e8a778ab7f06225882177c16509f Author: Alan Garny Date: Tue Aug 7 10:34:32 2018 +0200 Clang code model related cleaning up. commit 0cdf8ec0d71d312b04b96c14713508f20e374fb6 Author: David Brooks Date: Tue Aug 7 11:25:00 2018 +1200 Python: `run_python` script works on all platforms. commit 20cf8bbfda017ccfef348f884c344228c900d56a Author: David Brooks Date: Tue Aug 7 10:52:10 2018 +1200 Python: `run_python` script works under macOS. commit 7e8391547908234b27df6aefc7787fc2b5309c22 Merge: 050680abe 02f64f6b9 Author: Alan Garny Date: Mon Aug 6 13:20:16 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 02f64f6b94d06c0b032b2c203d5f06a6371facc9 Merge: 74e15f44d 01ab74abf Author: Alan Garny Date: Mon Aug 6 13:18:50 2018 +0200 OpenSSL: move to the 1.1.x branch (closes #1751). commit 01ab74abf1e5e3b04343272b43dfc12818a04574 Author: Alan Garny Date: Mon Aug 6 12:23:14 2018 +0200 Slight update to our downloads page (#1751). commit 0b5ab8472cf78067360485fdfc14c37811de640c Author: Alan Garny Date: Mon Aug 6 12:20:55 2018 +0200 Don'\''t only build our OpenSSL (and libgit2) package (#1751). commit faf767d5dd7ddd9a7316e07af857112e76a9c105 Author: Alan Garny Date: Mon Aug 6 12:20:00 2018 +0200 OpenSSL (and libgit2) package: new binaries (#1751). commit 4518889bddac944fbcf9fe03cfbd89b257c10504 Author: Alan Garny Date: Mon Aug 6 11:37:06 2018 +0200 OpenSSL: move to the 1.1.x branch (#1751). commit 1cf072ed8e1ad7bd263ec8274e980af86e67154a Author: Alan Garny Date: Mon Aug 6 11:27:52 2018 +0200 Also build our libgit2 package (#1751). commit 64c3ac7f4b0396639e21cee80a739a839b776cb8 Author: Alan Garny Date: Mon Aug 6 11:27:10 2018 +0200 Also build our libgit2 package (#1751). commit 6368f70fb85cd3575b5581cf4df4f60bf35fa50a Author: Alan Garny Date: Mon Aug 6 11:16:03 2018 +0200 Only build our OpenSSL package (#1751). commit 959357941bfaf55698f7fc080ef5b0ab48126d52 Author: David Brooks Date: Mon Aug 6 21:11:53 2018 +1200 Python: work on utility to run OpenCOR Python code from the command line. commit 050680abe5d87a82adec5033a743db77d13afbd3 Merge: e97515349 74e15f44d Author: Alan Garny Date: Sat Aug 4 16:49:03 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 74e15f44d27860bbf46c46ec30f2d515aa409368 Merge: ffe6f7486 e2a052deb Author: Alan Garny Date: Sat Aug 4 16:47:46 2018 +0200 Some minor cleaning up. commit e2a052deb7e70eb27b95ffebc7aea3577fa8a094 Author: Alan Garny Date: Sat Aug 4 16:32:36 2018 +0200 Some minor cleaning up. commit e9751534968293262567ad613c2f0fc3814788eb Merge: 3541c3bc7 ffe6f7486 Author: Alan Garny Date: Sat Aug 4 16:24:19 2018 +0200 Merge branch '\''master'\'' into issue1544. commit ffe6f7486f8a60b21879184c210434326c6838a3 Merge: 134632df4 b8bbf9d71 Author: Alan Garny Date: Sat Aug 4 16:22:35 2018 +0200 Clang code model related cleaning up (closes #1747). commit b8bbf9d715d4278360a6a8c2ae161fe655dbf53e Author: Alan Garny Date: Sat Aug 4 15:44:36 2018 +0200 Clang code model related cleaning up (#1747). commit 506f5108e7da34c715a5b31d9fc7afd9a189ce53 Author: Alan Garny Date: Sat Aug 4 15:32:15 2018 +0200 Clang code model related cleaning up (#1747). commit 20c59e1a2011f92bb1877ae7330e43e144ea0793 Author: Alan Garny Date: Sat Aug 4 15:07:05 2018 +0200 Clang code model related cleaning up (#1747). Had to revert to this otherwise we can’t build on Windows using MSVC. commit 5bccab3cd9770be6c6d5e616fed07de44177f999 Author: Alan Garny Date: Sat Aug 4 15:01:57 2018 +0200 Clang code model related cleaning up (#1747). commit 9006151dd45111f5c5b6075655a18cc003521b66 Author: Alan Garny Date: Sat Aug 4 13:41:18 2018 +0200 Clang code model related cleaning up (#1747). commit 04ca2a4b15d9f5b8e021ad8b87d796d535dce8dc Author: Alan Garny Date: Sat Aug 4 11:37:43 2018 +0200 Clang code model related cleaning up (#1747). commit 722f244569bea114ef3eff72eba7a653742130f7 Author: Alan Garny Date: Sat Aug 4 11:33:25 2018 +0200 Clang code model related cleaning up (#1747). commit cf365e80b7036494bc1b4c230c2c1315fcc65d66 Author: Alan Garny Date: Sat Aug 4 11:28:28 2018 +0200 Clang code model related cleaning up (#1747). commit 8888eb6b21e1911f552bd0c618b08d527aaa7d08 Author: Alan Garny Date: Sat Aug 4 11:28:12 2018 +0200 Clang code model related cleaning up (#1747). commit f8c46556747bb035277d8962ec035a666eb46da4 Author: Alan Garny Date: Sat Aug 4 11:10:38 2018 +0200 Clang code model related cleaning up (#1747). commit fdc19b24b087469da4c66fb2553817fbecf60bde Author: Alan Garny Date: Sat Aug 4 10:34:37 2018 +0200 Clang code model related cleaning up (#1747). commit 098fcb19abb2ab3e4eb050a5a75443736d95e1b6 Author: Alan Garny Date: Sat Aug 4 10:13:04 2018 +0200 Some minor cleaning up. commit c67b743bf00d65beca606ce1aca5da5500f741e7 Author: Alan Garny Date: Sat Aug 4 10:11:24 2018 +0200 Clang code model related cleaning up (#1747). commit 08e78d159e371ca9bbf5bcdb2eac8308196fdb03 Author: Alan Garny Date: Sat Aug 4 09:49:34 2018 +0200 Clang code model related cleaning up (#1747). commit 829b71727504c4b0e25b66c51b7d5d677c93665f Author: Alan Garny Date: Sat Aug 4 09:32:03 2018 +0200 Clang code model related cleaning up (#1747). commit e23624979228cad70bbf92cb619844b148e17f4b Author: Alan Garny Date: Sat Aug 4 09:22:37 2018 +0200 Clang code model related cleaning up (#1747). commit ef443b58cd63041afb5e91a35855e2f5beebc7b1 Author: Alan Garny Date: Sat Aug 4 09:16:22 2018 +0200 Clang code model related cleaning up (#1747). commit 717c1c5ae0d6bab225cc27e11c21499e9be92a06 Author: Alan Garny Date: Sat Aug 4 09:09:36 2018 +0200 Clang code model related cleaning up (#1747). commit 4383e5a7deee6fc08f28dac95419cf8e912e2d17 Author: Alan Garny Date: Sat Aug 4 08:39:56 2018 +0200 Some minor cleaning up. commit 123578f6b3364939778623727c3e16931451eea1 Author: Alan Garny Date: Sat Aug 4 08:27:58 2018 +0200 Some minor cleaning up. commit fcf00aa758a8f3f03e00e6098c32fa15c0a3d033 Author: Alan Garny Date: Sat Aug 4 08:19:59 2018 +0200 Clang code model related cleaning up (#1747). commit 6176595a4027c1e79fb8ed3ec7aba344859ee1cc Author: Alan Garny Date: Sat Aug 4 00:15:16 2018 +0200 Clang code model related cleaning up (#1747). commit 144735e609fdfd87172809a4873c068dcf223c9b Author: Alan Garny Date: Fri Aug 3 23:58:05 2018 +0200 Clang code model related cleaning up (#1747). commit bb7ab86c91de14e7faaa2fb41cffea6af9ef9dd0 Author: Alan Garny Date: Fri Aug 3 23:42:19 2018 +0200 Clang code model related cleaning up (#1747). commit 08aa99dd31b408d4909bfddce503e4fa372d3033 Author: Alan Garny Date: Fri Aug 3 22:49:18 2018 +0200 Clang code model related cleaning up (#1747). commit e6d2334c567281356c8d3ff96dca81b3fadd5818 Author: Alan Garny Date: Fri Aug 3 22:32:56 2018 +0200 Clang code model related cleaning up (#1747). commit 2e9ea0035596fd39f28fd8665eb703483c9e25bb Author: Alan Garny Date: Fri Aug 3 22:11:12 2018 +0200 CellML support: fixed a small problem with CellmlFileRuntimeParameter::formattedUnit(). commit 93417b2a49bb8322f1b8600f98ff80136efdedc7 Author: Alan Garny Date: Fri Aug 3 21:23:23 2018 +0200 Clang code model related cleaning up (#1747). commit 590761daf628fbda4ffd5d5b6f6a7ad469f4dabc Author: Alan Garny Date: Fri Aug 3 18:47:15 2018 +0200 Clang code model related cleaning up (#1747). commit b13126200975f03aa9d3440d4a1039c30d6dea80 Author: Alan Garny Date: Fri Aug 3 18:40:17 2018 +0200 Clang code model related cleaning up (#1747). commit 7c5c44e1b30f1ff7cea9f70a9afe8ef9f2957dd4 Author: Alan Garny Date: Fri Aug 3 18:36:31 2018 +0200 Clang code model related cleaning up (#1747). commit 1bb9c628f275f762219a6b13fa0ae212a23730c9 Author: Alan Garny Date: Fri Aug 3 18:07:39 2018 +0200 Clang code model related cleaning up (#1747). commit 40c98877b884cdf4c708a735447aa0e8995f2631 Author: Alan Garny Date: Fri Aug 3 17:20:40 2018 +0200 Clang code model related cleaning up (#1747). commit a0d7b7ccbce6e91350ad3b0c81635cc0ce569506 Author: Alan Garny Date: Fri Aug 3 17:07:35 2018 +0200 Clang code model related cleaning up (#1747). commit 3c5b7201a13b048f2e56ee8bb908f77b600ff0ea Author: Alan Garny Date: Fri Aug 3 17:03:25 2018 +0200 Clang code model related cleaning up (#1747). commit 3953291c4980c29eb298276fad8bcdf9fb8fa9ce Author: Alan Garny Date: Fri Aug 3 16:28:42 2018 +0200 Clang code model related cleaning up (#1747). commit 89e545619fad43f078f6a9eddb07f28dc304fe60 Author: Alan Garny Date: Fri Aug 3 16:06:31 2018 +0200 Clang code model related cleaning up (#1747). commit 1dfbd7c2b75c61384cdecc91cf377b42660e128e Author: Alan Garny Date: Fri Aug 3 15:23:34 2018 +0200 Clang code model related cleaning up (#1747). commit f405530a712d61983f8104ea1842cb847a7c390b Author: Alan Garny Date: Fri Aug 3 15:19:29 2018 +0200 Clang code model related cleaning up (#1747). commit 8094b2232e0167693ac53c5e01d2eb6e797ef492 Author: Alan Garny Date: Fri Aug 3 15:13:14 2018 +0200 Clang code model related cleaning up (#1747). commit 543da68e5e33ee84b028e5e4f773453824d13772 Author: Alan Garny Date: Fri Aug 3 15:11:19 2018 +0200 Clang code model related cleaning up (#1747). commit 9574fd12b3c54a5ef03e31a208043aa5e790af69 Author: Alan Garny Date: Fri Aug 3 15:09:49 2018 +0200 Clang code model related cleaning up (#1747). commit 8c170333c2436eafa99b130c1f2362200685fb77 Author: Alan Garny Date: Fri Aug 3 15:06:43 2018 +0200 Clang code model related cleaning up (#1747). commit bd2fbe6e8b26fd1a404d9715667892d9ce64c5ff Author: Alan Garny Date: Fri Aug 3 15:05:13 2018 +0200 Clang code model related cleaning up (#1747). commit 2cf5abe7469e2ffd679805d46d7c01809bca0fd1 Author: Alan Garny Date: Fri Aug 3 15:03:15 2018 +0200 Clang code model related cleaning up (#1747). commit ed7a8c92c1698184e5d7848222f7c7eb4c36258c Author: Alan Garny Date: Fri Aug 3 14:50:40 2018 +0200 Clang code model related cleaning up (#1747). commit cddab9ce3bc7690becdbf4ce73a8e7687d5a7c9a Author: Alan Garny Date: Fri Aug 3 14:47:39 2018 +0200 Clang code model related cleaning up (#1747). commit e17f490b92de2cffa6d1eb4b3c383bfd30ba6b09 Author: Alan Garny Date: Fri Aug 3 14:39:03 2018 +0200 Clang code model related cleaning up (#1747). commit 3e165f53ae37ee170ef793153513c08eee7227d7 Author: Alan Garny Date: Fri Aug 3 13:43:04 2018 +0200 Clang code model related cleaning up (#1747). commit 5ab8444c653ceabc98ce475cc50a7a1af83386cf Author: Alan Garny Date: Fri Aug 3 13:25:44 2018 +0200 Clang code model related cleaning up (#1747). commit 274f5ba8b37cab3ccbd6a4510cd0f26a0984ff85 Author: Alan Garny Date: Fri Aug 3 13:18:27 2018 +0200 Clang code model related cleaning up (#1747). commit 3541c3bc7e64d0e90240d9c66bd0d8fcf9a579c1 Merge: a6e76e9bb 134632df4 Author: Alan Garny Date: Thu Aug 2 16:50:35 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 134632df493964a998ed802113b9e4a6d403a539 Merge: a1ede63e1 3bf9afe69 Author: Alan Garny Date: Thu Aug 2 16:49:50 2018 +0200 Removed the Analysis category of plugins. commit 3bf9afe6921748012cb8b805c8cf5e75878fb6f8 Author: Alan Garny Date: Thu Aug 2 16:13:23 2018 +0200 Removed the Analysis category of plugins. Indeed, although we might have some analysis plugins at some point, it happens that we don'\''t have any at this stage, so no point in handling that category for now. commit a6e76e9bb0c8236ca992decbc2d5570f22507da7 Merge: 1d89165fe a1ede63e1 Author: Alan Garny Date: Thu Aug 2 15:36:14 2018 +0200 Merge branch '\''master'\'' into issue1544. commit a1ede63e18e90d8278bdd3f8b642d067d7396a01 Merge: 12acfba62 3ea1480fd Author: Alan Garny Date: Thu Aug 2 15:35:22 2018 +0200 SUNDIALS: upgrade to version 3.1.2 (closes #1743). commit 3ea1480fdd7bf510bebdf0cf896b31adf58fa83d Author: Alan Garny Date: Thu Aug 2 15:11:25 2018 +0200 Slight updates to our downloads pages (#1743). commit 58d29b51460a76be48a1c31fa3343bd2695b00e6 Author: Alan Garny Date: Thu Aug 2 15:08:48 2018 +0200 Don'\''t build the SUNDIALS package only (#1743). commit 09d42ff46768679bba5db4c1363ca0a4e56c9134 Author: Alan Garny Date: Thu Aug 2 15:07:48 2018 +0200 SUNDIALS package: new binaries (#1743). commit e7f7475b5385f69b9a3d4c1154c6377684467f5b Author: Alan Garny Date: Thu Aug 2 11:35:48 2018 +0200 SUNDIALS package: upgraded to version 3.1.2 (#1743). commit 0f03b020962e6f60e94b3d2c08c4b0fdc14230b8 Author: Alan Garny Date: Thu Aug 2 10:32:18 2018 +0200 Only build our SUNDIALS package (#1743). commit 1d89165fee35cc1692a0090c4628926e1ef7bca4 Merge: d4f59582a 12acfba62 Author: Alan Garny Date: Fri Jul 20 14:02:46 2018 -1000 Merge branch '\''master'\'' into issue1544. commit 12acfba62a558e426013a4a2fe35e017e21dad73 Merge: d4d59c38a 7a42c9253 Author: Alan Garny Date: Fri Jul 20 14:01:36 2018 -1000 Replaced some dynamic_cast'\''s with a qobject_cast. commit 7a42c925388b3b3ace33383b9c31240846b52c34 Author: Alan Garny Date: Fri Jul 20 13:27:04 2018 -1000 Some minor cleaning up. commit fd55474e5e5fee940aa7c76338a5f2dde5089aea Author: Alan Garny Date: Fri Jul 20 13:26:43 2018 -1000 Replaced some dynamic_cast'\''s with a qobject_cast. commit d4f59582a62ebe01ec296ac628cbeaa1dab46dcc Author: Alan Garny Date: Fri Jul 20 10:41:20 2018 -1000 Fixed the location of some CellML test files (#1544). commit 293736936116096d82b628208e85cf3f36d4c4d7 Merge: 2823a010c d4d59c38a Author: Alan Garny Date: Thu Jul 19 17:41:03 2018 -1000 Merge branch '\''master'\'' into issue1544. commit d4d59c38a978ec640b87047f7cbd99ac94aefa7d Merge: 044ddcc22 e2ab24a34 Author: Alan Garny Date: Thu Jul 19 17:38:05 2018 -1000 New snapshot. commit e2ab24a34d52dbc6f18595dba4c7ad89e15811f3 Author: Alan Garny Date: Thu Jul 19 17:22:33 2018 -1000 New snapshot. commit 37e2af7620fc7755b8b98ea7b35a800b426a8921 Author: Alan Garny Date: Thu Jul 19 17:19:55 2018 -1000 Slight update to our downloads page. commit 044ddcc22592c7679379b2c622da9405ebbbb8ae Merge: ad4c9a8ac e36d2b096 Author: Alan Garny Date: Tue Jul 17 19:52:54 2018 -1000 Various cleaning ups and improvements to our busy widget framework. commit e36d2b09681dea058c159074640a33d06c2a6d91 Author: Alan Garny Date: Tue Jul 17 19:07:17 2018 -1000 Busy widget: allow the forcing of its hiding. This is needed for the CellML Annotation view since the looking up of a ontological terms may result in several showing of the busy widget, but only one (final) hiding of it. commit 3d8ad37a124a673bfcb8f79dbb9c86c7a3fb0598 Author: Alan Garny Date: Tue Jul 17 18:44:28 2018 -1000 Busy widget: make it reentrant and only show itself if its owner is visible. Indeed, to open about a SED-ML file would otherwise have resulted in the busy widget being shown, shown, hidden and hidden, with the second “shown” being due to reading the corresponding CellML file. commit 0a0d80c92bccc8376d84f6a91776de5570aab907 Author: Alan Garny Date: Tue Jul 17 17:59:59 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in CentralWidget::updateGui() rather than MainWindow::updateGui(). This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This didn’t use to happen, but is the indirect result of our use of the busy widget (see the notes in commit 5ed445d). commit 4a8816177fca03d83b909efa489dd1e9683cd341 Author: Alan Garny Date: Tue Jul 17 17:57:08 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in CentralWidget::updateGui() rather than MainWindow::updateGui(). This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This didn’t use to happen, but is the indirect result of our use of the busy widget (see the notes in commit 5ed445d). commit d027c998a7efce74622006e5a0cacbbc78f75717 Author: Alan Garny Date: Tue Jul 17 17:55:30 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in CentralWidget::updateGui() rather than MainWindow::updateGui(). This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This didn’t use to happen, but is the indirect result of our use of the busy widget (see the notes in commit 5ed445d). commit 35e2890f09d5d71459b22cebe53e033346fe1836 Author: Alan Garny Date: Tue Jul 17 17:32:24 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in CentralWidget::updateGui() rather than MainWindow::updateGui(). This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This didn’t use to happen, but is the indirect result of our use of the busy widget (see the notes in commit 5ed445d). commit 8b2d7d4469e6013f99d58760991b56e02b137e35 Author: Alan Garny Date: Tue Jul 17 16:50:07 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in CentralWidget::updateGui() rather than MainWindow::updateGui(). This work needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This didn’t use to happen, but is the indirect result of our use of the busy widget (see the notes in commit 5ed445d). commit 702fd8deadc156cf010a3c3318a0ac15dc24d9aa Author: Alan Garny Date: Tue Jul 17 16:37:07 2018 -1000 Some minor cleaning up. commit c13fe134760100af66e8173504116f218c8904e6 Author: Alan Garny Date: Tue Jul 17 14:48:40 2018 -1000 Some minor cleaning up. commit 1daaf71cd4fa58c9586452621b1f18f903e9ba8c Author: Alan Garny Date: Tue Jul 17 14:43:28 2018 -1000 Some minor cleaning up. commit abff33bccdd594aefeee104c4a09a3351095c286 Author: Alan Garny Date: Tue Jul 17 14:24:03 2018 -1000 Busy widget: don'\''t support nested calls anymore. We used to support nested calls because of our former calls to readFileWithBusyWidget() (see commits 3011d9b and 5ed445d), but it wasn’t the proper way of doing things. commit 5ed445d93770248d9911fd9047046c6c1796e439 Author: Alan Garny Date: Tue Jul 17 13:59:41 2018 -1000 Removed our readFileWithBusyWidget() methods. Indeed, in half of the cases where we were using them, we didn’t want to hide our busy widget, so… no point in having them as such… commit 3011d9ba0daa59fa4dd91d60408cbe0874f346a7 Author: Alan Garny Date: Tue Jul 17 13:25:08 2018 -1000 Some minor cleaning up. commit 2cd79f72831a8926ebd5b21f4d88d495cedd8058 Author: Alan Garny Date: Tue Jul 17 12:18:54 2018 -1000 Some minor cleaning up. commit 4e6140f16b9c2e6e646eeca615746ce3cde19523 Author: Alan Garny Date: Tue Jul 17 09:44:25 2018 -1000 QScintilla support: some minor cleaning up. commit 1cea09f04cf24638f97b3142748681972eb3534f Author: Alan Garny Date: Mon Jul 16 16:59:00 2018 -1000 Some minor cleaning up. commit 2823a010cde7d2766f3851d00c84e033258df96d Merge: 0f0ce7a98 ad4c9a8ac Author: Alan Garny Date: Fri Jul 13 11:06:50 2018 +0100 Merge branch '\''master'\'' into issue1544. commit ad4c9a8ac784d6f75b835c2a724796e35dc8ab2b Merge: 0f957f7d8 db2922176 Author: Alan Garny Date: Fri Jul 13 11:05:29 2018 +0100 Improved support for new files. commit db2922176cb4745b7855b6ebe95aa61d96357de0 Author: Alan Garny Date: Fri Jul 13 10:50:26 2018 +0100 Central widget: provide a better message for views that don'\''t support new files. commit a920ea9c95c040dd9b5f0e6fdb3b55231dfe6e02 Author: Alan Garny Date: Fri Jul 13 10:46:14 2018 +0100 Simulation Experiment view: specifically don'\''t support new files. commit 7255d5a4c6fb81ca925b8972a3e81604f63ff652 Author: Alan Garny Date: Fri Jul 13 10:45:29 2018 +0100 CellML Annotation view: specifically don'\''t support new files. commit 95e289e295aecf1402261bc3e5f5affcc7044b62 Author: Alan Garny Date: Fri Jul 13 10:26:14 2018 +0100 Some minor cleaning up. commit 0f0ce7a98cb375018560ce042f391716cf60fe22 Merge: 41cbd2093 0f957f7d8 Author: Alan Garny Date: Thu Jul 12 15:52:55 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 0f957f7d892a881df02137cb11be9a5eb8ff7342 Merge: e9733f660 94041d9a5 Author: Alan Garny Date: Thu Jul 12 15:51:34 2018 +0100 Text-based views: support new (i.e. empty) files. commit 94041d9a505af9f4be1c89781222a85abd34b083 Author: Alan Garny Date: Thu Jul 12 15:33:26 2018 +0100 Text-based views: support new (i.e. empty) files. commit 41cbd2093fd6782cf1d980b6bf9d324a0c1df248 Merge: 464555e75 e9733f660 Author: Alan Garny Date: Wed Jul 11 17:43:20 2018 +0100 Merge branch '\''master'\'' into issue1544. commit e9733f66030a388a9238fac25c43a2e85acb3f63 Merge: 61cd92cbe 52ef9b800 Author: Alan Garny Date: Wed Jul 11 17:40:45 2018 +0100 libgit2: upgraded to version 0.27.3 (closes #1736). commit 52ef9b80057dacbd39f185eb3902d636bf1b38b0 Author: Alan Garny Date: Wed Jul 11 16:06:38 2018 +0100 Slight update to our downloads page (#1736). commit c157610fb2657ba43599d63f18cd4c3634c60769 Author: Alan Garny Date: Wed Jul 11 16:06:15 2018 +0100 Don'\''t only build the libgit2 package (#1736). commit 67ec05e512eedfae5428967ed84a12530bd6908a Author: Alan Garny Date: Wed Jul 11 16:05:52 2018 +0100 libgit2 package: binaries for version 0.27.3 (#1736). commit 67b7c9eac6f524d74e8271730ab933abdfc6bc5a Author: Alan Garny Date: Wed Jul 11 15:57:04 2018 +0100 Some minor cleaning up. commit 200f6f5d0635752c99846f9778e8bb787e07a74a Author: Alan Garny Date: Wed Jul 11 15:52:20 2018 +0100 Only build the libgit2 package (#1736). commit f9edbede708610bb69f7ad48515185ecdea80111 Author: Alan Garny Date: Wed Jul 11 15:51:36 2018 +0100 libgit2: upgraded to version 0.27.3 (#1736). commit 464555e7557d4391467f20fc49385b7df7f9159f Merge: a6d8c42af 61cd92cbe Author: Alan Garny Date: Wed Jul 11 10:52:24 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 61cd92cbe0c5b70aea9e56baf87fc6a158ba8747 Merge: 4198e53cc e994a3587 Author: Alan Garny Date: Wed Jul 11 10:51:27 2018 +0100 Editor widget: make sure that people know whether we can find/replace. commit e994a3587a419e3492f7cf44c423ddd06ca667ba Author: Alan Garny Date: Wed Jul 11 10:37:29 2018 +0100 Editor widget: make sure that people know whether we can find/replace. My bad, I cleaned up some code and remove something that I should clearly not have been removed! commit a6d8c42af269330bfc2753cb88e3f999b46351d2 Merge: 9644f0651 4198e53cc Author: Alan Garny Date: Sun Jul 8 12:28:37 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 4198e53cc36695052f6cb8e53b1400fda91a52e3 Merge: 0984550f0 2587c19b0 Author: Alan Garny Date: Sun Jul 8 12:27:11 2018 +0100 libgit2: upgraded to version 0.27.2 (closes #1732). commit 2587c19b037ed430f939510e1e747fbebb21c18e Author: Alan Garny Date: Sun Jul 8 12:09:07 2018 +0100 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit b3883a285300c582259c96076bc4018bc022219b Author: Alan Garny Date: Sun Jul 8 11:54:06 2018 +0100 Don'\''t only build the libgit2 plugin (#1732). commit 7b8903123dbbe7d31a2329a1a29087d1b0dd6ba4 Author: Alan Garny Date: Sun Jul 8 11:52:33 2018 +0100 libgit2 plugin: binaries for version 0.27.2 (#1732). commit 58d19ec9af21585a2bc744fd24846d3d53e52936 Author: Alan Garny Date: Sat Jul 7 16:30:33 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit cd916ac3dc91f151f5ed06ec0f684fd863dcac1b Author: Alan Garny Date: Sat Jul 7 11:36:21 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit 8f7275df297ea4e807b62eb8ad7c72e891e56661 Author: Alan Garny Date: Sat Jul 7 10:32:57 2018 +0200 libgit2 plugin: binaries for version 0.27.2 (#1732). commit 0855b0983cc65e4eb5d5636016a97c5506221ac2 Author: Alan Garny Date: Sat Jul 7 10:20:36 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit fb4c866848fe7d9c7662e62403c6ae389382bbaf Author: Alan Garny Date: Sat Jul 7 10:06:33 2018 +0200 Slight update to our downloads page (#1732). commit 661cfed8cff64d669cfee639c076f237aa2f04b6 Author: Alan Garny Date: Sat Jul 7 10:06:07 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit 891851d2c60e35389bc2e5de320be2036cd0383e Author: Alan Garny Date: Sat Jul 7 09:52:02 2018 +0200 Only build the libgit2 plugin (#1732). commit 1b4f7b62188081bcdf38cdca0f9d96eddd89fe6e Author: Alan Garny Date: Sat Jul 7 09:50:33 2018 +0200 Only build the libgit2 plugin (#1732). commit 3c936c3f9d623f328fadc5ffa7252a6ff813d375 Author: Alan Garny Date: Sat Jul 7 09:47:26 2018 +0200 Only build the libgit2 plugin (#1732). commit 2d11b9c765a1dea3216eb8cf5aadab62cf043314 Author: Alan Garny Date: Sat Jul 7 09:46:56 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 (#1732). commit 0984550f07f5bb6deab73dd4856a47857837a018 Merge: bf27a607f 110231657 Author: Alan Garny Date: Sat Jul 7 09:24:32 2018 +0200 QScintilla: upgraded to version 2.10.7 (closes #1731). commit 110231657e02d5b88b2d34db05e8c34d199abef2 Author: Alan Garny Date: Sat Jul 7 09:10:20 2018 +0200 Slight update to our downloads page (#1731). commit 9ca0e39f73dbd5391c5edd1158989a18312b2253 Author: Alan Garny Date: Sat Jul 7 09:10:03 2018 +0200 Don'\''t only build our QScintilla plugin (#1731). commit 81ac2c8042b311587a9dd31beb239ee219ba0ba8 Author: Alan Garny Date: Sat Jul 7 09:09:23 2018 +0200 QScintilla package: binaries for version 2.10.7 (#1731). commit 306fc8124393b5c05f22f6c995a3778e6754f2b8 Author: Alan Garny Date: Sat Jul 7 08:56:30 2018 +0200 Only build our QScintilla plugin (#1731). commit db432842fa0bdb7160c1fdb15070a52a18479b7c Author: Alan Garny Date: Sat Jul 7 08:54:42 2018 +0200 Only build our QScintilla plugin (#1731). commit 09c1b296cfeb3f5adae81a02c8ee31430e0c3200 Author: Alan Garny Date: Sat Jul 7 08:54:13 2018 +0200 QScintilla: upgraded to version 2.10.7 (#1731). commit 9644f0651d140a622056b1ab7a93ddb3b56ae1a1 Merge: 2ed63ead6 bf27a607f Author: Alan Garny Date: Sat Jul 7 07:59:51 2018 +0200 Merge branch '\''master'\'' into issue1544. commit bf27a607fc6d55cd97d6d37b0ffcfd2998bc8f29 Merge: 854dfcaf6 363683a07 Author: Alan Garny Date: Sat Jul 7 07:58:00 2018 +0200 LLVM+Clang: upgraded to version 6.0.1 (closes #1729). commit 363683a07486c15f9f7dabee9735b2bcf488a007 Author: Alan Garny Date: Sat Jul 7 07:39:05 2018 +0200 Slight update to our downloads page (#1729). commit 74453bc3c646f8df17523db4149f400c6c5db0cf Author: Alan Garny Date: Sat Jul 7 07:36:51 2018 +0200 Stop building only LLVM+Clang (#1729). commit c7117be64441dbb3737eac32bfa431af583e2b9d Author: Alan Garny Date: Sat Jul 7 07:36:22 2018 +0200 LLVM+Clang package: binaries for version 6.0.1 (#1729). commit 113ede87ca71368d260dc015d7d76266b71d3617 Author: Alan Garny Date: Fri Jul 6 17:08:31 2018 +0200 Only building LLVM+Clang (#1729). commit 821c2d5ccb2fca51ea792d100906aa973c26f234 Author: Alan Garny Date: Fri Jul 6 17:07:44 2018 +0200 LLVM+Clang plugin: getting ready for LLVM+Clang 6.0.1 (#1729). commit 2ed63ead60322c0d2ea3884d08205a2cf21c7d70 Merge: c433ed433 854dfcaf6 Author: Alan Garny Date: Thu Jul 5 19:06:56 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 854dfcaf6c2c58db9902056b9091fe735d8ec6f9 Merge: 76a4a6de3 78a328c2b Author: Alan Garny Date: Thu Jul 5 19:05:01 2018 +0200 CellML-based views: fixed an issue that prevented some views from showing a CellML file that cannot be fully instantiated (closes #1725). commit 78a328c2b24d7d375e31bac452a63edcaa062c09 Author: Alan Garny Date: Thu Jul 5 18:33:57 2018 +0200 Slight update to our downloads page (#1725). commit 35ef0a3258adf0d2dbf62ce4c7884d9caee69dfc Author: Alan Garny Date: Thu Jul 5 18:22:25 2018 +0200 CellML Annotation view: some minor cleaning up. commit 9bdfb941363db7e2ec66044f351c55b072a8d9c3 Author: Alan Garny Date: Thu Jul 5 18:19:32 2018 +0200 Some minor cleaning up. commit 50638206b5902d895088dabc3910d1f2591c44f0 Author: Alan Garny Date: Thu Jul 5 18:18:04 2018 +0200 CellML Annotation view: no need to load a CellML file to view it. Not only that, but if the view can be used for a given file, then we will always be able to retrieve its contents, even if it cannot be fully instantiated. So, no need to check whether it has issues. commit 4ac576bf9be4e663b0ac93286e23911dbb6dfe97 Author: Alan Garny Date: Thu Jul 5 17:27:52 2018 +0200 CellML support: improved our fileVersion() method (#1725). commit 0c6f482177b143cb2073e355f4e32d07cc6fcee6 Merge: 2f531c353 76a4a6de3 Author: Alan Garny Date: Thu Jul 5 14:53:02 2018 +0200 Merge branch '\''master'\'' into issue1725. commit c433ed4339a430df907ca8c13fff69b7f93ab165 Merge: f6910a2cb 76a4a6de3 Author: Alan Garny Date: Thu Jul 5 14:52:33 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 76a4a6de3588500c13c6bc970fc505b7ad621b84 Merge: c9bbf96d6 10e634349 Author: Alan Garny Date: Thu Jul 5 14:51:01 2018 +0200 Some minor cleaning up. commit 10e6343496d3389e9133c4e26ad4c86243927e76 Author: Alan Garny Date: Thu Jul 5 14:36:57 2018 +0200 Some minor cleaning up. commit 2f531c353a34137ed4f1d0fcd7af718b7bf458ad Author: Alan Garny Date: Thu Jul 5 11:57:20 2018 +0200 Some minor cleaning up. commit 39bb9a1104a2d34b393a6cf7207ae3b79c3a4a44 Author: Alan Garny Date: Thu Jul 5 11:53:55 2018 +0200 CellML support: use native file names in error messages. commit f6910a2cba0549afb65b8e0d05773b242225dbdb Author: Alan Garny Date: Thu Jul 5 10:06:47 2018 +0200 Help window: build the plugin only once the Qt help has been generated (#1544). Indeed, before adding that dependency, and after having “cleaned” the project, we had to build it twice to get the Qt help right. (After the first build, the Help window would display a message about qthelp://opencor/doc/user/index.html not being found.) commit 7a8e705fd19da0e72c0650a52509a98a447188d9 Author: Alan Garny Date: Thu Jul 5 09:57:08 2018 +0200 Some minor cleaning up. commit 0e3af57b116a34d0e541216979290edc9f290da7 Author: Alan Garny Date: Thu Jul 5 09:41:53 2018 +0200 Some minor cleaning up. commit e1962460462ba7e44cd2b154625b09703d0b098f Author: Alan Garny Date: Thu Jul 5 09:35:25 2018 +0200 Some minor cleaning up. commit f0c56d2e1fe613783b6e7eb54cec1aa37ac1e89b Author: Alan Garny Date: Thu Jul 5 08:57:01 2018 +0200 Some minor cleaning up. commit 4eb3bf8de65e28243a9bbeb89d09b4669410d049 Author: Alan Garny Date: Thu Jul 5 08:44:27 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 4f66cb9110182e40aa36bba233c271a66353fb05 Merge: 48502358e c9bbf96d6 Author: Alan Garny Date: Thu Jul 5 08:42:25 2018 +0200 Merge branch '\''master'\'' into issue1544. commit c9bbf96d62eed897ef1b7783d7d2a4e683bcddf6 Merge: 3b5d83a94 0ad7a2df8 Author: Alan Garny Date: Thu Jul 5 08:41:28 2018 +0200 Some minor cleaning up. commit 0ad7a2df8845c8ae41e57a9369bbe94de9342701 Author: Alan Garny Date: Thu Jul 5 08:12:56 2018 +0200 Some minor cleaning up. commit 48502358ed6b5916788a854f2ec00edb6e45e823 Merge: e90218519 3b5d83a94 Author: Alan Garny Date: Wed Jul 4 23:21:55 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 3b5d83a94f21f9aa7ddd2a28c29ffbf6225c4d87 Merge: f5b8c268b edd57d0c4 Author: Alan Garny Date: Wed Jul 4 23:20:58 2018 +0200 Some minor cleaning up. commit edd57d0c401736e7071c8b8e44f66c4a98a1b2ac Author: Alan Garny Date: Wed Jul 4 23:06:12 2018 +0200 Some minor cleaning up. commit e90218519b30d8f64da2296cbabdd62ef8c19b9f Merge: 8c1839f9f f5b8c268b Author: Alan Garny Date: Wed Jul 4 22:55:04 2018 +0200 Merge branch '\''master'\'' into issue1544. commit f5b8c268bf60b73f3c1ded76860930f349c7b5ce Merge: 822c8fe29 5eab9a167 Author: Alan Garny Date: Wed Jul 4 22:52:08 2018 +0200 Cleaning up. commit 5eab9a1674d8c6d7c9b356626ed99b57b615277b Author: Alan Garny Date: Wed Jul 4 22:33:31 2018 +0200 Editor widget: the clearing of our find/replace field can be done for us. commit e5bd80d7612d19eb58722b3bac1f2bfd50986120 Author: Alan Garny Date: Wed Jul 4 22:28:09 2018 +0200 Some minor cleaning up. commit 785d1868fa5a263bbf17df1cfa57ccf5332a1c7f Author: Alan Garny Date: Wed Jul 4 22:27:51 2018 +0200 Some minor cleaning up. commit ae1514e234a16845fad9dd2cad3e4c69ed94f828 Author: Alan Garny Date: Wed Jul 4 22:18:18 2018 +0200 Some minor cleaning up. commit 8c1839f9f02740737662638fd04ad862bd2ef94a Author: Alan Garny Date: Wed Jul 4 22:10:37 2018 +0200 Can now show the user-generated documentation within OpenCOR (#1544). … or a red-themed error page, if a given page cannot be found. commit 4606089462bfdb364aa72f0872da4aaffdd06db1 Author: Alan Garny Date: Wed Jul 4 21:10:52 2018 +0200 Help window: silently generate the Qt help after the user/developer help has been generated (#1544). commit 11be84f56e076407cf51a748ad00b543d508ef1f Author: Alan Garny Date: Wed Jul 4 20:58:14 2018 +0200 Help window: generate the Qt help after the user/developer help has been generated (#1544). commit 4ee896d2686af8aef6b03f6f209611aa00e8f743 Author: Alan Garny Date: Wed Jul 4 20:55:54 2018 +0200 Some minor cleaning up. commit f8185459740f2095cc72a6eeb577656fa37a4376 Author: Alan Garny Date: Wed Jul 4 20:32:22 2018 +0200 Slight improvement to our clcachewrapper program. commit 1c811b251796f42ec55537d8a12cb46e6288fe1f Author: Alan Garny Date: Wed Jul 4 17:57:23 2018 +0200 Some minor cleaning up. commit e419c35888524f2842c4f14750b6b81fb151ead8 Author: Alan Garny Date: Wed Jul 4 17:50:21 2018 +0200 Some minor cleaning up. commit 1b29acc63f8d6cf98b824c7ce1b114cb0e48bf19 Author: Alan Garny Date: Wed Jul 4 17:14:59 2018 +0200 Some minor cleaning up. commit 0944fe5456ef7cad668d9441e28ea81eefe4b11e Author: Alan Garny Date: Wed Jul 4 16:53:32 2018 +0200 CSS for our team page (#1544). commit 618602773432c691e25c6897bbe77dbcd3c384ab Author: Alan Garny Date: Wed Jul 4 16:49:42 2018 +0200 Some minor cleaning up. commit f151bcc775120309425767c954ca50071601fc1f Author: Alan Garny Date: Wed Jul 4 16:33:45 2018 +0200 Some minor reorganising (#1544). commit 38fc638c724822d1ba07884b1253e119f7f58266 Author: Alan Garny Date: Wed Jul 4 16:23:21 2018 +0200 Some minor cleaning up. commit c74a1485f9969ca93a6248a6564feb1304acff62 Author: Alan Garny Date: Wed Jul 4 16:16:19 2018 +0200 Renamed a few CSS classes (#1544). commit 588727024249c7a39dc66381140634290bd3f122 Author: Alan Garny Date: Wed Jul 4 16:15:55 2018 +0200 Some minor cleaning up. commit bbdde223dd439ff947ce2ebc72533b2929d4df74 Author: Alan Garny Date: Wed Jul 4 15:43:37 2018 +0200 Some minor rearranging. commit 5a4133e96087bd783698b37495cbca16d69dbe7f Author: Alan Garny Date: Wed Jul 4 14:14:08 2018 +0200 Make sure that our documentation is built once the Sphinx script has been patched (#1544). commit 8c393259d7d6822c76121a158643c534827cab5a Author: Alan Garny Date: Wed Jul 4 13:44:39 2018 +0200 Some minor cleaning up (#1544). commit 0c179f5673a45ee281624b3f489537d4c71f0f83 Merge: d8a9d5710 822c8fe29 Author: Alan Garny Date: Wed Jul 4 13:41:47 2018 +0200 Merge remote-tracking branch '\''opencor/master'\'' into issue1544 commit 822c8fe29b584590c84f5395cb6cfaff9f629538 Merge: ddbf00b1c d1633bb20 Author: Alan Garny Date: Wed Jul 4 13:41:04 2018 +0200 Some minor cleaning up. commit d1633bb2073aac8fcaefcea553489c76aac23c12 Author: Alan Garny Date: Wed Jul 4 13:25:08 2018 +0200 Some minor cleaning up. commit d8a9d571071f7f9a8035938636930d46faf3b1b9 Merge: 36c40bdd4 ddbf00b1c Author: Alan Garny Date: Wed Jul 4 10:56:49 2018 +0200 Merge branch '\''master'\'' into issue1544. commit ddbf00b1c90b08725e97ec597ef37693f8a22c57 Merge: cae839669 9d83c435b Author: Alan Garny Date: Wed Jul 4 10:55:46 2018 +0200 Windows: fixed our VBScript file. commit 9d83c435b896c6ce5fdc904fd20ac31d89f93350 Author: Alan Garny Date: Wed Jul 4 10:25:24 2018 +0200 Windows: fixed our VBScript file. commit 36c40bdd438ddae49f0275c1f0515fe03339665c Merge: b60e7268a cae839669 Author: Alan Garny Date: Wed Jul 4 09:35:05 2018 +0200 Merge branch '\''master'\'' into issue1544. commit cae839669e51cf3120dbc048c6270546b9b22519 Merge: 8be1d28f6 c9eb5e19f Author: Alan Garny Date: Wed Jul 4 09:33:24 2018 +0200 Simulation Experiment view: fixed some issues with manually added graphs and graphs associated with another file (closes #1716). commit c9eb5e19fe13e1b1c8fd72b74bdf6550c462fcf7 Author: Alan Garny Date: Wed Jul 4 09:17:59 2018 +0200 Slight update to our downloads page (#1716). commit 71eef2df00a2f8a8486756b5faccdb1edc67527a Author: Alan Garny Date: Wed Jul 4 09:15:31 2018 +0200 Simulation Experiment view: properly handle the Model value of a given graph (#1716). commit ba8f4ef2fc0fbffbc81621caa643b5bb17bf6854 Author: David Brooks Date: Wed Jul 4 14:33:36 2018 +1200 Python: fixes from merging master in commit a6063de. commit a90a36675e29eaa30b0abab34284254ba36201a6 Author: Alan Garny Date: Tue Jul 3 18:06:36 2018 +0200 Simulation Experiment view: update the legend'\''s width if we change a graph'\''s symbol (#1716). commit f73fd84ff1657280926b6a36c15223dd5f9d84fc Author: Alan Garny Date: Tue Jul 3 15:23:30 2018 +0200 Simulation Experiment view: automatically update the title of a graph, if it is/was empty and it has a new Y value (#1716). commit 165e2fce879a539f58faced99c7427ecd5ca9ae8 Author: Alan Garny Date: Tue Jul 3 14:54:45 2018 +0200 Simulation Experiment view: automatically update the title of a graph, if it is/was empty and it has a new Y value (#1716). commit dc3121ef6f4ccda8b26e087a9ff6fc255744af14 Author: Alan Garny Date: Tue Jul 3 13:47:40 2018 +0200 Some minor cleaning up. commit bfc6ab495b882ac4475732ac069a0b7b689a0de5 Author: Alan Garny Date: Tue Jul 3 13:47:24 2018 +0200 Simulation Experiment view: cycle through colours when manually adding a graph (#1716). commit 41627fa14a8a20b9e53f44bf903e05b80f70d0c9 Author: Alan Garny Date: Tue Jul 3 11:38:37 2018 +0200 Some minor cleaning up. commit b60e7268a6bc230edc67528310d54c84b8b120f6 Author: Alan Garny Date: Tue Jul 3 08:37:02 2018 +0200 Documentation: prevent a warning about a .rst file not being used (#1544). Indeed, this is a README.rst file, so just for our own record and not meant to be used to generate the documentation. commit 306ac2c6576f49be064ab9d662fbb3c165d40939 Merge: 5b82409f5 8be1d28f6 Author: Alan Garny Date: Tue Jul 3 08:22:13 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 8be1d28f64803efaf39576965ab0db1800291a32 Merge: c117da854 4d54062d9 Author: Alan Garny Date: Tue Jul 3 08:19:50 2018 +0200 Some minor cleaning up. commit 4d54062d9f4541ff53c1af15a2f2e153b49b4f3a Author: Alan Garny Date: Tue Jul 3 08:04:58 2018 +0200 Some minor cleaning up. commit c117da854ab8cc23c87547fdc4caaea04749b0e4 Merge: 124330846 8f35939c1 Author: Alan Garny Date: Tue Jul 3 07:53:06 2018 +0200 Python: make sure the path to our Python is updated in scripts. commit 8f35939c1edd3a03dd75b58b75710cf4a65040cd Author: David Brooks Date: Tue Jul 3 17:18:15 2018 +1200 Python: new pre-compiled packages for Windows with DLLs also in `./bin`. commit 03fe407be19f4ec0963c23551bd91fffa4848c5b Author: David Brooks Date: Tue Jul 3 14:12:41 2018 +1200 Python: make sure script is copied when CMake is run. commit 73481341579c18e2aee12f0fd449cc56d77e736b Author: David Brooks Date: Tue Jul 3 13:41:48 2018 +1200 Python: copy the `set_python_path` script during the Python plugin'\''s build, before any dependent plugins try to run it. commit 05da2b572999769c57e5020f8d3bb662063d5a1a Author: David Brooks Date: Tue Jul 3 13:41:23 2018 +1200 Python: copy the `set_python_path` script during the Python plugin'\''s build, before any dependent plugins try to run it. commit a6063de31ff28e01b4544ff3299a97ea85efba8e Merge: 024d79da8 124330846 Author: David Brooks Date: Tue Jul 3 13:00:05 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 024917384be8b897dfde04906837080a340d4bca Author: David Brooks Date: Tue Jul 3 12:57:45 2018 +1200 Python: make sure the path to our Python is updated in scripts. commit 024d79da8011e4651d97d8ff83e64575ca5ebe12 Author: David Brooks Date: Tue Jul 3 12:52:02 2018 +1200 Python: get `--update-path` option working in `set_python_path.py`. commit 5b82409f58116ebd04e47d33bab911b190ac7146 Author: Alan Garny Date: Mon Jul 2 22:04:49 2018 +0200 Make sure that we refer to our local copy of the user/developer documentation (#1544). commit 8b6f38fca5c288aa608734be04a10c02ed70e1b0 Author: Alan Garny Date: Mon Jul 2 22:02:30 2018 +0200 Copy our "base" documentation to the build directory (#1544). commit ea8cef10392b005b2005b7e326568c36e5cedcbf Author: Alan Garny Date: Mon Jul 2 22:01:26 2018 +0200 Make sure that we refer to our local copy of the user/developer documentation (#1544). commit d402749c23b9a725b73aed65f305f36e4f2cf0af Author: Alan Garny Date: Mon Jul 2 19:04:27 2018 +0200 Build both the user and developer documentations (#1544). commit 8949c6f24321fc6866a37f6aeebe88b188ce182c Author: Alan Garny Date: Mon Jul 2 15:08:23 2018 +0200 Add (and build, in theory) the user and developer documentations (#1544). commit 642d36e52590d7ed570d7f925f4a5aba5a50093b Author: Alan Garny Date: Mon Jul 2 14:49:13 2018 +0200 CMake: require at least CMake 3.11 (#1544). Needed for the `FetchContent` module. commit 44ca4ae071ecd4a69bbb1248ef3e16c318f9ed0d Author: Alan Garny Date: Mon Jul 2 14:29:45 2018 +0200 Revert "Get `cleanll[.bat]` to remove `doc/developer` and `doc/user` (#1544)." This reverts commit 37092d57cddfb8c7dd071f1818a1524ee8c11e12. commit db5a1fd67827f91ada63996208bbd2504a994152 Author: Alan Garny Date: Mon Jul 2 14:29:39 2018 +0200 Revert "Get `cleanll[.bat]` to remove `doc/developer` and `doc/user` (#1544)." This reverts commit ef742763675aaea4fdf9d08c13df94bc0e5f0d00. commit ef742763675aaea4fdf9d08c13df94bc0e5f0d00 Author: Alan Garny Date: Mon Jul 2 13:51:27 2018 +0200 Get `cleanll[.bat]` to remove `doc/developer` and `doc/user` (#1544). commit 37092d57cddfb8c7dd071f1818a1524ee8c11e12 Author: Alan Garny Date: Mon Jul 2 13:38:03 2018 +0200 Get `cleanll[.bat]` to remove `doc/developer` and `doc/user` (#1544). commit 07fd5ba88e00c3a3a244f2386809424c17eb2831 Author: Alan Garny Date: Mon Jul 2 10:46:09 2018 +0200 Removed our documentation submodules (#1544). commit 67098034314b92e6e2648a9ed41cf0c532f6a092 Author: Alan Garny Date: Mon Jul 2 10:45:33 2018 +0200 Removed our documentation submodules (#1544). commit 02f2cbbc183c7705879f88baad19bff40f575092 Merge: 3fe7fd1da 124330846 Author: Alan Garny Date: Mon Jul 2 10:25:27 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 12433084648345082bfc9db060b4112665814115 Author: Alan Garny Date: Mon Jul 2 10:23:43 2018 +0200 Some minor cleaning up. commit 3fe7fd1daa5fffaaa760cd29abced8380361c28c Merge: 0534805d8 73f5c95e3 Author: Alan Garny Date: Sat Jun 30 18:57:27 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 73f5c95e31f14d2599e7f2c1c5dc59b071baedaf Merge: dfd7fe0c7 d912e4805 Author: Alan Garny Date: Sat Jun 30 18:55:44 2018 +0200 Cleaning up. commit d912e48055d19f5984169e37af4c966264a037e6 Author: Alan Garny Date: Sat Jun 30 18:05:56 2018 +0200 Some minor cleaning up. commit 6618cb7ed43101d95f9586f4490d776d908a2e06 Author: Alan Garny Date: Sat Jun 30 15:59:35 2018 +0200 Some minor cleaning up. commit 63f3c0817af1262c53515402590cdbdac3f6a341 Author: Alan Garny Date: Sat Jun 30 15:35:03 2018 +0200 Some minor cleaning up. commit 06f4fe131eafa52e70dbd3a841a0d321d1a83173 Author: Alan Garny Date: Sat Jun 30 15:33:56 2018 +0200 Some minor cleaning up. commit d73e6a308b1ceca3be86c5166c8fb0bade7c19bd Author: Alan Garny Date: Sat Jun 30 15:00:02 2018 +0200 CellML support: reworked `CellmlFile::fileVersion()`. The idea is that if the given file is managed, then we directly return its CellML version while, if it’s not managed, we try to load it and return its version. commit b4a8896ff69241832aba7e84097ef1762b7216cf Author: Alan Garny Date: Sat Jun 30 14:44:10 2018 +0200 Some minor cleaning up. commit 2f1ccadffd135f9e20bace415b84bf610c921351 Author: Alan Garny Date: Sat Jun 30 14:00:56 2018 +0200 Some minor cleaning up. commit 745ea6aa0d977305c3778ddfc6bca10783de18a5 Author: Alan Garny Date: Sat Jun 30 14:00:39 2018 +0200 Some minor cleaning up. commit f28b8acad5ae2973bff964f4ac933cdf4ccb0842 Author: Alan Garny Date: Sat Jun 30 13:45:00 2018 +0200 Some minor cleaning up. commit e067d6d0616ebef65e1d0223cac26237711b5921 Author: Alan Garny Date: Sat Jun 30 13:34:27 2018 +0200 Some minor cleaning up. commit 194474f28699d111b1b1dc0fd232d94d0e5e2884 Author: Alan Garny Date: Sat Jun 30 10:24:20 2018 +0200 Replaced `readFileContentsFromFile()` and `readFileContentsFromURL()` with `readFile()`. commit e68ebce4edd62a9bce2169aaeb9f0814f1ebee07 Author: Alan Garny Date: Sat Jun 30 10:20:22 2018 +0200 Core CLI: some minor reorganisation of code. commit 94d48989d1e772dc3ee11f5983619e938a390b60 Author: Alan Garny Date: Sat Jun 30 10:15:50 2018 +0200 Core CLI: some minor reorganisation of code. commit 324a96d20c1ab01e951d9393dd79570153d4a8b3 Author: Alan Garny Date: Sat Jun 30 10:12:26 2018 +0200 PMR Workspaces window: make sure that we are dealing with a CellML 1.0/1.1 file. commit be36451512176f4b404fe2bde4e94279c8dad4f9 Author: Alan Garny Date: Sat Jun 30 08:57:51 2018 +0200 Replaced `readFileContentsFromUrlWithBusyWidget()` with `readFileWithBusyWidget()`. commit bb806624f7aa56e91c8f0f45db2e382023e6ae99 Author: Alan Garny Date: Fri Jun 29 23:17:21 2018 +0200 Replaced `writeFileContentsToFile()` with `writeFile()`. commit dfd7fe0c78ea0a79561172d92bcf07c6184b10d7 Merge: b38242cbc 93112937f Author: Alan Garny Date: Fri Jun 29 22:58:44 2018 +0200 CellML/SED-ML Editing views: disable the tools if the current file doesn'\''t have an editor. commit 93112937f5d98860c1a5f8615f0f46feec63a98b Author: Alan Garny Date: Fri Jun 29 22:39:29 2018 +0200 CellML/SED-ML Editing views: disable the tools if the current file doesn'\''t have an editor. commit b38242cbc8b3a78405db73cf034781ce049ed2de Merge: fa9d85958 f1061b7c9 Author: Alan Garny Date: Fri Jun 29 22:33:24 2018 +0200 Make sure that some views only deal with CellML 1.0/1.1 files. commit f1061b7c986627b3d351bbf324c4ef7a8de00831 Author: Alan Garny Date: Fri Jun 29 18:12:22 2018 +0200 Simulation Experiment view: make sure that we are dealing with a CellML 1.0/1.1 file. commit a3cdf7de3dfc2fb7a90a19297aa5946386999a11 Author: Alan Garny Date: Fri Jun 29 18:11:57 2018 +0200 Raw CellML view: make sure that we are dealing with a CellML 1.0/1.1 file. commit 82ef1e5f25c8149271d4f7cad6fe02eb0bd9f7e2 Author: Alan Garny Date: Fri Jun 29 18:11:41 2018 +0200 CellML Annotation view: make sure that we are dealing with a CellML 1.0/1.1 file. commit 0534805d822099394169e8cc64d207985470ffc2 Merge: cc2fbd7fc fa9d85958 Author: Alan Garny Date: Fri Jun 29 14:32:09 2018 +0200 Merge branch '\''master'\'' into issue1544. commit fa9d859582966d0385b9381816773518d88cf83d Merge: c8ed1ed53 7203acd4c Author: Alan Garny Date: Fri Jun 29 14:23:42 2018 +0200 Solvers: reference CVODE rather than CVODES (closes #1711). The Windows build failed due to `clcache` crashing. The build was then manually restarted and it passed (see http://autotest.bioeng.auckland.ac.nz/jenkins/job/OpenCOR_Windows/398/). commit 7203acd4cf1ee4e3bc820a7e22250790d0be8ed8 Author: Alan Garny Date: Fri Jun 29 13:29:47 2018 +0200 Slight updates to our downloads pages (#1711). commit 6375ad1da20967acebe3d7a0c8fe49f995812683 Author: Alan Garny Date: Fri Jun 29 13:25:46 2018 +0200 Solvers: reference CVODE rather than CVODES (#1711). commit cc2fbd7fce8f05775acf7475fb86e577ca009ad5 Merge: 85a4f1809 c8ed1ed53 Author: Alan Garny Date: Wed Jun 27 20:28:51 2018 +0200 Merge branch '\''master'\'' into issue1544. commit c8ed1ed53b2d9109875db9b2227190e1c81b5f3f Author: Alan Garny Date: Wed Jun 27 20:27:55 2018 +0200 Some minor cleaning up. commit 85a4f180926d05e362a46d4c9da3aabf7465cd22 Merge: ab8c6d42d 052b242b2 Author: Alan Garny Date: Wed Jun 27 18:20:29 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 052b242b2d8aead3e47d33b85848deaca93a21f1 Author: Alan Garny Date: Wed Jun 27 18:12:02 2018 +0200 Some minor cleaning up. commit 25c0759e34b138467fffac4ce9217207ed135ceb Merge: 1816234c5 bb54af227 Author: Alan Garny Date: Wed Jun 27 16:06:32 2018 +0200 New snapshot. commit bb54af2276b4fa0afe25a7d8e4240c6170093b16 Author: Alan Garny Date: Wed Jun 27 15:51:54 2018 +0200 New snapshot. commit ab8c6d42d0c2c23f0230e96741b9d3182faedb08 Author: Alan Garny Date: Wed Jun 27 15:21:13 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 1816234c5936a75f92a0c652baf2fb5268194a20 Merge: aa6d0933c 980a83684 Author: Alan Garny Date: Wed Jun 27 15:17:40 2018 +0200 2018-06-15 snapshot: fixed a regression issue with the wrong view being potentially shown when switching between files in different modes/views (closes #1699). commit 980a83684c62a3b9106f82143f1bbeb2323bf522 Author: Alan Garny Date: Wed Jun 27 15:00:36 2018 +0200 Slight update to our downloads page (#1699). commit c2287c227f610077c5ed61a2a9d2cc07a731be5c Author: Alan Garny Date: Wed Jun 27 14:58:37 2018 +0200 2018-06-15 snapshot: fixed a regression issue with the wrong view being potentially shown when switching between files in different modes/views (#1699). This effectively reverts commit d69439e, which I thought was fine, but clearly wasn’t (see https://github.com/opencor/opencor/issues/1699#issuecomment-397896523). commit 49c9a7836ad0989d0dbe26f0877057b0b52700b2 Author: Alan Garny Date: Wed Jun 27 14:10:42 2018 +0200 CellML Text view: make sure that only CellML 1.0/1.1 files are accepted. commit 10d0eced146b153ffef48ef44b20fa92fdabf6ba Merge: 6cc7f088f aa6d0933c Author: Alan Garny Date: Wed Jun 27 10:27:19 2018 +0200 Merge branch '\''master'\'' into issue1544. commit aa6d0933c6edbc986577080238d1d15e70032ae2 Merge: 4a419e184 1ce54f5aa Author: Alan Garny Date: Wed Jun 27 10:25:59 2018 +0200 General: moved our API plugins to the third-party category and, in some cases, renamed them (closes #1707). commit 1ce54f5aa683d9263e5fad2268df80e6e1854bec Author: Alan Garny Date: Wed Jun 27 09:32:55 2018 +0200 Slight update to our downloads page (#1707). commit f4027aa72e6379aa87f090ea025a215a5f9f3e7c Author: Alan Garny Date: Wed Jun 27 09:26:06 2018 +0200 CellML Text view: only provide extra information upon validation when using the CellML API. commit de825526a527070d7847895ee3b1740f58bb8b1b Author: Alan Garny Date: Wed Jun 27 09:24:39 2018 +0200 Raw CellML view: only provide extra information upon validation when using the CellML API. commit 2f66e75065fb6fdf162f90342be7907daed3b6ba Author: Alan Garny Date: Wed Jun 27 09:23:32 2018 +0200 Raw CellML view: only provide extra information upon validation when using the CellML API. commit 2e7ad8fbb048923389400ec0d53d251ed3eab90c Author: Alan Garny Date: Wed Jun 27 09:01:39 2018 +0200 Some minor cleaning up. commit b9d7391404eca3da50ce58055964fd5040930894 Author: Alan Garny Date: Wed Jun 27 08:49:52 2018 +0200 Some minor cleaning up. commit 9a9f8c391eaefed95f1d7fe51f58ba54cb49b91a Author: Alan Garny Date: Wed Jun 27 08:40:48 2018 +0200 Got rid of the API plugin category (#1707). commit c0c2c2e28b7237f22169b10b51ad10dfa4235d7c Author: Alan Garny Date: Wed Jun 27 08:34:15 2018 +0200 libSBML and libSEDML plugins: moved them to the third-party category and renamed them (#1707). commit e6d16f9a0db20afea802ae37326334422449d310 Author: Alan Garny Date: Tue Jun 26 23:28:12 2018 +0200 libSBML, libNuML and libSEDML plugins: moved them to the third-party category and renamed them (#1707). commit 0c19f836f55958db9e146d20ae030d3a54b1986b Author: Alan Garny Date: Tue Jun 26 23:16:31 2018 +0200 libSBML, libNuML and libSEDML plugins: moved them to the third-party category and renamed them (#1707). commit 0122e19198cf6776129e2d6ff2f1e8db962b729f Author: Alan Garny Date: Tue Jun 26 22:27:53 2018 +0200 CellML API plugin: moved it to the third-party category (#1707). commit ad122eac9c27706d150e20fbce3fd102cfecb32d Author: Alan Garny Date: Tue Jun 26 22:25:57 2018 +0200 CellML API plugin: moved it to the third-party category (#1707). commit 6d1786d7c2479c1cc52ea0bd88af114b018b7ffa Author: Alan Garny Date: Tue Jun 26 22:14:22 2018 +0200 BioSignalML plugin: moving it to the third-party category (#1707). commit abb443d64607aeda2422c41b63623a3478b833a0 Author: Alan Garny Date: Tue Jun 26 22:12:11 2018 +0200 Revert "BioSignalML plugin: moving it to the third-party category (#1707)." This reverts commit 1b48f427a95b69757b248dda4fb44fbf43502009. commit 1b48f427a95b69757b248dda4fb44fbf43502009 Author: Alan Garny Date: Tue Jun 26 21:49:29 2018 +0200 BioSignalML plugin: moving it to the third-party category (#1707). commit 6cc7f088fae0fd861ea7da55e3875913687af50d Merge: bf6495aee 4a419e184 Author: Alan Garny Date: Tue Jun 26 16:29:27 2018 +0200 Merge branch '\''master'\'' into issue1544. commit 4a419e184e0e417bb2a6e19308b697752cbc6c5a Merge: b8471aba1 36f598e39 Author: Alan Garny Date: Tue Jun 26 16:26:43 2018 +0200 Various cleaning up. commit 36f598e39f012a667404ae7037024ec8415094c5 Author: Alan Garny Date: Tue Jun 26 15:39:58 2018 +0200 CellML Text view: added checks for the error column in our tests. commit 45c64dba658868b9e88ff102ff652bdb73d9f220 Author: Alan Garny Date: Tue Jun 26 15:18:59 2018 +0200 CellML Text view: some minor cleaning up. commit ecdf5318119f68c6f73d6b9716e1b12f7f8b30f0 Author: Alan Garny Date: Tue Jun 26 15:17:49 2018 +0200 CellML Text view: added warning column numbers. commit bce55673a0461b02e8672daf9a991b662aa5cba0 Author: Alan Garny Date: Tue Jun 26 15:10:53 2018 +0200 CellML Text view: some minor rearranging of code. commit 6ae438097e495b0b9a11a5869c2c558071045012 Author: Alan Garny Date: Tue Jun 26 15:01:28 2018 +0200 CellML Text view: now keep track of the column of a conversion warning. commit 9728bf928c6c4873355052c3c18b8ee11b324271 Author: Alan Garny Date: Tue Jun 26 14:54:39 2018 +0200 CellML Text view: make sure that only CellML 1.0/1.1 files are accepted. commit e3cd5b97ee5b776c77f858392b3080d09d82b381 Author: Alan Garny Date: Tue Jun 26 14:52:31 2018 +0200 Simulation Experiment view: some minor cleaning up. commit 4cdbc064d6794be58bb0fe1fba97080edbc60954 Author: Alan Garny Date: Tue Jun 26 14:27:13 2018 +0200 CellML support: removed our (empty) CellML 1.1 export code. commit a6dd632585276d033d2c3fc11c5644d32e27f997 Author: Alan Garny Date: Tue Jun 26 14:24:29 2018 +0200 CellML support: reworked some of our code for retrieving the CellML version. commit 783853bf64d48f49839378268c6f7a1ce83bb46d Author: Alan Garny Date: Tue Jun 26 14:14:47 2018 +0200 CellML support: simplified our CellML export code. commit 1977cf6d299557d26780a03a868621a33f221450 Author: Alan Garny Date: Tue Jun 26 14:12:24 2018 +0200 CellML support: some minor cleaning up. commit 9bedaf5a0c3f8261d69c34460318f0aad747db34 Author: Alan Garny Date: Tue Jun 26 14:11:48 2018 +0200 CellML support: removed our (empty) CellML 1.1 exporter code. commit e50a1bb235a403a7eacb19348b217444d47d8948 Author: Alan Garny Date: Tue Jun 26 14:09:29 2018 +0200 CellML tools: slightly reorganised our tests. commit 86a1abd608705c81cac408b6058a542de8d8996b Author: Alan Garny Date: Tue Jun 26 14:08:18 2018 +0200 CellML tools: don'\''t bother with exporting to CellML 1.1. Indeed, with CellML 2.0 coming up, we are unlikely to ever want to break a CellML 1.0 model down to several CellML 1.1 files. commit 50cf43fd0fe74f15973030ef20b6eb3702fe31a8 Author: Alan Garny Date: Tue Jun 26 14:07:33 2018 +0200 CellML tools: don'\''t bother with exporting to CellML 1.1. Indeed, with CellML 2.0 coming up, we are unlikely to ever want to break a CellML 1.0 model down to several CellML 1.1 files. commit b8471aba10243bbce7b9d4cd34a5c76c36bd1d1d Merge: f9365e26c 52fee38c9 Author: Alan Garny Date: Mon Jun 25 10:07:13 2018 +0200 QScintilla: upgraded to version 2.10.6 (closes #1704). commit 52fee38c973eddff8aff10ea61ece055f421dde0 Author: Alan Garny Date: Mon Jun 25 09:51:28 2018 +0200 Slight update to our downloads page (#1704). commit 82943623ce1a1fd1fb82a7d4b04fba15d1646df2 Author: Alan Garny Date: Mon Jun 25 09:49:44 2018 +0200 Stop building only QScintilla (#1704). commit 99f08a895e72a793fc81496345ab3bdae95b19bb Author: Alan Garny Date: Mon Jun 25 09:49:22 2018 +0200 QScintilla: binaries for version 2.10.6 (#1704). commit dc103e68c2d31117b0430d2d880d46ab94fcee2b Author: Alan Garny Date: Mon Jun 25 09:33:14 2018 +0200 QScintilla: upgraded to version 2.10.6 (#1704). commit 054d40eb547a8bfae27b0e0d1276048110a66ebf Author: Alan Garny Date: Mon Jun 25 09:24:09 2018 +0200 Only build QScintilla (#1704). commit 5a073a9ea38685601b838f7f67eba5a31767dd6f Merge: 403109d67 f9365e26c Author: David Brooks Date: Fri Jun 22 15:22:25 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 403109d6721da6be9f0c14e482fe4ad71ac2e91f Author: David Brooks Date: Fri Jun 22 14:50:23 2018 +1200 Python: update notes on running Jupyter. commit af748fa45b51ad2a8e5cd271a84f7ef6bf322cfb Author: David Brooks Date: Fri Jun 22 14:48:26 2018 +1200 Python: add scripts to directly run a Jupyter notebook server. commit 3f920c5d01a3ed33a32aca6fb0b624fb27e5849a Author: David Brooks Date: Fri Jun 22 14:47:17 2018 +1200 Python: tidy scripts used to start Jupyter. commit 08d6d13f9597c733ea46c50e419d4051ca47a655 Author: David Brooks Date: Fri Jun 22 14:35:34 2018 +1200 Core: don'\''t show a busy widget if we are not in GUI mode. commit 4bf4b06b6e1f57e82ea9b0866c7dc31c98ad29b3 Author: David Brooks Date: Fri Jun 22 14:34:40 2018 +1200 Core: open a remote file after downloading and creating it. commit 6a8542db79a189424c5d0ae549cdd3cba87f168c Author: David Brooks Date: Fri Jun 22 14:33:31 2018 +1200 Python: only load SED-ML data if we have it. commit dad2f810f6d0e51f60a2a927bdba15fd3ebc5d98 Author: David Brooks Date: Tue Jun 19 16:55:20 2018 +1200 Python: update pre-built packages. commit 6d2ccaa3f905132e6a793923df9827f7379ac951 Author: David Brooks Date: Tue Jun 19 16:54:49 2018 +1200 Python: don'\''t bundle Jupyter.vbs under Windows as it is a WIP. commit fc8023038adb5652b4adac62dd38e982f7840c59 Author: David Brooks Date: Tue Jun 19 16:53:25 2018 +1200 Fix typos. commit 63767ec9bce8478e4c47ebc69f82fa5b825144ec Merge: 955c111f8 e280601e3 Author: David Brooks Date: Tue Jun 19 11:59:44 2018 +1200 Merge branch '\''pythonplugin'\'' of git://github.com/dbrnz/opencor into pythonplugin commit 955c111f895463b839d5212dfee3a4c26f8b0f40 Author: David Brooks Date: Tue Jun 19 11:55:39 2018 +1200 Python: use our version of pip that creates `*-script.py` files for Python launchers under Windows. We also don'\''t use wheel, so don'\''t install it. commit 68c03b248304f38db1ac60a4780da61a1558006e Author: David Brooks Date: Tue Jun 19 11:52:36 2018 +1200 Python: tidy CMake code. commit 4852a345c0ec40ab6a69138fa19ac5f2d526a86a Author: David Brooks Date: Tue Jun 19 11:49:21 2018 +1200 Python: get Jupyter running under Windows. commit 4672d0227f6af5f97697d4a434d727b70c6558f8 Author: David Brooks Date: Tue Jun 19 11:46:06 2018 +1200 Python: escape backslashes when passing strings to Jupyter kernel. commit f9365e26cdb9f8e0459ae58a5efafc52a9b1dd29 Merge: 09d33f3f1 518aeff6a Author: Alan Garny Date: Fri Jun 15 18:09:32 2018 +1200 Simulation Experiment view: fixed some GUI glitches (closes #1696). commit 518aeff6ad7604d8c7b8f37a3bb98298e8b7ba87 Author: Alan Garny Date: Fri Jun 15 16:28:18 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit c3dc323e4ecfad9d4610c315a246deec5215c80c Author: Alan Garny Date: Fri Jun 15 16:26:01 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit d32ff83c4a8b0a78165aaa7177fc2304683105b8 Author: Alan Garny Date: Fri Jun 15 16:19:10 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit c3a1e3363aece9c502fb16183643dbc29da8d21f Author: Alan Garny Date: Fri Jun 15 16:13:59 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit e08d503815d3c14c7285553ab7ad05db6c458f30 Author: Alan Garny Date: Fri Jun 15 16:07:10 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit e47a538fa38ac21a9b05647f7cab103bb46a77ca Author: Alan Garny Date: Fri Jun 15 16:00:24 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit 2ecd172a2850f4f07842e012bc07c15b02fb2695 Author: Alan Garny Date: Fri Jun 15 15:56:42 2018 +1200 Slight update to our downloads page (#1696). commit 6dd09a29415fa4abad9e32d73f9f58fb169f5223 Author: Alan Garny Date: Fri Jun 15 15:53:09 2018 +1200 Simulation Experiment view: fixed some GUI glitches (#1696). commit 09d33f3f1cba2692a2d0d9d294dfb3d1cbed7c14 Merge: d48fa37f4 53e9683da Author: Alan Garny Date: Fri Jun 15 15:44:55 2018 +1200 Simulation Experiment view: fixed an issue with the Y axis being doubled in a very specific case (closes #1683). commit 53e9683da533476e8373e5edc69c6ab947406c30 Author: Alan Garny Date: Fri Jun 15 15:27:15 2018 +1200 Slight update to our downloads page (#1683). commit e280601e3586091b99f438d385071d08fc8edc14 Author: David Brooks Date: Fri Jun 15 13:12:54 2018 +1200 Python: raise an exception if a simulation has an invalid runtime (#1200). commit 3e1362df2042f0062a4af2a01ab22728794b0f2e Author: David Brooks Date: Fri Jun 15 11:18:57 2018 +1200 Python: use release tags to distinguish production (OpenCOR 0.6) and development pre-built packages. commit b126cf40c3dd4c143b2abc37f4dbb0a455884639 Author: David Brooks Date: Fri Jun 15 11:17:28 2018 +1200 Python: we do need entire contents of `bin` under Windows. commit d69439e6238050e2e6975372f7fe1d29ba7d5398 Author: Alan Garny Date: Fri Jun 15 10:14:05 2018 +1200 Central widget: some minor cleaning up. Indeed, we don’t need our setTabBarCurrentIndex() method since CentralWidget::updateGui() now checks whether the state in which we are and will exit straightaway if we are not idling. commit d11bceb70748d2b2ba90ce3cc012180b29898ceb Author: Alan Garny Date: Thu Jun 14 18:02:28 2018 +1200 Some minor cleaning up. commit 945b043e7bd2d4431056a4f6c4b1d457bc00683a Author: Alan Garny Date: Thu Jun 14 15:53:27 2018 +1200 Revert "Central widget: make sure that our views are hidden before actually showing the one we are after (#1683)." This reverts commit 23b6d13b07e6d01aa2e1a46b110b8a7d98779006. Indeed, we shouldn’t have to hide the views tabs first before showing the one we are after. It’s just that our Simulation Experiment view is such that one of its side effects is a GUI glitch that shows both the Editing and the Simulation views tabs for a split second when switching files, with the first one using the Simulation Experiment view and the second using, say, the CellML Text view. commit f33cf6b04412ab78a1f11043a448cf943df67721 Merge: f9350a61d b45c88de3 Author: David Brooks Date: Thu Jun 14 15:06:52 2018 +1200 Merge branch '\''pythonplugin'\'' of git://github.com/dbrnz/opencor into pythonplugin commit f9350a61dd965df0037b06549fe8e0b4d163bd90 Author: David Brooks Date: Thu Jun 14 15:06:15 2018 +1200 Core: export CentralWidget class for Windows. commit b45c88de3b598eef7cbeb9d395ce02c2fc988202 Author: David Brooks Date: Thu Jun 14 14:40:52 2018 +1200 Python: update PythonPackages package for macOS and Linux. commit f55ced1573e1977fa8709e715398f50e5394905c Author: Alan Garny Date: Thu Jun 14 14:35:10 2018 +1200 Some minor cleaning up. commit 96ec89de4494964d9723d434da7c8fe70034c7c5 Merge: 621daddf0 d48fa37f4 Author: David Brooks Date: Thu Jun 14 14:04:09 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 621daddf003287ef08b6a2c8a15c6933f331cc6f Author: David Brooks Date: Thu Jun 14 13:49:47 2018 +1200 Python: make sure Jupyter %matplotlib uses correct backend (see jupyter/notebook#3684). commit 23b6d13b07e6d01aa2e1a46b110b8a7d98779006 Author: Alan Garny Date: Thu Jun 14 11:49:56 2018 +1200 Central widget: make sure that our views are hidden before actually showing the one we are after (#1683). commit da23fcd2d41169236717cbc348a9a9d99c76105e Author: Alan Garny Date: Thu Jun 14 11:42:49 2018 +1200 Some minor cleaning up. commit 7cedf82320ca1baf22f50643d74038240041ac0a Merge: 7e74d714b d48fa37f4 Author: Alan Garny Date: Thu Jun 14 11:05:10 2018 +1200 Merge branch '\''master'\'' into issue1683. commit d48fa37f496916dcd3716dae41869780a2dde7b2 Author: Alan Garny Date: Thu Jun 14 11:03:55 2018 +1200 Graph Panel widget: make sure we have a 3-pixel-wide marker on macOS. commit 0ea3fcd1baa3369edb280679b495df1f851a054e Author: David Brooks Date: Thu Jun 14 09:04:34 2018 +1200 Python: suppress warnings about location of script files. commit 2a7b1d3dba28af1ba6fd9f980abe6e8ba8b7804e Author: David Brooks Date: Thu Jun 14 08:54:49 2018 +1200 Python: use our latest versions of matplotlib and IPython, making sure our patches are applied *after* all standard packages have been installed. commit 31500eb128712128c1d02da8567d1aa139903f2b Author: David Brooks Date: Wed Jun 13 20:59:21 2018 +1200 Python: make sure we use the notebook backend for matplotlib. commit c69a9aa5b7436e2a8c931c0b0d17c107be720e2f Author: David Brooks Date: Wed Jun 13 19:05:50 2018 +1200 Python: our (patched) matplotlib now determines the backend to use from IPython'\''s GUI setting. commit 7e74d714ba98c809667e3ccdf38514d96f150d78 Merge: 9f7c9645e 9959f61fb Author: Alan Garny Date: Wed Jun 13 17:57:31 2018 +1200 Merge branch '\''master'\'' into issue1683. commit 9959f61fb6a004a21bbf78f1a7d3c970a5d0417e Merge: 1d8fcec69 519230053 Author: Alan Garny Date: Wed Jun 13 17:56:39 2018 +1200 Central widget: some work to help with the tab bar shifting when switching tabs (#1691). commit 519230053108d89c3a4387e58087b6f7325a72fd Author: Alan Garny Date: Wed Jun 13 17:39:03 2018 +1200 Reverted commit 9549fec (#1691). commit 26654ef0119f866f3788056f55a978aacde9aad7 Author: Alan Garny Date: Wed Jun 13 17:32:19 2018 +1200 Central widget: make sure the tool tip for our file tabs is correct (#1691). commit 9a0f8f478740a888ad87c965dab9653034fca412 Author: Alan Garny Date: Wed Jun 13 17:16:01 2018 +1200 Central widget: make sure the tool tip for our file tabs is correct (#1691). commit 9f7c9645ea6c5218de4ba0474b83551579bc47cf Merge: 1d4cd3e1a 1d8fcec69 Author: Alan Garny Date: Wed Jun 13 15:51:40 2018 +1200 Merge branch '\''master'\'' into issue1683. commit 1d8fcec69a020942f5db46637b28bdb8ec2e7ada Merge: a9c7d589f e74b172c9 Author: Alan Garny Date: Wed Jun 13 15:50:48 2018 +1200 Some minor cleaning up. commit e74b172c9ad2b0e6eab085d3bcd1cdbde43346fd Author: Alan Garny Date: Wed Jun 13 15:38:02 2018 +1200 Some minor cleaning up. commit 1d4cd3e1a43bb5a0419cb7e1840b332cc013dcac Merge: 821847a12 a9c7d589f Author: Alan Garny Date: Wed Jun 13 15:23:22 2018 +1200 Merge branch '\''master'\'' into issue1683. commit a9c7d589fbe8751a96c26f9b27c0c5859ed297a5 Merge: 282c554fe 9549fecef Author: Alan Garny Date: Wed Jun 13 15:21:36 2018 +1200 Central widget: fixed an issue with the tab bar shifting when switching tabs (closes #1691). commit 9549fecefdab0aa9d1b3f2e5b8b8879fee7dd28c Author: Alan Garny Date: Wed Jun 13 15:07:54 2018 +1200 Slight update to our downloads pages (#1691). commit 1693c6fe3c87c46618ae2de0f615d0c91a42ec93 Author: Alan Garny Date: Wed Jun 13 15:05:22 2018 +1200 Central widget: fixed an issue with the tab bar shifting when switching tabs (#1691). commit 95a30ab027de12cc4ca8674f74eb807dbbc4b9b3 Author: Alan Garny Date: Wed Jun 13 14:44:29 2018 +1200 Some minor cleaning up. No point in setting things if they haven’t changed. commit 9a9abd75517cc6bd864c0018aa4b4f513b10a93a Merge: e48720142 282c554fe Author: Alan Garny Date: Wed Jun 13 14:25:04 2018 +1200 Merge branch '\''master'\'' into issue1691. commit 282c554fe0edcc78575cc68d6de86e48bd7eb410 Author: Alan Garny Date: Wed Jun 13 14:20:47 2018 +1200 PMR Workspaces window: properly handle the showing of our custom context menu. commit e4872014211e653fe7b164ef44a54181fc5fecb8 Author: Alan Garny Date: Wed Jun 13 11:43:16 2018 +1200 Some minor cleaning up. commit 821847a12b087a3b82917da6de85a34dfaccf895 Merge: 44b6ec648 450ba7609 Author: Alan Garny Date: Tue Jun 12 15:13:17 2018 +1200 Merge branch '\''master'\'' into issue1683. commit 450ba760948b76f776acbe042ac81f315371ce17 Merge: a1c1bb06a 49e07ef58 Author: Alan Garny Date: Tue Jun 12 15:10:20 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH (closes #1688). commit 49e07ef58069fbd7228c5d23b2446702b1629f9e Author: Alan Garny Date: Tue Jun 12 14:51:20 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH (#1688). commit 42354b7e968aae567be62056b27da4f1b7e42434 Author: Alan Garny Date: Tue Jun 12 14:43:49 2018 +1200 Slight update to our downloads page (#1688). commit 31b982abe15755510e698a8fd7f0458c009e0cc7 Author: Alan Garny Date: Tue Jun 12 14:21:31 2018 +1200 General: we definitely need to (re)initialise our plugins path even when we have already done so for the CLI version of OpenCOR (#1688). Not to do so will result in the plugins not being found on Linux. commit b659fa1420010e13a707fe11640f3fac273e7c98 Author: Alan Garny Date: Tue Jun 12 14:15:15 2018 +1200 Revert "General: don'\''t rely on QCoreApplication::setLibraryPaths() to set the plugins directory (#1688)." This reverts commit 9a6da2f9cb6e1c4c42e3849f87b51be7715e215b. commit 9a6da2f9cb6e1c4c42e3849f87b51be7715e215b Author: Alan Garny Date: Tue Jun 12 13:41:29 2018 +1200 General: don'\''t rely on QCoreApplication::setLibraryPaths() to set the plugins directory (#1688). Indeed, with Qt 5.9.6, things are now broken on Linux!? So, now, we directly pass the plugins directory to our CLI application and GUI’s main window. commit b2042c2a676ac2a3181f4d82d55178e4ffc11375 Author: David Brooks Date: Tue Jun 12 12:59:12 2018 +1200 Linux: we need full paths to OpenCOR and Jupyter. commit b7e84f7cc4c862a5990312ad0bc6a7a8b07a259c Author: Alan Garny Date: Tue Jun 12 12:52:48 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH (#1688). commit dd22457227dbd8e20e3b5f522aaf7273c40dde8c Author: David Brooks Date: Tue Jun 12 12:51:43 2018 +1200 Plugins: we no longer use the EventLoopInterface so remove it. commit 9873d00d0878618902c5d008527dd0c42fef3a77 Author: Alan Garny Date: Tue Jun 12 11:34:38 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH (#1688). commit ce5620cac5c57b99e580e113c501a790ac802915 Author: Alan Garny Date: Tue Jun 12 11:25:09 2018 +1200 Some minor cleaning up. commit 913218e5389c519b530714d2e6ac668fad4ea4a0 Author: Alan Garny Date: Tue Jun 12 11:03:54 2018 +1200 Some minor cleaning up. commit 50bf431350fa4a10d5848fffed3b0082ed088e84 Author: David Brooks Date: Tue Jun 12 10:57:25 2018 +1200 Linux: tidy script. commit 2ca6435abcbf9056c6cdcaf72b5abf550ead5474 Author: David Brooks Date: Tue Jun 12 10:56:50 2018 +1200 macOS: use the full path to the OpenCOR executable when running it from its script. commit 7a5ebe9e34bc428ab9dfd7e8cc3c16d0a5ca1dfd Author: David Brooks Date: Tue Jun 12 10:55:04 2018 +1200 Python: set the full path to OpenCOR in the Jupyter server shell, not in OpenCOR. commit bfc1f92ec061d35a68a7b26a3e193bae17dc0212 Author: David Brooks Date: Mon Jun 11 22:48:11 2018 +1200 Put the OpenCOR application directory at the head of the system PATH so that the Jupyter notebook server can find OpenCOR. commit f53fd08361518d608863729b1ad881510c8bc62d Author: David Brooks Date: Mon Jun 11 22:46:17 2018 +1200 Python: don'\''t overwrite OpenCOR script with Jupyter'\''s... commit 7ddff0b574923b8cdf82f496cdb7fbf8a7b32250 Merge: 676498644 d87314f4b Author: David Brooks Date: Mon Jun 11 21:46:49 2018 +1200 Merge branch '\''pythonplugin'\'' of github.com:dbrnz/opencor into pythonplugin commit d87314f4b53de6829085e01ef8ca62af59c18ea1 Merge: c09a0efda a1c1bb06a Author: David Brooks Date: Mon Jun 11 21:44:30 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 676498644b6eee2bc0bcd1a9b6d44c807a406214 Author: David Brooks Date: Mon Jun 11 21:42:43 2018 +1200 Python: don'\''t try to update scripts we can'\''t access. commit 44b6ec64845a306ff439573a5779d898644de0ca Merge: 6d55e1327 a1c1bb06a Author: Alan Garny Date: Mon Jun 11 09:46:36 2018 +1200 Merge branch '\''master'\'' into issue1683. commit a1c1bb06afe41096824ddd2e6d9a3ee80aec1846 Author: Alan Garny Date: Mon Jun 11 09:45:23 2018 +1200 Editing view plugin: make sure we have an editor before checking if it should handle changes. commit 6d55e132784dccd663f3aa98a8034966d999e4cd Author: Alan Garny Date: Sun Jun 10 16:37:38 2018 +1200 Simulation Experiment view: fixes an issue with the Y axis being doubled in a given case (#1683). However, we now need to fix the issue that calling setUpdatesEnabled() on the current plot used to fix...! commit a7dcb8d8d5d69cad6c103b2f0ebe8f41186da293 Author: Alan Garny Date: Sun Jun 10 15:45:14 2018 +1200 Some minor cleaning up. commit 01cc058a6b524b577e6c90b7213c9044ada26d15 Merge: 7eca9977c bd80883e6 Author: Alan Garny Date: Fri Jun 8 18:33:34 2018 +1200 Text-based editors: sped up our highlight/replace all method (closes #1679). commit bd80883e6459f3070304c1da6d23339b2cbe9f52 Author: Alan Garny Date: Fri Jun 8 18:16:59 2018 +1200 Slight update to our downloads page (#1679). commit 4ffcd7e96da33aae830e2665932486ddba3ea175 Author: Alan Garny Date: Fri Jun 8 16:19:33 2018 +1200 Some minor cleaning up (#1679). commit bb06046cd66265e53c82ec4394fbb83d64059904 Author: Alan Garny Date: Fri Jun 8 15:55:14 2018 +1200 Some minor cleaning up (#1679). commit fe2af3d7ea9088d0c76941937bdb571b59c55fe3 Author: Alan Garny Date: Fri Jun 8 15:33:34 2018 +1200 Some minor cleaning up (#1679). commit 03c8a3fa218da1bf0073d2412d74409156d4ffbe Author: Alan Garny Date: Fri Jun 8 15:29:34 2018 +1200 Some minor cleaning up (#1679). commit 6b89607075c058aa4b7dce01523b7c375c23cfd0 Author: Alan Garny Date: Fri Jun 8 15:11:09 2018 +1200 Some minor cleaning up (#1679). commit c09a0efda4ef03ee82bbfb3fba31fb8e05dab74c Author: David Brooks Date: Fri Jun 8 15:10:20 2018 +1200 Python: use lowercase name for Python root directory under Linux. commit f4fa68b0902f07b314d229ed8f317b7f61e07e0e Author: Alan Garny Date: Fri Jun 8 13:05:51 2018 +1200 Reverted commit 9080e11 (#1679). It wasn’t really “simplifying” things on Windows since it required some additional classes to be exported. commit b93db8be8ab558f2ae0ff601e38524b1718aa730 Merge: c91252de3 0b65f7293 Author: Alan Garny Date: Fri Jun 8 12:52:50 2018 +1200 Merge branch '\''master'\'' into issue1679. commit 7eca9977c132060bd72b37040cfe18899f11add7 Merge: a47e6bb23 0b65f7293 Author: Alan Garny Date: Fri Jun 8 12:05:29 2018 +1200 Some minor cleaning up. commit 0b65f7293cca98d22f7cf152812ed5bdba2b388e Author: Alan Garny Date: Fri Jun 8 11:48:14 2018 +1200 Some minor cleaning up. commit 8e8c35da41b959a46bba78a60c561183919f4fa4 Merge: 6c8bb9608 a47e6bb23 Author: David Brooks Date: Fri Jun 8 11:41:02 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit c91252de3e4ba0bb53de2246a18614059eded26c Merge: 3bd905615 a47e6bb23 Author: Alan Garny Date: Fri Jun 8 11:37:12 2018 +1200 Merge branch '\''master'\'' into issue1679. commit a47e6bb23cc160e8bc436d76e4bca3d3edf722ca Merge: 5d47ea4dd ad6773eb2 Author: Alan Garny Date: Fri Jun 8 11:33:17 2018 +1200 Some cleaning up. commit ad6773eb2ec237bfdf02c1577e3c7f40b0bd84dc Author: Alan Garny Date: Fri Jun 8 09:45:28 2018 +1200 Some minor cleaning up. commit 6c8bb9608a411660069d15647e15bba37bb56d49 Author: David Brooks Date: Fri Jun 8 09:42:28 2018 +1200 Python: new PythonPackages package for Linux and Windows. commit d7a7219ff28f7461e8ac56eb270e3dd1312bd66f Merge: 44590abf9 5d47ea4dd Author: David Brooks Date: Fri Jun 8 09:41:12 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 9190bb2599904307d5aa21a58a8c7c784de02b41 Merge: 3fb0d978d 5d47ea4dd Author: Alan Garny Date: Fri Jun 8 09:28:18 2018 +1200 Merge branch '\''master'\'' into cleaning-up. commit 5d47ea4dd5e07a3a97eed4af1cc7f206a9dfc536 Merge: d7a1633fc 421180eb8 Author: Alan Garny Date: Fri Jun 8 09:27:30 2018 +1200 Python: fixes for checking SHA of Python executable. commit 3fb0d978dc7ab221305159e397a6b6c4808005c1 Author: Alan Garny Date: Fri Jun 8 09:21:34 2018 +1200 Some minor cleaning up. commit d0acaec6d877af52d6c6c336e1e21513c03d4744 Author: Alan Garny Date: Fri Jun 8 09:20:29 2018 +1200 Some minor cleaning up. commit 129bc9f09c46230b998a8e160f2ff9cd0970eeff Author: Alan Garny Date: Fri Jun 8 09:20:00 2018 +1200 Some minor cleaning up. commit 364c977bdd9635218c0ebc96417b219cdb98d876 Author: Alan Garny Date: Fri Jun 8 09:19:34 2018 +1200 Added a type definition for QBoolSet, QIntSet and QDoubleSet. So we are in sync with our QBoolList, QIntList and QDoubleList types, and also the fact that a QSet can be useful when order is not important and we call the `contains()` method many times. Indeed, QList has a runtime complexity of O(n) while QSet only has a runtime complexity of O(1). commit 97c2c67760d48ea867d8c00e264202de8d095ed7 Author: Alan Garny Date: Fri Jun 8 09:15:27 2018 +1200 Some minor cleaning up. commit 421180eb8fdc16f30ff4459062331bde1327788a Author: David Brooks Date: Fri Jun 8 09:12:48 2018 +1200 Python: new package for Windows debug mode. commit f49f4489dcb610efbd2968b80b8f8499406f82ce Author: Alan Garny Date: Fri Jun 8 09:08:52 2018 +1200 Some minor cleaning up. commit acc4a386ae15b6601a9ad8562d51e8222bcc2d07 Author: David Brooks Date: Thu Jun 7 22:26:19 2018 +1200 Python: new packages for Linux and Windows. commit 6a0f7aef513dce808d212451666fe8c7928b2e47 Author: David Brooks Date: Thu Jun 7 21:51:53 2018 +1200 Python: fixes for checking SHA of Python executable. commit 44590abf9cdb082d611081e8067817c92dfbcc23 Author: David Brooks Date: Thu Jun 7 21:27:12 2018 +1200 Jupyter: add scripts to run Jupyter. commit c21c84dda5d79cedac07cbab771da144969c451e Author: David Brooks Date: Thu Jun 7 21:23:49 2018 +1200 Python: bundle Jupyter with OpenCOR; new macOS Python packages package. commit de92a41ac29d7bcf5a370cd27bd6fb1f9d687eb2 Author: David Brooks Date: Thu Jun 7 21:18:47 2018 +1200 Python: check the SHA of the Python executable; use `./python` (instead of `./Python`) as Linux Python root; update macOS Python package. commit 3bd905615e330d1811920ca6ff627f92573b4ed7 Author: Alan Garny Date: Thu Jun 7 17:39:03 2018 +1200 Editor widget: speed up the highlighting even further (#1679). commit 961d7f64d467191813e412d1e2550a72b880f7b5 Author: Alan Garny Date: Thu Jun 7 17:22:41 2018 +1200 Editor widget: speed up the highlighting even further (#1679). commit 4349a79d5544ce89a3f76ef7d5893d378e1a5644 Merge: 32c3f770b d7a1633fc Author: Alan Garny Date: Thu Jun 7 16:14:17 2018 +1200 Merge branch '\''master'\'' into issue1679. commit d7a1633fc0744d9ea232827b3854dda1b90522e1 Author: David Brooks Date: Thu Jun 7 16:09:57 2018 +1200 Python: we now check the SHA of the Python executable commit 32c3f770b80f3b6abc4283814ca5c52c4589c838 Merge: 3ae82a190 2008bddac Author: Alan Garny Date: Thu Jun 7 16:03:00 2018 +1200 Merge branch '\''master'\'' into issue1679. commit 2008bddac41cdf341ae4414ca78f4a007f989e36 Author: David Brooks Date: Thu Jun 7 16:01:40 2018 +1200 Python: updated SHAs for macOS package commit 3ae82a190c74376b932955feade7680539fbfd47 Merge: e7d0e8ca9 771fda8a0 Author: Alan Garny Date: Thu Jun 7 15:57:11 2018 +1200 Merge branch '\''master'\'' into issue1679. commit 771fda8a0b6b0ca47a9192575928195462176410 Merge: 65f88fb4a 01a0f3d5a Author: Alan Garny Date: Thu Jun 7 15:55:36 2018 +1200 VBS scripts. commit 01a0f3d5ac209f80482621729e0b5b10db61b2d1 Author: Alan Garny Date: Thu Jun 7 15:33:49 2018 +1200 VBS scripts: make sure that they work fine with arguments. commit 4fa97c1fb0c2194ad9daeb50fdea7ff7d05dc2bb Author: David Brooks Date: Thu Jun 7 14:47:21 2018 +1200 Jupyter: update kernel version to match OpenCOR'\''s; remove debugging. commit 9b25b379331f098e62311b6abc1417274e8bc1f7 Author: David Brooks Date: Thu Jun 7 14:46:27 2018 +1200 Jupyter: bundle our kernelspec with OpenCOR. commit e7d0e8ca9333eb4cdc521b9846b405d30fe65d0d Author: Alan Garny Date: Thu Jun 7 14:16:07 2018 +1200 Editor widget: speed up the undoing/redoing of the last action (#1679). commit 7f820afdb873581ecb1c53d0d97b175b277a6b51 Author: Alan Garny Date: Thu Jun 7 11:52:30 2018 +1200 Some minor cleaning up. commit 5c4c88f7f2dfd62cc3fa81bafaf51f83e02808da Author: David Brooks Date: Wed Jun 6 21:59:28 2018 +1200 Python: minor code tidy. commit 8b92e17bec518979b76e268ca988a64b5833ebfd Author: David Brooks Date: Wed Jun 6 21:31:10 2018 +1200 Python: reliably detect when a simulation run has finished. commit e6d06ab2e2ac35a4f7f9e15da3b1a34b37d38532 Author: Alan Garny Date: Wed Jun 6 19:05:53 2018 +1200 Revert "Some minor cleaning up (#1679)." This reverts commit cae0daabfc59f64298c366520e0d1dba2941bbb6. commit e8209101c67d9ca8546eb35348adea56fcfbae51 Author: Alan Garny Date: Wed Jun 6 18:29:28 2018 +1200 Some minor cleaning up (#1679). commit cae0daabfc59f64298c366520e0d1dba2941bbb6 Author: Alan Garny Date: Wed Jun 6 18:28:59 2018 +1200 Some minor cleaning up (#1679). commit 29fc50c408240219c8820d2f07679eb2f5a26ea1 Author: Alan Garny Date: Wed Jun 6 18:27:58 2018 +1200 Editor widget: make sure that replacing all is now fast (#1679). Related to commit 2d88dd5. commit 236d8062d206c0f5bb1150d3831b1e980339b45f Author: Alan Garny Date: Wed Jun 6 18:20:46 2018 +1200 Some minor cleaning up. commit 1da721b5d5c119e4eef30a529a3afff956f81ac7 Author: Alan Garny Date: Wed Jun 6 17:22:58 2018 +1200 Some minor cleaning up. commit 9080e11c0f8f9db452d5d100bd3c05b23365e29b Author: Alan Garny Date: Wed Jun 6 17:14:10 2018 +1200 Some minor cleaning up. Effectively “simplified” things by not forwarding some signals. commit 90debc86279f45b901e7521282e3a9c867a6b327 Author: Alan Garny Date: Wed Jun 6 16:38:28 2018 +1200 Some minor cleaning up (#1679). commit 2d88dd57009c8aaadd23a0a2ebad86e876240de2 Author: Alan Garny Date: Wed Jun 6 16:36:33 2018 +1200 Editor widget: now process highlighting/replacing all much faster (#1679). Well, for replacing all, we still need to do a bit more work that has already been identified. commit 4880f8c57b8b9a2a7df003523956b90b91cd3fe5 Author: Alan Garny Date: Wed Jun 6 10:39:20 2018 +1200 Editor widget: don'\''t clear the highlighting if we only press the Shift, Ctrl, Alt or Meta key (#1679). commit 5c017baf744dedcc4909ee24c7486a5fa6c721da Merge: b9455ca93 65f88fb4a Author: Alan Garny Date: Wed Jun 6 10:25:04 2018 +1200 Merge branch '\''master'\'' into issue1679. commit 65f88fb4a7464e4568449dd515918333e10a5666 Merge: adace6956 97216e83d Author: Alan Garny Date: Wed Jun 6 10:23:04 2018 +1200 Text-based editors: now have word-wrap alignment (closes #1680). commit 97216e83d3eae49fed7ffd0cf07a99a2927ee6d7 Author: Alan Garny Date: Wed Jun 6 10:08:44 2018 +1200 Slight update to our downloads page (#1680). commit db7d2b18e8be3711489f698463afaf1c0079273a Author: Alan Garny Date: Wed Jun 6 10:06:05 2018 +1200 Text-based editors: now have word wrap alignment (#1680). commit 818c2618836cb7bd9dc4de9cc68c7c840503f773 Author: Alan Garny Date: Wed Jun 6 10:04:11 2018 +1200 Some minor cleaning up. commit dc7a674f59a29596f2454923c2b1f9a7e590a89a Author: David Brooks Date: Tue Jun 5 22:03:15 2018 +1200 Graphs: revert code back to not using a different colour for each run. commit 568580fbfcd747c64724d8cba3f0ccc8edea0544 Author: David Brooks Date: Tue Jun 5 22:01:30 2018 +1200 Python: `set_python_path.py` belongs with Python plugin. commit 212aadd5a58496c12aa64664df21254139232550 Merge: cc977d7b3 adace6956 Author: David Brooks Date: Tue Jun 5 16:45:26 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit b9455ca93fbadb8601d26065f01f941685dc6edf Author: Alan Garny Date: Tue Jun 5 15:40:49 2018 +1200 Editor widget: better handling of the cursor position (#1679). commit 890c016143f345904dccd87f5ddeb2c55a9890ff Author: Alan Garny Date: Tue Jun 5 15:12:08 2018 +1200 Editor widget: made our vertical scroll bar'\''s thumb more visible (#1679). commit f7fa8eb886b806d6e01dd58091e5fc8d74dae4dd Author: Alan Garny Date: Tue Jun 5 15:03:14 2018 +1200 Some minor cleaning up. commit 4e65d348ca6064308378560814187272d0f0d742 Author: Alan Garny Date: Mon Jun 4 21:56:29 2018 +1200 Some minor cleaning up. commit 8cb7fc20267dd4ffbc569e703cf5a1d591ec788e Author: Alan Garny Date: Mon Jun 4 16:19:26 2018 +1200 Editor widget: no need to (re)select text after highlighting it upon double clicking (#1679). commit da74e90248003de64239b7f081a8e074a3d01ed7 Author: Alan Garny Date: Mon Jun 4 16:11:09 2018 +1200 CellML Text view: slight improvement to our uncommenting of some code (#1679). commit e908170907c78f342b5b6554d20036f5d55a7406 Author: Alan Garny Date: Mon Jun 4 16:09:17 2018 +1200 QScintilla support: slight improvement to our QScintillaWidget::selectWordAt() method (#1679). commit 024c5488f0adddc194e8dcf9327f50611543df1a Author: Alan Garny Date: Mon Jun 4 15:16:02 2018 +1200 Some minor cleaning up. commit e45b227d2a22b5ff80e96a03e79c1b39ffe5dcec Author: Alan Garny Date: Mon Jun 4 14:52:50 2018 +1200 Editor widget: always show our find/replace widget with the "selected" text (#1679). The idea is that if nothing is selected and there is no word at the current position, then we start with with no find text (while before we could have had the previous find text, had the find/replace widget been shown and then hidden before). commit cc1b7b97be164185fa384bde98fbc33fe58418f6 Author: Alan Garny Date: Mon Jun 4 13:57:03 2018 +1200 Some minor cleaning up. commit 3bf41c14a8aca3d25375be4e54599eecafc7458c Author: Alan Garny Date: Mon Jun 4 13:55:56 2018 +1200 Editor widget: no need to wait half a second between two highlighting (#1679). Our new highlighting code is much faster, so no need to wait that long anymore. Still, we want to do it through a single shot since it can’t harm. commit c960711df5b74ddeb3cbb74c4c679dee44973b7f Author: Alan Garny Date: Mon Jun 4 13:44:48 2018 +1200 Editor widget: don'\''t reselect the current word when highlighting all (#1679). Indeed, (our new) highlighting all shouldn’t change whatever is currently selected. commit 07c9d9ba19185ebf0ee43886a51db5ed94595d33 Author: Alan Garny Date: Mon Jun 4 13:42:28 2018 +1200 Editor widget: improved the showing of our find/replace widget (#1679). commit 2bf67bc9d5503199bf5692cc7921d7a2c39f7ab5 Author: Alan Garny Date: Mon Jun 4 13:36:10 2018 +1200 Editor widget: improved the painting of our vertical scroll bar (#1679). We now paint our lines using an alpha colour (so we can see the scroll bar cursor). Not only that, but we also allow only one line at a given position (otherwise the alpha value of that line might become irrelevant). commit ad653e017d4448f0e6acb98b7346eb70921ce084 Author: Alan Garny Date: Sun Jun 3 17:49:41 2018 +1200 Some minor cleaning up (#1679). commit c87d1b3561f74fe6b2f2811e96cbb5d2edf4cf58 Author: Alan Garny Date: Sun Jun 3 14:40:31 2018 +1200 Editor widget: very slight speed improvement (#1679). commit ef541643df98da4d5c3628fa1a2156656b5bf0d8 Author: Alan Garny Date: Sun Jun 3 13:54:55 2018 +1200 Editor widget: very slight speed improvement (#1679) commit 69f0b49b4c6b9451d7f0dbfbe4b4b12d2016a93c Author: Alan Garny Date: Sun Jun 3 13:51:38 2018 +1200 Editor widget: very slight speed improvement (#1679) commit 2bdc14a8d951cea3e488293fc05ff06746a4b3b0 Author: Alan Garny Date: Sat Jun 2 19:57:25 2018 +1200 Editor widget: slight speed improvement by directly interacting with Scintilla (#1679) commit adace69564f2b5e971c745a653af5c6cf8a14c32 Merge: a430b7aa2 6c9201252 Author: Alan Garny Date: Fri Jun 1 20:22:43 2018 +1200 Editor widget: prevent infinite "Replace all" actions (closes #1677). commit 6c9201252e4a987d00f3db6833d0906ee6c4d008 Author: Alan Garny Date: Fri Jun 1 19:27:48 2018 +1200 Slight update to our downloads page (#1677). commit 6ada9bcd194b2b751a39909ba3da8d2603b45268 Author: Alan Garny Date: Fri Jun 1 19:25:04 2018 +1200 Some minor improvement. commit 35693cea463e41834abf0130a6c59341767d181e Author: Alan Garny Date: Fri Jun 1 16:01:53 2018 +1200 Editor widget: prevent infinite "Replace all" (#1677). commit aa9c74d11e0288d51c7128d8a9b26581e3ad4191 Author: Alan Garny Date: Fri Jun 1 15:50:17 2018 +1200 Editor widget: speed things up by temporarily disabling the tracking of changes when replacing all (#1677). commit bf6495aee11d7613b59233bc8b9da09ef71b67d7 Author: Alan Garny Date: Fri Jun 1 11:33:32 2018 +1200 Added the user and developer documentations as a sub module (#1544). commit b0fe17861a1ef391ae22c2005ae9b0340025af38 Author: Alan Garny Date: Fri Jun 1 11:24:48 2018 +1200 Updated our .gitattributes file. commit 84b46ba053e27a5b65b7a83c1e92627994d45607 Author: Alan Garny Date: Fri Jun 1 10:55:46 2018 +1200 Rely on our copy of Sphinx to build the documentation (#1544). commit 12427fe5e23364bf4190dcfbefa6b65a9aabf98f Merge: 55f4ea8bc a430b7aa2 Author: Alan Garny Date: Fri Jun 1 09:08:26 2018 +1200 Merge branch '\''master'\'' into issue1544. commit a430b7aa21775ff69f02e87be1dd545287e26b57 Author: Alan Garny Date: Thu May 31 19:12:50 2018 +1200 Some minor cleaning up. commit d39e9b5ff2e0198718cf34638c36653798bcad6e Merge: 773722d03 9bcaf2dd6 Author: Alan Garny Date: Thu May 31 18:54:09 2018 +1200 High DPI support. commit 9bcaf2dd66aee13af4397bf2614fbc3bb696a634 Author: Alan Garny Date: Thu May 31 18:04:06 2018 +1200 Added support for high DPI. commit 773722d03c419bfb6efb271367a543e5763a4446 Merge: 59ccb9837 6d546d022 Author: Alan Garny Date: Thu May 31 17:57:21 2018 +1200 libSBML: upgraded to version 5.17.0 (closes #1671). commit 6d546d02266477cd6777d82a15995281050616af Author: Alan Garny Date: Thu May 31 17:33:14 2018 +1200 Some minor cleaning up. commit b3a045bab98d60e87b5a023d38380b79ed579b3a Author: Alan Garny Date: Thu May 31 17:24:02 2018 +1200 Some minor cleaning up. commit 51081b03ccddbc9db1727acef4aac952f03ea535 Author: Alan Garny Date: Thu May 31 16:55:42 2018 +1200 Some minor cleaning up. commit 3bc80b67716dc569e3a4c34cecec8b4754e6ba8e Author: Alan Garny Date: Thu May 31 16:17:43 2018 +1200 Some minor cleaning up. commit 163b39736c28bd92deb39c8db81fd2c48b3ae0d5 Author: Alan Garny Date: Thu May 31 14:26:58 2018 +1200 Stop building libSEDML (#1671). commit 241d7f08a9eca418778eb30671b901b3b92dda75 Author: Alan Garny Date: Thu May 31 14:26:26 2018 +1200 SED-ML API package: new binaries (#1671). commit 0ef6ae6b4128495de10094938aaa8cb1edff6b40 Author: Alan Garny Date: Thu May 31 14:17:52 2018 +1200 Building libSEDML since it relies on libSBML (#1671). On Linux and macOS, it doesn’t matter, but on Windows it does since we must import symbols. This being, libSEDML used to be built with ZLIB on while we have it disabled for libSBML. So, we want the two libraries to be in sync, if anything. commit 288057c5198045a4d8ccc7ac84bb2b8bd220dcbe Author: Alan Garny Date: Wed May 30 17:58:58 2018 +1200 SBML API package: updated our tests (#1671). commit 59ccb983704f3b9b2962f20622027fbc67207e45 Merge: 3c3f075b4 84664c7e6 Author: Alan Garny Date: Wed May 30 16:13:01 2018 +1200 libSBML: upgraded to version 5.17.0 (closes #1671). commit 84664c7e61876c5237ba36239bcf8a57dbd69ca0 Author: Alan Garny Date: Wed May 30 15:59:04 2018 +1200 Stop building only the SBML API package (#1671). commit 36a6a3c7b02f6e0dba9f0de40e1f4a51e3882865 Author: Alan Garny Date: Wed May 30 15:58:22 2018 +1200 SBML API package: binaries for version 5.17.0 (#1671). commit 8e8b9d2a33209f638d49c8faf49f103780c92cb5 Author: Alan Garny Date: Wed May 30 15:24:53 2018 +1200 Only build the SBML API package (#1671). commit 9ae34dc802ec548945c4b55542dde694277a8a51 Author: Alan Garny Date: Wed May 30 15:24:20 2018 +1200 SBML API package: upgraded to version 5.17.0 (#1671). commit 3c3f075b400228dc66be8e85e199e2a11d30f225 Merge: 5f1504ed1 93cef9c9d Author: Alan Garny Date: Wed May 30 15:04:15 2018 +1200 libgit2: upgraded to version 0.27.1 (closes #1672). commit 93cef9c9d26d66ae17dde3c75b4a3bd4c6c1e6cd Author: Alan Garny Date: Wed May 30 14:36:55 2018 +1200 Slight updates to our downloads pages (#1672). commit 83b7695632fe1cd4471c723f9c4b24b7f0948906 Author: Alan Garny Date: Wed May 30 14:34:10 2018 +1200 Stop building only the libgit2 package (#1672). commit 770621f72f8ac908ea887524101eb2d1f5972593 Author: Alan Garny Date: Wed May 30 14:33:36 2018 +1200 libgit2 package: binaries for version 0.27.1 (#1672). commit b60dfb6be85ebe562c540e109c78638ba1e7dc36 Author: Alan Garny Date: Wed May 30 14:21:29 2018 +1200 Only build the libgit2 package (#1672). commit 2264fac4a4e8d52b9ed359632b2dae5873d7657d Author: Alan Garny Date: Wed May 30 14:20:25 2018 +1200 Only build the libgit2 package (#1672). commit 32c31fc7db3782df975c220e2b1f00269196f53c Author: Alan Garny Date: Wed May 30 14:17:13 2018 +1200 Only build the libgit2 package (#1672). commit 7c6cefbdccb50fb5b87a2af338da6b6b366acb0c Author: Alan Garny Date: Wed May 30 14:16:55 2018 +1200 libgit2 package: upgraded to version 0.27.1 (#1672). commit 55f4ea8bc4aa02025c5db89953608b5d43c4cfc6 Merge: 66bf995e4 5f1504ed1 Author: Alan Garny Date: Wed May 30 11:19:17 2018 +1200 Merge branch '\''master'\'' into issue1544. commit cc977d7b3a9a64107c9b95bce51347aba174f26b Merge: 2f472d4aa f2c30165f Author: David Brooks Date: Tue May 29 21:01:09 2018 +1200 Merge branch '\''pythonplugin'\'' of github.com:dbrnz/opencor into pythonplugin commit 2f472d4aa6b123f6bdf1f1e7ee46d40a3cf7461f Merge: bef376426 5f1504ed1 Author: David Brooks Date: Tue May 29 21:00:36 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 5f1504ed152868d0f2ff277785a82cc6578d86bb Merge: 42162b9d2 a32ba377c Author: Alan Garny Date: Tue May 29 18:48:38 2018 +1200 New snapshot. commit a32ba377cc1c27a542d909aea29c1f3ce3e90544 Author: Alan Garny Date: Tue May 29 18:18:06 2018 +1200 New snapshot. commit 42162b9d280e04bb4aaa44f0b3fa933022750e07 Merge: cdadcb095 558947fcd Author: Alan Garny Date: Tue May 29 18:17:31 2018 +1200 Simulation Experiment view: now keep track of unselected graphs in a SED-ML file / COMBINE archive (closes #1631). commit 558947fcd8fcb526d3e4b63bc3cad4ee51bcc479 Author: Alan Garny Date: Tue May 29 17:40:44 2018 +1200 Some minor cleaning up. commit e39fbaeec95f94dfcfa9cf422586147e0169d1a3 Author: Alan Garny Date: Tue May 29 17:39:35 2018 +1200 Graph Panel widget: properly initialise the selected state of a graph (#1631). commit f53ca461f8761f409e1c8352e3b659fe8f46f0fa Author: Alan Garny Date: Tue May 29 17:15:42 2018 +1200 Some minor cleaning up. commit e96ed325afc6709ae46cf37a8bf741a9a6fc1468 Author: Alan Garny Date: Tue May 29 17:07:34 2018 +1200 Graph Panel widget: properly initialise the selected state of a graph (#1631). commit 80e09a8233d7da6bb288f1c44313cd06266d062c Author: Alan Garny Date: Tue May 29 16:44:44 2018 +1200 Graph Panel widget: a graph can now be initialised selected or unselected (#1631). commit 53435eda02977611d773abf2abc8459c5388cf86 Author: Alan Garny Date: Tue May 29 16:40:16 2018 +1200 Some minor cleaning up (#1631). commit 4ec66c44c8c2687544c8f82734b8e66b0292f80d Author: Alan Garny Date: Tue May 29 16:28:34 2018 +1200 Some minor cleaning up (#1631). commit cdadcb095df5b1dc8a4ff423f709f1ae74cedab7 Merge: d631ab639 0b332c671 Author: Alan Garny Date: Tue May 29 16:03:51 2018 +1200 Simulation Experiment view: now keep track of unselected graphs in a SED-ML file / COMBINE archive (closes #1631). commit 0b332c6718d84890e462b8fa5a3ed994532d6522 Author: Alan Garny Date: Tue May 29 15:46:13 2018 +1200 Slight update to our downloads page (#1631). commit 07ee6a62ed7a27f42c53ef7f51449dd181b7f60e Author: Alan Garny Date: Tue May 29 15:43:50 2018 +1200 Some minor cleaning up. commit 63444a70e45ddb0df832985a49277b19a4352977 Author: Alan Garny Date: Tue May 29 15:42:57 2018 +1200 Simulation Experiment view: can now retrieve (from a SED-ML file) the selected state of a graph (#1631). commit 2b2a611b6ac743e1d7c2714ab6793a423eebd08d Author: Alan Garny Date: Tue May 29 15:27:04 2018 +1200 Simulation Experiment view: now export to SED-ML the selected state of a graph (#1631). commit d631ab63951fbb7955c16f64e5a46bee7899718f Author: Alan Garny Date: Mon May 28 16:05:52 2018 +1200 Deployment: make sure that we deploy the qavfmediaplayer plugin on macOS. For some reasons, it'\''s now needed...?! (Maybe because of QtWebKit?) commit 1bfa0697785c327cb2e6984d36f9654154526a07 Merge: b4960ff8c 502c1fd12 Author: Alan Garny Date: Mon May 28 15:08:23 2018 +1200 Simulation Experiment view: now automatically assign a colour to a new graph (closes #1665). commit 502c1fd12aa9232a944e09a0ca966427deb63672 Author: Alan Garny Date: Mon May 28 14:52:03 2018 +1200 Slight update to our downloads and what is new pages (#1665). commit 787dc5632b1033b2c84e9f943d061cb8b16c3cdd Author: Alan Garny Date: Mon May 28 14:48:27 2018 +1200 Graph Panel widget: make sure that we reset our colour sequence if all the graphs have been removed (#1665). commit 2c0eaec86451b34b8a9e1d1cf271709cfd53fddf Author: Alan Garny Date: Mon May 28 14:43:24 2018 +1200 Graph Panel widget: enable our legend by default (#1665). commit 3bf0f9051eb5b880a4391e8058d5575ddaa7b751 Author: Alan Garny Date: Mon May 28 14:19:10 2018 +1200 Simulation Experiment view: now automatically assign a colour to a new graph (#1665). commit b4960ff8c7d6a3e5c069649814bb90ce96ffa505 Merge: 931d77843 b0704d223 Author: Alan Garny Date: Sun May 27 13:31:15 2018 +1200 Prevent warnings on Linux. commit b0704d223fe3857cf8afdd2378b40ffb885149d0 Author: Alan Garny Date: Sun May 27 12:45:13 2018 +1200 Some minor cleaning up. commit e4d2ad26c01553bdfce45fcdb91aa32739e4b9e3 Author: Alan Garny Date: Sun May 27 11:49:00 2018 +1200 Prevent a warning on Linux. commit f16e91c43d8fc1cfdd0a294a22b696dca28c8471 Author: Alan Garny Date: Sun May 27 11:48:36 2018 +1200 Some minor cleaning up. commit 947b6a64607976083c109ee118ae3e75169db107 Author: Alan Garny Date: Sun May 27 11:42:28 2018 +1200 Prevent a couple of warnings on Linux. commit 2a1feed0244cd90dffb35f9cb7a8d191a75b1910 Author: Alan Garny Date: Sun May 27 11:36:02 2018 +1200 Prevent a warning on Linux. commit 931d77843dee700e823bd0780dcfb8287571758f Merge: e4fc4413d 4038227aa Author: Alan Garny Date: Sun May 27 10:30:57 2018 +1200 Some cleaning up. commit 4038227aaebc53408bbdb1d1ebbc27b4bf3e0275 Author: Alan Garny Date: Sun May 27 10:10:21 2018 +1200 Some minor cleaning up. commit 61ee1c264d98706f43ea775994438edc67e54746 Author: Alan Garny Date: Sun May 27 10:08:41 2018 +1200 Some minor cleaning up. commit 16adf6ada5d717bc1fcbfaea97fe420da777c478 Author: Alan Garny Date: Sun May 27 09:55:29 2018 +1200 Simulation Experiment view: make sure that mGraphPanelsWidgetSizes gets properly initialised. commit 42126edabe932fa704b4cbd58746c8f104a79e13 Author: Alan Garny Date: Sun May 27 09:49:55 2018 +1200 Some minor cleaning up. commit ff1476f32e5e4bcfbb37a464b6f6b9d422af40a6 Author: Alan Garny Date: Sat May 26 21:35:22 2018 +1200 Graph Panel widget: prevent a GUI glitch on Windows and Linux. commit f2c30165f28afb233e0ff06c3d0a65e23a5ccc8f Merge: bef376426 0038069d9 Author: David Brooks Date: Sat May 26 20:36:03 2018 +1200 Merge branch '\''jupytercli'\'' into pythonplugin commit 0038069d96dd0b2a6ede68924bd2dca6edfeaf6a Author: David Brooks Date: Sat May 26 20:24:04 2018 +1200 Python: extend `set_python_path.py` to optionally add extra arguments for Python. commit 9141d046333130e5ea13ff13059b074cb126208f Author: David Brooks Date: Sat May 26 20:08:39 2018 +1200 Python: implement `OpenCOR.closeSimulation()` commit 6044b09d2a6790ab6cd76b87a4cbbe0685af54d3 Author: David Brooks Date: Sat May 26 08:29:23 2018 +1200 Python: tidy code. commit ebf62f2dc71464f3511fa4498ad6172eda80e9ce Author: David Brooks Date: Sat May 26 08:28:56 2018 +1200 Python: '\''unmanage'\'' the file if CLI version couldn'\''t open it. commit 58d80f3ea679c6d526e9207ca75a7d00b7900f48 Author: David Brooks Date: Sat May 26 08:27:10 2018 +1200 Python: we still need to open files via the central widget when using the console. commit 0bdb49cefe125d844ed8ca235481f2fdc7f8a569 Merge: 19c8248ae e4fc4413d Author: Alan Garny Date: Fri May 25 18:20:48 2018 +1200 Merge branch '\''master'\'' into cleaning-up. commit e4fc4413de7b3150fab3953ea823c346d46849df Merge: 4b42b6ad7 6f1a933c5 Author: Alan Garny Date: Fri May 25 16:17:21 2018 +1200 Simulation Experiment view: now provide a default value for the legend title of a valid graph (closes #1662). commit 6f1a933c50942e4bf5f3e6ae3e2cc53aeb7012d3 Author: Alan Garny Date: Fri May 25 16:02:56 2018 +1200 Slight update to our downloads page (#1662). commit a7381b268c5595ac1c53b3a84d0e25a26a06af9e Author: Alan Garny Date: Fri May 25 16:01:39 2018 +1200 Simulation Experiment view: now provide a default value for the legend title of a valid graph (1662). commit 5b5c1ef3037ccd033800ad34968b1c5f65026342 Author: David Brooks Date: Thu May 24 21:38:14 2018 +1200 Python: load SED-ML information into a simulation. commit 8aae8e3b7c3b0fc6f43c618a8a8126f613ad19a1 Author: David Brooks Date: Thu May 24 21:35:32 2018 +1200 Python: make sure we use the appropriate matplotlib backends. commit 0a9de46114eda119daec1437f9388290adf7be1e Author: David Brooks Date: Thu May 24 21:32:57 2018 +1200 Python: we need the solver plugins in the CLI application. commit bef376426d01522956a33a1ac6c0c6389e2af869 Merge: ab55d989f 4b42b6ad7 Author: David Brooks Date: Thu May 24 16:31:40 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit ab55d989fbc3c250770981ad82f2b5bda36b0c49 Merge: 05dab62f7 dd07afd0f Author: David Brooks Date: Thu May 24 16:29:17 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 05dab62f75445668ee8f272638bc3e52cac9ad8e Author: David Brooks Date: Thu May 24 16:24:52 2018 +1200 Python: distribute `set_python_path.py` script with installers. commit 8e89fec4bfee112ffac9b792d83158e5790f3321 Author: David Brooks Date: Thu May 24 16:23:46 2018 +1200 Python: keep Python in a sub-directory for Linux. commit 19c8248ae3945790d1e05ae93af1b91cc1786b51 Author: Alan Garny Date: Thu May 24 15:46:45 2018 +1200 Revert "Central widget: prevent a GUI glitch when changing modes." This reverts commit 771708d80c0d78d4765319a2fc0f6d57ef0a69d3. Indeed, there is definitely no need for this. It’s just that there is something between the current codebase and that of 23 April 2018 (i.e. our latest snapshot) that is different and that results in the issue this commit was trying to address. In fact, there is another issue, which is that the Simulation Experiment view flashes a bit when switching to it and there are several graph panels, which results in the N62 SED-ML file being considered modified while it clearly shouldn’t be (and isn’t using the 2018-04-23 snapshot). So, we need to figure out what we did that causes those issues… commit f1f00d26ac73b447dc0cb34fc702b732689592da Author: Alan Garny Date: Thu May 24 15:01:18 2018 +1200 Some minor cleaning up. commit 771708d80c0d78d4765319a2fc0f6d57ef0a69d3 Author: Alan Garny Date: Thu May 24 13:49:37 2018 +1200 Central widget: prevent a GUI glitch when changing modes. commit 67c90ebf4709647ff26db9c45f6ccd0c3e20793c Author: Alan Garny Date: Thu May 24 11:37:45 2018 +1200 Editor widget: don'\''t highlight a space-based string. commit b4b339b3509e88474796dcd642dc287ac5f2a400 Author: Alan Garny Date: Thu May 24 11:20:15 2018 +1200 Editor widget: make sure that we properly handle the use of TAB/BACKTAB. Also improved our handling of the Esc key. commit b48badf77bb026ed5e0b3be66130aca2577af213 Author: Alan Garny Date: Thu May 24 10:52:34 2018 +1200 Removed unnecessary const and const references. commit d5d0763c8ea04798dd9618b50c9dcaea6ca309aa Author: Alan Garny Date: Thu May 24 10:51:56 2018 +1200 Removed unnecessary const and const references. commit adcd51b6ce649a7e1d03ec5a4a9b637446de92d0 Author: Alan Garny Date: Thu May 24 10:07:54 2018 +1200 Some minor cleaning up. commit 4b42b6ad774eda44f54c97d1dfbf98d739621d3d Merge: 95fdcc00e 40895b0ec Author: Alan Garny Date: Thu May 24 09:45:07 2018 +1200 Simulation: separated out GUI dependencies (closes #1657). commit 40895b0ecc175fa171404106c7f1c242918b089a Author: Alan Garny Date: Thu May 24 09:15:57 2018 +1200 Some minor cleaning up (#1657). commit 12a16b68841284809a6755fc49644dffe7084ac5 Merge: 59933e27e 66e7e3d24 Author: Alan Garny Date: Thu May 24 09:11:25 2018 +1200 Only initialise parameter type to QIcon map when it is first used. This prevents a crash when using the CLI version of OpenCOR (since `QIcon` cannot be used in the CLI version). commit 8938e5386f4c424baf87b19d0b42fedf46c74495 Author: David Brooks Date: Wed May 23 22:08:40 2018 +1200 Python: use CLI versions of file opening functions. commit ae65abbda0637f4a87f0bb3cbb2ac89efcf04279 Author: David Brooks Date: Wed May 23 22:07:32 2018 +1200 Tidy code. commit e31c45f731dbd20d9a785c40e417992a3868f962 Author: David Brooks Date: Wed May 23 22:07:01 2018 +1200 Python: the Jupyter kernel depends on the DataStore and SimulationSupport plugins. commit 66e7e3d24acd1639aa5d4b6f54454b1edc343845 Author: David Brooks Date: Wed May 23 18:38:16 2018 +1200 Only initialise parameter type to QIcon map when it is first used (#1657). If initialisation is done at plugin load time then a CLI application will crash as QIcon is a GUI class. commit cf63ec27e1ed39bb5751439684ccf34a7d904f20 Author: David Brooks Date: Wed May 23 18:38:16 2018 +1200 Only initialise parameter type to QIcon map when it is first used (#1657). If initialisation is done at plugin load time then a CLI application will crash as QIcon is a GUI class. commit 59933e27e62863e4b41e7355107721485c180b6d Merge: 1ce85a543 95fdcc00e Author: Alan Garny Date: Wed May 23 17:39:34 2018 +1200 Merge branch '\''master'\'' into issue1657. commit 95fdcc00e2b653299e9078f36ebd5bf980ef8628 Merge: dd07afd0f 66c0d5cf4 Author: Alan Garny Date: Wed May 23 17:25:59 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file (closes #1414). commit 66c0d5cf4a75bb20bb701565460f4da0cdd07637 Author: Alan Garny Date: Wed May 23 16:14:58 2018 +1200 Editor widget: can now find a multiline piece of text (#1414). commit 79dbaf594596f50a697ae0f9ed329bfc55557432 Author: Alan Garny Date: Wed May 23 15:46:55 2018 +1200 Editor widget: highlight all occurrences of a word that gets selected by double clicking on it (#1414). commit c71e5d92958a3e4360841e4dc05fc52d95711584 Author: Alan Garny Date: Wed May 23 15:32:36 2018 +1200 Editor widget: optimised the highlighting/finding of some text (#1414). commit 656e0bd1a2df59ac6e81cfb1c0f50aea6c85ab3f Author: Alan Garny Date: Wed May 23 15:17:21 2018 +1200 Editor widget: highlight all occurrences of a word that gets selected by double clicking on it (#1414). commit d7322ffcfa21d1c1be1642688f26c2c00039019c Author: Alan Garny Date: Wed May 23 14:31:16 2018 +1200 Some minor cleaning up. commit f2697a85642aa0b5d0d2a239d252047c377385c4 Merge: 4a187bed0 1ce85a543 Author: David Brooks Date: Wed May 23 13:33:00 2018 +1200 Merge remote-tracking branch '\''agarny/issue1657'\'' into jupytercli commit 4a187bed0f56046227eab3e8b17d331c734c1eb7 Merge: cbdf1955a dd07afd0f Author: David Brooks Date: Wed May 23 13:29:19 2018 +1200 Merge branch '\''master'\'' into jupytercli commit 1ce85a543bb4946f2c8dac57120b081c66214487 Author: Alan Garny Date: Wed May 23 11:46:30 2018 +1200 Don'\''t associate an icon with a data store variable anymore (#1657). commit dd07afd0f06a53f5f69be6e08c94c68afe8614b1 Merge: 7aacd4164 5f4ff66cf Author: Alan Garny Date: Wed May 23 09:59:51 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file (closes #1414). commit 5f4ff66cf38f6f34e67b31233e4e35a1549f114b Author: Alan Garny Date: Wed May 23 09:40:54 2018 +1200 CellML Text editing: handle un/commenting without relying on the handling of a signal (#1414). commit cbdf1955a32398d1af54e739986be0d476abfe61 Author: David Brooks Date: Tue May 22 20:32:43 2018 +1200 Core: provide non-GUI routines for opening files. commit 799739875503ed0df83761e93285816c42e2ca3b Author: Alan Garny Date: Tue May 22 18:00:23 2018 +1200 Some minor cleaning up (#1414). commit 9461cdd492a177471cf4776f085f7254fca15f1b Merge: 13bb54d54 7aacd4164 Author: David Brooks Date: Tue May 22 17:59:08 2018 +1200 Merge branch '\''master'\'' into jupytercli commit b76fd3ab1794c4c969127ccf0b7d3ee04c82228a Author: Alan Garny Date: Tue May 22 17:58:28 2018 +1200 Some minor cleaning up (#1414). commit aa0f797e47e8bf9477358186a2a8af9cd85c4e4d Author: Alan Garny Date: Tue May 22 17:46:56 2018 +1200 Some minor cleaning up (#1414). commit a916e6e0a393464423d227b9b93e013282ae4778 Merge: e14985ab0 7aacd4164 Author: Alan Garny Date: Tue May 22 17:28:24 2018 +1200 Merge branch '\''master'\'' into issue1414. commit 7aacd41649d8370d6f4dd34cec68e5268fd268cf Merge: c2337b39a b630110d2 Author: Alan Garny Date: Tue May 22 17:27:15 2018 +1200 Some minor cleaning up. commit b630110d286476ba1e32b34ada0982d3add6cd37 Author: Alan Garny Date: Tue May 22 17:12:46 2018 +1200 Make sure that we hide our busy widget if we couldn'\''t open a remote file. commit fc4a0d7fabab44f3ea2a8e482eeb8d37864f3977 Author: Alan Garny Date: Tue May 22 17:08:36 2018 +1200 Central widget: removed the need for mRemoteLocalFileNames. commit 13bb54d548892d8fd3557cfe37f9fa0b25a6985b Author: David Brooks Date: Tue May 22 17:05:17 2018 +1200 Python: work on running Jupyter kernel without a GUI. commit e14985ab0caba06979cd431f9685e404bcbc436c Author: Alan Garny Date: Tue May 22 16:46:08 2018 +1200 Various work on the Editor widget (#1414). - Put the code for our editor widget’s scroll bar in its own file. - Added a new file for our editor widget itself (EditorWidgetEditorWidget). - Now properly handle the highlighting of all occurrences of a given word, i.e. the highlighting on the scroll bar is updated whenever adding/removing some text, deleting a selection, etc. commit b477574a019afcf09fc328b204792892f789354c Author: David Brooks Date: Tue May 22 15:00:40 2018 +1200 Python: use updated `ipykernel` with fixed PythonQt eventloop. commit f41b4cb70aaec4671f8c349bd427c8c639b011e9 Author: David Brooks Date: Tue May 22 14:47:33 2018 +1200 Python: use our `pythonqt` eventloop in `ipykernel`. commit a6c7a18afc3254ff89e7bd89a7576835da13db2e Author: David Brooks Date: Tue May 22 12:41:35 2018 +1200 Python: work on Jupyter kernel code. commit 95232833bc0d62d2ffd28ded9b58ddea91c08c52 Merge: 30c307773 c2337b39a Author: David Brooks Date: Tue May 22 11:55:18 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 00412d82b67340466cdfef12e0a1f3b549811325 Author: Alan Garny Date: Mon May 21 17:36:34 2018 +1200 Editor widget: update the highlighted lines in our vertical scroll bar when adding text (#1414). commit 3bd3c9f73dec1cac01b733009dba824ddaa2a20b Author: Alan Garny Date: Mon May 21 17:06:44 2018 +1200 Some minor cleaning up. commit f67fbd0ebf83c191587fe38f710be9ec481facdf Author: Alan Garny Date: Mon May 21 17:01:51 2018 +1200 Some minor cleaning up. commit 24f4cd0550fdc590987205dd35fca8f13b8338d7 Author: Alan Garny Date: Mon May 21 16:25:25 2018 +1200 Editor widget: make sure that showing our find/replace widget not only highlight all the occurrences of the current word, but also selects it (#1414). commit 48f6f2ed000d22881fe818183f5641948a2dbc9c Author: Alan Garny Date: Mon May 21 16:08:25 2018 +1200 Some minor cleaning up. commit 41f949ec1bf928cf8a9d6942a3e6a24be6be9297 Author: Alan Garny Date: Mon May 21 15:45:00 2018 +1200 Some cleaning up (#1414). commit 8ce33c57f56148c3be1f79a47cba0fab2b8565ff Author: Alan Garny Date: Mon May 21 12:52:00 2018 +1200 Some minor cleaning up. commit e2ce6063695e3709d926e7672145303ebb8fb899 Author: Alan Garny Date: Mon May 21 11:15:29 2018 +1200 Some minor cleaning up. commit 209e0f32ff4f7c5116b0c3886e9f334ef8802fe5 Author: Alan Garny Date: Mon May 21 11:09:13 2018 +1200 Some minor cleaning up. commit 0bfa89588e10712815c1cf5e25d4d711845c26bb Author: Alan Garny Date: Fri May 18 19:06:10 2018 +1200 Some minor cleaning up (#1414). commit 2a1267da3abc53eb86ded7b0ffbce54ad83a4000 Author: Alan Garny Date: Fri May 18 18:45:45 2018 +1200 Editor widget: make sure that our scroll bar highlighting is properly shifted on Windows and Linux (#1414). commit 650746d3287bd046a174bb6d49d5cce013bfdaa4 Author: Alan Garny Date: Fri May 18 18:44:13 2018 +1200 Moved our highlighting support code from QScintillaWidget to EditorWidget (#1414). commit f1b750aa3716007fe8f6435fb3d6c812d2223834 Author: Alan Garny Date: Fri May 18 18:29:16 2018 +1200 QScintilla widget: take into account that on Windows and Linux, a vertical scroll bar has both a up and down arrow button (#1414). commit b19b1abd8690f63f8dba02909588e02c5716a0ee Author: Alan Garny Date: Fri May 18 17:04:28 2018 +1200 Slight updates to our downloads and what is new pages (#1414). commit f92459f3f8e48576c18b5dac9ad7abb654bf3e4d Author: Alan Garny Date: Fri May 18 17:00:34 2018 +1200 QScintilla editor: simplified our highlighting in the vertical scrollbar (#1414). Indeed, it used to be a bit too much in your face, not least because we can’t draw the slider “above” our highlights (as Chrome does). commit b7cd9521d598f77e09f55ba26e544d8cbad6ecad Author: Alan Garny Date: Fri May 18 16:33:41 2018 +1200 QScintilla widget: added support for the highlighting of lines on the vertical scrollbar (#1414). commit 461779ec8dbe4780674fce6b2851507db2527015 Author: Alan Garny Date: Fri May 18 15:43:36 2018 +1200 QScintilla support: show our cursor position on our vertical scrollbar (#1414). commit fbe649621452b3479fc21b5888314eea0e54ecfd Author: Alan Garny Date: Fri May 18 14:23:51 2018 +1200 Editor widget: make sure that our scrollbars are back to their original position upon highlighting/replacing all (#1414). commit 4d6dca69f98787897f93f27f9604e2eda12197a1 Author: Alan Garny Date: Fri May 18 14:21:55 2018 +1200 Some minor cleaning up (#1414). commit 99fd778d6153468865674a9a853566400cd62605 Author: Alan Garny Date: Fri May 18 14:12:01 2018 +1200 Editor widget: make sure that our position is still the same after some highlighting (#1414). commit 4407897d740e288839595dce3592e0ebae1e695f Author: Alan Garny Date: Fri May 18 11:27:13 2018 +1200 Editor widget: make sure that our highlighting is cleared whenever necessary (#1414). commit 2ed1042ab695f2be8fd49b8583721e98ef4bfff5 Author: Alan Garny Date: Fri May 18 11:17:29 2018 +1200 Editor widget: customised our highlighting a bit (#1414). commit 06a2693d3650754e2c351905d1aa44678e5a6e25 Author: Alan Garny Date: Fri May 18 11:01:04 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file (#1414). commit 395e0fbed43e0444f0290cc3dd5b9131b6266441 Author: Alan Garny Date: Fri May 18 09:58:51 2018 +1200 Some minor cleaning up. commit b8e8e0bde7f9360fca7ac6c65c2401c469f5d362 Author: Alan Garny Date: Fri May 18 09:30:50 2018 +1200 Some minor cleaning up. commit c2337b39a795d1c0783bee25ec3a5fbe79d0362e Merge: 18fdf6fbc 068b6baeb Author: Alan Garny Date: Thu May 17 19:37:38 2018 +1200 Prevent a crash and improved our solution for issue #1637. commit 068b6baebd1997744a127356af49d6e34bbf426f Author: Alan Garny Date: Thu May 17 18:18:22 2018 +1200 macOS: properly handle the exiting of full-screen mode when pressing the Esc key (#1637). commit 7f70207f1db3ce2910bacecbc6f063332d1a1c08 Author: Alan Garny Date: Thu May 17 17:23:54 2018 +1200 Prevent a crash when leaving OpenCOR with a simulation still running. commit 18fdf6fbccb13b7137a35aaceb84119705f17c24 Merge: 111adf29d dbefbe4d0 Author: Alan Garny Date: Thu May 17 16:19:04 2018 +1200 Slight improvement to our MathML tests. commit dbefbe4d00e2eb9a47b83340220a513dbe1adbf7 Author: Alan Garny Date: Thu May 17 15:36:41 2018 +1200 Slight improvement to our MathML tests. commit 111adf29d3a5d53734acc732cb34f359cae01431 Merge: a25012001 d04d7bc74 Author: Alan Garny Date: Thu May 17 15:23:03 2018 +1200 Text-based editors: can now word-wrap an editor'\''s contents (closes #1652). commit d04d7bc7479714fa5965b0c2a31bbf05d0ef95b6 Author: Alan Garny Date: Thu May 17 15:03:56 2018 +1200 Slight update to our what'\''s new page (#1652). commit 444a736f19fc110269b0de8b14b549404652773d Author: Alan Garny Date: Thu May 17 15:02:15 2018 +1200 Slight update to our downloads page (#1652). commit 31aafda59b8eaebb995ae16d9f118ad9cbf0b2d1 Author: Alan Garny Date: Thu May 17 14:59:58 2018 +1200 Text-based editors: remember about word-wrapping (#1652). commit 73b9cdd7fddead7adc7e3e8ce7752de2dc7936bd Author: Alan Garny Date: Thu May 17 14:59:21 2018 +1200 Editing view: updated our French translations (#1652). commit 7019ca0d3a71f49abafda0732d746fd6d92808fb Author: Alan Garny Date: Thu May 17 14:58:37 2018 +1200 Some minor cleaning up. commit 694d0431ff643512f12c6997583107e74ad8d4ba Author: Alan Garny Date: Thu May 17 14:38:18 2018 +1200 Text-based editors: can now word-wrap an editor'\''s contents (#1652). commit a25012001d6390cfe2bc1a28d5ab5bee14810916 Author: Alan Garny Date: Thu May 17 13:42:02 2018 +1200 Windows: prevent a warning when using LLVM+Clang. commit 13207553ea35b5c40a34b3a283ba04446577c97f Merge: e361f2703 3ed7b35b1 Author: Alan Garny Date: Thu May 17 12:59:30 2018 +1200 LLVM+Clang: upgraded to version 6.0.0 (closes #1552). commit 3ed7b35b1bcc64a4e3d9dd2251161215ff816954 Author: Alan Garny Date: Thu May 17 11:58:48 2018 +1200 Stopped using Travis CI. Indeed, we now have everything set up and working nicely on Jenkins. Not only that, but issue #1552 is building/testing fine locally on Jenkins, but not on Travis CI (though our Docker Ubuntu 16.04 LTS) and I am really not sure why. I spent a full day trying to figure out, but to no avail. So, since Jenkins is working (and also build/test on Windows and macOS), we might as well only use that, not to mention that we can rely ccache on Jenkins, thus making our builds faster. commit e769589a0331e06b8b4bdad3c3630d090d18a700 Author: Alan Garny Date: Thu May 17 09:21:58 2018 +1200 Some minor cleaning up. commit 35cb856f18520cf83b38324e4b956b157896bd04 Author: Alan Garny Date: Thu May 17 09:19:50 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit 30c3077733548196e548feb49eaa18f3eef3bf3c Author: David Brooks Date: Wed May 16 20:33:06 2018 +1200 Python: actually package runtime libraries for Linux. commit b6fc9113e86d502d9c4090b1020ad76612a86cb9 Author: David Brooks Date: Wed May 16 19:40:43 2018 +1200 Linux: make sure Python library can be found by dynamically loaded modules. This was originally commits b108e853206, e1c9bedffa0 and 7832a95e3f6, which were lost as a result of merging. commit 8e6cf78ed3740ce5b8721ae550b8afbd3b3c686a Author: Alan Garny Date: Wed May 16 16:51:42 2018 +1200 Built a special version of LLVM+Clang to see whether this is the cause of our problems on Travis CI. commit 4f69cd014495087482dd04bac84d4996cfb96135 Author: Alan Garny Date: Wed May 16 15:19:29 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit fa7a4b62c85286b78f20b3e3bd0586d45cf094a2 Author: Alan Garny Date: Wed May 16 14:45:47 2018 +1200 Travis CI: optimising the packages we need on Ubuntu. commit ffe25c8e6cba2dd539e691c854b7dddd622e8b4a Author: Alan Garny Date: Wed May 16 14:11:11 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit 05e42e91c09d272d956058b8dae4f667c681ee5b Author: Alan Garny Date: Wed May 16 12:22:26 2018 +1200 Travis CI: optimising the packages we need on Ubuntu. commit b30eb743bd42757e716d78a5b53c4bb20e88f7d7 Author: Alan Garny Date: Wed May 16 10:15:32 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit 2970f1c2690310b8515f8a29c24ea5f8988d73c8 Author: Alan Garny Date: Wed May 16 09:19:16 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit 1d5582aba6861a96d317f4471137aac6e98e5238 Author: Alan Garny Date: Tue May 15 23:38:35 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit 4efc7514b2564fca7f60024ea3f73a4d8c84fa34 Author: Alan Garny Date: Tue May 15 22:57:17 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit f684da10a6d18f3ccb0e3ad79f5f853d111c4a85 Author: Alan Garny Date: Tue May 15 22:07:04 2018 +1200 Travis CI: some tests to understand why things are now failing...!? commit e2cf0a4a2cf99cdd8867c2a6298ddb7f029a065f Author: Alan Garny Date: Tue May 15 22:06:37 2018 +1200 Travis CI: upgraded to Qt 5.9.5. commit 9d408ad1c4ff46fb8a36986d7ed6488c8153f58f Author: Alan Garny Date: Tue May 15 20:05:41 2018 +1200 LLVMClang package: new Windows binaries (#1552). commit 2c48184dd9bec61ec01eb8f5e456430b7eb59e79 Author: Alan Garny Date: Tue May 15 16:50:00 2018 +1200 Slight update to our downloads page (#1552). commit 77b8f0d1a52f6eeefafcdf511137d20391197f6b Author: Alan Garny Date: Tue May 15 16:47:49 2018 +1200 Simulation Experiment view: make sure that mGraphPanelsWidgetSizes gets properly initialised upon export a SED-ML file / COMBINE archive. commit edec2ba23f1db742c45f02b6ad07b7e9e1bd72f5 Author: Alan Garny Date: Tue May 15 16:44:06 2018 +1200 Some minor cleaning up. commit f2d8f9a34d58ed456e71aa2e28882d2df2213ae9 Author: Alan Garny Date: Tue May 15 14:58:14 2018 +1200 Stop building on LLVM+Clang (#1552). commit c994a6e2ffa09064104432f219e225cfc234aea4 Author: Alan Garny Date: Tue May 15 14:39:50 2018 +1200 LLVMClang package: new Linux and macOS binaries (#1552). commit 8c0b5a3bbb1b95ecde94b00870b788d667e3c372 Author: Alan Garny Date: Tue May 15 14:21:55 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit 68993ad1a5749865bdf5a8045b6342e566e3365f Author: Alan Garny Date: Tue May 15 09:31:33 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit bbad5004d0abff0c2e2701b90848ca3b67eb4a71 Author: Alan Garny Date: Tue May 15 09:26:53 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit 5d651b90d59279ed4b360cf981bd4c2180283dfc Author: Alan Garny Date: Mon May 14 23:36:02 2018 +1200 LLVMClang package: upgraded to version 6.0.0 (#1552). commit 2f3df74c634d093b06571e440972207ceb2d7396 Author: Alan Garny Date: Mon May 14 23:35:24 2018 +1200 Only build LLVM+Clang (#1552). commit e361f270315f98c78f52d859407990c698b07f2b Merge: 38f395b87 53d91e911 Author: Alan Garny Date: Mon May 14 19:19:07 2018 +1200 CellML Text view: keep track of a CellML file’s documentation (closes #1642). commit 53d91e9110d438870c40eb310e5cb584a9e9d2c5 Author: Alan Garny Date: Mon May 14 17:58:00 2018 +1200 Slight update to our downloads page (#1642). commit 4fe92aa0fa9f8744976855699df3fe3315fbd59b Author: Alan Garny Date: Mon May 14 17:17:26 2018 +1200 Slight update to our downloads page (#1642). commit 6918a75b980c41c89eeb1ed91fe6d24528a47333 Author: Alan Garny Date: Mon May 14 17:15:35 2018 +1200 CellML Text view: keep track of a CellML file’s documentation (#1642). commit 38f395b8784445ad2d0569233b94f203ab1bea14 Merge: d227018b9 d7823d236 Author: Alan Garny Date: Sun May 13 10:36:53 2018 +1200 Prevent OpenCOR from crashing when selecting Tools | Reset All. commit d7823d236e3e680328fe842dacc9f709c76a9e62 Author: Alan Garny Date: Sun May 13 09:56:10 2018 +1200 Prevent OpenCOR from crashing when selecting Tools | Reset All. It looks like this might (somehow?) be related to our use of the new signal/slot mechanism? At least, that seems to be the only difference between the 17 March and 23 April snapshots when it comes to MainWindow::updateDockWidgetsVisibility(). commit d227018b9eff0cba30ab9af76818832efce53317 Author: Alan Garny Date: Sat May 12 22:56:07 2018 +1200 Some minor cleaning up. commit b372a3435aab821c660276d16243b7cc39a028f9 Merge: 8d953e1ae 2ea0a3f2c Author: Alan Garny Date: Sat May 12 21:14:39 2018 +1200 QtWebKit package: statically linked JPEG, PNG and ZLIB on Linux and macOS. commit 2ea0a3f2c1b67b99c5a06930e4fdc306462b4ab6 Author: Alan Garny Date: Sat May 12 19:49:35 2018 +1200 Some minor cleaning up. commit e4e881b1efabf26e2a771ea88a5a2ac2a382d775 Author: Alan Garny Date: Sat May 12 19:08:26 2018 +1200 Stop building only the QtWebKit package. commit d21e353e96563cfa49c6f1f4d8ab0e9332c27bd9 Author: Alan Garny Date: Sat May 12 19:06:57 2018 +1200 QtWebKit package: new Windows binaries. commit 46bd014d72ec050beece0ba3849f14b5507a56ae Author: Alan Garny Date: Sat May 12 13:28:40 2018 +1200 QtWebKit package: new Linux and macOS binaries. commit e4e20b3c9faee24ef8fbd9dac3d2943984c3be24 Author: Alan Garny Date: Sat May 12 12:45:29 2018 +1200 Some minor cleaning up. commit 3ea19790e13bb0145953cdab194adf855b70f8f0 Author: Alan Garny Date: Sat May 12 11:42:45 2018 +1200 Some minor cleaning up. commit b5108d95553f9b50689780420b2d2d89b8220366 Author: Alan Garny Date: Sat May 12 11:10:11 2018 +1200 QtWebKit package: use -fPIC for JPEG, PNG and ZLIB (on Linux and macOS). commit b6936abb2d1f5efd6908285190e62d438bc93390 Merge: 955ba6cd9 b859fc96a Author: Alan Garny Date: Sat May 12 11:09:06 2018 +1200 Merge branch '\''master'\'' of https://github.com/agarny/opencor. commit 955ba6cd94fdfcc80f8c0a8769168c0b97f69918 Author: Alan Garny Date: Sat May 12 11:08:38 2018 +1200 Some minor cleaning up. commit b859fc96a1b377e891c42388ea2abecfa6b3c837 Merge: a803ba8cd ec4d30219 Author: Alan Garny Date: Sat May 12 10:44:39 2018 +1200 Merge branch '\''master'\'' of https://github.com/agarny/opencor commit a803ba8cd98e2cf4905536707f52faa99ab3b6aa Author: Alan Garny Date: Sat May 12 10:43:11 2018 +1200 Some minor cleaning up. commit ec4d3021934c58fcfedeb8969f952ea2aadb0424 Author: Alan Garny Date: Sat May 12 10:27:30 2018 +1200 QtWebKit package: have it depend on our copy of JPEG, PNG and ZLIB on Linux and macOS. commit 49bd7f437cb8f72556a1bcbb0c0a38211df7622e Author: Alan Garny Date: Sat May 12 08:58:42 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 50f3826a4fb776716859f9950c85b9e0757e8e9c Author: Alan Garny Date: Fri May 11 18:21:04 2018 +1200 QtWebKit package: statically link ZLIB. commit 9befc97d3a812f29e027db56748cc650c1366794 Author: Alan Garny Date: Fri May 11 17:53:17 2018 +1200 QtWebKit package: statically link libpng. commit 3229db239538481fa2fb2f0d13d111b333e662b1 Author: Alan Garny Date: Fri May 11 15:53:47 2018 +1200 QtWebKit package: statically link libjpeg. commit 43b85bd0d614cc98aac6d336cd0abfee1145c28a Author: Alan Garny Date: Fri May 11 15:46:27 2018 +1200 QtWebKit package: slight update to our README.rst file. commit f38226413e53b2623245e775e6df008a87478de7 Author: Alan Garny Date: Fri May 11 15:09:26 2018 +1200 QtWebKit package: slight update to our README.rst file. commit b0c204ea97fce3531f6ce0c1416ef32fc96cb383 Author: Alan Garny Date: Fri May 11 11:24:26 2018 +1200 Some minor cleaning up. commit c8c591d75f0b15c20eca39c5e2cf5ff703eaf90f Author: Alan Garny Date: Fri May 11 09:10:16 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 0a195c2309d0b028880849d36984abf4dba9e53a Author: Alan Garny Date: Fri May 11 09:01:58 2018 +1200 Only build the QtWebKit package. commit ae2786e132b815abd16cd5b0bc1f5664bb2f5962 Author: Alan Garny Date: Thu May 10 17:41:25 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 8d953e1aee69612bffb1f9ffd03bbbfd46bae867 Author: Alan Garny Date: Thu May 10 16:28:14 2018 +1200 QtWebKit package: updated our macOS binary. commit 3a3a1e8f05f5c667bcee75433c59a4fdb4b2bba2 Merge: b1de3d6bd a76a8f80b Author: Alan Garny Date: Thu May 10 15:39:10 2018 +1200 SUNDIALS: upgraded to version 3.1.1 (closes #1643). commit a76a8f80b06896d6ea53f8de2b6bd86af452e1e9 Author: Alan Garny Date: Thu May 10 15:08:11 2018 +1200 Don'\''t build the SUNDIALS package only (#1643). commit 68dc3c4c4ccde23cb04f4662533e1057299c6f31 Author: Alan Garny Date: Thu May 10 15:06:48 2018 +1200 Slight update to our downloads page (#1643). commit ce680617ed4baba0701cd96ae6f43b0f622b0cfe Author: Alan Garny Date: Thu May 10 15:05:16 2018 +1200 SUNDIALS package: new binaries (#1643). commit 61d36104f8e924ddea14565a3628e6f67e57f758 Author: Alan Garny Date: Thu May 10 14:58:16 2018 +1200 SUNDIALS package: upgraded to version 3.1.1 (#1643). commit 6066f9c6dd2bd3403bf04a3bd1f50891d1cc1dbd Author: Alan Garny Date: Thu May 10 14:53:45 2018 +1200 SUNDIALS package: upgraded to version 3.1.1 (#1643). commit 6443a4b98870775560f7764eb45c1fc5dd79df49 Author: Alan Garny Date: Thu May 10 14:53:26 2018 +1200 Only build the SUNDIALS package (#1643). commit b1de3d6bd93e8186bafc542d4b7a1c7f4ea1cbec Merge: 83ea0188a 116f08456 Author: Alan Garny Date: Thu May 10 14:27:26 2018 +1200 Some minor changes needed to get OpenCOR to build on Ubuntu 18.04 LTS. commit 116f084564496daa721effceef8661360b600345 Author: Alan Garny Date: Thu May 10 13:50:04 2018 +1200 Properly deploy some system libraries on Linux. commit 11a75c15f353518d316317681acbcb7faf2796a5 Author: Alan Garny Date: Thu May 10 11:43:57 2018 +1200 Make sure that OpenCOR itself uses RPATH rather than RUNPATH on Linux. commit 608befcb9d6021c5121a0a668639113957ae1515 Author: Alan Garny Date: Thu May 10 11:27:10 2018 +1200 Make sure that our plugins use RPATH rather than RUNPATH on Linux. commit 3faee38fec527dcda5749ba63704d5870f3a8582 Author: Alan Garny Date: Wed May 9 20:12:16 2018 +1200 Prevent a deprecated warnings for the CellML API on Ubuntu 18.04 LTS. commit 2a62ea024548f89db086938a1552fe4e96c4e923 Author: Alan Garny Date: Wed May 9 19:40:31 2018 +1200 Renamed ULLONG_WIDTH to AttributeNumberWidth since it'\''s defined by gcc on Ubuntu 18.04 LTS. commit 83ea0188ae5a007439cb9f7274dbcc117678570d Merge: f361f59b5 9e9eef6c9 Author: Alan Garny Date: Wed May 9 18:53:49 2018 +1200 Linux deployment: fixed an issue with version 55 of ICU being wrongly needed on some Linux systems (closes #1627). commit 9e9eef6c99bbf99c15b736091be411adb14180d4 Author: Alan Garny Date: Wed May 9 17:49:36 2018 +1200 Slight updates to the Oxygen library. commit f1434aa9b76c4ec054bb970737247f1a072652de Author: Alan Garny Date: Wed May 9 17:41:04 2018 +1200 Travis CI: now need JPEG and PNG (#1627). commit 2582d2ab4b3490a88476b68922249bf47677dd03 Author: Alan Garny Date: Wed May 9 17:17:43 2018 +1200 Slight update to our downloads page (#1627). commit bfb0112abde46bd27d9505abbf13c30a411bb067 Author: Alan Garny Date: Wed May 9 17:12:56 2018 +1200 Deploy JPEG and PNG on Linux (#1627). commit 22be2c13feeada02eec32ebb8480dfcd5ac183f7 Author: Alan Garny Date: Wed May 9 15:53:53 2018 +1200 Some minor cleaning up. commit c8c6b71f59c22c0564dc3ef924c017eaed0c4613 Author: Alan Garny Date: Wed May 9 15:30:01 2018 +1200 Don'\''t only build ICU and QtWebKit anymore (#1627). commit 99be0258dabc725b5084374e7fb4df15d65aa388 Author: Alan Garny Date: Wed May 9 14:58:45 2018 +1200 Some minor cleaning up. commit 80cf809f8203011031cb8164a0529efb0b03b624 Author: Alan Garny Date: Wed May 9 14:57:44 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 46ade0e707d4c89c3fe00f05f39568528b00c263 Author: Alan Garny Date: Wed May 9 14:41:27 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 3328dc4d852f3858c38ac294201522e0bc839eb6 Author: Alan Garny Date: Wed May 9 14:05:11 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 4eccef3969c841749af9d6db91bad9bd24e34dca Author: Alan Garny Date: Wed May 9 13:27:44 2018 +1200 Some minor cleaning up. commit 19273baca4c70e58514d2912898e2e531a75771d Author: Alan Garny Date: Wed May 9 11:49:02 2018 +1200 Revert part of commit 6640946. commit 6640946656aa85d7569e85ef65335900ebbf190f Author: Alan Garny Date: Wed May 9 11:37:31 2018 +1200 Make sure that ICU is handled before QtWebKit (#1627). commit 6a95bda16a1769e53dc34d41ba11a2f204a9d16c Author: Alan Garny Date: Wed May 9 11:36:19 2018 +1200 Some minor cleaning up. commit 457243c89cad47c41abdcf9c7e05284cae199877 Author: Alan Garny Date: Tue May 8 17:55:10 2018 +1200 QtWebKit package: fixed a small problem with the CMakeLists.txt file (#1627). commit b0def83ed8c276c6329c4520464e40a403b032f5 Author: Alan Garny Date: Tue May 8 17:47:22 2018 +1200 QtWebKit: new Linux binaries (#1627). commit 50bdfd9f4bc980884adbca07663d10513b1b355e Author: Alan Garny Date: Tue May 8 17:41:11 2018 +1200 Stop building QtWebKit only (#1627). commit c3e3816d159f2605091672883592a07d8d33537d Author: Alan Garny Date: Tue May 8 17:40:01 2018 +1200 QtWebKit: new Linux binaries (#1627). commit 79c2bc7a66a6c6c77cb5686c04bb4d63aa40ff75 Author: Alan Garny Date: Tue May 8 10:40:13 2018 +1200 Some minor cleaning up. commit fa1b3d872b82918f6545ae36be38403849458943 Author: Alan Garny Date: Tue May 8 07:42:01 2018 +1200 QtWebKit: new Windows and macOS binaries (#1627). commit b749ba632fe5d2bc46369bdaaa6c32473aac8546 Author: Alan Garny Date: Mon May 7 19:29:11 2018 +1200 QtWebKit package: use our copy of ICU on Linux (#1627). commit c21e2e0cccb05339e6174d35c5016192b5cdfb17 Author: Alan Garny Date: Mon May 7 14:11:33 2018 +1200 Some minor cleaning up. commit 48bfa322e85fcd217c1940ec4d17c0611a7b3037 Author: Alan Garny Date: Mon May 7 13:51:05 2018 +1200 Linux: make sure that we build/retrieve ICU before building/retrieving QtWebKit (#1627). commit 8c596e554b6d42c8bb742401f4ba361dc3d45323 Author: Alan Garny Date: Mon May 7 10:30:10 2018 +1200 Revert "Some minor cleaning up." This reverts commit b2fa258764dc2cb90f0e142cdc957b669fbe7362. Argh, we actually need it for our OpenCOR-specific version of QtWebKit. It’s just that I made a mistake when creating the `v5.212.0-alpha2-72cfbd7` release by using the `5.212` target rather than our `opencor` one. commit b2fa258764dc2cb90f0e142cdc957b669fbe7362 Author: Alan Garny Date: Mon May 7 10:21:37 2018 +1200 Some minor cleaning up. Not sure why GIT_TAG was defined on Windows and, indeed, CMake told us that this manually-specified variable was not used by the project. commit 55dfbfbbb3fdefc8108dcd77c66cc42562228193 Author: Alan Garny Date: Mon May 7 10:05:52 2018 +1200 Using the latest commit of QtWebKit (#1627). commit 3ce0e167ba58c82b34dedc88e0280e4c47b4ca5f Author: David Brooks Date: Sun May 6 13:37:21 2018 +1200 Python: really don'\''t update files in `__pycache__`... commit 7076296482ddec35661fb3301a70bc6d96dba995 Author: David Brooks Date: Sun May 6 10:07:49 2018 +1200 Graphs: don'\''t set a line'\''s in SED-ML file if the colour is invalid/missing. commit ff44e1ac7e6ccdcc0113e5b7aae1638e5ad5c19c Author: David Brooks Date: Sat May 5 21:39:57 2018 +1200 Python: don'\''t decRef null array pointers (dbrnz/opencor#15). commit 9c694f1d5e6b2691f18f5ce809f7702a28486b41 Merge: d9eb8b134 f361f59b5 Author: David Brooks Date: Sat May 5 20:43:16 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit d9eb8b1342b2411baff56279f8f741f366b587e8 Author: David Brooks Date: Sat May 5 20:41:51 2018 +1200 Python: make sure our simulation run event loop quits. Possibly because we are running in the application'\''s main thread, the `exec()` of the local event loop was not always exiting when we called the loop'\''s quit slot. Emitting a signal to quit the loop is the proper way to do so. commit a821a3d80e2f7af6a21331173a9c446e27f691f9 Merge: 9376fd5f1 f361f59b5 Author: Alan Garny Date: Fri May 4 18:06:16 2018 +1200 Merge branch '\''master'\'' into issue1627. commit 66bf995e40cb930572352eab5a03d0845d6222fb Merge: e0ac8f0cc f361f59b5 Author: Alan Garny Date: Fri May 4 18:05:34 2018 +1200 Merge branch '\''master'\'' into issue1544. commit f361f59b5f05b582b9ef2e9d81b826246408463b Author: Alan Garny Date: Fri May 4 18:03:10 2018 +1200 QtWebKit library: prevent a warning from CMake. commit 9376fd5f1cf03ab4a78ff4d47b0e9cd1e301bf6a Author: Alan Garny Date: Fri May 4 18:01:18 2018 +1200 QtWebKit library: prevent a warning from CMake (#1627). commit 9c7641fd66bd437beabbdfa4f0f6d2a64534f45f Author: Alan Garny Date: Fri May 4 17:35:03 2018 +1200 Only build QtWebKit (#1627). commit 13b7454f142acaee0f2b98544e7d56ae6e8af3c7 Author: Alan Garny Date: Fri May 4 15:29:41 2018 +1200 For testing Jenkins. commit 0fe45e9e0870472b1670b37f0051e4530cf91b79 Author: Alan Garny Date: Fri May 4 15:29:32 2018 +1200 For testing Jenkins. commit 3a5db944e730c7d7062a4dbb5983b832765b13c5 Author: Alan Garny Date: Fri May 4 15:21:20 2018 +1200 For testing Jenkins. commit 4c864892fbe4031686a3b0608ae24bf6aaee1379 Author: Alan Garny Date: Fri May 4 15:21:05 2018 +1200 For testing Jenkins. commit 72499799ef074a3b748122e9b9514bf4da063a84 Merge: d4c04eed4 25c5801b8 Author: Alan Garny Date: Fri May 4 15:11:33 2018 +1200 Merge branch '\''master'\'' into issue1627. commit e0ac8f0cc102b49e051632ddc35c70f57ebb474a Merge: 874367573 25c5801b8 Author: Alan Garny Date: Fri May 4 15:11:01 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 25c5801b85956d8e426c022cc5f022301b9a01d9 Author: Alan Garny Date: Fri May 4 15:09:17 2018 +1200 Some minor cleaning up. commit d4c04eed4304714c0ff5882d695d067e26b63379 Merge: b5fdf70bf 9a7a3acbc Author: Alan Garny Date: Fri May 4 14:42:14 2018 +1200 Merge branch '\''master'\'' into issue1627. commit 8743675738a1aed9640fc38a685b3de09be066be Merge: ee6f23847 9a7a3acbc Author: Alan Garny Date: Fri May 4 14:41:34 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 9a7a3acbcb1a662206aa11f4836c12529aa30ba2 Merge: 2952b2d3f 90c5ab638 Author: Alan Garny Date: Fri May 4 14:40:33 2018 +1200 Some minor cleaning up. commit b5fdf70bf76e004acdddd632504bffe3cd29cb8f Author: Alan Garny Date: Fri May 4 14:10:32 2018 +1200 Some minor cleaning up. commit 90c5ab63890d748bd3d06420e1007d8c6e38af50 Author: Alan Garny Date: Fri May 4 14:08:45 2018 +1200 Some minor cleaning up. commit 8b2c5e09cfce147a52596548ddb08686d68f846d Merge: 2443c57ad 2952b2d3f Author: David Brooks Date: Fri May 4 13:19:27 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 1c40596846950890b2afbfd38ca36704165c9882 Merge: ff9813360 2952b2d3f Author: Alan Garny Date: Fri May 4 11:09:15 2018 +1200 Merge branch '\''master'\'' into issue1627. commit ee6f23847c244f352f7cf3df1a8428662ec9f82d Merge: 517383611 2952b2d3f Author: Alan Garny Date: Fri May 4 11:08:37 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 2952b2d3f42eb41fc12221c3b1de1dca32b6d827 Merge: 657e34f0d 5b16f9b3a Author: Alan Garny Date: Fri May 4 11:07:27 2018 +1200 Fixed various reproducible crashes (closes #1630). commit 5b16f9b3a8809d20d36e4b9017c5d0ad088a1d22 Author: Alan Garny Date: Fri May 4 10:29:15 2018 +1200 Some minor cleaning up. commit f87fedcd67a61ac5af6fda1e38390cb27ad89712 Author: Alan Garny Date: Fri May 4 10:18:15 2018 +1200 Some minor cleaning up. commit 7a4752a237188d12f2af027a18f118a8bb33b13d Author: Alan Garny Date: Fri May 4 10:17:20 2018 +1200 Some cleaning up. In the end, because of what we did for issue #1630, we don’t need to decide whether we want an elapsed time to be computed or not when asking for a simulation to stop. commit 39d341655117ab2f87a883aae3f8a3fb2fd4f7ee Author: Alan Garny Date: Fri May 4 10:11:51 2018 +1200 Some minor cleaning up. commit 8e4b0c25503fecea99a56dc7aadbda9379c06d8e Author: Alan Garny Date: Fri May 4 09:52:37 2018 +1200 Simulation Experiment view: prevent the second crash in issue #1630. commit b7a9f623a9a73d61cad960268f6b30e714b54919 Author: Alan Garny Date: Thu May 3 18:48:32 2018 +1200 Some minor cleaning up. commit 9e8e58d563021ffe4f260859775c759d0472216e Author: Alan Garny Date: Thu May 3 18:03:49 2018 +1200 Some minor cleaning up. commit 60f8b53dcb2d822ee09ed843fc457e7aadf3579e Author: Alan Garny Date: Thu May 3 18:03:15 2018 +1200 Some minor cleaning up. commit fe30413665626a08331371478d5941df45e3822f Author: Alan Garny Date: Thu May 3 18:02:52 2018 +1200 Simulation Experiment view: prevent the fourth crash in issue #1630. commit 40bd885ce0e687587a26418f9dc047eea42b7e9b Author: Alan Garny Date: Thu May 3 17:59:17 2018 +1200 Some minor cleaning up. commit ce19ce381c272fdfbe9d0cfc8eccb319a0a38749 Author: Alan Garny Date: Thu May 3 16:21:45 2018 +1200 Simulation support: actually wait for our worker thread to be done when asking our simulation to stop (#1630). commit 055ac53356aa7d4539b146fb911e5d750d3b80f8 Author: Alan Garny Date: Thu May 3 15:12:07 2018 +1200 Simulation Experiment view: prevent the third crash in issue #1630. commit 7d768fc16b3cd3a55189b3ecae7fc19f1534ac92 Author: Alan Garny Date: Thu May 3 15:03:10 2018 +1200 Simulation Experiment view: make sure that a simulation is stopped when a saved file is to be considered as reloaded (#1630). commit a309360a5461bdf9eeeea28015cdbcc98fc3d397 Author: Alan Garny Date: Thu May 3 13:29:28 2018 +1200 CellML support: have `CellmlFile::runtime()` always return a brand new runtime (#1630). The idea is that whoever calls `CellmlFile::runtime()` is responsible for deleting that runtime once it’s done with it. commit 788fb8bafb548718d836a7025fe4dcbb99a83c7b Author: Alan Garny Date: Thu May 3 11:35:56 2018 +1200 Removed our Simulation interface since we don'\''t need it anymore (thanks to commit bd5ab3f; #1630). commit bb86b4c5530ec85e254fff36792d6aca2eedb0be Author: Alan Garny Date: Thu May 3 11:29:23 2018 +1200 Some minor cleaning up. commit 2b522b444213aaa4cb5c69f871d36ca9a09a0221 Author: Alan Garny Date: Thu May 3 11:28:27 2018 +1200 Removed our Simulation interface since we don'\''t need it anymore (thanks to commit bd5ab3f; #1630). commit f4fd1c73ed73e019c465e25fa7dd1738956679a8 Author: Alan Garny Date: Thu May 3 11:25:33 2018 +1200 Removed our Simulation interface since we don'\''t need it anymore (thanks to commit bd5ab3f; #1630). commit bd5ab3f99b699887c5e5a97fa7e84b63a148ab0e Author: Alan Garny Date: Thu May 3 11:17:40 2018 +1200 CellML support: have `CellmlFile::runtime()` always return a brand new runtime (#1630). The idea is that whoever calls `CellmlFile::runtime()` is responsible for deleting that runtime once it’s done with it. commit 283808ba5040dd5a385ab4eeefa48d66b9533b24 Author: Alan Garny Date: Thu May 3 10:51:37 2018 +1200 Some minor cleaning up. commit a7ff1b7cbee63acfec1810b91be4be34a89b329d Merge: 71345a009 657e34f0d Author: Alan Garny Date: Thu May 3 10:28:01 2018 +1200 Merge branch '\''master'\'' into issue1630. commit ff981336099bbe6417d061897ead2f0568cb616a Merge: f07f82499 657e34f0d Author: Alan Garny Date: Thu May 3 10:27:22 2018 +1200 Merge branch '\''master'\'' into issue1627. commit 517383611df2ce32c1f3de0ec70493dcdd4de106 Merge: 4cbe06e4d 657e34f0d Author: Alan Garny Date: Thu May 3 10:26:42 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 657e34f0d4e9ddb4f34662988f524087b449e45c Merge: b245b999a 9900b4ba7 Author: Alan Garny Date: Thu May 3 10:25:44 2018 +1200 macOS: added support for exiting full-screen mode when pressing the Esc key (closes #1637). commit 71345a009eeb56f7a6088ae57f18c2191cb39af5 Author: Alan Garny Date: Thu May 3 10:13:19 2018 +1200 Some minor cleaning up. commit 9900b4ba7a8ad8adf7cd7a6cd8f191322e0f661f Author: Alan Garny Date: Thu May 3 09:44:55 2018 +1200 Slight update to our downloads page (#1637). commit e3f8fa2f7b6270dbed3d36c6d8fd06fd517840e8 Author: Alan Garny Date: Thu May 3 09:43:36 2018 +1200 macOS: added support for exiting full-screen mode when pressing the Esc key (#1637). commit a6ca92678bda36056699c01af60a837ab53f211b Author: Alan Garny Date: Wed May 2 18:03:03 2018 +1200 Simulation Experiment view: don’t consider a SED-ML file as modified under certain conditions (#1626). commit 609b4d5cb341f9e0d23e8f3f6e7d1da1ad1059e5 Author: Alan Garny Date: Wed May 2 15:31:00 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours. Indeed, when running the model in issue #1630, the X axis of the first graph panel was flashing on macOS for a bit before becoming "stable", due to our call to xScaleWidget->setMinBorderDist(0, 0). So, we had to find another way of doing things without that call... commit 0ba67a863e42b14b3bf020b5aa5bd7eb9993f4fb Author: Alan Garny Date: Wed May 2 14:39:07 2018 +1200 Revert "Graph Panel widget: improved the alignment of a graph panel with its neighbours on macOS." This reverts commit c927305cc668a4b5aeb1c05f5ae127db59f2abf6. commit 2443c57ad650b4511b16f69c3b168a9a3cc239ea Merge: adffe9cde b245b999a Author: David Brooks Date: Wed May 2 13:10:06 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit adffe9cde78fd25887b7acb5ade7e3e830dc35ca Author: David Brooks Date: Wed May 2 13:02:24 2018 +1200 Graphs: use an invalid colour value to indicate that we calculate the plot line colour. commit c927305cc668a4b5aeb1c05f5ae127db59f2abf6 Author: Alan Garny Date: Wed May 2 12:51:26 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours on macOS. Indeed, when running the model in issue #1630 on macOS, the X axis of the first graph panel was flashing for a bit before becoming "stable". This was due to us calling xScaleWidget->setMinBorderDist(0, 0), which unlike our call to yScaleDraw->setMinimumExtent(0.0), we don’t seem to need to properly align our graph panels (at least, on macOS). commit af9451ef86e8c3c11d2d6c81e2c2fc2f4b2d6d13 Author: Alan Garny Date: Wed May 2 12:48:27 2018 +1200 Revert "Graph Panel widget: improved the alignment of a graph panel with its neighbours." This reverts commit 9920ff9a07c903c8900154eb68ca1eb9702bee5d. commit 9920ff9a07c903c8900154eb68ca1eb9702bee5d Author: Alan Garny Date: Wed May 2 12:01:52 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours. Indeed, when running the model in issue #1630, the X axis of the first graph panel was flashing for a bit before becoming “stable”. This was due to us calling xScaleWidget->setMinBorderDist(0, 0), which unlike our call to yScaleDraw->setMinimumExtent(0.0), we don’t seem to need to properly align our graph panels. commit 3b86e142f58bfcd45b9e582e495233188ee2167c Author: David Brooks Date: Wed May 2 11:00:59 2018 +1200 Graphs: keep different graph colours when info is updated. commit 94b0dc5c863613e1b6166fdb53ca6174289af474 Author: David Brooks Date: Wed May 2 10:59:22 2018 +1200 Python: don'\''t look in `__pycache__` directory when updating scripts. commit 74c127ff82bb88c6fdf0ac4299e2159072a62718 Author: Alan Garny Date: Wed May 2 09:06:23 2018 +1200 Simulation Experiment view: only update our progress bar or our tab icon if needed (#1630). commit a6b822a0b3350214360fcbae89c132fa01c7f359 Author: Alan Garny Date: Tue May 1 17:32:10 2018 +1200 Simulation support: properly handle the generation of elapsed time (#1630). commit 70e44656a7cd1b5f04d406a2dc0c80530210baf6 Author: David Brooks Date: Tue May 1 17:28:14 2018 +1200 Python: skip sub-directories when updating scripts. commit e0679318a5af32bf3b20b8062e1d09c27fde0d2b Author: David Brooks Date: Tue May 1 15:23:19 2018 +1200 Python: re-enable gradient calculation code. commit ae461947e28ed584570b2f73b857f1ceaf8ef2df Author: Alan Garny Date: Tue May 1 17:05:04 2018 +1200 Simulation Experiment view: a simulation shouldn'\''t be stopped by the Simulation Experiment view (#1630). When a simulation needs to be stopped, it should be stopped before doing anything else (e.g. reloading a file) since it’s run in its own thread. So, anything else will result in a potential crash of OpenCOR. This is the reason we now stop a simulation from within our central widget. commit e5753716a9342478b080c83978038c26798ed0f7 Author: Alan Garny Date: Tue May 1 16:12:52 2018 +1200 Simulation support: we should really not have to reset our various arrays in SimulationData::deleteArrays(). Indeed, we should only ever come here once, so… commit 72f0c7eb65f55a9b09720119b6ac7405c98a842a Author: Alan Garny Date: Tue May 1 16:10:28 2018 +1200 Simulation support: make sure that we have a data store before returning our number of runs (#1630). This is needed, for example, when a simulation was running and then we reloaded a SED-ML file as a result of its corresponding CellML file having been modified. commit 9b9e72103a34e7882a59eefb47b33577da2ad90f Author: Alan Garny Date: Tue May 1 15:56:15 2018 +1200 Simulation support: simplified our Simulation interface and put back our handling of the File Handling interface (#1630). Indeed, the only thing we need to do (and should be doing) as soon as possible is stop the simulation. Once this is done, we can retrieve our file details when a SED-ML/CellML file has been reloaded. To retrieve our file details just after stopping a simulation will result in our file details being wrong since a SED-ML/CellML file will have reloaded yet. commit 1c25d8151dc13ea355e30fd754143b44d2981265 Author: David Brooks Date: Tue May 1 14:56:36 2018 +1200 Python: update starting/ending point and interval when changed in Python. commit 2e3efffb311f2717100ffaaa2dd5fba1e7587299 Merge: c7ac2deab b245b999a Author: Alan Garny Date: Tue May 1 14:29:29 2018 +1200 Merge branch '\''master'\'' into issue1630. commit f07f82499e92e531f3f6385f792dcbb8d3d1b624 Merge: 1e1063afa b245b999a Author: Alan Garny Date: Tue May 1 14:28:53 2018 +1200 Merge branch '\''master'\'' into issue1627. commit 4cbe06e4de90d1e82a3206d255b31cc8313ae6b2 Merge: eefc5462a b245b999a Author: Alan Garny Date: Tue May 1 14:28:11 2018 +1200 Merge branch '\''master'\'' into issue1544. commit b245b999aad26b7af9cd1b66ec8ed68ede270f7f Merge: e03d46fb1 a0feca9bf Author: Alan Garny Date: Tue May 1 14:22:21 2018 +1200 Python: updated pip to version 10.0.1. commit a0feca9bf039deac996450d93e1a97c3615a162d Author: David Brooks Date: Tue May 1 13:49:55 2018 +1200 Python: update pip to version 10.0.1 commit e03d46fb10d4102a55a2a5163335e3f08b62a0e7 Author: Alan Garny Date: Tue May 1 13:15:42 2018 +1200 For testing Jenkins. commit 41449bcc3c8cb6919ae71a7a87cf3b75a5d3389d Author: Alan Garny Date: Tue May 1 13:12:21 2018 +1200 For testing Jenkins. commit 31af9048a60c0c5baf91a4e69239e1d0c78ed9de Author: David Brooks Date: Tue May 1 12:53:37 2018 +1200 Python: update pre-built packages for Linux. commit 5055129720883e2bfef7d4f8fb495edbd92c7c1b Author: David Brooks Date: Tue May 1 11:17:27 2018 +1200 Python: update pre-built packages. commit 058561de9b8628c4ce6c6ee94032627bf8e3133f Author: David Brooks Date: Tue May 1 10:54:11 2018 +1200 Python: update `pip` to version 10.0.1 and use official `pypa` repositories for Python packaging tools. commit c7ac2deabc68b67dadb85205ad36a695db905d33 Author: Alan Garny Date: Mon Apr 30 18:17:37 2018 +1200 Simulation Support plugin: removed our handling of the File Handling interface (#1630). commit ec44d1f374bc6d10dade839808011e4bd9c438b7 Author: Alan Garny Date: Mon Apr 30 18:16:51 2018 +1200 Central widget: get our Simulation Support plugin to save/rename/reload a file before our file manager (#1630). commit e78cc0b26b43fe7cfd811368b71d4fa6581f886a Author: Alan Garny Date: Mon Apr 30 18:11:45 2018 +1200 Simulation Support plugin: removed our handling of the File Handling interface (#1630). commit 073babedc85acfdbbc94b004fe0f91d2876aad94 Author: Alan Garny Date: Mon Apr 30 18:10:13 2018 +1200 Now track our Simulation Support plugin (#1630). commit 3d2728f9b3ad8c9bc4375844134081e21e081033 Author: Alan Garny Date: Mon Apr 30 16:29:02 2018 +1200 Main window: slight improvement to the way we use the Core plugin. commit 6a2ff90799fee28aaf5ba8d6bb21d38ef4fdafdd Author: Alan Garny Date: Mon Apr 30 16:26:37 2018 +1200 Some minor cleaning up. commit 139c46e146be83c2e40f75d114b16daf2459657c Author: Alan Garny Date: Mon Apr 30 16:07:34 2018 +1200 Some minor cleaning up. commit 4032c43525892075e128e5faf4168ab5cfc9be2f Author: Alan Garny Date: Mon Apr 30 11:48:44 2018 +1200 Core plugin: some minor improvement to the reloading of a file. commit 1acdf7741eefc6a2f8d5f776c0d438eef536cac8 Author: David Brooks Date: Sun Apr 29 12:13:44 2018 +1200 Python: tidyup CMake code commit 27059aafd13c6b989ea59106beeaa31b9bbb7454 Author: David Brooks Date: Sun Apr 29 12:12:36 2018 +1200 CMake: optionally specify byproducts of copying files in `add_plugin` commit 978c45f8275af193f58e1568734a426919ab210b Author: David Brooks Date: Sun Apr 29 12:09:16 2018 +1200 CMake: export the target that `add_plugin` uses to copy files. commit e4e160f972f6d4872b52027911ae32c165780d03 Merge: 443380262 31b4adc64 Author: David Brooks Date: Sat Apr 28 20:19:19 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit eefc5462a8e232d50b0a5f0107cd14e9d03d92a9 Merge: 3945cd8c7 31b4adc64 Author: Alan Garny Date: Fri Apr 27 17:23:05 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 31b4adc6408d3a09263e9bf35cbe32adea671055 Merge: dde9cdef5 191cab73e Author: Alan Garny Date: Fri Apr 27 17:19:59 2018 +1200 Closes #1626 and closes #1633. commit 191cab73edd789a3b0db3511d11e47a508fe454e Author: Alan Garny Date: Fri Apr 27 16:47:01 2018 +1200 Slight updates to our downloads page (#1626 and #1633). commit acc466b3dbacf7f86a4955c9efc11d667346a2f8 Author: Alan Garny Date: Fri Apr 27 16:41:14 2018 +1200 Core plugin: fixed a problem with menu items in the File | Reopen menu potentially appearing as disabled (#1633). commit d890eccf7f14a936d953ad4a680ea242045eafc1 Author: Alan Garny Date: Fri Apr 27 15:14:05 2018 +1200 Some minor cleaning up. commit 1e1063afa5c4b38f01986e35c3e94b805d246ca2 Merge: 5aeb433f7 dde9cdef5 Author: Alan Garny Date: Fri Apr 27 11:29:04 2018 +1200 Merge branch '\''master'\'' into issue1627. commit 3945cd8c7d185e5b83c1a6816316b19bd7ddafc7 Merge: fe85e2e28 dde9cdef5 Author: Alan Garny Date: Fri Apr 27 11:28:35 2018 +1200 Merge branch '\''master'\'' into issue1544. commit a0eac10364340d6a7f169b7ba80f4de7ddcff612 Merge: a7a9f8d76 dde9cdef5 Author: Alan Garny Date: Fri Apr 27 11:28:18 2018 +1200 Merge branch '\''master'\'' into issue1626. commit dde9cdef53d182a9e746f48167075a1a43a0e847 Author: Alan Garny Date: Fri Apr 27 11:26:39 2018 +1200 libSBML: updated our Linux binary. Argh, the previous commit was unnecessary. I hadn'\''t pulled the latest changes, which is why the SHA-1 value was wrong... since it was out of sync...! commit a7a9f8d7621daf068b5f947d64e99a289ed94859 Author: Alan Garny Date: Fri Apr 27 10:47:39 2018 +1200 Core plugin: slight improvement to our CorePlugin::updateFileReopenMenu() method. commit a1294d9ff2d39ed912bc84ecc257729f96f6c45f Author: Alan Garny Date: Fri Apr 27 10:41:07 2018 +1200 Core plugin: slight improvement to our CorePlugin::updateFileReopenMenu() method. commit 9b002d4adddf14027bf0c1ee80c1d0d1dd23821a Author: Alan Garny Date: Fri Apr 27 10:37:25 2018 +1200 Some minor cleaning up. commit 48109bbc143dd067d1f42e7c05e77f5f0a23ce98 Author: Alan Garny Date: Fri Apr 27 10:33:51 2018 +1200 libSBML: updated our Linux binary. Hmm, somehow, its SHA-1 value was wrong?... commit 30054785faa1a8097cff1832b1425c003b74c9f5 Author: Alan Garny Date: Thu Apr 26 17:44:42 2018 +1200 Simulation Experiment view: don’t consider a SED-ML file as modified under certain conditions (#1626). commit 5aeb433f7b107e211758d6bae34fb882cd4e1e10 Merge: e07535bfc f19736827 Author: Alan Garny Date: Thu Apr 26 16:37:52 2018 +1200 Merge branch '\''master'\'' into issue1627. commit fe85e2e289a95cda2165d0621e338f4e84d60062 Merge: bc3ee568d f19736827 Author: Alan Garny Date: Thu Apr 26 16:36:27 2018 +1200 Merge branch '\''master'\'' into issue1544. commit f19736827f0efd2d03c75fb230d209fefac621b4 Merge: 58b75f572 a5c33eeea Author: Alan Garny Date: Thu Apr 26 16:35:04 2018 +1200 SBML API: don'\''t build libSBML with bzip2 or zip compression anymore (closes #1628). commit a5c33eeea7c65d0391964042d3f8df218c22abd9 Author: Alan Garny Date: Thu Apr 26 16:00:35 2018 +1200 Slight update to our libSBML tests (#1628). commit bf1500784fbda040f723c772a01e0ed8d74e287e Author: Alan Garny Date: Thu Apr 26 15:22:57 2018 +1200 Slight updates to our downloads pages (#1628). commit 0863988c45ea44da67ff8e4c6d958d6ef47a38b2 Author: Alan Garny Date: Thu Apr 26 15:21:46 2018 +1200 Don'\''t only build libSBML (#1628). commit 2801868c25bd833b92ca744b355f5d77825210f3 Author: Alan Garny Date: Thu Apr 26 15:21:26 2018 +1200 libSBML: new binaries (#1628). commit ad22a2fbb9407c98468ba3d7a8b12e607e2c4d00 Author: Alan Garny Date: Thu Apr 26 15:01:00 2018 +1200 Linux: no need to ship bzip2 anymore (#1628). commit 2968479344e1d77e9b6eead26f34b912ffc18fa2 Author: Alan Garny Date: Thu Apr 26 15:00:25 2018 +1200 libSBML: don'\''t build with bzip2 and zlib support (#1628). commit 8e281e23660522d5a912366ee729618c7930f585 Author: Alan Garny Date: Thu Apr 26 14:58:07 2018 +1200 Only build libSBML (#1628). commit e07535bfcb396a959c4d481a12d01138e2dbac88 Author: Alan Garny Date: Thu Apr 26 13:26:11 2018 +1200 Reverting most of d02504a, b94d322 and 7f5b6c3. commit 7f5b6c31e399aab739bd1432a2cafe1acfb50855 Author: Alan Garny Date: Thu Apr 26 13:18:21 2018 +1200 CMake: execute the packaging related code only if really needed. commit b94d3223f6fc21a3e3f3162593467cc67a830db7 Author: Alan Garny Date: Thu Apr 26 13:16:01 2018 +1200 CMake: execute the packaging related code only if really needed. commit d02504aa97a26c84fad0ee3163ebd75f06d82aff Author: Alan Garny Date: Thu Apr 26 13:11:43 2018 +1200 CMake: execute the packaging related code only if really needed. commit dfc77be4f737d56b59ce7a2caad2ca77ce970544 Author: Alan Garny Date: Tue Apr 24 17:50:37 2018 +1200 Make sure that ICU (and Mesa while we are at it) is available before we build ICU-dependent libraries (e.g. o2). Also deploy our copy of ICU on Linux (#1627). commit 12fd462bf1a3db9f7b0b7f1119da241b2c3af317 Author: Alan Garny Date: Tue Apr 24 17:47:53 2018 +1200 ICU package: make sure that we can retrieve our PKGCONFIG directory (#1627). commit 3fbf05772248cee4549d79a0550c267918428e23 Author: Alan Garny Date: Tue Apr 24 17:36:53 2018 +1200 ICU package: make sure that we can retrieve our list of ICU libraries (#1627). commit 9d387f7b634b0032d70b070f1d448e49c9ef252f Author: Alan Garny Date: Tue Apr 24 17:26:28 2018 +1200 Don'\''t build ICU anymore (#1627). commit a83c48356d071de72f1ec1c79d7ab88a1a1a469a Author: Alan Garny Date: Tue Apr 24 17:14:44 2018 +1200 Built our own copy of ICU on Linux (#1627). commit 3b038c9ce21a000a2ab2450b7c0a83120e74c7aa Author: Alan Garny Date: Tue Apr 24 17:08:57 2018 +1200 Built our own copy of ICU on Linux (#1627). commit d8fd939e25faef64462819f508eb67b3cf775219 Author: Alan Garny Date: Tue Apr 24 17:05:43 2018 +1200 Build our own copy of ICU on Linux (#1627). commit 23410805805847d9a09b84c1833c4058ca1a7e76 Author: Alan Garny Date: Tue Apr 24 16:53:45 2018 +1200 Build our own copy of ICU on Linux (#1627). commit bbc7886d3a2eb6d18b1618d73b414773a30852dc Author: Alan Garny Date: Tue Apr 24 16:16:59 2018 +1200 Build our own copy of ICU on Linux (#1627). commit 0cb730d2868d1af36032e640d7bc7f098b4bd5b0 Author: Alan Garny Date: Tue Apr 24 16:11:47 2018 +1200 Build our own copy of ICU on Linux (#1627). commit 2bf11663b43bf2472a540077178fcb2761c4c1f4 Author: Alan Garny Date: Tue Apr 24 16:11:24 2018 +1200 Build our own copy of ICU on Linux (#1627). commit 482f14434a91f1caac6e76c51a4c84efd4145174 Author: Alan Garny Date: Tue Apr 24 16:07:06 2018 +1200 Building our own copy of ICU on Linux (#1627). commit f51a554e06756943186ac627c902ffc4ee7898e0 Author: Alan Garny Date: Tue Apr 24 15:00:22 2018 +1200 Only build OAuth (#1627). commit 1b9544214481c96d58174975eeb5333821e9c916 Author: Alan Garny Date: Tue Apr 24 15:00:03 2018 +1200 Some minor cleaning up. commit 58b75f572e1a2404c864773f4182c52799c475a4 Merge: 7937ca9b2 c4e3e8471 Author: Alan Garny Date: Mon Apr 23 18:34:05 2018 +1200 New snapshot. commit c4e3e8471fda6109b3cb5c1601096ecc91fdcec6 Author: Alan Garny Date: Mon Apr 23 18:05:20 2018 +1200 New snapshot. commit 449fe4e66a35ff81ec0a8505e06043af0d2ffa21 Author: Alan Garny Date: Mon Apr 23 18:03:09 2018 +1200 Simulation support: improved stability...? This is related to issue #1574 where some random crashes at the beginning of SimulationData::deleteArrays(), i.e. when trying to free up mConstants…!? commit 3230399052ad14d2df76b9c3586355de4ece6f26 Author: Alan Garny Date: Mon Apr 23 17:39:21 2018 +1200 Graph Panel widget: prevent a graph panel from becoming black. commit bc3ee568d9ed7b88d94aa738103facb8c8d77140 Merge: ed56119d9 7937ca9b2 Author: Alan Garny Date: Mon Apr 23 13:12:02 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 7937ca9b22656d3fa87219db369dd32d73c6b373 Merge: ae667ffaa 485982b91 Author: Alan Garny Date: Mon Apr 23 13:10:28 2018 +1200 Graph Panel widget: fixed a problem with graph panels not always being properly aligned (closes #1619). commit 485982b9151f7964d6ff33b8dfd072b1057bee1e Author: Alan Garny Date: Mon Apr 23 12:03:17 2018 +1200 Slight update to our downloads page (#1619). commit 18e99c66a0a7cded060ce9b59f01b5f632887353 Author: Alan Garny Date: Mon Apr 23 11:49:16 2018 +1200 Graph Panel widget: prevent some flashing of the X axis on Windows and Linux (#1619). commit 617f4ee1ebc8c9af16b4734a3e4b6af319496754 Author: Alan Garny Date: Mon Apr 23 11:04:04 2018 +1200 Simulation Experiment view: make sure that our legend is of the right width when changing a graph'\''s title (#1619). commit 4b1e1657db9a813fe9e9ffd2220dc81f6b1e5abb Author: Alan Garny Date: Thu Apr 19 18:55:01 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 28e18bc33ee3a520bc864abc63998bbbfb544cb4 Author: Alan Garny Date: Thu Apr 19 18:40:59 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 17d9226cbce48d3ba86bf2519f3cf301749ee5fa Author: Alan Garny Date: Thu Apr 19 18:25:58 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit e8ea3c1f4f20d8ccd72bf18f3483cfc3af5c0ba8 Author: Alan Garny Date: Thu Apr 19 18:22:49 2018 +1200 Some minor cleaning up. commit 53b30734213391bf5a3f0c4d12873bc9365ea3c3 Author: Alan Garny Date: Thu Apr 19 18:04:13 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit a8042cfda80b415a74122a10d765aeb13b7e82fb Author: Alan Garny Date: Thu Apr 19 17:44:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit ff5671b5e71c9721774821cfab88f745fe4aec13 Author: Alan Garny Date: Thu Apr 19 17:40:27 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit e4f67f68dbb78d6a3bdca0ab74a166027402ee34 Author: Alan Garny Date: Thu Apr 19 17:39:17 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 15417cf2818d4cccd2df08fb5b5ea99d5a9d8b4e Author: Alan Garny Date: Thu Apr 19 16:55:21 2018 +1200 Graph Panel widget: only allow zooming in/out using the wheel when over the canvas. commit fa176653b3ca02fc780b11a0f40ddeab8d1cf800 Author: Alan Garny Date: Thu Apr 19 15:56:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit e6f188b0b6b7bb49eaa5661e52d207df0aa06ed3 Author: Alan Garny Date: Thu Apr 19 15:18:28 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 3187db6f0951c5cc649d069495540834731c9e16 Author: Alan Garny Date: Thu Apr 19 15:01:47 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit bf2559d996dfc1fcc63bf11636b162cee51be146 Author: Alan Garny Date: Thu Apr 19 14:55:49 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 067dafa3e7b6ff9de566da8f3b48322baf2c639d Author: Alan Garny Date: Thu Apr 19 14:45:00 2018 +1200 Some minor cleaning up. commit c5c4a07b7fdc35dcfb6093191e93e33eaa66eed6 Author: Alan Garny Date: Thu Apr 19 11:00:14 2018 +1200 Some minor cleaning up. commit d285e3b5190eba9eb30b7befcf9d0fee9f4452d4 Author: Alan Garny Date: Thu Apr 19 10:16:19 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit 443380262a3019a33019934891c7e10d85653421 Author: David Brooks Date: Wed Apr 18 20:23:06 2018 +1200 Python: Windows and Linux builds also need QtQuickWidgets. commit 9ad606255ce802d35fa11c24171e3cd3b91ac191 Author: Alan Garny Date: Wed Apr 18 18:36:06 2018 +1200 Merge branch '\''master'\'' into issue1619. commit bc1233bdbad486290a82b0dbbcd4eda8d04ee03c Author: Alan Garny Date: Wed Apr 18 18:33:19 2018 +1200 Merge branch '\''master'\'' into issue1619. commit 53bc89d1a45343e806f93584a7d37dbb57cee186 Merge: 023d39afa ae667ffaa Author: Alan Garny Date: Wed Apr 18 18:30:55 2018 +1200 Merge branch '\''master'\'' into issue1619. commit ed56119d9c0ec41ce500762b6b0369aa46d09202 Merge: 61b18f730 ae667ffaa Author: Alan Garny Date: Wed Apr 18 18:27:44 2018 +1200 Merge branch '\''master'\'' into issue1544. commit ae667ffaaacc9dfc29902be6c02a0792c33e2d16 Merge: 9dde3e71a 022d71c0c Author: Alan Garny Date: Wed Apr 18 18:27:04 2018 +1200 Some minor cleaning up. commit 022d71c0c8f73e675ba8597f73fbf32a3675a9e9 Author: Alan Garny Date: Wed Apr 18 17:57:20 2018 +1200 CSV data store: make sure that a value actually exists before retrieving it. We have a Q_ASSERT which was triggered when exporting some simulation (running noble_1962_local.sedml for 3000 ms and then 30000 ms) to CSV using the debug version of OpenCOR (in Qt Creator). The release version was (somehow) working fine, but we were definitely trying to retrieve a non-existing array value, which could have bitten us at some point… commit b8a996a15142e57ed51ef774fbf31cae6598e111 Author: Alan Garny Date: Wed Apr 18 16:38:48 2018 +1200 Common widget: only allow for events to be processed if our parent'\''s updates are enabled (#1622). commit 6d6c8f45e5e039424580f365937d7ec3602522ff Author: Alan Garny Date: Wed Apr 18 16:37:53 2018 +1200 Make sure that we always use our in-house processEvents() method. commit 023d39afa14b383dff82b87a922beae97c79ae66 Author: Alan Garny Date: Wed Apr 18 16:01:46 2018 +1200 Merge branch '\''master'\'' into issue1619. commit 61b18f730801fc0404fa0e9e99eb0a9144dbcd6d Merge: e82ca714e 9dde3e71a Author: Alan Garny Date: Wed Apr 18 15:59:09 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 9dde3e71a09570f7c2d04f83ff1af1e1ba6f03cd Merge: 50cb55dae 86050e5d9 Author: Alan Garny Date: Wed Apr 18 15:57:04 2018 +1200 Simulation Experiment view: fixed a problem with legend labels not always being right (closes #1620). commit 86050e5d9bda47438c373893fde420b5f5e8aa96 Author: Alan Garny Date: Wed Apr 18 15:21:03 2018 +1200 Slight update to our downloads page (#1620). commit d8f7f9bbefa8105004778f3fa3b7456605390060 Author: Alan Garny Date: Wed Apr 18 14:32:49 2018 +1200 Simulation Experiment view: improved the rendering of the GUI upon adding a graph (#1620). commit 9ec7a7ca9369f2fb72d405f2b466c217aef18b68 Author: Alan Garny Date: Wed Apr 18 12:55:12 2018 +1200 Some minor cleaning up. commit 3752d4907d19609b7b70357926a80a7a3956b8c0 Author: Alan Garny Date: Wed Apr 18 12:50:24 2018 +1200 Graph Panel widget: have our legend widget track our main legend labels (#1620). Indeed, for each run, a legend label is created, but we only want to show our main legend labels, i.e. the ones associated with our dummy run. commit 8053a6472e4b0fe0bc1fc834b149042a2107c62e Author: David Brooks Date: Wed Apr 18 12:18:07 2018 +1200 Python: disable call-tips in IPython console. commit 4aaa35b6e064b068ec5718f352bb0ee452edef7c Author: David Brooks Date: Wed Apr 18 12:15:19 2018 +1200 Python: update pre-built PythonPackages for Windows. commit 021fd8443adfb4c3bff96d944c2453b96dab1ed3 Author: David Brooks Date: Wed Apr 18 11:08:48 2018 +1200 Python: allow for no `bz2` package when importing matplotlib. commit 24dfa7d06417885e194d68685e4a6901ac3f7294 Author: Alan Garny Date: Wed Apr 18 10:48:34 2018 +1200 Some minor cleaning up. commit db062d461b534de8bbd2d2e5187920d31af60367 Author: David Brooks Date: Wed Apr 18 09:06:04 2018 +1200 Graphs: use a different graph colour for each simulation run. commit 98b406587fe062b6bdf1ca1c9c002f060e05e9c1 Author: David Brooks Date: Tue Apr 17 21:56:25 2018 +1200 Python: update documentation. commit a514059045f708df9367a7e892963c6ee22fd17f Author: David Brooks Date: Tue Apr 17 21:56:05 2018 +1200 Python: DataStoreVariable::values() is wrapped for Python. commit 95f9840411500ca818886803406cb019882278cc Author: David Brooks Date: Tue Apr 17 21:54:35 2018 +1200 Python: Try to keep keyboard focus when we run a simulation. commit b9ffd3c503b64379d262253a77a1d5ecdc45c3eb Author: David Brooks Date: Tue Apr 17 21:53:31 2018 +1200 Python: tidy code. commit f225158cb054fd62206a9171aa6152b298c6f68e Author: David Brooks Date: Tue Apr 17 20:14:22 2018 +1200 Python: get PythonSupport plugin building under Windows. commit 056d729af77e9dfe6b843349cdb0ab3b27827af3 Author: David Brooks Date: Tue Apr 17 19:22:47 2018 +1200 Python: add PythonSupport plugin so we can set PYTHONHOME. commit 50cb55daed822b7bcde6143eb1fb04194896a91c Author: Alan Garny Date: Tue Apr 17 17:18:01 2018 +1200 Property Editor widget: fixed a small issue with a colour property. commit c1519db864b8b3e5dcb7f2b9a93287bf735c18ac Author: Alan Garny Date: Tue Apr 17 16:09:03 2018 +1200 Some minor cleaning up. commit f6db0ecc7d700d1d56c7ac61a586843aa42dad80 Author: Alan Garny Date: Tue Apr 17 14:09:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). Things now look fine on macOS, but on Windows and Linux, the call to forceAlignWithNeighbors() (?) results in some GUI flashes. commit 8ee9bd78701fd4e0eaa5363600c0706d7374ea21 Author: Alan Garny Date: Tue Apr 17 09:45:06 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned (#1619). commit e6eaeb5958029a9f0a0239774449d71bcfc9918c Author: Alan Garny Date: Tue Apr 17 08:51:59 2018 +1200 Some minor cleaning up. commit e82ca714e851cfa9cb20df48fe4fd8584b3aaccf Merge: 69638d24b 036156a55 Author: Alan Garny Date: Mon Apr 16 16:53:14 2018 +1200 Merge branch '\''master'\'' into issue1544. commit 036156a55b41f0e0db6f4bc78bb0c967907a45ef Merge: e30cfd777 31809420f Author: Alan Garny Date: Mon Apr 16 16:49:04 2018 +1200 Base Python with Sphinx. commit 31809420f77ad4c0db30da63684a07f65761f002 Author: Alan Garny Date: Mon Apr 16 16:11:29 2018 +1200 Rebuild a default version of OpenCOR. commit eed235e71eaa1b71a7d60af0c56ceed67bd31b5f Author: Alan Garny Date: Mon Apr 16 16:10:23 2018 +1200 Some minor cleaning up. commit 519e05f6dc7ba9bb28d260af5c251b5f624987c5 Author: Alan Garny Date: Mon Apr 16 15:59:45 2018 +1200 Revert "Rebuild a default version of OpenCOR." This reverts commit 636b394c91753c78f42c39638eff88585464404c. commit 636b394c91753c78f42c39638eff88585464404c Author: Alan Garny Date: Mon Apr 16 15:58:46 2018 +1200 Rebuild a default version of OpenCOR. commit 1060546f6a9387ae97ab62c5bbe2aa830bd04fb3 Author: Alan Garny Date: Mon Apr 16 15:55:13 2018 +1200 Some minor cleaning up. commit 831bf1d1aa1c2b663792d261c7e0b2dec19152a1 Author: Alan Garny Date: Mon Apr 16 15:54:36 2018 +1200 Some minor cleaning up. commit 0fa531e17ec67a828c15339ee8a5776205d93f9f Author: Alan Garny Date: Mon Apr 16 15:32:29 2018 +1200 Some minor cleaning up. commit 417148aa43fc4d45d3df01f942df31159628d06a Author: Alan Garny Date: Mon Apr 16 15:24:08 2018 +1200 Some minor cleaning up. commit bfef24673c49de8f797d03c1177c3424f666a88b Author: Alan Garny Date: Mon Apr 16 15:23:31 2018 +1200 Some minor cleaning up. commit 4aca9186421e45d0748a7dd99d9d7fae2157fa96 Author: Alan Garny Date: Mon Apr 16 14:59:59 2018 +1200 Temporarily build the OpenSSL, Python, PythonPackages and zlib plugins only. commit 08029572a48efb48059c1b7164ef93e2771e4f5b Author: Alan Garny Date: Mon Apr 16 14:58:33 2018 +1200 Some minor cleaning up. commit 59170277dfdedf3d86549945c1ec738ea9bd6f82 Author: David Brooks Date: Mon Apr 16 14:40:12 2018 +1200 CMake: use lowercase names for commands and our macros. commit 1c2bb443612f8af5eb0bcd1deebffb1a12f70bcf Author: David Brooks Date: Mon Apr 16 14:38:29 2018 +1200 Python: tidy code. commit 316dfc934bf1f58ad6f4ae154a69451b4edec17e Author: David Brooks Date: Mon Apr 16 14:38:02 2018 +1200 Python: ensure pip installs our customised packages. commit c0d27c790665a13a02edf7e0836f3d3fd9233b5c Author: David Brooks Date: Mon Apr 16 14:36:15 2018 +1200 Python: update pre-built packages for macOS. commit 322f8efe9a440e8e355efaf89fdba3940725aa97 Author: David Brooks Date: Mon Apr 16 14:32:38 2018 +1200 Python: new pre-built packages for Windows. commit f2ebe02d7ded80c4146a1548a6290f91b52add94 Author: David Brooks Date: Mon Apr 16 14:31:46 2018 +1200 Python: remove command line interface from Python plugin. commit 9f2a92d21b342cbde6e1c8d9ae1c08a26450c5d3 Author: Alan Garny Date: Mon Apr 16 13:09:28 2018 +1200 Some minor cleaning up. commit 00dd45ea712b9e557e40a88617b55cd6007a2d65 Author: Alan Garny Date: Mon Apr 16 11:10:26 2018 +1200 Temporarily build the Python and PythonPackages plugins. commit 9a4fbc189e2037f619efd22fc842a91aa9bd6f60 Author: Alan Garny Date: Mon Apr 16 10:07:14 2018 +1200 Some minor cleaning up. commit b5bfc37213bab52077224a3e10666856ab62151a Author: David Brooks Date: Mon Apr 16 09:29:48 2018 +1200 Python: tidy code. commit fea25d141ab72ba5277d7b276918ee7af2ca2de4 Author: Alan Garny Date: Mon Apr 16 09:06:16 2018 +1200 Some minor cleaning up. commit c4fff9d2277818e0d127154869beea028715ae5a Author: David Brooks Date: Sun Apr 15 20:30:13 2018 +1200 CMake: use lowercase names for commands and our macros. commit 5736369901c87a8ee88976a1133a01858a04e11a Author: David Brooks Date: Sun Apr 15 20:27:48 2018 +1200 Python: define and use PYTHON_ABI_VERSION. commit 5e4833b355ef55b8e5a068963c7a2c85ae4991cb Author: David Brooks Date: Sun Apr 15 20:27:07 2018 +1200 Python: updated versions of numpy, scipy, matplotlib, ipykernel, ipython and lxml packages. Note: Windows 64-bit binaries are now available on PyPi. commit bda8acaf6cf68ed748d784a52dce6685056ca69f Author: David Brooks Date: Sun Apr 15 20:00:22 2018 +1200 Python: tidy code and add CLI test results. commit caec1a8593372a34d41968d5e3f8467b94d1c0e6 Author: Alan Garny Date: Sun Apr 15 14:22:09 2018 +1200 Removed the "Constant with gradient" icon, which we don'\''t use yet. commit c1f92c7909fd626c928f323e3c7311e6c9864923 Author: Alan Garny Date: Sun Apr 15 14:09:55 2018 +1200 Some minor cleaning up. commit acc11e18bf74b20b00a0cc6d15f64f9eed67a720 Author: David Brooks Date: Sat Apr 14 20:59:46 2018 +1200 Python: allow debug builds under Windows; tweak CMake file. commit 046d3ef8f90aba08ee77e94eeff4bc24e64ccfba Author: David Brooks Date: Sat Apr 14 20:49:49 2018 +1200 CMake: use lowercase names for commands and our macros. commit 819b973feba15b4ceb7f0129a3e906374a439da1 Author: David Brooks Date: Sat Apr 14 20:45:03 2018 +1200 Python: update `pip` and related tools. commit b797dfa318fac62cd484095ef76801c23d78bfd7 Merge: c5f2409bd e30cfd777 Author: David Brooks Date: Sat Apr 14 20:40:06 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 84711d50c72bcb0f7ab018a6cd657780089504b8 Merge: 2f3100251 41e74108c Author: Alan Garny Date: Sat Apr 14 12:09:29 2018 +1200 Non-deployed Python with Sphinx. commit 41e74108ca1c4c13b6db3c4cd6f24c198d97173c Author: David Brooks Date: Sat Apr 14 10:32:32 2018 +1200 Python: remove unused script. commit ddf2b9aae4fb04f77b5c3b2f7664fe8d0298386f Author: David Brooks Date: Sat Apr 14 10:24:18 2018 +1200 Python: minor tweaks. commit ff3ff952887baf71223c258151218823de8a6710 Author: David Brooks Date: Sat Apr 14 10:21:40 2018 +1200 Python: update tests since Python is no longer a deployed plugin. commit 06196ca4fd7617618a28ea215166fa0349b47108 Author: David Brooks Date: Sat Apr 14 10:17:01 2018 +1200 Python: Windows debug mode packages. commit 8fc943d48dd0f16f9493e90811fa702f8a136812 Author: David Brooks Date: Sat Apr 14 10:15:26 2018 +1200 Python: tweak CMake targets and dependencies. commit 2f3100251eb5f8e2ee22accb4435dc6c5c0ba0bb Merge: b73d756e1 e30cfd777 Author: Alan Garny Date: Sat Apr 14 01:37:48 2018 +1200 Merge branch '\''master'\'' into issue1607. commit 69638d24bffc152e07707a13b219fe48d27392fd Merge: 3fca95bb3 e30cfd777 Author: Alan Garny Date: Sat Apr 14 01:37:19 2018 +1200 Merge branch '\''master'\'' into issue1544. commit e30cfd777d5b29793e36aa7fa80b7fc6ff105b1a Merge: ba30578da 800c3ef82 Author: Alan Garny Date: Sat Apr 14 01:36:27 2018 +1200 Qt: upgraded to Qt 5.9.5 LTS (closes #1615). commit 800c3ef8274541d2102ea92d2b021bbf292cead8 Author: Alan Garny Date: Sat Apr 14 00:55:28 2018 +1200 Slight update to our downloads page (#1615). commit fd5c9d2c1bbb6ea00cd03afa8f57193618a8fb8b Author: David Brooks Date: Fri Apr 13 21:15:25 2018 +1200 Python: new PythonPackages for macOS and Linux. commit ca764e4bd1c983a6a80fb121f7c70d42f99fbffb Author: David Brooks Date: Fri Apr 13 21:14:50 2018 +1200 Python: also use Release build for Debug under Windows. commit 118b7b2cdcb4078262d53a0e0eb16a987da8e481 Author: David Brooks Date: Fri Apr 13 21:13:18 2018 +1200 Python: use a global target, OpenCORBuild, to ensure Python plugin packages are actually built. commit b73d756e1078b282d550db0e64b6b579e60dff95 Merge: f12e2aad6 ba30578da Author: Alan Garny Date: Fri Apr 13 18:56:38 2018 +1200 Merge branch '\''master'\'' into issue1607. commit 3fca95bb3786a87c2f31a06102efeef9f9fb4b59 Merge: d30bb125f ba30578da Author: Alan Garny Date: Fri Apr 13 18:56:09 2018 +1200 Merge branch '\''master'\'' into issue1544. commit ba30578da13417d5c287a2e5cf5f8c83420715f7 Merge: fa6d38517 58494b8f0 Author: Alan Garny Date: Fri Apr 13 18:55:14 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all (closes #1613). commit 48d47055b3dcd1c3c8a9b09ccbfbe31c58b38fdf Author: David Brooks Date: Fri Apr 13 18:32:05 2018 +1200 Python: don'\''t include plugin libraries with OpenCOR. commit e200226496fbd26a7f1a1466e14217b354c28dd7 Author: David Brooks Date: Fri Apr 13 18:26:30 2018 +1200 Python: PythonPackages build depends on a built Python. commit 58494b8f08d0b490ddda14d80118d5506c715c85 Author: Alan Garny Date: Fri Apr 13 18:13:48 2018 +1200 Simulation Experiment view: properly handle (short) successive runs (issue #1613). commit 955bac7b0b54de3b3b25f5eb9adc4b9ba74eff2d Author: Alan Garny Date: Fri Apr 13 18:04:29 2018 +1200 Some minor cleaning up. commit 8e86854d58ed21aab335ff2d56e34ceda0d94181 Author: Alan Garny Date: Fri Apr 13 17:59:58 2018 +1200 Some minor cleaning up. commit 6e918292551a78b17660e336a288e5011a853980 Author: Alan Garny Date: Fri Apr 13 17:57:37 2018 +1200 Some minor cleaning up. commit edeac223d633ca01eeb7ff7e9eab5b49023765a4 Author: Alan Garny Date: Fri Apr 13 17:56:11 2018 +1200 Some minor cleaning up. commit 3b6e6d803d37b5604d8e46278a982e1909c53220 Author: Alan Garny Date: Fri Apr 13 17:53:28 2018 +1200 Some minor cleaning up. commit 0c60ec42db4a7cc8b183248225f89e7b7ef9fc4a Author: Alan Garny Date: Fri Apr 13 15:30:59 2018 +1200 Simulation Experiment view: simplified the way we (re)check our simulation results. commit 55b9ccba479390eb78669051383d19d36510b135 Author: Alan Garny Date: Fri Apr 13 15:25:55 2018 +1200 Simulation Experiment view: simplified the way we (re)check our simulation results. commit 620b24f4532a1b8c14e618274c1151614bb6a721 Author: Alan Garny Date: Fri Apr 13 15:15:02 2018 +1200 Some minor cleaning up. commit ec57b2ea91f523f7cbdd00dd160e07e63a940951 Author: Alan Garny Date: Fri Apr 13 15:10:13 2018 +1200 Some minor cleaning up. commit c3ff5dacfd41a6cc1bf4645de318ff9dd767b677 Author: Alan Garny Date: Fri Apr 13 14:41:38 2018 +1200 XSL transformer: put a mutex around our use of our list of jobs. commit c904bb9691656ac1aeba640d0c7cf3585e0c8a9f Author: Alan Garny Date: Fri Apr 13 14:35:54 2018 +1200 Some minor cleaning up. commit 195824a608c88ded9aed31024c89d369dfb6a337 Author: Alan Garny Date: Fri Apr 13 14:33:27 2018 +1200 Editor widget: use the old connect() syntax when it comes to handling QScintilla signals. Indeed, we cannot use the new connect() syntax since the signal is located in our QScintilla plugin and that we don'\''t know anything about it... commit 6303fc014ea73490fdf72f103b746a20bfe232f8 Author: David Brooks Date: Fri Apr 13 11:23:04 2018 +1200 Python: don'\''t actually deploy any code. commit c5f2409bdcda957e962214d35c5ba3517757d8a7 Author: David Brooks Date: Thu Apr 12 22:31:30 2018 +1200 Python: refactor code to use better names for variables. commit 5b30612c5cbe994b753c07d4f4cd41b526c4ab74 Author: David Brooks Date: Thu Apr 12 22:30:22 2018 +1200 Python: use a `DataStoreValue` object to make simulation data information available to Python. commit 78fbbeb56a5e503fa0501c8de1df2741615b30ca Author: David Brooks Date: Thu Apr 12 22:20:16 2018 +1200 Datastore: rename `value()` to `valueAt()` as it gets a value at a position. commit f12e2aad60e29c11a36f61d25c70d86d48404f54 Author: Alan Garny Date: Thu Apr 12 19:09:02 2018 +1200 Some minor cleaning up for our pythonplugin.* and pythonpackagesplugin.* files (#1607). commit 238d5e0fc50da7e05339fd408b1002ea0a547533 Author: Alan Garny Date: Thu Apr 12 19:03:08 2018 +1200 Some minor cleaning up for our pythonplugin.* and pythonpackagesplugin.* files (#1607). commit a1bce54bdab6f75a6a6ed3eccd01e3d28cef34f7 Author: Alan Garny Date: Thu Apr 12 16:14:45 2018 +1200 Slight update to our make/common.cmake file. commit 9e9e800c049cf47db294f689a162b9404c2b2a98 Author: Alan Garny Date: Thu Apr 12 15:56:52 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file (#1607). commit 36f001acdc921856c926e8046da5c8dc75f6f69b Author: Alan Garny Date: Thu Apr 12 14:49:53 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file (#1607). commit 637434ce2905378c8558087a084a54b10147fb86 Author: David Brooks Date: Thu Apr 12 14:38:49 2018 +1200 Python: rename PythonSupport plugin to PythonQtSupport. commit eb42c4f4adcf78506991603758277eb1bddb425e Author: Alan Garny Date: Thu Apr 12 14:38:30 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file (#1607). commit bb06773efa32a0e48fdcf22f9fd48cc2c74487e0 Merge: d4ea5576d fa6d38517 Author: David Brooks Date: Thu Apr 12 14:19:56 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 9b5268d653069cb8740d03b727af04f8e175df7e Author: Alan Garny Date: Thu Apr 12 13:57:49 2018 +1200 Some minor cleaning up. commit f9b0df3730ef35564326d2300cde4dfb15973c6b Author: Alan Garny Date: Thu Apr 12 12:43:33 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file (#1607). commit d8aa42d0a2af9afedaf815c177174886ad84dc2c Author: Alan Garny Date: Thu Apr 12 12:38:47 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file (#1607). commit 7536703d370986c2a3dd04e77dac9dd4d706de29 Author: David Brooks Date: Thu Apr 12 10:41:54 2018 +1200 Python: more tidying up. commit fb028bdd72af8b7f668afa5bd142602215c4e9a0 Author: David Brooks Date: Thu Apr 12 10:35:38 2018 +1200 Python: remove more unneeded files. commit dc77009c7f8a6fe74c3d8f5423369fef101d29e5 Author: David Brooks Date: Thu Apr 12 10:29:06 2018 +1200 Python: remove/revert files not part of bundling runtime. commit 90dce758d0264b30753d4d1b6a111286e0e13f16 Merge: fa12f96e1 fa6d38517 Author: David Brooks Date: Thu Apr 12 10:21:34 2018 +1200 Merge branch '\''master'\'' into pythonlibrary commit d30bb125fad4bee505857339ef6d434eb439afed Merge: e0b5518c2 fa6d38517 Author: Alan Garny Date: Thu Apr 12 10:03:19 2018 +1200 Merge branch '\''master'\'' into issue1544. commit fa6d385179815b68c26f8695bc6aefec1da6b2b6 Merge: 55718f183 87daea555 Author: Alan Garny Date: Thu Apr 12 10:02:35 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all (closes #1613). commit 87daea555ee56de6a4d5e3a4987a91d1682d65da Author: Alan Garny Date: Thu Apr 12 09:28:35 2018 +1200 Slight update to our downloads page (#1613). commit fa12f96e14defe217a251b3d51edce1350c2ee2a Author: David Brooks Date: Thu Apr 12 00:48:51 2018 +1200 Minor tidy. commit 9e17529ab6b74311a2cf47643ac3934619a96761 Author: David Brooks Date: Wed Apr 11 22:26:37 2018 +1200 Tests: plugin status report includes `OpenSSL` and `zlib` so add them to the expected status test output. commit f7266d42c477ebb223612d571b4d7d8a1419a993 Author: David Brooks Date: Wed Apr 11 22:21:05 2018 +1200 Python: update CLI tests for plugin. commit fa4352dd5354311488e970fc6c0132fd3248ad7a Author: Alan Garny Date: Wed Apr 11 19:46:14 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all (#1613). commit 55718f183f498cf21793897f5772d52144c2350f Merge: d8800df69 c65963610 Author: Alan Garny Date: Wed Apr 11 19:22:57 2018 +1200 Fixed some seemingly random crashes (especially on Windows) (closes #1574). commit c65963610950454e500e162f8df3be123bfbaa34 Author: Alan Garny Date: Wed Apr 11 18:45:17 2018 +1200 Some minor cleaning up. commit 5f06a2861ea45a12663376ddc324d5f629cda818 Author: Alan Garny Date: Wed Apr 11 17:40:22 2018 +1200 Some minor cleaning up. commit 884092056c50fa22885e9f0fdfea28f780a4b9c2 Author: Alan Garny Date: Wed Apr 11 16:38:45 2018 +1200 Simulation Experiment view: only check for simulation results (upon clearing them) when actually needed, i.e. not when reloading the view (#1574). It looks like it might have been the cause of our seemingly random crashes…! commit 69a244d7ebcae26064589038cf4c36f00b7b145e Author: David Brooks Date: Wed Apr 11 14:13:39 2018 +1200 Python: make sure our scripts don'\''t access any local site-packages directory. commit f19f6c9b90ed2a2a27449a5bf674a6506bbdd3b2 Author: David Brooks Date: Wed Apr 11 12:34:23 2018 +1200 Python: new release for Linux. commit 7fd211501608ae3b3271ea496e8669bffc66a86c Author: David Brooks Date: Wed Apr 11 12:30:54 2018 +1200 Python: new release for Windows. commit af7b599038cf39b977c1007c032151491629f526 Author: David Brooks Date: Wed Apr 11 12:30:21 2018 +1200 Python: build Sphinx package for Windows. commit 19daada79263eb6d49b0e88aea5e8b68b5aa59dd Author: David Brooks Date: Wed Apr 11 12:28:23 2018 +1200 Python: define location of scripts. commit ae2acb3e783a6e7c519c45bf4f32caa1d2ba4203 Author: David Brooks Date: Wed Apr 11 12:26:37 2018 +1200 Python: ignore files we can'\''t access when updating scripts. commit c11cf1bc51ee0d95ee3e0ff71ba44e5f92d06a0e Author: Alan Garny Date: Wed Apr 11 11:23:30 2018 +1200 Some minor cleaning up. commit df154c2c3d11a15b725d637142af1b0377f1b5a9 Author: Alan Garny Date: Wed Apr 11 11:16:43 2018 +1200 Some minor cleaning up. commit 654f6c1b47c2981383039c416863dc44667112c6 Author: Alan Garny Date: Wed Apr 11 11:13:22 2018 +1200 Some minor cleaning up. commit c808850dcd2184c0370e0b2c560c1ef782334ef0 Author: Alan Garny Date: Wed Apr 11 11:08:32 2018 +1200 Some minor cleaning up. commit 4da2a6583f0985f804738a8c0220a278da94a3d5 Author: Alan Garny Date: Wed Apr 11 10:53:38 2018 +1200 Some minor cleaning up. commit e0b5518c226fe73b03025c61c3f57dc7601ae2c8 Merge: e0155a9a5 d8800df69 Author: Alan Garny Date: Wed Apr 11 10:13:14 2018 +1200 Merge branch '\''master'\'' into issue1544. commit ba8374b3a2d35c31b3ae08ed78cf1583ea26e72d Merge: c5823b693 d8800df69 Author: Alan Garny Date: Wed Apr 11 10:11:16 2018 +1200 Merge branch '\''master'\'' into issue1574. commit d8800df691c253ee570f359519ea2f90eb35393f Merge: 11e104788 6d8c6c2ad Author: Alan Garny Date: Wed Apr 11 10:07:01 2018 +1200 QScintilla: upgraded to version 2.10.4 (closes #1608). commit 6d8c6c2adc07485e3c7e29134516207db523dc8d Author: Alan Garny Date: Wed Apr 11 09:37:41 2018 +1200 Slight update to our downloads page (#1608). commit 5b1d41a3e06bd7b62b9ad74f22237968bcf0fe35 Author: Alan Garny Date: Wed Apr 11 09:36:00 2018 +1200 Stop building only QScintilla (#1608). commit 35ead2a9f3db5c7d88934f2d7749dcefc6bb87b7 Author: Alan Garny Date: Wed Apr 11 09:35:05 2018 +1200 QScintilla: generated Windows, Linux and macOS binaries for version 2.10.4 (#1608). commit 4b815820655d369482b6943ec5e780a9895a6be7 Author: Alan Garny Date: Wed Apr 11 09:22:38 2018 +1200 Only build QScintilla (#1608). commit b6cff4948ae403545aa3c5b9ad1d4cfa3848303b Author: Alan Garny Date: Wed Apr 11 09:18:27 2018 +1200 Only build QScintilla (#1608). commit f86791ce9c5fe8cb309d11df8766d4a7e2c42a59 Author: Alan Garny Date: Wed Apr 11 09:16:02 2018 +1200 Getting read to build QScintilla 2.10.4 (#1608). commit cb181e0276640c09b18333a672762553cfb29d85 Author: Alan Garny Date: Wed Apr 11 09:02:56 2018 +1200 Only build QScintilla (#1608). commit 12734b58ced194425f903b4a2593845473686312 Author: David Brooks Date: Tue Apr 10 20:25:29 2018 +1200 Converted CMake language commands and our macros to lower case. commit 86d5c0b8b3f5545cf688c5643e523b1ca34ff90d Author: David Brooks Date: Tue Apr 10 20:00:36 2018 +1200 Python: export ${SPHINX_BUILD_EXECUTABLE} to CMake. commit 8d20acfeece94a86b65ea50b9d49fb766e5a8423 Author: David Brooks Date: Tue Apr 10 19:54:44 2018 +1200 Python: script tidy up. commit 265cc8c75fafea83e00542f3b8a13e04dd9586a4 Author: David Brooks Date: Tue Apr 10 19:54:20 2018 +1200 Python: export ${PYTHON_RELATIVE_RUNTIME_DIR} to CMake. commit f178665abc706aa9af8911bb63b0334e6d4c7cb3 Author: David Brooks Date: Tue Apr 10 19:53:15 2018 +1200 Python: update `pip`, `setuptools` and `wheel` to latest versions. commit 6ba77515916164fb8e494a10d123d5272d1d1469 Author: David Brooks Date: Tue Apr 10 19:52:17 2018 +1200 Python: don'\''t apply patches for Windows when not building a Windows Python... commit 58e262988071912c2e660fb9af9b68e74ce84072 Author: David Brooks Date: Tue Apr 10 19:51:20 2018 +1200 Python: ignore sub-directories when updating Python runtime path in scripts. commit 548ac2dbfe2f44d6eb883ac2de71e6f5fdc314b7 Author: David Brooks Date: Tue Apr 10 19:49:34 2018 +1200 Python: only build Python and PythonPackages plugin, with `sphinx` as the only package. commit c5823b693fcedf1ceb9d01e3bd212c55a5fb642d Author: Alan Garny Date: Tue Apr 10 18:06:55 2018 +1200 Simulation Experiment view: improved the finalisation of our graph panel / graphs widget (#1574). commit 12a27013720f09318bdf4bfcd330697b6baf74bf Author: Alan Garny Date: Tue Apr 10 17:49:43 2018 +1200 Simulation Experiment view: improved the finalisation of our graph panel / graphs widget (#1574). commit 9ba0ac9ae4c9b8826a9fced64da69bd4fff558f3 Author: Alan Garny Date: Tue Apr 10 15:56:03 2018 +1200 Simulation support: make the deletion of our simulation results safer (#1574). commit 80b6ae5ad0532d9eaab799a572560f25c9dbc4af Author: Alan Garny Date: Tue Apr 10 15:54:36 2018 +1200 Some minor cleaning up. commit 474d841adc5aa0ff884f18cf1dde6e9f81f73756 Author: Alan Garny Date: Tue Apr 10 11:27:56 2018 +1200 General: have our different arrays initialised upon creation (#1574). Who knows, this might actually address our issue #1574… commit dc708e647f25c776218ebe595a66b203835b8297 Author: Alan Garny Date: Tue Apr 10 11:04:03 2018 +1200 Reverting commit 62547f2 (#1574). commit 62547f28af30f8d08554ac966e0b24f787df6152 Author: Alan Garny Date: Tue Apr 10 08:35:57 2018 +1200 Simulation support: make sure that our various arrays are properly reset when destroyed (#1574). commit d4ea5576d1ccb27151a0bfcbf32c50b9b71489bc Author: David Brooks Date: Mon Apr 9 22:22:50 2018 +1200 Data store: make sure arrays are initialised when allocated. commit 11e1047884c198103fd64c77bde132d124ebe42c Merge: aff9ff360 2a67e9ef5 Author: Alan Garny Date: Mon Apr 9 19:50:15 2018 +1200 Revert part of issue #1574. commit 2a67e9ef5042341c1e77399fb8bb78f124317323 Author: Alan Garny Date: Mon Apr 9 18:25:20 2018 +1200 Removed our (temporary) test files. commit 0bcbfe480c19c7ef304d0d6c0616ed5df4a10195 Author: Alan Garny Date: Mon Apr 9 18:20:31 2018 +1200 Reverted commit 2f38478 (#1574). Indeed, our “solution” could have some side effect and it’s not guaranteed that it was the “solution” to the random crashes observed in issue #1574. Regarding the side effect, imagine the case were the Simulation Experiment view for file A refers to file B. Then, if we were to modify and reload B while in some editing view, the Simulation Experiment view of B wouldn’t get reloaded, which means that to switch to A would result in its Simulation Experiment view being out of sync with B. commit 05fa27ca2f0a12952e9d69874c50d8971b704192 Merge: da6674447 aff9ff360 Author: Alan Garny Date: Mon Apr 9 18:01:43 2018 +1200 Merge branch '\''master'\'' into test. commit e0155a9a53f43685265f2b9de2aebd98b6776af9 Merge: 064b09df6 aff9ff360 Author: Alan Garny Date: Mon Apr 9 18:01:06 2018 +1200 Merge branch '\''master'\'' into issue1544. commit aff9ff3608685930a11a06c571d37aeb35db1385 Merge: 463b14e45 5e076df83 Author: Alan Garny Date: Mon Apr 9 17:34:13 2018 +1200 Various cleaning up. commit 5e076df837b609087a633d03151b96a9aabba49c Author: Alan Garny Date: Mon Apr 9 17:02:45 2018 +1200 Some minor cleaning up. commit a0d558ea59db41beaa386cb96736175ef53f4cd3 Author: Alan Garny Date: Mon Apr 9 16:37:29 2018 +1200 Minor code cleaning up (#1603). commit 3cee6afd2f36c008ab8a4a3c594f5c6e124c9f78 Merge: 19f11dc22 463b14e45 Author: Alan Garny Date: Mon Apr 9 16:27:03 2018 +1200 Merge remote-tracking branch '\''opencor/master'\''. commit 19f11dc22eff2a7c144dee597df3f523c81a59a3 Author: Alan Garny Date: Mon Apr 9 16:21:34 2018 +1200 Some minor cleaning up with regards to our use of QString::arg(). commit 463b14e452fecb04d8c3ff4864ce15eb53f2181c Author: Alan Garny Date: Mon Apr 9 15:21:02 2018 +1200 Minor code cleaning up (#1603). commit 87932f3c1f154aae8b9ada03e704136b84b5e67e Author: David Brooks Date: Mon Apr 9 15:00:49 2018 +1200 Python: fix bad merge. commit c4f538611b06302831afc468397a172b375f4d15 Merge: 4cb2c66c6 e5481d5f3 Author: Alan Garny Date: Mon Apr 9 14:55:28 2018 +1200 Merge remote-tracking branch '\''opencor/master'\''. commit 4cb2c66c66d6f77e2fcaa8decaac996e9dc75bf5 Author: Alan Garny Date: Mon Apr 9 14:55:00 2018 +1200 Some minor cleaning up with regards to our use of QString::number(). commit 5fb4cc479d19eee1a03c815cb75f817760d39a92 Merge: 6f95da59d e5481d5f3 Author: David Brooks Date: Mon Apr 9 14:54:52 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit e5481d5f31748f92d4a44f763156c4ab3be66e84 Author: Alan Garny Date: Mon Apr 9 14:47:12 2018 +1200 Minor code cleaning up (#1603). commit 3eb2b34842c75757e7741095aecf1bfaf183d50a Merge: 663a89524 8d0a155d2 Author: Alan Garny Date: Mon Apr 9 14:44:57 2018 +1200 Minor code cleaning up. commit 973d84bc581dc626bbaefa7ba428deca3f1907d1 Author: Alan Garny Date: Mon Apr 9 14:15:07 2018 +1200 Some minor cleaning up with regards to our use of QWidget::setStyleSheet(). commit 8d0a155d2e305883104973c9e16143a1a74f2650 Author: David Brooks Date: Mon Apr 9 14:11:36 2018 +1200 Minor code cleaning up. commit aaa7c6ad3d3fabac37df98bed02a7ea4e69b67ed Author: David Brooks Date: Mon Apr 9 14:03:23 2018 +1200 Minor code cleaning up. commit 064b09df632236eece92a4fcae66655586cd78f7 Author: Alan Garny Date: Mon Apr 9 13:08:30 2018 +1200 Slight improvements to our main CMakeLists.txt file (#1544). commit 53f8f5caa3572d439a1d64cdc44852ae56bcd520 Author: Alan Garny Date: Mon Apr 9 12:52:37 2018 +1200 Correctly retrieve the Sphinx version on Linux (#1544). commit a95fdb036030c73725b2239ad1d90d08ddd3b323 Author: Alan Garny Date: Mon Apr 9 11:49:11 2018 +1200 Check whether we can build the Sphinx-based documentation (#1544). commit 6f95da59d9eca16d05726ca62d6c0710aba65d05 Author: David Brooks Date: Mon Apr 9 09:18:31 2018 +1200 Python: tidy code. commit 697f6030c8fb3a44948965c39c1dbbf359a7e20c Merge: 52aa9e2b0 663a89524 Author: David Brooks Date: Sun Apr 8 22:01:11 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 52aa9e2b0c0bccc8c8b99c9602686b8a0af2a86b Author: David Brooks Date: Sun Apr 8 21:57:35 2018 +1200 Python: delete gradients array before creating a new gradients data store **not** when deleting the simulation'\''s data arrays. commit 9de1454bfc7c6c9985f8dcb1eb348a087ce67f86 Author: David Brooks Date: Sun Apr 8 21:52:34 2018 +1200 Python: resetting parameters and clearing results are two different things... commit 40e028a9ca0d47e20ff8fda57e9ace2830c89200 Author: David Brooks Date: Sun Apr 8 09:37:25 2018 +1200 Python: delete DataStoreArrays when their ref count reaches zero. commit 0c29fa0884935c57b5ba458433f9472ec18bb4b4 Author: David Brooks Date: Sat Apr 7 09:21:02 2018 +1200 Python: let our simulation widget know a run is starting. commit 37fac5c5cdbb2bb8f148908a022538684e15f027 Author: David Brooks Date: Sat Apr 7 09:20:06 2018 +1200 Use new style signal/slot connect() and tidy code. commit da667444754a2f8f850d3f37d425376ef4eb3a04 Author: Alan Garny Date: Fri Apr 6 16:48:20 2018 +1200 Added some test SED-ML/CellML files. Open models/tests/bg_files/ca_dynamics_bg_1.sedml. commit 015423243a39490e37e047f8ffdbef44f66b7060 Merge: 5f5a757a4 6d150f29a Author: David Brooks Date: Fri Apr 6 16:40:31 2018 +1200 Merge branch '\''master'\'' into pythonplugin commit 2033ff17aed33561992112f4deec8e77b80f2bba Merge: d8e2330ce 663a89524 Author: Alan Garny Date: Fri Apr 6 15:07:28 2018 +1200 Merge remote-tracking branch '\''opencor/master'\'' into issue1544. commit 663a895248c7d1795fbd799f885d658b82c6a574 Author: Alan Garny Date: Fri Apr 6 15:03:20 2018 +1200 Slight update to our main CMakeLists.txt file. commit 5f5a757a437d3bb418c5b36611f9a51de59e023f Merge: e0e794fea 183335b11 Author: David Brooks Date: Fri Apr 6 14:51:25 2018 +1200 Merge commit '\''183335b11'\'' into pythonplugin commit 6d150f29a0e3949d2fe54f033201cdcbe163cff9 Merge: 0f6eeffb8 063e4b32e Author: Alan Garny Date: Fri Apr 6 14:21:23 2018 +1200 CellML support: slight improvement to our error reporting. commit 063e4b32ebd9014e8fce1f9137bb428ec3462c62 Author: Alan Garny Date: Fri Apr 6 13:50:16 2018 +1200 CellML support: slight improvement to our error reporting. commit 0f6eeffb80d5f4892d9fc2b3997ae5ef10d7293b Author: Alan Garny Date: Fri Apr 6 13:44:57 2018 +1200 Some minor cleaning up. commit e0e794fea78ed264d33074b99a90c1c0b7be9559 Author: David Brooks Date: Fri Apr 6 11:57:05 2018 +1200 Python: fixes and tidy ups after merging. commit d8e2330ceaacab7eb4ce30b37055ad58900f1a85 Merge: e7d93f936 b83f340a8 Author: Alan Garny Date: Fri Apr 6 11:50:30 2018 +1200 Merge branch '\''master'\'' into issue1544. commit b83f340a863280fbba0c31bf08d0a4b43b1ee698 Merge: 6416fd74a 296b207ab Author: Alan Garny Date: Fri Apr 6 11:47:59 2018 +1200 Some minor cleaning up. commit 296b207ab00597b0e7e2e553efe61e330840ef5e Author: Alan Garny Date: Fri Apr 6 11:12:41 2018 +1200 Some minor cleaning up (#1592). commit 130836e096e31750ddea07d41809d1606a19542e Author: David Brooks Date: Thu Apr 5 21:28:14 2018 +1200 Merge commit '\''2b65c99'\'' into pythonplugin commit 6416fd74a3e37b93b2f5e23ae8d546ddb714bce7 Author: Alan Garny Date: Thu Apr 5 11:13:46 2018 +1200 Some minor cleaning up. commit df6530d3b6bc90dab4a997fcd65d5d1075a10c86 Merge: ad0e5ebba ab69a032c Author: Alan Garny Date: Thu Apr 5 11:11:20 2018 +1200 Fixed some seemingly random crashes may occur (especially on Windows) (closes #1574). commit ab69a032cb432c7b7cf0e38986ce980803a59c28 Author: Alan Garny Date: Thu Apr 5 10:36:15 2018 +1200 Slight update to our downloads page (#1574). commit e48b022b2f131d6cc25fd56d0e806fdd557d6cb4 Author: Alan Garny Date: Thu Apr 5 10:00:05 2018 +1200 Some minor cleaning up. commit e7d93f936fd8c9955cda4a14160c4f92ea8b7b8d Merge: c221f6293 ad0e5ebba Author: Alan Garny Date: Thu Apr 5 09:18:32 2018 +1200 Merge branch '\''master'\'' into issue1544. commit c345180ce7b3835e57f5ba7064b7bb482864194c Merge: 5736e1512 ad0e5ebba Author: Alan Garny Date: Wed Apr 4 20:15:49 2018 +1200 Merge branch '\''master'\'' into issue1574. commit ad0e5ebbaf164dca5ceff799d3279743b8463e74 Merge: a7c75d137 dea4690d9 Author: Alan Garny Date: Wed Apr 4 20:05:37 2018 +1200 General: improved the overall quality of our code (closes #1592). commit dea4690d97f85b473459b13a5e687c5ccf24ea7b Author: Alan Garny Date: Wed Apr 4 19:33:15 2018 +1200 Some minor cleaning up (#1592). This ensures that we can build QSctintilla and still have our Editing widget to build fine on Linux commit e010c7167464b1daa105723ca87caed6356aa811 Merge: c77cf0197 7ac99e445 Author: David Brooks Date: Wed Apr 4 18:14:37 2018 +1200 Merge commit '\''7ac99e4'\'' into pythonplugin commit d293a03edba35bcda111d99d04093bf5c111d49e Author: Alan Garny Date: Wed Apr 4 18:00:11 2018 +1200 Redisable our sample plugins, test plugins and tests. commit c77cf01971e47dbca6a7a1dd2fdc9edc56a2c0a7 Merge: d68c87c2a 352da1458 Author: David Brooks Date: Wed Apr 4 17:55:33 2018 +1200 Merge commit '\''352da14'\'' into pythonplugin commit ba7935dbac0ef2136e03febfbc70ab49b09d61b2 Author: Alan Garny Date: Wed Apr 4 17:54:50 2018 +1200 Some minor cleaning up (#1592). commit 995e63acf56b52e4e33b6472cf7a30eeedd03a33 Author: Alan Garny Date: Wed Apr 4 17:44:00 2018 +1200 Some work on replacing automatic signals on_XXX_YYY() with a proper connection (#1592). commit 4a045430049a0a8dcb947ab77d2e06aace2874e3 Author: Alan Garny Date: Wed Apr 4 17:37:54 2018 +1200 Some work on replacing automatic signals on_XXX_YYY() with a proper connection (#1592). commit d68c87c2aaed21462412f978eb48eba1915dac54 Author: David Brooks Date: Wed Apr 4 16:41:31 2018 +1200 Merge commit '\''76cd773'\'' into pythonplugin commit 7c30c015349e0bd3333828a2760b4b27738b3754 Author: Alan Garny Date: Wed Apr 4 17:22:53 2018 +1200 Some work on replacing automatic signals on_XXX_YYY() with a proper connection (#1592). commit 8ee75e1fb0f2b7ec8aa06468ed7785d8fef06a46 Merge: 2c2b36dd3 1ce99e6f7 Author: David Brooks Date: Wed Apr 4 16:09:15 2018 +1200 Merge commit '\''1ce99e6'\'' into pythonplugin commit 2c2b36dd30b0a11281489485dea23879fbf87956 Merge: f1b666e6d 503920fdd Author: David Brooks Date: Wed Apr 4 15:56:00 2018 +1200 Merge commit '\''503920f'\'' into pythonplugin commit f1b666e6dbcdecce07e02335f36f87f5db81c422 Merge: 0ac1b1f37 6b14cae46 Author: David Brooks Date: Wed Apr 4 15:55:38 2018 +1200 Merge commit '\''6b14cae'\'' into pythonplugin commit 0ac1b1f371282a9122f983921519f725bc2468ef Merge: d52b21300 e2b282e7d Author: David Brooks Date: Wed Apr 4 15:55:19 2018 +1200 Merge commit '\''e2b282e'\'' into pythonplugin commit d52b2130022a4b7d9fc2698d8995ffc4370661c3 Merge: 2711f1aff 958243515 Author: David Brooks Date: Wed Apr 4 15:54:50 2018 +1200 Merge commit '\''9582435'\'' into pythonplugin commit 3b94f4262c23cbf35d96c65509d35cbf23cb0eb9 Author: Alan Garny Date: Wed Apr 4 15:53:24 2018 +1200 Some work on replacing automatic signals on_XXX_YYY() with a proper connection (#1592). commit 2711f1affa86e2b1c29ed23e7981d658934e4210 Merge: b1b650e51 f038353b9 Author: David Brooks Date: Wed Apr 4 15:52:51 2018 +1200 Merge commit '\''f038353'\'' into pythonplugin commit 1f17877ec130933cbd31572d84275eca2a106e7e Author: Alan Garny Date: Wed Apr 4 15:37:15 2018 +1200 Some minor cleaning up (#1592). commit b1b650e510d4773b080563fde8c9d3aede0895f9 Author: David Brooks Date: Wed Apr 4 15:11:08 2018 +1200 Python: use better names for `double *` arrays. commit f0e4e2c247afa61dddab1adbae18646c909d4a71 Author: Alan Garny Date: Wed Apr 4 14:49:28 2018 +1200 Some minor cleaning up (#1592). commit 626d02aeeecbab125e81c05b838e67a52f4039e7 Author: Alan Garny Date: Tue Apr 3 00:25:08 2018 +1200 Some minor cleaning up (#1592). Removed our use of full namespaces since we don’t need them with the new signal/slot mechanism. commit 4e4f691fd5430392806c9ea3ecf899f6e96b7efe Merge: bbe7fff41 4a418f39b Author: David Brooks Date: Wed Apr 4 14:33:14 2018 +1200 Merge commit '\''4a418f3'\'' into pythonplugin commit bbe7fff411ae2fbcf51bbb9fa0c70d60749d6d88 Merge: ad4ae6d48 6f3219366 Author: David Brooks Date: Wed Apr 4 14:31:45 2018 +1200 Merge commit '\''6f32193'\'' into pythonplugin commit df284b19353827a774db2ea0e26361d7b542372e Author: Alan Garny Date: Mon Apr 2 20:36:53 2018 +1200 Some minor cleaning up (#1592). commit 165087bac72d5ccdd13b064a5c0b9f4c5902f506 Author: Alan Garny Date: Mon Apr 2 19:49:42 2018 +1200 Some minor cleaning up. commit 63167c55e4dc6c4991a14e6012580b6a36fa8135 Author: Alan Garny Date: Mon Apr 2 19:31:11 2018 +1200 Removed a file that we forgot to delete at some point. commit c908059de5b245e03252b1c1b80f99e9722d41f7 Author: Alan Garny Date: Mon Apr 2 19:30:43 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 7bc60410829c7211c313f19c4c28795a9acc75d7 Author: Alan Garny Date: Wed Apr 4 14:01:56 2018 +1200 Some minor cleaning up (#1592). commit ff96cce204ee90dffe2c5e9d510036e248bba0b9 Author: Alan Garny Date: Mon Apr 2 19:22:16 2018 +1200 Some minor cleaning up (#1592). commit c41af1fd90836eeb90fa8c6dd0de292045592e07 Author: Alan Garny Date: Wed Apr 4 13:56:36 2018 +1200 Some minor cleaning up (#1592). commit ad4ae6d4852607c54a44179c0c6930505eb6044b Merge: c7cf6ccaa 0761532fb Author: David Brooks Date: Wed Apr 4 11:22:09 2018 +1200 Merge commit '\''0761532'\'' into pythonplugin commit c7cf6ccaa1164afc3be80159f3adb953e6673794 Merge: 1eaaaddd7 5ca1a92f7 Author: David Brooks Date: Wed Apr 4 11:14:59 2018 +1200 Merge commit '\''5ca1a92'\'' into pythonplugin commit 1eaaaddd77b73641f2b556bcf3548fe38f2830a8 Merge: d2e6a822b 641e1011a Author: David Brooks Date: Wed Apr 4 11:14:02 2018 +1200 Merge commit '\''641e1011a2f3b901554566e693de85a0d347fd89'\'' into pythonplugin commit d2e6a822bec190bc0ac0a538722601b41a5390bf Merge: 910002cc6 2ef5bafc0 Author: David Brooks Date: Wed Apr 4 11:13:34 2018 +1200 Merge commit '\''2ef5baf'\'' into pythonplugin commit 910002cc65b9c38862db86c3fb8993ca5d6c9c25 Merge: c09fe3b72 99c49e213 Author: David Brooks Date: Wed Apr 4 11:12:40 2018 +1200 Merge commit '\''99c49e2'\'' into pythonplugin commit 2657147de22113fc27298e007c2a1d9c7af23ad1 Author: Alan Garny Date: Mon Apr 2 19:11:10 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 01ba2d37791037924c2569fab76f3fb92469905d Author: Alan Garny Date: Wed Apr 4 10:27:24 2018 +1200 Some minor cleaning up (#1592). commit c81386f7892ffe4a354351c0a85df9a5da3c1a2e Author: Alan Garny Date: Mon Apr 2 18:19:36 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit bdeaa02827044a4dbf6656f237ab8a2f19b04414 Author: Alan Garny Date: Wed Apr 4 09:31:49 2018 +1200 Some minor cleaning up (#1592). commit 6452f489f8974869ce5c0553f353c4721c16122e Author: Alan Garny Date: Mon Apr 2 17:36:18 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 16ccb42e469c7525e5755e967095a4a7922c6bdd Author: Alan Garny Date: Tue Apr 3 22:58:58 2018 +1200 Some minor cleaning up (#1592). commit 9b70ad67821bce50bf40d2c1a0499b5fe599f6cb Author: Alan Garny Date: Mon Apr 2 16:05:45 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 9f15cedac4b40192ee900acc7550d9773e516cb9 Author: Alan Garny Date: Tue Apr 3 18:55:20 2018 +1200 Some minor cleaning up (#1592). commit 36080098763d65cd2e007bb23db60378c93cde13 Author: Alan Garny Date: Mon Apr 2 09:35:56 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit be53e52c915f272dd1ec4a5f3937f272062c22e6 Author: Alan Garny Date: Mon Apr 2 08:57:04 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit badd5a5cce4c3161a34822d59580ae36d1372846 Author: Alan Garny Date: Tue Apr 3 18:05:28 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit bb1ff61098372885f752c318df710e9b6dff915e Author: Alan Garny Date: Tue Apr 3 16:35:08 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit b28369ee36f18fe24ffa9c915209d0596c840e0d Author: Alan Garny Date: Sun Apr 1 20:22:53 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit adbe687f6cabcd221079dc82b366c9096fe7de8e Author: Alan Garny Date: Tue Apr 3 14:52:07 2018 +1200 Temporarily enable sample plugins, test plugins and tests. commit 50626750d56abba54f52b00c8213edfb651a2a01 Author: Alan Garny Date: Tue Apr 3 14:50:27 2018 +1200 Some minor cleaning up (#1592). commit 843cf63879557d16e096cf2d8ca40cd29d83e152 Author: Alan Garny Date: Sun Apr 1 18:51:19 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 6a19d8ddee19b865af5c5cea9cd5ca987426c529 Author: Alan Garny Date: Sun Apr 1 18:42:30 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit a81dcb918ed0c869254af473da12d18ee9d0e8e9 Author: Alan Garny Date: Tue Apr 3 14:23:09 2018 +1200 Some minor cleaning up (#1592). commit f2224355158342956da91525e81787226b2e0c25 Author: Alan Garny Date: Sun Apr 1 18:01:08 2018 +1200 Some work on using the "new" signal/slot syntax (#1592). commit 82d940c5ff90771b6864545a16edd771e80d42db Author: Alan Garny Date: Sun Apr 1 16:33:45 2018 +1200 Replaced `Qt::CTRL` with `Qt::ControlModifier`, `Qt::SHIFT` with `Qt::ShiftModifier`, `Qt::ALT` with `Qt::AltModifier` and `Qt::META` with `Qt::MetaModifier` (#1592). commit 4ef87af5de46c6c5ddb865ae58c7155a848197e6 Author: Alan Garny Date: Sun Apr 1 16:24:00 2018 +1200 Replaced instances of `const quint64 &` with `quint64` (#1592). commit bbc1bf2709499d7f2f2f1099648cf22539462036 Author: Alan Garny Date: Sun Apr 1 16:21:48 2018 +1200 Replaced instances of `const qint64 &` with `qint64` (#1592). commit c7278e76b9ba90b907ba1bc089e60c34fdeda438 Author: Alan Garny Date: Sun Apr 1 16:18:22 2018 +1200 Replaced instances of `const double &` with `double` (#1592). commit f0107d50ce8bc2098bbd6600da5b148e92f821b5 Author: Alan Garny Date: Sun Apr 1 15:35:19 2018 +1200 Replaced instances of `const bool &` with `bool` (#1592). commit 47c7ac41d0f7b7f4cde177fe24c76cdf30fc5fd6 Author: Alan Garny Date: Sun Apr 1 14:58:08 2018 +1200 Replaced `virtual` with `override` in overridden methods (#1592). commit 08e0f1e1c4324dd29f626ab2fbef23944dbb1cc9 Author: Alan Garny Date: Sun Apr 1 10:56:37 2018 +1200 Some minor cleaning up. commit a86fb6e826e057123ef8d18ed72b278e18ba001f Author: Alan Garny Date: Sun Apr 1 10:48:30 2018 +1200 Some minor cleaning up. commit b34d712a3ff18206ad0a36dc4a6405fd61a5b086 Author: Alan Garny Date: Fri Mar 30 20:30:48 2018 +1300 Added a closing `// namespace UI` here and there (#1592). commit c221f629324cd8071201bd3ec5e8525b6bc72ff8 Merge: fd56efa29 a7c75d137 Author: Alan Garny Date: Thu Mar 29 19:52:31 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 5736e15126cc2f9e4bf0bf6e25217a8bc55ad906 Author: Alan Garny Date: Thu Mar 29 19:51:51 2018 +1300 PMR Workspaces window: only refresh our workspaces and changes if we are visible (#1574). Indeed, we were refreshing our workspaces all the time, even if the PMR Workspaces window wasn’t visible. So, I wonder whether this might not have been the cause of some of our random crashes?… commit a6e37f50b479db62ac2ed36001d2d320e2b80ca8 Author: Alan Garny Date: Thu Mar 29 19:32:58 2018 +1300 Some minor cleaning up. commit 0dbeb36976ea9b0d0d39d6b4bbc07f327823c1b0 Author: Alan Garny Date: Thu Mar 29 18:11:27 2018 +1300 Merge branch '\''master'\'' into issue1574. commit a7c75d1370974f652a587f267a8208b777d19f1b Merge: 3b1feeb10 40c2cc680 Author: Alan Garny Date: Thu Mar 29 18:05:53 2018 +1300 CellML support: now provide more information when imports cannot be fully instantiated (closes #1595). commit 40c2cc6808aa3f3d81852433dbb1e16cb2afea05 Author: Alan Garny Date: Thu Mar 29 17:31:29 2018 +1300 Slight update to our downloads page (#1595). commit fc2b453d27db0d1bf5ac9b240fd3cecbac46a9e7 Author: Alan Garny Date: Thu Mar 29 17:31:02 2018 +1300 CellML support: provide more information when imports cannot be fully instantiated (#1595). commit a7f0e47584204514b5dd8b9dec39ff6759339886 Author: Alan Garny Date: Thu Mar 29 17:05:43 2018 +1300 CellML support: provide more information when imports cannot be fully instantiated (#1595). commit d8243fcafb3f2c7e9e53cd555243f557f08379b1 Author: Alan Garny Date: Thu Mar 29 16:49:21 2018 +1300 Some minor cleaning up. commit 3b1feeb1088f92f4730ef7922d7715789448a390 Merge: 1e2f43822 edda62f9f Author: Alan Garny Date: Thu Mar 29 15:33:09 2018 +1300 PMR Workspaces window: fixed a problem that resulted in the the window being empty until reauthentication (closes #1581). commit edda62f9feb20c65ecb9304ba8ef32a0dc0b696d Author: Alan Garny Date: Thu Mar 29 15:02:12 2018 +1300 Slight update to our downloads page (#1581). commit a3cff3dd199316f96d85afcc4fe0ea8c800eddb5 Author: Alan Garny Date: Thu Mar 29 14:59:39 2018 +1300 PMR Workspaces window: show warning/information messages that get generated at startup (#1581). commit 9132ea6bd394b940c88a3a6f787c4d882b9f14e6 Author: Alan Garny Date: Thu Mar 29 14:33:48 2018 +1300 Some minor cleaning up. commit 87132002a13e67b4dfca783281592c5d81aa9501 Author: Alan Garny Date: Thu Mar 29 14:11:11 2018 +1300 Some minor refactoring. commit 1e2f43822ba6559925c6e720bfb50134f7791fc6 Merge: 8eb9a946f 33554910b Author: Alan Garny Date: Thu Mar 29 12:06:16 2018 +1300 libgit2: upgraded to version 0.27.0 (closes #1588). commit 33554910bde8c847513692e49d147fa2f46d8ea9 Author: Alan Garny Date: Thu Mar 29 11:19:14 2018 +1300 Slight update to our downloads page (#1588). commit b3127b34861bdeef4e2afe24208730a4911dd4d5 Author: Alan Garny Date: Thu Mar 29 11:17:00 2018 +1300 Don'\''t build libgit2 only anymore (#1588). commit a7d472709f73ad0b67508bbb453048ac01827364 Author: Alan Garny Date: Thu Mar 29 11:12:58 2018 +1300 libgit2: generated binaries for version 0.27.0 (#1588). commit 0c05243de8c459b8749a941716b5f079d18808da Author: Alan Garny Date: Thu Mar 29 10:34:21 2018 +1300 libgit2: getting ready to build version 0.27.0 (#1588). commit 57e1ef6162017522201a0e293518edf44107b6af Author: Alan Garny Date: Thu Mar 29 10:32:01 2018 +1300 libgit2: getting ready to build version 0.27.0 (#1588). commit aed7aa96037232a33fc4cd7ca39f67645c2377a6 Author: Alan Garny Date: Thu Mar 29 10:29:03 2018 +1300 libgit2: getting ready to build version 0.27.0 (#1588). commit c2f211b61bf18eeaca4ee68e47c84b8903ec6edc Author: Alan Garny Date: Thu Mar 29 10:27:43 2018 +1300 Build libgit2 only (#1588). commit 8eb9a946fa9f2431b359b7f399997fb91d621718 Merge: 504b47e3c 315a54878 Author: Alan Garny Date: Wed Mar 28 14:58:22 2018 +1300 libgit2: have libgit2 use our copy of zlib rather than the one provided by the system (closes #1577). commit 315a548780c59271e1bca6012e04ae7150499249 Author: Alan Garny Date: Wed Mar 28 14:15:43 2018 +1300 Slight update to our downloads page (#1577). commit fb3baaf6c92fbfd75d3f04e686c4d89a2ec7ba2c Author: Alan Garny Date: Wed Mar 28 14:13:07 2018 +1300 Don'\''t only build libgit2 (#1577). commit 58bd039195489a8e555034ba04f7c13d78f433c3 Author: Alan Garny Date: Wed Mar 28 14:12:27 2018 +1300 libgit2: new binaries that take advantage of our copy of zlib (#1577). commit ca0a4d223255db1f0ff28b109879d9abde184be6 Author: Alan Garny Date: Wed Mar 28 13:56:05 2018 +1300 libgit2: use our copy of zlib rather than the one provided by the system (#1577). commit e0c9b3ac75174ef89ecfbcef170d3a13ad8b1c1f Author: Alan Garny Date: Wed Mar 28 13:01:22 2018 +1300 Build libgit2 only (#1577). commit 1b07c82dddfba80b6f8d173fd7f8f46408aca2e4 Author: Alan Garny Date: Wed Mar 28 12:59:56 2018 +1300 libgit2: use our copy of zlib rather than the one provided by the system (#1577). commit 504b47e3c445218527fa070736bfde453f6166df Merge: 9fa1da54e 23b79390d Author: Alan Garny Date: Wed Mar 28 12:45:32 2018 +1300 OpenSSL: upgraded to version 1.0.2o (closes #1589). commit 23b79390d357a393eb63581bec28e75226e15dfb Author: Alan Garny Date: Wed Mar 28 11:47:36 2018 +1300 Slight update to our downloads page (#1589). commit 70c6165d810784237be64806b00df49a6df94de7 Author: Alan Garny Date: Wed Mar 28 11:46:58 2018 +1300 OpenSSL: generated the different binaries for version 1.0.2o of OpenSSL (#1589). commit ff853860498c831cbd9b77ebf8084efb3c10fa1d Author: Alan Garny Date: Wed Mar 28 11:39:20 2018 +1300 Stop building OpenSSL only (#1589). commit deb42594c3a38f940a627e069279f01863b6ce1f Author: Alan Garny Date: Wed Mar 28 11:17:10 2018 +1300 OpenSSL: now build version 1.0.2o of OpenSSL (#1589). commit 05ddd8b9d03b2ca74e1ba1cac04fedcdd974c9f8 Author: Alan Garny Date: Wed Mar 28 11:10:16 2018 +1300 Building OpenSSL only (#1589). commit 9fa1da54eec0a0bc1f76c42cdb37827666c03419 Merge: c182552e8 a105cbbb8 Author: Alan Garny Date: Sun Mar 25 18:43:59 2018 +1300 Various minor improvements. commit a105cbbb80cef1ad067f9930604dbf41d662fc0c Author: Alan Garny Date: Sun Mar 25 18:02:17 2018 +1300 Don'\''t build libgit2 manually anymore. commit db033f00ee0add0c2ed37a70cc0ed87bcdbd73c5 Author: Alan Garny Date: Sun Mar 25 17:57:31 2018 +1300 Had to rebuild our macOS copy of OpenSLL (after I deleted it by mistake!). commit 0b2e15133f4ecb334d89460a4b95977dd6a0338a Author: Alan Garny Date: Sun Mar 25 16:17:18 2018 +1300 libgit2: only define APPLESECURITY when on macOS. commit 17037314a489cf8031f01d002084ab3dacb67f94 Author: Alan Garny Date: Sun Mar 25 16:08:36 2018 +1300 (Temporarily) build libgit2. commit ede4dd3752c6d9c56928b0cee6172a8b488ec6de Author: Alan Garny Date: Sun Mar 25 15:59:47 2018 +1300 libgit2: make sure that we officially rely on OpenSSL. This is mainly so that our Plugins dialog shows that dependency, not least since that OpenSSL is currently only used by our copy of libgit2. commit c182552e8c859d0ec7789b493c975f18045e7a97 Author: Alan Garny Date: Sun Mar 25 15:06:59 2018 +1300 Some minor cleaning up [ci skip]. commit ad98a5f343483db03a22595cc0d272f6e4c5ddb1 Merge: c3fb272ac 035dc5fa9 Author: Alan Garny Date: Sat Mar 24 21:15:29 2018 +1300 PMR support: updated the description of our different PMR instances (closes #1583). commit 035dc5fa996476c40da3615b58fe35745d5d33ad Author: Alan Garny Date: Sat Mar 24 20:13:02 2018 +1300 Slight update to our downloads page (#1583). commit 0ac7c758517d420c67d87180ad77b2edccdcb6cb Author: Alan Garny Date: Sat Mar 24 20:11:39 2018 +1300 PMR support: updated the description of our different PMR instances (#1583). commit c3fb272ac02050777563500c5f61da97532d317e Merge: ac4fae0e2 8b1f95244 Author: Alan Garny Date: Sat Mar 24 19:51:35 2018 +1300 PMR support: fixed a problem with the PMR Workspaces window potentially not reflecting the Git status of a folder (closes #1582). commit 8b1f9524405b5b830a73dca517179368b64e568d Author: Alan Garny Date: Sat Mar 24 18:52:32 2018 +1300 Slight update to our downloads page (#1582). commit 6b8fc1df9b4e0de0d4c7409d639309df91729b79 Author: Alan Garny Date: Sat Mar 24 18:48:03 2018 +1300 PMR Workspaces window: can now only check/uncheck unstaged files in our synchronise dialog (#1582). commit cf79ca053407da73a4b6382df2a71c5dce27f77f Author: Alan Garny Date: Sat Mar 24 18:41:48 2018 +1300 PMR Workspaces window: slight improvement to the way we select file items in our synchronise dialog (#1582). Before, we could have file item #1 selected, check file item #2 (which is not selected) and have file item #1 automatically checked too while only file item #2 should be checked. commit 270acccdcb5a6c7364d1b8bc2e403aab88a28b32 Author: Alan Garny Date: Sat Mar 24 18:37:50 2018 +1300 PMR Workspaces window: prevent staged files from being selectable in our synchronise dialog (#1582). commit ce7fef3d2f428493041b40e095e96a3fd1beb93a Author: Alan Garny Date: Sat Mar 24 16:19:00 2018 +1300 PMR Workspaces window: enable/disable unstaged/staged files in our synchronise dialog (#1582). commit f0ac46ed746b8e27dde3cabba26c47469d30fbff Author: Alan Garny Date: Fri Mar 23 12:15:37 2018 +1300 PMR Workspaces window: show our synchronisation dialog if we have staged files (#1582). commit 7ca77d3d6e8868f3bcbda9a7d33fec4fe51074f2 Author: Alan Garny Date: Fri Mar 23 12:14:28 2018 +1300 PMR Workspaces window: enable our Synchronise context menu if (only) some files have been staged (in a workspace we own; #1582). commit 19f1d61eaebabe6c5c980a1df0460faea4e7c3ba Author: Alan Garny Date: Fri Mar 23 12:11:03 2018 +1300 PMR Workspaces window: now show the iStatus or wStatus of a folder/file (#1582). commit 70763e8ecbbc9afb1d0cb5508494532de08404bd Author: Alan Garny Date: Fri Mar 23 12:08:26 2018 +1300 PMR Workspaces window: added our iStatus icons (#1582). commit d0ee9a785ac731be9be08a52a85a0eb63f8c90ca Author: Alan Garny Date: Fri Mar 23 10:49:33 2018 +1300 PMR Workspaces window: can now show the staged (in addition to unstaged) status of a workspace (#1582). commit 7ab495410bec8126bf2542120c265535169091d6 Author: Alan Garny Date: Fri Mar 23 09:59:34 2018 +1300 Some minor cleaning up. commit 706012df8aa265c9e216525aa481b2f1fc0ee6b0 Author: Alan Garny Date: Fri Mar 23 09:57:50 2018 +1300 Some minor cleaning up. commit 219d1ef9e85f2f969c54293f096f6a828779b631 Author: Alan Garny Date: Thu Mar 22 17:30:29 2018 +1300 Added a question mark iStatus icon (#1582). commit faea2093b1837512afb8032fbf49303a042c888e Author: Alan Garny Date: Thu Mar 22 17:08:51 2018 +1300 Readded our iStatus icons (#1582). commit a5522072f0c9152d8b433020e1de5c9ff20ae83a Author: Alan Garny Date: Thu Mar 22 16:50:12 2018 +1300 Some minor cleaning up. commit d282af0df792402a76833d53dec036b4f92f5602 Author: Alan Garny Date: Thu Mar 22 15:22:04 2018 +1300 PMR Workspaces window: slight improvement to the way we handle our synchronisation with PMR (#1582). commit f6c68c889a3399fcfd2dbb61f9f9d95742e96c3f Author: Alan Garny Date: Thu Mar 22 14:31:04 2018 +1300 Slight update to our downloads page (#1574). commit 2f3847890532d7faf83c618d2b5f9f2e61a8b4f2 Author: Alan Garny Date: Thu Mar 22 14:27:20 2018 +1300 Simulation Experiment view: fixed a problem with OpenCOR potentially crashing when reloading the view after a dependency file has been edited (#1574). commit 70f4815079087ac4279055b62141157d06213f3a Author: Alan Garny Date: Thu Mar 22 11:19:33 2018 +1300 Some minor cleaning up. commit ac4fae0e262a0f698ac1a36afe507384a078a8d6 Merge: 70f12a382 4d2796f9c Author: Alan Garny Date: Tue Mar 20 20:39:03 2018 +1300 Data store interface: fixed a problem with the returned size of a data store being wrong in some cases (closes #1579). commit 4d2796f9ca45c75399af50cde1807b0c3dba0b65 Author: Alan Garny Date: Tue Mar 20 19:10:20 2018 +1300 Slight update to our downloads page (#1579). commit cc6eb0e002cbcad190b4e3eda40daeeff705fbec Author: Alan Garny Date: Tue Mar 20 19:04:35 2018 +1300 Data store interface: make sure that our size is always accurate (#1579). Note: we don’t need to test mVoi anymore since it (now) always exists… commit 70f12a3823fa7c95c406f1c13e1f1cbd4acaa3eb Merge: 1edef40dd 5606f72fe Author: Alan Garny Date: Tue Mar 20 17:49:31 2018 +1300 Simulation Experiment view: prevent a model with no ODEs/DAEs from crashing OpenCOR (closes #1576). commit 5606f72feef3f9cc524a365bfdb43d237afd937e Author: Alan Garny Date: Tue Mar 20 17:13:54 2018 +1300 Slight update to our downloads page (#1576). commit 960ce63a3c2a1cad56c57fc2cbb8d616763b4ce3 Author: Alan Garny Date: Tue Mar 20 17:04:09 2018 +1300 Simulation Experiment view: prevent a model with no ODEs/DAEs from crashing OpenCOR (#1576). commit 1edef40dd0bb63f762bef3896f5b1424c2640892 Merge: 2d39554eb a3ba8584d Author: Alan Garny Date: Tue Mar 20 16:55:54 2018 +1300 libgit2: always link against our OpenSSL. commit a3ba8584dd99b308ef40329f85b4174cca02b592 Author: Alan Garny Date: Tue Mar 20 15:32:46 2018 +1300 Slight update. commit 2d39554eb73ec87c242294d856376dc4c303f54a Merge: 2da70a50a ce0cf70dd Author: Alan Garny Date: Tue Mar 20 15:23:18 2018 +1300 SED-ML support: fixed a problem with OpenCOR crashing when saving an empty SED-ML file (closes #1572). commit 3385f406d927a58a2b93d192140f4b66a05bb8ec Author: David Brooks Date: Tue Mar 20 15:08:47 2018 +1300 Update Linux libgit2 binaries (#1571). commit db51481b108ca2e8c8fe2e0bcec582574bec0b6e Author: David Brooks Date: Tue Mar 20 14:34:35 2018 +1300 Update macOS and Windows libgit2 binaries (#1571). commit ce0cf70ddccd36a963a77bede1112160f6088d51 Author: Alan Garny Date: Tue Mar 20 14:09:39 2018 +1300 Slight update to our downloads page (#1572). commit a1369977b0e4e4c4f262acfa8d3ca0cbade81241 Author: Alan Garny Date: Tue Mar 20 14:05:57 2018 +1300 Simulation Experiment view: only export our simulation to a SED-ML file if we are not dealing with a new SED-ML file (#1572). Otherwise, we just copy the contents of our new (temporary) file to the new file itself. commit 9513dc044422a427f07dfb295b78d4f5cd646097 Author: Alan Garny Date: Tue Mar 20 14:04:52 2018 +1300 Simulation Experiment view: make sure that we return a suitable default file extension. Indeed, our Simulation Experiment view supports both CellML and SED-ML files, so we must return a default file extension based on the type of the current file. commit aae2c0e14d9a95637b6044b6400a1037651d3980 Author: David Brooks Date: Tue Mar 20 13:04:30 2018 +1300 Use our OpenSSL for all platforms (#1571). commit 4a8e228b5965e60d8d3960953da495050e11fadb Author: Alan Garny Date: Tue Mar 20 13:10:01 2018 +1300 Simulation Experiment view: make it possible to save a new SED-ML file. The downside is that the SED-ML is invalid since it doesn’t contain everything it should. So, when it comes to saving a new SED-ML file using the Simulation Experiment view, we should just save our default SED-ML template, i.e. as if we were to save the SED-ML file using the Raw SED-ML or Raw Text view. commit ab7c0e0a220eb30a4c927580dad15848b9d6d8ef Author: Alan Garny Date: Tue Mar 20 11:14:17 2018 +1300 Simulation support: make sure that we have a runtime when checking whether some simulation data have changed (#1572). commit fd56efa29200fe719201242f8078d5e31a9392d7 Merge: 9e9a57f7e 2da70a50a Author: Alan Garny Date: Sat Mar 17 13:07:44 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 2da70a50a9549dba9b9c577fb6f1d0f265c7d274 Merge: 183335b11 b8f9e502b Author: Alan Garny Date: Sat Mar 17 13:06:46 2018 +1300 Some minor cleaning up. commit b8f9e502b29126a94b5a21fe6bfd92aef681da23 Author: Alan Garny Date: Sat Mar 17 12:27:47 2018 +1300 Some minor cleaning up. commit 9e9a57f7e3cbe195716776303939fb7ca4f5623d Merge: 15d085c34 183335b11 Author: Alan Garny Date: Sat Mar 17 12:00:48 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 183335b119d872112198cf5e7175e8a6b86b7d55 Merge: db6d64f58 43c4bade3 Author: Alan Garny Date: Sat Mar 17 11:36:50 2018 +1300 New snapshot. commit 43c4bade311dcd63cc9de98ed17c057c51f72aed Author: Alan Garny Date: Sat Mar 17 11:05:21 2018 +1300 New snapshot. commit db6d64f58d6d7eb845ab2e4cbbeaae287d9836fc Merge: 357dce2e9 becebeaa8 Author: Alan Garny Date: Sat Mar 17 11:03:34 2018 +1300 SED-ML support: now provide better error messages (closes #1556). commit becebeaa817780dfe00107410ca2af79ef552976 Author: Alan Garny Date: Sat Mar 17 10:27:15 2018 +1300 Slight update to our downloads page (#1556). commit 0cd03546106e5005d2f9e37c33401ceb22765a9f Author: Alan Garny Date: Sat Mar 17 10:25:04 2018 +1300 SED-ML support: provide better error messages (#1556). commit 15d085c34df53e6ad4bbdc4812bf2a77d031bb13 Merge: 962405ce6 357dce2e9 Author: Alan Garny Date: Fri Mar 16 18:18:09 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 357dce2e931f5526fe7d42a3a1d71216b385edf1 Merge: 623575b15 26604d169 Author: Alan Garny Date: Fri Mar 16 18:16:46 2018 +1300 PMR Workspaces window: improved the synchronisation with PMR in case the Internet connection drops (closes #1566). commit 26604d169de5d038ccb94e194176565dd724d2dd Author: Alan Garny Date: Fri Mar 16 16:27:40 2018 +1300 Slight update to our downloads page (#1566). commit 2ca9a8453bfe26d1f680aaebde44e1c946b0e763 Author: Alan Garny Date: Fri Mar 16 16:25:18 2018 +1300 PMR Workspace window: improved the synchronisation with PMR in case the Internet connection drops (#1566). commit 623575b154e159936f55d2ccd63f317570c58308 Merge: 7632e43ca 308e06697 Author: Alan Garny Date: Fri Mar 16 15:55:30 2018 +1300 PMR support: now provide a more meaningful error message when something goes wrong (closes #1558). commit 308e06697e9063be3471a32e7ee3a970b447be4d Author: Alan Garny Date: Fri Mar 16 15:20:20 2018 +1300 Slight update to our downloads page (#1558). commit 2231b6dada4b39fa981178b7dc8040795f697f3b Author: Alan Garny Date: Fri Mar 16 15:18:39 2018 +1300 PMR support: now provide the Git error message along our own one (#1558). commit 7632e43cacb0de1091e8e3814a068f51ebbf8281 Merge: d483165cc fe52c3357 Author: Alan Garny Date: Fri Mar 16 14:48:26 2018 +1300 PMR support: fixed a problem with folders being potentially wrongly tracked (closes #1559). commit fe52c33573cd44bf5a205a15809cc94384e144ba Author: Alan Garny Date: Fri Mar 16 14:14:49 2018 +1300 Slight update to our downloads page (#1559). commit a1b3840f065848c73e50a43c1c3bc12e3cdfecc4 Author: Alan Garny Date: Fri Mar 16 14:13:48 2018 +1300 Slight update to our downloads page (#1559). commit f6a7947c06e56ffc29d9cf6b8851a5a1d9fcb527 Author: Alan Garny Date: Fri Mar 16 14:10:50 2018 +1300 PMR support: fixed the algorithm that was supposed to retrieve the parent file node of a Git entry (#1559). commit 110834d513cea3faedcf580d10e046d57b40d66e Author: Alan Garny Date: Fri Mar 16 13:31:14 2018 +1300 PMR support: some minor cleaning up. commit 962405ce639492fa7393e6cc57a2a92b67554301 Merge: 3537688e1 d483165cc Author: Alan Garny Date: Fri Mar 16 11:14:30 2018 +1300 Merge branch '\''master'\'' into issue1544. commit d483165cc51ae5f596c6f412881a0a9653b0dd9c Merge: 08d80232c 540fe6b87 Author: Alan Garny Date: Fri Mar 16 11:13:33 2018 +1300 libgit2: upgraded to version 0.26.3 (closes #1557). commit 540fe6b87f91d6bfc4e11513e344ada74fa595ae Author: Alan Garny Date: Fri Mar 16 10:40:19 2018 +1300 Stop building libgit2 0.26.3 only (#1557). commit 431495fc24e529e8bba8d46c95b3e22638a73de8 Author: Alan Garny Date: Fri Mar 16 10:38:53 2018 +1300 libgit2: use our 0.26.3 binaries (#1557). commit 51bc744c4054ec83b35353aed1d7271c185977ce Author: Alan Garny Date: Fri Mar 16 10:32:11 2018 +1300 Build libgit2 0.26.3 only (#1557). We should have used the maint/v0.26 branch (after having updated it)! Indeed, it includes a special version of `git_clone()`, which we need for OpenCOR. commit 16432813bd43f166cb01a28d1d54b2db82e1f020 Author: Alan Garny Date: Fri Mar 16 10:20:44 2018 +1300 libgit2: change our call to `git_clone()`, which signature has changed (#1557). commit 090d52fed71da1821efab067746c4797ced247ff Author: Alan Garny Date: Fri Mar 16 09:54:35 2018 +1300 Slight update to our downloads page (#1557). commit 6db26cf9bfae68a6a7de9c7adc92df39eceaf681 Author: Alan Garny Date: Fri Mar 16 09:52:13 2018 +1300 Stop building libgit2 0.26.3 only (#1557). commit 9c5e6f94479990a6048b4275a063dc03ea96b253 Author: Alan Garny Date: Fri Mar 16 09:51:17 2018 +1300 libgit2: use our 0.26.3 binaries (#1557). commit 7b4df075e8cc593c99b2b279338598d7447e8c60 Author: Alan Garny Date: Fri Mar 16 09:42:47 2018 +1300 Build libgit2 0.26.3 only (#1557). commit 3537688e16daf5364f1b09b06e8fbf773d207855 Merge: 2e36de889 08d80232c Author: Alan Garny Date: Thu Mar 15 19:29:21 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 08d80232cab46104188f22378a3670e3e841cf1c Merge: 9745bda87 592f73cc1 Author: Alan Garny Date: Thu Mar 15 19:28:01 2018 +1300 Simulation Experiment view: fixed a small regression problem with nothing being shown when running a simulation and then asking for a graph to be plotted (closes #1560). commit 592f73cc102009ba54b9819ab762fe84688bd6de Author: Alan Garny Date: Thu Mar 15 18:42:32 2018 +1300 Slight update to our downloads pages (#1560). commit ba47c8d4b171e86780e464ae2c57ba39d5eff815 Author: Alan Garny Date: Thu Mar 15 18:38:02 2018 +1300 Simulation experiment view: add (and populate) the correct number of runs to a recently added graph if our simulation has some runs (#1560). commit 0cc9e80aafdaa4c8243b2147cf09834e5cbe4253 Author: Alan Garny Date: Thu Mar 15 17:58:33 2018 +1300 Simulation experiment view: add a run to a recently added graph if our simulation has some runs (#1560). commit ec772e312ded4af6231ae38878515958c581bd6e Author: Alan Garny Date: Thu Mar 15 17:57:51 2018 +1300 Some minor cleaning up. commit 2e36de8890ba3948d6d1ea646983e5f49cb71dd6 Author: Alan Garny Date: Thu Mar 15 15:41:38 2018 +1300 Editor widget: simplified things a bit with the icons of our find feature. commit 9487bbfdbfdc604d12092a3fbe9fe7690bfcc6b7 Merge: 82075eecf 9745bda87 Author: Alan Garny Date: Thu Mar 15 13:47:06 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 9745bda8791e42aaccb7df40b8ceba10c4c2a414 Author: Alan Garny Date: Thu Mar 15 13:45:15 2018 +1300 Added the 2018-02-01 changes to our previous snapshots page. commit 82075eecf1d55d4462b69452256efabcdb1a4e38 Author: Alan Garny Date: Thu Mar 15 13:33:22 2018 +1300 Editor widget: the clearing of our find/replace field can be done for us. commit a73d0a9a9d142d9caa5b886ad1828e2d07e13361 Author: Alan Garny Date: Thu Mar 15 11:10:05 2018 +1300 Upgraded our Oxygen icons to version 5.44.0. commit 8b573042d7d307bbb00795b5912b1f22cd8ac5c4 Author: Alan Garny Date: Wed Mar 14 15:53:07 2018 +1300 Updated our test SED-ML files. Since we moved them under [OpenCOR]/models/tests/sedml. commit 430f29750d782909c9fdb4ed6b89d2b903885138 Merge: 43df6af8e f3a5f50f1 Author: Alan Garny Date: Fri Mar 9 21:53:13 2018 +1300 Merge branch '\''master'\'' into issue1544. commit f3a5f50f14bb9b37387cbb44a1033d29c4334f9f Merge: 849d9b682 9177e5072 Author: Alan Garny Date: Fri Mar 9 21:51:06 2018 +1300 New snapshot. commit 9177e50720ce7eac15ddc4333900b0b483060a2b Author: Alan Garny Date: Fri Mar 9 18:40:06 2018 +1300 ZIP support: make sure that the extraction works on Windows. commit d4a5fa00fb947c0c7e952802c8c00d2b9ea9de82 Author: Alan Garny Date: Fri Mar 9 16:42:21 2018 +1300 New snapshot. commit 43df6af8ee82bcc9a86cd28b32c5e091b6f5b647 Merge: e6acd24ef 849d9b682 Author: Alan Garny Date: Fri Mar 9 16:39:40 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 849d9b68260a65e8930430d6c07a9e8e74d38e8b Merge: 29357b74e f4d322ea9 Author: Alan Garny Date: Fri Mar 9 16:38:41 2018 +1300 Fixed a problem that prevented, on Windows, a simulation from being exported to a COMBINE archive (closes #1553). commit f4d322ea922de6ed25a1b00be8e8fccf1594a061 Author: Alan Garny Date: Fri Mar 9 16:09:37 2018 +1300 Slight update to our downloads page (#1553). commit 1acee1f9b0cf8263619e3c74f0efaf1b54003b41 Author: Alan Garny Date: Fri Mar 9 04:05:34 2018 +0100 Replaced all our calls to nativeCanonicalXXX() with canonicalXXX(), and removed our nativeCanonicalXXX() methods. commit d7bb0147768e6a306c86d9c006d30de1cb399d36 Author: Alan Garny Date: Fri Mar 9 15:50:05 2018 +1300 Replaced all our calls to nativeCanonicalXXX() with canonicalXXX(), and removed our nativeCanonicalXXX() methods. commit 7184d6b77137cbb959db06b810e8d161cd18cd63 Author: Alan Garny Date: Fri Mar 9 15:17:59 2018 +1300 Replaced all our calls to nativeCanonicalXXX() with canonicalXXX(), and removed our nativeCanonicalXXX() methods. commit 7d7735903aae638231d5978d8c825e7c4eff89d7 Author: Alan Garny Date: Fri Mar 9 02:29:21 2018 +0100 Added some Core functions (canonicalDirName(), canonicalFileName() and canonicalFileNames()). commit a96d3b84f44d6cece67cd72b572672cbb0e5a197 Author: Alan Garny Date: Fri Mar 9 02:05:23 2018 +0100 Get our plugins to load properly, following commit 0305a4b. commit a140cea4f235a52ad553385e2fd13d2f3961a922 Author: Alan Garny Date: Fri Mar 9 02:01:55 2018 +0100 Some minor cleaning up. commit d02db7f5b175def047db4d65a01cb77f7a60ecb6 Author: Alan Garny Date: Fri Mar 9 01:20:43 2018 +0100 Some minor cleaning up. commit e6acd24ef718cb53b2f4d83e3e1416dabe27507f Author: Alan Garny Date: Fri Mar 9 11:57:13 2018 +1300 Some minor cleaning up. commit 99b4ea9d9dee7717b06260ae8d0575df833b2695 Author: Alan Garny Date: Fri Mar 9 11:53:53 2018 +1300 Some minor cleaning up. commit 0305a4b83a5a9e781091d03281b321145239564a Author: Alan Garny Date: Fri Mar 9 11:17:58 2018 +1300 Replaced all our occurrences of QDir::separator() with "/". Indeed, to use QDir::separator() can cause problems in cross-platform code (see http://agateau.com/2015/qdir-separator-considered-harmful/ for example). commit a51eae90ebf168412965cf524b98084f38d54751 Author: Alan Garny Date: Thu Mar 8 14:30:00 2018 +1300 Some minor cleaning up. commit 8b5a065fd3b31f041b03496f13ed478afee10bf0 Author: Alan Garny Date: Tue Mar 6 14:15:59 2018 +1300 Home page: added a link to our what is new and team pages (#1544). commit c9e52be091f63aad9e4ea8b9288cd9f093cbec8d Author: Alan Garny Date: Tue Mar 6 14:15:33 2018 +1300 Slight update to our team page (#1544). commit 2cbc49f4e96eb8421adbdb31f6be184895d60bfd Author: Alan Garny Date: Tue Mar 6 14:11:06 2018 +1300 Refer to our online version of the user and developer documentations (#1544). commit c2b665f867d444f945e489155a9b5fe57c081003 Merge: 3e39134ba 29357b74e Author: Alan Garny Date: Mon Mar 5 18:04:44 2018 +1300 Merge branch '\''master'\'' into issue1544. commit 29357b74e20cd29ec3bb35a42804d4d829c3761e Merge: a9022a3d0 e60684e00 Author: Alan Garny Date: Mon Mar 5 17:45:10 2018 +1300 QScintilla: upgraded to version 2.10.3 (closes #1548). commit e60684e0056c4d0ed7d4f555bc699585cf47c65d Author: Alan Garny Date: Mon Mar 5 17:11:26 2018 +1300 Stop building only the QScintilla package (#1548). commit 80602633503bb1c9dc55332f08db8e84f128cbb8 Author: Alan Garny Date: Mon Mar 5 17:09:57 2018 +1300 Slight update to our downloads page (#1548). commit 8f6bb88d2b7db7883ab3db242e41cd9bc5396946 Author: Alan Garny Date: Mon Mar 5 16:52:26 2018 +1300 Slight update to our third-party libraries page (#1548). commit 5b8a5d70ac0a34749a4085bac3fdae640ce28ec2 Author: Alan Garny Date: Mon Mar 5 16:52:02 2018 +1300 QScintilla package: updated our Windows, Linux and macOS binaries (#1548). commit 231852e2bd87512aaa2ce159833d6a0f857c71e6 Author: Alan Garny Date: Mon Mar 5 16:42:26 2018 +1300 Slight update to our QScintilla CMakeLists.txt file so that we can now build QScintilla 2.10.3 (#1466). commit dbcc4613532a559cc2ce1c96eacfa7054be62786 Author: Alan Garny Date: Mon Mar 5 14:03:12 2018 +1300 Some minor cleaning up. commit 80936a69cd00e83d7bdd7b2647919f85c91300b8 Author: Alan Garny Date: Mon Mar 5 11:55:52 2018 +1300 Only build the QScintilla package (#1548). commit 3e39134ba5839c9fca0a45ac6dc56aca188846f4 Merge: bd494c9c5 a9022a3d0 Author: Alan Garny Date: Fri Mar 2 21:46:58 2018 +1300 Merge branch '\''master'\'' into issue1544. commit a9022a3d0f89e4e262e3996841e58425dbbcfd2d Merge: 0c6f407d5 305d03ad7 Author: Alan Garny Date: Fri Mar 2 21:42:36 2018 +1300 Simulation support: a change in a model parameter now results in a solver being reinitialised (closes #1549). commit 305d03ad75957307031eabac56280f010f0c6bb0 Author: Alan Garny Date: Fri Mar 2 18:18:43 2018 +1300 Slight update to our downloads page (#1549). commit 66a77408e4847fa2de289a22f7326833dc9901c7 Author: Alan Garny Date: Fri Mar 2 16:28:16 2018 +1300 Simulation support: get a solver to reinitialise itself when one or several model parameters have been modified (#1549). commit 11d48a09bd7b6d1a1c83eb3ab4d925aab2535ecb Author: Alan Garny Date: Fri Mar 2 15:19:30 2018 +1300 Simulation support: reinitialise our solver, if needed, at the beginning of our forever loop. Not sure why it used to be at the end of our forever loop since it clearly ought to be at the beginning (to ensure that our call to OdeSolver::solve() is right). commit bd494c9c58b072123ac5a6e0ab246111611e1dbc Author: Alan Garny Date: Wed Feb 14 15:04:17 2018 +0100 Moved our original developer functional test files to [OpenCOR]/models/tests (#1544). It makes it easier to reference from our “new” developer documentation. commit 6895ec27c0191bfa3cdad1ea984063e97fee0b3f Author: Alan Garny Date: Tue Feb 13 14:39:25 2018 +0100 Removed Google Code Prettify, KaTeX and some Oxygen images (#1544). We don’t use those anymore in the documentation tracked in this Git repository. Note: we will have to see what our doc/OpenCOR.qhp file should really list once we are done with the user documentation… commit ffee9778ae985eae0af8ef165726c2d9a4431772 Merge: 0a27a3077 0c6f407d5 Author: Alan Garny Date: Tue Feb 13 14:00:55 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 0c6f407d5f94f9c32b9887fc552c88de80cbcb36 Merge: 38f16d9c3 ddb47b91e Author: Alan Garny Date: Tue Feb 13 13:58:17 2018 +0100 Some minor cleaning up. commit ddb47b91ecbeccd0d8a4295300eb74be1d1146c3 Author: Alan Garny Date: Tue Feb 13 13:24:03 2018 +0100 Have one sentence per line. This makes it easier to diff. commit 26ba1b85ba5c483db390b34f831e8ea263e3260c Author: Alan Garny Date: Tue Feb 13 13:18:25 2018 +0100 Use _ rather than __ for our reST links. commit 0a27a30770fd390c7fc25de5c247dfd012c7ec6e Author: Alan Garny Date: Mon Feb 12 16:57:43 2018 +0100 Used _ rather than __ for our reST links. commit 46cb981f52959ee9d4365180cc4b9ce0e55df167 Merge: 6df388a7a 38f16d9c3 Author: Alan Garny Date: Mon Feb 12 15:38:57 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 38f16d9c3b94f031ea9b1e4dbc611e264ef5ad42 Author: Alan Garny Date: Mon Feb 12 15:37:54 2018 +0100 Some minor cleaning up. commit 6df388a7a2e5e3ad94929518149a3ec9bb2bbf81 Merge: 27d7d9782 21aba2d6b Author: Alan Garny Date: Mon Feb 12 13:01:09 2018 +0100 Merge branch '\''master'\'' into issue1544. commit 21aba2d6bb542846b04ba97a5d5b9132d67533c1 Merge: a015be07e f8bc08443 Author: Alan Garny Date: Mon Feb 12 12:59:01 2018 +0100 CMake files: made sure that all our macros are now in lowercase form. commit f8bc08443d6b600711078375bd38a8ae7603643f Author: Alan Garny Date: Mon Feb 12 11:24:38 2018 +0100 CMake files: made sure that all our macros are now in lowercase form. commit 27d7d9782193928e8ca85cecb6fd58aa167708f9 Merge: 2988fcbb1 a015be07e Author: Alan Garny Date: Fri Feb 9 19:24:48 2018 +0100 Merge branch '\''master'\'' into issue1544. commit a015be07ea5fb02b1f56fc3e97d4c632be82b494 Merge: aea12c728 0176596cb Author: Alan Garny Date: Fri Feb 9 19:24:03 2018 +0100 Converted CMake-language commands and our CMake macros to lower case. commit 0176596cb8b87873e5b3bb019e54f04489b1f82f Author: Alan Garny Date: Fri Feb 9 18:52:34 2018 +0100 Converted our CMake macros to lower case. Ancient CMake versions required upper-case commands. Later command names became case-insensitive. Now the preferred style is lower-case. See https://github.com/Kitware/CMake/commit/77543bd. commit a558cd0211427a5e66b79709c629d0daa8e2f847 Author: Alan Garny Date: Fri Feb 9 18:39:51 2018 +0100 Converted CMake-language commands to lower case. Ancient CMake versions required upper-case commands. Later command names became case-insensitive. Now the preferred style is lower-case. See https://github.com/Kitware/CMake/commit/77543bd. commit 2988fcbb13029dcac32dd7ab3e753cec609fdba6 Author: Alan Garny Date: Wed Feb 7 17:18:38 2018 +0100 Cleaned up our [OpenCOR]/doc structure (#1544). commit e21b08a1d49b88013c469441762c0db4ef29e034 Author: Alan Garny Date: Wed Feb 7 14:10:36 2018 +0100 Some minor cleaning up. commit 99348c9f9a9a238ab51b79384f641a6154832294 Author: Alan Garny Date: Wed Feb 7 13:52:19 2018 +0100 Removed both our user and developer documentations (#1544). commit aea12c728266dbcddb185db523a1cab580965a4a Merge: 270c8b9a1 10a410772 Author: Alan Garny Date: Wed Feb 7 11:08:08 2018 +0100 Update the documentation in preparation for the OpenCOR 0.6 release (#1542). We merely update our master branch with changes that we started as part of issue #1542, but which are now going to be completed in issue #1544. commit 10a4107729a68f2c014d046a6cb2d2b3349fb348 Author: Alan Garny Date: Tue Feb 6 11:00:00 2018 +0100 Slight update to our coding style page (#1542). commit b51ee8beacc30c308950d433153cdccd08395cac Author: Alan Garny Date: Mon Feb 5 17:55:39 2018 +0100 Slight updates to our develop page (#1542). commit 59ad2ad75d1a81155f96cdc5c775d2fd6d83112e Author: Alan Garny Date: Mon Feb 5 17:25:28 2018 +0100 Slight updates to our file structure page (#1542). commit b161b56e36d3cb3ae4c3a90489ddfa21787664b7 Author: Alan Garny Date: Mon Feb 5 17:16:15 2018 +0100 Slight update to our prerequisites page (#1542). commit 13ac1a20c7ffc2d39765b7e4fece0eca68266906 Author: Alan Garny Date: Mon Feb 5 11:54:58 2018 +0100 Slight update to our downloads page (#1542). commit 712206f655737f2cfd3883c48a33eeb485e3fd84 Author: Alan Garny Date: Fri Feb 2 14:02:31 2018 +0100 Slight update to our third-party libraries page (#1542). commit 9adcaeebd5c40be438bae535d925060eb91535f4 Author: Alan Garny Date: Fri Feb 2 13:54:41 2018 +0100 Google code prettify: updated it to commit 05ad1b7 and customised it a bit (#1542). commit 270c8b9a11ed0e17818831b4ed4f9b308aba0ee4 Merge: ef036a0fa 741e7a985 Author: Alan Garny Date: Thu Feb 1 17:43:43 2018 +0100 New snapshot. commit 741e7a9850f0a476d8d2ead0bb1e6623b7970b0a Author: Alan Garny Date: Thu Feb 1 17:11:39 2018 +0100 New snapshot. commit ef036a0fa2e82bfba0884ce6a5dbebad83fa4564 Merge: 6015df254 bb82caa25 Author: Alan Garny Date: Thu Feb 1 17:09:26 2018 +0100 Simulation Experiment view: prevent the legend labels from disappearing upon clearing the simulation data (closes #1537). commit bb82caa25466c9cbaf5e401e03189cc71ec46442 Author: Alan Garny Date: Thu Feb 1 16:38:26 2018 +0100 Slight update to our downloads page (#1537). commit 3a2f2c7c00fc6b9848137da521ea001a34d38b16 Author: Alan Garny Date: Thu Feb 1 16:36:38 2018 +0100 Simulation Experiment view: prevent the legend labels from disappearing upon clearing the simulation data (#1537). commit 6015df2541eb7eb72fa625cbb543be94a3076179 Merge: 2b65c99a6 24c9e2acc Author: Alan Garny Date: Thu Feb 1 14:08:44 2018 +0100 Simulation Experiment view: prevent the clearing of simulation data from taking too long when we have several graph panels (closes #1538). commit 24c9e2acc890138fc29033347ffe3dac57f815bd Author: Alan Garny Date: Thu Feb 1 13:39:40 2018 +0100 Slight updates to our downloads pages (#1538). commit c9839a9cab1cf929ce62f5d36e06fc23003e5d08 Author: Alan Garny Date: Thu Feb 1 13:37:03 2018 +0100 Simulation Experiment view: prevent the clearing of simulation data from taking too long when we have several graph panels (#1538). commit 2b65c99a6df45d1f66e0b81979aa69eba7bbb0a6 Merge: b19a9a97f 6b03953c8 Author: Alan Garny Date: Wed Jan 31 18:15:07 2018 +0100 New snapshot. commit 6b03953c8082e81494e014be9c01b3bc3e09919b Author: Alan Garny Date: Wed Jan 31 17:41:14 2018 +0100 New snapshot. commit b19a9a97f564e46cc16921ef70723baf6cd32780 Merge: 7b70773ff 786586132 Author: Alan Garny Date: Wed Jan 31 17:38:38 2018 +0100 Simulation Experiment view: added support for multiple runs (closes #1523). commit 78658613229cad7539d2cc30fab4cae1c4771f66 Author: Alan Garny Date: Wed Jan 31 17:05:04 2018 +0100 Graph panel widget: no space between our legend items (#1523). Indeed, on macOS it was fine, but on Windows and Linux there was some space, which meant that after a few runs of doc/developer/functionalTests/res/sedml/noble_1962_local.sedml, we would see a scrollbar for the two bottom graph panels (since they have 3 graphs each while the first graph panel has only one). commit 4deb3e5b9590e72f228cd48f542afa4f8b04ea40 Author: Alan Garny Date: Wed Jan 31 17:04:48 2018 +0100 Some minor cleaning up. commit 84dc07b30df3d906481094d0a396a2d0bc327a86 Author: Alan Garny Date: Wed Jan 31 16:45:56 2018 +0100 Slight updates to our downloads and what is new pages (#1523). commit 0aa0e7e2ea8a0a4c93da97da18229469432edfb3 Author: Alan Garny Date: Wed Jan 31 16:00:34 2018 +0100 CSV data store: output the data of all the runs and not always that of the last run (#1523). commit 7789ec45612742b9b50241dcf0c4b28609717152 Author: Alan Garny Date: Wed Jan 31 15:58:44 2018 +0100 Some minor cleaning up. commit 63e87f630c065f0e633f4eb4aead2c97ceefc38e Author: Alan Garny Date: Wed Jan 31 14:52:58 2018 +0100 Some minor cleaning up. commit 468dd3c5c1d987198e0b8ead49980548d012cdd6 Author: Alan Garny Date: Wed Jan 31 14:27:49 2018 +0100 Some minor cleaning up. commit 870efed1b7ebb0f2bcee1cb4ce9f0f456a638574 Author: Alan Garny Date: Wed Jan 31 14:24:40 2018 +0100 Graph panel widget: show only one instance of a graph'\''s legend (#1523). Indeed, Qwt creates a legend widget for every single graph, which means that if we have three runs then we will have three legend widgets while we only want one of them. commit 0056d450e2ae4912fa6e37bad9ad30935d6303f5 Author: Alan Garny Date: Wed Jan 31 11:53:49 2018 +0100 Some minor cleaning up. commit 3f62ff9d1da5a04037f84ddc5d4c29ff97622df9 Author: Alan Garny Date: Wed Jan 31 11:52:28 2018 +0100 Graph panel widget: improved boundingRect() and boundingLogRect() methods (#1523). commit 6cbc3587fce44464f5eba878f682dd199383e52f Author: Alan Garny Date: Tue Jan 30 17:19:52 2018 +0100 Some minor cleaning up. commit 44cf95bb23e4ffa88d53371b04cb3bdd9af693af Author: Alan Garny Date: Tue Jan 30 17:04:25 2018 +0100 Graph panel widget: make sure that our new default run (upon resetting our runs) is properly customised (#1523). commit 47cddceddf8758dc842fc1838f8a4b14546b7dd8 Author: Alan Garny Date: Tue Jan 30 16:32:28 2018 +0100 Graph panel widget: make sure that a run has some data before using it to compute our bounding rectangle (#1523). commit 0cecf4b407c4e5ed8fb01002c0938e6ccfccf275 Author: Alan Garny Date: Tue Jan 30 16:31:26 2018 +0100 Some minor cleaning up. commit 1f37dd91eca59a7cccb0d53f59b8e3d3c02a4fce Author: Alan Garny Date: Tue Jan 30 15:53:32 2018 +0100 Simulation support: make sure that our results have a data store before returning its size (#1523). commit 136c98f668b06a837d836583a04a8859c31dc6a1 Author: Alan Garny Date: Tue Jan 30 15:42:48 2018 +0100 Simulation support: don'\''t try to create a data store for our results if we don'\''t have a runtime (#1523). commit b0e14ab873ece46c64ec3874002d82ef6ca0784f Author: Alan Garny Date: Tue Jan 30 15:14:06 2018 +0100 Some minor cleaning up. commit eba2e2a55056c8d0ca519b396af06e383f9d47c3 Merge: 3c67d02a9 7b70773ff Author: Alan Garny Date: Tue Jan 30 11:48:16 2018 +0100 Merge branch '\''master'\'' into issue1523. commit 7b70773ffa3e98fa2a9dbe3c2b814b19d2ed47ab Merge: 80da4af2d 632cfe967 Author: Alan Garny Date: Tue Jan 30 11:47:15 2018 +0100 Simulation support: addressed a problem with fixing and then saving a previously invalid simulation (closes #1533). commit 632cfe96701caad2dd645365c01ed154f39947f8 Author: Alan Garny Date: Tue Jan 30 11:08:34 2018 +0100 Travis CI: re-disabling macOS builds. Well, the reason it is going much better is that they are now only accepting one macOS job at a time! Now, because we need both release and debug builds, it means that it takes twice as long to build as it used to, which is not ideal. So, re-disabling macOS builds… :( commit fdcb2369d45d76aba985c70bdd42fb9f574d2c37 Author: Alan Garny Date: Tue Jan 30 10:59:48 2018 +0100 Travis CI: re-enabling macOS builds. It seems to be going much better, so… commit 2ff1981cdb2b24ed5bb1e5218f5973ccfbc9282c Author: Alan Garny Date: Tue Jan 30 10:46:10 2018 +0100 Slight update to our downloads page (#1533). commit 5ffd943aee991e16814c9d55e81b3359b4ef46a8 Author: Alan Garny Date: Tue Jan 30 10:44:28 2018 +0100 Simulation support: addressed a problem with fixing and then saving a previously invalid simulation (#1533). commit 3c67d02a9d352d94a225a5788fc476a27b15f4ae Author: Alan Garny Date: Mon Jan 29 19:55:44 2018 +0100 Graph panel widget: use the same symbols for different runs (#1523). commit 8498a1e30bfc593f39b222dc30127ca19f46f313 Author: Alan Garny Date: Mon Jan 29 18:49:38 2018 +0100 Simulation Experiment view: to clear our simulation data now reset all our runs, not only the last one (#1523). commit 94e529576ae721a80545a17791a384ff6f08839d Author: Alan Garny Date: Mon Jan 29 18:46:31 2018 +0100 Graph panel widget: our runs are freed automatically, so no need to free them ourselves (#1523). Not only that, but it also prevents potential problems for trying to free them twice! commit 16696563052db86e4d40daeaac6aed1943dcb4fd Author: Alan Garny Date: Mon Jan 29 17:23:50 2018 +0100 Simulation Experiment view: added initial support for multiple runs (#1523). There are still some strange things going on (e.g. to clear the simulation data doesn’t remove the plots…!?). commit 7c015fb5a998dca3688a4e6e62b4aa20c0954fc8 Author: Alan Garny Date: Mon Jan 29 16:40:13 2018 +0100 Graph panel widget: added support for multiple runs (#1523). Now, we ‘just’ need to make use of multiple runs from the SimulationExperiment view. commit fb259f61ffe601b77c0a44ae44a6b1b55ee22174 Author: Alan Garny Date: Mon Jan 29 11:50:18 2018 +0100 Some minor cleaning up. commit 3192b70eb3daf90b9869fef56ef5e4b62b57f9b7 Author: Alan Garny Date: Mon Jan 29 11:42:58 2018 +0100 Some minor cleaning up. commit 5b9ce9dd0256d8bd75ca96e64d5d919416296c58 Author: Alan Garny Date: Mon Jan 29 11:39:40 2018 +0100 BioSignalML data store: improved the progress of the export. commit b5729b4748026c461d2e21d5658c83af7bda9656 Author: Alan Garny Date: Mon Jan 29 11:26:22 2018 +0100 CSV data store: improved the progress of the export. commit bc8fbbc715d9c6af3e34b5cf94cce6011d035ec0 Merge: 990d7d78e 80da4af2d Author: Alan Garny Date: Sat Jan 27 22:15:46 2018 +0100 Merge branch '\''master'\'' into issue1523. commit 80da4af2d16226342ffb8c35456f6f4ffe41b4b1 Merge: 0f3cfcda5 6125537d6 Author: Alan Garny Date: Sat Jan 27 21:57:48 2018 +0100 Some minor cleaning up and improvement. commit 6125537d62c3ffbc564df4c693b68135901db675 Author: Alan Garny Date: Sat Jan 27 20:33:31 2018 +0100 Replaced qulonglong with quint64. Mainly to be consistent with our use (and that of Qt) of qint64. commit d9c95bc716354a02ef6070257a67fe69d4d78cea Author: Alan Garny Date: Sat Jan 27 19:59:25 2018 +0100 Some minor cleaning up. commit 5381fe04ef09adc1e261cf5c34ecaa7ecef71e2a Author: Alan Garny Date: Sat Jan 27 19:58:51 2018 +0100 Slight improvement to our StandardFile class. commit 7bf0a6dec56152210de045e5f23ad17f85938a42 Author: Alan Garny Date: Sat Jan 27 19:57:59 2018 +0100 Some minor cleaning up. commit c88e3df172060fbc8406fc26c72c92249373e3b1 Author: Alan Garny Date: Sat Jan 27 19:42:25 2018 +0100 Some minor cleaning up. commit 2324f76d1c87082551ee186cb1d5f702b8fc5bef Author: Alan Garny Date: Sat Jan 27 19:38:48 2018 +0100 Make sure that all our signals make use of the OpenCOR namespace. This is mainly for consistency. commit 8409263853e656a10475af8fa140b742f6e8f708 Author: Alan Garny Date: Sat Jan 27 00:44:49 2018 +0100 Make sure that StandardFileManager::manage() really checks that the file is not already managed. We removed the test in a recent commit, but that was clearly a mistake since doIsFile() will return true if the file is already managed! commit 990d7d78e9102a6950889a0ed23827755ebc3d94 Merge: 7f6873667 0f3cfcda5 Author: Alan Garny Date: Fri Jan 26 18:51:39 2018 +0100 Merge branch '\''master'\'' into issue1523. commit 0f3cfcda5b38f99619cf38b4d241ba1d73305f0c Merge: 67e1b9c53 81733e1c3 Author: Alan Garny Date: Fri Jan 26 18:48:22 2018 +0100 General: a new file (with no specific type) is not wrongly considered to be a COMBINE archive anymore (closes #1530). commit 81733e1c32a5b57a60a07f983e03c88e16fe277c Author: Alan Garny Date: Fri Jan 26 18:12:05 2018 +0100 Slight update to our downloads page (#1530). commit ee5524f7828456242ab2b2f7974e4130c5645384 Author: Alan Garny Date: Fri Jan 26 18:10:20 2018 +0100 General: a new file (with no specific type) is not wrongly considered to be a COMBINE archive anymore (#1530). commit 4bf0cbde106948494fabb23c81a47414252ea710 Author: Alan Garny Date: Fri Jan 26 17:24:21 2018 +0100 Some minor cleaning up. commit 169409ca162d3e9d9e3c2aa21da1bf76bacf8ae7 Author: Alan Garny Date: Fri Jan 26 17:10:50 2018 +0100 General: make sure that reloading a file involves checking that a file is indeed of the correct type (#1530). commit 4553cf7b150b92b44d4e931bc76fc794237aa086 Author: Alan Garny Date: Fri Jan 26 17:02:13 2018 +0100 General: make sure that reloading a file involves checking that a file is indeed of the correct type (#1530). commit 628282b41357e98243323665c970f91bd2052852 Author: Alan Garny Date: Fri Jan 26 16:41:34 2018 +0100 Some minor cleaning up. commit 7f6873667e61d743a4440848e1f003f2661da536 Author: Alan Garny Date: Thu Jan 25 17:17:33 2018 +0100 Simulation Experiment view: simplified our code a bit. commit 7a2189467f9ac80461ed11bbcbeb0af36d8727ff Author: Alan Garny Date: Thu Jan 25 15:23:21 2018 +0100 Some minor cleaning up. commit 6b9cdfbd782cd55711ad2c593c6c350d52ba5772 Author: Alan Garny Date: Thu Jan 25 15:16:08 2018 +0100 Some minor cleaning up. commit 99ea191e4b6ca5035bbcbca13e0be70540011361 Merge: f6cd94f13 67e1b9c53 Author: Alan Garny Date: Thu Jan 25 14:57:35 2018 +0100 Merge branch '\''master'\'' into issue1523. commit 67e1b9c53e9db227d7302faec797853ed64d63bb Merge: 5b17af28f fbcc120d1 Author: Alan Garny Date: Thu Jan 25 14:54:31 2018 +0100 SED-ML support: now support simulations with a great number of points (closes #1528). commit f6cd94f132b5908f727f8a8283e95ca0e287c58e Author: Alan Garny Date: Thu Jan 25 14:53:40 2018 +0100 BioSignalML data store: now support multiple runs (#1523). Note that we don’t set the duration of our recording anymore since it may contain more than one run. commit a7b7c82f71f57bcb3de75fc543e924aac4244e2d Author: Alan Garny Date: Thu Jan 25 11:35:43 2018 +0100 BioSignalML data store: can now re-export the last run (#1523). commit 40ff6b50831d2453d48a0f46d93508c2a3f3fb44 Author: Alan Garny Date: Thu Jan 25 11:26:51 2018 +0100 CSV data store: now support multiple runs (#1523). commit f9c9da57bc9f1b5532132eabe4de64344175600f Author: Alan Garny Date: Thu Jan 25 11:18:01 2018 +0100 Some minor cleaning up. commit 258666208132199ab08d0ca7bd43a3196dd663e8 Author: Alan Garny Date: Thu Jan 25 10:57:12 2018 +0100 Some minor cleaning up. commit 6fd46be5e5d0328cfda52376a40af64b0046ca02 Author: Alan Garny Date: Thu Jan 25 10:49:03 2018 +0100 Data store interface: some minor renaming (#1523). commit 90ad0261854d2f34ec72abb88fb1a1f4b8c7f005 Author: Alan Garny Date: Thu Jan 25 10:41:01 2018 +0100 Data store interface: keep track of our data store in our DataStoreData class (#1523). commit 4bca0e591b86ba799c399c2586660d3d710d92a3 Author: Alan Garny Date: Thu Jan 25 10:07:27 2018 +0100 Some minor cleaning up. commit fbcc120d109623cb519fa960cfd2a27147235c59 Author: Alan Garny Date: Thu Jan 25 09:59:15 2018 +0100 SED-ML support: allow simulations to have a great number of points (#1528). commit a07199531f752ae698bb0b6a8a5f1c8aaf73ec09 Author: Alan Garny Date: Thu Jan 25 09:53:47 2018 +0100 Some minor cleaning up. commit 5bc31933421312cea2e06f88f3338e7fcf2eb74d Author: Alan Garny Date: Wed Jan 24 18:31:46 2018 +0100 Data store interface: can now add and retrieve values (#1523). commit 9e6922f40a211b1fbe7a5ee22a16269654c8df0d Author: Alan Garny Date: Wed Jan 24 18:00:32 2018 +0100 Data store interface: can now only add a variables / some variables to a data store if no runs haven'\''t already been added to it (#1523). commit c66e0a4cdb92b264d14aadaef15b363f715ae984 Author: Alan Garny Date: Wed Jan 24 17:51:38 2018 +0100 Some minor cleaning up. commit ea8d6b0cd23050a91bb5daf84707811b726ab723 Author: Alan Garny Date: Wed Jan 24 17:47:37 2018 +0100 Data store interface: can now return the size of a given run (#1523). commit fe81f7f99868b22896629fd4171d705b80d4fae8 Author: Alan Garny Date: Wed Jan 24 17:26:22 2018 +0100 Data store interface: added an addRun() method to our DataStoreVariable class (#1523). commit a53e949df4abc775b4c06fb68b6820f1294430fc Author: Alan Garny Date: Wed Jan 24 17:12:03 2018 +0100 Removed our resetList() method. Only CellmlFile::reset() was really taking advantage of it. commit 72350af5d7d14d61dd7e719e4955743c60a1fdb6 Author: Alan Garny Date: Wed Jan 24 17:09:45 2018 +0100 Some minor cleaning up. commit 3bb7fd5ca43d6c0d7c6c56e94d23f98c5713f0ea Author: Alan Garny Date: Wed Jan 24 16:54:00 2018 +0100 Some minor cleaning up. commit 924e65fbbac095e8593b7fea346b42d5d31d72a2 Author: Alan Garny Date: Wed Jan 24 15:40:43 2018 +0100 Data store interface: added the skeleton of an addRun() method to our DataStore class (#1523). commit 431097afa7fe98ebf6d47698cabe7f4c7bb5dfb9 Author: Alan Garny Date: Wed Jan 24 15:24:50 2018 +0100 Data store interface: slight change to the signature of our DataStore::addVariables() method (#1523). commit 7ef9b8c5507788d7f86dc195f2f527cd7d430e0c Author: Alan Garny Date: Wed Jan 24 15:23:36 2018 +0100 Some minor cleaning up. commit f4c1ebf1771d2e1f585bec8e4a2bae5d73fa7a5c Author: Alan Garny Date: Wed Jan 24 15:13:33 2018 +0100 Data store interface: removed DataStores (#1523). commit 8c0ee4943740e022e6c80ca6e58d47d38319bec2 Author: Alan Garny Date: Wed Jan 24 14:33:59 2018 +0100 Data store interface: don'\''t pass all our data stores to DataStoreData (#1523). commit b33e1b1e4dd51a770ae204ae886a9247586f3722 Author: Alan Garny Date: Wed Jan 24 14:04:25 2018 +0100 Data store interface: don'\''t create a data store with a capacity anymore (#1523). Indeed, we want a data store to hold one or several runs, and those runs may not all be of the same capacity (e.g. one run with a point interval of 1 and another of 0.1, for the same starting and ending points). commit fa2fafb20c5197d5af3289fc13cdac499370ced0 Author: Alan Garny Date: Wed Jan 24 13:04:40 2018 +0100 Some minor refactoring (#1523). commit 923443b9a38159a42405ae7b24599aed9ddeebac Author: Alan Garny Date: Wed Jan 24 10:14:18 2018 +0100 Some minor cleaning up. commit 91a2a707f5e227021c2e18d1677cf650e594374b Author: Alan Garny Date: Tue Jan 23 17:12:02 2018 +0100 Data store: always have a VOI (#1523). commit 16421927e5c70c167dd2d3114c6165d03d293645 Merge: 5b951d430 5b17af28f Author: Alan Garny Date: Tue Jan 23 15:48:28 2018 +0100 Merge branch '\''master'\'' into issue1523. commit 5b17af28f0863e46c16e2bbc79ce895f184d9fbd Merge: d64a46ff1 72446696a Author: Alan Garny Date: Tue Jan 23 15:42:49 2018 +0100 Qt: upgraded to Qt 5.9.4 LTS (closes #1526). commit 72446696a5896d20e7721892d2a3056757452eaf Author: Alan Garny Date: Tue Jan 23 15:06:01 2018 +0100 Developer documentation: got our labels to follow the new Git colouring system. commit c4699628c11f948a4be3ba8c3aff635f225e010c Author: Alan Garny Date: Tue Jan 23 14:52:16 2018 +0100 Some minor cleaning up. commit d2819ef9547741283fdf50fe1b98f23c93b60db3 Author: Alan Garny Date: Tue Jan 23 14:51:37 2018 +0100 Some minor cleaning up. commit 4e67488eeb1784b2dd556a56af05ecd26f889c4c Author: Alan Garny Date: Tue Jan 23 14:47:20 2018 +0100 Developer documentation: got our "Feature" label to follow the new Git colouring system. commit 44f6b0503a1e384737b5ae837599ebb3d3b901b0 Author: Alan Garny Date: Tue Jan 23 14:16:17 2018 +0100 Slight upgrade to our downloads page (#1526). commit 8534769aa82115aa1eb8f6e11c8cb43421e77aee Author: Alan Garny Date: Tue Jan 23 14:15:00 2018 +0100 Slight update to our prerequisites page (#1526). commit 5b951d43098d0f52280bad80c5f94f15676dfda6 Author: Alan Garny Date: Mon Jan 22 18:08:06 2018 +0100 CSV data store: support multiple data stores (#1523). Make sure that it builds fine on Windows. commit 9ef1ff07ecc89292bed0a53fb2dfc5cbc530b645 Author: Alan Garny Date: Mon Jan 22 18:06:50 2018 +0100 CSV data store: support multiple data stores (#1523). Makes sure that we can output different runs with different point intervals, this without outputting the VOI. commit 39cf439de1508fd8d2a6bf17ba0e42c1fc44364a Author: Alan Garny Date: Mon Jan 22 17:58:25 2018 +0100 CSV data store: support multiple data stores (#1523). Makes sure that we can output different runs with different point intervals, this without outputting the VOI. commit 54b63474d8dea17988f40cafe4a576d5d058665f Author: Alan Garny Date: Mon Jan 22 17:46:07 2018 +0100 CSV data store: support multiple data stores (#1523). commit 32c6c4538d8c32fdbf91d1450aa9f2578bc4202b Author: Alan Garny Date: Mon Jan 22 14:24:24 2018 +0100 Some minor cleaning up. commit 9b2fe288717fecb78103b534644da99320ad492d Author: Alan Garny Date: Mon Jan 22 14:03:20 2018 +0100 Some minor cleaning up. commit 93bdd93a1385372717627215fd92b61ee46654ae Merge: fa481aaa2 d64a46ff1 Author: Alan Garny Date: Mon Jan 22 11:48:48 2018 +0100 Merge branch '\''master'\'' into issue1523. commit d64a46ff1b03ec0f0e0ad97f3e0bbd1f8119aa9c Merge: e1d4374c8 0eb7ea94b Author: Alan Garny Date: Mon Jan 22 11:47:42 2018 +0100 jQuery: upgraded to version 3.3.1 (closes #1524). commit 0eb7ea94bf341177a6fd11018520a00b8ee7a785 Author: Alan Garny Date: Mon Jan 22 11:16:30 2018 +0100 Slight update to our third-party libraries page (#1524). commit a198ca09e97eae1e5bdb30f37d8cd2fdf444e9e4 Author: Alan Garny Date: Mon Jan 22 11:15:37 2018 +0100 jQuery: upgraded to version 3.3.1 (#1524). commit 373d535c34ab6c4b2a8596a50176d5905572257f Author: Alan Garny Date: Mon Jan 22 11:13:35 2018 +0100 Some minor cleaning up. commit fa481aaa2991a59abb9aef97cd0d21768df304f8 Author: Alan Garny Date: Mon Jan 22 11:11:40 2018 +0100 Some minor cleaning up. commit be6e59d8a4a8c44af1383691feb82bffbe7601e0 Author: Alan Garny Date: Mon Jan 22 11:07:37 2018 +0100 Some minor cleaning up. commit c3b23db8f833db4826413c148ae6f5dcf624af52 Author: Alan Garny Date: Mon Jan 22 11:00:46 2018 +0100 Some minor cleaning up. commit c3a2592c1210c8b1b879b017a506646eee2e50e1 Author: Alan Garny Date: Sat Jan 20 11:46:07 2018 +0100 Simplified our data store interface (#1523). commit 7c94b2b88f19904e95612d6b44a16bd23996f29e Author: Alan Garny Date: Fri Jan 19 13:31:28 2018 +0100 Some minor cleaning up. commit ea009ed53334321aba404b6839d1ae7752daf0b1 Author: Alan Garny Date: Fri Jan 19 10:45:27 2018 +0100 Simulation support: give access to all our data stores (#1523). commit 73f4a0d91579852c8cc63ce5cf7e6fa1251896af Author: Alan Garny Date: Fri Jan 19 10:44:40 2018 +0100 Some minor cleaning up. commit da85fda94aa3272bf5cb2d0d64cb91c4bb50246b Author: Alan Garny Date: Fri Jan 19 10:39:00 2018 +0100 Some minor cleaning up. commit a4e197cb3465a66ffe61ecd9f3353fc52711c033 Author: Alan Garny Date: Fri Jan 19 10:36:24 2018 +0100 Some minor cleaning up. commit ae54b463a82fb00e984d843d8d1eeaa6b29f75ed Author: Alan Garny Date: Fri Jan 19 10:28:42 2018 +0100 Some minor cleaning up. commit c1846e03e74a28987e45f667a354a702529c5df1 Author: Alan Garny Date: Mon Jan 15 16:50:09 2018 +0100 Revert "Some minor cleaning up." This reverts commit 012ee5d4c09ce475d41120646187806dfdb7934f. commit 012ee5d4c09ce475d41120646187806dfdb7934f Author: Alan Garny Date: Mon Jan 15 15:41:08 2018 +0100 Some minor cleaning up. commit edc590f5ad1cddbd125594c8be9bed4135196822 Author: Alan Garny Date: Mon Jan 15 14:54:41 2018 +0100 Simulation support: can now add a new run (#1523). commit ffa46750fa8d5c08f177f7e504218d40c2850953 Author: Alan Garny Date: Mon Jan 15 13:40:18 2018 +0100 Simulation support: added an addRun() method to our Simulation class (#1523). This is just about refactoring code at this stage… commit e1d4374c87a3682ed8a7e4aed1337d19941cd338 Merge: 7ac99e445 d6eef4fb9 Author: Alan Garny Date: Mon Jan 15 11:16:39 2018 +0100 PMR window: properly refresh the list of public exposures when changing the PMR instance (closes #1521). commit d6eef4fb9aead810d5a345f1f6b6faee8612ba36 Author: Alan Garny Date: Mon Jan 15 10:42:26 2018 +0100 Slight update to our downloads pages (#1521). commit 2ba057c4c94f6753936fd058c8d553f69dc9b917 Author: Alan Garny Date: Mon Jan 15 10:38:33 2018 +0100 PMR window: properly refresh the list of public exposures when changing the PMR instance (#1521). commit 7ac99e44502d1a92fbf741df776791198725faae Merge: 352da1458 305ccd623 Author: Alan Garny Date: Fri Jan 12 19:14:21 2018 +0100 New snapshot. commit 305ccd6239cbc75dc2973bf82b83a93a31c3ec78 Author: Alan Garny Date: Fri Jan 12 18:42:27 2018 +0100 New snapshot. commit 62b0f5c1ee9d0ea0df99e3800fde393d32f8f97b Author: Alan Garny Date: Fri Jan 12 18:37:53 2018 +0100 KINSOL solver: prevent the solver from looping indefinitely when an ODE solver is badly set up. commit f87f7a579386afc3daf94221d875a3e364d569bd Author: Alan Garny Date: Fri Jan 12 17:36:12 2018 +0100 Simulation support: simplified our detection of modified simulation data. A state/rate that is not a finite number necessarily has a value that is different from its initial value. commit e5ea50fba6a5e9c9b9be08d41187c741f9b3cb26 Author: Alan Garny Date: Fri Jan 12 17:05:01 2018 +0100 Simulation Experiment view: improved the property type of our simulation properties. commit af5e819b948eaa444d48aa93f2560c62f60d5a70 Author: Alan Garny Date: Fri Jan 12 16:45:38 2018 +0100 Some minor cleaning up. commit 9cc356ee46f8fbb15f0b07d415bcf167bbf022a0 Author: Alan Garny Date: Fri Jan 12 16:37:10 2018 +0100 Solvers: rely on our new types of properties to set a solver'\''s properties. commit 1e1f61451ecd3ce7513a31109db0607fffbd0fc1 Author: Alan Garny Date: Fri Jan 12 16:00:23 2018 +0100 Property editor: don'\''t allow the value of a DoubleGt0 property to be empty. commit 6edb99230709f4a43e48e9fac978ba5e05f6226a Author: Alan Garny Date: Fri Jan 12 15:48:10 2018 +0100 Solver interface: allow for a solver property to be an integer/double greater or equal to zero. The idea is to match what is supported by our property editor. commit af0b87c7b81113e4b570376d7cf83b0b13ac62e9 Author: Alan Garny Date: Fri Jan 12 15:43:36 2018 +0100 Property editor: added support for properties for integers/doubles that are greater or equal to zero. commit 65ab8919266d1dd4412075c6b713b8411573a58f Author: Alan Garny Date: Fri Jan 12 15:28:39 2018 +0100 Property editor: fixed an issue with adding a DoubleGt0 property. commit a7cf1ca9b712f555da6ef948d2989a62385ab4c2 Author: Alan Garny Date: Fri Jan 12 15:27:54 2018 +0100 Property editor: fixed an issue with our integer validator. commit de829f12eb90207e677c20b319ab2e6c140dbc7e Author: Alan Garny Date: Fri Jan 12 14:48:35 2018 +0100 Some minor cleaning up. commit c441acd0adbcd2e6eb7c62e4147cd52f08efda21 Author: Alan Garny Date: Fri Jan 12 14:34:00 2018 +0100 Solver interface: allow for a solver property to be an integer/double greater than zero. The idea is to match what is supported by our property editor. commit b09835bda30b621a80b35699565743c6e327d07f Author: Alan Garny Date: Fri Jan 12 13:57:29 2018 +0100 Simulation support: only forward the first solver error we get. commit 8827ac789a3e4ecb75c6c2c8510fffd9a63407bb Author: Alan Garny Date: Fri Jan 12 10:14:39 2018 +0100 Simulation support: slight improvement to the way we handle elapsed time in our simulation worker. commit 1b14a83ec422db27e9daf0662ce5dbbb3b9b2321 Author: Alan Garny Date: Fri Jan 12 09:30:25 2018 +0100 Simulation support: improved the main work loop of our simulation worker. commit 352da145870f13e7e682362d721cfcc98b6f0260 Merge: 76cd7736b 3dfb15a20 Author: Alan Garny Date: Thu Jan 11 20:44:40 2018 +0100 Some minor cleaning up and improvement. commit 3dfb15a202809147888e198c0016d9e2531b19fb Author: Alan Garny Date: Thu Jan 11 19:34:54 2018 +0100 Simulation solver: slight improvement to our simulation worker. commit 54954f718672563c3471de56a5067ae6d4926320 Author: Alan Garny Date: Thu Jan 11 19:28:55 2018 +0100 Simulation support: use OdeSolver::reinitialize() rather than OdeSolver::initialize() (#1515). To use OdeSolver::initialize() works fine, but it'\''s unnecessary and may result in some memory leaks (e.g. with CVODES). commit 76cd7736b47de73ea1ad5a82506ecacc8ee0d033 Merge: b6c4d8267 d53178442 Author: Alan Garny Date: Thu Jan 11 18:14:19 2018 +0100 Removed the IDAS solver (closes #1515). commit d531784422805eddc03d6e448199ec3ed873dc7e Author: Alan Garny Date: Thu Jan 11 17:36:54 2018 +0100 Slight update to our downloads page (#1515). commit 716f191f1b196c8b8ce07f5276a6cfd4c12f139e Author: Alan Garny Date: Thu Jan 11 17:32:59 2018 +0100 Solver interface: added a reinitialize() method (#1515). Makes things cleaner for CVODES when we need to reinitialise it (when solving a DAE model; see SimulationWorker::started()). commit 0cb02d698d78471cb388ed496a3bfe15e7f3b59a Author: Alan Garny Date: Thu Jan 11 17:11:56 2018 +0100 CellML support: don'\''t keep track of the type of model (#1515). Indeed, if it is a DAE model, it will have some NLA equations to solve. commit cd6848509a9c9f7984071e8d1044f4cb5cd0ac9f Author: Alan Garny Date: Thu Jan 11 16:48:45 2018 +0100 CellML support: got rid of all the DAE-related code (#1515). commit 8b4beeee3e1bae22d6f25700cc3beaf0cade88f5 Author: Alan Garny Date: Thu Jan 11 16:25:59 2018 +0100 Solver interface: removed the DAE type of solver (#1515). commit e580447b160d11b10e382bfe421b76f1a7e724ce Author: Alan Garny Date: Thu Jan 11 15:50:27 2018 +0100 Solver interface: removed the VoiSolver and DaeSolver classes (#1515). The contents of the VoiSolver class was merged into the OdeSolver class. commit 71ba6c521a013f6174da491e479f2e4996f4e1f4 Author: Alan Garny Date: Thu Jan 11 15:30:42 2018 +0100 Documentation: slight updates related to DAE models (#1515). commit 486fa00847c0bce114aa931b551cfbb90518cc92 Author: Alan Garny Date: Thu Jan 11 15:10:14 2018 +0100 Documentation: updated our KINSOL solver page (#1515). commit ae162f0aad53197bed3a696ad205c814dfb42424 Author: Alan Garny Date: Thu Jan 11 15:08:23 2018 +0100 Updated the documentation to remove references to IDA(S) (#1515). commit 59fbd43963fecc7ffd4d93d89c48c9be51edfc8f Author: Alan Garny Date: Thu Jan 11 14:51:08 2018 +0100 Some minor cleaning up. commit 499f88ea41bc6206e110a8ba27b789f352d24bd4 Author: Alan Garny Date: Thu Jan 11 14:47:34 2018 +0100 Removed the IDAS solver (#1515). commit b6c4d826780d3ec8a2f64f1bd6e7f5624a720b47 Merge: ddc54a04b 260048cf4 Author: Alan Garny Date: Thu Jan 11 14:14:40 2018 +0100 KINSOL solver: don'\''t reset the solver on consecutive runs and improved its implementation (closes #1512). commit 260048cf4a6ae2f100dcc4cd2eb5c7c89c1c0909 Author: Alan Garny Date: Thu Jan 11 13:43:45 2018 +0100 Make sure that it compiles on Linux and macOS. commit 6671ae4613eb255f48827dd1cf80c1ca90fadd2c Author: Alan Garny Date: Thu Jan 11 13:39:51 2018 +0100 Make sure that it compiles on Windows. commit 647d9040b71418880f4d974e76607f0f2372e458 Author: Alan Garny Date: Thu Jan 11 13:00:53 2018 +0100 Slight update to our downloads page (#1512). commit 84f5e6817020f4cc0c17358792a4e400d2547a62 Author: Alan Garny Date: Thu Jan 11 11:52:35 2018 +0100 Slight update to our Smith et al. test COMBINE archive. Provide a more stable solution by asking CVODES not to interpolate its solution. commit 80b33939b4423f25db9dbe0f6e70aa9c6a33a46b Author: Alan Garny Date: Thu Jan 11 11:51:07 2018 +0100 Simulation support: make sure that our solver is reinitialised, if needed, before using it (#1512). commit 44292c1a5484c5144561483abf26e719666f658f Author: Alan Garny Date: Thu Jan 11 10:35:08 2018 +0100 Central widget: get the mode and view tabs to work fine again. This was due to our work on issue #1481. commit 8345a5c07bb3fc19aed87725abf9569268edfeb7 Author: Alan Garny Date: Thu Jan 11 10:33:52 2018 +0100 Some minor cleaning up. commit e8a50e163939f0145194c9a2839391478edf9859 Author: Alan Garny Date: Thu Jan 11 10:30:02 2018 +0100 Some minor cleaning up. commit e20ef25b4dec73e9c2faec1a5b3ac0f3f3c47d4a Author: Alan Garny Date: Wed Jan 10 15:28:28 2018 +0100 KINSOL solver: some refactoring to make things (much) faster (#1512). We had forgotten to update our user data! commit 72da11bb0101eec069f18b74a1c1db65716042e0 Merge: 1cd0d906f ddc54a04b Author: Alan Garny Date: Wed Jan 10 11:04:28 2018 +0100 Merge branch '\''master'\'' into issue1512. commit ddc54a04b91c1c72e0409fa1c2716c329ec37950 Merge: e4d5e549e a32795a94 Author: Alan Garny Date: Wed Jan 10 11:00:55 2018 +0100 Simulation Experiment view: don’t incorrectly mark a CellML file as modified (closes #1513). commit a32795a94a653ec394df2f9a6a9b9f0022f983c6 Author: Alan Garny Date: Wed Jan 10 10:26:04 2018 +0100 Slight update to our downloads page (#1513). commit 14840c6ca0753b82c995f8d842f94b962bd0bc08 Author: Alan Garny Date: Wed Jan 10 10:23:53 2018 +0100 Simulation Experiment view: don’t incorrectly mark a CellML file as modified (#1513). commit 1cd0d906faa0467ac5b4fef7896bf7a3a8fa6979 Author: Alan Garny Date: Tue Jan 9 19:15:10 2018 +0100 Some minor cleaning up. commit 517a2a4364364c6fc7e3b12165d34bb760830fda Author: Alan Garny Date: Tue Jan 9 17:20:20 2018 +0100 KINSOL solver: some refactoring to make things (much) faster (#1512). commit afd1c6cac5d41e02293fb6017811205f0de3b9f9 Author: Alan Garny Date: Tue Jan 9 16:17:04 2018 +0100 Some minor cleaning up. commit d3cfee74114a5f392efbaeca7c284b6dcf159e4a Author: Alan Garny Date: Tue Jan 9 10:45:39 2018 +0100 NLA solvers: don'\''t have an initialize() method anymore, only a solve() one (#1512). commit 96e148259f4b9cbfb521b057535882e566ac7ad6 Author: Alan Garny Date: Mon Jan 8 18:51:23 2018 +0100 Some minor cleaning up. commit 1c7005e06283f23a109fa9129799d796a65ab221 Author: Alan Garny Date: Mon Jan 8 17:48:24 2018 +0100 KINSOL solver: don'\''t reset things on consecutive runs (#1512). commit 326fed9015046e5f2d3c5946bdb5434469140367 Author: Alan Garny Date: Mon Jan 8 17:33:28 2018 +0100 Slight updates to some of our test COMBINE archives. In issue #1510, we made it possible to customise the KINSOL solver, but forgot to update some of our test COMBINE archives. commit e4d5e549e44ee3991c3623e2fa8a61b92a2fb390 Merge: 883c2c456 61bba930c Author: Alan Garny Date: Mon Jan 8 17:20:11 2018 +0100 KINSOL solver: can now be parameterised (closes #1510). commit 61bba930c32e2081bdbda07f6bb53a1e7119c662 Author: Alan Garny Date: Mon Jan 8 16:48:12 2018 +0100 KINSOL solver: added French translations (#1510). commit 3c03a9292ec8837f1c80b3dde2e08828b1a23f9c Author: Alan Garny Date: Mon Jan 8 16:35:13 2018 +0100 Slight updates to our downloads and what is new pages (#1510). commit 1329405594695224b0b394d9cddb9867f1952a15 Author: Alan Garny Date: Mon Jan 8 16:34:48 2018 +0100 Some minor cleaning up. commit df3f62a51b7703a2b22fb7e16022f79009b85dee Author: Alan Garny Date: Mon Jan 8 16:21:48 2018 +0100 Simulation Experiment view: can now specify different linear solvers for KINSOL (#1510). commit f145c4d8524139c0dfbcdd6e902536a5d99d1718 Author: Alan Garny Date: Mon Jan 8 15:58:34 2018 +0100 Some minor cleaning up. commit 82f4e4c7df5fb6b24e8c5b4c74072f9852226ede Author: Alan Garny Date: Mon Jan 8 15:54:30 2018 +0100 Simulation Experiment view: can now specify different linear solvers for KINSOL (#1510). commit 4d13fd458c5d4e8e0aa5693e06ef08114b49b317 Author: Alan Garny Date: Mon Jan 8 14:51:37 2018 +0100 Some minor cleaning up. commit 741de23dfb9d70fa3b895c3d60a5a8041ddc28f3 Author: Alan Garny Date: Mon Jan 8 14:51:07 2018 +0100 Some minor cleaning up. commit b2829598d01d9941d6aa4189c0327b859867c708 Author: Alan Garny Date: Mon Jan 8 14:18:48 2018 +0100 Simulation Experiment view: make sure that NLA solver properties are properly read from a SED-ML file / COMBINE archive (#1510). commit 39a0b47db83952e170df52c39184beda814a596b Author: Alan Garny Date: Mon Jan 8 10:50:51 2018 +0100 Simulation Experiment view: make sure that we properly export an NLA solver'\''s properties to SED-ML (#1510). commit 74b8f4b2f979e133b0e1137f7e37e06a3114bf99 Author: Alan Garny Date: Sat Jan 6 20:57:54 2018 +0100 Some minor cleaning up. commit 05c6f29ceb19d0d09257a950420ca5bfad78a712 Author: Alan Garny Date: Sat Jan 6 20:19:22 2018 +0100 KINSOL solver: make sure that commit 6c1e5a4 can compile fine. commit 3c394b40c92bb30d3fadec2c09b9c62f8bd19168 Author: Alan Garny Date: Sat Jan 6 19:04:34 2018 +0100 Some minor cleaning up. commit 6c1e5a4d4bf11cedab68d5811cf4bab32f83ab1e Author: Alan Garny Date: Sat Jan 6 18:32:08 2018 +0100 KINSOL solver: added Q_OBJECT to our KinsolSolver class (#1510). commit 266a7e3018df140ba69b8725588031ce10277060 Merge: 7e17fd6f6 d28f27d26 Author: Alan Garny Date: Sat Jan 6 18:24:30 2018 +0100 Merge branch '\''master'\'' into issue1510. commit d28f27d26358fc22fb60b411e9c0b01de822436c Merge: 13c9f5ec6 883c2c456 Author: Alan Garny Date: Sat Jan 6 18:23:44 2018 +0100 Merge remote-tracking branch '\''opencor/master'\''. commit 883c2c456e7989317586bc580fe035c41eca6075 Author: Alan Garny Date: Sat Jan 6 18:13:51 2018 +0100 Core plugin: fixed a small problem with checkFileNameOrUrl() on Windows. commit 7e17fd6f658ee8e3e52de8e82def44a8ef8f7c5e Author: Alan Garny Date: Sat Jan 6 00:17:17 2018 +0100 CellML support: renamed one of our test CellML files. commit 4fa42b528cd3dd122fadd1c94d2f43103bbb5b92 Author: Alan Garny Date: Fri Jan 5 23:58:09 2018 +0100 Solvers: use double quotes rather than single quotes in property error messages. commit 13c9f5ec677e71aa58c4a7b41e26374345ae3074 Author: Alan Garny Date: Fri Jan 5 23:16:09 2018 +0100 KINSOL solver: added the "Maximum number of iterations" property (#1510). commit 596c7a0394cb39eaa7117bf0613c5c4a398a4703 Author: Alan Garny Date: Fri Jan 5 23:08:27 2018 +0100 Simulation class: make sure that we only update a solver'\'' name when actually needed (#1510). Indeed, when it comes to our NLA solver, to update its name may result in our NLA solver being reset, which then causes problems when it comes to its properties (none can be found anymore). commit 96fc4fa6541295f8e9c2f19dfb21e69c53fc8fc4 Author: Alan Garny Date: Fri Jan 5 20:04:39 2018 +0100 Some minor cleaning up. commit 51a8de2ab82e3ed4f560158dbd7a70ffc066022c Author: Alan Garny Date: Fri Jan 5 18:07:50 2018 +0100 Some minor cleaning up. commit 661c98b4ddd711374da835f71b7cd1b6555e097e Author: Alan Garny Date: Fri Jan 5 17:38:11 2018 +0100 KINSOL solver: settings things up for customisation (#1510). commit 1ce99e6f7373c29cd94ff643a2bd2c341e26a5df Merge: 503920fdd eddad2ff3 Author: Alan Garny Date: Fri Jan 5 16:48:28 2018 +0100 Improved support for DAE models (closes #188 and closes #536). commit eddad2ff3cd081514952c10b4ad710e35e0643c9 Author: Alan Garny Date: Fri Jan 5 15:53:15 2018 +0100 Slight updates to downloads and what is new pages (#188 and #536). commit d13158dd160d09b21cfd1aec8a0e9f828a68235e Author: Alan Garny Date: Fri Jan 5 15:34:24 2018 +0100 Prevent OpenCOR from crashing when a SED-ML file or COMBINE archive requires a solver that is not present. commit 6978e0f6260dafdefe93f75246c5fae6976a4b9f Author: Alan Garny Date: Fri Jan 5 15:01:53 2018 +0100 Slight update to our known limitations page (#188 and #536). commit 498553d0f5f6a69b73d53ea711dbfff8126b5218 Author: Alan Garny Date: Fri Jan 5 14:44:50 2018 +0100 Simulation Experiment view: don'\''t reset our NLA solver when further running a simulation (#188 and #536). commit 5c5066f26ace98a373dfd39ddaa69e600cb28d86 Author: Alan Garny Date: Fri Jan 5 13:35:49 2018 +0100 Added a couple of COMBINE archives that can be used to test DAE models (#188 and #536). commit c45a847980959c5a500b314afe31782076ca779e Author: Alan Garny Date: Fri Jan 5 12:58:40 2018 +0100 Simulation Experiment view: make sure that, from a SED-ML file, we can open a CellML file which path contains spaces. commit 6604b265d1d061d9f79dab9101ab7e645613ed9d Author: Alan Garny Date: Fri Jan 5 10:22:27 2018 +0100 Revert "KINSOL solver: make sure that all our values are finite (#188 and #536)." This reverts commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5. commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5 Author: Alan Garny Date: Fri Jan 5 09:46:01 2018 +0100 KINSOL solver: make sure that all our values are finite (#188 and #536). commit 809e6abcf549bdbbff0500871cab014a318c652e Author: Alan Garny Date: Fri Jan 5 08:40:21 2018 +0100 Reordered the properties of our KinsolSolverUserData class. commit e060ffcdd6dcb7f2a9d359b78092d3192b902f88 Author: Alan Garny Date: Thu Jan 4 17:42:56 2018 +0100 Some minor renaming. commit abbeed50f02619bd08f35ad73a82ce63373aea1c Author: Alan Garny Date: Thu Jan 4 16:27:33 2018 +0100 Some minor cleaning up. commit bfd10c4517fd29351234bf138d79bfc4ba41d2c2 Author: Alan Garny Date: Thu Jan 4 16:09:28 2018 +0100 Simulation support: slight improvements to our SimulationData class. commit 0a2272d6b18836da04c72c865216a8d3fb774068 Author: Alan Garny Date: Thu Jan 4 15:50:24 2018 +0100 Slight renaming of some test CellML files. Also removed a CellML file that is not relevant anymore (since it’s not actually an under constrained DAE model). commit 432967b9383a1d7869cd92973d05f6945369a28d Author: Alan Garny Date: Thu Jan 4 15:09:37 2018 +0100 CellML support: slight improvement to our computeVariables() method. commit e699699bfd1b96082490b8cdb7935b5470c8955b Author: Alan Garny Date: Thu Jan 4 15:06:18 2018 +0100 Some minor cleaning up. commit 327c14e524c585aeeec13995f19fca665a058294 Author: Alan Garny Date: Thu Jan 4 14:39:19 2018 +0100 DAE models: consider them as ODE models that have one or several NLA systems to be solved (#188 and #536). commit 9d6e944e60f4f61ab1d682cc5e07e3743db7a103 Author: Alan Garny Date: Thu Jan 4 14:24:58 2018 +0100 Some minor cleaning up. commit d08db66e82f1262b4a6c1068a5384d3fe6cdf812 Author: Alan Garny Date: Wed Jan 3 16:21:38 2018 +0100 CellML support: make sure that our computeComputedConstants() method can always be compiled. Indeed, we couldn’t compile [OpenCOR]/doc/developer/functionalTests/res/cellml/parabola_variant_dae_ model.cellml anymore. Now, all our functional and model files that should be compilable are now so. commit fcacb8b8c342fd9c5cfbe485b8ce4ba53e2c9dad Author: Alan Garny Date: Wed Jan 3 14:35:09 2018 +0100 Some minor cleaning up. commit 8b87628a8b99b82b8ac4fe3f48d98f2e9f110a3c Author: Alan Garny Date: Wed Jan 3 13:35:16 2018 +0100 Solver interface: don'\''t have our methods return an int anymore. Not quite sure why we ever did return an int in the first place. Probably to mimic what the CellML API. Yet, there is no actual need for it, not to mention that it results in code that is executed for nothing. commit f310edcef7a9d8e1666aad6d38692d111159b94e Author: Alan Garny Date: Wed Jan 3 10:57:50 2018 +0100 Some minor cleaning up. commit 503920fddad7d5f64c6ff45d54d436938d967665 Author: Alan Garny Date: Mon Jan 1 16:52:37 2018 +0100 Some minor cleaning up. commit 2020fc20df2119ad9ab8fdac70a175200c02032f Merge: e30a5d263 7b2d941ff Author: Alan Garny Date: Mon Jan 1 14:20:42 2018 +0100 SUNDIALS: upgraded to version 3.1.0 (closes #1507). commit 7b2d941ffd1f5714c6695090a9c40fbcbc7de2ee Author: Alan Garny Date: Mon Jan 1 13:32:51 2018 +0100 Slight updates to our downloads pages (#1507). commit 17d3f2142e2776bf5adeba9c50a32de6a9dd0f29 Author: Alan Garny Date: Mon Jan 1 13:32:08 2018 +0100 Don'\''t build our SUNDIALS package anymore (#1507). commit 94c2b85eed8e4b457e1e10d36f871ce602b9ef50 Author: Alan Garny Date: Mon Jan 1 13:31:10 2018 +0100 SUNDIALS: generated 3.1.0 binaries for Windows, Linux and macOS (#1507). commit fd144d90ac681996f561ffd7cb12f7056b81f995 Author: Alan Garny Date: Mon Jan 1 13:14:22 2018 +0100 SUNDIALS: upgrade to version 3.1.0 (#1507). commit 4057a1bec7269b960fff849b5c02590990da7c14 Author: Alan Garny Date: Mon Jan 1 13:01:26 2018 +0100 Build our SUNDIALS package (#1507). commit e30a5d263ffba05cc94027ace26a0e5bc120ae49 Merge: 8be6e7b68 481dc375e Author: Alan Garny Date: Fri Dec 29 11:04:23 2017 +0100 Some minor cleaning up. commit 481dc375e014097d2db780210fa3207c7a6613ce Author: Alan Garny Date: Fri Dec 29 10:11:10 2017 +0100 Some minor cleaning up. commit 8be6e7b68aef0fe18c09e46cc857166cfb08f139 Author: Alan Garny Date: Tue Dec 26 10:15:06 2017 +0100 Slight update to our third-party libraries page. commit 6b14cae4637033d816c4ddaca62181091aae98a3 Merge: 397127090 93b69f4e2 Author: Alan Garny Date: Sat Dec 23 22:14:09 2017 +0100 New snapshot. commit 93b69f4e2fef3661263050fc1db9c4746d967625 Author: Alan Garny Date: Sat Dec 23 21:19:52 2017 +0100 New snapshot. commit 397127090e0cfaec7cfd7dbfacc97ed1a2bf12af Merge: aea7428d8 5d954d4b6 Author: Alan Garny Date: Sat Dec 23 21:14:21 2017 +0100 Some cleaning up, fixes and improvements. commit 5d954d4b68ab665b9da77d4c6fb0df87c10b806a Author: Alan Garny Date: Sat Dec 23 20:37:41 2017 +0100 COMBINE archive: make sure that we can save / save as. commit f63e0ed763e1aed8df6dd211695d4d803e80032a Author: Alan Garny Date: Sat Dec 23 20:32:16 2017 +0100 COMBINE archive: make sure that we can update. commit 4c940057a811348caa63f10f4eb41d8df155f82c Author: Alan Garny Date: Sat Dec 23 20:27:32 2017 +0100 Some minor cleaning up. commit 7f7409e5857acf0168272c93e9c4c5f97936b192 Author: Alan Garny Date: Sat Dec 23 18:42:23 2017 +0100 COMBINE archive: allow for it to be updated. commit 3ac9cdebfcf7ce5eb9d138129daeec176552dc33 Author: Alan Garny Date: Sat Dec 23 18:39:27 2017 +0100 Some minor cleaning up. commit 9b77aff023d6f1f863d3246b1afc0f1e53ec8c49 Author: Alan Garny Date: Sat Dec 23 18:26:33 2017 +0100 COMBINE archive: don'\''t consider ourselves as new once saved. commit e39098d7c7bca307be904b2f8747215fd6385d67 Author: Alan Garny Date: Sat Dec 23 17:07:22 2017 +0100 Some minor cleaning up. commit 358aab015db6110a3a11b694806605d5fad3befa Author: Alan Garny Date: Sat Dec 23 16:33:04 2017 +0100 Added some functional tests. commit e4a85033cd020dd94d28819a26a09809d279e998 Author: Alan Garny Date: Sat Dec 23 16:32:43 2017 +0100 Some minor cleaning up. commit 9e2a745d344d678ce8b57f20f194f85fee51ed4f Author: Alan Garny Date: Sat Dec 23 15:24:06 2017 +0100 Some minor cleaning up. commit 4150fd8ca048a4f0b201bef5d6c02cba715a3b5b Author: Alan Garny Date: Sat Dec 23 15:17:13 2017 +0100 Added some functional tests. commit 6307d63ad364486f66bf45ce1cce9e8bebda84fa Author: Alan Garny Date: Sat Dec 23 13:14:56 2017 +0100 CellML Annotation view: use CellmlFile::update() to save a CellML file. Indeed since we are only updating an existing CellML file… and this prevent a crash when adding and then removing an annotation. commit aea7428d8977aefa53f63cd36d8c1969d091a5f3 Merge: 5d05a8317 dcebc9335 Author: Alan Garny Date: Sat Dec 23 11:31:18 2017 +0100 LLVM+Clang: upgraded to version 5.0.1 (closes #1502). commit dcebc93353386e7c75627442b5e6ede8f3c85381 Merge: fe4f5e876 5d05a8317 Author: Alan Garny Date: Sat Dec 23 10:52:13 2017 +0100 Merge branch '\''master'\'' into issue1502. commit fe4f5e876601d9f64e87175371e2022ec7b82b51 Author: Alan Garny Date: Sat Dec 23 10:43:54 2017 +0100 Don’t build our LLVM+Clang package anymore (#1502). commit 5e7c87ae75d0c85a5df9d4079c6419c6e3bfede2 Author: Alan Garny Date: Sat Dec 23 10:42:12 2017 +0100 LLVM+Clang package: generated 5.0.1 binaries for Windows, Linux and macOS (#1502). commit 8b3d249daf761689e4a1fcbfd3cf8f2c10275b21 Author: Alan Garny Date: Fri Dec 22 22:54:33 2017 +0100 Slight update to our downloads page (#1502). commit 5d05a831787830d424abc61a9096a58911eb9e16 Author: Alan Garny Date: Fri Dec 22 22:37:21 2017 +0100 LLVM+Clang package: update our binaries on Windows, Linux and macOS. commit ce16f25e23f7c2aedf66c56b40ecb74588fabf9a Author: Alan Garny Date: Fri Dec 22 15:25:37 2017 +0100 LLVM+Clang: upgraded to version 5.0.1 (#1502). commit ffbfb02987644223e587919c052b7701cf2ddbca Author: Alan Garny Date: Fri Dec 22 11:19:38 2017 +0100 Getting ready to build our LLVM+Clang package (#1502). commit e2b282e7d8d168246770b42343427e2d8ee78934 Merge: 958243515 c1770c831 Author: Alan Garny Date: Thu Dec 21 20:19:39 2017 +0100 Simulation Experiment view: now allow the editing and saving of a SED-ML file / COMBINE archive (closes #1366). commit c1770c83111e0b9253f4683406b75523d9056eb3 Author: Alan Garny Date: Thu Dec 21 19:43:33 2017 +0100 Slight update to our downloads page (#1366). commit 7a528b84cff13f2dab025506776c7497cd0ca645 Author: Alan Garny Date: Thu Dec 21 19:38:32 2017 +0100 Some minor cleaning up. commit defa4a949d07fb019da0bed6d960b708e4b73d07 Author: Alan Garny Date: Thu Dec 21 19:07:53 2017 +0100 Simulation Experiment view: can now “save” / “save as…” a local COMBINE archive (#1366). commit 97636730f72dbfd5d732a77576b7beee3f84c13a Author: Alan Garny Date: Thu Dec 21 17:52:23 2017 +0100 Simulation Experiment view: some work on saving / saving as a local COMBINE archive (#1366). commit a56fd21cc6e9a18ac8b4265816746b1f4d05111d Author: Alan Garny Date: Thu Dec 21 16:58:28 2017 +0100 Simulation Experiment view: fixed a small problem with our creation of a SED-ML file. commit 537d1b3257253bf6e5c2521016e441ec71691cd0 Author: Alan Garny Date: Thu Dec 21 16:13:01 2017 +0100 Simulation Experiment view: fixed a small problem with our creation of a SED-ML file. commit dd2eada082c391173f3d92105e988041087cf5ec Author: Alan Garny Date: Thu Dec 21 15:54:31 2017 +0100 Some minor cleaning up. commit 3ebc0b1c04682232c83a01184fbd5217d6da7e50 Author: Alan Garny Date: Thu Dec 21 15:42:55 2017 +0100 Some minor cleaning up. commit 53b76e5f9b4a98eed9143941b54d9d65728a5075 Author: Alan Garny Date: Thu Dec 21 14:46:47 2017 +0100 Some minor cleaning up. commit 0266e3d335657c7ae19b82292a67a45d60dcbfdc Merge: 68af9d46c 958243515 Author: Alan Garny Date: Thu Dec 21 13:47:33 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 95824351569100dc36c08e2d384eb619bfa2ed0b Merge: 65a3e6233 bf12b637f Author: Alan Garny Date: Thu Dec 21 13:44:32 2017 +0100 libSBML: upgraded to version 5.16.0 (closes #1494). commit bf12b637f6552490c8d2ebbb132f032e709f47cb Author: Alan Garny Date: Thu Dec 21 13:09:05 2017 +0100 libSBML: updated our test (#1494). commit bb49d50571440b7b30d855704b4287b8f654811c Author: Alan Garny Date: Thu Dec 21 11:50:44 2017 +0100 Slight update to our downloads page (#1494). commit 1e13e3bbedb828c5cff0734af97d3c4e06af06dd Author: Alan Garny Date: Thu Dec 21 11:49:58 2017 +0100 Don'\''t build our libSBML package anymore (#1494). commit aa0d5aede129c4b8f88463aca0fe0c94a4e26f83 Author: Alan Garny Date: Thu Dec 21 11:49:28 2017 +0100 libSBML: generated new binaries for Windows, Linux and macOS (#1494). commit 6de913c3156cdd582513c24a667d9e32afb2c587 Author: Alan Garny Date: Thu Dec 21 11:16:10 2017 +0100 libSBML: upgraded to version 5.16.0 (#1494). commit 5c0cbe8b9738d0607e627e1ab52c1033f57b030b Author: Alan Garny Date: Thu Dec 21 10:57:58 2017 +0100 Slight update to our third-party libraries page (#1494). commit 6eef9b3a11f07757484c061b3138e588bf2a629a Author: Alan Garny Date: Thu Dec 21 10:57:31 2017 +0100 Getting ready to build our libSBML package (#1494). commit 65a3e62330ff32f8bda31c2afe1126c9305650ff Merge: 73be8cb86 107f7c66e Author: Alan Garny Date: Thu Dec 21 10:55:10 2017 +0100 Now pass make[test].bat arguments to scripts/genericmake.bat (closes #1498). commit 107f7c66ee5733cc2dab24a9be41926d9e98014e Author: Alan Garny Date: Thu Dec 21 10:20:24 2017 +0100 Pass make[test].bat arguments to scripts/genericmake.bat (#1498). Obviously the behaviour of `shift` is different on Windows and Linux/macOS…! commit faae7419c44023a395799c3a3f879eb997f470fd Author: Alan Garny Date: Thu Dec 21 10:03:39 2017 +0100 Some minor cleaning up. commit fa2cc5a8e8b34075df8aeb55a0a437f0b42358d4 Author: Alan Garny Date: Thu Dec 21 09:49:29 2017 +0100 Slight update to our downloads page (#1498). commit 61d9823bf3f3d7932bdb8595e2d22ebd9c441b99 Author: Alan Garny Date: Thu Dec 21 09:48:28 2017 +0100 Slight update to our downloads page (#1498). commit 02af6c1908b3c3d030255c792bdd652a5913b9e4 Author: Alan Garny Date: Thu Dec 21 09:46:17 2017 +0100 Pass make[test].bat arguments to scripts/genericmake.bat (#1498). commit 68af9d46cdbca7d397db6e0f9a89aa5a60f2feff Author: Alan Garny Date: Wed Dec 20 18:56:51 2017 +0100 Simulation Experiment view: can now export a local or remote SED-ML file to a COMBINE archive (#1366). commit 1108e5a4ff22e0b0510b43df6b512acd49fb1464 Author: Alan Garny Date: Wed Dec 20 18:10:45 2017 +0100 Some minor cleaning up. commit ead118201f47820cfd9f9345974d739667d69363 Author: Alan Garny Date: Wed Dec 20 18:07:54 2017 +0100 Some minor cleaning up. commit 1caa2e8b8504c8cfb1b09fac079c4f262548d18e Author: Alan Garny Date: Wed Dec 20 17:07:27 2017 +0100 Simulation Experiment view: improved the creation of a SED-ML file (#1366). Indeed, before, if we were to export a modified SED-ML file to a COMBINE archive (i.e. we would have a ‘*’ in the file tab text), then the ‘*’ would temporarily disappear. commit 5d4cc4bc11e927bcfc89722f3982fcbc8623e3a3 Author: Alan Garny Date: Wed Dec 20 16:15:56 2017 +0100 Simulation Experiment view: can now save/save as a SED-ML file that references a local or remote CellML file (#1366). commit fc81274b8699103ab0f68ceaaeea58e3949f6c3d Merge: fc5f63d45 73be8cb86 Author: Alan Garny Date: Wed Dec 20 14:58:07 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 73be8cb869d7cfbc4bb88bee5e9434604c90901f Merge: f038353b9 6581aa18f Author: Alan Garny Date: Wed Dec 20 14:57:00 2017 +0100 Some minor cleaning up. commit 6581aa18f13f182a6c40b50d61f567fc4d34949d Author: Alan Garny Date: Wed Dec 20 14:16:04 2017 +0100 Some minor cleaning up. Forgot to clean that up when working on issue #1491...! commit fc5f63d45127181a38de09f573471d4db3cc3bd6 Merge: e5fbafe9d f038353b9 Author: Alan Garny Date: Wed Dec 20 13:21:40 2017 +0100 Merge branch '\''master'\'' into issue1366. commit f038353b92f905cc68479d9aa1575f1ca08cef67 Merge: 8d8b659c9 a8f314d1d Author: Alan Garny Date: Wed Dec 20 13:10:38 2017 +0100 General: reworked our approach to the saving/reloading of a file (closes #1491). commit a8f314d1d89816b623bf8552fc3e98764dbca8dc Author: Alan Garny Date: Wed Dec 20 12:40:04 2017 +0100 Slight update to our downloads page (#1491). commit 4cff8737496147c9e1bb7dc188cc3e3c5c1933f1 Author: Alan Garny Date: Wed Dec 20 11:51:16 2017 +0100 Central widget: finally prevented our GUI from flashing when switching views. commit 508599982cc819c066847a3ca167a1a1d6763f6e Author: Alan Garny Date: Wed Dec 20 11:37:19 2017 +0100 Central widget: finally prevented our GUI from flashing when switching views. commit 86978ff1fde75e161d329d260314ed7d20bfa0e9 Author: Alan Garny Date: Wed Dec 20 10:27:05 2017 +0100 Simulation Experiment view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 2cae60b35cac6d42698f22eb498704d3828e1db7 Author: Alan Garny Date: Wed Dec 20 09:40:40 2017 +0100 File classes: refactored a few things that were in our CellmlFile class but not in our SedmlFile or CombineArchiveFile classes. commit d5cfe3f2d4a0b9d5f04c445d1aee5ad0ed68248e Merge: 8966aeef8 8d8b659c9 Author: Alan Garny Date: Tue Dec 19 19:29:05 2017 +0100 Merge branch '\''master'\'' into issue1491. commit e5fbafe9d0cf14b4e8a85d6cb5b40aff32217b00 Merge: 494e43de3 8d8b659c9 Author: Alan Garny Date: Tue Dec 19 19:28:40 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 8d8b659c99bc823f7a44a882faddaceb9cbc51f2 Author: Alan Garny Date: Tue Dec 19 19:28:00 2017 +0100 Slight update to our third-party libraries page. commit 8966aeef8f1a96c26823a83780e2e91313523e59 Author: Alan Garny Date: Tue Dec 19 19:19:52 2017 +0100 Some minor cleaning up. commit 878cc1936d0868900ed7cbf6837e9738600a5489 Author: Alan Garny Date: Tue Dec 19 19:18:58 2017 +0100 Simulation Experiment view plugin: some work on reworking our approach to the saving/reloading of a file (#1491). commit 53403ce65a84b4b04e81464ac230ad016a6adc6b Author: Alan Garny Date: Tue Dec 19 17:49:39 2017 +0100 Some minor cleaning up. commit af4e01bc3c1530ed15221ccc22b014b630eac8c4 Author: Alan Garny Date: Tue Dec 19 15:08:32 2017 +0100 Some minor cleaning up. commit 494e43de343f762121dba9313960ec7b8eefa3b4 Author: Alan Garny Date: Tue Dec 19 13:26:07 2017 +0100 Some minor cleaning up. commit 824c07778dfdcdbeffb5833c1ca7513e57d8577d Author: Alan Garny Date: Tue Dec 19 11:14:12 2017 +0100 Core plugin: reworked our approach to the saving/reloading of a file (#1491). commit 439ad2faf9946696ee0156c261635ebe8c947a96 Author: Alan Garny Date: Tue Dec 19 11:11:14 2017 +0100 SED-ML Editing view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 301ac4cdc2b18309c270dacfe7b61730d56a3a64 Author: Alan Garny Date: Tue Dec 19 10:30:34 2017 +0100 Central widget: get the mode and view tabs to work fine again. This was due to our work on issue #1481. commit 02352d4eacb3c4926892400b1bf382d10f18efba Author: Alan Garny Date: Mon Dec 18 19:23:22 2017 +0100 Central widget: we need our central widget to be enabled before we can give the focus to the new view. commit fe1e2b9e9400890e2df10dc6809a556ecce056e4 Author: Alan Garny Date: Mon Dec 18 18:31:02 2017 +0100 Editing view plugin: simplified things a bit (#1491). commit cdae6d7a42d848f8c3482b56b0567699c9c09ba2 Author: Alan Garny Date: Mon Dec 18 18:09:05 2017 +0100 Raw SED-ML view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 5021bcc8aa2fb7441897cdd6de6a380735214f79 Author: Alan Garny Date: Mon Dec 18 18:00:00 2017 +0100 CellML Annotation view plugin: reworked our approach to the saving/reloading of a file (#1491). commit ee513c6f059e0d025ecd2e2d8a4f4202b2cca79b Author: Alan Garny Date: Mon Dec 18 17:57:59 2017 +0100 CellML Annotation view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 6ab8a178d40d391868a4b2fe2d69a55b2eef6700 Author: Alan Garny Date: Mon Dec 18 17:51:15 2017 +0100 CellML Annotation view: slight improvement to the saving of a CellML file to which we have removed some annotations. commit 4aa9a298289b184ed6d4a3384bc4a5264b8cce59 Author: Alan Garny Date: Mon Dec 18 17:20:43 2017 +0100 CellML Annotation view: fixed a small problem with the hiding of our busy widget. This is an indirect result of our work on issue #1492. commit 5c41a601280b9658f76607328fb4035c557e5cb8 Author: Alan Garny Date: Mon Dec 18 17:05:49 2017 +0100 Raw Text view plugin: reworked our approach to the saving/reloading of a file (#1491). commit a5fed460444cfd3b72b3570661b7433afa24c8f4 Author: Alan Garny Date: Mon Dec 18 17:01:25 2017 +0100 Raw CellML view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 5b89970ee77230ce78681d9ee88f9cacbd818009 Author: Alan Garny Date: Mon Dec 18 15:55:46 2017 +0100 CellML Editing view plugin: reworked our approach to the saving/reloading of a file (#1491). commit b9b1787b772d4ce02d33c5d823f050f572e8c8e6 Author: Alan Garny Date: Mon Dec 18 15:54:40 2017 +0100 Revert "CellML Editing view plugin: reworked our approach to the saving/reloading of a file (#1491)." This reverts commit c6659bb9b6471e55fa4171877e6491859be44ff4. commit c6659bb9b6471e55fa4171877e6491859be44ff4 Author: Alan Garny Date: Mon Dec 18 15:44:23 2017 +0100 CellML Editing view plugin: reworked our approach to the saving/reloading of a file (#1491). commit 1e1b76b1686d2fcf1dba1724d9f228a0216a6a23 Author: Alan Garny Date: Mon Dec 18 15:39:16 2017 +0100 Editing view plugin: simplified things a bit (#1491). commit ca2e8c27d4f9e5a6f382094508f86ea2ce1df1db Author: Alan Garny Date: Mon Dec 18 10:45:56 2017 +0100 Editing and CellML Editing view plugins: don'\''t handle the `fileSaved()` interface (#1491). commit da714d2d23ff7cb20774e2234563df37b12ac5b3 Author: Alan Garny Date: Mon Dec 18 10:32:43 2017 +0100 Central widget: prevent some flashing. Some flashing was indeed occurring when in CellML Text view and modifying a file from outside of OpenCOR. When going back to OpenCOR, we were asked to reload the file. Then, to reload the file resulted in a commit f7c7d684ee7ad657d636079dd0a40735bfc43bd9 Author: Alan Garny Date: Mon Dec 18 09:47:32 2017 +0100 Slight update to our sample view documentation page (#1491). commit 8804ccf467a1b2a16d460d8c39f1e3489be64880 Merge: 720c195a1 4a418f39b Author: Alan Garny Date: Fri Dec 15 20:43:17 2017 +0100 Merge branch '\''master'\'' into issue1491. commit 53f60d79c0feb6e1509012a20c07ac2cb34949e7 Merge: 3c28a654e 4a418f39b Author: Alan Garny Date: Fri Dec 15 20:42:04 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 4a418f39bbde7cda2fc008cec203c1af954863b2 Merge: 6f3219366 1ed912752 Author: Alan Garny Date: Fri Dec 15 20:35:34 2017 +0100 Simulation Experiment view: made the (re)loading of remote files and SED-ML files / COMBINE archives much smoother (closes #1492). commit 1ed912752c150799cff80ac5377cb58c571514fb Author: Alan Garny Date: Fri Dec 15 20:04:17 2017 +0100 Slight update to our downloads page (#1492). commit 45cc5888fee377c4b798ebdf5ae0ab1288bbc5f2 Author: Alan Garny Date: Fri Dec 15 20:02:06 2017 +0100 Tool bar widget: prevent people from specifying a parent. This is crazy, but that’s the only way to get things to work properly on macOS!? (See code.) commit 088d52905949163f9dfaa6b034b81c5dc12fb3e2 Author: Alan Garny Date: Fri Dec 15 18:11:25 2017 +0100 Graph panel widget: make sure that the removal of graph panels doesn'\''t result in some flashes. commit 72864fb58035982034b47a3a32499410b1ad4ff1 Author: Alan Garny Date: Fri Dec 15 17:29:31 2017 +0100 Some minor cleaning up. commit a25a429d6b952ab9fccf640cd418f49b182e0f82 Author: Alan Garny Date: Fri Dec 15 17:16:45 2017 +0100 Simulation Experiment view: made the (re)loading of remote files and SED-ML files / COMBINE archives much smoother (#1492). Now, the only remaining issue is when OpenCOR starts with a file that is to be shown using the Simulation Experiment view. On macOS, the tool bar has a 3D look while it should have a flat one. It’s only that view for the first file. Indeed, if we switch to another file using the same view, then everything’s fine…!? commit b2d165c63b8fa558c2fb5dbf972143561aa3a719 Author: Alan Garny Date: Fri Dec 15 16:31:18 2017 +0100 Some minor improvement. commit 9f115b8ec86036b57f8e3e0aacb4e3817a1f194e Author: Alan Garny Date: Fri Dec 15 15:47:32 2017 +0100 Some minor cleaning up. commit 3b7d9788026866004627993404f1bc0988fe326e Author: Alan Garny Date: Fri Dec 15 10:48:39 2017 +0100 Simulation Experiment view: only process events here and there if we or our central widget is not showing our / its busy widget (#1492). This addresses the issue with our ‘famous’ black areas being temporarily shown when reloading a SED-ML file / COMBINE archive. commit 5fbc302551131f4bc319692573bd73a2024290f9 Author: Alan Garny Date: Fri Dec 15 10:36:45 2017 +0100 Simulation Experiment view: use some default sizes for graph panels if none are provided in a SED-ML file. commit 9b319e30d14c3218608735fed9ff077fc1cdac25 Author: Alan Garny Date: Fri Dec 15 10:35:59 2017 +0100 Graph panel widget: make sure that our graph panels are always visible. commit 720c195a14e2a1110b6417f92f8fdb1e2281da65 Merge: aa198dd2a 6f3219366 Author: Alan Garny Date: Thu Dec 14 18:05:58 2017 +0100 Merge branch '\''master'\'' into issue1491. commit 3c28a654e47a971d9e00414af0b84db564294464 Merge: d83abbd2f 6f3219366 Author: Alan Garny Date: Thu Dec 14 18:03:26 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 6f3219366d89822b718bc75834945f37600364aa Merge: 6197f0b89 8c9b9380c Author: Alan Garny Date: Thu Dec 14 17:59:52 2017 +0100 Cleaning up and improvements. commit 8c9b9380c90959593d619d380beb02951a52c7b6 Author: Alan Garny Date: Thu Dec 14 17:23:24 2017 +0100 Some minor cleaning up. commit 02af0f9de389fe039aaddf7787f2264b642d5053 Author: Alan Garny Date: Thu Dec 14 17:22:53 2017 +0100 Whenever possible, use a QByteArray rather than a QString when reading/writing a file. commit 0ff862a44ffd59bd28f6050442aca39799812396 Author: Alan Garny Date: Thu Dec 14 16:57:55 2017 +0100 Some minor cleaning up. commit 9d2e9030b356c0e534ea2c15f7c8c43b1d06902d Author: Alan Garny Date: Thu Dec 14 14:39:16 2017 +0100 Some minor cleaning up. commit d83abbd2f2a00056aada09ef120f7d354484f7e9 Author: Alan Garny Date: Thu Dec 14 13:46:51 2017 +0100 Some minor cleaning up. commit ec71d8e693a3f7929da529c25b10d69b95173176 Author: Alan Garny Date: Thu Dec 14 13:42:07 2017 +0100 Some minor cleaning up. commit cd84448592b9f91aaa481773bd1019b538eccdaf Author: Alan Garny Date: Thu Dec 14 13:26:12 2017 +0100 Some minor cleaning up. commit 876cf78b3a7cf406f6a0e47ea84ecc5778df2d79 Author: Alan Garny Date: Thu Dec 14 13:03:44 2017 +0100 Graph panels widget: make it possible to remove all the graph panels. Right now, when removing all graph panels, we remove all of them but the first one. Yet, there may be cases where we would also want to remove the first one (and have it replaced with a ‘blank’ graph panel since we must always have at least one graph panel). commit 164642c836369a4fb55b3d5180a959695acd3cf5 Author: Alan Garny Date: Thu Dec 14 12:57:45 2017 +0100 Graph panels widget: make sure that its sizes are properly set and tracked. commit 37e09c15aa0c95e8492720280324b59a490adc80 Author: Alan Garny Date: Thu Dec 14 12:49:14 2017 +0100 Some minor cleaning up. commit 344f02affff12fd12a9e02e0c36a108c14481c65 Author: Alan Garny Date: Thu Dec 14 11:42:51 2017 +0100 Slight update to our Sample view documentation. commit f0bb559d4f2162677df891337fd48ac9a842945a Merge: 1d7094864 e9fc41978 Author: Alan Garny Date: Thu Dec 14 11:42:07 2017 +0100 Merge branch '\''issue1366'\'' of https://github.com/agarny/opencor into issue1366 commit 1d7094864dba617ffef0acc3f9a4dc5713296ff3 Author: Alan Garny Date: Thu Dec 14 11:41:33 2017 +0100 Some minor cleaning up. commit b1e06b63c16197b87816ff0792c46d454445bed4 Author: Alan Garny Date: Thu Dec 14 11:39:37 2017 +0100 Functional tests: make sure that our SED-ML files and COMBINE archive list things in the right order. commit 6ae77dfdbe153ba8005fccf4fef9ec8a611603c5 Author: Alan Garny Date: Thu Dec 14 11:34:23 2017 +0100 View interface: don'\''t distinguish between the MIME types for opening and saving a file. Indeed, views that can open a given type of file should also be able to save that type of file. commit aa7311698546aba4b7abd7dd172b281bdafe861b Author: Alan Garny Date: Thu Dec 14 11:08:06 2017 +0100 Some minor cleaning up. commit 652bce19131348b732b84701291666c90120678e Author: Alan Garny Date: Thu Dec 14 11:03:35 2017 +0100 Some minor cleaning up. commit ecf33cde29a40b18937f2a1683be7dd9e6779aea Author: Alan Garny Date: Thu Dec 14 10:55:24 2017 +0100 Some minor cleaning up. commit 0f62b7d29af75ff091769ca60041f5e6d033f832 Author: Alan Garny Date: Thu Dec 14 10:49:42 2017 +0100 Some minor cleaning up. commit 3cafd523d32a13ad3b31ae93cf89bab0cafb4762 Author: Alan Garny Date: Thu Dec 14 10:48:20 2017 +0100 Some minor cleaning up. commit 72fa5d47f95dd47ea3ff12a6d320c5cdc0bd4278 Author: Alan Garny Date: Thu Dec 14 10:38:14 2017 +0100 Simulation Experiment view: when a file has been modified, only enable our reset button if it was a CellML file. commit c64541201d7a73e35fd511d3cdd5aac1ed779ec4 Author: Alan Garny Date: Thu Dec 14 10:35:55 2017 +0100 Simulation Experiment view: make sure that the 2D plots are always exported to SED-ML in the same order. commit 05d19d3c57631bee8513b673da882f1aa83a4e86 Author: Alan Garny Date: Thu Dec 14 10:32:58 2017 +0100 Some minor cleaning up. commit 48045676214f80e80d5852506d610c127fa07b81 Author: Alan Garny Date: Thu Dec 14 10:27:26 2017 +0100 Simulation Experiment view: don'\''t '\''manually'\'' track our file name. Indeed, this is bug prone (e.g. we forget to update it at some point). commit 095f4e9e31ddcabb5b05f9145a2ddf534f72b6e6 Author: Alan Garny Date: Thu Dec 14 10:03:36 2017 +0100 Some minor cleaning up. commit 2d402af3f322b37db6cc0580ed2852fbd35de045 Author: Alan Garny Date: Thu Dec 14 10:03:18 2017 +0100 Some minor cleaning up. commit 73206f1bcba17e78672013cbc1c1a72ba0f42f38 Author: Alan Garny Date: Thu Dec 14 09:56:12 2017 +0100 Simulation support: added a way to return the file name associated with a simulation. commit f17d9ac03a2efe649fe8b935a5daa07ae2f06fac Author: Alan Garny Date: Thu Dec 14 09:55:40 2017 +0100 Some minor cleaning up. commit 34265ac4cc5b931270f9758a5d8ac3cac0bd129e Author: Alan Garny Date: Thu Dec 14 09:55:23 2017 +0100 Some minor cleaning up. commit 5bd1ae079bc4d9450e19b7940fe5d875600dedc8 Author: Alan Garny Date: Thu Dec 14 09:18:59 2017 +0100 Some minor cleaning up. commit aa198dd2a60eaf2b1a4577d634a091d2ac932050 Author: Alan Garny Date: Wed Dec 13 18:48:53 2017 +0100 Some minor cleaning up. commit c8e90ff84b577aabd7c7c6f8987d7001c301d596 Author: Alan Garny Date: Wed Dec 13 17:29:08 2017 +0100 Sample view: don'\''t do anything when a file has been saved (#1491). commit 450630dc24ab28894bdc16f64506e3a509171a73 Author: Alan Garny Date: Wed Dec 13 16:47:08 2017 +0100 General: added the fileSaved() method interface (#1491). commit cd7ee9ba56d569d78f849fdb376e477976c0fa80 Author: Alan Garny Date: Wed Dec 13 16:19:14 2017 +0100 General: simplified our fileReloaded() method interface (#1491). commit e9fc41978e06631f77d7b8fced9535a0d3cff9f0 Author: Alan Garny Date: Wed Dec 13 11:54:02 2017 +0100 Some minor cleaning up. commit 95dc1dc22179706672713352d3d9c676696d9512 Author: Alan Garny Date: Wed Dec 13 10:40:43 2017 +0100 Some minor cleaning up. commit 9b6b6c0bc8c28839ff72f5efa699e2eb1214d91f Author: Alan Garny Date: Tue Dec 12 19:23:49 2017 +0100 Simulation Experiment view: make sure that the reloading of a SED-ML file results in all the graph panels being visible (#1366). commit bbb4a374f25d8457d190530dede699a84eb97d84 Author: Alan Garny Date: Tue Dec 12 19:03:18 2017 +0100 Some minor cleaning up. commit 4991d8d9cd0a87b2339c949aab081fc2886e46ad Author: Alan Garny Date: Tue Dec 12 18:33:57 2017 +0100 Some minor cleaning up. commit c8b19e1956aabcce98191133abc4eaa48e6c1dae Merge: d7cb6e795 6197f0b89 Author: Alan Garny Date: Tue Dec 12 17:45:00 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 6197f0b89acd9248333cc8e1b9b2d822a1a215f8 Merge: 0761532fb 7a3fb904f Author: Alan Garny Date: Tue Dec 12 17:44:06 2017 +0100 CellML API: fixed a small problem that made OpenCOR crash if a metadata id contained `:` (closes #1487). commit 7a3fb904f6c9fb19e5fd5fc5a55716a48a733474 Author: Alan Garny Date: Tue Dec 12 17:10:51 2017 +0100 Slight update to our downloads page (#1487). commit 7a3b10f8d462f2deab6c744d9233fc59c19ffcec Author: Alan Garny Date: Tue Dec 12 17:05:55 2017 +0100 Don'\''t build the CellML API anymore (#1487). commit 71de39cb07fdef2a46ae1e2ac2320c2f99be1b26 Author: Alan Garny Date: Tue Dec 12 17:05:29 2017 +0100 CellML API packages: updated our Windows, Linux and macOS binaries (#1487). commit e669ce1dc5335683fe2fe88b2afe2e947ff65caf Author: Alan Garny Date: Tue Dec 12 16:58:38 2017 +0100 CellML API package: ignore some warnings on Windows (#1487). commit 6d0ce5a9ec496e5d975266251597911793c74bc8 Author: Alan Garny Date: Tue Dec 12 16:58:08 2017 +0100 CellML API package: added a simple README.rst file (#1487). commit 2293e6e45573e68f707129438fd529a06eb6dd82 Author: Alan Garny Date: Tue Dec 12 16:29:55 2017 +0100 Get ready to build the CellML API (#1487). commit d7cb6e795663f3f2e01f15551ce0b3206369c9cd Merge: 01044bf56 0761532fb Author: Alan Garny Date: Tue Dec 12 13:56:24 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 0761532fbf1a76e0619c52c9d94a1d154fff1f57 Merge: a9bdbd41b 15b43e5ed Author: Alan Garny Date: Tue Dec 12 13:54:21 2017 +0100 Simulation Experiment view: to reload a CellML file when in development mode now actually reloads it (closes #1488). commit 15b43e5edad5a205cbf93b8fbf5833adf1d1c02e Author: Alan Garny Date: Tue Dec 12 13:13:25 2017 +0100 Slight update to our downloads page (#1488). commit 81f890652f876d2f5f2b186d463b72b5fef3eeb9 Author: Alan Garny Date: Tue Dec 12 13:11:23 2017 +0100 Simulation Experiment view: to reload a CellML file when in development mode now actually reloads it (#1488). commit 95b015e4c28dc7b8daf2a7046217e3aa1fbe2252 Author: Alan Garny Date: Tue Dec 12 11:22:16 2017 +0100 File handling interface: re-added pFileJustSaved to our fileReloaded() method (#1488). commit 81b2cda902caf6cdae95f609ba8cdd68a8e7dda4 Author: Alan Garny Date: Tue Dec 12 11:21:03 2017 +0100 Slight improvement to our main CMakeLists.txt file. commit fc738f2f3491250d659ff896c2a1735e38c70664 Author: Alan Garny Date: Tue Dec 12 10:37:17 2017 +0100 Simulation Experiment view: some work on fixing an issue whereby reloading a CellML file when in development mode doesn'\''t do anything (#1488). commit 01044bf5631aed48b28ebd3942873be867ba8187 Author: Alan Garny Date: Mon Dec 11 16:39:29 2017 +0100 Some minor cleaning up. commit b62bbd501d2aab115db389a419c6517bea59d6b5 Author: Alan Garny Date: Mon Dec 11 09:55:26 2017 +0100 Some minor cleaning up. commit 08a594f57d2ff24bf2e4ef198f134da5607dbf3a Author: Alan Garny Date: Fri Dec 8 18:06:06 2017 +0100 Simulation Experiment view: make sure that we can save a SED-ML file that references a remote CellML file (#1366). commit b743604c867c533bde9be3854b465b15b2923880 Author: Alan Garny Date: Fri Dec 8 17:47:52 2017 +0100 Graph panel widget: make sure that we provide the correct number of sizes. This came about as a result of opening https://models.physiomeproject.org/workspace/noble_1962/rawfile/c70f8962 407db00673f1fdcac9f35a2593781c17/noble_1962.sedml. That SED-ML file doesn’t use the ‘height’ property for a graph panel, so we ended up calling GraphPanelsWidget::setSizes() with an empty list of sizes, which gave our graph panel widget the impression that we didn’t have any graph panel. This meant that adding a graph panel (i.e. call GraphPanelsWidget::addGraphPanel()) would result in 1 graph panel rather than 4. On the other hand, if were to remove a graph panel (i.e. call GraphPanelsWidget::removeGraphPanel()), OpenCOR would just crash since it believed there were no graph panels. commit e8605216e8dae3b5241fdec7fa0811fa4cdbe4a1 Author: Alan Garny Date: Fri Dec 8 17:43:27 2017 +0100 Simulation Experiment view: prevent a remote SED-ML file / COMBINE archive from being modified (#1366). commit 3ad0ad4c49c51c9bd92caa98c1c28e999d86a446 Author: Alan Garny Date: Fri Dec 8 17:15:45 2017 +0100 Simulation Experiment view: make sure that our SED-ML data generators are always created in the same order (#1366). commit b56c85eec6ff78c5487f4c0d62f2442d8ea61250 Author: Alan Garny Date: Fri Dec 8 16:28:26 2017 +0100 Simulation Experiment view: only enable our reset button if a CellML file is considered modified (#1366). commit 98b751258db6ab18afe36274b952309c4a7eca41 Author: Alan Garny Date: Fri Dec 8 16:20:40 2017 +0100 Simulation Experiment view: can now save a modified SED-ML file (#1366). commit e7d8e29c542853151feedfcfbd365c779d0dd073 Author: Alan Garny Date: Fri Dec 8 16:19:23 2017 +0100 Some minor cleaning up. commit 8ccc5d77d85f0117748071a6cf8cc16ad176ba02 Author: Alan Garny Date: Fri Dec 8 13:54:01 2017 +0100 Slight update to our View interface now (#1366). The idea is so that we only get the relevant MIME type when saving a file, in cases where a view supports several MIME types. Indeed, the Simulation Experiment view can open CellML files, SED-ML files and COMBINE archives, but when one of the three types has been opened, we only want to be able to save under that type. commit 8d17899facecd6848e1c45a2be13a588bdb9e6b6 Author: Alan Garny Date: Fri Dec 8 13:37:39 2017 +0100 Some minor cleaning up. commit 2fd1bf1f87e2a9498e3ebc13c9b9ad884ebb4f35 Author: Alan Garny Date: Fri Dec 8 11:52:14 2017 +0100 Slight update to our View interface now (#1366). Indeed, the old View interface was because the Simulation Experiment view could open a CellML file, SED-ML file or COMBINE archive, but could only save a CellML file while we are going to be able to save all three types. commit 6c2735cba0e166dca31a4b8fa72b621e8b71cc0b Author: Alan Garny Date: Fri Dec 8 11:34:45 2017 +0100 General: save as such when saving a file under a new name. Until now, if we wanted to save a non-new and non-modified file under a new name (using the “File” | “Save As…” menu), then we used to make a simple physical copy of the file. This was fine for a CellML file, but not always fine for a SED-ML (while still fine for a COMBINE archive) since the relative path to its corresponding CellML file might now be different. So, instead, we should always save a file, whether not-new and/or not-modified. commit 02a906213060652294eead95221f7037da4963f9 Author: Alan Garny Date: Fri Dec 8 11:13:29 2017 +0100 Simulation Experiment view: make sure that all our internal properties get properly initialised upon reloading a file (#1366). commit 0f00fadb3fde08b3074b52d0196f25bf3383f4ae Author: Alan Garny Date: Fri Dec 8 11:12:50 2017 +0100 Simulation Experiment view: initialise some internal properties after painting ourselves as opposed to being shown for the first time (#1366). Indeed, to close a SED-ML file and have another getting active as a result was making that new SED-ML file modified… commit 0889aa5a522aa2a230ac9a667e54e38ddad6b579 Author: Alan Garny Date: Fri Dec 8 10:43:38 2017 +0100 Simulation Experiment view: reworked our SimulationExperimentViewSimulationWidget::save() method (#1366). commit ca3dc14de9ee28607e638b351939ea08cad52ee6 Author: Alan Garny Date: Fri Dec 8 10:37:28 2017 +0100 Simulation Experiment view: reworked our SimulationExperimentViewSimulationWidget::save() method (#1366). commit b9afa69c1f7ffd7e0217ab896cf36385cf5b62db Author: Alan Garny Date: Thu Dec 7 20:00:26 2017 +0100 Some minor cleaning up. commit 032b200230f3f9e6d03f97148b0f4b28050e8144 Author: Alan Garny Date: Thu Dec 7 19:44:56 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). Oops, forgot to have mGraphPanelPropertiesModified and mGraphsPropertiesModified properly initialised when our graph panels become visible. This meant that modifying, say, a simulation property value and change it back would result in the SED-ML file / COMBINE archive still being considered as modified. commit ea356e17c0d9a62f11fba7cd82b4d463cc20416b Author: Alan Garny Date: Thu Dec 7 19:32:53 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). Better handle the addition/removal of a graph panel. Now, also handle the addition/removal of graphs. commit effc1f66bcb3d6464e31cc73fb4306a5aa242d38 Author: Alan Garny Date: Thu Dec 7 19:16:50 2017 +0100 Some minor cleaning up. commit db7103cbf2cde1a18755d2512d9c9381f4156aa6 Author: Alan Garny Date: Thu Dec 7 19:13:55 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). Can now handle a change in the height of a graph panel. commit 58bfb3d0d97f8d534fa5e010d2cefe14132e0ad0 Author: Alan Garny Date: Thu Dec 7 18:07:06 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). To open, say, a SED-ML file then switch to another file and then back would result in the original SED-ML file to be considered modified while it clearly shouldn’t have been. That’s because mGraphPanelPropertiesModified and mGraphsPropertiesModified were not fully set, which is important since updateFileModifiedStatus() now checks their keys… commit 8d872174b33a136d2af92d99c92330c1db9a9dae Author: Alan Garny Date: Thu Dec 7 17:43:26 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). Can now handle the addition/removal of a graph panel. commit 5947d7b0dc08c96a55ca9c61690b0676bac00710 Merge: e1dba80d9 a9bdbd41b Author: Alan Garny Date: Thu Dec 7 17:20:00 2017 +0100 Merge branch '\''master'\'' into issue1366. commit a9bdbd41b3f9c8c61cd1412476e0739d656d9aa2 Merge: e72a64bb6 c34c09d92 Author: Alan Garny Date: Thu Dec 7 17:13:44 2017 +0100 OpenSSL: upgraded to version 1.0.2n (closes #1483). commit e1dba80d938921f15b2e31e011ab6532dc8f478b Author: Alan Garny Date: Thu Dec 7 17:13:20 2017 +0100 Graph panel widget: make it possible to remove the last graph panel. This is useful when we have customised a graph panel and want to start afresh. commit c34c09d92dfcdeeae4006b7c62b827cc6e4cef1e Author: Alan Garny Date: Thu Dec 7 16:33:05 2017 +0100 OpenSSL package: don'\''t build our package anymore (#1483). commit e3df3c04cefe18f128c8580341c7e46b23d68cfc Author: Alan Garny Date: Thu Dec 7 16:31:33 2017 +0100 OpenSSL: upgraded to version 1.0.2n (#1483). commit ccb1535910a03d19add6be1ca94bd276501a4cbf Author: Alan Garny Date: Thu Dec 7 15:57:57 2017 +0100 Slight updates to our third-party libraries and downloads pages (#1483). commit 139b98b4dccb4dcc05567cc64e564927d88ff94a Author: Alan Garny Date: Thu Dec 7 15:56:37 2017 +0100 OpenSSL: upgraded to version 1.0.2n (#1483). commit 351fd5da750ceb83710a651f8518be6428cfe7d9 Author: Alan Garny Date: Thu Dec 7 15:43:41 2017 +0100 OpenSSL package: getting ready to build our package (#1483). commit 9cefd564b25a741c37053af7ec8bfa07cc44bf2d Author: Alan Garny Date: Wed Dec 6 18:23:42 2017 +0100 Graph panel widget: fixed a small problem with adding a graph panel to a SED-ML file / COMBINE archive. Indeed, say that we have 3 graph panels of different sizes and then add another graph panel. Then, all 4 graph panels used to have the same size…!? commit c1e187393a4f157bc220621a8b66c070ed9b9af8 Author: Alan Garny Date: Wed Dec 6 18:11:06 2017 +0100 Some minor cleaning up. commit 8be43f1093cb56b97ad845bc6c5a68e5e9a04feb Author: Alan Garny Date: Wed Dec 6 16:21:56 2017 +0100 Simulation Experiment view: prevent some black areas from popping up when reloading our noble_1962_remote.sedml file. Basically, the black areas pop up when we resize our busy widget. So, don’t show our busy widget when reloading the current file. Not ideal, but still better than having those black areas popping up… commit 5926eeffb3c650876af123a81bdb17e13abe21ec Author: Alan Garny Date: Wed Dec 6 14:23:32 2017 +0100 Some minor cleaning up. commit 46d80217f2fb997fea77c873a6341eb8790087e1 Author: Alan Garny Date: Tue Dec 5 17:06:06 2017 +0100 SimulationExperiment view: can now determine when a SED-ML file / COMBINE archive has been modified (and modified back) (#1366). commit 84915c4a6e70571552a292b61c7c24bf0dc63e8d Author: Alan Garny Date: Tue Dec 5 14:08:48 2017 +0100 Some minor cleaning up. commit 5c017a72f69a8962f17ee28cd745637c30e435dc Merge: d00e3c1ca e72a64bb6 Author: Alan Garny Date: Tue Dec 5 10:25:31 2017 +0100 Merge branch '\''master'\'' into issue1366. commit e72a64bb6919448ac07e3940ee61c11158921e7a Author: Alan Garny Date: Tue Dec 5 10:24:22 2017 +0100 Slight update to our prerequisites page [ci skip]. commit d00e3c1ca59f69776c74f017b33c709165fad173 Author: Alan Garny Date: Mon Dec 4 17:16:15 2017 +0100 General: slight improvement to the way we further initialise a SED-ML file / COMBINE archive. commit 21b715d8c4b86a870416117656470926e2cbed2a Author: Alan Garny Date: Mon Dec 4 15:46:21 2017 +0100 Simulation Experiment view: customised our SED-ML export drop-down button (#1366). commit 39d0c137bcd72eabd424a1ef683b2f10abaf6fb6 Author: Alan Garny Date: Mon Dec 4 15:11:08 2017 +0100 Some minor cleaning up. commit 83882d60beabe86b21906bb854727840832d8f51 Merge: 40054c68a 5ca1a92f7 Author: Alan Garny Date: Sat Dec 2 14:49:17 2017 +0100 Merge branch '\''master'\'' into issue1366. commit 5ca1a92f7d3607ffd0527fdcb905d842b49c0ddc Merge: a3029c6ad 9b18d525a Author: Alan Garny Date: Sat Dec 2 14:46:00 2017 +0100 General: addressed a problem with quickly changing files potentially resulting in the wrong view being shown (closes #1481). commit 9b18d525a8cf45a522d141b861cafcae37f7ecec Author: Alan Garny Date: Sat Dec 2 14:12:43 2017 +0100 Slight update to our downloads page (#1481). commit 2243f001469fbc08a4e4cc8114e2aa004d9a90a2 Author: Alan Garny Date: Sat Dec 2 14:08:40 2017 +0100 General: slight improvement to the way we further initialise a SED-ML file / COMBINE archive. commit 5b60ea0d43b6998d439cae607ba3705a3f4446dd Author: Alan Garny Date: Sat Dec 2 13:42:45 2017 +0100 General: addressed a problem with quickly changing files potentially resulting in the wrong view being shown (#1481). commit 40054c68afb8f4901dcdfd71a7c9c33aa1828d2f Author: Alan Garny Date: Fri Dec 1 13:38:23 2017 +0100 Some minor cleaning up. commit 641b7351a8b302e49b11acc1944fabf9abaa99cb Author: Alan Garny Date: Fri Dec 1 13:33:28 2017 +0100 Some minor cleaning up. commit b7e5c4592073f7ab2c85822c4a23be7fb7a5d378 Author: Alan Garny Date: Fri Dec 1 13:30:48 2017 +0100 Some minor cleaning up. commit bc386c5132376546cbf85fa811805f5636a52dc4 Author: Alan Garny Date: Fri Dec 1 11:40:15 2017 +0100 Simulation Experiment view: nothing should prevent us from exporting a simulation to SED-ML even if no simulation has been run (#1366). commit a3029c6adbc7400d3fbc1144277d2a1ffb0155b0 Merge: 51cd480ee 3cc6810c6 Author: Alan Garny Date: Thu Nov 30 16:43:07 2017 +0100 Graph panel widget: now have the legend buttons use the same background as the plot area (closes #1477). commit 3cc6810c6cbc36f33087fe8ae391b5ab3996093e Author: Alan Garny Date: Thu Nov 30 16:08:30 2017 +0100 Travis CI: (temporarily?) disabling macOS builds. Indeed, there are currently nearly 600 jobs waiting in the macOS queue, so… it’s going to take a long time to clear. Yet, no incident is currently being reported on macOS, so it just looks like more and more people are trying to build on macOS and because Travis CI doesn’t have the same resources on macOS as on Linux, it takes much longer to build on that platform. Now, keeping all of that in mind, we happen to CI on Windows, Linux and macOS through Jenkins, so maybe it’s just fine to disable macOS builds on Travis CI…? The caveat, though, is that for some reasons our Jenkins builds are only triggered when merging something… commit 30060a1e13e25c884138b54f09700540d6ec1b90 Author: Alan Garny Date: Thu Nov 30 15:54:46 2017 +0100 Slight update to our downloads page (#1477). commit 33ae70048e1000ebc6734ea4ed43f40fe8daef73 Author: Alan Garny Date: Thu Nov 30 15:51:55 2017 +0100 Functional tests: slight updates to our SED-ML files and COMBINE archive (#1477). commit 8cf0ccc2b4ed8a43d15f3c7f6d1169a43582ab2c Author: Alan Garny Date: Thu Nov 30 15:38:25 2017 +0100 Graph panel widget: added a foreground colour for a graph panel, which is used (for now at least) the text of a legend (#1477). Indeed, say that you have a black background for the graph panel (i.e. plot area) and keep the default (i.e. black) foreground colour for the surrounding area, then the text of a legend will black on black! commit 86e099efb8d0b1652c1776c003c506a264b32250 Merge: cfd6c6b55 51cd480ee Author: Alan Garny Date: Thu Nov 30 13:32:08 2017 +0100 Merge branch '\''master'\'' into issue1477. commit cfd6c6b5510158d8da7c3e7d5b545f8f6c5a7c0c Author: Alan Garny Date: Thu Nov 30 13:31:14 2017 +0100 Graph panel widget: the legend buttons now use the same background as the plot area (#1477). commit 51cd480ee5f96e1a5ad0f2830e3133ef3f13b647 Merge: 641e1011a 4702f7165 Author: Alan Garny Date: Thu Nov 30 13:26:50 2017 +0100 Graph panel widget: the legend context menu now works again (closes #1478). commit a54eb7415f9ad1f77520de6eed0331f6336f976a Author: Alan Garny Date: Thu Nov 30 13:20:04 2017 +0100 Some minor cleaning up. commit f63b5e7005d376877a33fb6e5aea6c324ad227e0 Author: Alan Garny Date: Thu Nov 30 13:03:18 2017 +0100 Some minor cleaning up. commit 4702f7165744c28b8879b6e9a9a070dab058ff4f Author: Alan Garny Date: Thu Nov 30 10:34:57 2017 +0100 Slight updates to our downloads pages (#1478). commit 89bea874e30468885393b3e6d1978a9255171d2f Author: Alan Garny Date: Thu Nov 30 10:29:53 2017 +0100 Graph panel widget: the legend context menu now works again (#1478). commit 641e1011a2f3b901554566e693de85a0d347fd89 Merge: c42364a21 4601e90d4 Author: Alan Garny Date: Wed Nov 29 20:02:58 2017 +0100 New snapshot. Closes #1475. commit 4601e90d4bfa551c1bd8591af827e2b3980fc8ff Author: Alan Garny Date: Wed Nov 29 16:39:01 2017 +0100 New snapshot. commit b47c394cf32c9f30bfb9c9689468d858894dfe66 Author: Alan Garny Date: Wed Nov 29 16:38:06 2017 +0100 Slight update to a translation file. commit f662f655e0dcd94b28643b38c798877fc513363e Author: Alan Garny Date: Wed Nov 29 16:30:13 2017 +0100 Slight updates to our downloads and what is new pages (#1475). commit 2c29d832ebd51c924a0cd7a4699dd1858edcb273 Author: Alan Garny Date: Wed Nov 29 16:26:18 2017 +0100 Graph panel widget: prevent the plot canvas can from becoming black in some cases (#1475). commit c42364a210c023f5dcdaa949ab36f55ec9362a4b Merge: 2ef5bafc0 da34913fb Author: Alan Garny Date: Wed Nov 29 16:16:30 2017 +0100 Simulation Experiment view: can now distinguish between the background colour of the plot area and that of the surrounding area (#1473). commit da34913fba9de5e396f22baea4781d38bb649012 Author: Alan Garny Date: Wed Nov 29 15:09:42 2017 +0100 Slight updates to our downloads pages (#1473). commit 72cd1c0066e6c108df9f89aed8412a0559f56658 Author: Alan Garny Date: Wed Nov 29 15:08:52 2017 +0100 Slight updates to our downloads pages (#1473). commit 9405ae5fb5d675d0e174a554c23ca8b722f60f58 Author: Alan Garny Date: Wed Nov 29 15:08:28 2017 +0100 Some minor cleaning up. commit 835a1a6d15fa5ba4caea63e0b0be6709ecf7ad64 Author: Alan Garny Date: Wed Nov 29 14:15:36 2017 +0100 Some minor cleaning up (#1473). commit 8ad781642539fd7fd9226912f107a808e5852b30 Author: Alan Garny Date: Wed Nov 29 14:12:12 2017 +0100 Some minor cleaning up (#1473). commit f1ea23d93167d7b638cfdba833c029af6a1b75ee Author: Alan Garny Date: Wed Nov 29 13:55:44 2017 +0100 Some minor cleaning up (#1473). commit ec0f9fc540661478c7c056fed8457fffee96c7f0 Author: Alan Garny Date: Wed Nov 29 13:36:38 2017 +0100 Functional tests: updated our SED-ML files and COMBINE archive (#1473). commit a01b386d76c6def6ee22356188ad7527c09d1617 Author: Alan Garny Date: Wed Nov 29 13:33:09 2017 +0100 Some minor cleaning up. commit 4be0925c17c75bec8d8c8cbb4ea7a2aac3cf6838 Author: Alan Garny Date: Wed Nov 29 13:25:34 2017 +0100 GraphPanel widget: now distinguish between the background colour for the plot area and the surrounding area (#1473). commit 2ef5bafc02f8d7a7fd972d7dacc54b1c46afbb20 Merge: 99c49e213 83608a479 Author: Alan Garny Date: Tue Nov 28 18:25:37 2017 +0100 New snapshot. commit 83608a47961ae81730524c6c221323cffc62fea0 Author: Alan Garny Date: Tue Nov 28 18:20:58 2017 +0100 Functional tests: updated our SED-ML files. commit e5fc57d27e692e885e159f260f997e1b5fbf09b2 Author: Alan Garny Date: Tue Nov 28 18:09:29 2017 +0100 Functional tests: updated our local and remote SED-ML files. commit 8d5e3eb1c3dd7a968fb2c731f436ea2a4b4d6877 Author: Alan Garny Date: Tue Nov 28 18:06:23 2017 +0100 Some minor cleaning up. commit 5f3db6a8bcd828206f1815c6a134c97fdd0edc3f Author: Alan Garny Date: Tue Nov 28 18:01:56 2017 +0100 Some minor cleaning up. commit 2193d91fe86fa78af2d578f9bdf35c6b24b98f45 Author: Alan Garny Date: Tue Nov 28 17:25:57 2017 +0100 Functional tests: added a SED-ML file that demonstrates the customisation of graph panels and graphs. commit 99c49e2136c1f8598a6bc6213aefe90b17a793c3 Merge: b1aeac1fb 6c2139e73 Author: Alan Garny Date: Tue Nov 28 16:50:30 2017 +0100 New snapshot. commit 6c2139e73fc321d12d416072fe33e00f5993fe3f Author: Alan Garny Date: Tue Nov 28 15:58:44 2017 +0100 New snapshot. commit 90bc7d044cf5951bc1ae6a3bc0c1d1aefc41927d Author: Alan Garny Date: Tue Nov 28 15:57:40 2017 +0100 SimulationExperiment view: make sure the GUI is all fine before disabling updates. This prevents some further black flashes on macOS when reloading a SED-ML file that references a remote CellML file. commit 2db467f9b39a5c9b945bb18c639719024616db04 Author: Alan Garny Date: Tue Nov 28 15:41:54 2017 +0100 Make sure that a file is still being managed before checking it. commit 61b27b97eabd037ffa5261fe93c7afeedf24064d Author: Alan Garny Date: Tue Nov 28 15:41:09 2017 +0100 Revert "New snapshot." This reverts commit 5cfbed2f34440852e550def2bb727b0143d9463d. commit b1aeac1fb69894f72502bc4221ea410734959eea Merge: 979e9aa5c 5cfbed2f3 Author: Alan Garny Date: Tue Nov 28 12:41:18 2017 +0100 New snapshot. commit 5cfbed2f34440852e550def2bb727b0143d9463d Author: Alan Garny Date: Tue Nov 28 11:30:59 2017 +0100 New snapshot. commit 979e9aa5cca3d9ddd7861051650672390c41a57e Merge: 9c1397bcf b98ba58c0 Author: Alan Garny Date: Tue Nov 28 11:27:27 2017 +0100 Some cleaning up. commit b98ba58c09c5383b92d5b64668d46cd1a4a8ff79 Author: Alan Garny Date: Tue Nov 28 10:52:33 2017 +0100 Slight update to our third-party libraries page. commit a24221c40e52ad9e2dc71b7bb8784ccc5efc6b4a Author: Alan Garny Date: Tue Nov 28 10:39:46 2017 +0100 Slight improvement to our urlArguments() method. commit 9c1397bcfdc40fcaaefb312eb2d241521f6d1389 Merge: 971a611cc ec5905bfa Author: Alan Garny Date: Tue Nov 28 09:38:20 2017 +0100 Simulation Experiment view: can now show the legend of the different graphs shown in a graph panel (closes #1171). commit ec5905bfa7737d8622b6925c3663c07f33ca3104 Author: Alan Garny Date: Mon Nov 27 17:38:28 2017 +0100 Slight update to our downloads page (#1171). commit 254f7a6201b64293a26bf5c986983a4db79cf581 Author: Alan Garny Date: Mon Nov 27 16:49:49 2017 +0100 GraphPanel widget: account for the size of the font when aligning a graph panel with its neighbours (#1171). It’s working fine except if the legend is active: the graph panel will become physically wider if we increase the font size (since the legend gets wider) while, if anything, its plot should become narrower, which is what actually happens if the simulation had been exported to a SED-ML file and that we were to edit the file to increase the font size (as opposed to doing it through the GUI). commit c03763d308170770639a6de65359e49ddf82d1b4 Author: Alan Garny Date: Mon Nov 27 16:30:18 2017 +0100 Some minor cleaning up. commit d1ed38cff5e61bf4b7d98b3541494f554acba958 Author: Alan Garny Date: Mon Nov 27 15:45:50 2017 +0100 Some minor cleaning up. commit c8108fb64b70d0de0b0df7650e4bb1feed576978 Author: Alan Garny Date: Mon Nov 27 14:55:21 2017 +0100 Qt: addressed a regression issue (?) with QUrl::adjusted(). commit d5e8d2206b5d27f357ca5f7c78325f57c44ff440 Author: Alan Garny Date: Mon Nov 27 10:57:06 2017 +0100 Some minor cleaning up. commit b452fac15928b750fb6e1b75c0699aa3904afd4f Author: Alan Garny Date: Mon Nov 27 10:23:57 2017 +0100 GraphPanel widget: don’t force the alignment when not necessary (#1426). This had been modified in commit 9c3eec2b6fee47c1b93cf6d7d1a5a7a8a2668810 to ensure proper alignment when adding a graph panel when another had a Y title. However, this was unnecessarily realigning things and therefore slowing things down (a lot). So, back to what we originally had. As for adding a graph panel when another has a Y title, it looks like our various changes (as part of issues #1426 and #1171) indirectly addresses it since everything is still fine. commit c09fe3b723ecde7f00af2d33267070ab400f3f32 Merge: c299a3b2a 971a611cc Author: David Brooks Date: Sat Nov 25 16:10:15 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit baf6668005cffa421a5c7c90ddbcb9da041a03ee Author: Alan Garny Date: Fri Nov 24 19:21:40 2017 +0100 Some minor cleaning up. commit 41fae409423dd5a98b1e0d8bb53c2ff3eb1c4d72 Merge: c622c3d67 971a611cc Author: Alan Garny Date: Fri Nov 24 14:32:20 2017 +0100 Merge branch '\''master'\'' into issue1171. commit 971a611cc4d9218df356afcb8b872a9651bc847c Merge: 78aea45cb 65bee0862 Author: Alan Garny Date: Fri Nov 24 14:31:40 2017 +0100 QScintilla: upgraded to version 2.10.2 (closes #1466). commit 65bee08623cfd1f967f4dea08ee28cbcef81f628 Author: Alan Garny Date: Fri Nov 24 13:49:41 2017 +0100 Slight update to our downloads page (#1466). commit cb129e911446f7c68e6cb2c389f0cc508de447bf Author: Alan Garny Date: Fri Nov 24 13:47:42 2017 +0100 Don'\''t build our QScintilla package anymore (#1466). commit 9ac12b50be42dce2be6f1701089b9ad9bb8f6d3b Author: Alan Garny Date: Fri Nov 24 13:47:16 2017 +0100 QScintilla package: updated our binaries (#1466). commit f3a831934ef81479b9dcc7c0ee38b409dc6dd7d0 Author: Alan Garny Date: Fri Nov 24 13:28:45 2017 +0100 Slight update to our QScintilla CMakeLists.txt file (#1466). commit dc499683b763aa8e93ab9ee7086ed7afab0cfe52 Author: Alan Garny Date: Fri Nov 24 13:14:05 2017 +0100 Slight update to our QScintilla CMakeLists.txt file (#1466). commit 9224337feec219915bf966d000fedae79c3d72e0 Author: Alan Garny Date: Fri Nov 24 13:13:10 2017 +0100 Getting ready to build our QScintilla package (#1466). commit cf688a76f273189dc1e83bc7c48459a3bb368f04 Author: Alan Garny Date: Fri Nov 24 13:11:48 2017 +0100 Slight update to our third-party libraries page (#1466). commit c622c3d676c6211a76671394748f1fa780104ab4 Author: Alan Garny Date: Fri Nov 24 11:39:16 2017 +0100 GraphPanel widget: properly handle the adding/removal of graphs when it comes to showing/hiding the legend of different graph panels (#1171). commit 6b450f0e545edb23e283acc8b02cb8181969d083 Author: Alan Garny Date: Fri Nov 24 10:21:58 2017 +0100 Some minor cleaning up. commit 0a5e7071ac23cce725436a1e663fefda8c570d5d Author: Alan Garny Date: Fri Nov 24 10:21:19 2017 +0100 Some minor cleaning up. commit e9049d0b70be908410db3c5d7c6cad9b3198494a Author: Alan Garny Date: Fri Nov 24 10:00:25 2017 +0100 Some minor cleaning up. commit 1a934ea769570e0b45def019b5f5aad01debc115 Author: Alan Garny Date: Fri Nov 24 09:50:35 2017 +0100 SimulationExperiment view: by default, we want the '\''graphs'\'' panel to be active (rather than the '\''graph panels'\'' panel). commit cdb185d72dd5cd135d066f4b853ab6155e6dccdd Author: Alan Garny Date: Fri Nov 24 09:43:37 2017 +0100 SimulationExperiment view: fixed a problem with the un/select all graphs context menu. It used to un/select the graphs of all graph panels, as opposed to those of the current graph panel. (FWIW, that problem has always been present, i.e. since OpenCOR 0.2 when we introduced several graph panels!) commit c178774cb8e1affa7ca38a3870f643fe5bcf9dac Author: Alan Garny Date: Thu Nov 23 17:51:54 2017 +0100 Some minor cleaning up. commit 100df9287ec8cd52d8dd9b6a2e89ffc014a01cbf Author: Alan Garny Date: Thu Nov 23 17:49:54 2017 +0100 SimulationExperiment view: make the legend items clickable, so that we can show/hide a given graph (#1171). commit 741c78e36625b750e3f648a52f7e9a72e8e4a864 Author: Alan Garny Date: Thu Nov 23 15:27:09 2017 +0100 GraphPanel widget: now have a context menu for the X/Y log axes and the legend (#1171). commit 6386c2f23641c6317c151fbd8167cf01f21286a6 Author: Alan Garny Date: Thu Nov 23 14:26:46 2017 +0100 GraphPanel widget: some work on having a context menu for the X/Y log axes and the legend (#1171). commit 96135f00d70781e1cf28619e81d041bd1d06e1b7 Author: Alan Garny Date: Thu Nov 23 14:08:13 2017 +0100 Some minor cleaning up. commit 8f83eaa363ee0d37620188e6232873bfc6532343 Author: Alan Garny Date: Thu Nov 23 13:35:43 2017 +0100 Some minor cleaning up. commit dc90dbefbe57c320ad61485810735409de0a0471 Author: Alan Garny Date: Thu Nov 23 11:59:03 2017 +0100 GraphPanel widget: fixed a problem with Qwt'\''s rendering of legends when exporting to PDF, etc. (#1171). commit 3956373a5f0af8d4286de32642181a8622ecd20a Merge: 777593f0d 78aea45cb Author: Alan Garny Date: Thu Nov 23 11:40:08 2017 +0100 Merge branch '\''master'\'' into issue1171. commit 78aea45cb33cff17a6104b6ad3834070538a8544 Author: Alan Garny Date: Thu Nov 23 11:38:53 2017 +0100 Some minor cleaning up [ci skip]. commit 203078744e3c5658085b312e911a372986d0240d Author: Alan Garny Date: Thu Nov 23 11:38:26 2017 +0100 Some minor cleaning up [ci skip]. commit 777593f0d11db05d37084ffc5ec81967ab9aa911 Author: Alan Garny Date: Thu Nov 23 10:42:37 2017 +0100 GraphPanel widget: make sure that our legend is visible when enabled and after having added a graph (#1171). commit a6ae0afbd4d38704de55c80062f85209e05a16af Author: Alan Garny Date: Thu Nov 23 09:20:05 2017 +0100 Some minor cleaning up. commit c7ed1084de81a1113bb70362519e08d9a180abd7 Author: Alan Garny Date: Wed Nov 22 20:04:09 2017 +0100 GraphPanel widget: make sure that our legend is visible when enabled and after having added a graph (#1171). commit edc0568398100bd2440b15d6a04b33bc9078141e Author: Alan Garny Date: Wed Nov 22 19:56:54 2017 +0100 SimulationExperiment view: updated the alignment of our graph panels to account for the fact that they can have a legend (#1171). commit 60f6865fe0ef7728af5cea72d641b450a81e098a Author: Alan Garny Date: Wed Nov 22 19:55:13 2017 +0100 Some minor cleaning up. commit b207f3652e0e5c373af8ebe8c46413339cd79fe7 Merge: 4b8f8e6d9 412732275 Author: Alan Garny Date: Wed Nov 22 15:42:00 2017 +0100 Merge branch '\''master'\'' into issue1171. commit 412732275e134ee668b04d551c90f21e8120a9e2 Author: Alan Garny Date: Wed Nov 22 15:41:20 2017 +0100 Some minor cleaning up. commit 4b8f8e6d9a54c2a1b95111532a065c09795a62cb Merge: b7db1a8fb 631258b59 Author: Alan Garny Date: Wed Nov 22 15:35:20 2017 +0100 Merge branch '\''master'\'' into issue1171. commit 631258b59b3f4c675a902be581da15e3b42fee81 Merge: 60885f797 6a8a1f562 Author: Alan Garny Date: Wed Nov 22 15:33:29 2017 +0100 Qt: upgraded to Qt 5.9.3 LTS (closes #1464). commit 6a8a1f5628930e5259c022bfc6e33a7240d2fe4a Author: Alan Garny Date: Wed Nov 22 14:19:32 2017 +0100 Things to check when upgrading Qt. commit e1d487bd6f9703e17015c200a3de21e87db1069c Author: Alan Garny Date: Wed Nov 22 14:00:26 2017 +0100 General: upgraded to Qt 5.9.3 LTS (#1464). commit b7db1a8fbc950bcbe57f47a5b9fc26fd837b4f1e Author: Alan Garny Date: Wed Nov 22 10:09:43 2017 +0100 Some minor cleaning up. commit dfcb9b88d6b5b53d37453f199f13c3b53bdb258d Author: Alan Garny Date: Wed Nov 22 09:41:11 2017 +0100 Some minor cleaning up. commit 9f233d6766e47800f6420a1f62a75eacb54b7c54 Author: Alan Garny Date: Wed Nov 22 09:40:53 2017 +0100 SimulationExperiment view: make sure that all legends have the same width (#1171). commit 4b93bd015226097dc14e3284f61952785b00ec6d Author: Alan Garny Date: Tue Nov 21 18:28:52 2017 +0100 Some minor cleaning up. commit 1cd7d1b7cb49f6836f449115e65f086659fb7c0a Author: Alan Garny Date: Tue Nov 21 18:24:58 2017 +0100 Some minor cleaning up. commit ab62e5555683b4c12ec7431dfddebca7ad9729e8 Author: Alan Garny Date: Tue Nov 21 17:20:16 2017 +0100 SimulationExperiment view: now use the font size and foreground colour properties to customise our legend (#1171). commit a6493a78669aca0dae404a4a28d3ae03460b9ac5 Author: Alan Garny Date: Tue Nov 21 17:19:01 2017 +0100 Some minor cleaning up. commit 39109dc755c2cd7a651f120e997a26cc81e9cdc3 Author: Alan Garny Date: Tue Nov 21 15:30:43 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget (#1171). commit 8a5146584e5706714b980051fe5645e8c9303dc5 Author: Alan Garny Date: Tue Nov 21 15:24:43 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget (#1171). commit 3feb9eb19d157677edeb1c6aca83c136e69c0512 Author: Alan Garny Date: Tue Nov 21 11:11:09 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget (#1171). commit c5c209d250bb95b69ea11e692ad3f6306789ef5d Author: Alan Garny Date: Tue Nov 21 10:51:27 2017 +0100 Some minor cleaning up. commit a0e0d3082b08364c03502e26f5fb66563b2f65e9 Author: Alan Garny Date: Tue Nov 21 10:44:31 2017 +0100 Some minor cleaning up. commit f69292b7b6a5fede136c3c750220987970c73861 Author: Alan Garny Date: Tue Nov 21 10:35:46 2017 +0100 SimulationExperiment view: added SED-ML support for our new graph title property (#1171). commit 2f75423fb38bef3b44a2d551364c8f876981aa94 Author: Alan Garny Date: Tue Nov 21 10:14:06 2017 +0100 Some minor cleaning up. commit 8b58b4ebece00114aecfa335f68986b33afbae47 Author: Alan Garny Date: Mon Nov 20 20:22:57 2017 +0100 SimulationExperiment view: added a Title property for our graphs (#1171). Now, we need to add SED-ML support for it. commit 90e8afc359ba90be95a09816603373cace005a92 Author: Alan Garny Date: Mon Nov 20 19:58:11 2017 +0100 PropertyEditor widget: make sure that the value of some of our properties is valid. commit 1b4815a093807bf078c0f69953d206a6822ddf2f Author: Alan Garny Date: Mon Nov 20 19:57:49 2017 +0100 SimulationExperiment view: select the first graph panel once everything has been fully initialised. commit 769725b03d5befafba2e18b4db457b712f05d862 Author: Alan Garny Date: Mon Nov 20 19:11:56 2017 +0100 PropertyEditor widget: make sure that the value of some of our properties is valid. commit ff82a7616b2f8704baa018bca6d49336825a8d73 Author: Alan Garny Date: Mon Nov 20 17:52:12 2017 +0100 Some minor cleaning up. commit c1569414bc0dc8711e2e8d4f18cf273f220c4da4 Author: Alan Garny Date: Mon Nov 20 17:45:19 2017 +0100 Some minor cleaning up. commit d0a513162a1fb3e3f2665897c6f23b677206d18b Author: Alan Garny Date: Mon Nov 20 16:48:23 2017 +0100 Property editor widget: don'\''t show "???" In the tooltip of a string property when there is no value. commit 24e4773f425a5c25c6ad5745cd1eb8e3af3806c1 Author: Alan Garny Date: Mon Nov 20 14:53:25 2017 +0100 Some minor cleaning up. commit 0bda2d3cb56ea1f7eccf9e6dc5ee3bcf8b83debf Author: Alan Garny Date: Mon Nov 20 13:22:34 2017 +0100 Some minor cleaning up. commit f1769dcb7f1c22f2a4c41c6b035a9ea3e80f1cb0 Author: Alan Garny Date: Thu Nov 16 16:51:28 2017 +0100 Some minor cleaning up. commit a1280cc7a23e2afa10fcbf63595e73290f40a91f Author: Alan Garny Date: Thu Nov 16 13:50:19 2017 +0100 GraphPanel widget: some minor improvements on the way we set titles. commit c4b835006afe6a1ecbc84fa740fc5d98a75313fb Author: Alan Garny Date: Thu Nov 16 11:07:10 2017 +0100 Some minor cleaning up. commit fa94fca1920e0ca2318e8aa273e2404d2ce552c1 Author: Alan Garny Date: Thu Nov 16 10:46:47 2017 +0100 GraphPanel widget: make sure that the legend shows the line and symbols properties (#1171). commit 3008adadae45bdb45bf572f8df241021ade28ce3 Author: Alan Garny Date: Thu Nov 16 09:52:10 2017 +0100 GraphPanel widget: first go at showing the legend (#1171). commit 247f03bc7e172098b503a1d64a4dbc25fda52e00 Author: Alan Garny Date: Thu Nov 16 09:38:17 2017 +0100 GraphPanel widget: first go at showing the legend (#1171). commit f8985570a73e809fd238e52434a6c269e85dc9a7 Author: Alan Garny Date: Thu Nov 16 09:31:00 2017 +0100 SimulationExperiment view: added the '\''legend'\'' property to the graph panel property editor and added SED-ML support for it (#1171). commit 6251e7e34bcb679031c2332752fd5843bafd055a Author: Alan Garny Date: Wed Nov 15 17:55:36 2017 +0100 Some minor cleaning up. commit 9255d39760ab89e5b66e924031f50b665af6d6f6 Author: Alan Garny Date: Wed Nov 15 16:35:46 2017 +0100 SimulationExperiment view: added the '\''legend'\'' property to the graph panel property editor and added SED-ML support for it (#1171). Quite a bit of refactoring too. commit 32491bd6371587bb6b8664517494cb5246e42754 Author: Alan Garny Date: Wed Nov 15 15:56:27 2017 +0100 Some minor cleaning up. commit 60885f7971b174d83a35bdf61b79f2c761b50a80 Merge: 2020fe01a 095bb02a7 Author: Alan Garny Date: Wed Nov 15 15:19:28 2017 +0100 SED-ML support: now track the relative height of a graph panel (closes #1461). commit 095bb02a769ae46fcf9a6bd7a719e5d624d38ae5 Author: Alan Garny Date: Wed Nov 15 14:37:59 2017 +0100 Slight updates to our downloads and what is new pages (#1461). commit a7a0c1103dd0481e255ae642a2f9fa8a04441d4e Author: Alan Garny Date: Wed Nov 15 14:31:47 2017 +0100 SED-ML support: keep track of the relative height of a graph panel (#1461). commit b6a25e01d9a71f38319ec1d0e5185fde180aab88 Author: Alan Garny Date: Wed Nov 15 14:01:46 2017 +0100 Some minor cleaning up. commit 3eef78b063a308165a32c5f7778d06af5fa3c306 Author: Alan Garny Date: Wed Nov 15 13:54:15 2017 +0100 Some minor cleaning up. commit dbcfc92d49b85eea69927cf788e0b39d8c637b67 Author: Alan Garny Date: Wed Nov 15 13:50:34 2017 +0100 Some minor cleaning up. commit 2020fe01a7c502f1e998dcfddfc95f583f1aa128 Merge: 4075e8281 21ca3b3c6 Author: Alan Garny Date: Wed Nov 15 11:57:58 2017 +0100 Simulation Experiment view: can now customise a graph panel (closes #1426). commit 21ca3b3c60033c3f7409a8e926e607bcb3da1c30 Author: Alan Garny Date: Wed Nov 15 11:20:05 2017 +0100 Slight update to our downloads and what is new pages (#1426). commit 99b9d0bc0dff6580efa227a36793ab6a9104e636 Author: Alan Garny Date: Wed Nov 15 11:14:56 2017 +0100 SimulationExperiment view: now have SED-ML support for the zoom region settings (#1426). commit e2f48c48108fea7939d3e95b23f70e587b71a967 Author: Alan Garny Date: Wed Nov 15 10:52:58 2017 +0100 SimulationExperiment view: now have SED-ML support for the X axis and Y axis settings (#1426). commit 52a1a2c98398e40b01d114467662bec51f76fb76 Author: Alan Garny Date: Wed Nov 15 09:39:02 2017 +0100 SimulationExperiment view: now have SED-ML support for the point coordinates settings (#1426). commit 2c45770aaa6513a485bc098f398ddf5b16cd96e8 Author: Alan Garny Date: Wed Nov 15 09:17:13 2017 +0100 Some minor cleaning up. commit ab4da5af68cc6bb45131b1d46cb6a2c7b5cc1683 Author: Alan Garny Date: Wed Nov 15 08:45:47 2017 +0100 Some minor cleaning up. commit 55f6cc3f7fc224a7734348260bc95efce4aff139 Author: Alan Garny Date: Tue Nov 14 19:34:27 2017 +0100 SimulationExperiment view: now have SED-ML support for the grid lines settings (#1426). commit b11756cefbe31b4f5ef4ea03db3d16cf6011292b Author: Alan Garny Date: Tue Nov 14 19:17:51 2017 +0100 SimulationExperiment view: now have SED-ML support for the grid lines settings (#1426). commit 8321aaefe0876a3cb206aa4fa200c8f5112f426d Author: Alan Garny Date: Tue Nov 14 19:17:26 2017 +0100 SED-ML support: some minor refactoring and make sure that a line width is an integer (and not a double) greater than zero (#1426). commit d788febc37abaa6aa3dd9539b643585462184113 Author: Alan Garny Date: Tue Nov 14 18:16:07 2017 +0100 SimulationExperiment view: make sure that our graph panels are properly reinitialised when reloading a SED-ML file (#1426). commit 8082effc794bcad38e9c65d2984f3b427b1d7b14 Author: Alan Garny Date: Tue Nov 14 17:55:42 2017 +0100 GraphPanel widget: improved our removeAllGraphPanels() method (#1426). Indeed, until now, we were removing all the graph panels, but the first one. This was not only arbitrary, but if the graph panel had been customised (e.g., a title had been set), then it means that it would still be there. So, now, we add a graph panel (since we need at least one graph panel) and then really remove all the other graph panels. commit 8c1643a5e96d96162dd0c096d8c4742ec6febbd1 Author: Alan Garny Date: Tue Nov 14 17:07:28 2017 +0100 GraphPanel widget: retrieve some memory when possible. commit a3430e8bb334a2403f6c61b36f783b7b023c18bd Author: Alan Garny Date: Tue Nov 14 16:31:49 2017 +0100 Some minor cleaning up. commit 62c9007facb5527544e1447e22ce3cc35f54d036 Author: Alan Garny Date: Tue Nov 14 15:24:06 2017 +0100 SimulationExperiment view: now have SED-ML support for the title (#1426). commit b6c96df1dbbf9c2d67e944e341ee8b4e6704e2fa Author: Alan Garny Date: Tue Nov 14 15:23:24 2017 +0100 Make sure that the GUI is up-to-date after executing a message box. commit 8c4a48420f512fb3d01d97ac48a34bf00c0fbbac Author: Alan Garny Date: Tue Nov 14 14:56:19 2017 +0100 SimulationExperiment view: now have SED-ML support for the font size (#1426). commit 2a4567d015c1644131366a0f156ac5a077b658c9 Author: Alan Garny Date: Tue Nov 14 14:26:52 2017 +0100 GraphPanel widget: improved our addition/removal of graph panels (#1426). commit 27de164f4fab655ac3d53444ce7de88e36e29140 Author: Alan Garny Date: Tue Nov 14 10:44:42 2017 +0100 Some minor cleaning up. commit efce4284ee250b34cffe6e52032be9464045d076 Author: Alan Garny Date: Mon Nov 13 18:43:46 2017 +0100 GraphPanel widget: make sure that our graph panels are properly aligned (#1426). Indeed, if we had one graph panel, added a title to its Y axis, added another graph panel and also wanted to add a title to its Y axis, then only the Y axis title of the first graph panel would be visible. That is, until we would, say, pan the second graph panel. This was because the QwtScaleWidget for the Y axis of the second graph panel didn’t have its internals updated. To ‘fix’ this, we have to subclass QwtScaleWidget, so that we could call its layoutScale() method… commit 57aacb01716f5257f950f53122a931b3fb109147 Author: Alan Garny Date: Mon Nov 13 17:43:40 2017 +0100 Some minor cleaning up. commit c391c7e40312b0ce3212898bc1f872ff5a663bbd Author: Alan Garny Date: Mon Nov 13 17:40:42 2017 +0100 Some minor cleaning up. commit 9c3eec2b6fee47c1b93cf6d7d1a5a7a8a2668810 Author: Alan Garny Date: Mon Nov 13 14:56:47 2017 +0100 GraphPanel widget: make sure that we are properly aligned when adding a graph panel when another has a Y title (#1426). commit e38ac8a642adb1ff813379873c7949f5b2bdbd54 Author: Alan Garny Date: Mon Nov 13 13:26:23 2017 +0100 Some minor cleaning up. commit 2168d8273fb4f7ba516515b3af5670caa7958a9d Author: Alan Garny Date: Sun Nov 12 13:10:44 2017 +0100 Slight update to our what is new page (#1426). commit 442ffbe9b0d46045fd6a6572366e883e1aaaf6dd Author: Alan Garny Date: Sun Nov 12 13:06:57 2017 +0100 SimulationExperiment view: make sure that all our graph panels get the correct height when adding a graph panel or opening a SED-ML file with several graph panels (#1426). commit b48d6df5f77704f5ed183adbb4ad86cb4f59d556 Merge: fa0b5ae35 4075e8281 Author: Alan Garny Date: Sat Nov 11 15:59:28 2017 +0100 Merge branch '\''master'\'' into issue1426. commit 4075e8281fcceef9a56146beeab17011bfaaa32b Author: Alan Garny Date: Sat Nov 11 15:58:18 2017 +0100 Slight update to our prerequisites page. commit fa0b5ae3561ce2028870c14c38a5cc5ce2eb4c52 Author: Alan Garny Date: Fri Nov 10 18:34:53 2017 +0100 SimulationExperiment view: make sure that all our graph panels get properly initialised when opening a SED-ML file / COMBINE archive (#1426). commit 5877d1f25031bee3c6bfedc0f6a32d68a27be2be Author: Alan Garny Date: Fri Nov 10 18:31:15 2017 +0100 SimulationExperiment view: better handle the further initialisation of our view due to a SED-ML file (#1426). commit f1f84627745e8b9d3184567ec09dbcb5ba3a495d Author: Alan Garny Date: Fri Nov 10 17:55:10 2017 +0100 SimulationExperiment view: now have SED-ML support for the foreground colour (#1426). commit 07f8e0ff7e413825dd27ec87a4d15bcaa907d727 Author: Alan Garny Date: Fri Nov 10 17:49:19 2017 +0100 SimulationExperiment view: now have SED-ML support for the background colour (#1426). commit 2c5250572fb0f229a4919c70e29d4837c337aee0 Author: Alan Garny Date: Fri Nov 10 17:13:01 2017 +0100 Some minor cleaning up. commit ce944a6f6365a939451a8d3651302e34f04a652e Author: Alan Garny Date: Fri Nov 10 16:24:50 2017 +0100 Some minor cleaning up. commit b166b8a127818d4a1b07107ee42120f59dcd3f47 Author: Alan Garny Date: Fri Nov 10 13:24:25 2017 +0100 SimulationExperiment view: put back a graph panel'\''s log scale information (#1426). I thought I could get away with putting that information as annotation, but SED-ML explicitly requires it to be at the curve level… commit 2b31bed573d808a75b834123537fcf2b914f902b Author: Alan Garny Date: Fri Nov 10 12:55:11 2017 +0100 Some minor cleaning up. commit 4861604d85c8a1f30e2f0b21a2cd73651883da78 Author: Alan Garny Date: Fri Nov 10 11:58:19 2017 +0100 Some minor cleaning up. commit 65002f0c551cfb0cd31fdc100b9e9e37c06d8488 Author: Alan Garny Date: Fri Nov 10 11:50:29 2017 +0100 SimulationExperiment view: export all graph panels, even if they don'\''t contain graphs (#1426). commit b7e12d35777d2d28623c5608073c18b032a6f318 Author: Alan Garny Date: Fri Nov 10 11:37:28 2017 +0100 SimulationExperiment view: export all graph panels, even if they don'\''t contain graphs (#1426). commit ac428fa53a988f76e9a9e319086a0879c7362358 Author: Alan Garny Date: Fri Nov 10 10:40:18 2017 +0100 Some minor cleaning up. commit 0260eed7d3ec2e310ff9e9df20fb789bb434666f Author: Alan Garny Date: Fri Nov 10 10:10:48 2017 +0100 Some minor cleaning up. commit 713983a5cac038a7156909a87147dbc0963e2988 Author: Alan Garny Date: Fri Nov 10 10:10:34 2017 +0100 SimulationExperiment view: make sure that the expanded/collapsed state of all graph panel editor'\''s sections remains the same when switching to another graph panel or file (#1426). commit 4e8e457c3ef17fc9c67e3b3d4d7ec6dee20f8ac7 Author: Alan Garny Date: Fri Nov 10 09:57:18 2017 +0100 Some minor cleaning up. We don’t keep track of the horizontal bar value for our other property editors, so why would we do it here?… commit 28381aafff67f0ad60c6dc686f029a9105933b06 Author: Alan Garny Date: Fri Nov 10 09:23:33 2017 +0100 Changed the encoding back to UTF-8 (stupid Windows application!). commit 86a71e891e2e0fd71dc35c661d55c5eca45a355d Author: Alan Garny Date: Fri Nov 10 09:16:10 2017 +0100 Some minor cleaning up. commit aeb0b3ad953fc1000137234414afb7497669f1f4 Author: Alan Garny Date: Fri Nov 10 09:09:22 2017 +0100 Some minor cleaning up. commit c031544e89240f5eed551f2c18f83b4fdd825493 Author: Alan Garny Date: Thu Nov 9 17:44:11 2017 +0100 SimulationExperiment view: update our French translations (#1426). commit 28c7d540b54dadbe614c7f8f843fe9d51039a3db Author: Alan Garny Date: Thu Nov 9 17:35:15 2017 +0100 SimulationExperiment view: update our French translations (#1426). commit 22a648554142730088f02180325b629fe47e9443 Author: Alan Garny Date: Thu Nov 9 17:20:54 2017 +0100 Some minor cleaning up. commit 26ce931368419ffe84de904510fd6fe4b5c09bc2 Author: Alan Garny Date: Thu Nov 9 17:00:07 2017 +0100 SimulationExperiment view: can now specify the zoom region settings to be used by a graph panel (#1426). commit 451fe8812bba8e426bd96110bae5575e1e49f37c Author: Alan Garny Date: Thu Nov 9 16:03:19 2017 +0100 SimulationExperiment view: can now specify the point coordinates settings to be used by a graph panel (#1426). commit b14372628bc73da26f689d428178fcc1b7b87e5a Author: Alan Garny Date: Thu Nov 9 15:25:01 2017 +0100 Some minor cleaning up. commit 1f33982ecf2f1e9603eaa002ec8cbea35d9cfb9a Author: Alan Garny Date: Thu Nov 9 15:24:25 2017 +0100 Some minor cleaning up and refactoring. commit c79d8689f526f89e990ca7f5da54f75d0b97a98f Author: Alan Garny Date: Thu Nov 9 15:20:01 2017 +0100 SimulationExperiment view: can now specify the point coordinates settings to be used by a graph panel (#1426). Still need to get the coordinates label in the right position with regards to the horizontal and vertical lines highlighting the point for which we want to show the coordinates. commit 0886b8f2bf074eb1d7933a860e329ca02b00c3cd Author: Alan Garny Date: Thu Nov 9 15:03:46 2017 +0100 SimulationExperiment view: use an integer for sizes/widths rather than a double (#1426). This will make things easier for showing the coordinates of a point / zoom regions. commit 5fa98a0b8328207478f6250a2242fefd8266b466 Author: Alan Garny Date: Thu Nov 9 13:33:01 2017 +0100 Some minor cleaning up. commit f18a4a51f455c73d8a71f26b4e69767920443b74 Author: Alan Garny Date: Thu Nov 9 11:55:53 2017 +0100 SimulationExperiment view: can now specify the grid lines settings to be used by a graph panel (#1426). commit 16c8d55d38f5a5386d1ffdd503b879f892f56ecd Author: Alan Garny Date: Thu Nov 9 11:32:36 2017 +0100 GraphPanel widget: slight improvements to our setting of the background colour (#1426). commit 96375607cd918b43589347409673b41064cf9246 Author: Alan Garny Date: Thu Nov 9 10:54:20 2017 +0100 Some minor cleaning up. commit f60fa4646e1152d9739cc2916f915ef0f7e63928 Author: Alan Garny Date: Thu Nov 9 09:58:45 2017 +0100 GraphPanel widget: account for the Y axis title when aligning a graph panel with its neighbours (#1426). commit b3bfc01fe847998163e45a2eeea87e3d8b7d0cd8 Author: Alan Garny Date: Wed Nov 8 19:49:51 2017 +0100 SimulationExperiment view: can now specify the foreground colour to be used by a graph panel (#1426). commit e2b83b3e8e742c022c0b57c5239e6f6180ae83cc Author: Alan Garny Date: Wed Nov 8 18:59:20 2017 +0100 SimulationExperiment view: can now specify a title for a graph panel'\''s axes (#1426). commit 3fafe746434368dfb136f17fdcdfb9766853a0d7 Author: Alan Garny Date: Wed Nov 8 16:58:21 2017 +0100 SimulationExperiment view: can now specify a title for a graph panel (#1426). commit 1ac8a8f17fbf05afd01e502ca262ec33d1360777 Author: Alan Garny Date: Wed Nov 8 16:40:44 2017 +0100 SimulationExperiment view: remove the visible property for our grid lines (#1426). commit 4a5069930f8da272677a1ce45651cee2b8c50d9d Author: Alan Garny Date: Wed Nov 8 16:36:06 2017 +0100 SimulationExperiment view: renamed "Colour" to "Background colour" for our graph panel settings (#1426). commit ad44257cfea057de99b657cb5f8cc7c3bc704cc8 Author: Alan Garny Date: Wed Nov 8 16:26:22 2017 +0100 SimulationExperiment view: give more importance to our parameters widget than to our graph panel / graphs widget (#1426). As a nice side effect, to set stretch factors for our parameters and graph panel / graphs widgets prevents the the vertical scrollbar of our graph panel / graphs widget from quickly flashing the first time we switch files (probably a Qt-related issue)… commit 77c9d9d456f4cafa19b221c482936ea220d7d2d6 Author: Alan Garny Date: Wed Nov 8 16:20:01 2017 +0100 SimulationExperiment view: give more importance to our parameters widget than to our graph panel / graphs widget (#1426). As a nice side effect, to set stretch factors for our parameters and graph panel / graphs widgets prevents the the vertical scrollbar of our graph panel / graphs widget from quickly flashing the first time we switch files (probably a Qt-related issue)… commit 4c31edab0a84f8fdf9580987460594b9c0d41595 Author: Alan Garny Date: Wed Nov 8 15:33:59 2017 +0100 Some minor cleaning up. commit c860162562715b5e454a57a02113fa000906cec4 Author: Alan Garny Date: Wed Nov 8 14:50:14 2017 +0100 Some minor cleaning up. commit 43d24bc68507f9ad2b2b5acfe7c03d25e27d294f Author: Alan Garny Date: Wed Nov 8 14:16:49 2017 +0100 SimulationExperiment view: make sure that all our solvers'\'' properties are properly translated, and that all of our parameters get properly updated (#1426). commit 68634ee2aececf2905a8179d1585d6586d5f199d Author: Alan Garny Date: Wed Nov 8 14:15:28 2017 +0100 Some minor cleaning up. commit 8ba2a5da406bdee8a34937771c4075bbecc7438b Author: Alan Garny Date: Wed Nov 8 13:38:15 2017 +0100 Some minor cleaning up. commit 2e4a9d171ea40e8d5a059ab95dbd1c2317167a60 Author: Alan Garny Date: Wed Nov 8 11:54:13 2017 +0100 SimulationExperiment view: make sure that the labels of a new graph panel editor are initialised (#1426). Not a problem for the very first graph panel editor (since we call retranslateUi() in the constructor), but definitely one if we add a new graph panel. commit bec99cf43c205bfd350e1dd3949130340ff454af Author: Alan Garny Date: Wed Nov 8 11:52:28 2017 +0100 Some minor cleaning up. commit 704c53c4084972ace12abb703df639a554b4ee4d Author: Alan Garny Date: Tue Nov 7 18:06:31 2017 +0100 SimulationExperiment view: improved our setting of property editors'\'' column widths. commit e8480dda1c4301d4c5681e0890823f50f137c046 Author: Alan Garny Date: Tue Nov 7 18:05:46 2017 +0100 Some minor cleaning up. commit 9c02444ae16be1725dda0b4de113e007834fae80 Author: Alan Garny Date: Tue Nov 7 18:05:27 2017 +0100 Some minor cleaning up. commit 47221d9d59e771576c7f84c388457fb1b5afe02d Author: Alan Garny Date: Tue Nov 7 17:06:42 2017 +0100 Some minor cleaning up. commit fc540c36a37d24bd2a8dc329a3bfd0c118b36b14 Author: Alan Garny Date: Tue Nov 7 17:03:18 2017 +0100 SimulationExperiment view: improved our setting of property editors'\'' column widths. commit 961d859067f6c7737c24c53607c24a5bcecfe4c4 Author: Alan Garny Date: Tue Nov 7 16:48:38 2017 +0100 Some minor cleaning up. commit 6d643cdfacef6abb000ee8a7a82f0270b4787435 Author: Alan Garny Date: Tue Nov 7 16:48:25 2017 +0100 PropertyEditor widget: make sure that we are double clicking on a property before trying to change its colour value (#1426). commit 9610d7b1b909ff2604b21b7ebd539ff0de98dcf7 Author: Alan Garny Date: Tue Nov 7 16:47:19 2017 +0100 Some minor cleaning up. commit f91776930105d901e855656d8cee28ac318c856f Author: Alan Garny Date: Tue Nov 7 16:25:25 2017 +0100 Some minor cleaning up. commit 7a090a2af2c769d8ba2ea89e51dbcc8704624aa8 Author: Alan Garny Date: Tue Nov 7 15:58:26 2017 +0100 Some minor cleaning up. commit bd76da0401c5faa9ab0da9a3a81fcbf58069dcee Author: Alan Garny Date: Tue Nov 7 15:34:29 2017 +0100 GraphPanel widget: also change the colour of the background surrounding the canvas (#1426). commit 9042bc58b935ba60d2ab961eed341be2b61f4a5a Author: Alan Garny Date: Tue Nov 7 15:08:17 2017 +0100 GraphPanel widget: also change the colour of the background surrounding the canvas (#1426). commit 8da22f8dc008b035a4b6047ff4a74dd7468598d0 Author: Alan Garny Date: Tue Nov 7 15:06:17 2017 +0100 Some minor cleaning up. commit 8e30dbebedf548be631d1a864ac5571d7db60733 Author: Alan Garny Date: Tue Nov 7 14:33:12 2017 +0100 Reverting commit 66250bb. This was a bad move since we use the parent of a CommonWidget object when showing a busy widget. In other words, the parent gets disabled, which can be problematic if we use the ‘wrong’ parent. This is what happened with our CellML Annotation view. After commit 66250bb, as soon as we would type one character in the Term field, the busy widget would kick in and the whole OpenCOR application would be disabled. In other words, after entering one character, we had to wait for the ontological terms to be retrieved. Not great at all! commit bcacadcd9fc09dfe144f76016f21ce015dcae568 Author: Alan Garny Date: Mon Nov 6 18:46:14 2017 +0100 SimulationExperiment view: make sure that our graph panel gets properly replotted when changing some of its properties (#1426). Indeed, if we were to pan the Y axis (so that it would now range from, say, -10 to 990) and increase the font size, then everything would be fine. However, if we were to reset the font size to its original value, then we would get a ‘big’ gap to the left of the Y axis labels. commit ed3d454d1c04ab6691b49b574014d15dc5d644a0 Author: Alan Garny Date: Mon Nov 6 18:32:48 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours (#1426). commit 619cb7dfdc497530b4da0849b400e5c3a777df3a Author: Alan Garny Date: Mon Nov 6 18:32:11 2017 +0100 Some minor cleaning up. commit be9ce35fcbd6cc0f878926511384d3f6efabd3dd Author: Alan Garny Date: Mon Nov 6 16:47:09 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours (#1426). commit 8c1382a3addb8bece5eba2b1adff0ced2dc192c4 Author: Alan Garny Date: Mon Nov 6 16:41:24 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours (#1426). commit db5b4a87567882a9b7a1d58996f6c9457467edbb Author: Alan Garny Date: Mon Nov 6 15:17:54 2017 +0100 PropertyEditor widget: make sure that we get the focus back straightaway when changing a colour property. commit eb72e9c123dc5295d3c44ec070414d500ef5a2ba Author: Alan Garny Date: Mon Nov 6 14:08:10 2017 +0100 Some minor cleaning up. commit b8b74eea2e5963c32cafcd6400f3a830abb8dcc2 Author: Alan Garny Date: Mon Nov 6 13:32:03 2017 +0100 SimulationExperiment view: make sure that our graph panel gets properly replotted when changing some of its properties (#1426). Indeed, if we were to pan the Y axis (so that it would now range from, say, -10 to 990) and increase the font size, then everything would be fine. However, if we were to reset the font size to its original value, then we would get a ‘big’ gap to the left of the Y axis labels. commit c299a3b2ae2d5405d91942e7b3eb9b794db3c1ed Merge: 6d3fad8d7 e13916523 Author: David Brooks Date: Mon Nov 6 19:49:32 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 6d3fad8d7cfa778c63a1d9f9474c5d636ae05912 Author: David Brooks Date: Mon Nov 6 19:46:14 2017 +1300 Python: bundle lxml package (version 4.1.1). commit a8aa8228611d83da37e941c1e4d70a5b1b37129f Author: David Brooks Date: Mon Nov 6 19:45:41 2017 +1300 Python: upgrade matplotlib to v2.1.0. commit 4a9bfc9eb073ec69aff14e43b2adb0c8b7d4b851 Author: David Brooks Date: Mon Nov 6 19:41:57 2017 +1300 Python: upgrade numpy to v1.13.3. commit c8f985dac5a5dcc72028270d14269db7f64f44b4 Author: David Brooks Date: Mon Nov 6 19:35:43 2017 +1300 SUNDIALS: upgraded to version 3.0.0 (#1453). commit 35b0bbd4eb0eeee8a37ebaacd57cd7e20bb5e6a6 Merge: df47d90e2 616824956 Author: David Brooks Date: Sun Nov 5 10:09:32 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit c0a8ec92206158bcf2f3e9dc2b2524b1d920a312 Merge: ec13b4f65 e13916523 Author: Alan Garny Date: Sat Nov 4 13:51:44 2017 +0100 Merge branch '\''master'\'' into issue1426. commit e139165233ade2b421102f573c98a5ddcc242720 Merge: 2480afc7f 0345eb6e2 Author: Alan Garny Date: Sat Nov 4 13:50:12 2017 +0100 Make sure that we take advantage of clcache, if it is installed. commit 0345eb6e2fdc5a4ddda88591bc4aa7f6c61a3429 Author: Alan Garny Date: Sat Nov 4 13:08:08 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. Although clcache doesn'\''t currently support the /Zi comiler option, it does actually support the /Z7 one (since that option doesn'\''t generate .PDB files, which is the reason clcache doesn'\''t currently support the /Zi compiler option). commit 686eb75da9753c975d9f8e6fb9b2ca589d936dae Author: Alan Garny Date: Sat Nov 4 11:24:58 2017 +0100 Make sure that CMake doesn'\''t force us to use the compilation flags it wants us to use. commit 41dca11a9f3bd1d35c0e72eac81ab5d41b7223f2 Author: Alan Garny Date: Sat Nov 4 10:41:40 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 2889808fd6b9c6cc8762a9a9abd568faa87fe0ea Author: Alan Garny Date: Fri Nov 3 20:33:58 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 146caa169cb454d08dba605a541f7bb3020ee3d4 Author: Alan Garny Date: Fri Nov 3 17:16:26 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 32cc3bcd981622a9a9a55fae84c7e6f449274423 Author: Alan Garny Date: Fri Nov 3 17:12:03 2017 +0100 Make sure that our runpath2rpath program gets compiled with full optimisations. commit 1ae3f62b0fb854d0e76aeadc52636993c63c77bc Author: Alan Garny Date: Fri Nov 3 17:11:31 2017 +0100 Some minor cleaning up. commit ec13b4f65f79a325c99009d7b2931dea7e1c39b0 Merge: 62b9d45bc 2480afc7f Author: Alan Garny Date: Fri Nov 3 11:19:27 2017 +0100 Merge branch '\''master'\'' into issue1426. commit 2480afc7fa9092e1eeab3fb3f75e11deba0aa398 Merge: a2e638fa2 eac682d1a Author: Alan Garny Date: Fri Nov 3 11:18:44 2017 +0100 OpenSSL: upgraded to version 1.0.2m (closes #1458). commit eac682d1aeed11483865d7807ccc61d9023c0f77 Author: Alan Garny Date: Fri Nov 3 10:40:44 2017 +0100 Slight updates to our third-party libraries and downloads pages (#1458). commit 3341076f27e267eb816e88bb8f4bccb9c59810c2 Author: Alan Garny Date: Fri Nov 3 10:36:33 2017 +0100 OpenSSL package: don'\''t build OpenSSL anymore (#1458). commit 7a83cf65e392e0a1d889efd9246488c07622ce0e Author: Alan Garny Date: Fri Nov 3 10:35:33 2017 +0100 OpenSSL package: built OpenSSL 1.0.2m on Windows, Linux and macOS (#1458). commit 4ac6bebbaf6243d47ca916b7b28ec09103f2609b Author: Alan Garny Date: Fri Nov 3 10:02:24 2017 +0100 OpenSSL package: getting ready to build OpenSSL 1.0.2m (#1458). commit 62b9d45bceb30eaef21cfe49c0456200553857f2 Merge: fe878172e a2e638fa2 Author: Alan Garny Date: Fri Nov 3 08:37:05 2017 +0100 Merge branch '\''master'\'' into issue1426. commit a2e638fa24902f9b7f5878ab819c0fa36ac8f713 Author: Alan Garny Date: Fri Nov 3 08:35:58 2017 +0100 CMake: enforce the use of Qt 5.9.2 LTS. commit fe878172e670d90f7a81e29a8f00fecc1a4b73d6 Author: Alan Garny Date: Thu Nov 2 18:09:01 2017 +0100 SimulationExperiment view: make sure that a model could be compiled before setting the current widget to our graph panel or graphs property editor (#1426). commit 1bddb1eab91a108d636ec46efec7fb9fbe40ea69 Author: Alan Garny Date: Thu Nov 2 17:57:15 2017 +0100 PropertyEditor widget: can now initialise the selection of a colour by double clicking on a colour icon. commit e1ba0851c32097e624be72bb4a194de382accb3e Author: Alan Garny Date: Thu Nov 2 17:38:18 2017 +0100 Removed our test code. commit 64343bea8a9c3bac02fb455e57bef195b2ccd846 Author: Alan Garny Date: Thu Nov 2 16:50:30 2017 +0100 Some minor cleaning up. commit 494cb3b6b7feefd487585c1972fdef269bb5169d Author: Alan Garny Date: Thu Nov 2 16:06:39 2017 +0100 Just for testing... commit 58e31b26f7ec1bea09e442f5dabe25fdab132fe6 Author: Alan Garny Date: Thu Nov 2 16:03:50 2017 +0100 Some minor cleaning up. commit 1b56c60491ab40915831ecdf6a8eb054c6a16c54 Author: Alan Garny Date: Thu Nov 2 14:34:52 2017 +0100 PropertyEditor widget: can now initialise the selection of a colour by double clicking on/near a colour icon. commit 92936693d663cd167cd340a73a4c2fdf40cdb7fa Author: Alan Garny Date: Thu Nov 2 13:45:19 2017 +0100 Some minor cleaning up. commit ab84acb57885003c04de5fbf44f3834280c02c3b Merge: 2ad510613 f5750edc8 Author: Alan Garny Date: Thu Nov 2 12:40:09 2017 +0100 Merge branch '\''master'\'' into issue1426. commit f5750edc8663d220fa268f7bb1e4013104299747 Merge: 616824956 e977c4170 Author: Alan Garny Date: Thu Nov 2 12:39:13 2017 +0100 Renamed our GitHub repository from opencor/qtwebkitreloaded to opencor/qtwebkit. commit e977c4170b31a2aa295c07a6c3be062709773655 Author: Alan Garny Date: Thu Nov 2 11:35:25 2017 +0100 Renamed our GitHub repository from opencor/qtwebkitreloaded to opencor/qtwebkit. I had completely overlooked the fact that there is an official Qt mirror on GitHub. commit 2ad510613bde0fb27988707c214560011dcd9774 Merge: 9acad7066 616824956 Author: Alan Garny Date: Thu Nov 2 09:34:36 2017 +0100 Merge branch '\''master'\'' into issue1426. commit 616824956a904fe7e4fa986457b2e9ac8d5ce3a1 Author: Alan Garny Date: Thu Nov 2 09:33:54 2017 +0100 Slight update to our prerequisites page [ci skip]. commit 9acad7066f4aa3d39df7307fe450c384b9c9601f Merge: aa407bc62 f3a18e7ba Author: Alan Garny Date: Tue Oct 31 23:52:15 2017 +0100 Merge branch '\''master'\'' into issue1426 commit f3a18e7ba0bd039222d9749b454e1998c04e8ff0 Author: Alan Garny Date: Tue Oct 31 23:51:05 2017 +0100 Some minor cleaning up [ci skip]. commit aa407bc626d161d97ab56f8eb54609387ac49412 Merge: c4ddb2f9b c3111be16 Author: Alan Garny Date: Tue Oct 31 18:41:21 2017 +0100 Merge branch '\''master'\'' into issue1426. commit c3111be16bf329a03087d45d1dde3b3b228b5c92 Author: Alan Garny Date: Tue Oct 31 18:39:57 2017 +0100 Slight changes to our prerequisites page [ci skip]. commit c4ddb2f9b7c7bb2674ff36330c7edfd6ec12d9bc Merge: 8322779bf bc6f907b0 Author: Alan Garny Date: Tue Oct 31 15:17:46 2017 +0100 Merge branch '\''master'\'' into issue1426. commit bc6f907b02ca1d4532099947312cd54caea3ee83 Author: Alan Garny Date: Tue Oct 31 14:45:23 2017 +0100 Travis CI: some minor cleaning up. commit 8322779bf24537899c7d77613c1609fb245934f6 Author: Alan Garny Date: Tue Oct 31 14:15:20 2017 +0100 PropertyEditor widget: fixed a small problem with the icon we generate for a colour property. commit 0f3ffe1fb77d193c7b69c957fac70a4f8a6653af Author: Alan Garny Date: Tue Oct 31 14:12:48 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor (#1426). commit a2b6b4740d85575107982abafac18e5a3453ff05 Author: Alan Garny Date: Tue Oct 31 10:41:14 2017 +0100 Some minor cleaning up. commit b9f19df6d057397c0555173ec13cf9e75d42dad3 Author: Alan Garny Date: Tue Oct 31 10:27:20 2017 +0100 Some minor cleaning up. commit 46dac2bd791ca02c2c17a251a87afec228680c2c Author: Alan Garny Date: Tue Oct 31 10:26:49 2017 +0100 SimulationExperiment view: can now select a colour using the graph panel context menu (#1426). commit 3281c6ce9fda7d83bd39fff92755210729fab587 Author: Alan Garny Date: Tue Oct 31 09:41:41 2017 +0100 SimulationExperiment view: some minor refactoring (#1426). commit 2a8c3431344db4a972b41a98aa7e33df157ca53f Author: Alan Garny Date: Mon Oct 30 19:18:59 2017 +0100 SimulationExperiment view: don’t use a signal to let people a graph settings have been changed, but replot the graph’s plot straightaway instead. commit 2eefc317b7f334f4cbaf794aac6153ec016fd6c1 Author: Alan Garny Date: Mon Oct 30 19:05:48 2017 +0100 SimulationExperiment view: can now modify the colour, font size and axes’ scale of a graph panel (#1426). commit 1e068d499e31313b4ab3e46066d0f829526d3912 Author: Alan Garny Date: Mon Oct 30 17:25:01 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor (#1426). commit 7832e0d279c833a9461417541aea0a7f7e47d644 Author: Alan Garny Date: Mon Oct 30 17:12:40 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor (#1426). commit fe2dffe34a703db969b86ffbaba6c5b54378ec3d Author: Alan Garny Date: Mon Oct 30 16:42:03 2017 +0100 PropertyEditor widget: distinguish between all and root properties. commit 03e2d76b7ca9afe660ecfad93f96f4f0fd62c14b Author: Alan Garny Date: Mon Oct 30 15:35:29 2017 +0100 Some minor cleaning up. commit 5cf713aa5a81c73d9fc722245f7fe9efd3683977 Merge: 9063ba1c2 4e517832b Author: Alan Garny Date: Mon Oct 30 12:47:04 2017 +0100 Merge branch '\''master'\'' into issue1426. commit 4e517832b996210ff7aa8122f480c39cf2d33347 Merge: f91bca71e af12f7635 Author: Alan Garny Date: Mon Oct 30 12:45:25 2017 +0100 Updated our copy of QtSingleApplication. commit af12f76357066e68190ffdd82dd37bb5b731ab18 Author: Alan Garny Date: Mon Oct 30 11:47:00 2017 +0100 Travis CI: upgraded to Qt 5.9.2 LTS on Linux. commit 511b48a76b97a5552d5ebdd45cab68909b9979a3 Author: Alan Garny Date: Mon Oct 30 11:21:56 2017 +0100 CMake: make sure that UNICODE is defined. commit f6c3fd44b8b186ac9230a877b745a74cf1628dc8 Author: Alan Garny Date: Mon Oct 30 11:13:31 2017 +0100 QtSingleApplication: some minor cleaning up. commit 9063ba1c256425a88d4d40812b4843f1c94f1006 Merge: 10ba9b38d f91bca71e Author: Alan Garny Date: Mon Oct 30 10:50:59 2017 +0100 Merge branch '\''master'\'' into issue1426. commit f91bca71e7dea51228c90c3b118dede8bce8134f Author: Alan Garny Date: Mon Oct 30 10:49:54 2017 +0100 Slight update to our third-party libraries page [ci skip]. commit 10ba9b38dc3898beea4a0661afa1b3b4a928e44a Author: Alan Garny Date: Sun Oct 29 16:56:30 2017 +0100 SimulationExperiment view: removed the "Logarithmic X Axis" and "Logarithmic Y Axis" menu items from a graph panel'\''s context menu (#1426). commit ad2825c81b8ffdec50df36d144fee6bca0b38208 Author: Alan Garny Date: Sun Oct 29 16:11:34 2017 +0100 SimulationExperiment view: can now select and show our graph panel or graphs settings from a graph panel’s context menu (#1426). commit 89455872118df246b325e3bc5ccf40b89f0e358a Author: Alan Garny Date: Sun Oct 29 15:35:15 2017 +0100 Some minor cleaning up. commit df9da73b82b0d4184da1ceef7e7a98a64f3d840d Author: Alan Garny Date: Sun Oct 29 13:01:08 2017 +0100 SimulationExperiment view: added some menu items to get access to our Graph Panel and Graphs settings (#1426). commit 0fe40bab1e56053f107e73e58b63a5ecd69f3202 Author: Alan Garny Date: Sun Oct 29 11:51:29 2017 +0100 SimulationExperiment view: added some menu items to get access to our Graph Panel and Graphs settings (#1426). commit 9d9eb91e207629043021df18b2379537f1ede139 Author: Alan Garny Date: Sun Oct 29 11:09:26 2017 +0100 Some minor cleaning up. commit 2f5cc3176244c26720a2dd41191ac3188bfdeb50 Author: Alan Garny Date: Sun Oct 29 11:06:54 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor (#1426). commit d283369dcc9c127f7496616b45a01772468af346 Author: Alan Garny Date: Sun Oct 29 11:01:05 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor (#1426). commit c6b8efc32ec40e7950e262fc4bcecf400de6de3f Author: Alan Garny Date: Sun Oct 29 10:44:52 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor (#1426). commit 34ce446dff3328051b724609032f5d0748197867 Author: Alan Garny Date: Sat Oct 28 19:04:57 2017 +0200 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor (#1426). commit c84b08ca25092013997bd4dafe95f57e939e9b3c Author: Alan Garny Date: Sat Oct 28 11:40:17 2017 +0200 SimulationExperiment view: some work on distinguishing our (future) graph panel property editor from our (existing) graphs property editor (#1426). commit e01002596ae979c3860d4a2dce01615a20dd77ae Author: Alan Garny Date: Sat Oct 28 11:15:37 2017 +0200 SimulationExperiment view: removed the shell of a graph panel and graphs specific property editor (#1426). Indeed, refactoring the Graphs property editor was proving to be too tedious, not to mention that this meant several instances of our context menu, etc. one for each graph panel. So, not optimal at all. commit baf26726252b42d2618d21d2260156e789e7ccc9 Author: Alan Garny Date: Fri Oct 27 19:24:24 2017 +0200 SimulationExperiment view: added the shell of a graph panel and graphs specific property editor (#1426). commit e083d8a7e5a5d189a9c95b53639986d57cdf98b0 Author: Alan Garny Date: Fri Oct 27 19:23:11 2017 +0200 SimulationExperiment view: added the shell of a graph panel and graphs specific property editor (#1426). commit 6e0119f24f9d819a577e2995ed5dd4e258bea9d0 Author: Alan Garny Date: Fri Oct 27 19:05:59 2017 +0200 Some minor cleaning up. commit 66250bb8c3e29d1cc072e3058cd74d95badfa754 Author: Alan Garny Date: Fri Oct 27 18:59:15 2017 +0200 Some minor cleaning up. commit 1457fb644855a6edb62710e9f75fc5d3eb290863 Merge: 33bc3acd0 bfb19e8e5 Author: Alan Garny Date: Fri Oct 27 18:19:07 2017 +0200 Merge branch '\''master'\'' into issue1426. commit bfb19e8e55d9a6b2510d54d458333d49e1ac6ec6 Merge: 3227b22b1 c887ef82c Author: Alan Garny Date: Fri Oct 27 18:17:52 2017 +0200 SUNDIALS: upgraded to version 3.0.0 (closes #1453). commit c887ef82cbcb0fa5e39b1348e777b7bb7bbe2457 Author: Alan Garny Date: Fri Oct 27 17:20:47 2017 +0200 Some minor cleaning up. commit 90cc7fe6e8eb27caab102f6fb50383347fdafd79 Author: Alan Garny Date: Fri Oct 27 17:20:34 2017 +0200 Slight update to our downloads page (#1453). commit 43d9a140941deaab0d5afd2b3cbf5e5f25809a16 Author: Alan Garny Date: Fri Oct 27 17:20:16 2017 +0200 SUNDIALS package: generated the package on Windows (#1453). commit 5fa41f300cd0d229ca2197435b362b69792e4321 Author: Alan Garny Date: Fri Oct 27 17:05:02 2017 +0200 SUNDIALS package: generated the package on Linux (#1453). commit d226180251d94fe59e58d50fbd2fdc9880a93cb1 Author: Alan Garny Date: Fri Oct 27 16:59:54 2017 +0200 SUNDIALS package: generated the package on macOS (#1453). commit 93777607879c0272333bc96f2f3c234ddb47d543 Author: Alan Garny Date: Fri Oct 27 16:59:15 2017 +0200 Getting ready to build the SUNDIALS package (#1453). commit f9e07174d89394440f363144684f27baf79a9d23 Author: Alan Garny Date: Fri Oct 27 16:58:24 2017 +0200 Updated our SUNDIALS-based solvers (#1453). commit 533642541c94c8783228505588a882bd39c4a9ed Author: Alan Garny Date: Fri Oct 27 14:14:17 2017 +0200 Getting ready to build the SUNDIALS package (#1453). commit 33bc3acd0b8f2f80e5005f46871a6e5fab6b2a79 Author: Alan Garny Date: Fri Oct 27 12:59:57 2017 +0200 Some minor cleaning up. commit ae070c8150588a2837ddc7e05763734698784359 Author: Alan Garny Date: Thu Oct 26 16:24:33 2017 +0200 Some minor cleaning up. commit 53834e449f6688fc0a421b47fc28b66c7693d36c Author: Alan Garny Date: Thu Oct 26 15:42:00 2017 +0200 Some minor cleaning up. commit cdc2f0b886a617f67dd6208fbc5760b8ff91ea4c Author: Alan Garny Date: Thu Oct 26 15:08:06 2017 +0200 Some minor cleaning up. commit 49a73ccdb221295b804ff053c97384d91e09d7ce Author: Alan Garny Date: Thu Oct 26 10:04:40 2017 +0200 Renamed src/simulationexperimentviewinformationgraphpanelwidget.* to src/simulationexperimentviewinformationgraphpanelandgraphswidget.* (#1426). commit 2a597c6b14afce2b58c856afed11651382b42580 Author: Alan Garny Date: Thu Oct 26 09:43:49 2017 +0200 Renamed src/simulationexperimentviewinformationgraphpanelwidget.* to src/simulationexperimentviewinformationgraphpanelandgraphswidget.* (#1426). commit d2282254f2fa166082ff432ef0f56dd3468d73c5 Author: Alan Garny Date: Wed Oct 25 23:03:29 2017 +0200 SimulationExperiment view: our "Graph Panel" panel now has a menu to switch between graphs and graph panel settings (#1426). commit c5a86628d212fb2fd31b4b5fe4ce77fb69ed436a Author: Alan Garny Date: Wed Oct 25 22:56:34 2017 +0200 SimulationExperiment view: our "Graph Panel" panel now has a menu to switch between graphs and graph panel settings (#1426). commit ca567a126aef7b9863ff4c42ff88426570c1477d Author: Alan Garny Date: Wed Oct 25 22:39:51 2017 +0200 SimulationExperiment view: our "Graph Panel" panel now has a menu to switch between graphs and graph panel settings (#1426). commit 8f69b8fbbf0c53cc5af79d8b7a6ca927133def82 Author: Alan Garny Date: Wed Oct 25 22:36:10 2017 +0200 SimulationExperiment view: our "Graph Panel" panel now has a menu to switch between graphs and graph panel settings (#1426). commit ea96359efdfd7c0289306ecc8a917ab6c083b9de Author: Alan Garny Date: Wed Oct 25 11:35:05 2017 +0200 Collapsible widget: added support for a menu to the right (#1426). commit df47d90e2235050ae65fa2002d8838734d7a3e30 Merge: aeeb247ca 3227b22b1 Author: David Brooks Date: Wed Oct 25 22:25:07 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit eddb3715e2b7a06dd055929d450ac10607521d9f Author: Alan Garny Date: Wed Oct 25 10:38:43 2017 +0200 Collapsible widget: added a menu icon to the right (#1426). commit bfff6da0ed1bb4c77bab3a30b7fd1b1764bf367d Author: Alan Garny Date: Wed Oct 25 10:37:28 2017 +0200 Added a menu icon (#1426). commit 63c6b2558898ab7bb316c0e92406aaf26e7b0259 Author: Alan Garny Date: Wed Oct 25 08:44:13 2017 +0200 Some minor cleaning up. commit 917ed87d60dcfe3cc2e7e8916a348b805708a12b Merge: 7346bf9cf 3227b22b1 Author: Alan Garny Date: Tue Oct 24 19:12:38 2017 +0200 Merge branch '\''master'\'' into issue1426. commit 3227b22b1df32007c41a5ac96059e4dfb57170be Merge: c5b495ae6 5308e8d2c Author: Alan Garny Date: Tue Oct 24 19:11:19 2017 +0200 Ignore the "libpng warning: iCCP: known incorrect sRGB profile" warning. commit 7346bf9cf22b780a0579277289b46d7f95935167 Merge: d0fb0c704 5308e8d2c Author: Alan Garny Date: Tue Oct 24 18:01:08 2017 +0200 Merge branch '\''master'\'' into issue1426. commit 5308e8d2ce4e7d539b9a231525ba5818eca5a4b2 Author: Alan Garny Date: Tue Oct 24 17:55:22 2017 +0200 Ignore the "libpng warning: iCCP: known incorrect sRGB profile" warning. commit aeeb247ca8b5dba38e012e200ba39afac4b39faa Author: David Brooks Date: Tue Oct 24 13:16:14 2017 +1300 Python: new PythonQt library (with WebKit wrappers) for macos. commit 69640dfa36531547188b577862b0db16bce3b597 Merge: 38c0707c4 c5b495ae6 Author: David Brooks Date: Tue Oct 24 13:07:54 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 38c0707c417095abd0c49c4b60dd36d09c353d92 Author: David Brooks Date: Tue Oct 24 13:03:51 2017 +1300 Python: rework console creation code. commit 8b3f6478471356cb5197ac573458b3d6c51785ea Author: David Brooks Date: Tue Oct 24 13:02:21 2017 +1300 Python: remove unused code. commit f4709d3fc3865139798b0b9e26ad8e9eef53666c Author: David Brooks Date: Tue Oct 24 13:01:44 2017 +1300 Python: get our Web browser as a QWebView. commit eae54cafaeb675c3ea94a24e43893f038e9396eb Author: David Brooks Date: Tue Oct 24 12:47:44 2017 +1300 Python: tidy up code. commit 65eb7b9fd9cd3c949cec3c62d471fc3f1a0d6d59 Author: David Brooks Date: Tue Oct 24 12:36:19 2017 +1300 Python: build Qt wrappers for WebKit. commit 1bd9e9433359bd9db4c888399c0b80989800ecd1 Author: David Brooks Date: Tue Oct 24 12:34:10 2017 +1300 Python: don'\''t include interface code when building WebKit libraries. commit c5b495ae6fdd08b734126b0d29d1e9937df55500 Merge: 96fd4f59d 7c06d13db Author: Alan Garny Date: Mon Oct 23 23:56:46 2017 +0200 GraphPanel widget: can now interact with a graph panel after it has been exported to a given format (closes #1450). commit 7c06d13db07d6f7f293c3f8b367bd891da17c2cf Author: Alan Garny Date: Mon Oct 23 20:12:28 2017 +0200 Slight update to our downloads page (#1450). commit 4e3aba83f1312e985e9c960311d115ea681201ad Author: Alan Garny Date: Mon Oct 23 20:11:08 2017 +0200 GraphPanel widget: can now interact with a graph panel after it has been exported to a given format (#1450). commit 96fd4f59d4686a72b6763935c258cb7ab20c7132 Merge: a45d450a1 8052d177f Author: Alan Garny Date: Mon Oct 23 20:03:05 2017 +0200 GraphPanel widget: axis labels are now rendered fine when exporting a graph panel to various formats (closes #1448). commit 8052d177f0bd5b2992e07ff87c81b059c3c6c7f5 Author: Alan Garny Date: Mon Oct 23 17:20:34 2017 +0200 Slight updates to our downloads pages (#1448). commit c8be8de8740519520f4b5d87b0bc4d3b27b41ec6 Author: Alan Garny Date: Mon Oct 23 17:17:55 2017 +0200 GraphPanel widget: axis labels are now rendered fine when exporting a graph panel to various formats (#1448). commit d0fb0c70444d164676026c122a5d245d2e2e9938 Merge: e9946a906 a45d450a1 Author: Alan Garny Date: Mon Oct 23 14:47:23 2017 +0200 Merge branch '\''master'\'' into issue1426. commit a45d450a1cc1d4df6ff6b9dd45d049e54cd8b2bf Author: Alan Garny Date: Mon Oct 23 14:46:12 2017 +0200 Slight update to our third-party libraries page [ci skip]. commit 6db7a2f6f0cf32bfe0f56fe502bf8ba5af73605a Author: Alan Garny Date: Mon Oct 23 14:42:41 2017 +0200 QtWebKit package: slight update to our readme file [ci skip]. commit e9946a906d5a56c5551f9be1c06ef02f9b8369dc Merge: 7bbeb2479 bf985c240 Author: Alan Garny Date: Mon Oct 23 11:40:34 2017 +0200 Merge branch '\''master'\'' into issue1426. commit bf985c2405144ca99a638d45210458d8d673c0de Merge: 24cf7539d fe502c223 Author: Alan Garny Date: Mon Oct 23 11:39:50 2017 +0200 New snapshot. commit 7bbeb2479fbef6dac1473efa92584770bb2514fa Merge: 46cb7860c fe502c223 Author: Alan Garny Date: Mon Oct 23 10:29:20 2017 +0200 Merge branch '\''master'\'' into issue1426. commit fe502c2234f8381a87ef1566e0d1afcf0f141bbb Author: Alan Garny Date: Mon Oct 23 10:22:11 2017 +0200 New snapshot. commit 24cf7539d6ea8cdd6298ea3de74cb76419aadb5d Merge: c7ea57847 e2aeb8b54 Author: Alan Garny Date: Mon Oct 23 10:03:47 2017 +0200 Qt: switched to QtWebKit Reloaded (closes #1149). commit e2aeb8b547a0fcad3e58a64862380258baa41e65 Author: Alan Garny Date: Mon Oct 23 09:08:15 2017 +0200 Slight update to our downloads page (#1149). commit 42485bea8e55a732144d086b76bad6169ab7aacf Author: Alan Garny Date: Mon Oct 23 08:42:17 2017 +0200 QtWebKit package: make sure that symbolic links are also packaged on Linux (#1149). commit aa2a67ac4e33f181ebb5b7e55d57ddf83a117291 Author: Alan Garny Date: Sun Oct 22 16:34:19 2017 +0200 QtWebKit package: don’t retrieve our additional Windows dependencies here anymore (#1149). Indeed, we retrieve them and unpack them fine, but then ExternalProject_Add() actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 249a00942aa23497e42c57d54719c50d1daaa9ea Author: Alan Garny Date: Sun Oct 22 15:55:52 2017 +0200 QtWebKit package: don’t retrieve our additional Windows dependencies here anymore (#1149). Indeed, we retrieve them and unpack them fine, but then ExternalProject_Add() actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 846c21975670ed96029a2215af510ea9c28fae19 Author: Alan Garny Date: Sun Oct 22 12:28:55 2017 +0200 QtWebKit package: don’t retrieve our additional Windows dependencies here anymore (#1149). Indeed, we retrieve them and unpack them fine, but then ExternalProject_Add() actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 4ec137344e2b3fa80243d21520cd7776454162a7 Author: Alan Garny Date: Sun Oct 22 12:23:32 2017 +0200 QtWebKit package: yes, we still need to let OpenCOR know about QtWebKit (#1149). commit ca9f1c03efebcfb842dbd3c35ff03a75ed3f85d7 Author: Alan Garny Date: Sun Oct 22 10:22:06 2017 +0200 QtWebKit package: make sure that our debug binaries are properly deployed on Windows (#1149). commit 42b10b5a100a7573a0d13d8da255744814b04b41 Author: Alan Garny Date: Sun Oct 22 10:11:30 2017 +0200 QtWebKit package: make sure that our binaries are properly deployed on Windows (#1149). commit 6936652947deed909dca4c79b782e08c18b490c6 Author: Alan Garny Date: Sat Oct 21 23:22:20 2017 +0200 QtWebKit package: make sure that we can find our CMake files on Windows (#1149). commit 2bfc49faf3883bb76104e6b2a68cac2e20576fee Author: Alan Garny Date: Sat Oct 21 22:55:34 2017 +0200 QtWebKit package: on Windows, retrieve our additional dependencies and '\''install'\'' some ICU files only when having to build QtWebKit (#1149). commit b205b4e86246f3ef6ef00b64123ec173099d9cd1 Author: Alan Garny Date: Sat Oct 21 22:03:19 2017 +0200 QtWebKit package: new binaries for Windows, Linux and macOS (#1149). commit 4077164a0da0645bae22751ad917b80556e26f4b Author: Alan Garny Date: Sat Oct 21 21:23:19 2017 +0200 QtWebKit package: should now be able to build on Windows (#1149). commit 93c6556562580c359d0c51fbc6a861fe84a56797 Author: Alan Garny Date: Sat Oct 21 21:22:27 2017 +0200 Some minor cleaning up. commit 0c27d7ac7f2d89849a7be7cf3ce8d0e46e45d5a5 Author: Alan Garny Date: Sat Oct 21 20:48:11 2017 +0200 QtWebKit package: include the JPEG and PNG libraries to our SHA1 list on macOS (#1149). commit 9d6105cad62b571e268c7d527d71eeb2ede635e1 Author: Alan Garny Date: Sat Oct 21 19:00:57 2017 +0200 QtWebKit package: some work on generating binaries on Windows (#1149). commit 300dfe9b1ec9f8321b858902761177c2c8d14e5a Author: Alan Garny Date: Sat Oct 21 16:41:09 2017 +0200 Some minor cleaning up (#1149). commit a5b8595ac86f579e0d99111ae59bf9de213e2271 Author: Alan Garny Date: Sat Oct 21 14:25:12 2017 +0200 QtWebKit package: mention where we got the prebuilt version of our additional dependencies (#1149). commit 07406cd953cff30e850815079a5e4a04dff1b2e2 Author: Alan Garny Date: Fri Oct 20 19:20:04 2017 +0200 We now have fewer requirements to build QtWebKit (#1149). commit e62069ff23ac8d553f893f74a16b5d45ec790e9c Author: Alan Garny Date: Fri Oct 20 17:59:28 2017 +0200 QtWebKit: new QtWebKit binaries for Linux testing (#1149). commit a849f8ede962e2ea731e6c42b3451163c8ce2d42 Author: Alan Garny Date: Fri Oct 20 17:34:21 2017 +0200 QtWebKit: can now build and use QtWebKit on macOS (#1149). commit 0f4d97b70a2f2db14d4ec99e752bc0853e54b9be Author: Alan Garny Date: Fri Oct 20 16:53:21 2017 +0200 Some minor cleaning up. commit a4508ca6642f12ae39525ba862f06c75940253ef Author: Alan Garny Date: Fri Oct 20 16:25:13 2017 +0200 QtWebKit package: new macOS package (#1149). commit 1f47d4a750ec316c3bda745d1a59d4c266bcb5c6 Author: Alan Garny Date: Fri Oct 20 16:16:24 2017 +0200 QtWebKit package: new macOS package (#1149). We now deploy the JPEG and PNG libraries along with our QtWebKit package on macOS. commit 576e3354e4a91711a358cdca2a357d0b78a4d17b Author: Alan Garny Date: Fri Oct 20 15:18:53 2017 +0200 Some minor cleaning up. commit cd448805d09d8b7f2e49afdc8830bd23ec469f6a Author: Alan Garny Date: Fri Oct 20 14:49:36 2017 +0200 QtWebKit package: new macOS package (#1149). commit 6ad94ed5dcf36b6a00607bf183cf63f9f8d57ac2 Author: Alan Garny Date: Fri Oct 20 14:41:02 2017 +0200 QtWebKit package: fixed the RPATH value on macOS (#1149). commit 2e3532c8997c9697695d7c93a3cd41af87b73f35 Author: Alan Garny Date: Fri Oct 20 13:49:32 2017 +0200 QtWebKit package: some cleaning up with regards to our Linux build (#1149). It doesn’t seem ‘right’ to have to patch the libraries to have the RPATH properly set. So, will have to find a way to get things done ‘right’. commit fd1599bf2467ea420008e015614b38b1ba7d3138 Author: Alan Garny Date: Fri Oct 20 13:25:57 2017 +0200 Some minor cleaning up. commit 39bed4ecee32427db499b37ac52151e51793cf65 Author: Alan Garny Date: Fri Oct 20 13:25:28 2017 +0200 Take advantage of ccache, if available, when building our external projects. commit 56b797637d279e0afa009c05b21079a570294df2 Author: Alan Garny Date: Fri Oct 20 13:14:32 2017 +0200 Take advantage of ccache, if available, when building our external projects. commit ead7ca7dfe4837a6bafd6e77fdd0c4901f28bf22 Merge: d1e4dec08 c7ea57847 Author: Alan Garny Date: Fri Oct 20 10:54:25 2017 +0200 Merge branch '\''master'\'' into issue1149. commit c7ea5784797b1fc67966e5601c2e382aa16f9c62 Merge: 5db817c31 a14ab4e4a Author: Alan Garny Date: Fri Oct 20 10:44:45 2017 +0200 Plugins dialog: made the value of the different fields selectable (closes #1444). commit a14ab4e4a83a75316dae8ab31bbb0b55bff28446 Author: Alan Garny Date: Fri Oct 20 09:49:46 2017 +0200 Slight updates to our downloads and what is new pages (#1444). commit 4836031e58066a3212ffaf5e72cee5806d503168 Author: Alan Garny Date: Fri Oct 20 09:44:07 2017 +0200 Plugins dialog: make the value of all our fields selectable (#1444). commit d1e4dec088524b19743916386dea58e3166aa4d3 Author: Alan Garny Date: Thu Oct 19 20:31:07 2017 +0200 Make sure that the RPATH value is properly set on Linux (#1149). Note: in `cmake/common.cmake`, we redirect the output of `strip -x` since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some ‘problems’ with `strip -x` afterwards, hence we actually `strip -x` before setting the RPATH value... commit 1267f1e418522d183ef871e366caeb3c0d7c6b94 Author: Alan Garny Date: Thu Oct 19 20:23:24 2017 +0200 Make sure that the RPATH value is properly set on Linux (#1149). Note: in `cmake/common.cmake`, we redirect the output of `strip -x` since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some ‘problems’ with `strip -x` afterwards, hence we actually `strip -x` before setting the RPATH value... commit 88c07b8013627a1684a8caf8ba052dcda7027d14 Author: Alan Garny Date: Thu Oct 19 20:18:13 2017 +0200 Make sure that the RPATH value is properly set on Linux (#1149). Note: in `cmake/common.cmake`, we redirect the output of `strip -x` since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some ‘problems’ with `strip -x` afterwards, hence we actually `strip -x` before setting the RPATH value… commit fadc54e5cf81b64ae8ec6256b19fbb10a9c1160b Author: Alan Garny Date: Thu Oct 19 19:55:30 2017 +0200 Some minor cleaning up. commit 78dbbec93940adee979185ecc8ffd0e9a8881941 Author: Alan Garny Date: Thu Oct 19 19:07:53 2017 +0200 Make sure that the RPATH value is properly set on Linux (#1149). commit 564eb546799b25e7f790cb64228f26af9441a13c Author: Alan Garny Date: Thu Oct 19 18:20:12 2017 +0200 Make sure that we can deploy QtWebKit on Linux (#1149). commit da70cb8c931bfb0b55ae1901294a4ab45b694843 Author: Alan Garny Date: Thu Oct 19 18:06:35 2017 +0200 QtWebKit: can now build QtWebKit on Linux (#1149). commit 04d73d42d0357d2c67846ecaf1bdb045b76b569e Author: Alan Garny Date: Thu Oct 19 18:01:16 2017 +0200 Some minor cleaning up (#1149). commit e147ae844755b445482d37db1e1cd74a3f947d0a Author: Alan Garny Date: Thu Oct 19 17:48:06 2017 +0200 QtWebKit: can now build QtWebKit on Linux (#1149). commit b7f637aba3d516ee735a006a8e05e9d63fbbb145 Author: Alan Garny Date: Thu Oct 19 16:42:51 2017 +0200 QtWebKit: can now build QtWebKit on Linux (#1149). commit a89588f80e18564ed95a4a5b7fcc7c3c76d8fcee Author: Alan Garny Date: Thu Oct 19 16:40:51 2017 +0200 CMake: require at least CMake 3.3 for our CREATE_PACKAGE_FILE() macro since this is what we are also requiring for OpenCOR itself. commit 0b78fb1915df8355d503e9d26600bbe679bc7e05 Author: Alan Garny Date: Thu Oct 19 16:40:13 2017 +0200 QtWebKit: can now build QtWebKit on Linux (#1149). commit 265ba030393b57bfaa66fe32ec3ced37f95dad1e Author: Alan Garny Date: Thu Oct 19 14:42:57 2017 +0200 QtWebKit: can now build QtWebKit on macOS (#1149). commit 7a957d0478bcd03ab1aae31b29a7cda7723e8a9f Merge: 3ea98c8ea 5db817c31 Author: Alan Garny Date: Thu Oct 19 14:36:42 2017 +0200 Merge branch '\''master'\'' into issue1149. commit 5db817c311727f0357a5c0dbf6ad1ec878471c0e Merge: 3e882e80f b516151e7 Author: Alan Garny Date: Thu Oct 19 14:17:23 2017 +0200 CMake: removed from our ADD_PLUGIN () macro the arguments that we don'\''t use anymore. commit 3ea98c8ea4345b799956feb2ad66ce369f517db4 Author: Alan Garny Date: Thu Oct 19 13:21:23 2017 +0200 Some minor cleaning up. commit b516151e76cb6409409c7a6af58173ed8d61a1f7 Author: Alan Garny Date: Thu Oct 19 11:57:38 2017 +0200 BioSignalML API: added some global CMake variables. To be consistent with what we have done for our other packages. commit 6847f5e2ae59ceca7aa0e40538eadf10db3b683c Author: Alan Garny Date: Thu Oct 19 11:16:33 2017 +0200 CMake: removed from our ADD_PLUGIN () macro the arguments that we don'\''t use anymore. commit 6340fb0c45f0b32403920e7b8701a3d366e9cc3e Author: Alan Garny Date: Thu Oct 19 11:16:00 2017 +0200 Revert "CMake: removed from our ADD_PLUGIN () macro the arguments that we don'\''t use anymore." This reverts commit c950c1aef3f47748b8fd433a7519824231ccc6d6. commit c950c1aef3f47748b8fd433a7519824231ccc6d6 Author: Alan Garny Date: Thu Oct 19 09:37:42 2017 +0200 CMake: removed from our ADD_PLUGIN () macro the arguments that we don'\''t use anymore. commit 3fc06b76e0e25d886bcf22b34d403b30e0a3f4cb Merge: a7efe322c 3e882e80f Author: David Brooks Date: Thu Oct 19 08:00:42 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit ff2a93f7abea4b11383b4152ca6a3534295be775 Author: Alan Garny Date: Wed Oct 18 17:05:15 2017 +0200 QtWebKit: updated our requirements for Linux and macOS (#1149). We already need that package to build OpenCOR itself, so no need to specify it here. commit b2fca0c954c5bef05b9c5977878a6fcde6e7e750 Merge: ef4a253b8 3e882e80f Author: Alan Garny Date: Wed Oct 18 17:03:43 2017 +0200 Merge branch '\''master'\'' into issue1149. commit 3e882e80f45cd2e3ccb79481be3830500f56a318 Author: Alan Garny Date: Wed Oct 18 17:02:46 2017 +0200 Disable Zinc since we are not currently making use of it. ... and thus make our various packages somewhat smaller... commit ef4a253b8496a42952abc9611a149930d210a97d Author: Alan Garny Date: Wed Oct 18 16:43:20 2017 +0200 QtWebKit: update our requirements for Linux and macOS (#1149). commit 46cb7860c92b168a7cdd7c571b8edff089ae53d2 Merge: 6fab61b21 83f2ddaf8 Author: Alan Garny Date: Wed Oct 18 12:54:24 2017 +0200 Merge branch '\''master'\'' into issue1426. commit 83f2ddaf891f2adf2d1431f4457a4b777558186a Merge: b8a70ebde dd40f3aae Author: Alan Garny Date: Wed Oct 18 12:51:34 2017 +0200 Qt: upgraded to Qt 5.9.2 LTS (#1311). commit dd40f3aae3c45e1ceb5a1bc0ebb3f3466e3a3bf8 Author: Alan Garny Date: Wed Oct 18 10:51:06 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use (#1311). commit dc135440db7a55f221a67281de8dad58a0809cf4 Author: Alan Garny Date: Wed Oct 18 07:17:57 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use (#1311). commit b25dfd458b7c366ef0c6faf6ad3eb250ae50fb96 Author: Alan Garny Date: Wed Oct 18 07:09:41 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use (#1311). commit a7e37e0133e913c94b54c070ee2003d86e466242 Author: Alan Garny Date: Wed Oct 18 00:01:47 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use (#1311). commit 633f78840a83143efb441cf90cb1f1242b1eac75 Author: Alan Garny Date: Tue Oct 17 19:19:05 2017 +0200 Get our sample plugins to build and update their documentation (#1311). commit b68193dec8ef9fe45f9f06ed9984de822f884a59 Author: Alan Garny Date: Tue Oct 17 18:12:16 2017 +0200 Slight update to our downloads page (#1311). commit be1f4b80d5739dee7caeaf8e1f803582ca8d8838 Author: Alan Garny Date: Tue Oct 17 18:11:58 2017 +0200 Travis CI: use Qt 5.9.1 on Linux since the 5.9.2 PPA is not yet available (#1311). commit 77e928a84eb6c1f047b8659b6f42b08e48f223d2 Author: Alan Garny Date: Tue Oct 17 17:42:32 2017 +0200 Travis CI: use Qt 5.9.1 on Linux since the 5.9.2 PPA is not yet available (#1311). commit 89f26ef50ff486271b76e9f88c7ea43e6f230374 Author: Alan Garny Date: Tue Oct 17 17:31:17 2017 +0200 Some minor cleaning up. commit 110fd5fd5f23ecc76ef4c10f756fa4c8f6d36edd Author: Alan Garny Date: Tue Oct 17 17:24:14 2017 +0200 Tab bar widget: make sure that the selected tab text is not bright when OpenCOR is not active (#1311). commit a8aadc466eb5be1895b638f03bbf4656b0ea0c51 Author: Alan Garny Date: Tue Oct 17 16:55:55 2017 +0200 Tab bar widget: have TabBarStyle::drawControl() use a bright colour for the selected tab text (#1311). commit d2238b34cb6279f8fa3153a23e0c6d040aff6a93 Author: Alan Garny Date: Tue Oct 17 16:37:33 2017 +0200 Tab bar widget: no need to reference our proxy style since it'\''s us! (#1311) commit 48d61e02afa54f81e1b0d32559288fc3a2b3e8dd Author: Alan Garny Date: Tue Oct 17 16:33:55 2017 +0200 Tab bar widget: account for an icon in TabBarWidget::tabSizeHint() (#1311). commit 6d40827e5be180dfa537277496a16df9746c3429 Author: Alan Garny Date: Tue Oct 17 16:17:40 2017 +0200 Tab bar widget: move the icon/text closer to the close icon, if any (#1311). Note: in TabBarWidget::tabSizeHint(), and unlike in TabBarStyle::tabLayout(), we don’t distinguish between the close icon being in the left or right side of the tab, but this should be fine since we are only customising the styling on macOS… commit 9e01286ae648f3f7ec7b905e7b93d3416ccac383 Author: Alan Garny Date: Tue Oct 17 15:56:13 2017 +0200 Tab bar widget: slight update to our TabBarStyle::subElementRect() method (#1311). commit c80975c6afafe90999f9842fe9f4e99d540f630c Author: Alan Garny Date: Tue Oct 17 15:50:23 2017 +0200 Some minor cleaning up (#1311). commit 860f0ab9aea47e52d1ad654d0848d43aa52b1181 Author: Alan Garny Date: Tue Oct 17 14:55:18 2017 +0200 Tab bar widget: no need to call subElementRect() since it does the same as our tabLayout() method, which we call just before (#1311). commit 9e212483a0ff5b9e23883cdd5458057c4ca1564d Author: Alan Garny Date: Tue Oct 17 14:20:41 2017 +0200 Tab bar widget: shift our text closer to the close button (#1311). commit d0ec923ddee1fb2bb8b48c26dff31d9d64b35ebf Author: Alan Garny Date: Tue Oct 17 12:42:13 2017 +0200 Tab bar widget: use our own style on macOS (#1311). For now, we just copied/pasted the contents of some Qt methods. We now need to ‘fix’ them… commit 7877bcdd8a099d4648f3f7f9d27f1a9b0a958769 Author: Alan Garny Date: Tue Oct 17 11:36:11 2017 +0200 Tab bar widget: use our own style on macOS (#1311). For now, we just copied/pasted the contents of some Qt methods. We now need to ‘fix’ them… commit 4c3871b9d03086ae49124480a868210588315c9d Author: Alan Garny Date: Tue Oct 17 11:24:05 2017 +0200 Tab bar widget: use our own style on macOS (#1311). For now, we just copied/pasted the contents of some Qt methods. We now need to ‘fix’ them… commit b630b926b2668e404c52413c814f0be9f71abe77 Merge: b04a8b904 b8a70ebde Author: Alan Garny Date: Tue Oct 17 11:10:16 2017 +0200 Merge remote-tracking branch '\''opencor/master'\'' into issue1311. commit b8a70ebdec570cdec9229ffb271f1945ad43d0b8 Author: Alan Garny Date: Tue Oct 17 11:09:41 2017 +0200 Slight update to our prerequisites page [ci skip]. commit b04a8b904ae55a105ade3e0def8277bb10e47293 Author: Alan Garny Date: Tue Oct 17 10:42:39 2017 +0200 Tab bar widget: use our own style on macOS (#1311). For now, we just copied/pasted the contents of some Qt methods. We now need to ‘fix’ them… commit dd23fa515e17ab22a8ae140e75ea33c4b2193a68 Author: Alan Garny Date: Mon Oct 16 16:11:47 2017 +0200 Some minor cleaning up. commit 31898a39502206c5dfdce4ad08bf367f56fea574 Author: Alan Garny Date: Mon Oct 16 10:52:56 2017 +0200 Some minor cleaning up regarding our Edit menu (#1311). This indirectly addresses an issue with menu separators on Linux. commit 44b39602e146c909af3429ab56dd5d9b9f132d99 Author: Alan Garny Date: Mon Oct 16 10:24:26 2017 +0200 Main window: handle our menu separators so they get properly hidden on Linux (#1311). commit fdcd0d46fe5b4a8b34517ddf4d33fe6fd9c05f49 Author: Alan Garny Date: Mon Oct 16 10:19:41 2017 +0200 Some minor cleaning up with regards to menu actions to be added to OpenCOR (#1311). commit 0df24e36da8d04c1c13f9222cb5d30c04d32e050 Author: Alan Garny Date: Mon Oct 16 10:13:01 2017 +0200 SEDMLEditing view: handle our menu separators so they get properly hidden on Linux (#1311). commit a55e9cce224a7280bec6b2ed713efff455d09c29 Author: Alan Garny Date: Mon Oct 16 10:06:27 2017 +0200 CellMLEditing view: handle our menu separators so they get properly hidden on Linux (#1311). commit 73dcc01b73e6e1b891870e0fab801275fdd5f534 Author: Alan Garny Date: Sun Oct 15 18:47:10 2017 +0200 Some minor cleaning up. commit 853b42364865e2b4cd79c0bd1e8814c6b5299f87 Author: Alan Garny Date: Sun Oct 15 17:12:00 2017 +0200 Revert "Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1." This reverts commit 4c7ecb6ce60aa0764554bc39194fa546c486b322. commit bc0f7d4c72c4c553f2ed432866aec84773e1da81 Author: Alan Garny Date: Sun Oct 15 17:11:51 2017 +0200 Revert "Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1." This reverts commit 10392dc2b22d894f98efef1e8dc4121e8c3013dc. commit 10392dc2b22d894f98efef1e8dc4121e8c3013dc Author: Alan Garny Date: Sun Oct 15 17:00:03 2017 +0200 Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1. commit 4c7ecb6ce60aa0764554bc39194fa546c486b322 Author: Alan Garny Date: Sun Oct 15 16:56:50 2017 +0200 Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1. commit 2a80c8a82431cd850c677339e4baf25931191680 Author: Alan Garny Date: Sun Oct 15 11:36:10 2017 +0200 Travis CI: upgrade to Qt 5.9.2 LTS on macOS (#1311). commit f14b8c67c13b62d7307c977915e075378a3c5170 Author: Alan Garny Date: Sun Oct 15 11:15:04 2017 +0200 Travis CI: upgrade to Qt 5.9.2 LTS (#1311). Note: the PPA is not yet ready, but hopefully it will be by the time we are ready to PR. Worst case scenario, we could use the Qt 5.9.1 PPA. commit 678fb6a63a9ee42dd34d1256c863736f3a7473c6 Author: Alan Garny Date: Sat Oct 14 21:14:14 2017 +0200 Some minor cleaning up. commit f8855d6b4d5c74ad0433076b167daf8143f4d924 Author: Alan Garny Date: Sat Oct 14 20:44:25 2017 +0200 Some minor cleaning up. commit 8fcaf23164ba1f56c846a347e7f8ba66e50d77ff Author: Alan Garny Date: Sat Oct 14 17:37:10 2017 +0200 Improved the populating of our `Tools` menu (#1311). commit 39c43d953ff2da5a423b0bb8d9a0fbb602310400 Author: Alan Garny Date: Sat Oct 14 16:41:11 2017 +0200 Make sure that we are using Qt 5.9.x LTS and later (#1311). commit b246ecf18791095d76353b4c393855be1cecc679 Author: Alan Garny Date: Sat Oct 14 15:38:48 2017 +0200 StyledItemDelegate: use a slightly smaller height on Windows and macOS, if an item has an icon (#1311). commit 496bc693e0d22cc7f2df563ffe49ea6c30e6b2cc Author: Alan Garny Date: Sat Oct 14 15:31:58 2017 +0200 CellML Annotation view: use our new StyledItemDelegate class (#1311). commit 878fe07df38be37f777e0a627bcab3843eabaa0e Author: Alan Garny Date: Sat Oct 14 15:27:54 2017 +0200 Data store dialog: use our new StyledItemDelegate class (#1311). commit 4a60c2ce603ee4f27628dd00103dd2453133b275 Author: Alan Garny Date: Sat Oct 14 15:24:15 2017 +0200 Plugins and preferences dialogs: use our new StyledItemDelegate class (#1311). commit 149006390413ff6cc96195b149bced4f61bd4093 Author: Alan Garny Date: Sat Oct 14 15:18:41 2017 +0200 Some minor cleaning up. commit ad573e71918616022338ec3410114b57f4440a0f Author: Alan Garny Date: Sat Oct 14 15:16:08 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon (#1311). commit 8921b1a4f0b9c293498914f4b5209c3583473e27 Author: Alan Garny Date: Sat Oct 14 14:53:56 2017 +0200 Some minor cleaning up. commit 9982bd4081b60e5425c7c0c9ea374e2ce0dfa858 Author: Alan Garny Date: Sat Oct 14 14:39:03 2017 +0200 Some minor cleaning up. commit 002c94233dc48f8854adfc6d69686b96748ee819 Merge: e6949c6de 25e37e278 Author: Alan Garny Date: Sat Oct 14 10:22:00 2017 +0200 Merge branch '\''master'\'' into issue1311 commit 6fab61b215710e61128db94d880d1eae2ddaf96b Merge: c12e70d46 25e37e278 Author: Alan Garny Date: Sat Oct 14 10:20:59 2017 +0200 Merge branch '\''master'\'' into issue1426 commit 25e37e278a2e2dc363fd72c6dd99e05e327484d4 Author: Alan Garny Date: Sat Oct 14 10:18:57 2017 +0200 Use the 64-bit version of the 64-bit compiler on Windows [ci skip]. Indeed, we used to use the 32-bit version in case we were running a 32-bit version of Windows, but by now everybody should be using a 64-bit version, so we may as well take advantage of the slightly more efficient 64-bit version of the 64-bit compiler. commit e6949c6de92e8e1c775f6deb3ee717afc9b0a60c Author: Alan Garny Date: Thu Oct 12 17:13:20 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon (#1311). commit dbc44ea444ca12e988a392204666892726942ce0 Author: Alan Garny Date: Thu Oct 12 17:12:46 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon (#1311). commit 4e943052bf2695915c87596faf5a3dc68abf38ee Author: Alan Garny Date: Thu Oct 12 10:22:46 2017 +0200 Some minor cleaning up. commit 1b97d4f85cf1ff99ca1fabde91cfd45cfee571cb Author: Alan Garny Date: Thu Oct 12 09:36:56 2017 +0200 Some minor cleaning up. commit 9e988a7667e0624db4892d781ad2cb331f5895fe Author: Alan Garny Date: Wed Oct 11 11:32:16 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon (#1311). commit 17c30fab5d3fe676ff20dce9748bb271dc3975c8 Merge: 05d72e54f 3679a87ba Author: Alan Garny Date: Wed Oct 11 07:12:57 2017 +0200 Merge branch '\''master'\'' into issue1311. commit c12e70d46b43b0fc71ec216e7caae59893a17a45 Author: Alan Garny Date: Wed Oct 11 07:12:35 2017 +0200 Merge branch '\''master'\'' into issue1426. commit 3679a87baf900413bb83daac164a547e6248a8f2 Merge: fd9310c19 4e75536f7 Author: Alan Garny Date: Wed Oct 11 07:08:17 2017 +0200 Slight update to our downloads and what is new pages. commit 4e75536f7ed6246e87b103a6670e568f6926fa14 Author: Alan Garny Date: Tue Oct 10 23:23:06 2017 +0200 Slight update to our downloads and what is new pages. commit 05d72e54f9143fb91f3a9ef0616064bb7895efe7 Merge: 3927604bc fd9310c19 Author: Alan Garny Date: Tue Oct 10 23:16:36 2017 +0200 Merge branch '\''master'\'' into issue1311. commit e8d0820ce826dd8be19af5b940fa6bb2e53d8e89 Merge: 9f306ef1b fd9310c19 Author: Alan Garny Date: Tue Oct 10 23:16:06 2017 +0200 Merge branch '\''master'\'' into issue1426. commit fd9310c19469c97841ca78ff49258ad33d0f3fef Author: Alan Garny Date: Tue Oct 10 23:15:02 2017 +0200 PMR window: really retrieve the exposures only when needed. Indeed, when initialising ourselves or changing our PMR support'\''s preferences, then we were retrieving our exposures, independent of whether we were visible or not while we only want to do that when we are visible, so as not to waste internet resources and potentially hanging up ourselves for no good reason. commit 3927604bc01f102fe57019b2c3fc974656873172 Author: Alan Garny Date: Tue Oct 10 07:41:59 2017 +0200 Don'\''t build QtWebKit anymore (#1311). commit 56faa1808d35dd32074893a6ddd9004a288413b5 Author: Alan Garny Date: Tue Oct 10 07:41:19 2017 +0200 Generated binaries for QtWebKit 5.9.2 (#1311). commit 51c2523e56329d6ab288105162c5af402d19c975 Author: Alan Garny Date: Mon Oct 9 23:10:39 2017 +0200 Getting ready to build QtWebKit (#1311). commit a7efe322ce3f187fa06363781db9e0a60953d645 Author: David Brooks Date: Tue Oct 10 10:04:10 2017 +1300 Python: work on documentation. commit ff3724f4f17172c9a8811949f89ba558cd9cbca6 Merge: 8f837c888 8dbfaad15 Author: David Brooks Date: Mon Oct 9 12:31:02 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 8f837c888ef8633ed80acaba176154ed7950c3d9 Author: David Brooks Date: Mon Oct 9 12:19:17 2017 +1300 Python: don'\''t open remote files twice... commit c1cba86073894ef6d1e137aaa4e46a0185965ba5 Author: Alan Garny Date: Sun Oct 8 13:50:59 2017 +0200 Don'\''t build QtWebKit anymore (#1311). commit 157ad2bbeedad23aec83b74c5fc29515203519b4 Author: Alan Garny Date: Sat Oct 7 20:21:48 2017 +0200 Generated binaries for QtWebKit 5.9.2 (#1311). commit 7d7920ec19465f951577442abc04e2947e5f82ef Author: Alan Garny Date: Sat Oct 7 19:22:57 2017 +0200 Slight updates to our QtWebKit readme file (#1311). commit d37d18564a8d34f49a074d510114d3e6b637eb0f Merge: 609754a6a 8dbfaad15 Author: Alan Garny Date: Sat Oct 7 14:57:22 2017 +0200 Merge branch '\''master'\'' into issue1311. commit 9f306ef1bad1bc5ad629ce862067c95250b4d8a6 Merge: c8efb8757 8dbfaad15 Author: Alan Garny Date: Sat Oct 7 14:56:38 2017 +0200 Merge branch '\''master'\'' into issue1426. commit 8dbfaad1581c7972ca48b83a4530fd1f2e67a94f Author: Alan Garny Date: Sat Oct 7 14:55:24 2017 +0200 Some minor cleaning up [ci skip]. commit 609754a6a8ff9ac7171b87b2d383e9424b6f2f11 Author: Alan Garny Date: Sat Oct 7 12:57:53 2017 +0200 Slight update to our QtWebKit readme file (#1311). commit 4e408768100af42c0a55202f0e9700ad47f2cf26 Author: Alan Garny Date: Sat Oct 7 10:56:53 2017 +0200 Getting ready to build QtWebKit (#1311). commit ad522169b2f2031d52b6852e2d45123987a2626c Author: Alan Garny Date: Sat Oct 7 10:56:19 2017 +0200 Removed our dependency on Lucene (#1311). commit 2cd895a4ecfc3d2dab78428cd4386defdc55b2fa Author: Alan Garny Date: Sat Oct 7 10:55:24 2017 +0200 QtWebKit: now rely on our 5.9.2 version of that library (#1311). commit 9b91029eb30de920cec965fb6f0757999f19c7bc Author: Alan Garny Date: Sat Oct 7 10:54:02 2017 +0200 Slight update to our prerequisites page (#1311). commit c8efb875794436e416c261a2751b3c8fbdae080d Author: Alan Garny Date: Fri Oct 6 10:49:40 2017 +0200 SimulationExperiment view: renamed our "Graphs" panel to "Graph Panel" (#1426). commit 3e8f46aab83f850a61be0ceef684fcd56feb9f32 Merge: 9db6759fc 8333d06d7 Author: Alan Garny Date: Fri Oct 6 10:13:10 2017 +0200 New snapshot. commit 32a9ae9a33ed72fced6f83724b85c5bea8658288 Author: David Brooks Date: Fri Oct 6 10:48:48 2017 +1300 Python: cleaning up. commit 6eca515eab73c9db237259d6c8c3b240acbc843c Merge: b4ea9598e 9db6759fc Author: David Brooks Date: Fri Oct 6 08:28:36 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 8333d06d7565ccfe1e90aeb480f983646efe437c Author: Alan Garny Date: Thu Oct 5 18:54:38 2017 +0200 New snapshot. commit 9db6759fc3e4fec9d201f7fdc99c845baf81be14 Merge: a8ee8f749 5775c8928 Author: Alan Garny Date: Thu Oct 5 18:52:59 2017 +0200 Greatly improved our support for log scales (closes #1412). commit 5775c89288989d7e2b15c0bf438a0bf642347f01 Author: Alan Garny Date: Thu Oct 5 17:50:33 2017 +0200 GraphPanel widget: fixed a stupid mistake (#1412). commit 00694d9f7170243c807a4d79c3385b28d2941880 Author: Alan Garny Date: Thu Oct 5 17:22:49 2017 +0200 Corrected the version of OS X / macOS we now support. commit 98f2877d617314dcfd87be1fc53f7157eab2f76e Author: Alan Garny Date: Thu Oct 5 17:21:10 2017 +0200 Reverted our '\''New snapshot'\'' (#1412). commit a2325e418b10ac0c0780de08dacb0d51070ffff9 Author: Alan Garny Date: Thu Oct 5 17:00:16 2017 +0200 Added or improved some SED-ML test files (#1412). commit 4fb9a51bfb993f21d1758d9f6aef6ede49f7a16e Author: Alan Garny Date: Thu Oct 5 16:30:20 2017 +0200 Some minor cleaning up. commit a8ee8f7493d70fc935025335aee3767ae942eaf2 Merge: f5bb1c014 8d1829415 Author: Alan Garny Date: Thu Oct 5 15:47:12 2017 +0200 New snapshot. commit 8d18294159b55e001627aebe4281d1e79fe3718f Author: Alan Garny Date: Thu Oct 5 14:44:00 2017 +0200 New snapshot. commit f5bb1c0148353af1180ad4215bb6453cb9b98ba5 Merge: cc6b31b72 0d63327cf Author: Alan Garny Date: Thu Oct 5 14:36:30 2017 +0200 Greatly improved our support for log scales (closes #1412). commit 0d63327cf1cc5f178debfb5f51fb1efad92fb390 Merge: 39ca75212 cc6b31b72 Author: Alan Garny Date: Thu Oct 5 13:42:45 2017 +0200 Merge branch '\''master'\'' into issue1412. commit cc6b31b72b445cb98a4320984856ee7178bc19b7 Merge: be20677f9 2d6c49113 Author: Alan Garny Date: Thu Oct 5 13:34:33 2017 +0200 Some minor cleaning up and refactoring. commit 39ca75212867d084fe0b6bc5d89cddc576faeb40 Author: Alan Garny Date: Thu Oct 5 11:33:47 2017 +0200 Some minor cleaning up. commit 2d6c49113d1ef3368a7f5bc2d4287b9edeb45e34 Author: Alan Garny Date: Thu Oct 5 11:32:15 2017 +0200 Some minor cleaning up. commit 7490fbae1b077d9275a8527802f33d9360afc392 Author: Alan Garny Date: Thu Oct 5 11:29:47 2017 +0200 Some minor refactoring and cleaning up. commit 0e8103dfbadb2abf7e936b9eb60b642c3a464e18 Author: Alan Garny Date: Thu Oct 5 11:25:33 2017 +0200 Some minor cleaning up. commit 1d058f8c5990557a121a1673323a441269268b69 Author: Alan Garny Date: Thu Oct 5 11:22:14 2017 +0200 Slight update to our downloads page (#1412). commit 3d25a1b646320388f39e982da915af57146bff51 Author: Alan Garny Date: Thu Oct 5 11:13:47 2017 +0200 Added some test SED-ML files for testing our linear/log axes (#1412). commit bc79d08fbfe2902c9233b91f30b115e5bd1acace Author: Alan Garny Date: Thu Oct 5 10:48:46 2017 +0200 GraphPanel widget: improved GraphPanelPlotWidget::dataLogRect() (#1412). commit b4ea9598e63e784f980db2d639bbdb4f45bf78ed Author: David Brooks Date: Thu Oct 5 17:48:11 2017 +1300 Python: update `PythonPackages` for WIndows and Linux. commit 85afd705936f8c2d739e06bdc7c98caaede964fb Author: David Brooks Date: Thu Oct 5 16:50:15 2017 +1300 Python: update to IPython 6.2.1 and qtconsole 4.3.1 commit e75b4591cc36540111a428dffd629eb3d0474674 Author: David Brooks Date: Thu Oct 5 11:39:18 2017 +1300 Python: turn off output when updating path to Python unless `--verbose` given. commit f6d650bcea38c71b91e816d836f2938f7e5304a0 Author: David Brooks Date: Thu Oct 5 11:27:58 2017 +1300 Python: remove `virtualenv` specific code. commit e5059ac1654ca6de19540ea5b553fa76b6115930 Author: David Brooks Date: Thu Oct 5 11:26:48 2017 +1300 Python: add '\''.'\'' to the head of IPython'\''s search path. commit 9f7429f374e8b30d03e452ef20af593a7b033d40 Author: Alan Garny Date: Wed Oct 4 19:11:12 2017 +0200 GraphPanel widget: get GraphPanelPlotWidget::dataRect() and GraphPanelPlotWidget::dataLogRect() to tell us whether they are returning something meaningful (#1412). Indeed, the problem was that when running a simulation with a big simulation delay, then the first time we would call GraphPanelPlotWidget::dataRect() or GraphPanelPlotWidget::dataLogRect(), we would end up with QRectF(minX, minY, maxX-minX, maxY-minY) where minX = maxX and minY = maxY, which when tested using QRectF::isNull() would return true while we didn'\''t want that. Although the values result in '\''null'\'', they are actually meaningful to us. commit 6e90896e55d20b5e8104d56743982bc7e544e82b Author: Alan Garny Date: Wed Oct 4 18:55:21 2017 +0200 GraphPanel widget: get GraphPanelPlotWidget::dataRect() and GraphPanelPlotWidget::dataLogRect() to tell us whether they are returning something meaningful (#1412). Indeed, the problem was that when running a simulation with a big simulation delay, then the first time we would call GraphPanelPlotWidget::dataRect() or GraphPanelPlotWidget::dataLogRect(), we would end up with QRectF(minX, minY, maxX-minX, maxY-minY) where minX = maxX and minY = maxY, which when tested using QRectF::isNull() would return true while we didn'\''t want that. Although the values result in '\''null'\'', they are actually meaningful to us. commit 5333b33ed35c2057ecb77c59e0c2d8656500392a Author: Alan Garny Date: Wed Oct 4 18:23:31 2017 +0200 GraphPanel widget: fixed a small problem with GraphPanelPlotGraph::boundingLogRect() (#1412). commit bf66838db7be6a10e7614df5b5c057fbfeee1751 Author: Alan Garny Date: Wed Oct 4 17:47:58 2017 +0200 SimulationExperiment view: make sure that our default linear/log axes values are set when clearing a graph panel (#1412). commit 07378e8778edd5fbe5d72826d2f31b80fc989c37 Author: Alan Garny Date: Wed Oct 4 17:17:27 2017 +0200 GraphPanel widget: updated GraphPanelPlotWidget::realDataRect() (#1412). Now, GraphPanelPlotWidget::realDataRect() accounts for the log scales. commit acb5327e4f18eb3eb78c2cf0a52e2f65e44217b0 Author: Alan Garny Date: Wed Oct 4 16:10:14 2017 +0200 Some minor cleaning up. commit 80ecd42a786b627524336185922eb09858fc3783 Author: Alan Garny Date: Wed Oct 4 15:55:17 2017 +0200 SimulationExperiment view: determine what the VOI axis log range should be like (#1412). commit 8dd1a794d47c0da788d7f5af9320a55d81c84967 Author: Alan Garny Date: Wed Oct 4 15:52:46 2017 +0200 SimulationExperiment view: determine what the VOI axis log range should be like (#1412). commit 3f8a632c063a8d57650b464f2bfd37a9c368b01c Author: Alan Garny Date: Wed Oct 4 15:26:40 2017 +0200 Slight reworking of SimulationExperimentViewSimulationWidget::simulationPropertyChanged() (#1412). This is so that if the user changes the point interval and that we are using a log scale, then the axes can be updated accordingly, if needed. For example, say that the X axis uses the [0; 1000] range and that we have a point interval of 0.1, then a log scale will result in the X axis actually using the [0.1; 1000] range. commit a26e1c756cb95da1c7b77e95644903f19fb83e43 Author: Alan Garny Date: Wed Oct 4 14:49:10 2017 +0200 SimulationExperiment view: make use of the new GraphPanelPlotGraph::setData() method (#1412). commit d8de1d47abfe091ae3fe028de18d060d27bfe9a8 Author: Alan Garny Date: Wed Oct 4 14:48:21 2017 +0200 GraphPanel widget: added the GraphPanelPlotWidget::dataLogRect() method (#1412). commit 006d005f8345d7bd6c775571de7d16c691f36d8c Author: Alan Garny Date: Wed Oct 4 11:52:00 2017 +0200 Some minor cleaning up. commit f589fecf41a533d7180eefd8ff363eee01ebc77a Author: David Brooks Date: Wed Oct 4 11:52:34 2017 +1300 Python: Windows'\'' package needs to include the SQLite3 import library. commit d6a76266f4baf0023fd16cc66f9a6781fc4eb33a Merge: 39055e33d be20677f9 Author: David Brooks Date: Wed Oct 4 09:12:27 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 6d088cd7312924de9210eccdd20b36cd04d7526b Merge: 8a48aa0a6 be20677f9 Author: Alan Garny Date: Tue Oct 3 18:32:36 2017 +0200 Merge branch '\''master'\'' into issue1412. commit be20677f988c52d615944a1bdf6496fc920efa7f Merge: 5c88c9873 fef816054 Author: Alan Garny Date: Tue Oct 3 18:31:04 2017 +0200 Addresses issues #1432 and #1433 (closes #1432) (closes #1433). commit fef816054a0fa61ce507f87b1f09314fdaa4942d Author: Alan Garny Date: Tue Oct 3 17:45:02 2017 +0200 Some minor cleaning up (#1432 and #1433). commit f02604f38b0282ebcdcd94e9b5f1a920bcf1a49f Author: Alan Garny Date: Tue Oct 3 17:19:34 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries on Windows (#1432 and #1433). commit 0a1389ce1135d07abb9885a3a23e905ad705339b Author: Alan Garny Date: Tue Oct 3 16:48:05 2017 +0200 Some minor cleaning up (#1432 and #1433). commit de66e9ce92b97032cf6a553502a3d9b031dca9df Author: Alan Garny Date: Tue Oct 3 16:47:48 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries on Linux and macOS (#1432 and #1433). commit 7df80787c92421bce2687c0aef33463fc2d3f8be Author: Alan Garny Date: Tue Oct 3 16:36:59 2017 +0200 Getting ready to build libSBM, libNuML and libSEDML (#1432 and #1433). commit eaa6e6b4ca58495199174635a93e7e645c4d84f3 Author: Alan Garny Date: Tue Oct 3 16:06:38 2017 +0200 Slight updates to our downloads and what is new pages (#1432 and #1433). commit ad205fa69cccd7b4c7c5ec8731e271bf025fb263 Author: Alan Garny Date: Tue Oct 3 15:42:22 2017 +0200 libNuML package: fixed a small problem with the value of PACKAGE_REPOSITORY (#1432 and #1433). commit 4c4c02f8fda98995ce85c65706b5eba1747cc3b5 Author: Alan Garny Date: Tue Oct 3 15:41:37 2017 +0200 Some minor cleaning up. commit 2ff3200d8a0a96bbd2c12ad7acfd270c8f01b618 Author: Alan Garny Date: Tue Oct 3 15:35:09 2017 +0200 Some minor cleaning up (#1432 and #1433). commit f7cec38fb3a3656d3bf2ede6aba38a5949de2c96 Author: Alan Garny Date: Tue Oct 3 15:34:31 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries (#1432 and #1433). commit bce27b247ba4cbe97fe53f5425b19c37c70fb5fa Author: Alan Garny Date: Tue Oct 3 15:26:40 2017 +0200 libNuML/libSEDML plugins: get their dependencies right (#1432 and #1433). commit 38943ab8bd8016a94d5c68adf6a1923ffd499b9f Author: Alan Garny Date: Tue Oct 3 14:47:31 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 (#1432 and #1433). commit 122caf69f0ab490e441796acf4c0a9afb06698f4 Author: Alan Garny Date: Tue Oct 3 13:38:46 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 (#1432 and #1433). commit d73c9c0228fa4ded5731b47758d9a8546b484108 Author: Alan Garny Date: Tue Oct 3 11:29:09 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 (#1432 and #1433). commit d5255779723b35d0fa0ea0b9eabcfb4261636473 Author: Alan Garny Date: Tue Oct 3 11:06:38 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 (#1432 and #1433). commit 36009544bb1ac3f9db7a611cbb730e605a05ace5 Author: Alan Garny Date: Tue Oct 3 10:36:11 2017 +0200 Some minor cleaning up. commit a04902ab9e7442c4adb7f11139de58a1e536870d Author: Alan Garny Date: Tue Oct 3 10:27:25 2017 +0200 Getting ready to build libSBML and libSEDML (#1432). commit 8a48aa0a63c1c7e9adceeeb27fbffee2c14b0726 Author: Alan Garny Date: Mon Oct 2 17:40:51 2017 +0200 Some minor cleaning up. commit e88ef6f10a263643de4d66566ad2741c770a387c Author: Alan Garny Date: Mon Oct 2 16:02:20 2017 +0200 GraphPanel widget: simplified the optimisation of axes (#1412). We used to optimise an axis'\'' values by making sure that they would fall onto a factor of its minor step. This was working fine with linear axes, but this is next to impossible to get to work with log axes. So, now, the only '\''optimisation'\'' is to handle the case where the minimum and maximum values of an axis are the same. commit 15c28b7e832317a03e8d4d51f35375717d9219c5 Author: Alan Garny Date: Mon Oct 2 15:45:00 2017 +0200 SimulationExperiment view: some work on adding log scales support to SimulationExperimentViewSimulationWidget::updatePlot() (#1412). commit 997640214c019a12675074c9bc8f84b36fb9cb26 Author: Alan Garny Date: Mon Oct 2 15:33:33 2017 +0200 GraphPanel widget: added the hasData() method (#1412). commit 39055e33dc85d338b0d9649feec5f31d55682c93 Author: David Brooks Date: Sun Oct 1 14:31:59 2017 +1300 Python: update Python script paths in build directory. commit e918d24141635d9ad7807f0d1e7f9a83eb0460c8 Author: David Brooks Date: Sun Oct 1 14:30:40 2017 +1300 Python: use a smaller font in IPython window. commit bad477edf9cf9889e98f3471809e022821fc0393 Author: David Brooks Date: Sat Sep 30 22:24:50 2017 +1300 Python: add our Python script directory to the system PATH. commit bb310df23311f6c73d5618d38dc0fced036c470f Author: David Brooks Date: Sat Sep 30 21:17:25 2017 +1300 Python: tweak command to set path to new Python executable. commit 06f5103715666c926a0b0be130f7945e0331bc46 Merge: e3122e8ea 5c88c9873 Author: David Brooks Date: Sat Sep 30 21:14:46 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit e3122e8eaa4df1f11a03bc6a0fb1715e3c7265a5 Author: David Brooks Date: Sat Sep 30 21:04:19 2017 +1300 Python: modify scripts to use the newly installed Python under Windows. commit e266bc9aa7e25b5b3afe642ffddc0654c39ce0b3 Author: David Brooks Date: Sat Sep 30 19:17:05 2017 +1300 Python: package Python into Windows installer. commit 6b75e3d33597b936bb325bd5d38ba2e27402b61e Author: David Brooks Date: Sat Sep 30 19:15:06 2017 +1300 Python: use `argparse` and update help text. commit 09c88b5d8e3f23833324b14f13301355832f8ad5 Author: David Brooks Date: Sat Sep 30 19:14:28 2017 +1300 Python: allow for spaces in path names. commit c9755f3e7165f405cb76efabdf0b44e4bd4402aa Author: David Brooks Date: Sat Sep 30 18:59:59 2017 +1300 Python: install Windows Python package installers as scripts instead of EXEs. commit 3ff7a67ecb01d28d1ba316b75a51ee7b0788081e Author: Alan Garny Date: Fri Sep 29 17:33:38 2017 +0200 GraphPanel widget: fixed an old problem with panning. commit 02a9e1865f9ddd32619c12d8317d3398683fd19c Author: Alan Garny Date: Fri Sep 29 17:27:57 2017 +0200 Some minor cleaning up. commit fa00edf9aa49c521c8212a5143fd5ecfebb6612d Author: Alan Garny Date: Fri Sep 29 15:19:17 2017 +0200 GraphPanel widget: can now nicely zoom in/out linear/log axes (#1412). commit a0713d3146023eeb9f60978d8f417509ef3f1240 Author: Alan Garny Date: Fri Sep 29 11:52:01 2017 +0200 GraphPanel widget: some minor refactoring (#1412). commit dce3daa33f45e911e2f609d3036aaf7ece69d52f Author: Alan Garny Date: Fri Sep 29 11:20:11 2017 +0200 Revert "Some minor improvement." This reverts commit e211d57ba9d93a52ea81ea85410f922901c43c47. commit e211d57ba9d93a52ea81ea85410f922901c43c47 Author: Alan Garny Date: Fri Sep 29 10:47:57 2017 +0200 Some minor improvement. commit 38ff64948f5a9119cc3c0fd89498ad343165c27f Author: Alan Garny Date: Fri Sep 29 10:21:40 2017 +0200 Some minor cleaning up. commit 7ba4ec50ebf5dffe55023c39c9a331e37a28924b Author: David Brooks Date: Fri Sep 29 17:13:24 2017 +1300 Python: update Python path utility for for Python 3 and Windows and remove activation script processing. commit d0da955888344833d0af34c04b19bb2c7f69f50c Author: David Brooks Date: Fri Sep 29 17:10:01 2017 +1300 Python: rename utility to set_python_path.py commit 3de3361829cd553ce84c2b0921547b3ad021a485 Author: David Brooks Date: Fri Sep 29 17:05:13 2017 +1300 Python: virtualenv-tools.py as downloaded from https://raw.githubusercontent.com/fireteam/virtualenv-tools/master/virtualenv_tools.py commit fadd64516c34f4de627e5b5d2941d47210ba27ef Author: Alan Garny Date: Thu Sep 28 18:27:52 2017 +0200 GraphPanel widget: can now nicely pan linear/log axes (#1412). commit 8cf64f4f6ff69f83e162e9fd93dac69b60f647f1 Author: Alan Garny Date: Thu Sep 28 16:06:52 2017 +0200 GraphPanel widget: added support for log scales in GraphPanelPlotWidget::updateActions() and GraphPanelPlotWidget::checkAxisValues() (#1412). commit 7f7adb17c2831f40a9bd341a1ce20e1aa5c036e1 Author: Alan Garny Date: Thu Sep 28 11:42:56 2017 +0200 GraphPanel widget: provide a way to update our default linear/log min/max X/Y values(#1412). commit da3abb6c8ada2223a5ae1892ef83c0688d7f4415 Author: Alan Garny Date: Thu Sep 28 11:29:08 2017 +0200 GraphPanel widget: rely on default linear/log min/max X/Y values(#1412). commit 81c586154a80764fa1b29789f7cc876016dcec58 Author: Alan Garny Date: Thu Sep 28 11:17:12 2017 +0200 Some minor cleaning up. commit 78028b1f78960328cc52a490cda35ee84f482d95 Merge: d3920a0ef 5c88c9873 Author: Alan Garny Date: Thu Sep 28 10:49:42 2017 +0200 Merge branch '\''master'\'' into issue1412. commit 5c88c9873635b5e4e2117c8421766b4dcf1250ca Author: Alan Garny Date: Thu Sep 28 10:47:43 2017 +0200 Some minor cleaning up [ci skip]. commit 95120aad1d5d41ea5ac10c5e5f267a6a9b17c847 Merge: 65e1241db acf12913e Author: Alan Garny Date: Thu Sep 28 10:41:18 2017 +0200 Some minor cleaning up and refactoring. commit acf12913e32b890da4ede61788977f44334284b0 Author: Alan Garny Date: Thu Sep 28 10:08:52 2017 +0200 Some minor cleaning up. commit bd3fd8204cc5d74e7d711955b85752ba57f8d1f8 Author: Alan Garny Date: Thu Sep 28 10:07:50 2017 +0200 Some minor cleaning up. commit 526b8d3678b5efdaaa797ce62347b2ce6070ae7d Author: Alan Garny Date: Thu Sep 28 10:07:08 2017 +0200 Some minor cleaning up. commit d3920a0ef341ef6a57c7b831c34c384d6381d92f Author: Alan Garny Date: Thu Sep 28 10:04:27 2017 +0200 Some minor cleaning up. commit aa1c3c0f7fb0d0cbb1cb40a51960ccd14d09ae69 Author: Alan Garny Date: Thu Sep 28 10:02:07 2017 +0200 Some minor cleaning up. commit b2f3ee1ca5334d6f9d395729defd7248d0ff9684 Author: Alan Garny Date: Thu Sep 28 09:41:07 2017 +0200 Some minor refactoring. commit e8f76313d5194800512db76bbb2efbca928f3e0c Author: Alan Garny Date: Thu Sep 28 09:40:44 2017 +0200 Some minor cleaning up. commit 3e75cea141347b250b2a6803193878d6a4b9e07b Author: Alan Garny Date: Thu Sep 28 09:36:49 2017 +0200 Some minor cleaning up. commit 5abb1add0dadf0b1bc515d41f7c617f63b23d6b4 Author: Alan Garny Date: Wed Sep 27 18:38:43 2017 +0200 Reverted commits 7486c95 and c3e5934 (#1412). I clearly didn’t think it through. The first commit made things quite worse when it comes to running some simulations. By default, the X axis would have a range of [0; 1000], but if the user was to specify a simulation that goes from 0 to 100,000, then the X axis would keep growing as the simulation would be run… which would make things unnecessarily slow and not graphically pleasant… commit c3e593444561c0b40925e15fda69020e26ac0d11 Author: Alan Garny Date: Wed Sep 27 18:31:37 2017 +0200 SimulationExperiment view: don'\''t update a graph plot'\''s axes when changing some of the simulation parameters (#1412). Indeed, this makes things unnecessarily difficult if we want to support log scales. commit 7486c957d4e4e99f854ed01037097057c7f401f4 Author: Alan Garny Date: Wed Sep 27 18:30:26 2017 +0200 SimulationExperiment view: don'\''t update a graph plot'\''s axes when changing some of the simulation parameters (#1412). Indeed, this makes things unnecessarily difficult if we want to support log scales. commit f772fdf4d944316dcdec355e8a85622996d38308 Author: Alan Garny Date: Wed Sep 27 17:33:25 2017 +0200 SimulationExperiment view: some work on supporting log scales (#1412). commit 1824e9669c884e82632a840b4b8adf914cabdc52 Author: Alan Garny Date: Wed Sep 27 17:02:46 2017 +0200 GraphPanel widget: added a default minimum axis value for log axes (#1412). commit 2474f2d662f18bd16cda17339360fbc46ce6e90a Author: Alan Garny Date: Wed Sep 27 16:44:20 2017 +0200 Some minor refactoring. commit 354d57fae67fe5b7248eba9fba4810b286f828f7 Author: Alan Garny Date: Wed Sep 27 16:42:48 2017 +0200 Some minor cleaning up. commit faf29bc1ee3793e61678a9282690cd4498496303 Author: Alan Garny Date: Wed Sep 27 16:16:51 2017 +0200 Some minor cleaning up. commit 4ff54bd0c23bef09d3076ff834054882bb1c1ec7 Author: Alan Garny Date: Wed Sep 27 16:04:06 2017 +0200 Some minor cleaning up. commit bfa0143731733c7cf7066792998cfc0e7b8566a8 Author: Alan Garny Date: Wed Sep 27 11:39:26 2017 +0200 GraphPanel widget: use the same axis optimisation algorithm for linear and logarithmic axes (#1412). We used to try to be too ‘clever’, but it wasn’t working (!!). Indeed, say that you had an axis with values between 14.896525 and 49.408874, then our old optimisation would tell us to use an axis range of [10; 60] while ideally it would be [14; 50], as for a linear axis. In the end, the algorithm for optimising linear axes seems to also work for logarithmic axes, so we are going to use that algorithm instead (unless we eventually find out it’s not working in some cases). commit 65e1241dba3cc095b4a6ac7a9e475068bfeaaef7 Merge: 9e0a5b131 2f74b8ecc Author: Alan Garny Date: Tue Sep 26 19:02:04 2017 +0200 SimulationExperiment view: make sure that the GUI is properly initialised when (re)loading a SED-ML file. commit 2f74b8ecc8d448f2e702b9165e90f0ea837fe27d Author: Alan Garny Date: Tue Sep 26 18:03:00 2017 +0200 SimulationExperiment view: make sure that the GUI is properly initialised when (re)loading a SED-ML file. The problem was with opening a SED-ML file with 3 graph panels, each with a graph. Indeed, the first graph panel was properly selected, so I thought I would change the colour of its graph by right clicking on its colour property, but the "Select Colour..." menu item wasn'\''t visible (in fact, other menu items were not properly enabled/disabled either). So, it’s not a new problem, but one that has been around since we have added support for SED-ML, and it was related to the fact that when adding graph panels (to get the right number of graph panels mentioned in the SED-ML file), we were adding them without asking for them to be active (as expected) since we wanted the first graph panel to remain the active one. The problem with this is that the graphs panel widget (associated with the first graph panel) wasn'\''t the current widget anymore. So, upon right clicking, the context menu wasn'\''t properly initialised since '\''crtProperty'\'' in SimulationExperimentViewInformationGraphsWidget::propertyEditorContextMe nu() was '\''null'\''... commit a70a2b8fa5b35068f6cce7cb81e9f6411ef15dea Author: Alan Garny Date: Tue Sep 26 17:35:03 2017 +0200 Some minor cleaning up. commit 9e0a5b1314c7f3fe73a888d581deb2950a7c6cd8 Merge: e5c77c7b1 8ae5c4246 Author: Alan Garny Date: Tue Sep 26 14:55:20 2017 +0200 GraphPanel widget: can now export a graph panel to various formats (e.g. PDF, PNG, SVG) (closes #1123). commit 8ae5c4246181dd337a1ef39241e3fafc85524300 Author: Alan Garny Date: Tue Sep 26 13:40:01 2017 +0200 Some minor cleaning up. commit 112d01fcc01d796e4b1457bcf7b878fae5153eef Author: Alan Garny Date: Tue Sep 26 13:39:44 2017 +0200 Slight update to our downloads and what is new pages (#1123). commit 7edc6fd60af73a496c4bd77a36386d480e695b37 Author: Alan Garny Date: Tue Sep 26 13:39:15 2017 +0200 GraphPanel widget: can now export a graph panel to various formats (e.g. PDF, SVG) (#1123). commit de6a20890123ea0f9e8ea2e51a2500381d6d3da7 Author: Alan Garny Date: Tue Sep 26 13:29:02 2017 +0200 GraphPanel widget: can now export a graph panel to various formats (e.g. PDF, SVG) (#1123). commit bb0eba84b698fab531e6cff1ae3d862f9676e5e0 Author: Alan Garny Date: Tue Sep 26 11:16:26 2017 +0200 Some minor cleaning up. commit 76be166f4681348647488e2a636bbbfb8ef03797 Author: Alan Garny Date: Tue Sep 26 09:34:12 2017 +0200 GraphPanel widget: some work on making it possible to export a graph panel to various formats (e.g. PDF, PostScript, SVG) (#1123). commit 6c3916ebc3d0e340505b31d25a6a9217e6a85bb7 Author: Alan Garny Date: Tue Sep 26 09:27:54 2017 +0200 Some minor cleaning up. commit e5c77c7b12323df549e5368919af4ff616f379d1 Merge: 931292af5 0c063d940 Author: Alan Garny Date: Mon Sep 25 17:40:59 2017 +0200 Added support for the alpha channel in the colours used to customise a graph. commit 0c063d940fd4a1293b131d1b847673fbcc5cd459 Author: Alan Garny Date: Mon Sep 25 16:51:52 2017 +0200 Slight update to our downloads pages. commit 7e3090d340e9b2c99766dd9168125868ea633150 Author: Alan Garny Date: Mon Sep 25 16:44:15 2017 +0200 Graph colour: added support for the alpha channel. commit b2f6af694803e86eddc072dd7bd49d81a9f599a2 Author: Alan Garny Date: Mon Sep 25 16:28:52 2017 +0200 Some minor cleaning up. commit 931292af5c74f975f03002a4215e98dcdd9fc887 Merge: c8910865b 0d1960014 Author: Alan Garny Date: Mon Sep 25 09:12:52 2017 +0200 New snapshot. commit 0d196001408131c720088037afe8003c8a496672 Author: Alan Garny Date: Mon Sep 25 08:30:03 2017 +0200 New snapshot. commit c8910865b4a2d1355998fcee8aff8ea6c11ccf66 Author: Alan Garny Date: Mon Sep 25 08:27:02 2017 +0200 Slight update to our third party libraries page [ci skip]. commit b6b535c0bfb33848a5cb5f1a9fb0eab944cbcb27 Merge: 7252c7d58 331ed0bb1 Author: Alan Garny Date: Mon Sep 25 08:24:18 2017 +0200 Ninja: pass arguments to `genericmake` onto ninja. commit 331ed0bb1ea442f40e462d230972af15da9bf314 Author: David Brooks Date: Mon Sep 25 13:59:26 2017 +1300 Ninja: pass arguments to `genericmake` onto ninja. commit 7252c7d58e9981f096d069a5e34cac8c0faa9068 Merge: ae152e437 5bf4be1a1 Author: Alan Garny Date: Fri Sep 22 18:42:10 2017 +0200 Simulation Experiment view: added the ability to customise a graph (closes #591). commit 5bf4be1a118c054ca78394c3055a5cdab98e07c1 Author: Alan Garny Date: Fri Sep 22 17:36:25 2017 +0200 Slight improvement to SimulationExperimentViewInformationGraphsWidget::updateGraphsInfo(). commit c8a6ebb0fadcd3eb0fff3abd8db14a190adf3cc2 Author: Alan Garny Date: Fri Sep 22 17:20:21 2017 +0200 Slight updates to our downloads and what is new pages (#591). commit 2e0e4f98471b5478de54045324f958795b614b0d Author: Alan Garny Date: Fri Sep 22 17:09:39 2017 +0200 Simulation Experiment view: ability to customise a graph (#591). commit 9760f1ac2cdf26f5b95934fea607063a4e3f01ad Author: Alan Garny Date: Fri Sep 22 17:02:28 2017 +0200 Simulation Experiment view: ability to customise a graph (#591). commit 9d6761fc901e6a8a5b853bfb29eea57d17f83a7c Author: Alan Garny Date: Fri Sep 22 16:57:27 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit bc0523e50da40e2d6cebffb5ee7cacaae8b6888e Author: Alan Garny Date: Fri Sep 22 16:45:18 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit 7a7662c66530503abe9a841c4864c740b9a5c429 Author: Alan Garny Date: Fri Sep 22 16:33:03 2017 +0200 Some minor cleaning up. commit 6ed524b4f49b9af24405e9d14d14e0c521ceb66e Author: Alan Garny Date: Fri Sep 22 16:28:05 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit ef5faba6d9baa3384978cdf5f986346c0180231c Author: Alan Garny Date: Fri Sep 22 16:25:42 2017 +0200 Some minor cleaning up. commit 5275caf7fc8b8c5f659e45c5f2146d52c4bf01cc Author: Alan Garny Date: Fri Sep 22 16:25:28 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit 2c2c4f1894f4e4b06627ab359f2e898e4454b67f Author: Alan Garny Date: Fri Sep 22 16:04:54 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit 3aa193271593c873601b98f7d9dd552561244848 Author: Alan Garny Date: Fri Sep 22 15:38:16 2017 +0200 PropertyEditor widget: simplified things a bit. commit 4fb2c008eb3cc99e25177bc43cd75f1702adb06c Author: Alan Garny Date: Fri Sep 22 14:14:06 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit 92bad5bbf563a904925904dac52cfd9830a39793 Author: Alan Garny Date: Fri Sep 22 14:02:07 2017 +0200 Simulation Experiment view: retrieving a graph'\''s properties from a SED-ML file (#591). commit 6f06661484154b353abfcf8ffa6004875da71810 Author: Alan Garny Date: Fri Sep 22 13:18:08 2017 +0200 Some minor cleaning up. commit cb0a7031dc36d89fc2f3f8f786036967a2fa0889 Author: Alan Garny Date: Fri Sep 22 12:51:35 2017 +0200 Simulation Experiment view: now check that the curve properties of a SED-ML file are indeed supported (#591). commit 3d331d0b51fc474f700ffd052fa050ae76eac2e0 Author: Alan Garny Date: Fri Sep 22 11:43:43 2017 +0200 Simulation Experiment view: now check that the curve properties of a SED-ML file are indeed supported (#591). commit 5f4034c11bdcfb18f71a902cf0a33b5f7a0ff4c1 Author: Alan Garny Date: Fri Sep 22 11:29:31 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported (#591). commit e251d1e2f8ca8895f705da35f2f1cb5eca75e4f9 Merge: eb1559fca ae152e437 Author: Alan Garny Date: Fri Sep 22 11:03:29 2017 +0200 Merge branch '\''master'\'' into issue591. commit ae152e43780474b90421eae9a550ab322fc66965 Merge: 6cdb6b495 faacff18c Author: Alan Garny Date: Fri Sep 22 10:59:16 2017 +0200 SED-ML support: some cleaning up, refactoring and minor improvements. commit faacff18c2e2ccd6117b0a1fe99325dfeb228a0d Author: Alan Garny Date: Fri Sep 22 10:23:54 2017 +0200 SED-ML support: improved the checking of a second simulation annotation. Indeed, we didn'\''t use to check everything. commit e71a35f9e80fa3449e79c23b19178e4b4baeae47 Author: Alan Garny Date: Fri Sep 22 10:22:20 2017 +0200 SED-ML support: whenever possible, prove the line/column of an issue. commit 377a4d84fb66b9cfcd9fc29317c80e24293b787b Author: Alan Garny Date: Fri Sep 22 10:21:40 2017 +0200 SED-ML support: some minor cleaning up. commit 2513621d194302891e45e2f62ffcace500813822 Author: Alan Garny Date: Fri Sep 22 10:20:17 2017 +0200 SED-ML support: some minor refactoring. commit b1c18591b53d6f89083954de672f18ae8f014be4 Author: Alan Garny Date: Fri Sep 22 10:17:47 2017 +0200 SED-ML support: slight improvement to some of our messages. commit 743777ab086127d7b372fd2c8ef32a5e5bd2bf1f Author: Alan Garny Date: Fri Sep 22 10:16:29 2017 +0200 SED-ML support: some minor cleaning up. commit eb1559fca4967c3a24c271275b32e1d866827de0 Author: Alan Garny Date: Thu Sep 21 20:04:43 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported (#591). commit d126c18a3ebf8930c5b82cf9fbfcb42b2d288765 Author: Alan Garny Date: Thu Sep 21 20:03:03 2017 +0200 Some minor cleaning up. commit 71dbf6f311483b425f0ecb0f7f77cb64cd66aeb9 Author: Alan Garny Date: Thu Sep 21 19:46:45 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported (#591). commit 1ce8ffc146b0bd10c1dc2823dfa34324a7d1ccbd Author: Alan Garny Date: Thu Sep 21 19:30:37 2017 +0200 SED-ML support: whenever possible, provide line/column information for unsupported issues. commit 382d222df4cea596c9561f694f73beba1521b08e Author: Alan Garny Date: Thu Sep 21 19:29:38 2017 +0200 Some minor cleaning up. commit 2c82f41f38f291950deef68b6bd69cfd6729c3e9 Author: Alan Garny Date: Thu Sep 21 19:02:07 2017 +0200 Some minor cleaning up. commit c0e15512530f4e74a74d8eca6129add2a8edc4aa Author: Alan Garny Date: Thu Sep 21 18:08:03 2017 +0200 Some minor cleaning up. commit 1f9d6be662b8fe087553d3acc36e816461e63d7b Author: Alan Garny Date: Thu Sep 21 17:35:17 2017 +0200 Some minor cleaning up. commit 978c9d5190247a83d7b23db229215a59f5b98552 Author: Alan Garny Date: Thu Sep 21 17:32:53 2017 +0200 Some minor cleaning up. commit 363373c675186b10a6ca6eec9b09d02b092c8d49 Author: Alan Garny Date: Thu Sep 21 17:24:43 2017 +0200 SED-ML support: some minor refactoring and improved our support for SED-ML files exported by OpenCOR. Regarding support, we didn’t use to check that the annotation of two simulation algorithms was the same. commit fd17cc51daab1523108723abf347d6b44ee92dda Author: Alan Garny Date: Thu Sep 21 16:59:28 2017 +0200 SED-ML support: some minor refactoring. commit efc25b1c82683f6894d455c260e907a62b6fc4ab Author: Alan Garny Date: Thu Sep 21 16:46:15 2017 +0200 Simulation Experiment view: can now select a colour to customise a graph(#591). commit 685d023ad6a9e99549ac75cd60397c0318efc319 Author: Alan Garny Date: Thu Sep 21 16:35:26 2017 +0200 Simulation Experiment view: can now select a colour to customise a graph(#591). commit 1d5ab741656bccb5b56ada5eecb40144ac9c0e2a Author: Alan Garny Date: Thu Sep 21 15:31:08 2017 +0200 Simulation Experiment view: can now export the line and symbol properties of a graph to SED-ML (#591). commit 3a01213720dcd1cf1c61c3dc60aea86485900167 Author: Alan Garny Date: Thu Sep 21 15:30:48 2017 +0200 PropertyEditor widget: make sure that a valid colour is provided (#591). commit 10ee82c07d08607930f4c3148031065e3b3fde67 Merge: 809e9532b 6cdb6b495 Author: Alan Garny Date: Thu Sep 21 15:06:03 2017 +0200 Merge branch '\''master'\'' into issue591. commit 6cdb6b495f256e44a7422043f049859be4175424 Merge: fef2d5a56 9e2acfe84 Author: Alan Garny Date: Thu Sep 21 14:28:54 2017 +0200 Various cleaning ups. commit 9e2acfe842d8546b6fa2645cdf2d519498027fda Author: Alan Garny Date: Thu Sep 21 13:54:24 2017 +0200 Some minor cleaning up. commit 809e9532bc74b9a094d6a6d5cb8aae9a730a563d Author: Alan Garny Date: Thu Sep 21 13:43:56 2017 +0200 Some minor cleaning up. commit 9f3133864fb276257edb30322ad06642082b24a5 Author: Alan Garny Date: Thu Sep 21 13:32:34 2017 +0200 SimulationExperiment view: now have two signals for letting people that a graph or several graphs have been updated. commit ef34e33f94fdd5becfb59b2b93bc24683e35a5ea Author: Alan Garny Date: Thu Sep 21 13:30:30 2017 +0200 Some minor cleaning up. commit e82190e0b3b0d6d3aec4e2c536a5e49591dabbc6 Author: Alan Garny Date: Thu Sep 21 13:21:39 2017 +0200 SimulationExperiment view: make sure that a solver'\''s properties are properly exported to SED-ML. The problem was with double values. For example, 1e-07 used to be exported as 9.9999999999999995e-08. Read back, the value was correctly set to 1e-07, so everything was kind of fine except for the fact that the SED-ML file gave the ‘wrong’ impression. commit 89aecd629071929a8b2e530820d9d6465911a44a Author: Alan Garny Date: Thu Sep 21 13:20:18 2017 +0200 SimulationExperiment view: make sure that a solver'\''s properties are properly exported to SED-ML. The problem was with double values. For example, 1e-07 used to be exported as 9.9999999999999995e-08. Read back, the value was correctly set to 1e-07, so everything was kind of fine except for the fact that the SED-ML file gave the ‘wrong’ impression. commit 07e8c9b8aae21a26b948697790c34e93235f7acd Author: Alan Garny Date: Thu Sep 21 13:17:45 2017 +0200 Some minor cleaning up. commit a5c07f26bb5608e8bb6fdb4a547d4ba097526a28 Author: Alan Garny Date: Thu Sep 21 13:10:39 2017 +0200 Some minor cleaning up. commit 2d8510d06fa5f687f09c3ca6c9f28566164ffc59 Author: Alan Garny Date: Thu Sep 21 11:55:57 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit e56f01d01c818bc3630c8fa6c9042618c874f33a Author: Alan Garny Date: Thu Sep 21 11:51:03 2017 +0200 GraphPanel widget: small fix to GraphPanelPlotWidget::optimiseAxis(). The problem was that if you have a graph with a log scale and some negative data, then to keep pressing F9 might result in the list of ticks being empty… commit 1e323bacf0e2e9d99e051e055e452671a1fda1be Author: Alan Garny Date: Thu Sep 21 11:49:31 2017 +0200 GraphPanel widget: provide a better cap and join style for the pen of a graph. Using the default cap and join styles, to increase to the width of the pen resulted in rather ugly rendering while it now looks smooth, which will be useful when supporting the customisation of graphs. commit 40c8ee80d43eb4428e9a55edca8dbe9520f20e7a Author: Alan Garny Date: Thu Sep 21 11:47:06 2017 +0200 Some minor cleaning up. commit 5fedd7c8d96b4b18dfdd64a9251cff568f33061d Author: Alan Garny Date: Thu Sep 21 11:46:17 2017 +0200 SED-ML support: consider `fatal` errors as errors indeed (!!). commit 3d6e6c65ee9226b63b9a1f51bbc9226d228b0c33 Author: Alan Garny Date: Thu Sep 21 11:44:17 2017 +0200 PropertyEditor widget: reorganisation, simplification and cleaning up of code. commit d08bc22207c45bf833dbb656d47e72560387ac8b Author: Alan Garny Date: Thu Sep 21 11:36:17 2017 +0200 Some minor cleaning up. commit 4810438c313a9856ee7ef5a02bbaca580f1e90c0 Author: Alan Garny Date: Thu Sep 21 11:31:22 2017 +0200 Some minor cleaning up. commit 6f3544967959d23565a9aab9f913fe47684d6497 Author: Alan Garny Date: Thu Sep 21 10:00:03 2017 +0200 Some minor cleaning up. commit af74ace71a363c52a9e86a1ce0af382c83385566 Author: Alan Garny Date: Thu Sep 21 09:33:13 2017 +0200 Some minor cleaning up. commit 4871c877be5bfbd5a8d8eb3c4e64188c39914d6b Author: Alan Garny Date: Thu Sep 21 08:59:42 2017 +0200 Simulation Experiment view: can now export the line and symbol properties of a graph to SED-ML (#591). commit a9b9d83d1b0094cd1e6898da7de2efe746683766 Merge: abf7705a8 6bda5e266 Author: David Brooks Date: Thu Sep 21 17:01:11 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 6bda5e2661297fcd5f2b225538abc1042e42e183 Author: David Brooks Date: Thu Sep 21 16:57:16 2017 +1200 Python: add typedef for std::bind result under gcc. commit abf7705a822040ca39af55121edb707dd37fd203 Author: David Brooks Date: Thu Sep 21 16:57:16 2017 +1200 Python: add typedef for std::bind result under gcc. commit 9f4fd4dcc2dde0453dd329b49231e012a3399d18 Author: Alan Garny Date: Wed Sep 20 19:07:39 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML (#591). commit b06f81a1dd2752bb794c3e02497942ad6a73bd7c Author: Alan Garny Date: Wed Sep 20 18:20:47 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML (#591). commit 7910941f12e63fbea9424b25ce802706458a9cb9 Merge: 4d91e040f fef2d5a56 Author: Alan Garny Date: Wed Sep 20 18:06:43 2017 +0200 Merge branch '\''master'\'' into issue591. commit fef2d5a56b4a955199c00107bbe370230ca88e4b Merge: 2e0e0aade 933fbae2e Author: Alan Garny Date: Wed Sep 20 18:05:49 2017 +0200 ZIP support: now use 755 for directories and 644 for files, if no file permissions are set (closes #1417). commit 4d91e040f1f1df6216c62b4665cb58359b6e6570 Merge: 8dd394156 2e0e0aade Author: Alan Garny Date: Wed Sep 20 17:21:37 2017 +0200 Merge branch '\''master'\'' into issue591. commit 2e0e0aade6297895040affa06e607a22422db2b2 Author: Alan Garny Date: Wed Sep 20 17:19:59 2017 +0200 Slight update to our prerequisites page following the release of Xcode 9.0 [ci skip]. commit 8dd39415665af4d1c82892dfc4bc12bd6746b1e6 Author: Alan Garny Date: Wed Sep 20 17:16:41 2017 +0200 Make sure that things build on Windows and Linux. commit d0ade9b72b02348255af7363ee676fccc8745eb2 Author: Alan Garny Date: Wed Sep 20 17:08:58 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML (#591). We need to improve our export of the style of a line/symbol since it’s not language agnostic (i.e. we can have “Solid” or “Solide” depending on whether OpenCOR is in English or in French). commit 518b013fe29ca0f72a32fc72d44c4439782f3193 Author: Alan Garny Date: Wed Sep 20 16:47:36 2017 +0200 SimulationExperiment view: some minor cleaning up with regards to the handling of properties. commit 933fbae2e267ae4dbc76b801570c7747109b7716 Author: Alan Garny Date: Wed Sep 20 14:06:14 2017 +0200 Slight updates to our downloads and what is new pages (#1417). commit d0f2f7b78a4c0bb090581a9e729179738e21ae9d Author: Alan Garny Date: Wed Sep 20 14:02:21 2017 +0200 ZIP support: use 755 for directories and 644 for files, if no file permissions are set (#1417). commit e6a8484a1c9853e70e2483d61a23cea7b2a08bd4 Merge: 9f8281f36 6ac458b2d Author: David Brooks Date: Wed Sep 20 14:48:03 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 6ac458b2dbe47be37febddf01472f61f90889102 Author: David Brooks Date: Wed Sep 20 14:47:28 2017 +1200 Python: get a clean build with MSVC 2014. commit 9f8281f365400ddda2ba21338802ea1c8192bd5a Merge: f21bddf50 14ebfb961 Author: David Brooks Date: Wed Sep 20 14:44:20 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 14ebfb96127ea34abe1728d0df6dcd7ecd929d3f Author: David Brooks Date: Wed Sep 20 11:14:22 2017 +1200 Python: Update pre-built packages for Windows. commit 803088caa86b5494ab151c9d18357c9c924f6ccd Author: David Brooks Date: Wed Sep 20 11:13:46 2017 +1200 Python: Get clean build with MSVC 2014 Update 3. commit f21bddf50790af0bacc9ca51bfc57453255bb05e Merge: f1bccaf04 7f1ccb301 Author: David Brooks Date: Wed Sep 20 10:08:02 2017 +1200 Merge branch '\''master'\'' into python_opt commit e91a308806be3c7de24a137adaca4723291fc41d Merge: 1969abaf1 7f1ccb301 Author: David Brooks Date: Wed Sep 20 10:07:47 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 68b4878085df347e602a6df71e921003134b11b4 Author: Alan Garny Date: Tue Sep 19 19:06:21 2017 +0200 Some minor cleaning up. commit 96727bd8b6251cb3e1a035cb83e27485f0e1e260 Author: Alan Garny Date: Tue Sep 19 19:03:28 2017 +0200 Some minor cleaning up. commit 914711ee46125d0fdd43d3e7d0754dfd27d984f2 Merge: 87a473167 7f1ccb301 Author: Alan Garny Date: Tue Sep 19 17:45:22 2017 +0200 Merge branch '\''master'\'' into issue591. commit 7f1ccb301f97455afdf28a925946c3d156ab54c7 Merge: dd79ce023 591940281 Author: Alan Garny Date: Tue Sep 19 17:41:11 2017 +0200 Qwt: don'\''t set `_USE_MATH_DEFINES` for MSVC as `qmath.h` does so. commit 87a4731673d62c95190fd58a99fc1feb3160470e Author: Alan Garny Date: Tue Sep 19 17:32:54 2017 +0200 SED-ML support: consider `fatal` errors as errors indeed (!!). commit 5919402813677e74017907a7c67c5b78da0f85e3 Author: Alan Garny Date: Tue Sep 19 14:14:20 2017 +0200 Generated new binaries for our Qwt package. commit edfc8049b3cf00760d198cf4d66cb874d421598e Author: Alan Garny Date: Tue Sep 19 14:00:12 2017 +0200 Get ready to rebuild our Qwt package. commit 88d8e923b3dc27593c04f7d591cc2fc575bafb92 Author: Alan Garny Date: Tue Sep 19 13:17:12 2017 +0200 SimulationExperiment view: properly handle SED-ML/COMBINE issues. commit e562361cc584ed82e11e02e988c98b74c4e1f331 Author: Alan Garny Date: Tue Sep 19 13:08:31 2017 +0200 Some minor cleaning up. commit 022a7974da677431fbb20b0a8acc5d51bf52de94 Author: Alan Garny Date: Tue Sep 19 11:38:12 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit 82aa34722eaf420d7359cf6291659e8210e56de9 Author: Alan Garny Date: Tue Sep 19 11:16:46 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit c54358ce65041a170729befab6aea66d40321027 Author: Alan Garny Date: Mon Sep 18 17:14:57 2017 +0200 Some minor cleaning up. commit 5ccb75b295b201e03706dea8f641357c9bbe1fa8 Merge: 437216ac6 dd79ce023 Author: Alan Garny Date: Mon Sep 18 15:14:02 2017 +0200 Merge branch '\''master'\'' into issue591. commit dd79ce02380e77f8332df708b2f44a4acdbfac40 Merge: 339a90690 7466a283e Author: Alan Garny Date: Mon Sep 18 15:12:21 2017 +0200 QScintilla widget: add line numbers (closes #1413). commit 7466a283eb2c4dad15f5d7712ed4fa05f29643c4 Author: Alan Garny Date: Mon Sep 18 14:13:49 2017 +0200 Slight updates to our downloads and what is new pages (#1413). commit 9f726098be1f7686934287d82805cb2525328537 Author: Alan Garny Date: Mon Sep 18 14:07:56 2017 +0200 QScintilla widget: have line numbers scale properly (#1413). commit af24b4e278b93823dd35872145d3d9ffe07f6e7f Author: Alan Garny Date: Mon Sep 18 11:06:11 2017 +0200 QScintilla widget: added line numbers (#1413). commit 437216ac627c54492cd50869dcd7b73aef9cfe79 Author: Alan Garny Date: Fri Sep 15 19:05:14 2017 +0200 Simulation Experiment view: allow for symbols not to be filled (#591). commit 65c897b0eea68cfd615de3cabfa308433ee92813 Author: Alan Garny Date: Fri Sep 15 18:50:17 2017 +0200 Simulation Experiment view: now display an icon that shows the actual colour of a colour property (#591). commit a9d39b08ecef55d563f4e1c7f00b103cd0d7d0bb Author: Alan Garny Date: Fri Sep 15 18:46:23 2017 +0200 Some minor cleaning up. commit cd0fce505d18f0ab33e12a4fafbd2139c74975d0 Author: Alan Garny Date: Fri Sep 15 18:45:09 2017 +0200 PropertyEditor widget: some minor reordering of things. commit 8912c616bd15ba611f0b4681c435fbba1d520aec Author: Alan Garny Date: Fri Sep 15 18:13:24 2017 +0200 Simulation Experiment view: can now specify the colour of a line, as well as the colour and filled colour of a symbol (#591). commit e09615bd809483a9da0668e477adfd11280e5407 Author: Alan Garny Date: Fri Sep 15 17:54:34 2017 +0200 PropertyEditor widget: some minor cleaning up. commit 89e42d93440a295379a508a947286fd18a44f619 Author: Alan Garny Date: Fri Sep 15 17:43:56 2017 +0200 Simulation Experiment view: the line width and symbol size are now '\''proper'\'' strictly positive double and integer properties (#591). commit d8700988729274a230c5107b26c904138ca285c7 Author: Alan Garny Date: Fri Sep 15 16:33:24 2017 +0200 PropertyEditor widget: some minor cleaning up. commit f1c353620ad8e2857eaa0d78fac277f2660da4b8 Author: Alan Garny Date: Fri Sep 15 16:13:28 2017 +0200 Simulation Experiment view: can now change the style and size of a graph symbol (#591). commit 16038a041e1331ec8a93059abacfb1a288a53ab7 Author: Alan Garny Date: Fri Sep 15 16:08:56 2017 +0200 Simulation Experiment view: can now change the style and size of a graph symbol (#591). commit b439b3e7224b5a2f92733a7e445552e7c6a51292 Author: Alan Garny Date: Fri Sep 15 15:50:27 2017 +0200 Simulation Experiment view: some minor cleaning up (#591). commit 641cefce8f6413e400c91bc7c451d458604c1805 Author: Alan Garny Date: Fri Sep 15 15:49:45 2017 +0200 Simulation Experiment view: removed the (symbol) filled property and replaced it with a size one (#591). commit 3d6e330a1e0c7b28e1624acba953f353f382523b Author: Alan Garny Date: Fri Sep 15 15:02:38 2017 +0200 Simulation Experiment view: renamed the graphPenUpdated signal to graphVisualUpdated (#591). commit 34238e7465fb12841359e9f25baf30a2e562788d Author: Alan Garny Date: Fri Sep 15 14:54:20 2017 +0200 Simulation Experiment view: reordered the properties of a graph line (#591). commit fdd7d1c442520a0dc72173323cd02615c6c67063 Author: Alan Garny Date: Fri Sep 15 14:18:58 2017 +0200 GraphPanel widget: small fix to GraphPanelPlotWidget::optimiseAxis(). The problem was that if you have a graph with a log scale and some negative data, then to keep pressing F9 might result in the list of ticks being empty… commit b1cfe0f789931c7510530b75a2641d71134ce438 Author: Alan Garny Date: Fri Sep 15 13:51:47 2017 +0200 Simulation Experiment view: have graph symbols filled by default (#591). commit 619ab2c2dc6c21911a22174f564533f91b12d2e4 Author: Alan Garny Date: Fri Sep 15 13:50:06 2017 +0200 Simulation Experiment view: some reworking of code (#591). Also added the horizontal line as a symbol, which I had missed earlier. commit f4cd5dc4d32c1f19c36d8a09f2425d5e76e59ad8 Author: Alan Garny Date: Fri Sep 15 13:33:59 2017 +0200 Simulation Experiment view: only replot a graph if its pen has been modified (#591). This is as opposed to update a graph, which resets the axes among other things. commit 3482931a70a728f85575389ff872d9ea69cca1b2 Author: Alan Garny Date: Fri Sep 15 13:21:20 2017 +0200 Simulation Experiment view: some minor reworking of code (#591). commit 396c55350bdfc1dc1554a16f037c61ff6100d8d6 Author: Alan Garny Date: Fri Sep 15 11:55:57 2017 +0200 Simulation Experiment view: can now change the style of a graph line (#591). commit f7e475dc129ffb04ffd22d4fc919d81565d6cb8c Author: Alan Garny Date: Fri Sep 15 11:48:58 2017 +0200 Simulation Experiment view: can now change the style of a graph line (#591). commit d655d6fa12a69bb59689e52fa0e7e87c42ed9fe5 Author: Alan Garny Date: Fri Sep 15 11:39:49 2017 +0200 Simulation Experiment view: can now change the style of a graph line (#591). commit d05cb600e493da5fceffec3a7e736e53e6ae80cf Merge: 0f738f94d 339a90690 Author: Alan Garny Date: Fri Sep 15 11:35:31 2017 +0200 Merge branch '\''master'\'' into issue591. commit 339a9069036336fb605771a49dada62058deba8d Author: Alan Garny Date: Fri Sep 15 11:34:11 2017 +0200 Slight update to our prerequisites page [ci skip]. commit 0f738f94d155c8853bf4a168ef9cd2f82f6d894c Author: Alan Garny Date: Fri Sep 15 10:58:58 2017 +0200 Some minor cleaning up. commit 57779f163271e5886ba613fdfcae350231799df2 Author: Alan Garny Date: Fri Sep 15 10:40:39 2017 +0200 Some minor cleaning up. commit ea4a78ebacfae3f7606dd1a71e2f59fac64982bb Author: Alan Garny Date: Fri Sep 15 10:26:11 2017 +0200 PropertyEditor widget: reverting some of our recent changes. commit f1bccaf04d13c87701c9742a5022978c2eb7092e Author: David Brooks Date: Fri Sep 15 12:15:59 2017 +1200 CVODE and IDA solver classes have been renamed. commit 43c41740e6fa5775c81337401d774eee04211b07 Merge: 5a5ce1561 1969abaf1 Author: David Brooks Date: Fri Sep 15 11:59:17 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 5a5ce1561bd04e8cc3a3088acd2948be31bbebcb Merge: 11d460ff0 ea140b8be Author: David Brooks Date: Fri Sep 15 11:59:07 2017 +1200 Merge branch '\''master'\'' into python_opt commit 1969abaf1412fd793ddf630e2c07c62db8a7ecba Merge: 52bd11ef4 ea140b8be Author: David Brooks Date: Fri Sep 15 11:58:37 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 11d460ff039ec283df198cf36cb3c9825a1040b3 Merge: 8e9a48d23 52bd11ef4 Author: David Brooks Date: Fri Sep 15 11:57:07 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 52bd11ef46b95aba5455e10fe02476921177aa7c Author: David Brooks Date: Fri Sep 15 11:55:11 2017 +1200 Python: clear simulation data when resetting a simulation. commit 0e2b9919eb1a3cabc11c6def500d603011ad31e0 Author: Alan Garny Date: Thu Sep 14 16:24:59 2017 +0200 Simulation Experiment view: properly distinguish between our root property and a line/symbol section property (#591). commit a804a2cce6ba0284e5c7da6e14104630fa48659d Author: Alan Garny Date: Thu Sep 14 15:29:50 2017 +0200 PropertyEditor widget: added a ListEditorWidget class. This will help us with creating an icon list. commit e3626331195473963955c3b2b1f1521f3ba9f550 Author: Alan Garny Date: Thu Sep 14 15:23:42 2017 +0200 PropertyEditor widget: renamed list editor classes/methods to string list editor. commit 4557f334501579e788eff97d35e12ce7644df1d2 Author: Alan Garny Date: Thu Sep 14 14:37:13 2017 +0200 Simulation Experiment view: can now change the width of a graph line (#591). commit 18cb536af7a3205e5f6ba4a8411e5c91bd11d423 Author: Alan Garny Date: Thu Sep 14 14:36:11 2017 +0200 GraphPanel widget: provide a better cap and join style for the pen of a graph. Using the default cap and join styles, to increase to the width of the pen resulted in rather ugly rendering while it now looks smooth. commit ebc722a36c2e78148e0a59620990ed848434cd3a Author: Alan Garny Date: Wed Sep 13 17:55:16 2017 +0200 Create Simulation Experiment view: don’t, anymore, change the colour of a graph based on the value of its model property (#591). commit fe21f8ea3368f19ac80cb7875497502a519b64aa Author: Alan Garny Date: Wed Sep 13 17:43:50 2017 +0200 Create Simulation Experiment view: updated SimulationExperimentViewInformationGraphsWidget::graphChanged() to account for the fact that a property may be under the line/symbol section (#591). commit 621774a35afb94923140f1256ae9cbffc6ea2916 Author: Alan Garny Date: Wed Sep 13 17:41:23 2017 +0200 Create Simulation Experiment view: added some properties for the customisation of a graph line and symbol (#591). commit 77451f743dceb4f3af96b6189cde493dfd31a073 Author: Alan Garny Date: Wed Sep 13 17:24:30 2017 +0200 Some minor cleaning up. commit ea140b8be74a5f451ea364d8abef1471e4dfe5f9 Author: Alan Garny Date: Wed Sep 13 15:25:55 2017 +0200 Make sure that ccache gets used, if available. This is not needed when building OpenCOR from the command line, but it is when building it using Qt Creator. commit 3db7de3c333184c208afb1070d11df316c1dec70 Merge: 7bc0dd043 b0e01687f Author: Alan Garny Date: Wed Sep 13 12:52:54 2017 +0200 New snapshot. commit b0e01687f7cbfd2990ca14bfdd44b16ca8ba2543 Author: Alan Garny Date: Wed Sep 13 11:28:54 2017 +0200 New snapshot. commit 7bc0dd0431a4ad4baef9fc39703ab4641f9e1365 Author: Alan Garny Date: Wed Sep 13 11:17:26 2017 +0200 Added clcache to our (optional) prerequisites [ci skip]. commit 8caf86f8e4d070a06d66992164ee683b916a0f83 Merge: 41627fd5a e7d789754 Author: Alan Garny Date: Wed Sep 13 01:02:49 2017 +0200 LLVM+Clang: upgraded to version 5.0.0 (closes #1407). commit e7d789754dd4cfbb190a14ec64dd3899580ca34a Author: Alan Garny Date: Tue Sep 12 23:55:04 2017 +0200 LLVM+Clang: updated our Windows packages (#1407). commit c4627e5f63697f6e115f1b8cd7d1b56acfccdfcf Author: Alan Garny Date: Tue Sep 12 19:07:03 2017 +0200 Oops, removed a bit too much in commit e883e0c! commit e883e0c431f79a6d027dace1ae28bb21a3bf16c7 Author: Alan Garny Date: Tue Sep 12 18:56:55 2017 +0200 LLVM+Clang: updated our Linux and macOS packages (#1407). commit 74ae8e0c0f501d4d5596559ace4ea21e7c40d6cd Author: Alan Garny Date: Tue Sep 12 13:10:37 2017 +0200 Slight update to our downloads page (#1407). commit 94e7afb2648e87205caaaf8b95290bc1042c5b51 Author: Alan Garny Date: Tue Sep 12 13:09:03 2017 +0200 Slight update to our third-party libraries page (#1407). commit 961c9951d4845a260e1d45db10ee286717aac35e Author: Alan Garny Date: Tue Sep 12 11:42:00 2017 +0200 LLVM+Clang: when it comes to tools, only build Clang (through DLLVMCLANG_BUILD_SHARED_LIB; #1407). commit 1c3bcc5540a7c9064903fb7145efec067886d378 Author: Alan Garny Date: Tue Sep 12 10:50:35 2017 +0200 LLVM+Clang: when it comes to tools, only build Clang (through DLLVMCLANG_BUILD_SHARED_LIB; #1407). commit 602819643b2a9d2d6af5d698ed5d7f845d086483 Author: Alan Garny Date: Mon Sep 11 18:57:14 2017 +0200 LLVM+Clang: make sure that we can build the package (#1407). commit be4c8da051e8cd9ee5653b9718501ea33e5f3d90 Merge: adb7ce8dd 41627fd5a Author: Alan Garny Date: Sat Sep 9 20:05:26 2017 +0200 Merge branch '\''master'\'' into issue1407. commit 41627fd5a35ec4019e72ffb77734c313451631be Merge: 15cc51f48 d716194ef Author: Alan Garny Date: Sat Sep 9 20:01:32 2017 +0200 GraphPanel widget: added support for log scales (closes #1299). commit adb7ce8dda01cf7740382c2867fe2b9263bb75ef Author: Alan Garny Date: Sat Sep 9 15:05:03 2017 +0200 LLVM+Clang: getting ready to rebuild the package (#1407). commit 297d62eb021bc55a779108237536ea446b615f66 Author: Alan Garny Date: Sat Sep 9 15:04:42 2017 +0200 LLVM+Clang: upgrading to version 5.0.0 (#1407). commit 15cc51f48325a5303017e72f65fcfa4af8c66031 Author: Alan Garny Date: Fri Sep 8 15:40:45 2017 +0200 CMake: account for the new CMP0068 policy [ci skip]. commit d716194ef0a418d19d40a890f6090514a3466c9d Author: Alan Garny Date: Fri Sep 8 13:57:36 2017 +0200 Some minor cleaning up (#1299). commit 91bd04c1594c26484fe21d0fcd53afb56e1bf306 Author: Alan Garny Date: Fri Sep 8 13:53:36 2017 +0200 Updated our Downloads and What is New pages (#1299). commit 17e06ece05166687186de53160a617721d4c2939 Author: Alan Garny Date: Fri Sep 8 13:48:19 2017 +0200 GraphPanel widget: make use of the log scale information found in a SED-ML file (#1299). commit 93221fef545b1a283c4e655b4eac3f42b9127669 Author: Alan Garny Date: Fri Sep 8 13:26:37 2017 +0200 Some minor cleaning up. commit 7f16a351c86ce51dbb2fa3698b1ad36f494b2683 Author: Alan Garny Date: Fri Sep 8 13:26:09 2017 +0200 GraphPanel widget: support SED-ML files with curves that have a log scale (#1299). commit 40ac49abe29e88285c1b4cd997280dc754a8a421 Author: Alan Garny Date: Fri Sep 8 12:40:12 2017 +0200 GraphPanel widget: export to SED-ML whether a graph panel should have logarithmic axes (#1299). commit 0ec01cab6a6447ad5af752b01b1c7f063ded6adf Author: Alan Garny Date: Fri Sep 8 11:46:10 2017 +0200 GraphPanel widget: added a way to set/get the logarithmic state of an axis (#1299). commit 72e7315ea0b79916eb53125aba9a6562f9297b12 Author: Alan Garny Date: Fri Sep 8 10:53:55 2017 +0200 GraphPanel widget: optimise our log axes (#1299). commit 4022d47287d99f28b21fa8edd614a7088c628275 Merge: b93a3ec42 c3ab4d0f3 Author: Alan Garny Date: Fri Sep 8 08:42:51 2017 +0200 Merge branch '\''master'\'' into issue1299. commit c3ab4d0f3e21062b01349dc5fd171b0018f304b9 Author: Alan Garny Date: Fri Sep 8 08:41:44 2017 +0200 Some minor cleaning up of our third-party libraries page [ci skip]. commit b93a3ec42161319923e0dd299ce0d36e0c8f4706 Author: Alan Garny Date: Thu Sep 7 18:41:00 2017 +0200 GraphPanel widget: reset our axes when enabling/disabling logarithmic axes (#1299). commit 333ec9ee4b36954cdaf46938ff0b922713f627b8 Author: Alan Garny Date: Thu Sep 7 17:18:47 2017 +0200 GraphPanel widget: some minor cleaning up. commit 4290794b99cb7a6dc64904f06c928e3763555af6 Author: Alan Garny Date: Thu Sep 7 17:07:50 2017 +0200 GraphPanel widget: slight improvements to our GraphPanelPlotWidget::setAxes() method. commit 523e2a425b00ea7d251527299c6a1e62527ad29d Author: Alan Garny Date: Thu Sep 7 16:19:46 2017 +0200 GraphPanel widget: reset axes when enabling/disabling logarithmic axes (#1299). commit 48a1e80c0bda3e847b5b2aba1e8f1fb103a6f004 Author: Alan Garny Date: Thu Sep 7 16:15:57 2017 +0200 GraphPanel widget: reordered our context menu (#1299). commit acec0a18d6b3a0aec308b2eedaf1f0a8b5628763 Author: Alan Garny Date: Thu Sep 7 16:13:39 2017 +0200 Slight updates to our Downloads and What is new pages. commit d9357feb21b0804a22c2e67514742a77515342ce Author: Alan Garny Date: Thu Sep 7 16:02:52 2017 +0200 GraphPanel widget: make sure that axes'\'' alignments are kept when adding a new graph panel. commit 4f357bed29aa602f752ef9dbf48e6c7116f0c6d3 Author: Alan Garny Date: Thu Sep 7 15:51:40 2017 +0200 GraphPanel widget: make sure that axes are updated if necessary. This actually fixes a small issue when having, for example, two graph panels and asking for the Y axis of them to be synchronised. Indeed, the Y axes didn’t get synchronised until we panned one of the graphs (for example). commit afa60058edb631308b780d0b665edb12781dadb3 Author: Alan Garny Date: Thu Sep 7 14:53:33 2017 +0200 Some minor cleaning up. commit af1da557f24d7bc7889fcb91e3ea897a93f03f52 Author: Alan Garny Date: Thu Sep 7 11:15:37 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis (#1299). commit 0fa6afa85395e8dd04a359a6a9a22a8f221ba1af Author: Alan Garny Date: Thu Sep 7 11:04:41 2017 +0200 GraphPanel widget: make sure that axis labels are properly formatted (#1299). Indeed, our previous implementation would render 1e-80 as 9.99999999999997e-81… commit d184c342ff27a2561f0710fcefd3c0fa880342c5 Author: Alan Garny Date: Thu Sep 7 11:03:42 2017 +0200 GraphPanel widget: make sure that axis labels are properly formatted (#1299). Indeed, our previous implementation would render 1e-80 as 9.99999999999997e-81… commit 99492e03b1ed105f061c9b3dab50f147b9df7f67 Author: Alan Garny Date: Thu Sep 7 10:48:19 2017 +0200 Don'\''t rely on qFuzzyIsNull() and qFuzzyCompare() anymore. Indeed, to use qFuzzyIsNull() (or something equivalent using qFuzzyCompare()) in GraphPanelPlotScaleDraw::label() resulted in small numbers (e.g. 1e-100) to be considered as zero, which is not what we want. Similarly, we simplified our SimulationData::isModified() method. commit c70b71a8f2e42be76d4927e53835ae4994bf80a9 Author: Alan Garny Date: Thu Sep 7 10:08:59 2017 +0200 Some minor cleaning up. commit 0bae223543440ffc7b06d09ce3457b7fb50d8541 Author: Alan Garny Date: Thu Sep 7 10:06:22 2017 +0200 Properly use qFuzzyIsNull() and qFuzzyCompare(). commit 43b0b5f4e3c7894556d20ae5676cde6b137a077f Author: Alan Garny Date: Thu Sep 7 10:05:56 2017 +0200 Some minor cleaning up. commit 796eae56d64dd1bba0fb62a02a3bbe7607fc09b9 Author: Alan Garny Date: Thu Sep 7 09:56:57 2017 +0200 Some minor cleaning up. commit fbd33cdde7d6bdabdeb211048d551ed3b6a8e400 Author: Alan Garny Date: Thu Sep 7 09:48:30 2017 +0200 Some minor cleaning up. commit 6f8d6033b6b66f575d23a630dfec4ceb501c3d8b Author: Alan Garny Date: Thu Sep 7 09:48:12 2017 +0200 Some minor cleaning up. commit a87f1db7eabb4864747d7cd5e1f1080ff8c22507 Author: Alan Garny Date: Thu Sep 7 09:47:19 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis (#1299). commit d1d462fad3f37f0fe6ee86d2d3e6a265daeaab85 Author: Alan Garny Date: Thu Sep 7 09:46:53 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis (#1299). commit 6540015420fcb1e9f0155dc970eb5967386f58b2 Author: Alan Garny Date: Thu Sep 7 09:44:53 2017 +0200 Some minor cleaning up. commit fb0497333179a07f7f7e5aad25e0b5f4e9c2dc4b Author: Alan Garny Date: Thu Sep 7 09:31:33 2017 +0200 Some minor cleaning up. commit 033e9a8bdb4e28c7c4cdf0b7bdee29bcabc2cdd5 Author: Alan Garny Date: Thu Sep 7 09:04:37 2017 +0200 GraphPanel widget: make sure that a plot gets redrawn when changing scaling of an axis (#1299). commit 1ae5e0065a346fa9f235b03602e3895d4a86fd6b Merge: 0372bd377 a71e4e8b4 Author: Alan Garny Date: Wed Sep 6 18:27:00 2017 +0200 Merge branch '\''master'\'' into issue1299. commit a71e4e8b49f548eb5ff3477ce0bc75d5433408b1 Merge: 8a00e30a0 ca515481b Author: Alan Garny Date: Wed Sep 6 18:25:44 2017 +0200 Solvers: reference CVODES/IDAS rather than CVODE/IDA (closes #1405). commit 0372bd3773fc539234c5ae7ee4994df4d0485247 Author: Alan Garny Date: Wed Sep 6 18:23:33 2017 +0200 GraphPanel widget: set the linear/log scale as requested (#1299). Still need to do much work to ensure that the log scales are actually sound. commit a92b9cbabe38cb1b8a9c4da73db8db07d9ad11a7 Author: Alan Garny Date: Wed Sep 6 18:20:34 2017 +0200 Some minor cleaning up. commit 287c32f72a622fac4144397223b77ab8a3aca898 Author: Alan Garny Date: Wed Sep 6 17:57:52 2017 +0200 GraphPanel widget: added context menu items for supporting log scales on axes (#1299). commit ca515481bab6d535a97e26811546100a58d50e9b Author: Alan Garny Date: Wed Sep 6 15:15:01 2017 +0200 Update our downloads page (#1405). commit 497d70c3da387c0339ea1a4af75cabd6bbc6fa85 Author: Alan Garny Date: Wed Sep 6 15:11:24 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA (#1405). commit 1587fb5dbf22f2a12c27fa9ad0de3b71e728b6ba Author: Alan Garny Date: Wed Sep 6 15:10:26 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA (#1405). commit c8529b25c54c47cf90d6f87fdf2ff3c73c850d80 Author: Alan Garny Date: Wed Sep 6 15:00:35 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA (#1405). commit 59ff6c8166304c9fd517668f113ca83a96099f52 Author: Alan Garny Date: Wed Sep 6 14:08:10 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA (#1405). commit 8a00e30a0aa0f325e83be6ddb579d88cb0fbdd04 Author: Alan Garny Date: Mon Sep 4 21:12:03 2017 +0200 Slight update to our Downloads page [ci skip]. commit 46bb911c20c017e8f7ddb68b9e71ccd256b7ba63 Merge: 61fae1dca 08ba1dd87 Author: Alan Garny Date: Mon Sep 4 21:02:43 2017 +0200 Travis CI: use Docker with Ubuntu 16.04 LTS (closes #1395). commit 08ba1dd875c82456a1e2034477eda2bed1890096 Author: Alan Garny Date: Mon Sep 4 20:04:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit dc20648987a7dd37f5f89c6bf6ac7252cc7e5d48 Author: Alan Garny Date: Mon Sep 4 19:09:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7002fc4d7f16e0dc0593c8852fb0f9bfbba03f52 Author: Alan Garny Date: Mon Sep 4 18:26:55 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit e01c93fe724bd5e159c937811bac73db8459a3ad Author: Alan Garny Date: Mon Sep 4 18:26:24 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 28a943073cb7a56179a7898ec7c4c53920ae2efe Author: Alan Garny Date: Mon Sep 4 18:17:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 9886f246774cb2c3074bd8412427a94b684fe0b9 Author: Alan Garny Date: Mon Sep 4 18:16:52 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit ecde3e9d590c9386663c6504b4e79edad6d4915b Author: Alan Garny Date: Mon Sep 4 18:11:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 109b30eda0f55e0f83fdeb30cd4add0e17ec7597 Author: Alan Garny Date: Mon Sep 4 18:06:06 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 3e700a2b0a8f0a700e37b23c369736f16d22ccdb Author: Alan Garny Date: Mon Sep 4 17:59:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit f05d18701af7f39d8b60c40c98bc0c6ffcd84611 Author: Alan Garny Date: Mon Sep 4 17:56:35 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 39bd581f24cebed6e1bde513bb19d6bcabcac070 Author: Alan Garny Date: Mon Sep 4 17:53:29 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2556095bd7a92b384440c7fed86836b066e6a882 Author: Alan Garny Date: Mon Sep 4 17:47:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8ef5a2fd40baf8987b27be56a9bfa1b6c7aaa90a Author: Alan Garny Date: Mon Sep 4 17:45:38 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 03c33d7cb3be4b19c1e5c6a0f408e206a090cdca Author: Alan Garny Date: Mon Sep 4 17:30:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7933541bd18a3b2b14e4eb96585191796149b2c4 Author: Alan Garny Date: Mon Sep 4 17:22:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2ae221448d1e28a85f2c8fd3873fd0f50324eef5 Author: Alan Garny Date: Mon Sep 4 17:13:28 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 5cc290537f343f4e79b9bc12a264521ea33ef6fe Author: Alan Garny Date: Mon Sep 4 17:12:16 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit f09bb501f034601f1beff0baa3477ffd788f4f83 Author: Alan Garny Date: Mon Sep 4 17:10:02 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 4874b6327a46de222c3604652471ec22fbd0efc9 Author: Alan Garny Date: Mon Sep 4 16:40:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit e38b57d6d22d134a010ed19a3351a03e662c4639 Author: Alan Garny Date: Mon Sep 4 16:36:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit f5c98f873bd1310357f023e4fcfda4a7c53d6d08 Author: Alan Garny Date: Mon Sep 4 15:52:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit b4aff3508a3178b0c598378873e53cc896bc4358 Merge: 3f5696a2c 61fae1dca Author: Alan Garny Date: Mon Sep 4 15:44:20 2017 +0200 Merge branch '\''master'\'' into issue1395. commit 61fae1dca2c5c2a0cd26394f907f1843dbb762b1 Merge: e079c8e8d d1d2c3efd Author: Alan Garny Date: Mon Sep 4 14:46:50 2017 +0200 Updated our copy of QtSingleApplication. commit d1d2c3efd1597f5bbd442b1d8753e87226ff7f6e Merge: 14886208c e079c8e8d Author: Alan Garny Date: Mon Sep 4 13:01:48 2017 +0200 Merge branch '\''master'\'' into cleaningup. commit e079c8e8dacf684bf82fa1dcf14813cddbeb4ca7 Merge: f809388fa 0ed362afe Author: Alan Garny Date: Mon Sep 4 12:38:39 2017 +0200 KaTeX: upgraded to version 0.8.3 (closes #1401). commit 0ed362afe74fa5a4d04e402b1ff96ff2b592dd8c Author: Alan Garny Date: Mon Sep 4 11:27:19 2017 +0200 Updated our downloads page (#1401). commit 14886208cf3c7f863974ad69fb0ad702df871fa8 Author: Alan Garny Date: Mon Sep 4 11:23:33 2017 +0200 Slight update to our copy of QtSingleApplication. commit e5d3ff327c4305d54f49e7d06e38843b7f3d5d6a Author: Alan Garny Date: Mon Sep 4 11:18:30 2017 +0200 Slight update to our copy of QtSingleApplication. commit 34728b3b068ad9c0c8780d6221282e1a03c1a6d1 Merge: 23eb5ddd6 f809388fa Author: Alan Garny Date: Mon Sep 4 10:46:57 2017 +0200 Merge branch '\''master'\'' into issue1401. commit 23eb5ddd698b4d62f419bc6c37c6967e75399e7d Author: Alan Garny Date: Mon Sep 4 10:46:10 2017 +0200 Upgraded KaTeX to version 0.8.3 (#1401). commit f809388faae02ca22cd953aa637168025608d8c3 Author: Alan Garny Date: Mon Sep 4 10:44:24 2017 +0200 Updated the Zinc version we are using [ci skip]. commit 777b9f358b28cb71422f744d97a01c518b9b7cb4 Author: Alan Garny Date: Mon Sep 4 10:36:02 2017 +0200 Updated the version of our copy of the Oxygen library [ci skip]. commit ba6757a625b8c5c7a50405df85a19a913d38886f Author: Alan Garny Date: Mon Sep 4 10:25:36 2017 +0200 Fixed the date of our latest snapshot [ci skip]. commit ec80b53438c39713b8cc97b3b5dfcc6917d4e935 Author: Alan Garny Date: Mon Sep 4 10:25:20 2017 +0200 Fixed the date of our latest snapshot [ci skip]. commit 8e9a48d238c043b01e6455018a13a792cfd25ff4 Author: David Brooks Date: Thu Aug 24 12:19:52 2017 +1200 Optimisation: Add icon for `constant with gradient`. commit 2b578a55db41ac129f7a0d038d75ee075c356380 Merge: a9bd5e074 5e81f5df9 Author: David Brooks Date: Wed Aug 16 16:56:26 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 5e81f5df95e634ea242cccd47714d57700ad14f3 Author: David Brooks Date: Wed Aug 16 16:55:19 2017 +1200 Python: remove unused message. commit a9bd5e074904b4ded7051c1ca5c5ff906e748f3b Merge: afc93df5b 8417b8500 Author: David Brooks Date: Wed Aug 16 16:52:15 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 8417b85009ec2ed4b74fca2d826def05ccc0bdb0 Author: David Brooks Date: Wed Aug 16 16:51:44 2017 +1200 Python: fix syntax error when non-debug build. commit afc93df5bafe3dcbf273233b6acb5fed02cd35dd Merge: a758a0725 57f3d7495 Author: David Brooks Date: Wed Aug 16 16:39:58 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 57f3d74955b051c3e780435ce0d4ae3203e643e1 Author: David Brooks Date: Wed Aug 16 16:33:52 2017 +1200 Python: use full pathname of a file when initialising a simulation. commit cd0fdc40c77d899462d85df8909220cc299f6418 Author: David Brooks Date: Wed Aug 16 16:32:02 2017 +1200 Python: throw an exception when a simulation fails. commit a758a0725139a49b580e0089a3f9d98618c8836e Author: David Brooks Date: Wed Aug 16 16:28:18 2017 +1200 Optimisation: use STAGGERED sensitivity analysis for IDAS (instead of SIMULTANEOUS). FUTURE: this should be user selectable for solvers. commit b314d7057deda57672c8e58eda54453f51cacff6 Merge: 2a98fc86d d8688bce7 Author: David Brooks Date: Mon Aug 14 22:38:44 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit d8688bce771a20e6426e954cf220e0af1ac23f18 Author: David Brooks Date: Mon Aug 14 22:34:14 2017 +1200 Python: tidy code. commit 9b1f6833c5908a7d17e0c1a704f3d387ba2f2af4 Author: David Brooks Date: Mon Aug 14 22:31:06 2017 +1200 Python: throw an error if we are unable to open a simulation. commit 7a8f55fd1f7b42575006ec3c23d5f76788754571 Author: David Brooks Date: Mon Aug 14 22:16:53 2017 +1200 Python: throw an error if there is an error when running a simulation. commit 2a98fc86d86271f4d6f8b5af35cacc7a2a46d80c Merge: 0876e8511 6aa6dbcfb Author: David Brooks Date: Sat Aug 12 18:12:25 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 6aa6dbcfb9b65d262d1ad6bfd941729b55332751 Merge: 49f66a3c0 398235f96 Author: David Brooks Date: Sat Aug 12 17:46:19 2017 +1200 Merge branch '\''datastore'\'' into pythonplugin commit 49f66a3c06d107c4a3b4d8ed0dde42bcf8a98927 Merge: 0c2218be4 e7811d440 Author: David Brooks Date: Sat Aug 12 17:45:18 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 398235f96c9aef760c700c5f82b1d126efa2a9c1 Author: David Brooks Date: Sat Aug 12 17:42:25 2017 +1200 DataStore: check we have a value'\''s array before referencing it... commit 0c2218be4fc7da05bd192a56ad65f5f2a0054b4b Author: David Brooks Date: Sat Aug 12 17:35:28 2017 +1200 Python: tidy code. commit 3f5696a2c7e43f36362287141b1704888505ae53 Author: Alan Garny Date: Sat Aug 12 01:56:50 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2fd1b17b48902b63bde825cf25f2bfddab87b3ce Author: Alan Garny Date: Sat Aug 12 01:56:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2591b1e354513dd49623b9eeff0de1273ab6c734 Author: Alan Garny Date: Sat Aug 12 01:50:10 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit b79b42532c2704735593085884d184e555edc025 Author: Alan Garny Date: Sat Aug 12 01:43:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7eb279eae3261fef912a17053314eb4e417a616c Author: Alan Garny Date: Sat Aug 12 01:22:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 01570b68e00fe9d964b3a684625765cefc795e55 Author: Alan Garny Date: Sat Aug 12 01:11:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 373ae90989de15a2b26f2b642b4d3e2f1afc0aa0 Merge: 9eba9eba5 e7811d440 Author: Alan Garny Date: Sat Aug 12 00:52:07 2017 +0200 Merge branch '\''master'\'' into issue1395. commit e7811d440cae62ebceffd398830ab2d223a036cb Merge: c6ed21632 1c828196d Author: Alan Garny Date: Sat Aug 12 00:50:09 2017 +0200 New snapshot. commit 9eba9eba561efe4436ab9305b9292460107610a9 Author: Alan Garny Date: Sat Aug 12 00:48:38 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7cc506912cd016edf066631d4be93e38659b4bbe Author: Alan Garny Date: Sat Aug 12 00:46:32 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 42380da3f7ae943f88ec4678088a945405dc4e25 Author: Alan Garny Date: Sat Aug 12 00:32:59 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7f614f9be024d84379c66ee55911ec00bf4cc84e Author: Alan Garny Date: Sat Aug 12 00:32:41 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 1a1369c5954199a632d189fb29ab53902c015733 Author: Alan Garny Date: Sat Aug 12 00:30:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 1c828196df151173365b670f3b0c2bf0de7b33fb Author: Alan Garny Date: Sat Aug 12 00:15:41 2017 +0200 Some minor cleaning up. commit 1ab33a37fc52a7bac2b6787df59107093006b02a Author: Alan Garny Date: Sat Aug 12 00:10:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8b35f02be4e996020b1b041f4f48529b3bf10233 Author: Alan Garny Date: Fri Aug 11 23:59:17 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit dea7591e7cc233de2fbc2a6b6bb26019544b62b1 Author: Alan Garny Date: Fri Aug 11 23:42:31 2017 +0200 Some minor cleaning up. commit 13529e6484d322598f6d174e489c2f616fa3f065 Author: Alan Garny Date: Fri Aug 11 23:39:03 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 1283db3dd7a27dc678091c3bb2957e11536adcfc Author: Alan Garny Date: Fri Aug 11 23:34:22 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 6fc2e84dccaf25ad2527870f9fc5b0437d3e1731 Author: Alan Garny Date: Fri Aug 11 23:23:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8d42a610a39c46e89254b9f5675f0631f759227b Author: Alan Garny Date: Fri Aug 11 23:10:57 2017 +0200 New snapshot. commit 320dd2953ed09c5bb36a6ab9628346e86a23175b Author: Alan Garny Date: Fri Aug 11 23:05:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 53c7c64fd5371fce3e215fc1fc35c83daaee1d60 Author: Alan Garny Date: Fri Aug 11 22:57:10 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 663e55adb9f0cfd739270b502353513547882368 Author: Alan Garny Date: Fri Aug 11 22:43:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2c3dc02298a0fa6ae2278b9a0e1034a7cfb725c4 Author: Alan Garny Date: Fri Aug 11 22:37:22 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit cc112543e36e79712fd0ab9034e2a318f745ec25 Author: Alan Garny Date: Fri Aug 11 22:31:23 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2532c38214244246fb57e20f1d54cedbbbba42a4 Author: Alan Garny Date: Fri Aug 11 22:26:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit ca270b8cff3900c62f239591083287f3bd91e6b4 Author: Alan Garny Date: Fri Aug 11 21:59:53 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8c11c4412990453e233bab74eb3f94e652c224f9 Author: Alan Garny Date: Fri Aug 11 21:23:09 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d57a7126780874db43771696a60a38473aee1be3 Author: Alan Garny Date: Fri Aug 11 21:16:42 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit b4f86f64cf91cfaa2b0ab35225e711fd76ec3e84 Author: Alan Garny Date: Fri Aug 11 21:09:16 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7d380c3b0e8e3e682276a48fab80feb8922cf560 Author: Alan Garny Date: Fri Aug 11 21:00:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 37076a4557b3f9637b1c04e344ff60992ac0b97e Author: Alan Garny Date: Fri Aug 11 20:55:50 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 9fe1dd70785462672216df423a40ea575b68ca5e Author: Alan Garny Date: Fri Aug 11 20:46:06 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 09f452ec7069839f9d7ecd6140096a8721241bb3 Author: Alan Garny Date: Fri Aug 11 20:43:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 6206d616870f6155c636536561c6719db21aee7a Author: Alan Garny Date: Fri Aug 11 20:17:30 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 2a38df39dfe3fddcd3e58fe5422c259de2cf2a09 Author: Alan Garny Date: Fri Aug 11 20:01:26 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d83659c7fad3a61c4fc758edbe6eda25d4e8682a Author: Alan Garny Date: Fri Aug 11 19:55:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 14fee0d517f8c16a6ff1919885a41551b35dabfe Author: Alan Garny Date: Fri Aug 11 19:52:09 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d646029e4fff05b81cc6956c329a8e009c92aee9 Author: Alan Garny Date: Fri Aug 11 19:48:24 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 3388ff62426303803c6931a35914fbfda3a6c286 Author: Alan Garny Date: Fri Aug 11 19:40:23 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 298f44f607cdb25542c6aa91716267163e570902 Author: Alan Garny Date: Fri Aug 11 17:54:35 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d9e6b04089befc943cd6b3727d29bec177676f57 Author: Alan Garny Date: Fri Aug 11 17:48:53 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 6b774ef44ca35ef99362ac0fd26659b56807633e Author: Alan Garny Date: Fri Aug 11 17:44:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8bc69bf8de45fa8ba61e7d8d0b62d45673290d91 Author: Alan Garny Date: Fri Aug 11 17:34:02 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 63957bdaac5b2481722477a3f70d0bec191f0be3 Author: Alan Garny Date: Fri Aug 11 17:25:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 84ef4419d01e1473e5b8015da35395a5c18ea272 Author: Alan Garny Date: Fri Aug 11 17:21:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 34bc2320fd8bcc3aa9372d887f546df955618843 Author: Alan Garny Date: Fri Aug 11 17:17:41 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit edf018cccb6f3c1098a0ce12373ba2474762e4a8 Author: Alan Garny Date: Fri Aug 11 17:14:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 4c25cfbc445310d1fadf2395e2f728aea815fb2f Author: Alan Garny Date: Fri Aug 11 17:09:25 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 3b576d15e52b1ff3203e7c9c587ad47ee8c5b970 Author: Alan Garny Date: Fri Aug 11 17:01:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d8424cb02b23c20c362ceae1a3e45bd5bd462a11 Author: Alan Garny Date: Fri Aug 11 16:58:45 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 5f88a78622437bfe4019c0cc08f646eacf21b3b2 Author: Alan Garny Date: Fri Aug 11 16:55:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit dbe5d58d56ad2b421a948478122df99309117550 Author: Alan Garny Date: Fri Aug 11 16:53:34 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d9df7a3143e7d80a7775bcfbf3412774a4f20b19 Author: Alan Garny Date: Fri Aug 11 16:52:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit f682be38f2a09182ba4221a0ce6750576039b56b Author: Alan Garny Date: Fri Aug 11 16:50:44 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8f6db3d456228a5096a409c2e9b8bc968983a8d6 Author: Alan Garny Date: Fri Aug 11 16:45:47 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit bd3f7ffaf70beb6627f368355b9f99c4ce0fdbee Author: Alan Garny Date: Fri Aug 11 16:40:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8651b193f82766c934d1bee76713b348d9863490 Author: Alan Garny Date: Fri Aug 11 16:39:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 77a82b4a1165095090c01640786eeceea3b3b69e Author: Alan Garny Date: Fri Aug 11 16:36:18 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 9efeea68c80a21e4b871aea9a79d95b9a4c8a3c0 Author: Alan Garny Date: Fri Aug 11 16:34:13 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 1206674c40d4e08b40ec2717de9596fdfe33ab1c Author: Alan Garny Date: Fri Aug 11 16:25:56 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 19dd2288ef29b31b5e4ab77c2a80eeec2a4a53ff Author: Alan Garny Date: Fri Aug 11 16:20:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 6063393c7664f47a3df419fbf94c786419df08c0 Author: Alan Garny Date: Fri Aug 11 16:20:32 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit ea95d44779ee7e39451c51927ab1b920bf2ba3ea Author: Alan Garny Date: Fri Aug 11 16:14:52 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 72c2a87968e266047fd469e01b33a4f326617e2e Author: Alan Garny Date: Fri Aug 11 16:05:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 71fb57921f5553e4bc93741d199e246efe5faedc Author: Alan Garny Date: Fri Aug 11 16:00:08 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit cc7f9a154867d7d49e89626e5e0b89a53289dcd7 Author: Alan Garny Date: Fri Aug 11 15:56:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit d6edbf349eb128e7f5dd498f30d11d23e058c9ad Author: Alan Garny Date: Fri Aug 11 15:52:12 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 7d8953de6736a7e554f19f4f86c1ca171e55637d Author: Alan Garny Date: Fri Aug 11 15:34:59 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 8e0040bbc2c6de6dc0ce1029b4cd5af0d4ba8ffb Author: Alan Garny Date: Fri Aug 11 15:31:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 51436fe1af209c932a96452fda03c6b41689e1a6 Merge: f74462de6 c6ed21632 Author: Alan Garny Date: Fri Aug 11 15:30:07 2017 +0200 Merge branch '\''master'\'' into issue1395. commit c6ed2163214fa6a865e7f7d193f625d922e3f53c Merge: 7eca30f11 4d44db873 Author: Alan Garny Date: Fri Aug 11 15:27:54 2017 +0200 Zinc package: upgraded to version 3.1.2 (#1393). commit f74462de683e6e6b5d422bb746f4a74dff92e3b8 Author: Alan Garny Date: Fri Aug 11 15:26:07 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit a57105dfd1ed8a4f7a43abbc9e42c07d2550aa18 Author: Alan Garny Date: Fri Aug 11 15:23:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit b4643adfd7bc86d4b6c1bcd6bf3c916ce9b61c50 Author: Alan Garny Date: Fri Aug 11 15:19:12 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit e0e01508ef08c77ad39792b377e561005a183838 Author: Alan Garny Date: Fri Aug 11 15:16:13 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 4d44db87301dd3f0c78063088ab72b849f26f1b8 Author: Alan Garny Date: Fri Aug 11 14:56:38 2017 +0200 Slight update to our Downloads page (#1393). commit 95cab3529f555c41b86d451a5d80552342fb4587 Author: Alan Garny Date: Fri Aug 11 14:47:32 2017 +0200 Reenabling the building of everything (#1393). commit f4eb8792c8e67302fa49e1e600c28c963ea06bf1 Author: Alan Garny Date: Fri Aug 11 14:46:55 2017 +0200 Zinc package: updated our Windows binaries (#1393). commit aaca3ef5fa10912651e828838f6539277d007399 Author: Alan Garny Date: Fri Aug 11 14:16:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS (#1395). commit 0d019f1c3be48258e47fe9d79cfa3b6191575e15 Author: Alan Garny Date: Fri Aug 11 13:00:51 2017 +0200 Zinc package: updated our Linux and macOS binaries (#1393). commit e87ba012fbd95ef6148f3c2f5b77c135853be781 Merge: 008ecd41c 7eca30f11 Author: Alan Garny Date: Fri Aug 11 12:58:12 2017 +0200 Merge branch '\''master'\'' into issue1393. commit 008ecd41c31d7f8541f779030c582de6359a454d Author: Alan Garny Date: Fri Aug 11 12:54:55 2017 +0200 Zinc package: updated the version to 3.1.2 (#1393). commit 851d49f4d39310d5e004d634eec30e06239f20f9 Author: Alan Garny Date: Fri Aug 11 12:54:27 2017 +0200 Get ready to build our Zinc package (#1393). commit 7eca30f1165133ea2c827a692c09cb74f5d4b9c4 Merge: a9c18e2df 145ce68a5 Author: Alan Garny Date: Fri Aug 11 11:51:48 2017 +0200 CSV data store: make sure that we can export to a (really) big CSV file (closes #1394). commit 57c2529f0cf2212a2b97a2a348b6d1ea901257d1 Author: Alan Garny Date: Fri Aug 11 11:48:55 2017 +0200 Reenabling the building of everything (#1393). commit f1adc51efbdf1fb321df833f4aba2ce8c5eea399 Author: Alan Garny Date: Fri Aug 11 11:47:39 2017 +0200 Zinc package: reenabling some tests (#1393). commit 8adb06546ca2a462402cc6f9300d9f9415221733 Author: Alan Garny Date: Fri Aug 11 11:34:47 2017 +0200 Get ready to build our Zinc package (#1393). commit 145ce68a583eabacf66f6405949d9e2fc3feff8c Author: Alan Garny Date: Fri Aug 11 11:25:53 2017 +0200 Slight updates to our downloads and what is new pages (#1394). commit 0fa63bdc4b21e83b7c2c490dbdb24f8a06ef32f9 Author: Alan Garny Date: Fri Aug 11 11:17:36 2017 +0200 CSV data store: make sure that we can export to a (really) big CSV file (#1394). commit a9c18e2df09ba36db512b0341f5a92c35783b291 Merge: d439eeca8 70e289499 Author: Alan Garny Date: Fri Aug 11 10:52:27 2017 +0200 Linux: rebuilt all our third-party libraries (closes #1391). commit 70e289499b12c63e7593f7a3f382d89b9c00848c Author: Alan Garny Date: Fri Aug 11 10:24:33 2017 +0200 Travis CI: temporarily (hopefully) disable building and running our tests on Linux (#1391). Indeed, to build our tests on Linux keeps failing. It might due to a discrepancy between Ubuntu 14.04 LTS (which is used on Travis CI) and Ubuntu 16.04 LTS, which we now use for building OpenCOR. commit ec7d4e6fcc272864dc8c1b95c88f2c53cac05b05 Author: Alan Garny Date: Fri Aug 11 10:07:38 2017 +0200 Travis CI: temporarily (hopefully) disable building and running our tests on Linux (#1391). Indeed, to build our tests on Linux keeps failing. It might due to a discrepancy between Ubuntu 14.04 LTS (which is used on Travis CI) and Ubuntu 16.04 LTS, which we now use for building OpenCOR. commit 32e5067b4bed035ce755289f3eaa0141437c2561 Author: Alan Garny Date: Fri Aug 11 10:00:52 2017 +0200 Some minor cleaning up [ci skip]. commit 920f991599ba23b12726b600f1c092cd165ebb0e Author: David Brooks Date: Fri Aug 11 19:09:41 2017 +1200 Python: allow for a DataStoreVariable not having a DataStoreArray allocated. commit ba21b4ad3815b5c9ca663ba0ead555b1027a48e0 Author: David Brooks Date: Fri Aug 11 19:07:31 2017 +1200 Python: update displayed values in simulation information widget when settings are changed in Python. commit 07c2d2675816838fcc23dcf69d40f760193ccdac Author: David Brooks Date: Fri Aug 11 16:25:11 2017 +1200 Python: specify dependency for DataStore plugin. commit cef211ea8c704df09f33ad67a3ba6f46c94d2739 Author: David Brooks Date: Fri Aug 11 16:24:15 2017 +1200 Python: support plugin now needs to directly link to the Python plugin. commit 55a8b640b16057dce9d4e4ae1f9b9fb040889dc2 Merge: 486d2922e 209230b2d Author: David Brooks Date: Fri Aug 11 15:26:41 2017 +1200 Merge branch '\''pythonplugin'\'' into valuedict commit 8f746aa9c5ba7f0c1a4473202dad085f2b6bcef7 Author: Alan Garny Date: Thu Aug 10 23:39:09 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 33e11e1b042bdf72f9728585f35188307dab27f2 Author: Alan Garny Date: Thu Aug 10 23:30:10 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 4b7fb761ad5d61c986a4075bcb14e4cdbe18d392 Author: Alan Garny Date: Thu Aug 10 23:11:26 2017 +0200 Some minor cleaning up. commit 57b0001aad6d919671618456dd042714b9e29d90 Author: Alan Garny Date: Thu Aug 10 21:38:38 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 227480cc387986e93c2b1a19b0163945f9de942e Author: Alan Garny Date: Thu Aug 10 21:37:10 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 6ee0d34d117609e4629f79664af5ff766419cbfa Author: Alan Garny Date: Thu Aug 10 21:30:25 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x (#1391). commit dabe8abec2e0081be47f7e948a2a652b084c7074 Author: Alan Garny Date: Thu Aug 10 21:24:53 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x (#1391). commit 6254f34a34eb892e23820d3fe00c5bfa6c1cf7c6 Author: Alan Garny Date: Thu Aug 10 21:16:27 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x (#1391). commit a7f7919b5a4388d5ea2bbff6dabf672ed49a52ce Author: Alan Garny Date: Thu Aug 10 19:58:59 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 95f67df5d9a1337d42d7364106f4b5c108b46d9f Author: Alan Garny Date: Thu Aug 10 19:58:07 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x (#1391). That really ought not to work! commit 0d46c88c5a54d0fd1f073f07fa13f4d33db42b6a Author: Alan Garny Date: Thu Aug 10 19:51:12 2017 +0200 Some minor cleaning up [ci skip]. commit bc2d8ed1390f7307fd139610cbee7247523d3b70 Author: Alan Garny Date: Thu Aug 10 19:50:06 2017 +0200 Ok, removing some RPath information on Linux wasn'\''t a good idea! (#1391) commit d1c454580f400c8280df503d9078e2632b6bae12 Author: Alan Garny Date: Thu Aug 10 19:48:38 2017 +0200 Trying to remove some RPath information on Linux (#1391). commit eb6b6180ee0164ac0cdb651eee949c97f810d9dc Author: Alan Garny Date: Thu Aug 10 19:44:56 2017 +0200 Trying to remove some RPath information on Linux (#1391). commit 893348195e1bec7dd4839354b32cd1430fff266c Author: Alan Garny Date: Thu Aug 10 19:41:13 2017 +0200 Trying to remove some RPath information on Linux (#1391). I get the feeling that it might not be needed… commit c3a3853489407ed26d17d0f744fc22c737c7eb3b Author: Alan Garny Date: Thu Aug 10 19:29:46 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 0d5c089b69c6a84bc8690b814bf293b5aa846007 Author: Alan Garny Date: Thu Aug 10 19:17:32 2017 +0200 Plugin tests: make sure that their external dependencies are set in the same way as for their corresponding plugins (#1391). Who know, that might explain why things don’t work on Travis CI?! commit 7e885952a749fa68992e66bd665b3d9bb4154ca0 Author: Alan Garny Date: Thu Aug 10 19:14:57 2017 +0200 Some minor cleaning up. commit fcbdbac21107b0a93e995515fcf884ab3883c3e8 Author: Alan Garny Date: Thu Aug 10 18:26:14 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 5c9d6c038868ae2397d3c23bee9749a55c8b5484 Author: Alan Garny Date: Thu Aug 10 18:23:37 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit d098a5d35b6c6d2541ac9b40679272c3986802c1 Author: Alan Garny Date: Thu Aug 10 18:20:56 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 942c13e9cc44609f6204ec18f0b1c640b5eeabbd Author: Alan Garny Date: Thu Aug 10 18:07:27 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 675bbf6bc4ccc6834ca98d195804e4ec6bfdaf57 Author: Alan Garny Date: Thu Aug 10 17:58:37 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit a10306d089a2b15f2c16c3715930661b910c278a Author: Alan Garny Date: Thu Aug 10 17:47:15 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit ce24071a112dafee03b30cbc9afdff823e7958bf Author: Alan Garny Date: Thu Aug 10 17:22:44 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit b1a9ba356bf9a328e2efe063d7220357ae45d7d7 Author: Alan Garny Date: Thu Aug 10 16:56:36 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 557325c5f1697620cce9d92bcad42f601fd13522 Author: Alan Garny Date: Thu Aug 10 16:45:59 2017 +0200 Reverted part of commit abacefc (oops!) (#1391) [ci skip]. commit 4fd001935b733b39a59388be82ecfa18059162a5 Author: Alan Garny Date: Thu Aug 10 16:40:11 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu (#1391). commit 894b963fa0cea1577fffd660d1b20b9b29a7579a Author: Alan Garny Date: Thu Aug 10 16:12:16 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=1 makes any difference (#1391). commit abacefc65ac60302d0125e1b380d9d92d11204e3 Author: Alan Garny Date: Thu Aug 10 15:48:42 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=0 makes any difference (#1391). commit 6d82c517d110b353e7dd9af3556ae587b9667010 Author: Alan Garny Date: Thu Aug 10 15:42:03 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=0 makes any difference (#1391). commit 87eb138b77baf0d2f05cdf5c2cd864b4257f8966 Author: Alan Garny Date: Thu Aug 10 15:08:07 2017 +0200 Travis CI: well, no Ubuntu 16.04 LTS available, so reverting to Ubuntu 14.04 LTS and see what we can do with it (#1391). See https://travis-ci.org/opencor/opencor/jobs/263072654, although we asked for the xenial distribution, Travis CI doesn’t know about it and therefore went for its current default distribution, which is trusty. commit d3ba50f7fa82e6000137ba207919f41d234c3b4b Author: Alan Garny Date: Thu Aug 10 14:52:57 2017 +0200 Updated our SBML and SED-ML API packages (#1391). Indeed, our SBML API package didn’t have support for bzip2, which we need (for our tests, if anything). Now, because our SED-ML API package depends on our SBML one, we also updated it just to be on the safe side. commit dbf0b5a64e89c2e36233c046410c85f7be36ac4f Author: Alan Garny Date: Thu Aug 10 14:48:08 2017 +0200 Travis CI: check whether there is an Ubuntu 16.04 LTS machine that we could use (#1391). Indeed, we now build everything on Ubuntu 16.04 LTS (Xenial), so to rely on Ubuntu 14.04 LTS (Trusty) is not really an option anymore (it breaks things; see https://travis-ci.org/opencor/opencor/jobs/263037249). commit 0a3a16d677dbdb8d5a466366d0cb2a5fcdcfa58c Author: Alan Garny Date: Thu Aug 10 14:18:08 2017 +0200 Zinc package: slight update to our tests until we formally upgrade to Zinc 3.1.2 (#1391) [ci skip]. commit 8e2e9234fd490dc982540671a7a13a964d1445d4 Author: Alan Garny Date: Thu Aug 10 13:36:29 2017 +0200 Some minor cleaning up (#1391) [ci skip]. commit d623ac928b642103fc02c80c58f94fdff14e7ef2 Author: Alan Garny Date: Thu Aug 10 13:01:23 2017 +0200 Updated our QtWebKit package (#1391). commit 346453d4e7c0fcdc140531329c7ad516ced4827b Merge: 4d824deba e0798651b Author: Alan Garny Date: Thu Aug 10 11:00:53 2017 +0200 Merge pull request #3 from dbrnz/issue1391. commit e0798651bb74b76c1d3c84dd9cc5d8bb2a586097 Author: David Brooks Date: Thu Aug 10 20:54:31 2017 +1200 Linux: rebuild BioSignalML libraries for GCC 5.4 (#1391) commit 209230b2d009be47876ab3e9274eb15bf5ad9df6 Author: David Brooks Date: Thu Aug 10 20:48:54 2017 +1200 Python: update packages for GCC 5.4 (#1391) commit 805d8c8b5b4722b754207f582106b92f9db6e2cc Author: David Brooks Date: Thu Aug 10 20:47:39 2017 +1200 Python: don'\''t check whether the memory associated with a simulation can be allocated (#1389) commit bc4035234811057f9598fe0bf174572977c0760d Author: David Brooks Date: Thu Aug 10 20:45:37 2017 +1200 Python: other plugins in fact depend on Python packages having been installed. commit 4d824deba41306652229aa4c5faef2fb315c34d0 Author: Alan Garny Date: Thu Aug 10 10:36:14 2017 +0200 QtWebKit package: make sure that our generated CMake files are properly patched (#1391). commit 389c232b2b88a50ea59ce890625af543376ead90 Author: David Brooks Date: Thu Aug 10 14:20:19 2017 +1200 Python: tweak name of PythonQt API build. commit a2a1b85496f1b3670a9be14bd04a9cc4f885bf2c Author: David Brooks Date: Thu Aug 10 14:19:36 2017 +1200 Python: dependencies of plugins using Python headers are on package builds, not the Python plugins. commit 27cddfef5fe7dc5dabc68845c067c8b428c06add Author: David Brooks Date: Thu Aug 10 13:58:56 2017 +1200 Linux: rebuild BioSignalML libraries for GCC 5.5 (#1391). commit 9cc1901510221d81433aae32faeea9ec872d5ba7 Author: Alan Garny Date: Wed Aug 9 19:48:25 2017 +0200 Updated our LLVM+Clang package (#1391). commit 00d64b9f3aed180c23a50b03dbb31a57267f3787 Author: Alan Garny Date: Wed Aug 9 17:35:22 2017 +0200 Updated our Zinc package (#1391). commit c9ae45eb7a4f0d24cf36509b659977e8232e673e Author: Alan Garny Date: Wed Aug 9 16:40:36 2017 +0200 Updated our QScintilla and Qwt packages (#1391). commit cde844ee6d4da819265da5995f4f8a1ad54af9ac Author: Alan Garny Date: Wed Aug 9 16:31:41 2017 +0200 Updated our SUNDIALS and zlib packages (#1391). commit e2f1d3a3adf55d01e4decb8e84bd4ff26b68ff34 Author: Alan Garny Date: Wed Aug 9 16:25:39 2017 +0200 Updated our OpenSSL package (#1391). commit 4225d712117a0c099574fd8c74e1b4624d704709 Author: Alan Garny Date: Wed Aug 9 16:20:47 2017 +0200 Updated our LibXDiff and OAuth packages (#1391). commit e4ca80b4d6008709b1eb789602bf7e10da507c27 Author: Alan Garny Date: Wed Aug 9 16:13:41 2017 +0200 Updated our libigt2 package (#1391). commit 7ff0ff0a775d01d4a4febb9851a45f020976590f Author: Alan Garny Date: Wed Aug 9 16:01:37 2017 +0200 Temporarily disable BioSignalML-related plugins (#1391). commit 194aa77968cc2ff21d2b3b9cdffb6ab56c76566f Author: Alan Garny Date: Wed Aug 9 15:54:29 2017 +0200 Updated our SED-ML API package (#1391). commit 23ebd4b1f35e4114708f4937aa5f8c1ba8a87b87 Author: Alan Garny Date: Wed Aug 9 15:52:23 2017 +0200 Updated our SBML API package (#1391). commit f250a9f978b932de4b28b55491a9fffcaf155fcb Author: Alan Garny Date: Wed Aug 9 15:47:28 2017 +0200 Updated our CellML API package (#1391). commit ecda324f7020ca18fc60d211ad2610242a7f6c15 Author: Alan Garny Date: Wed Aug 9 15:28:08 2017 +0200 Updated our QtWebKit package (#1391). commit 4d2032c9b6a46e3fff24ef17e9fca7fbc1578a85 Merge: 81b4299f9 d439eeca8 Author: Alan Garny Date: Wed Aug 9 13:59:09 2017 +0200 Merge branch '\''master'\'' into issue1391. commit d439eeca8c076c646ff2302825511adb35167a22 Author: Alan Garny Date: Wed Aug 9 13:56:53 2017 +0200 Oxygen: removed a file (not part of Oxygen 5.36.0) [ci skip]. commit 81b4299f9612284c9f846aecabe9ff897d6f1212 Merge: 93af7a813 2d195d01c Author: Alan Garny Date: Wed Aug 9 13:06:05 2017 +0200 Merge branch '\''master'\'' into issue1391. commit 93af7a81363d18944c834d9b5e7d44800e4d381e Author: Alan Garny Date: Wed Aug 9 13:04:41 2017 +0200 Slight update to our QtWebKit readme file (#1391). commit 2d747ba0c7c97d329ade10f17622d6d1f8dc0547 Author: Alan Garny Date: Wed Aug 9 11:42:17 2017 +0200 Updated our Mesa package (#1391). commit 2d195d01c3525fdc12502cff9954ac7c05cee36e Author: Alan Garny Date: Wed Aug 9 10:50:09 2017 +0200 Oxygen: removed a file (not part of Oxygen 5.36.0) [ci skip]. commit 8ae9f310e07fb87be9b8481b484028d94cee2844 Author: Alan Garny Date: Wed Aug 9 10:43:55 2017 +0200 Slight update to our third-party page [ci skip]. commit 5a57f416be82b7d84fefefde4811303b2e0fc734 Author: Alan Garny Date: Wed Aug 9 09:49:12 2017 +0200 cmake/patchcmake.c: make sure it builds fine using GCC/G++ 5.x (#1391). commit c9ae35549edee92a3de856865b62a03d9d7d6bc7 Author: Alan Garny Date: Wed Aug 9 09:23:46 2017 +0200 CMake: USE_PREBUILT_MESA_PACKAGE should only be available on Linux. commit 486d2922ea682489a952c246bec803ee9df2ff37 Author: David Brooks Date: Wed Aug 9 13:35:08 2017 +1200 WIP: track data store variable in a values dictionary. commit f4bb5c35a8305198054e01fa2d1252e59bdf0629 Merge: 938bf1042 df859dc79 Author: Alan Garny Date: Tue Aug 8 23:31:47 2017 +0200 Simulation Experiment view: don'\''t check whether the memory associated with a simulation can be allocated (closes #1389). commit df859dc79a8fc2ec5461da9d850ce0b8b63606c1 Author: Alan Garny Date: Tue Aug 8 18:32:49 2017 +0200 Slight update to our What is New page (#1389). commit 96da0dae0be7720c6e9b59bed52b556ea8ae522c Author: Alan Garny Date: Tue Aug 8 18:17:11 2017 +0200 Slight update to our downloads page (#1389). commit b01fe2d2bbd1b58e608ec91d14195a65290d6b1b Author: Alan Garny Date: Tue Aug 8 18:15:35 2017 +0200 Simulation Experiment view: don'\''t check whether the memory associated with a simulation can be allocated (#1389). commit 938bf1042f2108602b1c9fa647920db60cc3fde7 Merge: e035a2897 d846b5234 Author: Alan Garny Date: Tue Aug 8 16:59:34 2017 +0200 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file (closes #1385). commit d846b5234fa1554ae693056fff0279d8f5b485a9 Author: Alan Garny Date: Tue Aug 8 16:14:10 2017 +0200 Reverting our File Handling interface (#1385). commit 51058d92c97a47a4a48d81a9868cda4e6268f11e Author: Alan Garny Date: Tue Aug 8 16:04:36 2017 +0200 Updated our downloads pages (#1385). commit 2a6a1f0a193cf3204c55ac99d846d31f46f62e47 Author: Alan Garny Date: Tue Aug 8 16:02:48 2017 +0200 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file (#1385). commit ca51ce363dae89354845af96eb0c857d5fa86654 Author: Alan Garny Date: Tue Aug 8 14:42:21 2017 +0200 Some minor cleaning up. commit c933d94d977f23c7c31876f204a554e1df7b4483 Author: Alan Garny Date: Tue Aug 8 14:08:19 2017 +0200 Reverting our File Handling interface (#1385). commit 0876e8511b7bbc7f76b09326774d75a936715acb Author: David Brooks Date: Tue Aug 8 19:17:27 2017 +1200 Optimisation: improve initialisation and error checking. commit b5d80624186c864e9e0a423ce3c2b563cff969bd Merge: 7d3a186e6 2cfee0118 Author: David Brooks Date: Tue Aug 8 19:03:24 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 2cfee01183d206fc2088bcbaca77dc17afdb2731 Author: David Brooks Date: Tue Aug 8 18:46:40 2017 +1200 Python: return result of simulation run. commit 9091fb9a57ed99ca9c9bc1fab74b1659c2ab893e Author: David Brooks Date: Tue Aug 8 09:35:14 2017 +1200 Python: wait for a simulation to finish running before returning from `run()`. commit 7d3a186e6c3e3552e9c000d07788a321cbb69490 Merge: ceca9c5d0 3951f830a Author: David Brooks Date: Tue Aug 8 09:37:02 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 3951f830a7232a819c67c8cbc5f694bb94b84a96 Author: David Brooks Date: Tue Aug 8 09:35:14 2017 +1200 Python: wait for a simulation to finish running before returning from `run()`. commit ceca9c5d09cc2bed28c591465dc44b65afc9e061 Merge: f04837bbd c5affd7e4 Author: David Brooks Date: Mon Aug 7 15:24:00 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit c5affd7e433a1f588c1c4422964f9014258fd375 Merge: 50fb68700 e035a2897 Author: David Brooks Date: Mon Aug 7 15:22:59 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit f04837bbd97ba66fbba0dc912beaed0a154014aa Author: David Brooks Date: Mon Aug 7 15:21:16 2017 +1200 Optimisation: reinitialise CVode sensitivity analysis when reinitialising CVode. commit 3bb6770eb9cb802b841163182871460d3a38cd70 Author: David Brooks Date: Mon Aug 7 15:20:16 2017 +1200 Optimisation: enable and use IDA sensitivity analysis. commit e035a289774080e79cf7c0e3361343275422a1d2 Merge: 0c997886e f092875c3 Author: Alan Garny Date: Sun Aug 6 11:06:05 2017 -0300 make sure that we can find the plugin '\''xcb'\'' on some Linux machines (closes #1383). commit f092875c3311bb3459fef9be4e66d7501ab4b28f Author: Alan Garny Date: Sun Aug 6 10:25:30 2017 -0300 Slight update to our Linux prerequisites (#1383). commit 897bfd82d51769cbb04fb38cbb7ff92e8eb88d37 Author: Alan Garny Date: Fri Aug 4 22:19:28 2017 -0300 Dropping our support for Ubuntu 14.04 LTS to 15.10 (#1383). commit c3994736dca01d613264ce1ccb384f399b7a08b8 Author: David Brooks Date: Fri Aug 4 21:30:50 2017 +1200 Optimisation: default action is to calculate gradients. commit 428488cebc12364396ac1140e32c4146d0745fcc Author: David Brooks Date: Fri Aug 4 20:30:41 2017 +1200 Optimisation: allow Python to set gradients'\'' calculation flag and run sensitivity analysis simulations. commit 61e6081144c3b68fbf7874b1324864488a024205 Author: David Brooks Date: Fri Aug 4 13:56:27 2017 +1200 Optimisation: only store gradients if we have a gradients'\'' data store... commit bb7c5da277045a605e72e0cb2bbdd457d70459db Author: David Brooks Date: Fri Aug 4 13:54:56 2017 +1200 Optimisation: gradients are of state variables wrt constant parameters. commit 3e99107a9583f1271e80c2493ffcb092f22cfa69 Merge: 2d3f8c2f2 50fb68700 Author: David Brooks Date: Thu Aug 3 17:29:45 2017 +1200 Merge branch '\''pythonplugin'\'' into python_opt commit 50fb68700c98c04db6929b7392ec378447ea4b77 Author: David Brooks Date: Thu Aug 3 17:29:09 2017 +1200 Python: tidy simulation support wrapping code. commit f643efb8f8693f71026ea706cf4eef119e224683 Author: David Brooks Date: Thu Aug 3 17:28:42 2017 +1200 Python: a DataStore might not have a `voi`. commit a24eea98feb034aff9fa2ab5c787c961372526e2 Merge: d77bf442d 0c997886e Author: David Brooks Date: Thu Aug 3 17:23:18 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 2d3f8c2f2e58f48e195b68ff63e54ffb9f922438 Author: David Brooks Date: Thu Aug 3 17:18:48 2017 +1200 Optimisation: save gradient values and make available to Python. commit f052d9608e58242daeeec76a301bd026d1642398 Author: David Brooks Date: Thu Aug 3 15:49:51 2017 +1200 Optimisation: initialise array pointer... commit db7982b8c517854cd60657757586959127abddb4 Author: David Brooks Date: Thu Aug 3 15:05:23 2017 +1200 Optimisation: use the sensitivity analysis solver. commit 8662978015a6c4b7eebcead477c80150b3f328a6 Author: David Brooks Date: Thu Aug 3 15:04:49 2017 +1200 Optimisation: allocate array and data store to hold sensitivity gradients. commit 856fd63fb8410db1f5057e8c5801d46d045490c2 Author: David Brooks Date: Thu Aug 3 15:03:49 2017 +1200 Optimisation: tidy solver interface initialisation code. commit 641f2c7f62de9b79f087422b7ef89a9c23a1f038 Author: Alan Garny Date: Wed Aug 2 22:26:58 2017 -0300 Now require GCC/G++ 5.x on Linux (#1383). commit 3892c4a246fc6fed78a7f82c228b42aadc1999b6 Author: Alan Garny Date: Wed Aug 2 14:39:08 2017 -0300 Now require GCC/G++ 5.x on Linux (#1383). commit bcf98cbb55d7527a3c7a80c9c420176e58aea8f5 Author: Alan Garny Date: Wed Aug 2 14:09:20 2017 -0300 Revert "Make sure that we can find the plugin "xcb" on some Linux machines (#1383)." This reverts commit 13f50808d06288818c9921b17350221e801f2a15. commit d37b5d16b5f20fd1111e447c2618ec1d90fb1aba Author: Alan Garny Date: Wed Aug 2 11:59:42 2017 -0300 Updated our downloads pages (#1383). commit 13f50808d06288818c9921b17350221e801f2a15 Author: Alan Garny Date: Wed Aug 2 11:50:20 2017 -0300 Make sure that we can find the plugin "xcb" on some Linux machines (#1383). commit b24dd5e16c32d1ebb431186f456f88fa62e8a488 Author: Alan Garny Date: Wed Aug 2 11:46:20 2017 -0300 Revert "Updated our known limitations page (#1383)." This reverts commit 9ea4a2357f7124e4ab3a0680c988eebf9950d99d. commit b588ca4aaf051fbc9021a7a37ee3c838a32f3c64 Author: Alan Garny Date: Wed Aug 2 11:46:16 2017 -0300 Revert "Updated our downloads pages (#1385)." This reverts commit 0a407a5af5931c56ac87209bc87eef08bed93fea. commit 7c0f1d8b0712b1fa1367292ae71261021a45c119 Author: Alan Garny Date: Wed Aug 2 11:45:59 2017 -0300 Revert "Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file (#1385)." This reverts commit 85224532d79ccd1df5e21e3448fd47a4da8679ab. commit 9ea4a2357f7124e4ab3a0680c988eebf9950d99d Author: Alan Garny Date: Tue Aug 1 15:41:22 2017 -0300 Updated our known limitations page (#1383). commit 0a407a5af5931c56ac87209bc87eef08bed93fea Author: Alan Garny Date: Tue Aug 1 15:40:43 2017 -0300 Updated our downloads pages (#1385). commit 85224532d79ccd1df5e21e3448fd47a4da8679ab Author: Alan Garny Date: Tue Aug 1 15:18:34 2017 -0300 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file (#1385). commit 0c997886e42904bec9f34bbd339095eb2a99fe86 Author: Alan Garny Date: Tue Aug 1 10:36:27 2017 -0300 Some minor cleaning up [ci skip]. commit a0ffcf62892e042d6ca5da3936f1028cb60a7957 Merge: 08022e87e 422bbfc3b Author: Alan Garny Date: Tue Aug 1 10:34:54 2017 -0300 New snapshot. commit 5914af02e0c7537361e2a1ea0fbd9b7101a4a97d Author: David Brooks Date: Sun Jul 30 12:46:40 2017 +1200 Optimisation: add sensitivity analysis to the CVode solver. commit 84412bfc1a385304eaa994a688f5a45a48092c71 Author: David Brooks Date: Sun Jul 30 11:43:33 2017 +1200 Optimisation: track indices of constants having gradients calculated. commit d77bf442da75a10d3b1f7fd4d4199fe7a0020547 Author: David Brooks Date: Sun Jul 30 11:22:08 2017 +1200 Tidy code: use a better name for some `SimulationResults` methods. commit 561bf8175a433e5841dfdc429e5952500b312cdf Author: David Brooks Date: Thu Jul 27 15:26:37 2017 +1200 Python: rename `PythonQtSupport` plugin to `PythonSupport`. commit 80f693ac787e055317ac009ae46fb5485a7603a7 Author: David Brooks Date: Thu Jul 27 15:03:27 2017 +1200 Add missing `Simulation::fileName()`; fix name of include. commit 3ef2a37e005f64900e40aee5260cc20c08da73ff Merge: 08022e87e dc8272ed2 Author: David Brooks Date: Thu Jul 27 13:49:48 2017 +1200 Merge branch '\''pythonplugin'\'' into python-simlib commit 422bbfc3b4379b99bded2e669b4eea65b41ccd12 Author: Alan Garny Date: Sun Jul 23 17:52:23 2017 +0200 New snapshot. commit 08022e87ebcbc78b2a679d972248552d74eaf9ec Merge: 7df26a6ca cb9f992c5 Author: Alan Garny Date: Sat Jul 22 04:32:03 2017 +0200 Added a simulation support plugin (to separate out running of a simulation from its widget) (closes #1266). commit cb9f992c5c928cf1afcf0837e945e10c78435c54 Author: Alan Garny Date: Sat Jul 22 04:01:15 2017 +0200 Make sure that our Sample view plugin properly handles our new file handling interface (#1266). commit c30183ebebfc8a11d56aaab41776b2873ec4bb44 Author: Alan Garny Date: Sat Jul 22 03:49:18 2017 +0200 Slight update to our downloads page (#1266). commit bad3d87807c7c96290f0229d18f4fb3d8cd99bb1 Author: Alan Garny Date: Sat Jul 22 03:44:42 2017 +0200 Simulation support: can now safely save/save as, and reload a file (#1266). commit 4c057abc9c311af106386357660fefd8a4dbb727 Author: Alan Garny Date: Sat Jul 22 00:19:16 2017 +0200 Simulation Experiment view: take advantage of our new simulation manager (#1266). commit 2635429cc435075a823153df962fd43d0c1b2b5f Author: Alan Garny Date: Sat Jul 22 00:11:25 2017 +0200 Simulation support: added a simulation manager (#1266). commit ea7e41b04bf880abc97e0f7f5420c798f4475e36 Author: Alan Garny Date: Fri Jul 21 23:16:26 2017 +0200 Simulation support: we need our Simulation object to have its runtime defined before we can craete its data and results (#1266). commit 2e27c7db82e2bccb585133539b49a50b872b477a Author: Alan Garny Date: Fri Jul 21 22:12:24 2017 +0200 Make sure that we can build on Windows (#1266). commit c60c9dd05eef3881cc706df2eaba58bf33c8490b Author: Alan Garny Date: Fri Jul 21 21:46:40 2017 +0200 Simulation support: our Simulation class can now retrieve some information about its file (#1266). commit 76efb6f5539099f4dec81d4b70229f6d357d98cc Author: Alan Garny Date: Fri Jul 21 18:34:40 2017 +0200 Simulation support: getting ready to move more things into our Simulation class (#1266). commit 008084193db9f54e53779d8afb66821560a1c3f6 Author: Alan Garny Date: Fri Jul 21 18:08:52 2017 +0200 Some minor cleaning up. commit e6843651057b65ab2ff4443572aba3ddf33a8b4d Author: Alan Garny Date: Fri Jul 21 18:05:17 2017 +0200 Taking advantage of our SED-ML file and COMBINE archive classes now hosting their own issues (#1266). commit 02140d911335134bfbc0077b14e6d18def7e7cc2 Author: Alan Garny Date: Fri Jul 21 17:54:05 2017 +0200 Some minor cleaning up. commit e98ee20f6243b7badfd771cd651daa738b54b273 Author: Alan Garny Date: Fri Jul 21 17:26:08 2017 +0200 Simulation Experiment view: now make use of our (still basic) new Simulation support classes (#1266). commit 9495a63e1a2d9cdbc58c4a68dc2383c83f18aa89 Author: Alan Garny Date: Fri Jul 21 16:35:36 2017 +0200 Copied the contents of simulationexperimentviewsimulation.* and simulationexperimentviewsimulationworker.* to simulation.* and simulationworker.*, respectively (#1266). commit 313df42f616de60308039f944373eccc08840b87 Author: Alan Garny Date: Fri Jul 21 15:35:54 2017 +0200 Simulation plugin: created a shell plugin (#1266). commit 7df26a6ca60c83e1041f8a20e24fbb891d11dac6 Merge: af11be93f 566882e64 Author: Alan Garny Date: Fri Jul 21 14:33:05 2017 +0200 Travis CI: use ninja instead of make. commit 566882e64d0ae1b7ac25e14c24ec2682b6d70fb5 Author: Alan Garny Date: Fri Jul 21 14:04:37 2017 +0200 Travis CI: use ninja instead of make. commit caa9b93e0ff3d3b670f0e2857b34644f5d68e984 Author: Alan Garny Date: Fri Jul 21 13:35:10 2017 +0200 Travis CI: trying to build with ninja on macOS. commit af11be93f196bce1f6fa117da5b57b3564f10b7e Merge: 944d5130f 535e2d2ed Author: Alan Garny Date: Fri Jul 21 13:34:16 2017 +0200 SimulationExperiment view: prevented the renaming of a file from messing up a locked graph (closes #1365). commit 4878739bda5c9ce072b58ed3bf15aaf1f2cc2bb1 Author: Alan Garny Date: Fri Jul 21 13:24:59 2017 +0200 Travis CI: trying to build with ninja on Linux. commit 535e2d2eddf6a50f783196da1be661b3a1881b9d Author: Alan Garny Date: Fri Jul 21 13:02:27 2017 +0200 Slight update to our downloads page (#1365). commit de1409dc43b92a2074e17d51796b96d4fe31c910 Author: Alan Garny Date: Fri Jul 21 12:59:33 2017 +0200 SimulationExperiment view: prevent the renaming of a file from messing up a locked graph (#1365). commit 944d5130f51aaec30f8a4bfd52ec24e23bd688bb Merge: be4fa163d d40cf369d Author: Alan Garny Date: Thu Jul 20 19:44:45 2017 +0200 Text-based editors: the font size doesn'\''t get reset anymore when reloading a file (closes #1369). commit d40cf369d5c1aa5ce73c81590aa87c973d3a2e22 Author: Alan Garny Date: Thu Jul 20 18:54:11 2017 +0200 Slight update to our downloads page (#1369). commit dd46fb245204566200b092899310e1aee468e4c9 Author: Alan Garny Date: Thu Jul 20 18:52:10 2017 +0200 Text-based editors: the font size doesn'\''t get reset anymore when reloading a file (#1369). commit be4fa163dfc7132ec76970464eab459c54174f1c Author: Alan Garny Date: Thu Jul 20 17:48:37 2017 +0200 Some minor cleaning up. commit 62f19c2a03c4c23bdcf0e719b2994a878eedbace Merge: 17e7d4a95 2376e25a3 Author: Alan Garny Date: Thu Jul 20 17:18:20 2017 +0200 Mainly some refactoring and cleaning up. commit 2376e25a3d31b6915a39d9a9984001c80baf05f7 Author: Alan Garny Date: Thu Jul 20 16:37:24 2017 +0200 Simulation Experiment view: prevent a potential problem with filters when exporting a simulation to SED-ML or a COMBINE archive. commit d05af71bc969d80fd7ca6dbac28160252d080719 Author: Alan Garny Date: Thu Jul 20 16:24:18 2017 +0200 Some minor cleaning up. commit c39b0d5cb5de6663471b3ae9bc7307f1eb996e2a Author: Alan Garny Date: Thu Jul 20 16:17:16 2017 +0200 SED-ML support: now have methods to check that it is supported and to retrieve its corresponding CellML file. This has basically meant moving SimulationExperimentViewSimulationWidget::sedmlFileSupported() to SedmlFile::isSupported() and SimulationExperimentViewSimulationWidget::retrieveCellmlFile() to SedmlFile::cellmlFile(). commit f16d5ec7f6b75f5d96caeaf7a99e14bd004ca053 Author: Alan Garny Date: Thu Jul 20 14:53:52 2017 +0200 Moved SimulationExperimentViewSimulationWidget::sedmlAlgorithmSupported() to SedmlFile::algorithmSupported(). commit 60e208f71ef1ebeaa2ab538e3610b3fd814750e6 Author: Alan Garny Date: Thu Jul 20 14:40:02 2017 +0200 Some minor cleaning up. commit 27d911e2033a35d5edb5446b2daf9c430c24a003 Author: Alan Garny Date: Thu Jul 20 13:29:07 2017 +0200 SED-ML support: can now validate a SED-ML file directly. This is in contrast with before where we could only validate some file contents. commit 57721e2d565f3f8ff242851667bd35b44c2edf9e Author: Alan Garny Date: Thu Jul 20 12:51:27 2017 +0200 SED-ML support: allow the creation of a SED-ML with the file name of its owner. This will come handy later on when we can retrieve the corresponding CellML file of a SED-ML file. commit ce0df3fcfe3385b73a90832acb7f92a25b9c67a1 Author: Alan Garny Date: Thu Jul 20 11:23:18 2017 +0200 COMBINE support: now have methods to check that it is supported and to retrieve its corresponding SED-ML file. commit e78cc96a1b04a05d8ce0f0a615901787cdd5a20f Author: Alan Garny Date: Thu Jul 20 10:34:47 2017 +0200 Some minor cleaning up. commit 15e80aee8631b0db8b71110b54e5cf8ee89345d0 Author: Alan Garny Date: Wed Jul 19 19:14:40 2017 +0200 CellML support: added a method to directly check for a CellML file'\''s validity. commit f5c441e79258ad193fe0b8f931276b3a88df131b Author: Alan Garny Date: Wed Jul 19 19:12:56 2017 +0200 Some minor cleaning up. commit 85f218d88126e28da1059e577a540221b15da4b6 Author: Alan Garny Date: Wed Jul 19 18:48:56 2017 +0200 Some minor cleaning up. commit c0aa60c4cb7f6a7c7dda4dfddcf21476283f47be Author: Alan Garny Date: Wed Jul 19 18:38:50 2017 +0200 Moved SimulationExperimentViewSimulationWidget::FileType to SimulationExperimentViewSimulation::FileType. commit f8445384baed1638e807af097efe84518eabd2dd Author: Alan Garny Date: Wed Jul 19 18:15:05 2017 +0200 Some minor cleaning up. commit f68b4e7c13b055ed3389245f81692253f5b82654 Author: Alan Garny Date: Wed Jul 19 17:15:15 2017 +0200 CellML Annotation view: fixed a class member access problem. Indeed, we were trying to call CellmlAnnotationViewCellmlElementItem::type() on our model’s invisible root item, which obviously cannot work, even though it used to be ‘fine’ until now…?! commit 17e7d4a9538190384843a4cdd01d7bc8a70c50c9 Author: Alan Garny Date: Tue Jul 18 19:46:22 2017 +0200 Slight update to our downloads pages. commit dc8272ed20389c8a51ac5e15df3088b6ef614c82 Merge: 12f9a33d9 9b6009fc1 Author: David Brooks Date: Tue Jul 18 22:42:40 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 12f9a33d96acd0185ba29888161ba679e732d61d Author: David Brooks Date: Tue Jul 18 21:53:59 2017 +1200 Resolve build issues with Python headers (#1376). commit f5a0490d98300233576fe00a7c9ae5fa02c31c3f Author: David Brooks Date: Tue Jul 18 21:53:28 2017 +1200 Export `${PROJECT_NAME}_EXTERNAL_SOURCES` so other plugins can use depend on this target (#1376). commit 9b6009fc1f032dff8ea595a80e9c11306f4fa2a0 Merge: fb7a50355 48f3ca545 Author: Alan Garny Date: Sat Jul 15 23:55:07 2017 +0200 Some minor refactoring and some cleaning ups. commit 48f3ca5450faeedb211c7e3feb7c50536f708ca9 Author: Alan Garny Date: Sat Jul 15 23:24:40 2017 +0200 SimulationExperiment view: replaced a couple of QObject::tr() calls with tr(). commit fde5fc75f2145e1ff20ed6e45dd8f055127d1380 Author: Alan Garny Date: Sat Jul 15 23:18:34 2017 +0200 SimulationExperiment view: make sure that our SED-ML related messages are properly formatted. commit b507008af603a3e9cbb0722db100439bcf4ea566 Author: Alan Garny Date: Sat Jul 15 23:17:10 2017 +0200 Some minor cleaning up. commit 627b8436b2c65d3625aba5fc1c68a9fb691dbee4 Author: Alan Garny Date: Sat Jul 15 22:50:39 2017 +0200 Some minor cleaning up. commit 9c7ec87a79cd4a67d395914f282b87616338dee3 Author: Alan Garny Date: Sat Jul 15 21:29:16 2017 +0200 Moved SimulationExperimentViewSimulationWidget::parameterIcon() to CellmlFileRuntimeParameter::icon(). commit fb7a50355354d2057eb47644e1422a2f770b9096 Merge: c2928f276 f3870d7f8 Author: Alan Garny Date: Sat Jul 15 20:02:18 2017 +0200 Make certain interfaces available to other plugins (closes #1371). commit f3870d7f8f85657212929ef56bcf709ac9516cfb Author: Alan Garny Date: Sat Jul 15 19:05:22 2017 +0200 Take advantage of our new '\''global'\'' solver and data store interfaces (#1371). commit 3b062751244dbb5f864bfc466fa474509f46602e Author: Alan Garny Date: Sat Jul 15 17:02:42 2017 +0200 Take advantage of our new '\''global'\'' SED-ML and COMBINE file type instances (#1371). commit 21006a3f994dd4fb1bb99c2513c673842dd26c99 Author: Alan Garny Date: Sat Jul 15 16:56:55 2017 +0200 Take advantage of our new '\''global'\'' CellML file type instance (#1371). commit 3786cbd97438cf164d336fcdbc6402d5fb5b56ed Author: Alan Garny Date: Sat Jul 15 16:43:23 2017 +0200 Added a CellML, SED-ML and COMBINE file type interface (#1371). commit 222d9895a777a63e3d8d150598c50b481aa9894d Author: Alan Garny Date: Sat Jul 15 16:14:57 2017 +0200 Slight update to our downloads page (#1371). commit c2928f276eb5bd463d0218965eab64a1c7cf910a Merge: 876827ef7 8755623fb Author: Alan Garny Date: Sat Jul 15 13:11:57 2017 +0200 Core plugin: make certain interfaces available to other plugins (closes #1371). commit 8755623fb20c7eaca6e5380fd5d6ad424f1a35af Author: Alan Garny Date: Sat Jul 15 11:45:57 2017 +0200 Slight update to our downloads page (#1371). commit a3aa3899b26b5a6de930b6c7f98e716c93001a95 Author: Alan Garny Date: Sat Jul 15 11:41:52 2017 +0200 Core plugin: make certain interfaces available to other plugins (#1371). commit 8f38fc8fa39edada9ec3d843a2175bb47188d6b1 Merge: f5c42438a 876827ef7 Author: David Brooks Date: Fri Jul 14 10:34:12 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 876827ef7d75494763f8b05a988bfd8152b1b5c5 Merge: 2ad47f083 bbc4c23a8 Author: Alan Garny Date: Thu Jul 13 20:50:14 2017 +0200 Various cleaning ups. commit bbc4c23a8f8a7dad7b88923d710dcf4f3f1042c4 Author: Alan Garny Date: Thu Jul 13 19:01:57 2017 +0200 Added a missing header file. commit a7ad72acdb7450d4ce9e3d20c2a42be80149b426 Author: Alan Garny Date: Thu Jul 13 18:40:20 2017 +0200 Standard support: renamed a few methods for our StandardFileManager class. commit 4ea95502d0ad37184bdb187f86174a09e889c765 Author: Alan Garny Date: Thu Jul 13 18:34:58 2017 +0200 SimulationExperimentView plugin: only ask our view widget to reload itself if really necessary. commit 46e5b0fa2e31913f1dd5ee070135aaf6a8a6b66a Author: Alan Garny Date: Thu Jul 13 18:34:08 2017 +0200 '\''Properly'\'' initialise some classes. Indeed, we forgot to do it after commit 6642776. commit 87d7fac6178016863dbbb0c6897877adba6dae9b Author: Alan Garny Date: Thu Jul 13 18:33:27 2017 +0200 Some minor cleaning up. commit ec05793d949c20009f39f48a082e8a4991e08013 Author: Alan Garny Date: Thu Jul 13 18:32:16 2017 +0200 Replaced QObject::tr() with tr() wherever possible. commit 32be527f5c8ec4df6999a2eed852f17dbbb9492b Author: Alan Garny Date: Thu Jul 13 18:27:23 2017 +0200 '\''Properly'\'' initialise some classes. Indeed, we forgot to do it after commit 6642776. commit fae3147840f44f0f3d67caf4a60f133366dc3b9a Author: Alan Garny Date: Thu Jul 13 18:23:04 2017 +0200 Removed unnecessary include files. commit 2ad47f08341a1324dca918eb3c4d59914c5e679f Merge: 221712515 581ca062c Author: Alan Garny Date: Thu Jul 13 11:40:30 2017 +0200 SUNDIALS package: don'\''t package CVODE and IDA anymore (to avoid conflicts with CVODES and IDAS) (closes #1367). commit 581ca062c33850ac836a4f765687c15083503d47 Author: Alan Garny Date: Thu Jul 13 11:11:03 2017 +0200 SUNDIALS package: generated our new binaries (#1367). commit 19446070f3de3ed3508b7840a453f011ae2e0301 Author: Alan Garny Date: Thu Jul 13 10:37:05 2017 +0200 SUNDIALS package: don'\''t package CVODE and IDA (#1367). commit d2eb6916532a9c07c385e25a3dae3d077e747acb Author: Alan Garny Date: Thu Jul 13 10:35:50 2017 +0200 Slight update to our downloads page (#1367). commit 22171251584394f539e8c5a91167c4372368128a Author: Alan Garny Date: Wed Jul 12 16:51:47 2017 +0200 Slight update to our COR page [ci skip]. commit f5c42438acec2e92e0a33eb5201063fd9bfae94c Author: David Brooks Date: Wed Jul 12 11:09:03 2017 +1200 Tidying up. commit 97383a89a58ea01f1a6c6f8b6c6db799996ff5b9 Author: Alan Garny Date: Mon Jul 10 11:27:10 2017 +0200 Slight update to our third-party libraries page. I had forgotten to update the version of QScintilla that we are now using. commit 38113aa82e6e77b866745334b5254aa9c94c320a Merge: 9a664e8be e807852b1 Author: Alan Garny Date: Sat Jul 8 01:15:53 2017 +0200 Some minor cleaning up and refactoring. commit e807852b1d5402d5527d118272b97aaefc952308 Author: Alan Garny Date: Sat Jul 8 00:41:50 2017 +0200 Some minor cleaning up. commit 78490f4c342799f2bce80fac7f6141f30f45876f Author: Alan Garny Date: Sat Jul 8 00:38:21 2017 +0200 QScintilla support: some minor cleaning up. commit 1ab9accda2c881464871588c520eccf81621f363 Author: Alan Garny Date: Sat Jul 8 00:29:59 2017 +0200 PMR support: refactoring of some static methods. commit da78f501a6cae88c52f72a3592d2028e35d867b6 Author: Alan Garny Date: Fri Jul 7 23:44:19 2017 +0200 CellML support: some minor cleaning up. commit e989a9c01b607062144f3e589487b29649e03ce5 Author: Alan Garny Date: Fri Jul 7 23:35:30 2017 +0200 CellML support: some minor cleaning up. commit 82ed497edaf177c312cf0848b1daddf85d76c1de Author: Alan Garny Date: Fri Jul 7 22:56:35 2017 +0200 CellMLAnnotation view: refactoring of some static methods. commit 9a664e8be4452f7d5287e002dd5cc847e7f2c2a5 Author: Alan Garny Date: Fri Jul 7 15:26:05 2017 +0200 Some minor cleaning up. commit dd2e6875ff09598e4e3b02a46979b8d586e57cb1 Author: Alan Garny Date: Fri Jul 7 15:19:16 2017 +0200 Some minor cleaning up. commit 9534d382e45e1b9f96c095c65e4ff30548628e9a Author: Alan Garny Date: Fri Jul 7 15:16:02 2017 +0200 Some minor cleaning up. commit 07b50d200a627a64315f5a848bc732b8ebd3b10a Merge: a40c2c55f 931bbaa6e Author: David Brooks Date: Fri Jul 7 21:26:39 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 931bbaa6e64ab8ef37aa94545c474e631696bd61 Merge: 4210736c1 37c1770a6 Author: Alan Garny Date: Fri Jul 7 11:12:06 2017 +0200 SimulationExperiment view: ensured that the plugin is '\''clean'\''. commit 37c1770a66e78b2065193ac705a48d9a3ac115a8 Author: Alan Garny Date: Fri Jul 7 10:37:46 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit a40c2c55f212e2c5e5131a476df14b9719ee0e89 Merge: 7eee832c1 4210736c1 Author: David Brooks Date: Fri Jul 7 11:29:52 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 7eee832c1e1c88ac116f086048c9eb54b5679f91 Merge: 7bc6f63c9 da782ace4 Author: David Brooks Date: Fri Jul 7 10:38:54 2017 +1200 Merge branch '\''pythonwrapper'\'' into pythonplugin commit da782ace4d0a5e8c44a8cae70ca8add62486bdc9 Author: David Brooks Date: Fri Jul 7 10:37:44 2017 +1200 Minor tidy-up to comment. commit a91fdd6a1415a9ceb70bab76885e7259c6b665d2 Author: David Brooks Date: Fri Jul 7 10:37:17 2017 +1200 `INCLUDE_DIRS` parameter to `ADD_PLUGIN` is not needed if Python headers are copied to a well-known location (#1275). commit ecd412a4687d15f833d85dc655377ab368e60de6 Author: David Brooks Date: Fri Jul 7 10:20:05 2017 +1200 Tidy up code for calling a Python script (#1275). commit 2fab343f1e939919812bf60fbadc9b334d567c32 Author: David Brooks Date: Fri Jul 7 10:15:51 2017 +1200 Use an plugin interface for Python class wrapping (#1275). commit 4210736c1a556b5e9324d9250a7e360cfe189233 Merge: e50e09281 b0fc9fc09 Author: Alan Garny Date: Thu Jul 6 18:33:06 2017 +0200 SimulationExperiment view: ensured that the plugin is '\''clean'\''. commit b0fc9fc090f09138059a30a34bb1a3acdcd07eef Author: Alan Garny Date: Thu Jul 6 17:38:45 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit e07776f8679067ae88ab8c47efab07f602887817 Author: Alan Garny Date: Thu Jul 6 17:22:56 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 8acd5af3bb99dba33dfda62ba825c90c43c401ea Author: Alan Garny Date: Thu Jul 6 17:18:09 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 41197745092ce7fffbc72c90636dc1715ca10787 Author: Alan Garny Date: Thu Jul 6 17:10:50 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 6bfc29b524db6d38495e4ea8aa4c8e43f3b09444 Author: Alan Garny Date: Thu Jul 6 12:24:11 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is '\''clean'\''. Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit e50e092817e3d7b636f37d95fc4092ef1b02d095 Merge: fcc10c86c 2e98e236a Author: Alan Garny Date: Wed Jul 5 17:24:59 2017 +0200 Some minor cleaning up. commit 2e98e236ad543cb86e8c8ca4554337b0d8362fe7 Author: Alan Garny Date: Wed Jul 5 17:18:21 2017 +0200 Some minor cleaning up. commit fcc10c86c6a48fb8622597fd5edc23183537d3ca Author: Alan Garny Date: Wed Jul 5 13:38:18 2017 +0200 Slight update to our downloads page [ci skip]. commit 70d3721eb8890f902404ca2fd5b6bbc4b4bd3197 Merge: ec74122cb 4e0177dae Author: Alan Garny Date: Wed Jul 5 13:33:44 2017 +0200 QScintilla: upgraded to version 2.10.1 (closes #1358). commit 4e0177dae2d6b22c39db827ea24dc65484bb93bf Author: Alan Garny Date: Wed Jul 5 11:47:19 2017 +0200 QScintilla: generated the 2.10.1 binaries (#1358). commit ec74122cbf24a19435bb836f4cfa5c22910aa0ed Merge: 07c36067d 92a45924f Author: Alan Garny Date: Wed Jul 5 11:37:59 2017 +0200 Added a warning about our change of license. commit f7787f08f2828e1454aaf05b6d128e1a742b70f8 Author: Alan Garny Date: Wed Jul 5 11:36:38 2017 +0200 QScintilla: some work on upgrading to version 2.10.1 (#1358). QScintilla now distinguishes between release and debug versions (on Windows at least). commit 92a45924ff580732d096ef5c7d37a7b441504726 Author: Alan Garny Date: Wed Jul 5 11:07:16 2017 +0200 Added a warning about our change of license. commit 2852e4a00cb1ce8fb3020bd38132af5aeceb4c77 Author: Alan Garny Date: Wed Jul 5 11:06:53 2017 +0200 Some minor cleaning up. commit 8daa85df2386b3f3d58519a29f6d2211ca2311ef Merge: 1e180274b 07c36067d Author: David Brooks Date: Wed Jul 5 10:58:07 2017 +1200 Merge branch '\''master'\'' into pythonwrapper commit 7bc6f63c96fa62aac7030ae200a32e74bc07fabd Merge: 40a93ff37 07c36067d Author: David Brooks Date: Wed Jul 5 10:57:38 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit ba9bb7ab54f2d83b842367375b6ce14c53be5cbc Author: Alan Garny Date: Tue Jul 4 18:50:27 2017 +0200 QScintilla: some work on upgrading to version 2.10.1 (#1358). commit 97b09e9edca55a5b93b38fdd2fd325d707d7c55e Author: Alan Garny Date: Tue Jul 4 18:18:16 2017 +0200 Getting ready to build the QScintilla package (#1358). commit 07c36067da4643213edc79905e3d572e76be7d5f Merge: 239f091b4 e5f4dfa3a Author: Alan Garny Date: Tue Jul 4 11:37:11 2017 +0200 Removed our dependency on Qt Charts. commit e5f4dfa3a0da8c20bdaa2e39e131cb27bca8a1b6 Author: Alan Garny Date: Tue Jul 4 11:06:36 2017 +0200 Removed all references to Qt Charts (see issue #1300). commit 6b28c6685f90051f7a028b1536aedd834053d65b Author: Alan Garny Date: Tue Jul 4 10:35:43 2017 +0200 Qt Charts and QtWebKit packages: removed their cmake/patch.c file, which is not needed anymore. commit 1e180274bfbd80acb0c0a6e2a3313225ebaa2943 Merge: 25cebba63 40a93ff37 Author: David Brooks Date: Tue Jul 4 17:43:55 2017 +1200 Merge branch '\''pythonplugin'\'' into pythonwrapper commit 40a93ff3733ec754bed726c22577353c688d7471 Merge: 5b5b58a6e 239f091b4 Author: David Brooks Date: Tue Jul 4 17:43:21 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 239f091b4ac728ab852ea69d150c2dc6f3c0c746 Merge: 939c47efd bf6e9aba0 Author: Alan Garny Date: Mon Jul 3 19:16:34 2017 +0200 Documentation: reference to COR and a link to download it. commit bf6e9aba006d994d591a8d1609672a4cc67f5808 Author: Alan Garny Date: Mon Jul 3 18:21:19 2017 +0200 Documentation: reference to COR and a link to download it. commit 939c47efdb6b0c3b219ecfa2997afbc8079245b6 Author: Alan Garny Date: Mon Jul 3 11:39:04 2017 +0200 Some minor cleaning up [ci skip]. commit 49f14320c2e484e5a2869f314ef06c491a8c471c Author: Alan Garny Date: Mon Jul 3 11:38:59 2017 +0200 Some minor cleaning up [ci skip]. commit dbfa3733b40ef0bc26168e2f1ecef5aa765800c6 Author: Alan Garny Date: Mon Jul 3 11:32:41 2017 +0200 Some minor cleaning up [ci skip]. commit c7f938c14744734ae91e8650918c6e9ba6925183 Author: Alan Garny Date: Mon Jul 3 11:32:18 2017 +0200 Some minor cleaning up [ci skip]. commit af20ed03a747f9ab66a05e05e660e03cab2611b6 Merge: 878068a75 79ac18ff2 Author: Alan Garny Date: Sun Jul 2 13:34:08 2017 +0200 Property Editor widget: disallowed navigation using the (Shift+)Tab key(s) (closes #1354). commit 79ac18ff263f41b3c5733645a1ced52bfdfbb232 Author: Alan Garny Date: Sun Jul 2 13:02:00 2017 +0200 Slight update to our downloads page (#1354). commit c872649f25282b608d0298a9824e1b920588a9a6 Author: Alan Garny Date: Sun Jul 2 12:59:38 2017 +0200 Property Editor widget: disallowing navigation using the (Shift+)Tab key(s) (#1354). commit f46bb20b641475baec2ab8370dba055b459fa74e Author: Alan Garny Date: Sun Jul 2 12:52:18 2017 +0200 Property Editor widget: disallowing navigation using the (Shift+)Tab key(s) (#1354). commit b9f9ae1bf1739519fb7ebbd2551ef906cebd0ac6 Author: Alan Garny Date: Sun Jul 2 12:43:33 2017 +0200 Some minor cleaning up. commit 878068a75d322d065af14bd2392d588641e0d4ab Merge: ac09e4b3d fe99ad916 Author: Alan Garny Date: Sat Jul 1 14:23:30 2017 +0200 LLVM: upgraded to version 4.0.1 (closes #1352). commit fe99ad916ec5fafca2a4edc68a425ba0ab206cfa Author: Alan Garny Date: Sat Jul 1 13:56:12 2017 +0200 LLVM+Clang package: new Windows binaries (#1352). commit f74515eb18bd1971f251af8a08874bc122ecec20 Author: Alan Garny Date: Sat Jul 1 10:23:10 2017 +0200 LLVM+Clang package: new Windows binaries (#1352). commit 39115ec022976770f0780f450f9097cc70888413 Author: Alan Garny Date: Sat Jul 1 02:36:12 2017 +0200 LLVM+Clang package: generated binaries for version 4.0.1 (#1352). commit a5c0bf5c522c918d1089c738fc4431a61dc262ef Author: Alan Garny Date: Fri Jun 30 17:01:24 2017 +0200 We actually want to build our other plugins to make sure that LLVM+Clang works fine (#1352). commit 22fad0b6ec6bad053872b8497d46729dc79e74ed Author: Alan Garny Date: Fri Jun 30 16:56:52 2017 +0200 Now build version 4.0.1 of LLVM+Clang (#1352). commit 11ad2f037825a135e8037d89c9683834be3ab764 Author: Alan Garny Date: Fri Jun 30 14:31:28 2017 +0200 Get ready to build LLVM+Clang (#1352). commit b78a9d86a9f8ac21f1e0f7d03ac3e13081f64f35 Author: Alan Garny Date: Fri Jun 30 14:24:30 2017 +0200 Slight updates to our third-party libraries and downloads pages (#1352). commit ac09e4b3d0ffc150b03571207e27e771396d7e0e Merge: dfba75aa2 7e5f52adc Author: Alan Garny Date: Fri Jun 30 14:03:13 2017 +0200 Some minor cleaning up regarding the BioSignalML API package. commit 7e5f52adc06d6b0bda7ca11a16824c7b11b5b1b9 Merge: a7b36d954 aa01cdaf5 Author: Alan Garny Date: Fri Jun 30 13:25:02 2017 +0200 Updated BioSignalML binaries for Linux (#1313). commit a7b36d954287c9194e984c4f72bddffc258c5632 Merge: 9fee26d57 dfba75aa2 Author: Alan Garny Date: Fri Jun 30 11:43:11 2017 +0200 Merge branch '\''master'\'' into cleaning-up. commit dfba75aa2b22ccb01f3abc2a21e8e09a31936bd0 Author: Alan Garny Date: Fri Jun 30 11:42:00 2017 +0200 Slight update to our prerequisites page (closes #1350) [ci skip]. commit aa01cdaf533fa43024d75faf28ca7d4dbace8489 Author: David Brooks Date: Thu Jun 29 21:19:25 2017 +1200 Update BioSignalML binaries for Linux (#1313). commit 5b5b58a6ea57e38be39ecb53b8802693ca4837be Merge: 3abe056d5 0452d77b4 Author: David Brooks Date: Thu Jun 29 21:20:26 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 0452d77b49ef835188168ade0f49682bb42c0c92 Merge: 114585383 892dea0f2 Author: Alan Garny Date: Wed Jun 28 15:38:23 2017 +0200 Plugins: now provide message when a plugin is considered to be invalid (closes #1347). commit 1145853832643534b36d8277d78f7e60ef0c1622 Author: Alan Garny Date: Wed Jun 28 15:02:49 2017 +0200 Travis CI: we don'\''t need to specify the edge group anymore. Indeed, Travis CI have now officially upgraded their system, so we are fine (see https://blog.travis-ci.com/2017-06-21-trusty-updates-2017-Q2-launch). commit 892dea0f22afb5ee127725ed3d2720e1a0fd06c4 Author: Alan Garny Date: Wed Jun 28 14:55:57 2017 +0200 Slight updates to our what is new and downloads pages (#1347). commit ff112045941934893c1fda6c5a10f4b7b007fc2a Author: Alan Garny Date: Wed Jun 28 14:51:25 2017 +0200 Plugins: provide an error message when a plugin is considered to be invalid (#1347). commit 3abe056d5a87dfd21acd60df4b560dd53a4638af Author: David Brooks Date: Wed Jun 28 21:45:27 2017 +1200 PythonQt needs QtQuickWidgets library (#1086). commit 8fd0b9920971a5ced024a966d340e531c1531970 Author: Alan Garny Date: Tue Jun 27 20:04:20 2017 +0200 Some minor cleaning up. commit 1b449f1a1da85f197117ec24ab6fb0c138a4dfef Author: Alan Garny Date: Mon Jun 26 16:19:24 2017 +0200 Some minor cleaning up [ci skip]. commit 558c21cd58c0af4794e3c6896b614c66da38585b Author: Alan Garny Date: Mon Jun 26 15:37:42 2017 +0200 Some minor cleaning up [ci skip]. commit 9fee26d57946b3ba6b56d11998816229dd11d088 Author: Alan Garny Date: Mon Jun 26 10:46:31 2017 +0200 BioSignalML API package: added a very simple test to make sure that we have access to BioSignalML. commit a6f2bb0ea0d48f5294a200e2e3203dfe4637af5e Author: Alan Garny Date: Mon Jun 26 10:02:59 2017 +0200 BioSignalML API package: removed the `include` folder. We now have it in the `ext` folder, not to mention that this one was slightly off when it comes to the version of the libraries. commit 6da3a8a4091415e8fc3e527c4073ca886386e67c Merge: 18a6f753c 0b72078dc Author: David Brooks Date: Mon Jun 26 19:56:41 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 0b72078dc367ddc29bd9338b5ef2b4a4b360545a Merge: d3c1c3d8c 7713a0844 Author: Alan Garny Date: Mon Jun 26 01:03:08 2017 +0200 Some minor CMake-related refactoring following our work on issue #1342. commit d3c1c3d8cc3a5afd3129c3760e49336f48c8e2b5 Merge: 03686748f d14a3ad78 Author: Alan Garny Date: Sun Jun 25 23:46:13 2017 +0200 Use new packaging system for BioSignalML API plugin (closes #1313). commit 7713a084418a31aaa122d7686efb8983955d62f1 Author: Alan Garny Date: Sun Jun 25 23:40:55 2017 +0200 Reuse our C file for patching Qt CMake files (useful for both our QtCharts and QtWebKit packages). commit d14a3ad7817d45a10d20029b5e4488ebe2f2923f Author: David Brooks Date: Mon Jun 26 08:34:28 2017 +1200 Tidy up CMake script; specify correct package release tag (#1313). commit 6aeeb785e612203ef13bfa8e7b31be6b89207ba6 Author: Alan Garny Date: Sun Jun 25 22:30:38 2017 +0200 Some minor cleaning up. This was (rightly) confusing Ninja who thought that there were two sets of rules for both our release and debug versions of Qt Charts. commit 9a485bda413bdc2f3c13b0b8b5286dc9d4530245 Author: Alan Garny Date: Sun Jun 25 21:31:11 2017 +0200 Reuse our CMake file for patching Qt header files (useful for both our QtCharts and QtWebKit packages). commit 265ecae49f6bb5accc78049fbaef7f1c23334f8c Author: David Brooks Date: Sun Jun 25 21:11:39 2017 +1200 Upgrade to libbiosignalml v0.8.4 and typedobject v1.1.2; build binaries for all platforms (#1313). commit 79b3ce8b08e8724f27f786dd01df4331d9e048bd Author: Alan Garny Date: Sun Jun 25 00:45:11 2017 +0200 libSBML package: only retrieve the libSBML dependencies if we don'\''t have them and if we want to build libSBML. commit 03686748f513d3ef6c575ef4e28d1e9fb9327fee Merge: e4625a8dc 6d807d28e Author: Alan Garny Date: Sat Jun 24 21:23:05 2017 +0200 Added Qt Charts as a package (closes #1342). commit 6d807d28e83ed80c6a499c9583bea34c69d7cf24 Author: Alan Garny Date: Sat Jun 24 20:54:42 2017 +0200 Slight update to our downloads page (#1342). commit 9aa6502092645b24504c7693285104b4502873c7 Author: Alan Garny Date: Sat Jun 24 20:45:41 2017 +0200 Some minor cleaning up (#1342). commit 99f2a51905a857ff8977c55ecc42c3dace4338ae Author: Alan Garny Date: Sat Jun 24 20:32:52 2017 +0200 QtCharts package: done building Qt Charts (#1342). commit 6e7ec643dc8a39ed1f0268f9b33d8b569304f28f Author: Alan Garny Date: Sat Jun 24 20:30:24 2017 +0200 QtCharts package: built it on Windows and Linux (#1342). commit dca1a39eddbabe8009509f261b9f7672db4a27a7 Author: Alan Garny Date: Sat Jun 24 20:07:39 2017 +0200 QtCharts package: make sure that we can configure things on Linux (#1342). commit 2e99dcc41b1df7c92ae6c57b5227351c28f97634 Author: Alan Garny Date: Sat Jun 24 19:57:49 2017 +0200 QtCharts package: built it on macOS (#1342). commit e4625a8dca22569bd0632d78c698b85f3b00a990 Author: Alan Garny Date: Sat Jun 24 18:05:16 2017 +0200 Some minor cleaning up. commit 65b50852f29c1ce4a4e98c1a77ea3adbec587bd5 Author: Alan Garny Date: Fri Jun 23 19:25:18 2017 +0200 libgit2 package: updated our Windows binaries. commit 0052cda4fd9903326bc1cc4b8aa37aae1364be75 Author: Alan Garny Date: Fri Jun 23 19:04:21 2017 +0200 Some minor cleaning up [ci skip]. commit b80092d5210994c0e7a3f596ab66307a11f2c506 Author: Alan Garny Date: Fri Jun 23 19:04:05 2017 +0200 Some minor cleaning up [ci skip]. commit 6eedb14c11d16d936c077aebcef79a749dcee00d Author: Alan Garny Date: Fri Jun 23 18:41:52 2017 +0200 Some minor cleaning up [ci skip]. commit 3215407e5a355542f687994ff3e898a3670dbb69 Author: Alan Garny Date: Thu Jun 22 16:21:03 2017 +0200 Some minor cleaning up [ci skip]. commit 53c495cb141a306a5619514bc4d327e595cc98a9 Author: Alan Garny Date: Thu Jun 22 16:18:24 2017 +0200 Some minor cleaning up [ci skip]. commit 8837b79d64e69e6692f53a195173d6dc81587a06 Merge: 1ab7ebeac 9de8bbc87 Author: Alan Garny Date: Thu Jun 22 16:12:08 2017 +0200 libgit2: upgraded to version 0.26 (closes #1340). commit 9de8bbc8722abb20a8f20895ae921218a6333130 Author: Alan Garny Date: Thu Jun 22 15:38:33 2017 +0200 libgit2 package: new binaries (#1340). commit bdccbedf788993702c95f74724ba652173545778 Author: Alan Garny Date: Thu Jun 22 14:58:47 2017 +0200 libgit2 package: updated the version we are now using (#1340). commit 9fe1874af24f2b71137b79d31754c7f300b643bb Author: Alan Garny Date: Thu Jun 22 14:12:51 2017 +0200 libgit2 package: getting ready to update our binaries (#1340). commit cfd3d23899a8312253fb5d1a3acf8fe136996dd6 Author: Alan Garny Date: Thu Jun 22 14:12:23 2017 +0200 libgit2 package: now build against maint/v0.26 (#1340). commit a8cef53f45b2c2523694c4f84dd92c209ed5e629 Author: Alan Garny Date: Thu Jun 22 11:53:38 2017 +0200 Updated our downloads pages (#1340). commit 0e7b3b08741c5ea3419ea6e803aaabda2ab2bfe4 Author: Alan Garny Date: Thu Jun 22 11:52:00 2017 +0200 Slight update to our third-party libraries page (#1340). commit 1ab7ebeac417c00d322ec5d3ae520fb1e8f4d180 Author: Alan Garny Date: Thu Jun 22 10:20:52 2017 +0200 Slight update to our third-party libraries page [ci skip]. commit 25c854dcc25e9c3ec3910fa9fb22ec1b31003ac7 Author: David Brooks Date: Thu Jun 22 16:22:13 2017 +1200 Use new packaging system for BioSignalML API libraries (#1313). commit 18a6f753c5a4e6f8892c1239286ad965bca004de Author: David Brooks Date: Thu Jun 22 11:34:15 2017 +1200 CMake: as a safeguard, make sure that empty variables are defined. commit 21dd6e88aba74bb1cd1f2f8d6a4a268a28895d7b Merge: 5b6c7648f d28eaec40 Author: David Brooks Date: Thu Jun 22 11:29:00 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 5b6c7648f6dee6abefb918ca25d4d2242bbc7d02 Author: David Brooks Date: Thu Jun 22 11:25:21 2017 +1200 Python plugins need to be declared *after* other third-party plugins (#1306). commit d28eaec40bfb2b20a18a75704a82d15ad760c73c Merge: 01d927b98 f66a317eb Author: Alan Garny Date: Wed Jun 21 23:47:49 2017 +0200 New snapshot. commit f66a317ebc3ff4f5e35ad53fff9021de00a918b4 Author: Alan Garny Date: Wed Jun 21 19:43:17 2017 +0200 Downloads page: fixed a small problem with the size of a snapshot being undefined. commit 10522503cc4a0d83c68f96bc82bb2a02514c5606 Author: Alan Garny Date: Wed Jun 21 18:41:22 2017 +0200 New snapshot. commit 01d927b98d6188c5b97d34f449dbd99487c98663 Merge: b03adb43c 5fa672c8e Author: Alan Garny Date: Wed Jun 21 18:37:57 2017 +0200 Some minor cleaning up, as well as fixed a small mistake in commit f1e6066. commit 5fa672c8eb29486ecd7d0aeee57193bd169b335a Author: Alan Garny Date: Wed Jun 21 17:27:15 2017 +0200 Oops, made a mistake in commit f1e6066. commit db0abdbabb6021bed1dafc4b64084927e1c14515 Author: Alan Garny Date: Wed Jun 21 16:21:30 2017 +0200 Some minor cleaning up. commit f350f0a8869e9feca795c57d0057fc38bb6dda76 Author: Alan Garny Date: Wed Jun 21 15:59:04 2017 +0200 Some minor cleaning up. commit b03adb43c72121f8551e8f37c94e323ec17e780a Merge: 32acc62fa 0b31c4c86 Author: Alan Garny Date: Wed Jun 21 15:38:10 2017 +0200 Graph Panel widget: improved the plotting of small values (closes #1322). commit 0b31c4c86b8168d638f9aa945f556ebf8418c26b Author: Alan Garny Date: Wed Jun 21 15:03:37 2017 +0200 Graph Panel widget: improved the plotting of small values (#1322). commit 9a24b97ee51f8260fe7b39ceace74ce545d1229e Author: Alan Garny Date: Wed Jun 21 13:25:24 2017 +0200 Slight update to our downloads page (#1322). commit 32acc62fab92235c7e95b019e37184f1cbd7d554 Merge: 978bb9bf1 c72b07962 Author: Alan Garny Date: Wed Jun 21 12:44:26 2017 +0200 Some minor CMake-related cleaning ups. Also reintroduced the INCLUDE_DIRS option in our ADD_PLUGIN() macro. commit c72b07962ce3a240231c62e4ac8ed996cd7b5490 Author: Alan Garny Date: Wed Jun 21 11:55:38 2017 +0200 Some minor cleaning up. commit c61d2eff79fb952eca9464a29abea36f5ff0b729 Author: Alan Garny Date: Wed Jun 21 11:33:38 2017 +0200 Getting ready to build libgit2. commit 5c03aa00a2a8978583a9ff538fa85e34a2e621a7 Author: Alan Garny Date: Wed Jun 21 11:14:20 2017 +0200 CMake: readding INCLUDE_DIRS for our ADD_PLUGIN() macro. It is needed for some Python-related plugins. commit f1e606638144973ae175d16880070d7bcfaaf9b3 Author: Alan Garny Date: Wed Jun 21 11:10:58 2017 +0200 CMake: as a safeguard, make sure that empty variables are defined. commit 7c7bfa4bd4ee598b52d3d84727e3fa7a33f3192c Author: David Brooks Date: Wed Jun 21 16:36:28 2017 +1200 Update binaries for Python packages and PythonQt (#1324). commit df4fd77fe718a0468c86fcd9dc21edd0570eb07f Author: David Brooks Date: Wed Jun 21 16:35:20 2017 +1200 Correctly refer to the PythonQt library (#1324). commit f62b2482c67cee41bc987742bd6872b071bb5a66 Author: David Brooks Date: Wed Jun 21 16:34:43 2017 +1200 Suppress warning messages from compile (#1324). commit 8a2f42cb03d756979b9d5cd4b03e3041b874b0ed Author: David Brooks Date: Wed Jun 21 16:33:49 2017 +1200 We do depend on the order that Python plugins are declared... (#1306). commit 56dc63395621c97b79b982c4c3a326dda927fd5c Author: David Brooks Date: Wed Jun 21 16:33:06 2017 +1200 Reinstate INCLUDE_DIRS parameter to specify additional include directories (#1306). commit 103c7571cb2077bd8e89340011f31bfe538b2291 Author: David Brooks Date: Wed Jun 21 16:30:29 2017 +1200 Known include directories are now implicitly added (#1306). commit 50cdd318683a4f1f120665a2e22531e94ea5fd61 Author: David Brooks Date: Wed Jun 21 16:27:43 2017 +1200 Put CTK code used by PythonQtSupport plugin inside `./src` directory (#1324). commit e2ac0894abe926e1c9208f9a89fbf65ce02583ba Author: David Brooks Date: Wed Jun 21 14:00:13 2017 +1200 Remove unused `diff` files (#1324). commit c444dc1570084cb888b8b2010242ac47ddf3d7f8 Author: David Brooks Date: Wed Jun 21 13:30:41 2017 +1200 OAuth plugin sources were missing after merge (#1306). commit 675fad0ba04ec1545da79cf34e279b08132df9af Author: David Brooks Date: Wed Jun 21 13:15:19 2017 +1200 Upgrade IPython to version 6.1.0 (#1324). commit ca86adb4c4fe7ca0640c0a19bf0f2afd3ab93db6 Merge: 8e4325254 978bb9bf1 Author: David Brooks Date: Wed Jun 21 13:01:28 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 978bb9bf1cb0cb946e0652f915a83f2e65c537b5 Merge: 9074669ee b9845b3a2 Author: Alan Garny Date: Tue Jun 20 23:59:49 2017 +0200 API and third-party libraries: took advantage of our new packaging mechanism (closes #1306). commit b9845b3a206002eb50667cbf1b3d5982ded836af Author: Alan Garny Date: Tue Jun 20 23:12:25 2017 +0200 Travis CI: finally got things to work on macOS! commit 99699f1335c60b55aee6741f5cc04f547d686bc7 Author: Alan Garny Date: Tue Jun 20 23:06:39 2017 +0200 Travis CI: finally got things to work on macOS! commit 5a5ca41d5fbaff4d245848efcccb4479465e2751 Author: Alan Garny Date: Tue Jun 20 19:25:55 2017 +0200 Travis CI: some debug information. commit 3f80c5ca208eaf8048f7413f118538870326eb5b Author: Alan Garny Date: Tue Jun 20 19:24:33 2017 +0200 QtWebKit is needed as a module on Windows. commit b2a21340cb6824e0b6dbd9f9bcb6eb7e7151bfea Author: Alan Garny Date: Tue Jun 20 17:46:54 2017 +0200 Travis CI: trying to get things to work on macOS... commit 7597ce66f255e5257e3ee806ab7e5fba6859f9c4 Author: Alan Garny Date: Tue Jun 20 16:25:16 2017 +0200 Travis CI: just trying to get things to work on macOS... commit 2cdc945ad664006b2552c6ac2757e2c7fd487ff0 Author: Alan Garny Date: Tue Jun 20 15:44:15 2017 +0200 Travis CI: final macOS-related issue?... commit a025548f07a1d1b706cf965acf88f48b33deb1f4 Author: Alan Garny Date: Tue Jun 20 11:27:54 2017 +0200 Travis CI: finally got it on macOS?! commit 9ad3f3995733908978532a52bc95d3e08e531a55 Author: Alan Garny Date: Tue Jun 20 10:40:53 2017 +0200 Travis CI: trying to get things to work on macOS. commit 8e4325254e88a28750be27920d907ba65b569cfa Merge: bad17847a 9074669ee Author: David Brooks Date: Tue Jun 20 20:29:34 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit bad17847a89d6261ddacb4b9c3ea14706dd13150 Author: David Brooks Date: Tue Jun 20 20:28:15 2017 +1200 Upgrade numpy to version 1.13.0 (#1324). commit 85944e42e88e4745cbe22af13c50efc931755a08 Author: David Brooks Date: Tue Jun 20 20:27:45 2017 +1200 Get IPython running under Windows (#1324). commit 8f8420d798b6f49bef6e948f6839b7f4f8aef08e Author: Alan Garny Date: Tue Jun 20 10:03:21 2017 +0200 Oops, had broken things on macOS (#1306). commit 2c014bb790b3764627cac0312dac8051596bfd82 Author: Alan Garny Date: Tue Jun 20 09:30:42 2017 +0200 Travis CI: finally (?) got things to work on macOS? commit 9481e41c064e1cdda155e8ee23d29cf1de0a8018 Author: Alan Garny Date: Tue Jun 20 09:19:44 2017 +0200 Travis CI: trying to see what has changed on Travis CI in terms of available libraries since this is causing us problems on macOS. commit b67e6be7486111fe6f10d31ca4b81c39e0e404e0 Author: Alan Garny Date: Tue Jun 20 09:19:23 2017 +0200 Travis CI: trying to see what has changed on Travis CI in terms of available libraries since this is causing us problems on macOS. commit 00597fe33b99f4418a4cd70d467f4adb4b1d2589 Author: Alan Garny Date: Tue Jun 20 08:43:51 2017 +0200 Travis CI: trying to understand why tests now fail on macOS. commit 58c5fd9a8cea16213b3dc9e06e63605fb9b74be8 Author: Alan Garny Date: Tue Jun 20 08:20:59 2017 +0200 Our new way of building our API and third-party libraries requires at least CMake 3.3 (#1306). commit c3f8b54629a4bdff7d96ddfb5d626ea25156d6b6 Author: Alan Garny Date: Tue Jun 20 07:45:21 2017 +0200 Travis CI: some minor cleaning up. commit 9f77156c265dfa06d0ac0be218879d32db8431f1 Author: David Brooks Date: Tue Jun 20 11:56:46 2017 +1200 Tweaks for Windows build of Python libraries (#1085). commit b3209190f8249ac9a98dd5dbe6ec2baac8c98fcf Author: David Brooks Date: Tue Jun 20 11:21:30 2017 +1200 Don'\''t start a matplotlib exec() loop when running under PythonQt (#1324). commit 677b2d7125729ea7253baaa16872b6acfe1cb4b0 Author: Alan Garny Date: Tue Jun 20 01:08:30 2017 +0200 Make sure that linking to non-prebuilt API / third-party libraries works straightaway on Linux (#1306). The problem was that we were linking to a version of the library that might or not have already been physically present. commit 0d7112387dfcc3f1dcc06fddde23237a6799731e Author: Alan Garny Date: Tue Jun 20 00:14:23 2017 +0200 Travis CI: addressed a Linux-specific issue when it comes to build QScintilla (#1306). commit b098604467837ca743b7e7bb652f0a4e61cfe5c6 Author: Alan Garny Date: Mon Jun 19 22:47:23 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit db582dff44abcd8b0f9fb9857e4162ab73e6d643 Author: Alan Garny Date: Mon Jun 19 22:27:02 2017 +0200 Travis CI: it looks like we might be needing a more recent version of CMake on Linux. Using CMake 3.2, we are getting the following error when trying to build our QScintilla package: CMake Error at /usr/share/cmake-3.2/Modules/ExternalProject.cmake:1487 (add_custom_command): add_custom_command called with OUTPUT containing a "<". This character is not allowed. Call Stack (most recent call first): /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2165 (ExternalProject_Add_Step) /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2325 (_ep_add_build_command) src/plugins/thirdParty/QScintilla/CMakeLists.txt:101 (ExternalProject_Add) commit 1825720f0d162ef26a574b8222570278878eb28e Author: Alan Garny Date: Mon Jun 19 22:24:40 2017 +0200 Travis CI: it looks like we might be needing a more recent version of CMake on Linux. Using CMake 3.2, we are getting the following error when trying to build our QScintilla package: CMake Error at /usr/share/cmake-3.2/Modules/ExternalProject.cmake:1487 (add_custom_command): add_custom_command called with OUTPUT containing a "<". This character is not allowed. Call Stack (most recent call first): /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2165 (ExternalProject_Add_Step) /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2325 (_ep_add_build_command) src/plugins/thirdParty/QScintilla/CMakeLists.txt:101 (ExternalProject_Add) commit 1ff8e5c43f11a4e578b25f21f04229d0b8fac31d Author: Alan Garny Date: Mon Jun 19 21:50:40 2017 +0200 Travis CI: build our QScintilla package on Linux. commit e058b779ca90a25066c12fb12e6c7a950f20a5d0 Author: Alan Garny Date: Mon Jun 19 21:25:29 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit 2c0bab8144b278df0671bd4eb0e665bbdd3a337f Author: Alan Garny Date: Mon Jun 19 21:09:52 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit bdbb0bda69e828271a70ddaa67e06a3a0d6b407e Author: Alan Garny Date: Mon Jun 19 19:55:25 2017 +0200 Travis CI: checking their forthcoming Linux image (see https://blog.travis-ci.com/2017-06-19-trusty-updates-2017-Q2). commit f006a4763a95f7927926fcbe22e03d0d16d2365b Author: Alan Garny Date: Mon Jun 19 19:17:40 2017 +0200 Travis CI: ok, not quite sure how to '\''fix'\'' the __cxa_throw_bad_array_new_length@Qt_5 issue. So, just revert to what we know works. commit ffc890795814ab4e2b106e950bfa338bce812258 Author: Alan Garny Date: Mon Jun 19 18:53:16 2017 +0200 Travis CI: some further macOS checks. commit e5f21c69bd1c7bad8b3d768ce273ae91e6c45f2e Author: Alan Garny Date: Mon Jun 19 18:52:13 2017 +0200 Travis CI: some further macOS checks. commit 148feff79da975743d77a30dd296cf54d5ad4ec3 Author: Alan Garny Date: Mon Jun 19 18:47:42 2017 +0200 Travis CI: oops, we were installing the wrong package (see commit 617f470). commit 3c92ce73f2eac87ab12b500341a6eba15bc5828d Author: Alan Garny Date: Mon Jun 19 17:53:17 2017 +0200 Travis CI: trying to understand why our tests now fail on macOS. commit 7953853474d5fc26d5b085e77ffcf348b97ca93a Author: Alan Garny Date: Mon Jun 19 17:49:48 2017 +0200 Some minor cleaning up. Actually, this is related to commit 617f470. commit 617f4702d81c0551dd314a38db497e7db7c06cea Author: Alan Garny Date: Mon Jun 19 17:28:47 2017 +0200 Travis CI: now, because of the way we build our API and third-party libraries, we seem need to need to install lib32stdc++-4.9-dev on Linux (#1306). commit a34ec56c1e2188a9d38cb7a0124a4c1d78f92aec Author: Alan Garny Date: Mon Jun 19 16:53:52 2017 +0200 We don'\''t need to ignore '\''bin'\'' and '\''lib'\'' folders anymore (#1306). commit d67fa7e48282d18cb73284ec1c1cba9972894e97 Author: Alan Garny Date: Mon Jun 19 16:43:27 2017 +0200 Some minor cleaning up. commit 69b4b8402ad7a66c683765c0991bea7493909c1b Author: Alan Garny Date: Mon Jun 19 16:35:34 2017 +0200 Slight update to our downloads page (#1306). commit 625f32791a0c0300e536609f83ce43ee1cfba46f Author: Alan Garny Date: Mon Jun 19 16:25:36 2017 +0200 Make sure that we clean everything before packaging OpenCOR. commit 4eccdcdc313ed9efe77ccd7d9c8a5bc9149bc73d Author: Alan Garny Date: Mon Jun 19 15:25:30 2017 +0200 QtWebKit package: new binaries (#1306). commit 3afa863099f0f090e1a15380a80152f86afa37d6 Author: Alan Garny Date: Mon Jun 19 13:04:23 2017 +0200 QtWebKit package: get ready to build it (#1306). commit b5c5e259fa2dc15c16094f40d5901b29a22c4555 Author: Alan Garny Date: Mon Jun 19 13:02:47 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit f0d3a2c3ad876b03a93f5f0b9752aafc954885b9 Author: David Brooks Date: Mon Jun 19 22:49:04 2017 +1200 Actually provide a patch file for matplotlib... commit c8e94797c927288a403aefe879f4a8d08bf895da Author: Alan Garny Date: Mon Jun 19 11:05:02 2017 +0200 QtWebKit package: get the package to depend on the correct version of ICU on Linux (#1306). commit a50c1d892f2452c95c2d146988ac7e7c646ca89b Author: Alan Garny Date: Mon Jun 19 10:32:31 2017 +0200 Make sure that qmake/make/nmake/jom command works properly (#1306). commit c844a8aa9720fbc76643483f3e59b36f7ea2958e Author: Alan Garny Date: Mon Jun 19 10:27:00 2017 +0200 Make sure that qmake/make/nmake/jom command works properly (#1306). commit 22ee9a2dff7d813c1dd25817ab0746272841a137 Author: Alan Garny Date: Mon Jun 19 10:07:49 2017 +0200 Make sure that qmake/make/nmake/jom command works properly (#1306). commit 037bd16ad3162bfbc445426bba3e0b36ad2c7bde Author: Alan Garny Date: Sun Jun 18 21:23:50 2017 +0200 Some minor cleaning up. commit f9102e6c64ae85d3d312090c2b839d2871269ec9 Author: Alan Garny Date: Sun Jun 18 20:10:45 2017 +0200 Some minor cleaning up. commit dc0015bc74281b1aa10694a01ac6e3118a8a8038 Author: David Brooks Date: Sun Jun 18 21:38:10 2017 +1200 Upgrade matplotlib to version 2.0.2 commit 1e3c794ccc7bdd61bf2cbf457556356571ddd301 Author: Alan Garny Date: Sat Jun 17 23:26:06 2017 +0200 QtWebKit package: slight update to the README.rst file (#1306). commit 3c169de5a24238f3978e6faec16204b60f8d35c4 Author: Alan Garny Date: Sat Jun 17 21:22:41 2017 +0200 Make sure that libstdc++.so.6 gets properly deployed on Linux. commit b8708f2bebedd347da7f45a49dc78c27c3bceae0 Author: Alan Garny Date: Sat Jun 17 20:51:19 2017 +0200 Some minor cleaning up. commit eb6f188bee368d86c29624212946240d74546b05 Author: Alan Garny Date: Sat Jun 17 20:24:18 2017 +0200 Some minor cleaning up. commit 37f75db8705b4b55d0ada40398e24c88e50ec43b Author: Alan Garny Date: Sat Jun 17 20:07:17 2017 +0200 Some minor cleaning up. commit 06bead547bc763b026b6c7a874faa29420bf3cda Author: Alan Garny Date: Sat Jun 17 19:52:34 2017 +0200 Revert "Some minor cleaning up (#1306)." This reverts commit 981c3977a36bb9a6cd2bf5793b6147543331f801. commit 981c3977a36bb9a6cd2bf5793b6147543331f801 Author: Alan Garny Date: Sat Jun 17 18:57:17 2017 +0200 Some minor cleaning up (#1306). commit b628e29c2e7d75c8024713415ebc14e8e3e7c191 Author: Alan Garny Date: Sat Jun 17 16:35:04 2017 +0200 Make sure that we can always build diff_match_patch on Windows. Indeed, depending on what header files have been included prior to including diff_match_patch.h, some macros may have been defined on Windows, making it impossible to compile a file that includes diff_match_patch.h. We therefore undefine those macros... (We also temporarily disable an MSVC warning.) commit ae05d409e2d469b92fc82fa8727175da60fad761 Author: Alan Garny Date: Sat Jun 17 14:05:04 2017 +0200 Don'\''t need to disable warning #4267 on Windows, except when it comes to LLVM+Clang. commit 867282751ed0f525562bbb64a708c8daaaf56ae6 Author: Alan Garny Date: Sat Jun 17 12:01:11 2017 +0200 Some minor cleaning up. commit f2bcd5c1332f313c3eee31e2461868521b46405c Author: Alan Garny Date: Sat Jun 17 11:53:35 2017 +0200 QtWebKit package: make sure that we can get access to the ICU libraries on Windows (#1306). commit 05d9a42867f8a315e1951ed41d0dda061958e2e0 Author: Alan Garny Date: Sat Jun 17 00:42:19 2017 +0200 Some minor cleaning up. commit 027ce5a8c7c5244a4e0ef884da0b6c0e2fba8c14 Author: Alan Garny Date: Sat Jun 17 00:28:22 2017 +0200 QtWebKit package: also deploy the ICU libraries on Windows (#1306). commit 399615e48d37409adf01d2ec09460738d3474d40 Author: Alan Garny Date: Fri Jun 16 15:55:33 2017 +0200 QtWebKit package: account for the fact that, on Windows, the QtWebKit build system builds both the release and debug versions at the same time (#1306). commit 6cdb7e6f3191ca76baf49eb523c497d56e99ee75 Author: Alan Garny Date: Fri Jun 16 15:44:40 2017 +0200 QtWebKit package: account for the fact that, on Windows, the QtWebKit build system builds both the release and debug versions at the same time (#1306). commit 9cf42bf6a203252868b6e75dee9ef39706bb4b65 Author: Alan Garny Date: Fri Jun 16 14:40:31 2017 +0200 QtWebKit package: oops, only shared libraries should be in the bin directory. Imported libraries should in the lib directory (#1306). commit ee2eee4292a4e7af504a30c4ceac5df48a8ea1e7 Author: Alan Garny Date: Fri Jun 16 14:33:05 2017 +0200 QtWebKit package: make sure that we deploy our libraries in the right place on Windows (#1306). commit 670af70dcceea6c984dd710f10f0fd2bf81fcc28 Author: Alan Garny Date: Fri Jun 16 14:02:58 2017 +0200 QtWebKit package: now have release binaries for Windows (#1306). commit 9ad8fa00d4a7c2fbbccaf8518ff54b06edcc300f Author: Alan Garny Date: Fri Jun 16 14:01:14 2017 +0200 QtWebKit package: make sure that our header patch works fine on Windows (#1306). commit 7125d4307de5c6170dc82f6241014cb6926e571a Merge: 18421a116 7dc6774b0 Author: Alan Garny Date: Fri Jun 16 12:59:11 2017 +0200 Merge branch '\''issue1306'\'' of https://github.com/agarny/opencor into issue1306 commit 18421a116145281b40a1219b67a644bcabfcf18a Author: Alan Garny Date: Fri Jun 16 12:58:49 2017 +0200 QtWebKit package: make sure that our CMake files get patched on Windows (#1306). commit 7dc6774b016fc9763dca7211d785babbdcd3726b Author: Alan Garny Date: Fri Jun 16 11:05:38 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit 1e8a1aa9b38fc4677d13dada6ba1d536cf09d797 Author: David Brooks Date: Fri Jun 16 20:59:28 2017 +1200 Update PythonQt to version 3.2.0 (#1324). commit c58eb777560c14d481b56e0053e6767e9dbadf21 Author: David Brooks Date: Fri Jun 16 20:58:15 2017 +1200 Redirect Python logging output to the console (#1324). commit 8d19de927d49040216003142627ada88ca73cc4d Author: Alan Garny Date: Fri Jun 16 10:45:37 2017 +0200 QtWebKit package: new Linux binaries (#1306). commit c13105b96db7520eec2ef2889aa8e17dacf681e0 Author: Alan Garny Date: Fri Jun 16 10:26:14 2017 +0200 QtWebKit package: make sure that our QtWebKit header files have the expected contents (#1306). commit 9461dc68daeb0c880817dc34d595be3f196916ab Author: David Brooks Date: Fri Jun 16 11:08:55 2017 +1200 Our mods to PythonQt mean we can revert to using method calls to get QWidget properties in `matplotlib` (#1324). commit 78ac4db6bba085b838b6478199d86e000ffcc501 Author: David Brooks Date: Fri Jun 16 10:08:16 2017 +1200 The Python console window doesn'\''t depend on OpenCOR'\''s classes being wrapped (#1324). commit 43ef3a442aa668217ea45d4ba3aaf5651c8ef468 Author: Alan Garny Date: Thu Jun 15 19:26:56 2017 +0200 Some minor cleaning up. commit b41e0b098f98cfdf8d13eccd600049f98582987d Author: Alan Garny Date: Thu Jun 15 18:22:10 2017 +0200 QtWebKit package: new macOS binaries (#1306). commit 0727812794a2399bc96bc36ce23d41f0a1164415 Author: Alan Garny Date: Thu Jun 15 17:57:45 2017 +0200 QtWebKit package: distinguish between release and debug mode on macOS (#1306). commit b603d064550fb8c4041defa3e36346e9716c13a6 Author: Alan Garny Date: Thu Jun 15 17:30:08 2017 +0200 Some minor cleaning up (#1306). commit d7735ac30ba68042f3e949931a16847ef7dabe3a Author: Alan Garny Date: Thu Jun 15 17:19:02 2017 +0200 Don'\''t explicitly ask for external projects to be built silently (#1306). commit f0461dcfc6ca425d82baae72d82982dcede0339b Author: Alan Garny Date: Thu Jun 15 17:18:08 2017 +0200 Ask qmake to turn off all warnings (#1306). commit eea222e4a3fcafb2529c49fcd44511fa1eace8bf Author: Alan Garny Date: Thu Jun 15 16:45:26 2017 +0200 Some minor cleaning up. commit 34a7693435620c46d64a8e26a0092e454b9294df Author: Alan Garny Date: Thu Jun 15 13:29:03 2017 +0200 QtWebKit package: we need ICU v57.1 on Windows (#1306). commit 5af6912d5d87bf8ef6b974b5b603e30644e518b1 Author: Alan Garny Date: Thu Jun 15 13:03:23 2017 +0200 QtWebKit package: can now build on Linux (#1306). commit 57b7e218ac553aa6d0cb2567e252dd0158f8c90f Author: Alan Garny Date: Thu Jun 15 10:22:34 2017 +0200 QtWebKit package: can now build on Linux (#1306). commit 5095726324093f5009f2264946062e4e2bd6fef0 Author: Alan Garny Date: Wed Jun 14 18:31:23 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit 23d7aa7c920dcafdb269add348d8b3c27ccd4e09 Author: Alan Garny Date: Wed Jun 14 18:23:44 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Linux (#1306). commit 0e17c9fa7a81766869736f89a20c8518dcfed16a Author: Alan Garny Date: Wed Jun 14 17:43:25 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit 9f43ff34ba7ed124ea00f2ef025c9d50d91fbba5 Merge: 6765e2132 9e3be90b5 Author: Alan Garny Date: Wed Jun 14 17:34:40 2017 +0200 Merge branch '\''issue1306'\'' of https://github.com/agarny/opencor into issue1306 commit 6765e2132c42cf8d03bed34d920e2a388b260df3 Author: Alan Garny Date: Wed Jun 14 17:34:16 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows (#1306). commit 9e3be90b5c36237bebb25090159ebfbf8ecf4773 Author: Alan Garny Date: Wed Jun 14 15:26:10 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit e6040eea121ff2e7bc3748de11c65f5dd6f04021 Author: Alan Garny Date: Wed Jun 14 14:00:32 2017 +0200 Some minor cleaning up. commit abe66bb2f741d116e5ac8f2bd2fc85d05ef98bba Author: Alan Garny Date: Wed Jun 14 11:36:51 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows (#1306). commit fdce72e24a52d2c3804b9330371dc0d74bed01d0 Author: Alan Garny Date: Wed Jun 14 11:27:51 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows (#1306). commit 33d01fc99bb6d16d6189a81ab87de3697da4961e Author: Alan Garny Date: Wed Jun 14 11:22:18 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit f92a86cb13e665a5c62b6c3d32033c7d7264ea64 Author: Alan Garny Date: Wed Jun 14 10:58:31 2017 +0200 QtWebKit package: make sure that we can build our patch program on Windows (#1306). commit b0d07e232b9b3ec455c560a0e00c77a19cf48168 Author: Alan Garny Date: Wed Jun 14 10:13:18 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit d40cbf53720add9c2cb47d22ad2d565ba26a843f Author: Alan Garny Date: Wed Jun 14 10:12:16 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit 7c5fcbe6722f38d8f60cdbd4b460f7d5f31b1ee9 Author: Alan Garny Date: Wed Jun 14 10:02:50 2017 +0200 QtWebKit package: slight update to our README.rst file (#1306). commit 6176f6dc5b6442130718067cee958b23626338cf Author: Alan Garny Date: Wed Jun 14 09:29:32 2017 +0200 QScintilla and Qwt packages: fixed RPATH issue on macOS and therefore generated new binaries (#1306). Indeed, by default, to build those libraries using qmake results in Qt’s path being hard-coded while we clearly want to refer to our own copy of Qt. If we don’t do this, then we will get a couple of warnings like the ones below when, for example, running `./OpenCOR -s`: objc[23491]: Class QCocoaPageLayoutDelegate is implemented in both /Users/Alan/Work/Programming/OpenCOR/build/OpenCOR.app/Contents/Framewor ks/QtPrintSupport.framework/Versions/5/QtPrintSupport (0x113d09ec0) and /Applications/Qt/5.6/clang_64/lib/QtPrintSupport.framework/Versions/5/Qt PrintSupport (0x114a3bec0). One of the two will be used. Which one is undefined. objc[23491]: Class QCocoaPrintPanelDelegate is implemented in both /Users/Alan/Work/Programming/OpenCOR/build/OpenCOR.app/Contents/Framewor ks/QtPrintSupport.framework/Versions/5/QtPrintSupport (0x113d09f10) and /Applications/Qt/5.6/clang_64/lib/QtPrintSupport.framework/Versions/5/Qt PrintSupport (0x114a3bf10). One of the two will be used. Which one is undefined. commit b1768424d9a52bd04367e4404fed3fe9b6cdb01f Author: Alan Garny Date: Wed Jun 14 09:29:04 2017 +0200 Some minor cleaning up. commit ef79b1ba263d6d922f2f978029ed07ec0e151f2c Author: Alan Garny Date: Wed Jun 14 09:12:11 2017 +0200 Some minor cleaning up. commit ffa1d6c1ff4f04ea4de0d974377385997ac6dd39 Author: Alan Garny Date: Tue Jun 13 18:54:36 2017 +0200 Back to building QtWebKit (#1306). commit 96807f091824cf4644a2f8f331fcfbc90a98f0dc Author: Alan Garny Date: Tue Jun 13 18:53:09 2017 +0200 LLVMClang package: new binaries (with new file name) (#1306). commit fda86243b363ae84a59a9dbf5c0e3bb9033c552e Author: Alan Garny Date: Tue Jun 13 10:22:56 2017 +0200 LLVMClang package: renamed the file name of our package (#1306). commit a8ab02de8b589fcc484260c2761f137e8080e0de Author: Alan Garny Date: Tue Jun 13 10:20:35 2017 +0200 LLVMClang package: renamed the file name of our package (#1306). commit 84dd20a95b26106aa14cfe4c5cce46e3b96e62fb Author: Alan Garny Date: Tue Jun 13 10:08:59 2017 +0200 LLVMClang package: renamed the file name of our package (#1306). commit 7951a60f768102ec47deb76e96971fd62063d729 Author: Alan Garny Date: Mon Jun 12 17:23:49 2017 +0200 QtWebKit package: can now build on macOS (#1306). commit 715950707b9632a9188c1fcc31680efaa82a1026 Author: Alan Garny Date: Mon Jun 12 16:13:46 2017 +0200 Some minor cleaning up. commit 373bfdd75a581689abf80b0ece6a460d51619182 Author: Alan Garny Date: Mon Jun 12 16:13:11 2017 +0200 Some minor cleaning up. commit a20ae09642e622c03997d238dc1187b7b3ffb184 Author: Alan Garny Date: Mon Jun 12 14:19:58 2017 +0200 QtWebKit package: make sure that our CMake files are properly patched (#1306). Indeed, they are generated in such a way that they can be used within the Qt file structure while we want to use them within the OpenCOR file structure. commit 711d212f3acc51170e270433ff09f2eae58ec589 Author: Alan Garny Date: Mon Jun 12 11:31:05 2017 +0200 Some minor cleaning up. commit b1c6dafadf42e9d66a7f68af09cd301bc5a9addc Author: Alan Garny Date: Mon Jun 12 11:06:54 2017 +0200 QtWebKit package: make sure that QtWebKit itself and its CMake files can be found (#1306). commit bb4de606ebf21b0d395737aaa4226896297cba98 Author: Alan Garny Date: Mon Jun 12 11:04:19 2017 +0200 Oops, forgot to update our MAKE_NMAKE_COMMAND and MAKE_JOM_COMMAND variables for parallel compilation (#1306). commit 65639001376944d0b4f5b2546bc962ccf80416b0 Author: Alan Garny Date: Sun Jun 11 10:07:01 2017 +0200 Re-enable QtWebKit-based features. commit 0fad5a5c3bc4c329732e7c7136a22acdc5f98833 Author: Alan Garny Date: Sun Jun 11 09:36:06 2017 +0200 QtWebKit package: make sure that CMAKE_PREFIX_PATH is properly updated (#1306). commit 6526f0986ffecaece4611a0761fc81d7b4d5a6b8 Author: Alan Garny Date: Sat Jun 10 20:15:58 2017 +0200 QtWebKit package: first (non-working) binaries for macOS (#1306). commit 46df1d7cc3432ade6a04836bbd2e1f998f7839ab Author: Alan Garny Date: Sat Jun 10 19:58:26 2017 +0200 Some minor cleaning up. commit f7e03a5247fbb6a1ab0232118e82366bc704e76c Author: Alan Garny Date: Sat Jun 10 17:37:26 2017 +0200 Some minor cleaning up. commit bcc4146aadc9affc908e93f46fe13df4fd649e36 Author: Alan Garny Date: Sat Jun 10 17:31:07 2017 +0200 Some minor cleaning up. commit e74cd7c41fa23a4776f255f96c2355f5e15f7175 Author: Alan Garny Date: Sat Jun 10 17:30:08 2017 +0200 Well, OpenSSL cannot, on Windows, be built using jom, so use nmake for it (#1306). commit 9904dfb5e1e21883a2ebe53cf9904a84ba57cbc7 Author: Alan Garny Date: Sat Jun 10 16:21:30 2017 +0200 Optime the building of our packages that need to be built without CMake (#1306). commit 6a02df503e989437b055fe82bbc10a09683dc59f Author: Alan Garny Date: Sat Jun 10 11:03:00 2017 +0200 QtWebKit package: we actually have two libraries in this package (#1306). commit b5dce187e049b0a60d40dd2c7940feb52d204708 Author: Alan Garny Date: Sat Jun 10 10:39:48 2017 +0200 Some minor cleaning up. commit 023e3ea4fdc3b423ce0a9756aa1ccadcb6bc31b2 Author: Alan Garny Date: Sat Jun 10 10:39:06 2017 +0200 QtWebKit package: getting ready to build on macOS (at least) (#1306). commit ff0e3f4c519f30a62629ce20858d9c63db887df8 Author: Alan Garny Date: Sat Jun 10 00:34:04 2017 +0200 Make sure that the value of our QT_QMAKE variable is a proper filename (and not simply Qt5::qmake). This is needed for building QtWebKit (#1306). commit 33d41d8e9213ed859a19d0ee28986ccee4188b44 Author: Alan Garny Date: Sat Jun 10 00:04:26 2017 +0200 Improved the building of our QScintilla and Qwt packages on Windows. Also made sure that the OpenSSL package gets cloned in the right place (#1306). commit dd7337ace038ad061ab083708b28b4d74707587d Author: Alan Garny Date: Fri Jun 9 19:59:12 2017 +0200 QtWebKit: some kind of template that gets us to build on macOS (#1306). commit 7de0ab333493f3414cf8b7781bd9a2d81b8ad177 Author: Alan Garny Date: Fri Jun 9 19:22:16 2017 +0200 Packages: on macOS, we don'\''t need to specify the deployment target (#1306). Indeed, it looks like only OpenCOR itself needs to be built with that piece of information. commit f4e398f20cbb87bcd88707ec74023a91bb2720fe Author: Alan Garny Date: Fri Jun 9 18:39:11 2017 +0200 QtWebKit package: getting ready to build on macOS (at least) (#1306). commit fdd616710636204fb4dd03cfed4f575d46c9f9d2 Author: Alan Garny Date: Fri Jun 9 18:03:08 2017 +0200 Some minor cleaning up. commit e9148d178b2b3b1e699ce5c45507ff28c7dbed60 Author: Alan Garny Date: Fri Jun 9 17:11:07 2017 +0200 Properly add QtWebKit to the build system (#1306). commit 7d2e21f60cdb0db3d461e0ee2712c7b13863ad64 Author: Alan Garny Date: Fri Jun 9 17:05:09 2017 +0200 QtWebKit package: slight update to its README.rst file (#1306). commit f4708c86e89018594966a01acbe0150fc58da26e Author: Alan Garny Date: Fri Jun 9 16:51:09 2017 +0200 Getting ready to build the QtWebKit package (#1306). commit 18136540a74f146ed8bde4ed69e0933fc2aa8200 Author: Alan Garny Date: Fri Jun 9 16:33:40 2017 +0200 Qwt package: argh, the debug version wasn'\''t being built properly on Windows (#1306). commit 88ab815da71e750b57decbc46680b39a0b354d0c Author: Alan Garny Date: Fri Jun 9 15:32:26 2017 +0200 Qwt package: prevent warnings when building on Windows (#1306). commit b7d2fb6d1f39861d79ac00f08fcc0c4dc3f22425 Author: Alan Garny Date: Fri Jun 9 11:35:16 2017 +0200 Make sure that we can build our CellML file runtime class (#1306). commit 45cd075e33a83be3bcb804289d3446d81ddb7469 Merge: e4bb3ce1f 9074669ee Author: Alan Garny Date: Fri Jun 9 10:39:56 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 9074669eece1950861aef982c3b24f47cb677ae0 Merge: 5ac1374bd e4f0c6b77 Author: Alan Garny Date: Fri Jun 9 10:38:07 2017 +0200 Plugins: plugins are now finalised in reverse order of initialisation (closes #1331). commit e4f0c6b779aecaffdad7feb8df166ce63183c429 Author: Alan Garny Date: Fri Jun 9 10:03:32 2017 +0200 Some minor cleaning up. commit ebabc4eadb0a7ecaf740c6b1c10702145942f9e8 Author: David Brooks Date: Fri Jun 9 13:54:28 2017 +1200 Set the initial font size for our IPython window (#1324). commit 638e1613912b8a8ff22bc5882af6f491099add65 Author: David Brooks Date: Fri Jun 9 13:53:30 2017 +1200 Tidy up IPython widget creation code (#1324). commit 1286190b466fa4d9ab8824e1c137e7bc54168a27 Author: David Brooks Date: Fri Jun 9 13:52:00 2017 +1200 We need to explicitly delete our IPython container window when finalising (#1324). commit 4e649c27370379f800e0adf80dffff0188a9add4 Merge: 2cc4a100a 2f7581960 Author: David Brooks Date: Fri Jun 9 13:46:53 2017 +1200 Merge branch '\''issue1331'\'' into pythonplugin commit 2f75819603437f86f09fcca8d78593c3959051d8 Author: David Brooks Date: Fri Jun 9 13:42:26 2017 +1200 Finalise plugins in the reverse order to their initialisation (#1331). commit e4bb3ce1f076e2b3f2727e0c30e2a6e1aa171ffc Author: Alan Garny Date: Thu Jun 8 23:21:03 2017 +0200 Re-enable all non-QtWebKit plugins (#1306). commit 380c9c7a62561fe8df0fabb37dc168dcca92351f Author: Alan Garny Date: Thu Jun 8 23:19:30 2017 +0200 LLVMClang package: Linux binaries for Windows (#1306). commit a4b9d123b8dcb194b20907d8d83bc4cdbd2af687 Author: Alan Garny Date: Thu Jun 8 23:19:07 2017 +0200 LLVMClang package: debug binaries for Windows (#1306). commit 8212dd5a6ea0919e7090c910c56d1711a73efc14 Author: Alan Garny Date: Thu Jun 8 19:53:44 2017 +0200 LLVMClang package: release binaries for Windows (#1306). commit f70b77d1215ed48dd88dec8939e785084225b712 Author: Alan Garny Date: Thu Jun 8 18:43:14 2017 +0200 LLVMClang package: new binaries for macOS (#1306). commit d31f6fdf427fc1b9e04ed1859814d519b5e0d36f Author: Alan Garny Date: Thu Jun 8 16:05:02 2017 +0200 LLVMClang package: use our v4.0.0 Git tag (#1306). commit 2ff5d6667a7784cc4085b021dc46aa018b163a4d Author: Alan Garny Date: Thu Jun 8 15:56:54 2017 +0200 LLVMClang package: on Windows, we want our library to be named LLVMClang.4.dll/.lib (#1306). The idea is so that it can be distinguished from our LLVMClang plugin, which filename is LLVMClang.dll. commit 0a4ef55a757a22da0586262791c8e9ce2c59cbdf Author: Alan Garny Date: Thu Jun 8 10:09:12 2017 +0200 LLVMClang package: build only one single shared library now (#1306). commit a36c66988bcdb0a9d9eb93b7bc9634b59a07b343 Author: Alan Garny Date: Thu Jun 8 09:29:51 2017 +0200 LLVMClang package: build only one single shared library now (#1306). commit e8ab739a11f77c977e9024acc1ebd768b56daafa Author: Alan Garny Date: Thu Jun 8 00:54:23 2017 +0200 LLVMClang package: only build one shared library (#1306). We used to build both an LLVM and Clang shared library, but although it works fine on Linux and macOS, it proves crazy on Windows. Indeed, our Clang shared library would need access to loads of LLVM symbols while we only expose those that we need in OpenCOR. To expose all the symbols needed by Clang would be a lot of work, hence we now build only one shared library instead. commit 61b099f44b89805c0506979467bc93f48d53a4ee Author: Alan Garny Date: Wed Jun 7 23:04:31 2017 +0200 LLVMClang package: allow for big objects on Windows (#1306). commit fabf57334c9d2a46b69b3cee674944873665fe71 Author: Alan Garny Date: Wed Jun 7 21:17:51 2017 +0200 Making sure that we can build our LLVMClang package on Windows (#1306). commit eae8101dbae0cf1932c18f1a90a77ce1ffa0cc3e Author: Alan Garny Date: Wed Jun 7 19:04:30 2017 +0200 Back to build our LLVMClang package only (#1306). commit 2cc4a100adac1a25fbcfd66a3fcb518732a77673 Merge: b462910da 5ac1374bd Author: David Brooks Date: Wed Jun 7 14:17:10 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit b462910daa4c13d8fed25f0c3a8028d260e4ae9b Author: David Brooks Date: Tue Jun 6 21:55:25 2017 +1200 Use an IPython console for Python (#1324). commit 5bf45813d7003ba00302db3c7d1959b761f07522 Author: Alan Garny Date: Tue Jun 6 16:34:19 2017 +0200 QtWebKit package: removed our old CMake code (#1306). commit 029be182ccf2a80076bd268ec4dc5d129117cff0 Author: Alan Garny Date: Tue Jun 6 15:50:47 2017 +0200 Don'\''t build any plugins anymore (#1306). So that we can then focus on our QtWebKit package. commit 0fb0795ef283d3872cc66bb005964808f4043101 Author: Alan Garny Date: Tue Jun 6 15:44:42 2017 +0200 Removed our local copy of QtWebKit'\''s include and CMake files (#1306). commit db969e61c9b39a2b427f05c2581f93e371c60ed6 Author: Alan Garny Date: Tue Jun 6 15:43:59 2017 +0200 Some minor cleaning up. commit 1e8ef3d1d089573fff7cf0624df9fde75c4470fb Author: Alan Garny Date: Tue Jun 6 13:50:43 2017 +0200 LLVMClang package: new Linux binary (#1306). commit 8bbd91a0b67aae9fe883fa6d316e66e2a07a244b Author: Alan Garny Date: Tue Jun 6 12:32:55 2017 +0200 QtWebKit package: started updating our README.rst file (#1306). commit 91c071cdf68588ec0944838333c2351f0e796a89 Author: Alan Garny Date: Tue Jun 6 11:54:58 2017 +0200 Qwt package: added a small README.rst file (#1306). commit d6cd963295c59143b4f0b4d755717064cfd5ff25 Author: Alan Garny Date: Tue Jun 6 11:27:09 2017 +0200 Back to building our LLVMClang package (#1306). commit fd0ec3aed4ba5a6634122ee7f9aaaa4db16f9eb7 Author: Alan Garny Date: Tue Jun 6 11:26:26 2017 +0200 QScintilla and Qwt packages: generated new binaries (#1306). commit dbd71fe3ea9c25a453a8d972ddc4032352c6c2c8 Author: Alan Garny Date: Tue Jun 6 10:55:30 2017 +0200 Need to rebuild our QScintilla and Qwt packages (#1306). This is because our pre-built versions rely on Qt 5.9 LTS while we decided to go back to Qt 5.6.2 LTS. commit 3f7bd398105a432b0bf71109d95bb923c708c652 Author: Alan Garny Date: Tue Jun 6 10:53:01 2017 +0200 LLVMClang package: new macOS binary (#1306). commit a980dcd0a124de2ed05017e90b0af5a8aff941f9 Author: Alan Garny Date: Tue Jun 6 10:34:00 2017 +0200 Back to building our LLVMClang package (#1306). commit 70c43c5d6f1c28fb9c0bc373ca4276c3a0c90502 Merge: f8a75ca6a 5ac1374bd Author: Alan Garny Date: Tue Jun 6 10:25:22 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 5ac1374bd74a641218a1a55c804f452ca4c40f1f Merge: 801a27c14 9987cbfac Author: Alan Garny Date: Tue Jun 6 10:20:46 2017 +0200 OpenSSL: upgraded to version 1.0.2l (closes #1318). commit 9987cbfac9464a1693668fd2cc13f184ed049cd4 Author: Alan Garny Date: Tue Jun 6 09:48:53 2017 +0200 Slight update to our downloads page (#1318). commit 8cc912a1e42ea5c01bfb7696177b7f8ad7efb7d9 Author: Alan Garny Date: Tue Jun 6 09:44:59 2017 +0200 OpenSSL package: generated 1.0.2l binaries (#1318). commit 79fdd3aa3996949baa944b3e7556ebd1a668d7c1 Author: Alan Garny Date: Tue Jun 6 09:16:20 2017 +0200 Getting ready to build version 1.0.2l of the OpenSSL package (#1318). commit c2dafa57db0f2d277ccce83533666c75f8b78a2f Author: Alan Garny Date: Tue Jun 6 09:00:44 2017 +0200 Slight update to our prerequisites page following the release of Xcode 8.3.3. commit f8a75ca6acf15e29374c53dbf7445b327da19e6a Merge: e6503092c 801a27c14 Author: Alan Garny Date: Mon Jun 5 23:31:18 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 801a27c1436eb8df3f7c58cc42360471ca1c9411 Merge: b1f8155e9 884db7c9b Author: Alan Garny Date: Mon Jun 5 23:13:53 2017 +0200 Some minor cleaning up. commit 884db7c9b65acc1d287e82c2fcc553cf46344147 Author: Alan Garny Date: Mon Jun 5 22:21:07 2017 +0200 Some minor cleaning up. commit e6503092cd8c068fb7bb7d6733ca1af9d3222937 Author: Alan Garny Date: Mon Jun 5 22:19:09 2017 +0200 Merge branch '\''master'\'' into issue1306. commit b1f8155e9ae2b2e723bd2389c2d11c60dfccef38 Merge: ab2e2be87 9f79705d1 Author: Alan Garny Date: Mon Jun 5 21:57:57 2017 +0200 Various cleaning ups. commit 9f79705d169bf1ba08c90855085cc1da590fc3c5 Author: Alan Garny Date: Mon Jun 5 21:03:25 2017 +0200 CMake: merged our former INITIALISE_PROJECT() macro into our main CMakeLists.txt file. commit dacce39c7d8e87a7e88e44f8ff1cdccd2bb88a4b Author: Alan Garny Date: Mon Jun 5 20:56:00 2017 +0200 Removed various constructor() methods. Fixed a small problem following commit 6642776. commit b2a2cd099e5f24a50f35c3ea67f00b693b3b461c Author: Alan Garny Date: Mon Jun 5 19:37:08 2017 +0200 Make sure that our packages get build using our OpenCOR release mode. commit b814c4a283fde3ceae88970964b3adbc6503bb1c Author: Alan Garny Date: Mon Jun 5 19:36:12 2017 +0200 Some minor cleaning up. commit e093d933e1da7c8623fad86c1d2197d1a5868669 Author: Alan Garny Date: Mon Jun 5 18:48:06 2017 +0200 OAuth package: rely on a special release tag (#1306). commit b43d9df9bb9b6cdcba75f30938891476f2472e61 Author: Alan Garny Date: Mon Jun 5 18:28:52 2017 +0200 Getting ready to check that our OAuth package binaries are fine (#1306). commit 3ed086a0c374a8be223181a285a961342ca353c9 Author: Alan Garny Date: Mon Jun 5 18:28:00 2017 +0200 OAuth package: new binaries (#1306). commit d223235cd4a38e948153b4f35037bbeae0eaf7e7 Author: Alan Garny Date: Mon Jun 5 18:02:18 2017 +0200 Getting ready to build our OAuth package (#1306). commit 04b690ad231ffbfc01844603952aa15bf0fcb17a Merge: 3954c7977 ab2e2be87 Author: Alan Garny Date: Mon Jun 5 15:09:58 2017 +0200 Merge branch '\''master'\'' into issue1306. commit ab2e2be871fc52269dd0a4af08f5bef0a89ad4dd Merge: f22bc1e53 1363bdda5 Author: Alan Garny Date: Mon Jun 5 15:05:36 2017 +0200 Reverted to Qt 5.6.2 LTS. commit 1363bdda5eecbd6bc30b8a2844d91bee5b534d42 Author: Alan Garny Date: Mon Jun 5 14:00:28 2017 +0200 Updated our prerequisites and downloads pages. commit 3954c7977a01174ac4d6d6c14bd708fef815f8bf Merge: d11cef46f f22bc1e53 Author: Alan Garny Date: Sun Jun 4 16:30:24 2017 +0200 Merge branch '\''master'\'' into issue1306. commit f22bc1e53ac59f21aabb2f9f7079016192cb3906 Merge: e9d9803b1 66427767f Author: Alan Garny Date: Sun Jun 4 16:27:38 2017 +0200 Removed various constructor() methods. commit 66427767f4c39794652f578181655f2efbca4cd8 Author: Alan Garny Date: Sun Jun 4 15:53:08 2017 +0200 Removed various constructor() methods. commit d11cef46f2a00b023aa4ba9da6a735278ab9e0a7 Author: Alan Garny Date: Fri Jun 2 21:51:51 2017 +0200 Rebuilt the QScintilla and Qwt packages (#1306). commit 494f3b53dfd034f5f73ca158ae53b5a06411051c Author: Alan Garny Date: Fri Jun 2 19:58:15 2017 +0200 Getting ready to rebuild our Qt-based packages (#1306) commit 478acd5067c75c600d2d4a051eb453a60fd8bf92 Merge: 31bd95287 0e1956c5c Author: Alan Garny Date: Fri Jun 2 19:36:52 2017 +0200 Qt 5.9 LTS: remove our dependency on Lucene (which is not needed anymore) (#1311). commit 0e1956c5c3914439ffd95fef32e6f4dd68870f13 Author: Alan Garny Date: Fri Jun 2 13:35:15 2017 +0200 Qt 5.9 LTS: remove our dependency on Lucene (which is not needed anymore) (#1311). commit a625ab7a2f05bc7c9352ae7e1605eff3e1c7bfb1 Author: David Brooks Date: Fri Jun 2 11:48:03 2017 +1200 PythonWrapper plugin has to have a CMake dependency on PythonPackages plugin (#1310). commit 39aadd13474fdbe96382bb8d0ffedd403792453d Author: David Brooks Date: Fri Jun 2 11:46:44 2017 +1200 New Python binaries with runtime library sources bundled (#1310). commit 125d3c9078bcf413c502d069a2db2e1c66a1d1ed Author: David Brooks Date: Fri Jun 2 11:42:50 2017 +1200 New PythonQt binaries for Qt 5.9 (#1311). commit 232cbfa14244bb20d0cc54d553c1a9c148c190ad Merge: e43928922 e9d9803b1 Author: David Brooks Date: Fri Jun 2 10:39:57 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 31bd952876499bc3221b1ed35c3219b466a2e66b Merge: 3b5b74ffe e9d9803b1 Author: Alan Garny Date: Thu Jun 1 21:01:00 2017 +0200 Merge branch '\''master'\'' into issue1306. commit e9d9803b1f41b0395692a6d88821c911f4f8aecd Merge: a488148fc c0fceed73 Author: Alan Garny Date: Thu Jun 1 20:44:35 2017 +0200 Qt: upgrade to Qt 5.9 LTS (closes #1311). commit c0fceed7374c18a34378a57d216e510ba59a3460 Author: Alan Garny Date: Thu Jun 1 18:57:01 2017 +0200 Qt 5.9 LTS: slight update to our downloads page (#1311). commit 40e1e9fc7ba3f014e54c98a85940d1cfb43063ff Author: Alan Garny Date: Thu Jun 1 18:56:47 2017 +0200 Qt 5.9 LTS: updated our supported platforms (#1311). commit 73be7a31ef1652bbf34636f39977e3310ebd96a5 Author: Alan Garny Date: Thu Jun 1 18:52:26 2017 +0200 Oops, forgot to remove a '\''test'\'' (#1311). commit bdaa113d1c07e4aaad6a133f29a967876e552018 Author: Alan Garny Date: Thu Jun 1 18:51:48 2017 +0200 Qt 5.9 LTS: replaced calls to QModelIndex::child() (which is now obsolete) with calls to QAbstractItemModel::index() (#1311). commit b7024e3127f3c20de116829b85613f9569799bba Author: Alan Garny Date: Thu Jun 1 18:33:40 2017 +0200 Qt 5.9 LTS: replaced instances of QString::null with QString() in Qwt (#1311). commit 9a8312e46427bf79368d80c77877f75a530d69fb Author: Alan Garny Date: Thu Jun 1 18:08:51 2017 +0200 Qt 5.9 LTS: support OS X 10.10 and later (#1311). commit dd658eab5ff81881b8996e1dac3c16701715d064 Author: Alan Garny Date: Thu Jun 1 18:05:10 2017 +0200 Slight update to the developer documentation (#1311). commit 3b5b74ffe28f230176990b238e1d7edb9d3fd44d Author: Alan Garny Date: Thu Jun 1 17:30:13 2017 +0200 LLVMClang package: make sure that we can build on Windows (#1306). commit 940f0882f5042fae78b241f4cb384f934f4d472b Author: Alan Garny Date: Thu Jun 1 13:30:53 2017 +0200 LLVMClang package: added (temporary?) binaries for macOS (#1306). commit e43928922d2cc68bbf62f676ccac602ad7e2fd55 Author: David Brooks Date: Thu Jun 1 13:07:33 2017 +1200 Tweaks and new binaries for PythonQt (#1306). commit edcc8a100de0dc77bf47a5eff0dc7133b536ad4e Author: Alan Garny Date: Wed May 31 15:44:48 2017 +0200 Packages: build our packages using the same CMake generator as the one used for OpenCOR (#1306). Argh, I did it the wrong way in commit 03ce7a2. commit e79c01b9126d7f286ec716de81d7b90c76d6eead Author: Alan Garny Date: Wed May 31 15:17:59 2017 +0200 Some minor cleaning up. commit 03ce7a23e7b65fa408e3eb800a9b4af9418f2576 Author: Alan Garny Date: Wed May 31 14:29:27 2017 +0200 Packages: build our packages using the same CMake generator as the one used for OpenCOR (#1306). commit b9e4b136ae60cae132b2f4df93c697e3c87da101 Author: Alan Garny Date: Wed May 31 13:13:19 2017 +0200 LLVMClang package: don'\''t disable CLANG_PLUGIN_SUPPORT anymore (it'\''s not used on Linux, at least) (#1306). commit d587adb59148090951aa71be2f7aa80e6a6d367b Author: Alan Garny Date: Wed May 31 12:51:47 2017 +0200 LLVMClang package: can now build on macOS (#1306). commit dd3419c0ee92d3e6594664830af7abfc86f6ea06 Author: Alan Garny Date: Tue May 30 10:47:41 2017 +0200 OpenSSL package: update SHA-1 values (#1306). commit ec649422f15efa28996b906dab8538b670690617 Author: Alan Garny Date: Mon May 29 19:52:49 2017 +0200 Slight update to our developer documentation. commit 686147be05b14725db2ba1a8c655e2b291b7d8a4 Author: Alan Garny Date: Mon May 29 19:48:09 2017 +0200 Slight improvement to our cleaning scripts. commit 85218637e142321000627ade3974f8afb358d387 Author: Alan Garny Date: Mon May 29 19:41:22 2017 +0200 Slight improvement to our cleaning scripts. commit ea8037e1dc2fe0ba5876dce563e1d5723ebaf399 Author: Alan Garny Date: Mon May 29 19:27:50 2017 +0200 LLVM package: how our CMakeLists.txt file should look like (#1306). However, for this to work, we will need to patch our copy of LLVM+Clang so that we can generate proper shared libraries for both LLVM and Clang. Indeed, on macOS, for example, we can generate a proper LLVM shared library out of the box, but not a proper Clang one (!?). commit 8749fdceeb9d9c171748ee2aae65521497389901 Author: Alan Garny Date: Mon May 29 19:23:37 2017 +0200 Packages: make sure that we build them for the OS X / macOS version we are after (#1306). commit c008e1d7437e23b55f162f7aafc80588390651f5 Merge: c20e63ee2 e1ac45a48 Author: Alan Garny Date: Mon May 29 10:59:37 2017 +0200 Merge branch '\''master'\'' into issue1306. commit e1ac45a487ee38b61fef78a4f5312c9b9887cb74 Author: Alan Garny Date: Mon May 29 10:55:06 2017 +0200 Some minor cleaning up [ci skip]. commit c20e63ee2f09fbb29af3024cc0dfe208db2de224 Author: Alan Garny Date: Sun May 28 16:46:53 2017 +0200 Some minor cleaning up. commit 004faa705fa8fe1e732bab1f0b2b704872b0bf5c Author: Alan Garny Date: Sun May 28 16:45:18 2017 +0200 LLVM+Clang package: Linux binaries (#1306). commit f5a776c3b7e9fca9b965fb764dfa9e1bd218983a Author: Alan Garny Date: Sun May 28 15:31:24 2017 +0200 LLVM+Clang package: some minor cleaning up (#1306). commit 795d272a357b46743652f96a0f59cebccd05952c Author: Alan Garny Date: Sun May 28 15:11:27 2017 +0200 Some minor cleaning up. commit b22b1004f2c0cf1d54f82b789769aa7d9919462b Author: Alan Garny Date: Sun May 28 15:07:55 2017 +0200 LLVM+Clang package: new binaries on macOS (#1306). commit d1ea4ddbae1d24293b33b9d17e09a5b00d7f29d9 Author: Alan Garny Date: Sun May 28 15:07:21 2017 +0200 Renamed our LLVM plugin to LLVMClang to avoid filename conflicts (#1306). Indeed, on macOS (at least), the shared library of our LLVM plugin was libLLVM.dylib, which was also the name of our LLVM package… commit 6e442403f56a8e244f06c4f8ece505db3175923d Author: Alan Garny Date: Sun May 28 11:32:46 2017 +0200 LLVM package: now have binaries for Linux and macOS (#1306). commit 4f7be211fc7a18250c867ca2a1294b2e4ec1b130 Author: Alan Garny Date: Sun May 28 10:58:13 2017 +0200 LLVM package: two binaries are actually being built, one for LLVM itself and another for Clang (#1306). commit 48994f471dd267ad71bb863a59c0d054893bd714 Author: Alan Garny Date: Sun May 28 10:49:52 2017 +0200 OpenSSL package: oops, forgot to remove the INCLUDE_DIRS option in our call to our '\''new'\'' ADD_PLUGIN() macro (#1306). commit ac7c1c5ff28a134d9474c85c2ba14b46177dea5d Author: Alan Garny Date: Sun May 28 09:17:53 2017 +0200 Slight update to our developer documentation. commit 345b44e31e8db1fe5dc3f290b76cda1ecd8561b6 Author: Alan Garny Date: Sun May 28 09:14:27 2017 +0200 General: have our cleaning script clean everything only when explicitly requested. commit fbf651715f6f14c018c024992f91f64055eddf24 Author: Alan Garny Date: Sun May 28 08:56:04 2017 +0200 LLVM package: removed our llvmglobal.h file and made sure that our Compiler plugin properly refers to LLVM (#1306). commit 861b1b91e6fdc8f10eeaa34f4e387fd359e33230 Author: Alan Garny Date: Sun May 28 08:27:17 2017 +0200 LLVM package: can now build LLVM on macOS (#1306). commit 52a495a41de1e26a9d5fa992d9b82629ecf7d5da Author: Alan Garny Date: Sun May 28 00:25:02 2017 +0200 Some minor cleaning up. commit 222911b5e3bef4f35448aff2eddedbec7179a116 Author: Alan Garny Date: Sat May 27 23:42:53 2017 +0200 Getting ready to test LLVM once again (#1306). commit 051940a8884446eb39a185b1978673c935e8bf0e Author: Alan Garny Date: Sat May 27 23:37:29 2017 +0200 Zinc package: binaries for Windows, Linux and macOS (#1306). commit 54b55f9de55cbd067658c77b9d1d2dbd8203e381 Author: Alan Garny Date: Sat May 27 20:04:02 2017 +0200 Zinc package: finally found the right settings for building Zinc on Windows (#1306). commit b469231afc1c22d338650a4f9516635d9db11dde Merge: f11a8c97b a488148fc Author: Alan Garny Date: Sat May 27 14:07:32 2017 +0200 Merge branch '\''master'\'' into issue1306. commit a488148fcb03b6c9aa72a3819328dfa001ed2fe6 Merge: 029080416 403cc05a0 Author: Alan Garny Date: Sat May 27 11:47:36 2017 +0200 General: make it possible to open remote binary files (closes #1319). commit 403cc05a0b48cce7de55a5b9a57ab7b2eb97f254 Author: Alan Garny Date: Sat May 27 11:04:52 2017 +0200 OpenSSL package: update the SHA-1 values of some binaries. commit c0527f0182f001cd1a24f30dc3422da34247541c Author: Alan Garny Date: Sat May 27 10:19:15 2017 +0200 Slight update to our downloads page (#1319). commit 92b1b91c8085382d77b44e90f7ed3f3ad68b177f Author: Alan Garny Date: Sat May 27 10:06:14 2017 +0200 Can now load (and run) a remote COMBINE archive (#1319). commit a2e83c90454a0fa8b3a473448679622e1f497cdf Author: Alan Garny Date: Sat May 27 09:30:22 2017 +0200 Allow binary files to be created/loaded (especially remotely when it comes to loading) (#1319). commit 48be8d107e2ad06920346d0e430c429649306ce5 Author: Alan Garny Date: Sat May 27 09:26:35 2017 +0200 Some minor cleaning up. commit f11a8c97b6dc9ae2126b8c51cd1ce8d96b1fe98d Author: Alan Garny Date: Sat May 27 08:39:35 2017 +0200 Zinc package: some minor cleaning up (#1306). commit db64f7f7e6c302c7955f190c2544e91f7147493b Author: Alan Garny Date: Sat May 27 08:06:45 2017 +0200 Zin package: make sure that we are really building for 64-bit Windows (#1306). commit 029080416d2da80c855a1647fa4aeb370e740865 Author: Alan Garny Date: Fri May 26 23:36:44 2017 +0200 OpenSSL package: updated our macOS SHA-1 values [ci skip]. commit a5cccf205c470664d6c67007fb9118bf21bde586 Author: Alan Garny Date: Fri May 26 23:36:43 2017 +0200 OpenSSL package: updated our macOS SHA-1 values (#1306). commit 6b4daefc5e0729389afbb7b2c0189a1efc41b9ad Author: Alan Garny Date: Fri May 26 21:27:28 2017 +0200 Clean batch/shell script: now clean or remove our different ext folders. commit cf3e8b17534d29ac359dc03f5a9aca0b8b87d617 Author: David Brooks Date: Fri May 26 23:07:28 2017 +1200 Get `qmake` PythonQt build working on Linux (#1310). commit 03fef78d483338aed86d11ae65bb94ba738ee6de Author: Alan Garny Date: Fri May 26 08:55:16 2017 +0200 Some minor cleaning up. commit 1e37a2e64985b27fcaeca0bfc6249ade1ce94286 Author: Alan Garny Date: Thu May 25 22:56:53 2017 +0200 Some minor cleaning up. commit e486ac169485b2bc5b8b6769a31001ab17b4d75a Author: Alan Garny Date: Thu May 25 22:45:32 2017 +0200 Some minor cleaning up. commit d4489cb26705d6c802ee74b028225aebd5e8c8d9 Author: Alan Garny Date: Thu May 25 22:18:19 2017 +0200 Zinc package: make sure that we generate 64-bit binaries on Windows (#1306). commit 1a4a243e781746b8f086a9acb5cbe7afb861826b Author: Alan Garny Date: Thu May 25 21:41:07 2017 +0200 Some minor cleaning up. commit a3f00f1ee9d5dc21327201fb7486318ddea58ebc Author: Alan Garny Date: Thu May 25 21:14:13 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows (#1306). commit 618b81350fd1cd30556df3a08bc3f735964459a3 Author: Alan Garny Date: Thu May 25 20:37:41 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows (#1306). commit 17dcb0093fadf2531311d40dceb584e245190ada Author: Alan Garny Date: Thu May 25 20:26:34 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows (#1306). commit 91b53abba1e06d40e4273903914f1a00a5e91ea5 Author: Alan Garny Date: Thu May 25 20:07:38 2017 +0200 Zinc package: the name of the debug version on Windows at least (#1306). commit 5106f41034e1196fa9995695e27012a59fe01183 Author: Alan Garny Date: Thu May 25 19:58:35 2017 +0200 Zinc package: the build type is to be specified using OPENCMISS_CONFIG_BUILD_TYPE rather than CMAKE_BUILD_TYPE (#1306). commit 14d2820a272c7056d7b0db96eacc23ce1fdd1f3c Author: Alan Garny Date: Thu May 25 17:08:46 2017 +0200 Oops, forgot to update something in the Zinc plugin'\''s CMakeLists.txt file (see commit 7830ca6; #1306). commit 7830ca6211547fd79a6fc0eee4e707efd5c738a6 Author: Alan Garny Date: Thu May 25 16:18:25 2017 +0200 Move the source code of external packages to [OpenCOR]/ext (#1306). Indeed, Zinc builds ‘in source’ and although it builds fine on Linux and macOS, it eventually fails on Windows due to file paths being too long. So, we move external package files as high up our OpenCOR file structure as possible. commit 18422c6911d6979489e54b761446fb79d19acd5e Author: Alan Garny Date: Thu May 25 15:48:11 2017 +0200 Some minor cleaning up. commit fb40b5770a5fbdce1d56dd1b3ffc74ecf45128fe Author: Alan Garny Date: Thu May 25 15:34:44 2017 +0200 Back to building the Zinc package only (#1306). commit 8aad69c63b3a7998fb2fcd48eeb521742eef1c47 Author: Alan Garny Date: Wed May 24 23:52:15 2017 +0200 CMake: need to look for the Gui module before we can look for the WebKit one. commit bb5daff297bda897c7b198e0c9732ea1745aa748 Author: Alan Garny Date: Wed May 24 20:18:43 2017 +0200 CMake: make sure that QtWebKit is retrieved before looking for it locally (!!). commit f98ff0ad52e6a329104ffd2ccba3cd9b0b890a02 Author: Alan Garny Date: Wed May 24 19:30:13 2017 +0200 LLVM package: specify some options (#1306). commit 72fc66c77c8ccb074dd07ed25f8139f6ba7c99cd Author: Alan Garny Date: Wed May 24 19:12:35 2017 +0200 LLVM package: specify some options (#1306). Note: we disabled quite a few things here, so some of those options may end up being reenabled. commit ebfe2e8d1c166ad8dba148b15f4c2432924015b8 Author: Alan Garny Date: Wed May 24 19:01:24 2017 +0200 Some minor cleaning up. commit a5b28d61e2804ae446d97364da82a62f407090d9 Author: Alan Garny Date: Wed May 24 18:48:25 2017 +0200 Some work on the LLVM package (#1306). - Replaced USE_PREBUILT_LLVM_PLUGIN with USE_PREBUILT_LLVM_PACKAGE; - Re-enabled LLVM-related plugins; - Only build the LLVM plugin for now; and - Initial CMake file for our ‘new’ LLVM plugin. commit 4ad6d636178b2fc970e223df3824e92d60d6440b Author: Alan Garny Date: Wed May 24 18:38:05 2017 +0200 LLVM package: removed our local copy of LLVM+Clang, and our associated README.rst file (#1306). commit 35150d316df89589a48de88c9bf7588f68bcbbb9 Author: Alan Garny Date: Wed May 24 16:51:42 2017 +0200 Some minor cleaning up. commit 75a89487937eee4d6cdafe79d37cec87859047ed Author: Alan Garny Date: Wed May 24 16:51:14 2017 +0200 CMake: we actually need to set CMAKE_INCLUDE_CURRENT_DIR to ON (#1306). commit f195b1f3328466337b5dfc6528ad1693655628cb Author: Alan Garny Date: Wed May 24 16:45:48 2017 +0200 CMake: oops, was trying to use a not-yet-defined variable (#1306). commit 42681a633cccc243b108d33c982a8e871dadb719 Author: Alan Garny Date: Wed May 24 16:37:18 2017 +0200 Some minor cleaning up. commit 694dcdd724999e2c8b13a658643141df4216fe9c Author: Alan Garny Date: Wed May 24 16:35:32 2017 +0200 Zinc package: generated Linux and macOS binaries (#1306). commit 692b65589dccbadb7360bbf2519e85d163623578 Author: Alan Garny Date: Wed May 24 16:34:08 2017 +0200 CMake: removed some macros that are not being used anymore or soon not to be used anymore (#1306). commit 17d1db827246069a2c25287f7b05d79d4ccb2a01 Author: Alan Garny Date: Wed May 24 16:30:51 2017 +0200 CMake: moved the contents of our INITIALISE_PROJECT() macro to our main CMakeLists.txt file (#1306). This is something that we should probably have done long ago, but now is the time (as I am waiting for Zinc to build…). commit 3160b9a86d650ee415d602eaa1822bc3a17c7ed7 Author: Alan Garny Date: Wed May 24 16:04:27 2017 +0200 Removed our ADD_PLUGIN_BINARY() macro since it'\''s soon not to be used anymore (#1306). commit 3893b22672bcf981505f1d8c80e23c9a07b27aa4 Author: Alan Garny Date: Wed May 24 15:28:40 2017 +0200 Zinc library: on Windows, we get told a problem with the Fortran compiler (!), so now trying to build Zinc the '\''recommended'\'' way (#1306). commit cbfceb3db94b40975e34ef590c99e58a6996cef6 Author: Alan Garny Date: Wed May 24 14:36:50 2017 +0200 Zinc package: can now build on macOS (#1306). commit 873baa1adac77a3e9c75dfa2dbbd5c9560feb6a6 Author: Alan Garny Date: Wed May 24 13:28:16 2017 +0200 Some minor cleaning up. commit ddb4be62c87916087c7587bfd251ab914b472424 Author: Alan Garny Date: Wed May 24 13:07:54 2017 +0200 Slight update to our prerequisites page. commit 018eed293259291973dd28a5ee9b716b4bd3af7d Author: Alan Garny Date: Wed May 24 11:43:25 2017 +0200 Zinc package: first go at building it (#1306). commit b3aa7a1650b91b1a452721b882dfd3065d63944a Author: Alan Garny Date: Wed May 24 11:39:42 2017 +0200 zlib package: some minor cleaning up (#1306). commit 75ef7d3e40525dfbcf12b5c1f3ecb4f71565e25d Author: Alan Garny Date: Wed May 24 10:40:41 2017 +0200 Zinc package (#1306). - Added the USE_PREBUILT_ZINC_PACKAGE option. - Re-enabled building Zinc-related plugins. - Removed the Zinc-related README.rst file. - Removed our local copy of the Zinc include files. commit 17b5808ab4dd04f4ae1414d9d09fdcbad963aa8c Author: Alan Garny Date: Wed May 24 10:32:31 2017 +0200 Removed our [OpenCOR]/src/plugins/thirdParty/README.rst file. commit 04a8d4054eb79f33fe64a9dda5be4226605c637a Author: Alan Garny Date: Tue May 23 20:20:39 2017 +0200 Some minor cleaning up. commit bb9f5c4f236911bb64b8e6b9c808b1f8e580168c Merge: 627db362c 43d8efd8c Author: Alan Garny Date: Tue May 23 20:19:00 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 43d8efd8cc73e1662a1ccedbce4e44efd8f75481 Merge: d0c43228f fab1e28fd Author: Alan Garny Date: Tue May 23 20:16:06 2017 +0200 Some cleaning up. commit 627db362cf37df4011f2100e1eca98ceecca3b9e Author: Alan Garny Date: Tue May 23 20:13:40 2017 +0200 CMake: no need to specify anymore that a plugin is a third-party plugin (#1306). commit 8236180d75444a9b76b4e681abfe6dbf036b2da1 Author: Alan Garny Date: Tue May 23 20:10:34 2017 +0200 CMake: plugins can now be listed in any order (dependencies are determined automatically). commit 2655a37e3d2f3f3942994ca8f13653ef15803757 Author: Alan Garny Date: Tue May 23 19:25:58 2017 +0200 Some minor cleaning up. commit fab1e28fdfba22a75954d938379c2e77561a2d05 Author: Alan Garny Date: Tue May 23 19:14:58 2017 +0200 Some minor cleaning up. commit 2090c5bf4864e3d46c7da3aa2d5807a68465893b Author: Alan Garny Date: Tue May 23 19:14:21 2017 +0200 Updated the binaries of our OpenSSL and zlib packages (on Windows). commit 9163f3856cab0b9b6ff6e8c781384440823d519f Author: Alan Garny Date: Tue May 23 19:11:26 2017 +0200 Some minor cleaning up. commit 9c694b7e39aea78b04bd6148b772219fa86abcd2 Author: Alan Garny Date: Tue May 23 18:50:07 2017 +0200 Updated the Windows binaries for the OpenSSL, QScintilla, Qwt, SUNDIALS and zlib packages (#1306). commit c3d3d1f02b84ded94e116d384fca0dd0425b34eb Author: Alan Garny Date: Tue May 23 17:53:31 2017 +0200 Updated the Windows binaries for the libgit2, LibXDiff and o2 packages (#1306). commit 3be4e6c515c7bb2d689d16c7020dcce8b5c8ddd2 Author: Alan Garny Date: Tue May 23 17:40:53 2017 +0200 Updated the Windows binaries for CellML API, libCellML and libSEDML packages (#1306). commit 6ab5c04796d92a3cdf85c68abdc0fecb7e40514a Author: Alan Garny Date: Tue May 23 17:13:11 2017 +0200 Some minor cleaning up. commit a4d7fed7e17e8d3678c701e1db0f05066addaf57 Author: Alan Garny Date: Tue May 23 15:51:34 2017 +0200 Some minor cleaning up. commit c32e4321582685bb1c46b176d65c4415cf7b1e73 Author: Alan Garny Date: Tue May 23 14:55:51 2017 +0200 Some minor cleaning up. commit ea767de7e59e8f70b537f9af01d96b36455c72a2 Author: Alan Garny Date: Tue May 23 14:52:10 2017 +0200 Updated the binaries of our OpenSSL and zlib packages. commit c56ba8067aeb72cbf88120196d3dec010e511918 Author: Alan Garny Date: Tue May 23 14:50:56 2017 +0200 Some minor cleaning up. commit b3726f375d505bfde40002a81cc73e3dfeddc89c Author: Alan Garny Date: Tue May 23 14:08:20 2017 +0200 Some minor cleaning up. commit 254e588d4e2017c37b9bd7217083d8555e8b5267 Author: Alan Garny Date: Tue May 23 13:59:22 2017 +0200 libSEDML package: we need the libSBML package to be built first (#1306). commit 175c450c14ef494da0d53fafa4c8b95659f0c28c Author: Alan Garny Date: Tue May 23 13:46:11 2017 +0200 Updated our Linux and macOS packages (#1306). To take advantage of them being stripped (on Linux) and to account for the renaming of SBMLAPI to libSBML and SEDMLAPI to libSEDML. commit 25cebba63ea5de849ba54e7e27629672b2fc9ac5 Author: David Brooks Date: Tue May 23 21:33:53 2017 +1200 Work on an interface for wrapping classes to use with Python (#1275). commit 416cb78a71eec353fd8843b36c924334a56a2601 Author: Alan Garny Date: Tue May 23 11:10:01 2017 +0200 Mesa package: make sure that our library gets copied when it has actually been built (#1306). commit dbb3f92de5cd5525aefee848cc887af3f34051f6 Author: Alan Garny Date: Tue May 23 11:02:42 2017 +0200 Some minor cleaning up. commit 3d8f3271bd012b4303923dea19ab2f913436e64e Author: Alan Garny Date: Tue May 23 09:45:11 2017 +0200 Changed the name of our libSBML and libSEDML packages (#1306). commit 0e000afc099d7b271d82d63c9b2ddf640c1cb54d Author: Alan Garny Date: Tue May 23 09:40:02 2017 +0200 Rebuilt our packages on macOS (#1306). … and thus taking advantage of the stripping of our binaries. At least, for some packages. commit 280cc5251cc707ace0d984f6730b645eb21197e5 Author: Alan Garny Date: Tue May 23 08:56:04 2017 +0200 Getting ready to rebuild our packages on Linux and macOS (#1306). commit 6aadded69667d0c1194c29f889fade459b7b669b Author: Alan Garny Date: Mon May 22 20:21:54 2017 +0200 More generic .gitignore file. commit 28919fbcef61dc16295d3642bbb20014158c96e4 Author: Alan Garny Date: Mon May 22 20:07:49 2017 +0200 Moved our Mesa package folder (#1306). This was causing a problem to have it under `[OpenCOR]/distrib/linux/mesa` since our RETRIEVE_PACKAGE_FILE() macro replace `linux` with `ext`… commit 2682d2f31555f6c8c16f259753c245f185bec87a Author: Alan Garny Date: Mon May 22 19:47:19 2017 +0200 Some minor cleaning up. commit 42222bd6293549015ab22a95cfb7bf5e880a5d01 Author: Alan Garny Date: Mon May 22 19:36:12 2017 +0200 Some minor cleaning up. commit dd8ae7229f3ca4a36c0e7d069984041a7d719461 Author: Alan Garny Date: Mon May 22 19:35:49 2017 +0200 Mesa package: generate the binary on Linux (#1306). commit 98d81b7dfd32fc62ea5b2e8053ccb832e1449fd9 Author: Alan Garny Date: Mon May 22 19:29:28 2017 +0200 Packages: make sure that files get stripped, if needed (#1306). commit cdc2ce52c850a7bb3b3432189eabfac189fb5f19 Author: Alan Garny Date: Mon May 22 19:11:32 2017 +0200 Update our main .gitignore file. commit feb6b704fb88caf2a83a8df5457198a0a329e041 Author: Alan Garny Date: Mon May 22 18:40:26 2017 +0200 Mesa package: can now generate the package on Linux (#1306). commit bdaa97657dadee65584544c1b08ae1c8352d790d Author: Alan Garny Date: Mon May 22 16:40:08 2017 +0200 Some minor cleaning up. commit 8dddee1b1190fd4749b7338b664ec01072a191c3 Author: Alan Garny Date: Mon May 22 16:35:34 2017 +0200 Some minor cleaning up. commit 1c24fd9ebd36f229c83642a5806f708cc16a5cd2 Author: Alan Garny Date: Mon May 22 16:27:59 2017 +0200 Some minor cleaning up. commit 47f6aae729d5624397a1b2a5bc4f605aef67d1d6 Author: Alan Garny Date: Mon May 22 16:15:52 2017 +0200 Some minor cleaning up. commit 82638723a4bc5079baa98cd40dcc4d7d974101bb Author: Alan Garny Date: Mon May 22 15:48:27 2017 +0200 SED-ML API package: oops, actually need to specify a specific release tag (#1306). commit 5b3f67564be04f20200ca218ecd6a44f1ec63b59 Author: Alan Garny Date: Mon May 22 15:44:23 2017 +0200 Some minor cleaning up. commit cf4580e6b612b63209e46c11e915af8ebc3de820 Author: Alan Garny Date: Mon May 22 15:43:55 2017 +0200 SED-ML API package: generated binaries on Windows, Linux and macOS (#1306). commit d1ef6bcbbb485734a4218ba9d11c721256ccbdeb Author: Alan Garny Date: Mon May 22 15:37:45 2017 +0200 SED-ML API package: we need to define LIBZ_LIBRARY on Windows (#1306). commit 6d204ed75ed8531549f41fde67654a90f394e140 Author: Alan Garny Date: Mon May 22 15:36:59 2017 +0200 Let people know when we are downloading the libSBML dependencies (#1306). commit 52d0ea30a163c434475dfb4985f5505e6026b86a Author: Alan Garny Date: Mon May 22 15:16:36 2017 +0200 SED-ML API package: can now build on Windows and Linux (#1306). commit 0ffc873f226c48859a2e6030d328f78df5db3b4c Author: Alan Garny Date: Mon May 22 14:51:35 2017 +0200 SBML API package: missed the fact that the name of the package repository is different from that of our plugin (#1306). commit d6d4ac954b4e9ae4c4442b9ea101fec9ca1b8569 Author: Alan Garny Date: Mon May 22 14:14:25 2017 +0200 Some minor cleaning up. commit 3e009459a21970bff57b7b323ad348f3144a9c32 Author: Alan Garny Date: Mon May 22 14:13:09 2017 +0200 SED-ML API package: can now build on macOS (#1306). commit f444c1a79fbb37aced9e1ee00a8bab4bab273c37 Author: Alan Garny Date: Mon May 22 14:02:15 2017 +0200 Some minor cleaning up. commit 55e886aea2dd76ca556e5bb31f5a94b01c44feac Author: Alan Garny Date: Mon May 22 13:53:32 2017 +0200 SED-ML package: added the USE_PREBUILT_SEDMLAPI_PACKAGE option, and removed our local copy of the SED-ML header files, as well as our SED-ML-related readme file and .gitignore file (#1306). commit cd3670d019a102a912aa25ceba4b107f3108d0ef Author: Alan Garny Date: Mon May 22 13:53:02 2017 +0200 SED-ML package: added the USE_PREBUILT_SEDMLAPI_PACKAGE option, and removed our local copy of the SED-ML header files, as well as our SED-ML-related readme file and .gitignore file (#1306). commit 55b137d1d91b6141af0b3f9b1dff6661b989c64b Author: Alan Garny Date: Mon May 22 13:48:33 2017 +0200 SBML API package: generated binaries on Windows, Linux and macOS (#1306). commit bdcaaf742a9167e3feede2a2ce0ba067e86b5011 Author: Alan Garny Date: Mon May 22 13:17:33 2017 +0200 SBML API package: can now build on Windows (#1306). commit 551e650ee613eb9dbf7da37ec42696f80df65764 Author: Alan Garny Date: Mon May 22 11:00:00 2017 +0200 Some minor cleaning up. commit 74ba2931aa80fa6fe8a4c670d8d3826fe1279a31 Author: Alan Garny Date: Mon May 22 10:21:59 2017 +0200 SBML API package: fixed a small problem with passing options to the CMake build (#1306). This meant that our tests couldn’t be compiled since they expected the SBML API to be built with the C++ namepsace on. commit 8a0a0a2072f9dcc1c101d21d4dd99329bf5a10de Author: Alan Garny Date: Mon May 22 10:17:41 2017 +0200 SBML API package: make sure that our tests get build only when our SBML API binary has been built (#1306). Side note: the package now builds fine on Linux. commit 0104fefc6686a3685f9736e8ace66e2db883700e Author: Alan Garny Date: Mon May 22 10:07:08 2017 +0200 SBML API package: don'\''t need the .gitignore file anymore (#1306). commit 6a60b0c6d3735a804ad135099de449ec73385f2f Author: Alan Garny Date: Mon May 22 10:04:09 2017 +0200 SBML API package: can now build on macOS (#1306). commit 4fd7538c39a80f145184b936d22ded4a70dad022 Author: Alan Garny Date: Mon May 22 09:44:54 2017 +0200 SBML API package: get ready to build libSBML (#1306). commit 582e0e34533a5a3d20d89943a50b07d1f3436415 Author: Alan Garny Date: Mon May 22 09:43:39 2017 +0200 CellML API package: put back the tests (got deleted by mistake) (#1306). commit 50311b7168062b052a2775abefb4093281c7fda8 Author: Alan Garny Date: Mon May 22 09:42:46 2017 +0200 SBML API package: initial CMake file. commit 3a688b6b70c10814f63b5503d277a3eefc7c2d4a Author: Alan Garny Date: Mon May 22 09:13:18 2017 +0200 SBML package: added the USE_PREBUILT_SBMLAPI_PACKAGE option, and removed our local copy of the SBML header files, as well as our SBML-related readme file (#1306). commit 75570dd817490af131fc2d87032c4bc850229b57 Author: Alan Garny Date: Fri May 19 20:23:17 2017 +0200 Qwt package: generated binaries (#1306). commit 69fd8d7ccf2025db256c0bcf32e482dd54cb200b Author: Alan Garny Date: Fri May 19 19:52:32 2017 +0200 Revert "Make sure that nmake is indeed quiet (#1306)." This reverts commit 4e45906a6f80abd42b5b0b969a489536eba626b7. commit 4e45906a6f80abd42b5b0b969a489536eba626b7 Author: Alan Garny Date: Fri May 19 19:46:24 2017 +0200 Make sure that nmake is indeed quiet (#1306). commit c26e78834ea1c76bbd563869c75f1caa8c29d8d3 Author: Alan Garny Date: Fri May 19 18:45:30 2017 +0200 Qwt package: make it possible to build both the release and debug versions on Windows (#1306). commit 27fbe4e03c7a951bea850309f0e6d46c991b691a Author: Alan Garny Date: Fri May 19 18:44:05 2017 +0200 Qwt package: make sure that the QwtMathML library can find the Qwt library (#1306). commit 75b999f6914357b7e1afe105d143073444e0d111 Author: Alan Garny Date: Fri May 19 18:09:04 2017 +0200 Qwt package: some minor cleaning up (#1306). commit 2091cd693af1717661cef48d69fadb14ba83daab Author: Alan Garny Date: Fri May 19 17:16:07 2017 +0200 Qwt package: can now build on macOS (#1306). commit 4dddcb61bdbccb47e4e957721cac3159ffb8b2d7 Author: Alan Garny Date: Fri May 19 16:04:16 2017 +0200 Qwt package: deleted two files too many (#1306). commit e018b2c226b35174be3c9d556d55d76691156260 Author: Alan Garny Date: Fri May 19 15:46:59 2017 +0200 QScintilla package: generated new binaries (#1306). commit 6c74fe6965c5b26a11190c498011ae421d952e17 Author: Alan Garny Date: Fri May 19 14:15:47 2017 +0200 QScintilla package: build the package out of source and make sure that we dereference the symbolic link to the library on Linux and macOS (#1306). commit 2187ccc04f3d23bf6dee5283044f86b7a2be6b2e Author: Alan Garny Date: Fri May 19 11:48:50 2017 +0200 QScintilla package: fixed a typo issue (#1306). commit 647e492656d307e623be61f7434bc082ec230bb5 Author: Alan Garny Date: Fri May 19 11:41:26 2017 +0200 Slight update to our third-party libraries page (#1306). commit fc11ba50d012589ad619cd994a0a7891c0f18f12 Author: Alan Garny Date: Fri May 19 11:20:46 2017 +0200 Qwt package: removed our local copy (#1306). commit cf2fd616c7619bcdfa26c67213523abd99a726ac Author: Alan Garny Date: Fri May 19 10:58:12 2017 +0200 Qwt package: replaced `USE_PREBUILT_QWT_PLUGIN` with `USE_PREBUILT_QWT_PACKAGE` (#1306). commit 7ece62e6d7351110b11988a8d5d89eaa6d3bf2ab Author: Alan Garny Date: Fri May 19 10:57:39 2017 +0200 Some minor cleaning up. commit ecb352fa15f5742e523d3d14e274b51d6671e979 Merge: 99f2fea39 d0c43228f Author: Alan Garny Date: Fri May 19 10:41:15 2017 +0200 Merge branch '\''master'\'' into issue1306. commit d0c43228f95f72f4961c5a71655a7439221c848f Author: Alan Garny Date: Fri May 19 10:39:52 2017 +0200 Some minor cleaning up [ci skip]. commit 82f608daa546c6523f6579d7619db7192a7dcac0 Author: David Brooks Date: Fri May 19 20:37:32 2017 +1200 Fix typo (#1310). commit ba0fe143c6ef1896082c65187e2bff75083c9c8b Author: David Brooks Date: Fri May 19 20:35:30 2017 +1200 PythonQt repository is now `pythonqt` (#1306). commit 703e8e57db683cdab27e98c9bda472aca0bf56f3 Author: David Brooks Date: Fri May 19 20:34:19 2017 +1200 Use `opencor/python` for prebuilt packages and wheels (#1310). commit 925e609e633fb6ba79f9707c2c9ef8d2ca4328d6 Author: Alan Garny Date: Fri May 19 10:32:56 2017 +0200 Slight update to our downloads page (#1314). commit aee0ca31019a37bc36df5877079b3e63ba01fc2e Merge: d2d30adba 482e89e58 Author: Alan Garny Date: Fri May 19 10:29:43 2017 +0200 OpenSSL package: updated its binaries and CMake code (closes #1314). commit 482e89e58bed7847399e91dfa4fb0c372e82e301 Author: Alan Garny Date: Fri May 19 09:57:08 2017 +0200 zlib package: some minor cleaning up. commit afc70bdae4b8d5c7fb5f4f152edf62c41b61ba1c Author: Alan Garny Date: Fri May 19 09:53:43 2017 +0200 OpenSSL package: updated its binaries and CMake code (#1314). commit 3dd445215c6ca937def605cc95c814e0cec3b361 Author: Alan Garny Date: Fri May 19 09:53:18 2017 +0200 Revert the change to our main CMakeLists.txt file (see commit a301cba). commit a301cbaf7f13ed52ead5e1a6394dc0013e41be83 Author: Alan Garny Date: Fri May 19 09:51:50 2017 +0200 OpenSSL package: updated its binaries and CMake code (#1314). commit b9c0fa85f880b6d372f30ac123135d225c056d82 Author: Alan Garny Date: Fri May 19 09:50:43 2017 +0200 Some minor cleaning up. commit a8d3b0723cab2058844d64890a57d250282c4b1d Author: Alan Garny Date: Fri May 19 09:50:26 2017 +0200 OpenSSL package: updated our third-party libraries page (#1314). commit 9f029ba93598068a5ec6a43c4a35c291ede3fcba Author: Alan Garny Date: Fri May 19 09:49:44 2017 +0200 Added a reference to `ccache` in our prerequisites page. commit e890a9b3a7f5d99f3a3743229aa761bcabe4406f Author: Alan Garny Date: Fri May 19 09:30:20 2017 +0200 Some minor cleaning up. commit 2eac0d594ff38ef706c1ef939585044eea40f7f2 Author: David Brooks Date: Fri May 19 12:39:19 2017 +1200 Use `PACKAGE_NAME` in build scripts (#1306). commit e08835552be3ef7be1cce84310ae87e9c773ee63 Author: David Brooks Date: Fri May 19 12:38:33 2017 +1200 Python wrapper plugin uses Python packages plugin (#1310). commit ee39259d09bf903e072fd22cde09c711cf8ff92e Author: David Brooks Date: Fri May 19 12:16:55 2017 +1200 Rename `PythonLibrary` plugin back to `Python` (#1310). commit ac006f4a978724685d6c68eb6bbad436e219eb6e Author: David Brooks Date: Fri May 19 11:39:37 2017 +1200 Correctly reference PythonQt'\''s include files (#1310). commit ad9eaf474cd21bdb8fb955b50e079cb8c83a75c0 Author: David Brooks Date: Fri May 19 10:59:23 2017 +1200 Specify PACKAGE_REPOSITORY and RELEASE_TAG for PythonQtAPI (#1306). commit 821b60344375e754143ec3ba139950cdea3dae44 Author: David Brooks Date: Fri May 19 10:53:02 2017 +1200 RETRIEVE_PACKAGE_FILE(): optionally allow a package'\''s release tag and/or repository to be specified (#1306). commit c8c82c625bd94f34c9ce5b49f22e8aea5d9bb53b Author: David Brooks Date: Fri May 19 10:40:14 2017 +1200 Use PythonQt'\''s `qmake` based build (#1310). commit b06422b4f8dc48450a63739e91854fdf7e7decc7 Author: David Brooks Date: Fri May 19 09:03:39 2017 +1200 Update PythonQtAPI build script for new packaging mechanism (#1106). commit 99f2fea39fd494d384f7e33f10636a85d8de37b5 Author: Alan Garny Date: Thu May 18 19:12:16 2017 +0200 Some minor cleaning up. commit 1873ac96ce6ee69f5c93c0f660bc4110d10a33b6 Author: Alan Garny Date: Thu May 18 19:11:57 2017 +0200 OpenSSL package: generated new binaries (#1306). commit 0fdd48e2c70166ab6ce09f9d7b34e1024f507d74 Author: Alan Garny Date: Thu May 18 18:42:31 2017 +0200 OpenSSL package: make sure that we can build both a release and a debug version on Windows (#1306). commit 7034d0dcac070b6d26d679d08dc2978578b28d97 Author: Alan Garny Date: Thu May 18 17:49:14 2017 +0200 QScintilla package: generated binaries (#1306). commit bb9fd6d17365fec5de9c139cb9c87b66b257ea38 Author: Alan Garny Date: Thu May 18 17:36:49 2017 +0200 OpenSSL package: use the correct release tag (#1306). commit 831e3dff4ff8ad47e1a05772571b38078c818558 Author: Alan Garny Date: Thu May 18 17:36:02 2017 +0200 QScintilla package: make sure that we can generate both a release and a debug version on Windows (#1306). commit 619108969a61151fd08bb2b269f36845d4222289 Author: Alan Garny Date: Thu May 18 15:43:25 2017 +0200 Some minor cleaning up. commit 272eada6bd1bcfb7c62cb4ce91f3c44f7c587bf8 Author: Alan Garny Date: Thu May 18 15:43:08 2017 +0200 QScintilla package: generated binaries (#1306). commit c7ad9f81dcedb4f1a6a5abd22d2e11d9d03b84be Author: Alan Garny Date: Thu May 18 15:21:56 2017 +0200 QScintilla package: can now build it on Windows (#1306). commit 0f7159c628c1d69a8c00a52d5b0ed12794ddf883 Author: Alan Garny Date: Thu May 18 14:21:50 2017 +0200 QScintilla package: can now build it on macOS (#1306). commit 34fd9bb736ca5a9779288ca23d8c02109beb6b32 Author: David Brooks Date: Thu May 18 22:12:34 2017 +1200 Changed our license to GPL v3.0 (#1301). commit ee1cd24f37d2e73a2eb50ae6a401bcca4d364fa5 Author: David Brooks Date: Thu May 18 22:03:28 2017 +1200 Update patch utility for Python 3 when debugging. commit ad096d0570d44d7455f29cea547deb2968eaa464 Author: Alan Garny Date: Thu May 18 10:44:07 2017 +0200 Slight update to our third-party libraries page (#1306). commit ccd163f48ba6a694d4d54e9097ac8a6515625126 Author: Alan Garny Date: Thu May 18 09:08:17 2017 +0200 QScintilla package: removed our local copy of QScintilla (#1306). commit 44f9ed0b451fcf1f99f69dab1791999ba2c3898d Author: Alan Garny Date: Thu May 18 09:04:07 2017 +0200 Replaced `USE_PREBUILT_QSCINTILLA_PLUGIN` with `USE_PREBUILT_QSCINTILLA_PACKAGE` (#1306). commit ff1afc811ff5659991dce4c076b3cd7979de04a2 Author: Alan Garny Date: Thu May 18 09:03:18 2017 +0200 Some minor cleaning up. commit ef8ca51a477b17d31746c7ccc38d5e91da47ceec Author: David Brooks Date: Thu May 18 15:04:51 2017 +1200 Make sure Python executable can find libraries under OS/X (#1310). commit 9e35c970e9f388f8f7698cd3d25fd9d912ec8c68 Author: David Brooks Date: Thu May 18 15:03:27 2017 +1200 Tidy up code (#1310). commit d2637897660fb6cb6bde433c4046dac4f8b29692 Author: David Brooks Date: Thu May 18 15:02:03 2017 +1200 Work on packaging of Python site packages (#1310). commit c7b8cd9c981dc929dfc2ed6ba4b4001d3ba2283f Author: David Brooks Date: Thu May 18 14:49:07 2017 +1200 Revert commit dfbc536 as we use the SHA1_FILES to determine if a package needs downloading (#1310). commit a9d1292ba0ef7e25682124980dfd97ada587eb28 Author: Alan Garny Date: Wed May 17 18:46:15 2017 +0200 libgit2 package: ok, not quite sure what is going on here, but kind of reverting commit f908aca (#1306). commit e1c2adfc830848d157b28fecf87d67de1751efb9 Author: Alan Garny Date: Wed May 17 17:53:00 2017 +0200 Some minor cleaning up (#1306). commit 172198fea5fd4cd10ac3d8e8aaecfddb03473543 Author: Alan Garny Date: Wed May 17 17:32:18 2017 +0200 RETRIEVE_PACKAGE_FILE(): allow to specify the repository of a package (#1306). commit 745a773450a297419a7cd75335f89b7e2fe71ad6 Author: Alan Garny Date: Wed May 17 16:50:58 2017 +0200 Some minor cleaning up. commit 6d1a42ae776e7af377bf500a5cc52b5d3364b110 Author: Alan Garny Date: Wed May 17 16:37:25 2017 +0200 CellML API package: now have binaries for Windows, Linux and macOS (#1306). commit 70928654a2f148698dd98b1d26cb6cdc20f9badb Author: Alan Garny Date: Wed May 17 16:21:08 2017 +0200 Make sure that CREATE_PACKAGE_FILE() generates the proper call to RETRIEVE_PACKAGE_FILE() (#1306). commit edc90b3f1c28cb3b966f8a06a4ec547b7a193e5b Author: Alan Garny Date: Wed May 17 16:02:46 2017 +0200 Some minor cleaning up. commit ee6e721861cafbecbc8fbb56b11a633bd4cbafbd Author: Alan Garny Date: Wed May 17 15:50:05 2017 +0200 CellML API package: can now build it on Windows (#1306). commit 6e82f3f2dbb33a01626db77fc19b60c8e96d44a8 Author: Alan Garny Date: Wed May 17 14:35:43 2017 +0200 Some minor cleaning up. commit a6ec6ede1ea23f4d272d9a20dbe3072235f46732 Author: Alan Garny Date: Wed May 17 14:24:24 2017 +0200 CellML API package: can now build it on Linux (#1306). commit ce7be20a3a2da1f4ee5302cf54fa03ff4957e83e Author: Alan Garny Date: Wed May 17 14:15:54 2017 +0200 CellML API package: can now build it on Linux (#1306). commit cdb989b97f47a81ad0e038a66a02ea81ab51ffc7 Author: Alan Garny Date: Wed May 17 14:06:43 2017 +0200 CellML API package: can now build it on Linux (#1306). commit 57cfba5f0f96779250b1564a3014bf3f0a23354b Author: Alan Garny Date: Wed May 17 13:26:46 2017 +0200 CellML API package: can now build it on macOS (#1306). commit ad467c5e8456147544ae1cd4d4c39df2b722748b Author: Alan Garny Date: Wed May 17 10:24:06 2017 +0200 Some minor cleaning up. commit 026841aa5999a3f381ddabcabc1cd102febd0fae Author: Alan Garny Date: Wed May 17 10:20:02 2017 +0200 Some minor cleaning up. commit d81d19bb65c78a0d3ffbf7722e17612c33076d2a Author: Alan Garny Date: Wed May 17 09:24:09 2017 +0200 Removed our CellML API README.rst file (#1306). commit 3743100c05629e8eaea1525bdea5e0711c48a0ee Author: Alan Garny Date: Wed May 17 09:23:48 2017 +0200 Slight update to our third-party libraries page (#1306). commit 57790da21ebaedde6c4aa7fa7b2936ca6d4f2635 Author: Alan Garny Date: Wed May 17 09:23:09 2017 +0200 Removed our copy of (some of) the CellML API files (#1306). commit ce910ef6cfe1ba43af12296b246b0e5474d60cd7 Author: Alan Garny Date: Wed May 17 09:22:04 2017 +0200 Some minor cleaning up. commit fb6b4ccb45961d00fba64708e982c848df20d0ea Author: Alan Garny Date: Wed May 17 09:19:26 2017 +0200 RETRIEVE_PACKAGE_FILE(): allow to pass a release tag as an option (#1306). commit f908aca4063e8da1a47fb9ce07e71964c7cab106 Author: Alan Garny Date: Tue May 16 19:06:29 2017 +0200 libgit2 package: rely on the major version in the end (!?) (#1306). Not quite sure what happened here, but I am 99.9% certain that there used to be a time when the minor version rather than the major one was needed!? commit 234bc2e99189a7d536f215cd22733e733f6a7ab1 Author: Alan Garny Date: Tue May 16 18:40:21 2017 +0200 Some minor cleaning up. commit 3ada280768bce1ea0201f02f13a01727cb55992b Author: Alan Garny Date: Tue May 16 18:39:58 2017 +0200 SUNDIALS package: generated binaries on Windows, Linux and macOS (#1306). commit 47d829194d0854dc9ed932a0702664b8c77a6e0f Author: Alan Garny Date: Tue May 16 18:32:28 2017 +0200 SUNDIALS package: make sure that we can build on Windows (#1306). commit 420e4391ea20ac8fd65760c7a860fe5fb0fc5e3a Author: Alan Garny Date: Tue May 16 17:55:15 2017 +0200 Some minor cleaning up. commit e1f95e0b0d6535f6bf81eb5f3ccb79c9adfe58ba Author: Alan Garny Date: Tue May 16 17:48:31 2017 +0200 Some minor cleaning up. commit e148e6eb5183e65d12c5d78dacac212667139ed3 Author: Alan Garny Date: Tue May 16 17:25:16 2017 +0200 Some minor cleaning up. commit d46636b845fb5ddbb5c765c8fbad01630ebca64e Author: Alan Garny Date: Tue May 16 17:04:42 2017 +0200 SUNDIALS package: prevent a CMake warning (#1306). commit ce0ca7451e0b78c62e5409f2199f3b02e9ab20ee Author: Alan Garny Date: Tue May 16 16:51:41 2017 +0200 Some minor cleaning up. commit 9f1bdc78c1329e1eccbde26f1938620b3c8b8aa2 Author: Alan Garny Date: Tue May 16 14:23:07 2017 +0200 SUNDIALS package: make sure that it can be found (#1306). commit 2bd4be8cfa490b89de6a39788a660dbadf1415df Author: Alan Garny Date: Tue May 16 14:20:18 2017 +0200 SUNDIALS package: can now build it on macOS (#1306). commit 80d0ef92f1896a58a2edd1fa28b1c289a1e0e6ef Author: Alan Garny Date: Tue May 16 11:24:34 2017 +0200 Slight update to our third-party libraries page (#1306). commit 54e9e8fa8d3b1b27691db10448b496c535ef079f Author: Alan Garny Date: Tue May 16 10:24:40 2017 +0200 Removed '\''our'\'' copy of SUNDIALS (#1306). commit a042d9f53fb8d0443882767591f427f29dfd8d2c Author: Alan Garny Date: Tue May 16 10:24:14 2017 +0200 Renamed `USE_PREBUILT_SUNDIALS_PLUGIN` to `USE_PREBUILT_SUNDIALS_PACKAGE` (#1306). commit 3a7fd9c78a429521ca74e68d1f9978e8e61a7b79 Author: David Brooks Date: Tue May 16 15:18:44 2017 +1200 Bundle our Python packages in their own plugin (#1310). commit dfbc536061c5f027a889aeea77499d6ddeca8dc0 Author: David Brooks Date: Tue May 16 15:16:27 2017 +1200 Python package distributions don'\''t always have binary files that require SHA1 checking, so remove requirement to have at least one file (#1310). commit 6256a0aa1eacc85d00c5cd4ae4764da12ef1fced Author: David Brooks Date: Tue May 16 14:36:34 2017 +1200 Export Python version and site packages directory; tidy up CMake code (#1310). commit 87749fae903d4dfc205d81f6b8154153d28d665d Author: David Brooks Date: Tue May 16 14:35:09 2017 +1200 Pass full path as destination directory of an external package (#1106). commit 1365c1c54e8e58d0f18c9287f8052f66b4a09650 Author: David Brooks Date: Tue May 16 14:31:08 2017 +1200 Changed our license to GPL v3.0 (#1301). commit 849924a02cdb279e2df9ad85aba9c400c070cb41 Author: Alan Garny Date: Mon May 15 17:46:47 2017 +0200 OAuth plugin: make sure that we distinguish between package and plugin names (#1306). commit 0680215fee8f10265920a6bff9d7bec703207883 Author: Alan Garny Date: Mon May 15 17:37:14 2017 +0200 Some minor cleaning up. commit b0e48ed4373c16693a1267602937a549aa7c68e3 Author: Alan Garny Date: Mon May 15 17:36:32 2017 +0200 OAuth package: binaries for Windows, Linux and macOS (#1306). commit 837e2830054b88df013976bdbac5d9cc1aade15f Author: Alan Garny Date: Mon May 15 17:30:51 2017 +0200 OAuth package: the name of the package in GitHub is actually o2 and not OAuth (#1306). commit 4555952338a84d7f800530ef2516d68a599e5eaa Author: Alan Garny Date: Mon May 15 17:23:22 2017 +0200 Some minor cleaning up. commit 649f7f4a7efebbb78c542e465cdff8251ad117a4 Author: Alan Garny Date: Mon May 15 17:22:28 2017 +0200 OAuth package: binaries for Windows, Linux and macOS (#1306). commit bad2015b5054d3aa51e4226d4bdad08c07fdca73 Author: Alan Garny Date: Mon May 15 17:18:07 2017 +0200 OAuth package: fixed a versioning issue on Linux and macOS (#1306). commit 9a5feb723a572b38488b7bdc3f720a2a67395d4f Author: Alan Garny Date: Mon May 15 17:03:45 2017 +0200 OAuth package: fixed a versioning issue on Linux and macOS (#1306). commit 94536e1d370e8e31396ced05da6dbdccc24ad2ad Author: Alan Garny Date: Mon May 15 16:46:17 2017 +0200 Some minor cleaning up. commit f3a21c2e8db538f26e66396800a7431952fa3ce7 Author: Alan Garny Date: Mon May 15 16:44:45 2017 +0200 OAuth package: binaries for Windows, Linux and macOS (#1306). commit 7d1b498cf889938498628b32f8f1f65e627174ad Author: Alan Garny Date: Mon May 15 16:43:24 2017 +0200 OAuth package: address some more warnings on Windows (#1306). commit c3617f5e43c9fe92b3e4a90b553ec1ac0070d48a Author: Alan Garny Date: Mon May 15 16:23:11 2017 +0200 Get ready to build the OAuth package. commit b525dcef8496653167b29ddd1cfe27598fbcc757 Author: Alan Garny Date: Mon May 15 16:21:55 2017 +0200 OAuth package: build it with o2_WITH_OAUTH1 enabled (#1306). commit 3a0fd53e4109cca5179137c248898a29c5023868 Author: Alan Garny Date: Mon May 15 15:45:27 2017 +0200 Some minor cleaning up. commit d56174e5aae32fe70981d90a91222f6ef151df89 Author: Alan Garny Date: Mon May 15 15:44:32 2017 +0200 OAuth package: build the Windows, Linux and macOS binaries (#1306). commit 97e8ee097d82b051e000b7256f3dbe01977bedd6 Author: Alan Garny Date: Mon May 15 15:39:53 2017 +0200 OAuth package: make sure we don'\''t get any warnings on Windows (#1306). commit 986873408b28da4c2b1749eef6e21e94e792d362 Author: Alan Garny Date: Mon May 15 14:50:04 2017 +0200 Some work on building the OAuth package (#1306). commit 88487303dca3221ca8c5706384212a6452507fa2 Author: Alan Garny Date: Mon May 15 11:06:21 2017 +0200 Some minor cleaning up. commit 56c2f3291279395dc275a9465c623707b0ab6af4 Author: Alan Garny Date: Sun May 14 18:49:36 2017 +0200 libgit2 relies on the minor version for the name of its main shared library (#1306). commit ee801757fad6ce172951717173b574d2dabf46eb Author: Alan Garny Date: Fri May 12 16:00:38 2017 +0200 Some minor cleaning up. commit dba2a78d9fca67bf7725d51dc241d06bd1e2d5ae Author: Alan Garny Date: Fri May 12 15:38:28 2017 +0200 Some minor cleaning up. commit fe2617062412ab762bc88c3f5246d1899df5f1ab Author: Alan Garny Date: Fri May 12 15:33:24 2017 +0200 Slight update to our prerequisites page. commit c1aad7b1241a6d9c1f261f0c1dab7d23069edbd6 Author: Alan Garny Date: Fri May 12 15:13:59 2017 +0200 Some minor cleaning up. commit c5b50e5c235ff79336db6519105e3b4e6a11d91f Author: Alan Garny Date: Fri May 12 15:12:56 2017 +0200 Generated our various LibXDiff binaries (#1306). commit 49b96cea72a1cafabc20a0a65075ced519e80fb3 Author: Alan Garny Date: Fri May 12 15:12:47 2017 +0200 LibXDiff: prevent warnings when building a debug version on Windows (#1306). commit f827b7b067adf88b29fdeb16b9057d8726aa8cad Author: Alan Garny Date: Fri May 12 15:02:54 2017 +0200 Slight update to our CREATE_PACKAGE_FILE() CMake macro (#1306). commit a18c9c5ada0da9a4449e5955874c8d4d9665e561 Author: Alan Garny Date: Fri May 12 14:50:44 2017 +0200 Make sure that LibXDiff builds fine on Windows (#1306). commit f7886d5b9794382b106665cad28c7cd10acdf8d2 Author: Alan Garny Date: Fri May 12 14:43:52 2017 +0200 Some minor cleaning up. Also make sure that we use the right version information for LibXDiff (#1306). commit 53aca3942355dc522992030e4094c502ec73ac70 Author: Alan Garny Date: Fri May 12 13:24:22 2017 +0200 Some work on building LibXDiff using ExternalProject_Add() (#1306). commit 10488a9a42a700364eee2976f90ac36136d260ad Author: Alan Garny Date: Fri May 12 13:23:18 2017 +0200 Some minor cleaning up. commit d11da137ff2ba8619e957c7d16ea27f7889153fd Author: Alan Garny Date: Fri May 12 09:44:21 2017 +0200 Some minor cleaning up. commit 91147fccca0f39596cc7798a2e94cbce4ba86a2b Author: David Brooks Date: Fri May 12 19:01:01 2017 +1200 Fix bad merge into branch (#1306). commit 962106d00c8ff806510dbda9dc3ba67128607af8 Author: David Brooks Date: Fri May 12 17:40:39 2017 +1200 Rename `Python` plugin to `PythonLibrary` (#1310). commit 8d9618f92d7aa324f15b2bd294e338b0a2b904c7 Author: David Brooks Date: Fri May 12 10:42:21 2017 +1200 Update Python build script for new packaging mechanism (#1106). commit c1ef0cc540cd8e2462e4fad0933ce5db0c16f011 Author: Alan Garny Date: Thu May 11 14:59:07 2017 +0200 Some minor cleaning up. commit 5ef326e340fdf2e15a402ec9529b41c23ed87acd Author: Alan Garny Date: Thu May 11 11:51:49 2017 +0200 Some minor cleaning up. commit b7f35c6eb9854c5b42a064c59aa25105315fbec4 Author: Alan Garny Date: Thu May 11 11:32:05 2017 +0200 Removed our copy of LibXDiff (#1306). commit 5183d267e1d7cbdca0b795f7a1cb69023d043823 Author: Alan Garny Date: Thu May 11 11:03:43 2017 +0200 Renamed USE_PREBUILT_LIBXDIFF_PLUGIN with USE_PREBUILT_LIBXDIFF_PACKAGE (#1306). commit ca5982fa8bfb7f0cf31e8ac20f1915a9a1d58804 Author: Alan Garny Date: Thu May 11 10:57:56 2017 +0200 Generated libgit2 binaries for Windows, Linux and macOS (#1306). commit 4351a792be711c4f50426c6f5d206022ab25fb18 Author: Alan Garny Date: Thu May 11 09:18:51 2017 +0200 Various cleaning up following the merging of issue #1101 (#1306). commit 3ee859b5c3128aaf4b20bcc8c8da7bc205fe405c Merge: b582fc8b3 d2d30adba Author: Alan Garny Date: Thu May 11 08:52:48 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 2dedd66b30b3f35460a30df05af740c1fc0984c8 Merge: b86a2adef d2d30adba Author: David Brooks Date: Thu May 11 09:52:51 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit d2d30adbac6cac69cfe230fab883862ab9091516 Merge: 5737e132e 403a7b27d Author: Alan Garny Date: Wed May 10 20:07:50 2017 +0200 Added OpenSSL as a third-party plugin (closes #1101). commit 403a7b27dd931480fca976db065a15bb738e281a Author: Alan Garny Date: Wed May 10 18:57:11 2017 +0200 Slight update to our downloads page (#1101). commit 5f9e158b0a77bdaa51c19a4d36462d5207c0d278 Author: Alan Garny Date: Wed May 10 18:40:46 2017 +0200 Argh, we actually need to make the OpenSSL libraries writable on Linux too (#1101). commit 9d1832b5d0da7b835e0d3d8faec751de901e4526 Author: Alan Garny Date: Wed May 10 18:14:59 2017 +0200 Some minor cleaning up. commit 4d8885b8515fcba5afa4f52dff188813dd4fee31 Author: Alan Garny Date: Wed May 10 17:57:19 2017 +0200 Some minor cleaning up. commit 194c6d4380544c4e90868f88e95bd0f936f20a1c Author: Alan Garny Date: Wed May 10 17:07:10 2017 +0200 Some minor cleaning up (#1101). commit c86cb8ecebbb1abc98d1d8dcc2261e9397fe1196 Author: Alan Garny Date: Wed May 10 16:57:25 2017 +0200 Fixed a small problem with the report on how to call RETRIEVE_PACKAGE_FILE() (#1101). commit 5831a79e8174b5d717cfe97cc90b7799a4de830c Author: Alan Garny Date: Wed May 10 16:30:31 2017 +0200 Argh, we actually need to make the OpenSSL libraries writable on Linux too (#1101). commit b0a6701cd047281a63261291baca3067ddebbbf5 Author: Alan Garny Date: Wed May 10 16:16:03 2017 +0200 Some minor cleaning up (#1101). commit 54348e1890ca86e38aadfde5731a0c5082ae14b2 Author: Alan Garny Date: Wed May 10 14:22:45 2017 +0200 Removed the manual installation of OpenSSL on Windows and Linux (#1101). commit a14abc89c0bf279e9e281c5ab2828e4c54c73fa2 Author: Alan Garny Date: Wed May 10 14:08:22 2017 +0200 Some minor cleaning up. commit 23cc6a94ef6d4c77f0c19397cfb8245c450c37d4 Author: Alan Garny Date: Wed May 10 14:04:19 2017 +0200 Only let OpenCOR know about the options (with which it was built) that it needs. commit e3135d17f33b1da70d07dcd72203b0a887fca8e9 Author: Alan Garny Date: Wed May 10 13:53:59 2017 +0200 Replaced `USE_PREBUILT_OPENSSL_PLUGIN` and `USE_PREBUILT_ZLIB_PLUGIN` with `USE_PREBUILT_OPENSSL_PACKAGE` and `USE_PREBUILT_ZLIB_PACKAGE`, respectively (#1101). commit f17ccd71f08bfb3308567c3d0f66af6554b9d22f Author: David Brooks Date: Wed May 10 20:37:17 2017 +1200 Some minor cleaning up (#1101). commit 3fd15aa7f85c40b74aa85800c957a3f5187271c9 Author: David Brooks Date: Wed May 10 15:23:06 2017 +1200 Update SHA1 values for Windows build (#1101). commit e65aebaf98e1e933b1a954d2bfefa988efb7d239 Author: David Brooks Date: Wed May 10 14:12:12 2017 +1200 Update SHA1 values for Linux build (#1101). commit ee5cae590ce4a41cef0bc0658ec8cf492de6b61a Author: David Brooks Date: Wed May 10 13:23:02 2017 +1200 Build OpenSSL as a package (#1101). commit 5a108a6ef8e978c5e8d9a901e2ffd916d8a14703 Author: David Brooks Date: Wed May 10 13:19:30 2017 +1200 Tweaks to packaging system (#1106). commit b582fc8b3795a40983a29b8eca2ec2eb968480c3 Author: Alan Garny Date: Tue May 9 20:13:46 2017 +0200 Some minor cleaning up. commit 71737b3695f5f2b5647ba894ed91f2527e1972bb Author: Alan Garny Date: Tue May 9 20:10:06 2017 +0200 Some minor cleaning up (#1306). commit 147e9fa68a1df8fa1924954588236f89ebc0d9b2 Author: Alan Garny Date: Tue May 9 19:53:29 2017 +0200 Can now build libgit2 as a package on Windows (#1306). commit 5185adf6432ec5bdaca643ade79397d504cec3d9 Author: Alan Garny Date: Tue May 9 17:41:14 2017 +0200 libgit2: use the maint/v0.25 rather than the v0.25.1 tag since we had to patch it (#1306). commit a948ed8b8159d0e3c6852a0708b9a3e797b356fd Author: Alan Garny Date: Tue May 9 17:40:22 2017 +0200 Some minor cleaning up. commit bb243e99f9f9b4224165f708dee7139ca26401b8 Merge: 54722fb3d 5737e132e Author: Alan Garny Date: Tue May 9 17:29:03 2017 +0200 Merge branch '\''master'\'' into issue1306. commit 5737e132e3e3b1a3908566c32dc231c331db5e6a Merge: 17bb1f255 8fa1e18d6 Author: Alan Garny Date: Tue May 9 17:16:18 2017 +0200 General: OpenGL now works in an Ubuntu virtual machine (closes #1307). commit 8fa1e18d6a4b31a12c4ff5c83f6c5861764592e2 Author: Alan Garny Date: Tue May 9 16:39:47 2017 +0200 Slight updates to our downloads pages (#1307). commit ec21bc07022c83a782fbcfed08e5caaae6f8c778 Author: Alan Garny Date: Tue May 9 16:32:29 2017 +0200 General: OpenGL now works in an Ubuntu virtual machine (#1307). commit 54722fb3d23ac045d2e09a7f321f9508a03a4da2 Author: Alan Garny Date: Tue May 9 15:34:07 2017 +0200 Can now build libgit2 as a package on macOS (#1306). commit 167ea3d0efbba5e079d47c1dc7cb728995bb7ad9 Author: Alan Garny Date: Tue May 9 13:12:54 2017 +0200 Some minor cleaning up. commit c50fea3be66147983c2221c33f17a4068fd69d3c Author: Alan Garny Date: Mon May 8 16:49:16 2017 +0200 zlib: prevent some warnings on Windows. commit 17bb1f25584188f8ca5d839bf6b0c7f66dd396dd Merge: 82eb8c133 88470fbe6 Author: Alan Garny Date: Sun May 7 17:43:33 2017 +0200 New snapshot. commit 88470fbe6549246b65c606aa2ce6e81d783b84f8 Author: Alan Garny Date: Sun May 7 17:04:41 2017 +0200 New snapshot. commit 82eb8c133ef7c6054b85d886fde568ee93b9f87e Merge: 2e9d16668 2f80d747d Author: Alan Garny Date: Sun May 7 16:59:35 2017 +0200 Changed our license to GPL v3.0 (closes #1301). commit 2f80d747dd56a388bb38644a522cd646ea904e0c Author: Alan Garny Date: Sun May 7 16:09:53 2017 +0200 Slight update to our downloads page (#1301). commit b4d99563a14f79a75dd9ce4e903ad7ee34cf3d46 Author: Alan Garny Date: Sun May 7 16:01:47 2017 +0200 Updated our license blurb at the beginning of source files (#1301). commit 80e6cce0d4d853e1f5ab6424505b2ea7d545a441 Author: Alan Garny Date: Sun May 7 07:39:42 2017 +0200 Updated our license itself (#1301). commit 023a4819f30c67919cf56580b2f446c5137af178 Author: Alan Garny Date: Sun May 7 07:30:25 2017 +0200 Updated our third-party libraries page (#1301). commit 2e9d166685738c0d6e175bfc96a87501695f0614 Merge: d4e2f7a63 80fe32ceb Author: Alan Garny Date: Sat May 6 20:25:52 2017 +0200 Can now download an official version of OpenCOR from either the OpenCOR website or GitHub (closes #1154). commit 80fe32cebf600097561ee73e24e7bd8da40b1b3e Author: Alan Garny Date: Sat May 6 20:20:00 2017 +0200 Slight update to the downloads page (#1154). commit 0bedba9b74712b11b40eed6546f0da806bd2f7e8 Author: Alan Garny Date: Sat May 6 20:16:59 2017 +0200 Now show a drop-down menu whenever we click on a download link (for an official version of OpenCOR). The drop-down menu allows to select to download OpenCOR from either '\''here'\'' or GitHub (#1154). commit ec28e8b42f7a75c7b73c29c464595eb7630a5128 Author: Alan Garny Date: Sat May 6 20:12:20 2017 +0200 Some minor cleaning up. commit 04853cb28883b8ffebf8f4fbaf2be7f4447fe523 Author: Alan Garny Date: Sat May 6 19:11:21 2017 +0200 Some minor cleaning up. commit 4a71ba1903f7c02edf1dbf07f6abf784d7adfc63 Author: Alan Garny Date: Sat May 6 13:18:38 2017 +0200 Now provide two download sites for official versions of OpenCOR (#1154). commit 03829e4025288ccc1dfb5873cfe0ced88b9fc78e Author: Alan Garny Date: Sat May 6 13:09:07 2017 +0200 Some minor cleaning up. commit f5b5f55552f1163fc4f51a13503d435fbefbac26 Author: Alan Garny Date: Sat May 6 12:15:28 2017 +0200 Make sure that the contents menu reflects the fact that we have snapshots or not (#1154). commit b3f0f66f477dc8f84b6f746e01b8bd8fec7be0ff Author: Alan Garny Date: Sat May 6 12:01:54 2017 +0200 Some minor cleaning up. commit 467a725871c292fd69e13e40ac115b386f424d2c Author: Alan Garny Date: Sat May 6 10:04:28 2017 +0200 Mention that official versions of OpenCOR can be downloaded both from the OpenCOR website and from GitHub. Show some information about the snapshots, if any (#1154). commit d4e2f7a63cc3cc1b06dd8573b7485e3efa7a379a Merge: 5bd656faf c81d1b450 Author: Alan Garny Date: Fri May 5 20:17:39 2017 +0200 General: now provide a mechanism to package and download pre-built libraries (closes #1106). commit c81d1b45000f64a6f3fec9c99875b9ec8a9d9f4c Merge: baee3f76a 340294aee Author: Alan Garny Date: Fri May 5 19:33:14 2017 +0200 General: now provide a mechanism to package and download pre-built libraries (#1106). commit 340294aee45de9b3598a31054aef3abbeb5874a2 Author: Alan Garny Date: Fri May 5 19:29:57 2017 +0200 Slight updates to our downloads pages (#1106). commit 5a771ffcecd84970f1effda2a956bf907ae1c6a7 Author: Alan Garny Date: Fri May 5 19:22:14 2017 +0200 Retrieve our package files directly from GitHub (#1106). commit d562dcfd8fe4cf543b6cefea85c797d018eea9d4 Author: Alan Garny Date: Fri May 5 16:35:12 2017 +0200 Getting ready to generate new zlib package binaries (#1106). commit 742593f98c291765698adcc951e7c2e936ef9686 Author: Alan Garny Date: Fri May 5 16:28:43 2017 +0200 Have a package file generated in our main build directory, so that it'\''s easier to find (#1106). commit 82d3595eca449128c1b4267e045233a3c5a3f8ef Author: Alan Garny Date: Fri May 5 16:21:15 2017 +0200 Generate a package file that can be uploaded on GitHub (#1106). commit fd3e70c5275108903eae5f35f0287c2932976653 Author: Alan Garny Date: Fri May 5 16:06:28 2017 +0200 Make sure that we properly generate the information about the call to the RETRIEVE_PACKAGE_FILE() macro (#1106). commit 7a51b560259c32de6bec814fd91ff4aa82d436cd Author: Alan Garny Date: Fri May 5 14:24:48 2017 +0200 Output to the console the RETRIEVE_PACKAGE_FILE() call that needs to be made (#1106). commit bd27f6492a72c63afa2e1496112883272cf917dd Author: Alan Garny Date: Fri May 5 13:58:44 2017 +0200 Make sure that we report the case where a file/package couldn'\''t be uncompressed (#1106). commit e8341229e91efe2a20aea0613af8055028593f76 Author: Alan Garny Date: Fri May 5 13:39:06 2017 +0200 Make sure that we have at least one file to check when calling the RETRIEVE_PACKAGE_FILE_FROM() macro (#1106). commit 0314ea6f27f4d685e787aae21f99c986a0be66dd Author: Alan Garny Date: Fri May 5 13:38:33 2017 +0200 Cleaned up the RETRIEVE_PACKAGE_FILE_FROM() and RETRIEVE_BINARY_FILE_FROM() macros (#1106). commit fd09d0fffdb97989a70e329d8846aefbd472b44d Author: Alan Garny Date: Fri May 5 13:05:31 2017 +0200 Some minor cleaning up. commit f611d706fa6a1b54514670e8797fa27c4f50cbec Author: Alan Garny Date: Fri May 5 12:48:47 2017 +0200 Some minor cleaning up. commit b86a2adef9f78d516d7881d6deccc695e2a42a06 Author: David Brooks Date: Fri May 5 11:23:14 2017 +1200 Cleanup: Remove unused sample plugin (#1206). commit a184b73df277bb30363f874a594744cf5cc12e04 Author: David Brooks Date: Fri May 5 11:19:37 2017 +1200 Cleanup: Remove the `Single Cell` view sources from the Python branch... (#1256). commit ab604e86010285a494716ea908eac821390f7071 Merge: 66cca664f 5bd656faf Author: David Brooks Date: Fri May 5 11:08:38 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 10c1abb2647242d5a5bcf9123bfc606e73174d18 Author: Alan Garny Date: Wed May 3 17:02:16 2017 +1200 Some minor cleaning up. commit ecbb05c59a6dc08d16bc4e33ca23fd78bd4df67e Author: Alan Garny Date: Wed May 3 17:01:28 2017 +1200 Some minor cleaning up. commit deaccd46e316e653c2a232440614de15cc21e9c4 Author: Alan Garny Date: Wed May 3 16:54:57 2017 +1200 Reverted our use of CHECK_SHA1_FILES() back in favour of CHECK_FILES(). Also introduced a convenience macro: CHECK_FILE() (#1106). commit bbf2d9925cca281730d48a8c1f6dcfc54d2ecc4b Author: Alan Garny Date: Wed May 3 16:45:49 2017 +1200 Cleaned up CHECK_SHA1_FILES() (#1106). commit 63c4827c608641b993ccf635c4e45712561f8c3e Author: Alan Garny Date: Wed May 3 16:35:38 2017 +1200 Use CHECK_SHA1_FILES_OK rather than CHECK_SHA1_FILES_FAILED (#1106) Kind of positive attitude… :) commit 5f2d63d52130a714bd35af87ab6688de77d383b3 Author: Alan Garny Date: Wed May 3 16:23:49 2017 +1200 Renamed CHECK_FILES() with CHECK_SHA1_FILES() (#1106). commit d43ee3e697e1f82039298e49c811d6d2557e4299 Author: Alan Garny Date: Wed May 3 16:13:55 2017 +1200 Cleaned up the CREATE_PACKAGE_FILE() macro (#1106). commit 2746bcaaf1206256e6b8e332a50898af89b3c536 Author: Alan Garny Date: Wed May 3 15:56:56 2017 +1200 Some minor cleaning up. commit e35deefcaf11b10a1c0a2c484c64e64f81b4ae3f Author: Alan Garny Date: Wed May 3 15:56:27 2017 +1200 Cleaned up the CREATE_PACKAGE_FILE() macro (#1106). commit 4286abfe497c0a04cd37b9664dd842b244e77430 Author: Alan Garny Date: Wed May 3 14:59:14 2017 +1200 Some minor cleaning up. commit d704992ee12a48a0cf29a0bc292856ccaa594682 Author: Alan Garny Date: Wed May 3 14:18:00 2017 +1200 Some minor cleaning up. commit 8f31fa8e69da807afbe2729a4b06895bf8b5c74c Author: Alan Garny Date: Wed May 3 14:13:25 2017 +1200 Some minor cleaning up. commit 87d2063a1f3559d4630e0f6b35f9b5602408d30f Author: Alan Garny Date: Wed May 3 14:03:19 2017 +1200 Some minor cleaning up. commit c1d79c58978f2fe9892e1daa30210570e76cfb35 Author: Alan Garny Date: Wed May 3 14:00:44 2017 +1200 ADD_PLUGIN(): make sure that various commands are either executed directly or through a custom target based on the plugin'\''s situation (#1106). commit eee16ac12f3cf60be526743388cba251049cfffa Author: Alan Garny Date: Wed May 3 13:36:40 2017 +1200 Some minor cleaning up. commit c8a44120b974849d6dcc4dffdc14915a2a49edce Author: Alan Garny Date: Tue May 2 14:57:40 2017 +1200 Addressed an issue with Ninja with regards to copying OpenCOR.com. commit 5a26c1825f11b1c650ea959f77876f92049eba34 Author: Alan Garny Date: Tue May 2 14:35:46 2017 +1200 Some minor cleaning up. commit 5af5dcfa1fa64f5189b4b4aab54183f236885d29 Author: Alan Garny Date: Tue May 2 14:35:12 2017 +1200 Replaced '\''DEPENDS'\'' with '\''DEPENDS_ON'\'' in ADD_PLUGIN(). commit 9a5f037ffca028b3e5c6a0c0a66744c1946582b9 Author: Alan Garny Date: Tue May 2 14:25:38 2017 +1200 Some minor cleaning up. commit 5cd7d2101742ff4310db2391a15fb381ebe9bdb6 Author: Alan Garny Date: Tue May 2 13:50:41 2017 +1200 Some minor cleaning up. commit e6ef6a1f1dd56481e93e1566278a2d818d92cb1a Author: Alan Garny Date: Tue May 2 13:49:11 2017 +1200 Make sure that a package is retrieved in the right directory (#1106). commit 587c89ca934bb04a9c1872c98f1a6a11f02a6e84 Author: Alan Garny Date: Tue May 2 11:34:48 2017 +1200 Some minor cleaning up. commit fa3215a9a932e9fc6637e4a6a1ab42742cb67d7c Author: Alan Garny Date: Tue May 2 11:04:22 2017 +1200 Updated our SHA-1 values (#1106). commit 32f8b90525d922e4d76ed43789e6d479f4b4f3e0 Author: Alan Garny Date: Tue May 2 10:32:32 2017 +1200 Various cleaning up (#1106). - Simplified our versioning mechanism for zlib; - Replaced '\''external'\'' with '\''ext’; - Moved the '\''zlib'\'' contents to '\''ext/proj’; - Changed the order of some parameters in CREATE_PACKAGE_FILE(), RETRIEVE_PACKAGE_FILE() and RETRIEVE_PACKAGE_FILE_FROM(); - Replaced ‘CHECKED_FILES’ with ‘SHA1_FILES’; - Use our forked version of zlib; - Updated the SHA-1 values for zlib, now that the zlib package is hosted on opencor.ws; - Various minor cleaning ups. commit ae239a843933c0b0ced7a18e020e965457c16dda Author: Alan Garny Date: Tue May 2 10:24:01 2017 +1200 Some minor cleaning up. commit baee3f76abadb1b24bf768803dc5561770f7f107 Merge: 5bd656faf a71a54a76 Author: Alan Garny Date: Tue May 2 10:02:05 2017 +1200 Merge remote-tracking branch '\''dbrnz/issue_1106'\'' into issue1106. commit 5bd656fafd09a6ae197fbcfbe1054f06fe87b296 Merge: 29df012df f74a4bdc4 Author: Alan Garny Date: Fri Apr 28 15:52:08 2017 +1200 Some minor tweaks to make it possible to build OpenCOR on Ubuntu 16.04 LTS. commit f74a4bdc4067970e4792c2f24cdecbf8c7970e38 Author: Alan Garny Date: Fri Apr 28 15:17:06 2017 +1200 Force the use of GCC/G++ 4.9 on Linux. The idea is that we can then build OpenCOR just fine on Ubuntu 16.04 LTS. commit 2526dc5c563e2739b837eeb824037ae5b5dc19b3 Author: Alan Garny Date: Fri Apr 28 14:45:45 2017 +1200 Make sure that our cmake/runpath2rpath.c file builds fine on Ubuntu 16.04 LTS. commit 29df012df7d453073b7eaa6adc6107bed7d03005 Merge: c770ca274 4a88277c7 Author: Alan Garny Date: Fri Apr 28 13:30:00 2017 +1200 New snapshot. commit 4a88277c752b448b2ec0a95330646f0d3216788b Author: Alan Garny Date: Fri Apr 28 13:00:33 2017 +1200 New snapshot. commit c770ca2740b71c8f6070fbab9386eaa92be013a1 Merge: 381979f9f 1d662471a Author: Alan Garny Date: Fri Apr 28 10:43:51 2017 +1200 PMR Workspaces window: provide more succinct diff results (closes #1294). commit 1d662471aa8659514dfc12885a17ae0f54a47b3a Author: Alan Garny Date: Fri Apr 28 10:10:34 2017 +1200 Slight update to our downloads page (#1294). commit 8af7e3392536db5151db83bf092f8fe11bd1ab28 Merge: 0adb69e9a b498eff0f Author: Alan Garny Date: Fri Apr 28 10:06:29 2017 +1200 Merge branch '\''cleaning-up'\'' into issue1294. commit 0adb69e9a05eb73edab5845560da5c8840ba7f0d Author: Alan Garny Date: Fri Apr 28 09:30:03 2017 +1200 PMR Workspaces window: slight CSS improvement for our synchronisation dialog (#1294). commit 0b18297d6425e3cbbd7b44417d684a4c04366808 Author: Alan Garny Date: Fri Apr 28 09:23:18 2017 +1200 Some minor cleaning up (#1294). commit 3188abb5a8ebae0cab016789c756439ff02d4bd1 Author: Alan Garny Date: Thu Apr 27 23:14:01 2017 +1200 PMR Workspaces window: highlight local changes within a block of changes in the synchronisation dialog (#1294). commit c88da201b9771e769ab8bc2d484b2655a0faf6fe Author: Alan Garny Date: Thu Apr 27 23:05:56 2017 +1200 Replaced instances of "x" (where x is only one character) with '\''x'\''. Indeed, various Qt methods are optimised for use with a character as opposed to with a string. commit 7aaddc755a66010851f7c501279a3d57e7805d35 Author: Alan Garny Date: Thu Apr 27 18:31:39 2017 +1200 PMR Workspaces window: make sure that we always have an item selected in the synchronisation dialog after changes have been made outside of OpenCOR (#1294). commit 8ab89e2e597bd29df9226283df32487724dd0f6a Author: Alan Garny Date: Thu Apr 27 16:25:03 2017 +1200 Removed our reset CLI test since it resets (!!) all of our settings, which can be a pain when testing/debugging things. commit 75b84ba3c3019eae1827ac589a990e676689512e Author: Alan Garny Date: Thu Apr 27 16:18:32 2017 +1200 Fixed and improved the look of the last line of a diff report (#1294). commit 411c68f57263958c3f8ef4985ccad0d93a53ef81 Author: Alan Garny Date: Thu Apr 27 15:54:31 2017 +1200 Added a border to ‘separate’ our line numbers from the rest of the diff report (#1294). commit a1264312e4c52ad11d70e3939c86e92329cfeafc Author: Alan Garny Date: Thu Apr 27 15:33:09 2017 +1200 First go at having a UNIX-like diff report (#1294). commit 647e8dd0cc9c7252980dcb2b4431dc5d598cd569 Author: Alan Garny Date: Thu Apr 27 11:12:54 2017 +1200 Binaries for LibXDiff have now been generated for Windows, Linux and macOS (#1294). commit b148967eaff73a34f81a6f02e6926b95b3112f64 Author: Alan Garny Date: Thu Apr 27 11:01:34 2017 +1200 Getting ready to build only LibXDiff (#1294). commit ea42774853f5f1d0696ab1c68e0593f395b188c0 Author: Alan Garny Date: Thu Apr 27 11:00:30 2017 +1200 Some minor cleaning up (#1294). commit f74600a2118aae7c9e65685ac3cc916a4cfd8da4 Author: Alan Garny Date: Wed Apr 26 18:11:31 2017 +1200 Make sure that LibXDiff exports what we need on Windows (#1294). commit 5d66ac4308591a8b1e74a0c1119b32d01fa592be Author: Alan Garny Date: Wed Apr 26 17:43:55 2017 +1200 Some work on generating a UNIX-like diff (#1294). commit f656d192130e9f7ab3efffe9ae1f6368477f41fe Author: Alan Garny Date: Wed Apr 26 17:35:22 2017 +1200 Some work on generating a UNIX-like diff (#1294). commit 16d2009d141468e74f82112ecf620f37a238f72c Author: Alan Garny Date: Wed Apr 26 17:18:17 2017 +1200 Some work on generating a UNIX-like diff (#1294). commit 23b02e6c768904503747c1162e58eddc09e8f260 Author: Alan Garny Date: Wed Apr 26 17:17:29 2017 +1200 Always output the name of the file that has differences (#1294). commit 0f0d821fead703a52b647ddc86fe97bae11bddb6 Author: Alan Garny Date: Wed Apr 26 16:48:08 2017 +1200 Some work on adding LibXDiff as a third-party plugin (#1294). commit cf8139ade920eda7cc62c1736151d66648d65251 Author: Alan Garny Date: Wed Apr 26 16:45:42 2017 +1200 Some work on generating a UNIX-like diff (#1294). commit e26975f70a5bf832f987812f7fe39c0c75abf4fd Author: Alan Garny Date: Wed Apr 26 16:28:49 2017 +1200 Some work on adding LibXDiff as a third-party plugin (#1294). commit 50cc45857389061c029fc348e3ae21804c7efe67 Author: Alan Garny Date: Wed Apr 26 16:06:41 2017 +1200 Some work on adding LibXDiff as a third-party plugin (#1294). commit 8e7a09c1d8addedc6f032a99b326a70ffeeeb6ec Author: Alan Garny Date: Wed Apr 26 15:05:43 2017 +1200 Some work on adding LibXDiff as a third-party plugin (#1294). commit e42a9df6709c6b71c7d8da637a27dc9ba4172635 Author: Alan Garny Date: Wed Apr 26 13:59:48 2017 +1200 Some work on adding LibXDiff as a third-party plugin (#1294). commit 381979f9f486e58fc120edf457df8ecc1c115c91 Merge: b2e9aa130 b498eff0f Author: Alan Garny Date: Wed Apr 26 11:44:11 2017 +1200 Some minor cleaning up to our third-party libraries page. commit b498eff0fb2a5a82dc1617543ecc5c13e2fd6c03 Author: Alan Garny Date: Wed Apr 26 11:12:47 2017 +1200 Some minor cleaning up to our third-party libraries page. commit a71a54a764969516c6cf6db8844e1e37148a9585 Author: David Brooks Date: Tue Apr 25 21:34:34 2017 +1200 Pre-build zlib for Linux and Windows (#1106). commit 417eda290225d0c1bb528056b405d132fd0db011 Author: David Brooks Date: Tue Apr 25 19:26:19 2017 +1200 Tidy code. commit 8304134d4bf2445ec8c68104054831f1b815a616 Author: David Brooks Date: Tue Apr 25 19:23:05 2017 +1200 Use CMake'\''s `ExternalProject` to build zlib and then package library using new mechanism (#1106). commit d3025d609dc19801bcc380cc89cd0103d016b74b Author: David Brooks Date: Tue Apr 25 18:58:34 2017 +1200 Exclude `./external` directories from source code management (#1106). commit 21c0b60e93d261411f7f90a312e2cd0ffc550bdb Author: David Brooks Date: Tue Apr 25 18:53:21 2017 +1200 Add CMake code to package and download pre-built libraries (#1106). commit 66cca664f89b3490bc0c8a750cbbca515c833408 Merge: cb1cd9a2d b2e9aa130 Author: David Brooks Date: Tue Apr 25 12:43:31 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit cb578cb5f3df404d9a9915af9597013ee2632c3d Author: Alan Garny Date: Mon Apr 24 17:16:20 2017 +1200 PMR Workspaces window: replace our use of std::wstring with QString with regards to diff_match_patch (#1294). commit b2e9aa130574853bbda2182ac3344d4df4f3a98b Merge: 6ff1713ec fe0236f3a Author: Alan Garny Date: Sat Apr 22 00:45:03 2017 +1200 CLI: can now include/exclude a plugin to/from the GUI version of OpenCOR (#1292). commit fe0236f3ad7762516e56004b8a28324f8ffde39b Author: Alan Garny Date: Sat Apr 22 00:12:39 2017 +1200 Slight update to our CLI documentation (#1292). commit 1d703e8d91aea7539ca34f9a1845b3d1550086fc Author: Alan Garny Date: Fri Apr 21 23:47:43 2017 +1200 Updated our CLI tests (#1292). Argh, as for HelpWindow, PMRWindow also relies on QtWebKit and therefore on the ICU libraries, hence it doesn’t work on Travis-CI (see commit e7e3630 and look for MACOS_QT_LIBRARIES in our main CMakeLists.txt file). commit 485acd835ee460475d8703efc0d78faabb0644c9 Author: Alan Garny Date: Fri Apr 21 17:04:07 2017 +1200 Travis-CI: forgot to put the #'\''s back! commit e7e3630a9361b7e73e565988f78cae6d3c200881 Author: Alan Garny Date: Fri Apr 21 17:02:15 2017 +1200 Updated our CLI tests (#1292). The reason it was failing on Travis-CI is that libicui18n.so.56 couldn’t be found. So, test against the PMR window instead. commit c6821475ea3b04632dc8a8a8857892d089d37b80 Author: Alan Garny Date: Fri Apr 21 16:41:38 2017 +1200 Travis-CI: make sure that we at least have a script to run! commit eda8e64c705ed0f3aadb08de4d10460f68abbc4d Author: Alan Garny Date: Fri Apr 21 16:30:17 2017 +1200 Travis-CI: checking which gcc/g++ version we have before and after installing the gc//g++-4.9 packages. commit 9066372fef059ff2f716359670bf4cba08c747f8 Author: Alan Garny Date: Fri Apr 21 16:25:45 2017 +1200 Travis-CI: checking which g++ version we have before and after install the g++-4.9 package. commit 977c7f8e381b8d4266f61b38fdac315d49c2cf2a Author: Alan Garny Date: Fri Apr 21 16:13:59 2017 +1200 Travis-CI: trying to understand why we are getting some "plugin information not found" messages (#1292). commit d766d3ae9f88d6ac8a832a9334331b9c43128967 Author: Alan Garny Date: Fri Apr 21 16:05:33 2017 +1200 Travis-CI: checking which version we are actually using on Linux (#1292). commit 02eac7c8600d2e0f333092b3eaa81a53d61f4bca Author: Alan Garny Date: Fri Apr 21 15:37:04 2017 +1200 Travis-CI: trying to understand why we are getting some "plugin information not found" messages (#1292). Also added the lib32stdc++-4.9-dev package on Linux to see it prevents from having to build QScintilla (see commit e64a986). commit e64a986d2e0f04bd3ef23282c46f6b6d22a0ea91 Author: Alan Garny Date: Fri Apr 21 15:07:24 2017 +1200 Travis-CI: check whether we are still forced to build QScintilla on Linux. commit 685ccd7e5a85d8c08f72372518435df985aae38c Author: Alan Garny Date: Fri Apr 21 14:42:15 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView, CellMLTools and SampleTools plugins (#1292). commit 5a793dc3e213afbd6c8ef6daa735c310b8d33626 Author: Alan Garny Date: Fri Apr 21 13:57:40 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins (#1292). commit 31bd3fcfac027bdc112c2b1d0af8358938a5993e Author: Alan Garny Date: Fri Apr 21 13:49:36 2017 +1200 Updated our CLI tests (#1292). commit 9c66b6e1407d7fc4f5b6c94d928e1ad76d81bd19 Author: Alan Garny Date: Fri Apr 21 13:48:57 2017 +1200 Updated our CLI tests (#1292). commit 566bd4c3098f3436e06795848ed97126a820660e Author: Alan Garny Date: Fri Apr 21 13:15:43 2017 +1200 Updated our Downloads and What'\''s new pages (#1292). commit 45e2b78f4d7fc5d76a89f193609848d8aa5eae5b Author: Alan Garny Date: Fri Apr 21 13:09:45 2017 +1200 Updated our CLI documentation (#1292). commit 155652a9acc56bbe214da119ec7ff3ac40620b20 Author: Alan Garny Date: Fri Apr 21 13:03:09 2017 +1200 Can now include/exclude plugins (#1292). commit b7da3de7c36d6a7d99c4587d509c92be2c2406d5 Author: Alan Garny Date: Fri Apr 21 12:59:08 2017 +1200 Can now include/exclude plugins (#1292). commit 5478e3089e2addd9996fd7594bd4380e29252ead Author: Alan Garny Date: Fri Apr 21 12:58:34 2017 +1200 Some minor cleaning up. commit 7e1daaaf111983bfe7942d8171f85d9707f49073 Author: Alan Garny Date: Fri Apr 21 12:58:08 2017 +1200 CLI version: now accept the -e/-i options (but don'\''t do anything with them yet) (#1292). commit 050201db9019057d0aed2cd7ff51787c921c88c1 Author: Alan Garny Date: Fri Apr 21 11:27:46 2017 +1200 Some minor refactoring of our CLI code (#1292). commit f0a9a988a4efde02e6807adf8f09c05f67c0753b Author: Alan Garny Date: Fri Apr 21 11:27:10 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins (#1292). commit 499db088118f57f0a2459dfbdb6a7bfd07a6123a Author: Alan Garny Date: Fri Apr 21 10:52:58 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins (#1292). commit 6ff1713ecba46f6d5934248979928ae9516eb058 Merge: 062f984b1 535555a2b Author: Alan Garny Date: Fri Apr 21 10:06:54 2017 +1200 QtWebKit: stripped the binaries on Linux and macOS. commit 535555a2b2a1f7691ae5fd940533ca6ad9ba802f Author: Alan Garny Date: Fri Apr 21 09:26:43 2017 +1200 Travis-CI: trying to re-enable macOS builds... once again... commit 5a51fa683c7201ddc3c776152e63687facab75a7 Author: Alan Garny Date: Fri Apr 21 09:24:55 2017 +1200 QtWebKit: stripped the binaries on Linux and macOS. commit 062f984b109260195e34170ae25fc6d4cdb62a97 Merge: a7be571d2 91d38d40b Author: Alan Garny Date: Thu Apr 20 19:26:16 2017 +1200 Added support for Zinc (closes #15). commit 91d38d40b8e7a2d08b45124bd6998c513e9f8abf Author: Alan Garny Date: Thu Apr 20 18:52:15 2017 +1200 Updated our Downloads page (#15). commit 1d6df2178075c306e1cb0fdd22b2197e169a4e5d Author: Alan Garny Date: Thu Apr 20 18:42:19 2017 +1200 Slight update to our third-party plugins'\'' readme file (#15). commit 49ee46e969dc8f8dc76ac0cbb358238e4aa12a6b Author: Alan Garny Date: Thu Apr 20 18:23:20 2017 +1200 Make sure we can build on Travis CI (#15). commit fef234fe2aba801a317dd41d0cb5ee3409b0a62c Author: Alan Garny Date: Thu Apr 20 18:03:09 2017 +1200 Update our Core French translations (#15). commit 4481eb518d3002bc00f8fbba94d8b659767f3d1f Author: Alan Garny Date: Thu Apr 20 17:58:58 2017 +1200 Added support for test plugins (#15). commit f2593c48dd8f1fab326ff36646d55fb72552715f Author: Alan Garny Date: Thu Apr 20 17:58:06 2017 +1200 Properly reference the Zinc library in our list of third-party libraries (#15). commit 7d36ca560a694f50d2236e1ffd3327a0bb81d920 Author: Alan Garny Date: Thu Apr 20 17:57:41 2017 +1200 Added the Zinc library to our file structure documentation (#15). commit 4f746bb0ef440832bd13ac8fcea669c3a570cc39 Author: Alan Garny Date: Thu Apr 20 17:57:04 2017 +1200 Added support for test plugins (#15). commit b5f89d171ab3084a42ad1820044ee236dc7cdc5b Author: Alan Garny Date: Thu Apr 20 17:53:45 2017 +1200 Replaced ENABLE_SAMPLES with ENABLE_SAMPLE_PLUGINS (#15). commit d53d0d73b3a288358ec73a19b7b145cc5995c65d Author: Alan Garny Date: Thu Apr 20 17:43:53 2017 +1200 Updated/added the link to the Zinc library (#15). commit a21d41db485c973fdd5e055bcbe1d675a8f5d60b Merge: 93df3d1eb a7be571d2 Author: Alan Garny Date: Thu Apr 20 13:40:37 2017 +1200 Merge branch '\''master'\'' into issue15. commit a7be571d262f34396f490d5d56e85b244feb2fed Merge: 62dc278bc 4288c1654 Author: Alan Garny Date: Thu Apr 20 13:38:29 2017 +1200 PMR window: make sure that the busy widget always disappears (#1288). commit 4288c1654f2a2585dbe50f00c524e5da423605e6 Author: Alan Garny Date: Thu Apr 20 11:58:33 2017 +1200 Slight update to our downloads page (#1288). commit a9db51bb07f95d337d558df9748acfee19d5d5da Author: Alan Garny Date: Thu Apr 20 11:23:05 2017 +1200 Optimise our use of the busy widget for the PMR Workspaces window and the CellML Annotation view (#1288). commit 64943dec18562aa5f3985a96fde360ebe5819657 Author: Alan Garny Date: Thu Apr 20 11:22:23 2017 +1200 PMR window: make sure that the busy widget always disappears (#1288). commit 93df3d1ebc329f313c72672d80e070dea0ce5f4a Merge: 75afd04b5 62dc278bc Author: Alan Garny Date: Wed Apr 19 18:37:30 2017 +1200 Merge branch '\''master'\'' into issue15. commit 62dc278bc2a9d2c4079475999bad5eed9286080d Merge: eca792a00 a0e64ba7a Author: Alan Garny Date: Wed Apr 19 18:36:19 2017 +1200 Property Editor widget: don'\''t go to the next property anymore when cancelling the editing of a property (closes #1285). commit a0e64ba7ae8b701e726f03ce1e7dd87c78057b07 Author: Alan Garny Date: Wed Apr 19 18:04:07 2017 +1200 Property Editor widget: don'\''t go to the next property anymore when cancelling the editing of a property (#1285). commit 75afd04b57009b5f741742ee2dde52f37e6bf96b Author: Alan Garny Date: Wed Apr 19 17:11:37 2017 +1200 Deploy the xcbglintegrations on Linux (#15). We can’t use the menu and the Zinc window is completely black, but at least we are not seeing a ‘transparent’ OpenCOR (although the menu was working before we added those plugins). commit 9ec5d98d3070ea65807cc727b2b90e4c8f29ec23 Merge: ec732543f 2c6e2bc9e Author: Alan Garny Date: Wed Apr 19 15:08:11 2017 +1200 Merge branch '\''master'\'' into issue15. commit 2c6e2bc9e2dc9860ad9724fcd5d2161eb8b8ab38 Merge: d0820fb90 eca792a00 Author: Alan Garny Date: Wed Apr 19 15:07:28 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit eca792a002271e48bed60b8652221f79396dfb8d Merge: 37cd9cbdb d0820fb90 Author: Alan Garny Date: Wed Apr 19 15:07:06 2017 +1200 Slight update to our prerequisites page (following the release of Xcode 8.3.2). commit d0820fb90037d73587a86e64d7424d1c4b832954 Author: Alan Garny Date: Wed Apr 19 14:34:23 2017 +1200 Slight update to our prerequisites page (following the release of Xcode 8.3.2). commit ec732543f6c4a5ea7110b5af60f10cf6babb96dc Author: Alan Garny Date: Tue Apr 18 21:35:19 2017 +1200 Zinc widget: back to using QOpenGLWidget (#15). Not sure why, but the issue with the overall size of OpenCOR is still there!? commit b17afeaa73cade0b667b851215f4b7e0ba87e227 Author: Alan Garny Date: Tue Apr 18 21:25:40 2017 +1200 Zinc widget: trying with QGLWidget (#15). Although the rendering is now fine on macOS (yes, it wasn’t using QOpenGLWindow!?), there is still the issue of the overall size of OpenCOR. Also, although we can undock our Zinc window, we cannot dock it back (!?). Finally, when starting OpenCOR, the Zinc window has a black background for a split second. Bottom line: we are reverting to using QOpenGLWidget, even though it has some drawbacks… commit eb9b731fdd7d27efd2fea1f9e9fd56c887feaa3e Author: Alan Garny Date: Tue Apr 18 20:55:39 2017 +1200 Zinc widget: back to being a '\''proper'\'' widget (embedding a QOpenGLWindow-based window) (#15). Note: we are committing this, but… we are going to have to use another approach since creating a window container for our ZincWidgetOpenglWindow object results in the whole OpenCOR application being ‘small’ when first starting it or when resetting it all. It looks as if our various sizeHint() methods are not being taken into account. commit e457296ea8af9d9323a66f2f8fd1209c632c4121 Author: Alan Garny Date: Tue Apr 18 18:11:52 2017 +1200 Some minor cleaning up when it comes to using the opengl32sw.dll file on Windows (#15). commit eeccae3cee4608a5cec198d712f866efea9ee41a Author: Alan Garny Date: Tue Apr 18 15:58:55 2017 +1200 Rely on QOpenGLWindow rather than QOpenGLWidget (#15). To rely on QOpenGLWindow rather than QOpenGLWidget has several advantages including: - We dont’ have to handle the case where the OpenGL context is about to be destroyed (due to docking/undocking our Zinc window); and - Support for HiDPI resolutions works fine unlike with QOpenGLWidget. In other words, going from 1900x1200 to 1900x1200 HiDPI doesn’t result in the Zinc scene only taking a quarter of the window. However, we still have to handle the case of the font getting halved. commit f313b47161b4bc85c628ee2dd7fbf439909b1d3d Author: Alan Garny Date: Tue Apr 18 13:55:15 2017 +1200 Some minor cleaning up. commit 68ebc4cf9d3bec795104501e90ec9b364d699097 Merge: 698489d6b 37cd9cbdb Author: Alan Garny Date: Sun Apr 16 17:27:53 2017 +1200 Merge branch '\''master'\'' into issue15. commit 37cd9cbdbbdbd25624964479087387ca4e4a3658 Merge: 4af2740eb 46a7b4c7f Author: Alan Garny Date: Sun Apr 16 17:24:23 2017 +1200 CellML API: fixed a problem that caused OpenCOR to crash when defining a certain type of unit (closes #1278). commit 46a7b4c7f06db7a9c225138dcc092e98563bf8c2 Author: Alan Garny Date: Sun Apr 16 16:55:10 2017 +1200 Slight updates to our downloads and what'\''s new pages (#1278). commit 8ea10ee9413ad5d06a1dc7930feb55763a9de49b Author: Alan Garny Date: Sun Apr 16 16:47:30 2017 +1200 CellML API: new Windows binaries (#1278). commit 49440c679742ec36fe8ef7b71972322ddfd393d0 Author: Alan Garny Date: Sun Apr 16 16:39:21 2017 +1200 CellML API: new Linux binaries (#1278). commit 38d5b2a7859c87cfd0f834352d45932331f3a0ba Author: Alan Garny Date: Sun Apr 16 16:12:56 2017 +1200 CellML API: new macOS binaries (#1278). commit 4af2740ebb7e86e327012d82e2b0f8ff0776fc9b Merge: a889b0444 7cd09e2f7 Author: Alan Garny Date: Sun Apr 16 14:13:12 2017 +1200 Build system: make sure that the dependencies of external binaries are properly referenced (closes #1281). commit 7cd09e2f743f3675b0372297de0b916797f8daed Author: Alan Garny Date: Sun Apr 16 13:42:21 2017 +1200 Build system: make sure that the dependencies of external binaries are properly referenced (#1281). commit a25a67e8a76a99b70c6ecbfcd399679323a156e2 Author: Alan Garny Date: Sun Apr 16 13:35:16 2017 +1200 Some minor cleaning up. commit 698489d6b61cab42a7b9d70038e346ecd2ef79c0 Merge: 4f32a6900 a889b0444 Author: Alan Garny Date: Sat Apr 15 11:54:41 2017 +1200 Merge branch '\''master'\'' into issue15. commit a889b044493c861bd924d4a6d1999e1f02e2f0eb Merge: b954f9864 b2852e649 Author: Alan Garny Date: Sat Apr 15 11:47:24 2017 +1200 PMR-based windows: now clear the contents of those windows before switching instances (closes #1279). commit b2852e64942b4b39085dd18b5d105accd0c062f7 Author: Alan Garny Date: Sat Apr 15 11:11:39 2017 +1200 PMR-based windows: slight GUI improvement (#1279). commit c458c2c2b67d4d9d7fd7fce2fcb5fcd484348a42 Author: Alan Garny Date: Sat Apr 15 11:10:41 2017 +1200 Make sure that the showing/hiding of our busy widget is right (#1279). commit c30dc6cefc2e0341e4e7a0415798b2eab31f91b2 Author: Alan Garny Date: Sat Apr 15 10:41:59 2017 +1200 Slight update to our downloads page (#1279). commit b4414965b1c182f9c71417c8f960ca052549f267 Author: Alan Garny Date: Sat Apr 15 10:38:47 2017 +1200 PMR-based windows: now clear the contents of those windows before switching instances (#1279). commit e0857c28bee59c8e4ba54cc4719a65c3a5b97ca7 Merge: 681d19475 b954f9864 Author: Alan Garny Date: Sat Apr 15 09:51:22 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit 4f32a69007ccd015e218e03fcb5ecf3f296ee515 Merge: aa7398dc7 b954f9864 Author: Alan Garny Date: Sat Apr 15 09:50:49 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' into issue15 commit aa7398dc700ddd8c7fa94c7a90c12433c3782ac6 Author: Alan Garny Date: Fri Apr 14 12:02:40 2017 +1200 Zinc support: make sure that everything always works fine on Windows (#15). commit 57d812cb8adf610e2dc104a50b0df0b022e6be87 Merge: 8dbdc7486 681d19475 Author: Alan Garny Date: Thu Apr 13 21:35:27 2017 +1200 Merge branch '\''master'\'' into issue15. commit b954f9864de3389fb5432a8e7ec061ff913dc345 Merge: af7a7bd9b 681d19475 Author: Alan Garny Date: Thu Apr 13 20:39:03 2017 +1200 Simulation Experiment view: slight update to our French translation file. commit 681d194759f366800f448900b6db67573c857092 Author: Alan Garny Date: Thu Apr 13 20:08:36 2017 +1200 Simulation Experiment view: slight update to our French translation file. commit 8dbdc7486f8af49aa8ed66e61fa149d21b201b87 Merge: 1048be516 59464143d Author: Alan Garny Date: Thu Apr 13 19:58:54 2017 +1200 Merge branch '\''master'\'' into issue15. commit 59464143dde43ca4d288ad4d55a8598b9f496c7b Merge: 8c5521f9f af7a7bd9b Author: Alan Garny Date: Thu Apr 13 19:58:27 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit af7a7bd9bb2ecea1732967e3220e42e3ab665c84 Merge: e7e18fb64 12ad6aea5 Author: Alan Garny Date: Thu Apr 13 19:56:33 2017 +1200 Property Editor widget: now allow for navigation using the (Shift+)Tab key(s) (closes #1273). commit 12ad6aea52a939fb0b5cf0e2c4667c8b3389bb05 Author: Alan Garny Date: Thu Apr 13 18:58:48 2017 +1200 Property Editor widget: allow for navigation using the (Shift+)Tab key(s) (#1273). commit 8c5521f9f718dbf83c2807a0b1e664657dcc2fa7 Author: Alan Garny Date: Thu Apr 13 12:03:07 2017 +1200 Property Editor widget: some minor cleaning up. commit 87070fa8487bfd4b9a8b8f49fc30db80f2f35335 Merge: 569dc1315 e7e18fb64 Author: Alan Garny Date: Thu Apr 13 11:51:44 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit e7e18fb64cbde254e25260aa421e7710c283329d Merge: 51f9dd7f0 188480f45 Author: Alan Garny Date: Thu Apr 13 11:39:46 2017 +1200 Property Editor widget: now allow for navigation using the (Shift+)Tab key(s) (closes #1273). commit 51f9dd7f0dea50b66ea4d1d0535f767c0ec76df6 Merge: 55a766c45 569dc1315 Author: Alan Garny Date: Thu Apr 13 11:28:53 2017 +1200 Property Editor widget: some minor reworking of the code. commit 188480f45f035e5d065267d4d771c003354b16c8 Author: Alan Garny Date: Thu Apr 13 11:09:54 2017 +1200 Property Editor widget: allow for navigation using the (Shift+)Tab key(s) (#1273). commit 569dc131564d3b988ac65f2fadcc55c9561fda6c Merge: 69186622b 55a766c45 Author: Alan Garny Date: Thu Apr 13 10:59:26 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit 69186622b6a79157e8cd5f75a4dc87e461f2cc2b Author: Alan Garny Date: Thu Apr 13 10:58:54 2017 +1200 Property Editor widget: some minor reworking of the code. commit cb1cd9a2d0ef2ce3e519cc64656815cdbf3284f2 Merge: b1607d9bd 55a766c45 Author: David Brooks Date: Wed Apr 12 20:20:44 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit b1607d9bdc3350847d58caee798c466ea8c9ec56 Author: David Brooks Date: Wed Apr 12 20:17:57 2017 +1200 Miscellaneous code tidy. commit 0f704cdbc1456a0b4799f6e847b266aa073d87e5 Author: David Brooks Date: Wed Apr 12 20:17:24 2017 +1200 Allow Solver properties to be set from Python (#1270). commit 1048be5163046b24c741c1c7ad1be0b0757ff3e5 Merge: 51fd00c62 e97280524 Author: Alan Garny Date: Wed Apr 12 18:10:35 2017 +1200 Merge branch '\''master'\'' into issue15. commit e9728052406d85e9337ebffded1244c250aa6c8e Merge: 2bb9f55bd c61ff31c9 Author: Alan Garny Date: Wed Apr 12 18:07:20 2017 +1200 Merge remote-tracking branch '\''opencor/master'\'' commit 55a766c45f2d209db97548991cb3b5ebc9c89f4c Merge: c61ff31c9 3736421a4 Author: Alan Garny Date: Wed Apr 12 18:06:56 2017 +1200 File Handling interface: removed `isIndirectRemoteFile()` since it'\''s not being used anymore (closes #1267). commit c61ff31c993dc61b9c82f08987daa2118fc51233 Merge: dffcff3c5 2bb9f55bd Author: Alan Garny Date: Wed Apr 12 18:04:50 2017 +1200 Slight update to our downloads page following issue #1267. commit 2bb9f55bda98db453e8cb375d39802c177692dc3 Author: Alan Garny Date: Wed Apr 12 18:02:24 2017 +1200 Slight update to our downloads page following issue #1267. commit 3736421a4733af0a70dcfd7e9160fa8e65572486 Author: Alan Garny Date: Wed Apr 12 17:40:59 2017 +1200 Some slight updates to our documentation as a result of issue #1267. commit b5f196f94dd976ce2170392ed147c85ad2cd4522 Author: Alan Garny Date: Wed Apr 12 17:32:31 2017 +1200 Some minor refactoring as a result of issue #1267. commit 833ec96d21bfeb4034e7610ce4f2662e53c5b9e8 Author: Alan Garny Date: Wed Apr 12 17:13:14 2017 +1200 Some minor cleaning up. commit 88bdd214afe962eb4e82de828bf99b55f267cc69 Author: Alan Garny Date: Wed Apr 12 17:13:03 2017 +1200 Removed `isIndirectRemoteFile()` from our File Handling interface (#1267). commit 51fd00c62b94a3e410790b1658f83d85b1612f14 Author: Alan Garny Date: Wed Apr 12 14:46:40 2017 +1200 Slight update to our Zinc readme file (#15). commit 0d9bcf0868a41cb31d7618428fa097c04155e4dd Merge: 14dcd874a dffcff3c5 Author: Alan Garny Date: Wed Apr 12 13:23:46 2017 +1200 Merge branch '\''master'\'' into issue15. commit dffcff3c5c21d4fb2a53107133bb3c63f5dea78e Merge: 73a550f96 fc38ed931 Author: Alan Garny Date: Wed Apr 12 13:20:55 2017 +1200 libSBML: upgraded to version 5.15.0 (closes #1262). commit fc38ed9313ba2f265000e27f604b61515318fe6d Author: Alan Garny Date: Wed Apr 12 11:57:16 2017 +1200 libSBML: slight update to our tests (#1262). commit da7ebe1b0b9ee18fa4674d14b9684c138bc14f38 Author: Alan Garny Date: Wed Apr 12 11:53:59 2017 +1200 Updated our libSBML binaries to version 5.15.0 (#1262). commit 9a34e9dde86e3a81e1322e1b0a57f05b5c0fe8d1 Author: Alan Garny Date: Wed Apr 12 11:46:52 2017 +1200 Updated our libSBML include files (#1262). commit d2020d47f3d6dfa35edd2a51a3601104cae4ddff Author: Alan Garny Date: Wed Apr 12 11:32:06 2017 +1200 Slight update to our libSBML README file, as well as to our third-party libraries file (#1262). commit 73a550f9641f4f6fd3d7889798139073e3b4e66d Author: Alan Garny Date: Wed Apr 12 10:46:35 2017 +1200 jQuery: upgraded to version 3.2.1 (closes #1264). commit 36e53d66cc5048faa4d138b048c99282bf8877f9 Author: David Brooks Date: Tue Apr 11 18:16:45 2017 +1200 We need to specify OpenSSL libraries as well as ROOT_DIR to ensure CMake finds them (#1106). commit 9f0557336420ff5fd41f71bcf83eab8ebe70869d Merge: 051db568d 81b72ac7d Author: David Brooks Date: Tue Apr 11 16:13:59 2017 +1200 Merge branch '\''master'\'' into pythonplugin commit 81b72ac7dea305771292023f8fddccb8f0e6fd9a Author: Alan Garny Date: Fri Apr 7 15:48:11 2017 +1200 Some minor cleaning up. commit 14dcd874a4e009e22704691c2d3cd0241e28bceb Merge: dd7f83466 7b5b8c0c3 Author: Alan Garny Date: Fri Apr 7 13:10:09 2017 +1200 Merge branch '\''master'\'' into issue15. commit 7b5b8c0c3a83e29d0234d479883f3acbd7c94635 Merge: 7a4b7a032 a19b4d16a Author: Alan Garny Date: Fri Apr 7 12:58:19 2017 +1200 General: now don'\''t make our windows have a minimum size (closes #1260). commit 7a4b7a032874eace3511ead09edbfcef29f6ac38 Author: Alan Garny Date: Fri Apr 7 12:34:17 2017 +1200 Slight update to our developer'\''s documentation [ci skip]. commit a19b4d16aff56775b8ff403cd49464a666e9a93e Author: Alan Garny Date: Fri Apr 7 12:26:35 2017 +1200 Slight update to our Downloads page (#1260). commit fb3978b639389b1bbc33079d13078c014b56706d Author: Alan Garny Date: Fri Apr 7 12:24:50 2017 +1200 Make sure that our PMR Workspaces window starts with the right size (when OpenCOR is launched for the very first time) (#1260). commit dd7f8346673ceb529ed698940ab2fc7fef0a766e Author: Alan Garny Date: Fri Apr 7 00:54:15 2017 +0200 Make sure that the .ex file has a valid name on Windows (#15). commit 3a46c100fe39c40d23f15bf1228938c8b20e423a Author: Alan Garny Date: Fri Apr 7 09:52:15 2017 +1200 Some minor cleaning up. commit c4ee956a80e4031b1684bf6433e28f3d65eb7ee2 Author: Alan Garny Date: Fri Apr 7 09:39:50 2017 +1200 Some more reworking of the way we lay out our PMR and PMR Workspaces windows (#1260). commit 7a1ca7161394f53ac8ad669f4dc887e040da9feb Author: Alan Garny Date: Fri Apr 7 09:16:00 2017 +1200 Started reworking the way we lay out our PMR and PMR Workspaces windows (#1260). commit 9cbd0f360c5e1a1d6f9ef067bd114496b89020b3 Author: Alan Garny Date: Thu Apr 6 19:01:13 2017 +1200 Remove the minimum size for all of our windows (#1260). commit 2129f3e418f49252462fe80c9c731e1209e19205 Author: Alan Garny Date: Thu Apr 6 08:37:18 2017 +0200 Make sure that we can build OpenCOR+Zinc on Windows in debug mode (#15). commit 3d91e5c71ff5153fdde44d6065d47af513ad5b71 Author: Alan Garny Date: Thu Apr 6 16:13:52 2017 +1200 Now have Zinc binaries for all three platforms (#15). commit 1667350ccc72087067a1ab851396312dcc770567 Author: Alan Garny Date: Thu Apr 6 13:27:50 2017 +1200 Some minor cleaning up. commit 7246482e596cefcfa0f447f040ac08148ab15da0 Merge: f8f3b994b 6a8d2a5a2 Author: Alan Garny Date: Thu Apr 6 10:31:40 2017 +1200 Merge branch '\''master'\'' into issue15. commit f8f3b994bb93096c9a02bccc7bce02dd558c43b7 Author: Alan Garny Date: Wed Apr 5 21:27:05 2017 +1200 Merge branch '\''master'\'' into issue15. commit 6a8d2a5a2306ff549024b73404dd3ff3d2f4ed7e Merge: fbee77f0b 99f27c018 Author: Alan Garny Date: Wed Apr 5 21:24:05 2017 +1200 Renamed the `Single Cell` view to `Simulation Experiment` view (closes #1256). commit 99f27c01857dcecddb2aa96f6ef87962b9fb7517 Author: Alan Garny Date: Wed Apr 5 20:49:29 2017 +1200 Updated our downloads page (#1256). commit 0779e56d84c8b2e671344f29a05a265eff1699c3 Author: Alan Garny Date: Wed Apr 5 20:42:34 2017 +1200 Replaced/renamed singlecell/SingleCell with simulationexperiment/SimulationExperiment (#1256). commit cbfc599e4669b9c2bfc3f59add314effcd398b1f Author: Alan Garny Date: Wed Apr 5 20:02:33 2017 +1200 Updated our documentation with regards to our '\''new'\'' Simulation Experiment view (#1256). commit a5289eab2e44c1597defe921b6254bc8613b06e8 Author: Alan Garny Date: Wed Apr 5 19:49:52 2017 +1200 Renamed the `simulation/SingleCellView` folder to `simulation/SimulationExperimentView` (#1256). commit df857d831cb0102ba8ca7bef4036f2b0aeeb846f Author: Alan Garny Date: Wed Apr 5 19:44:01 2017 +1200 Some minor cleaning up. commit 129fd574c9a846659b90a3eb9cba28008da0d8ec Author: Alan Garny Date: Wed Apr 5 19:21:37 2017 +1200 Replaced "Single Cell" with "Simulation Experiment" everywhere (#1256). commit fbee77f0bb162c81d934e2ae1bfb9ced06d9a25b Merge: d445a8b06 0bbfb7e45 Author: Alan Garny Date: Wed Apr 5 18:51:14 2017 +1200 CellML Text view: the import of a CellML file is now properly converted (closes #1257). commit 0bbfb7e45263dc02c4991a601405da9f45fb263d Author: Alan Garny Date: Wed Apr 5 17:46:58 2017 +1200 Slight updates to our downloads pages (#1257). commit 708b3a0f5dec69e0300f33f4f95b32d4c967c4cb Author: Alan Garny Date: Wed Apr 5 17:43:58 2017 +1200 CellML Text view: the import of a CellML file is now always properly converted (#1257). commit d445a8b06af0b3a1a20770294b7906a216b3c946 Author: Alan Garny Date: Wed Apr 5 14:37:33 2017 +1200 Some minor cleaning up [ci skip]. commit befe214ac515da23f5bb8edf0ea00c348a586358 Author: Alan Garny Date: Tue Apr 4 18:52:11 2017 +1200 Some minor cleaning up. commit 53be83f56ab745472b2faa7c2001c029eb77c798 Author: Alan Garny Date: Tue Apr 4 18:25:57 2017 +1200 Zinc widget: now let people know when our device pixel ratio changes (#15). commit 38dec2cf1546bcb863e9246dbcbf3087f2a81e17 Author: Alan Garny Date: Tue Apr 4 16:12:12 2017 +1200 Zinc widget: handle the case where we switch from a normalDPI screen to a HiDPI screen. commit 5f06e7bee07eefae4334258e43f32c35fae21c44 Author: Alan Garny Date: Tue Apr 4 15:55:05 2017 +1200 Some minor cleaning up. commit b742f0cbf5c3b3321ef3ea0a83f9faee1a402200 Author: Alan Garny Date: Mon Apr 3 14:20:35 2017 +1200 Don'\''t use OpenGL indirect rendering on Linux anymore. This was previously needed when testing OpenCOR on our Linux virtual machine, but it was probably due to some VirtualBox settings (e.g. 3D acceleration being enabled). What is certain is that our actual Linux VM doesn’t require LIBGL_ALWAYS_INDIRECT=1 for OpenCOR to work fine (incl. for running simulations, i.e. using LLVM, which was the original reason for setting LIBGL_ALWAYS_INDIRECT to 1). commit 651348b614347bec4dd75da18d612b17d3dc759b Author: Alan Garny Date: Mon Apr 3 14:03:10 2017 +1200 Updated our Zinc binary on Linux (#15). commit e699363be3344e40074ef7656116f2d952433b3c Author: Alan Garny Date: Mon Apr 3 09:44:24 2017 +1200 Use result.hpp rather than status.hpp (#15). commit 725c4e0130d79efb7052394a2ccf0e324e1a0815 Author: Alan Garny Date: Fri Mar 31 19:29:20 2017 +1300 Some minor cleaning up (#15). commit 92b443b4e47e9f5804efaa0818bed690234e58c9 Author: Alan Garny Date: Fri Mar 31 19:09:06 2017 +1300 Now have a release Zinc binary on Windows (#15). commit b0db611cf8140d0c615a1a01dba2012d1f68abd7 Author: Alan Garny Date: Fri Mar 31 18:55:43 2017 +1300 Now have a release Zinc binary on Windows (#15). commit 08054c3f9b2788ecdb69bae12b032828ce5d3cc4 Author: Alan Garny Date: Fri Mar 31 16:49:33 2017 +1300 Some minor cleaning up (#15). commit 892b993e1be2673f17be3dd25f8dda141c2dcc5e Author: Alan Garny Date: Fri Mar 31 16:25:59 2017 +1300 Updated the Zinc header files (#15). commit 7830b0673712709cfca1ff5794d4e705e1be4a67 Author: Alan Garny Date: Fri Mar 31 16:19:13 2017 +1300 Updated our Zinc binary on macOS (#15). commit f256b813a30660d8787ba0328142be4baff6a019 Author: Alan Garny Date: Fri Mar 31 16:16:38 2017 +1300 Now try to use the '\''proper'\'' way to build Zinc (#15). commit 1694e911fa715d9c728c90d0ce7915ce6782d60f Merge: 763d90d55 a2ecd4076 Author: Alan Garny Date: Fri Mar 31 11:15:15 2017 +1300 Merge branch '\''master'\'' into issue15 commit a2ecd40766847cda1cb5c2d1eaebb12bbc944831 Author: Alan Garny Date: Fri Mar 31 11:14:53 2017 +1300 Slight update to our prerequisites page [ci skip]. This is following the release of Xcode 8.3. commit 763d90d5585b207fde89055ccbcc16b59c7dcda1 Merge: 9474c63df ad6d75ecb Author: Alan Garny Date: Fri Mar 24 15:27:23 2017 +0100 Merge branch '\''master'\'' into issue15. commit ad6d75ecb14fe86d8f7e32db102aa934dfe01486 Author: Alan Garny Date: Fri Mar 24 15:26:51 2017 +0100 New snapshot. commit 22f46a4f143c973d15e191e71505ac42a74f2a3d Merge: c78ef209b 25fa7171b Author: Alan Garny Date: Fri Mar 24 15:22:20 2017 +0100 CellML Text view: now properly process unknown elements (closes #1253). commit 25fa7171bd54e6658da15804a1f50ae2cf45568d Author: Alan Garny Date: Fri Mar 24 14:46:26 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit 38717787049f868d20432bbf97f97bf754368505 Author: Alan Garny Date: Fri Mar 24 14:39:18 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit dbc87fc4e63072255c53a4a64819f5d11b19fc1f Author: Alan Garny Date: Fri Mar 24 14:30:08 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit 2b577279a804d78a80d09fb6fac706540da4040f Author: Alan Garny Date: Fri Mar 24 13:59:53 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit 827ac2265ef85410e6fd3ba2968b6da84408cb15 Author: Alan Garny Date: Fri Mar 24 13:48:08 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit f24758bdcf7c4e4a4931a4259c3477a760e23cb5 Author: Alan Garny Date: Fri Mar 24 11:09:47 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit 1f41a904215b06f8e62d250356282bbc41752b13 Author: Alan Garny Date: Fri Mar 24 11:09:13 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit daf83c225a9bbe8fd11071cb0490145442c778a2 Author: Alan Garny Date: Fri Mar 24 10:58:09 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit d63bdee212ee664fe0efa7941271fd751ef375b3 Author: Alan Garny Date: Fri Mar 24 10:57:30 2017 +0100 CellML Text view: some work on properly processing unknown elements (#1253). commit 9474c63dff6cf17301b2e91e41cee5dfdd098cbc Author: Alan Garny Date: Thu Mar 23 15:55:54 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit b8aa55b2e6823bbde07f8152665729928d728770 Merge: 80c5fe6df c78ef209b Author: Alan Garny Date: Thu Mar 23 14:54:32 2017 +0100 Merge branch '\''master'\'' into issue15. commit c78ef209bb00c4eafb0b8d47839c3ad4abe84cfd Author: Alan Garny Date: Thu Mar 23 14:33:19 2017 +0100 Travis-CI: disabling (once again) our macOS builds... The queue seems to be back to normal (which is nice!), but they only allow one job at a time, so not good enough for us. commit 677ee12122f8057bd5107a17ec8697216a9a9ce6 Author: Alan Garny Date: Thu Mar 23 14:14:40 2017 +0100 Slight update to our third-party libraries page [ci skip]. commit ad3f38ff3931a83b63ddd1c1163ef53347951f6b Author: Alan Garny Date: Thu Mar 23 14:12:23 2017 +0100 Travis-CI: trying to re-enable macOS builds... commit 2b661b70d0c9861df4493b6a51d8eb2ee6c377a1 Author: Alan Garny Date: Thu Mar 23 14:10:32 2017 +0100 jQuery: upgraded to version 3.2.0 (closes #1252). commit fc54a1ec8a7914290fba4f78049abdb3b24d67f2 Author: Alan Garny Date: Thu Mar 23 14:08:19 2017 +0100 Some minor cleaning up [ci skip]. commit 80c5fe6dfaf160ea79257ca6a6f43ed8d301be9c Merge: 89e6d5a1a 87ce94526 Author: Alan Garny Date: Sat Mar 18 03:32:08 2017 +0100 Merge branch '\''master'\'' into issue15. commit 87ce945269504cf3516f1014b781a44ca9b40c30 Author: Alan Garny Date: Sat Mar 18 03:29:42 2017 +0100 Slight updates to the Downloads pages [ci skip]. commit a454d503b20ce02f11b3824cde12646e974f40de Merge: dc8d90662 1def742cb Author: Alan Garny Date: Sat Mar 18 03:28:38 2017 +0100 LLVM: upgraded to version 4.0.0 (closes #1248). commit 1def742cb56caee1621cbe3bccc867477c6786ba Author: Alan Garny Date: Sat Mar 18 02:52:04 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). This is needed for Travis-CI… commit f398f70e58cfd13407bf6973dbc0bc95b4464719 Author: Alan Garny Date: Sat Mar 18 02:49:28 2017 +0100 Travis-CI: well, they seem to be allowing only one macOS job at a time (while it used to be two), so disabling macOS builds... once again... :( commit a4967157c9d8fae0c0205236010f93f9e6610cca Author: Alan Garny Date: Sat Mar 18 02:40:46 2017 +0100 Travis-CI: could the macOS queue finally back to '\''normal'\''?... commit d7982d6dc3334a35d73abbf3ebace7588df6ebfb Author: Alan Garny Date: Sat Mar 18 02:38:45 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit 2d66b0cb5073039f2f804ef21337eec443f699b5 Author: Alan Garny Date: Sat Mar 18 02:31:35 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit e99c982bbbe47d9d9de2acceb6b941a28c091d07 Author: Alan Garny Date: Sat Mar 18 02:02:31 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit f1bc74173e57da88d1e101ee13beb2bac49bfa0f Author: Alan Garny Date: Sat Mar 18 00:59:24 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit 074f134d7647d6d83d64000e55a29662ffe09a2d Author: Alan Garny Date: Fri Mar 17 21:36:08 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit 61dd2aa57b5fba3bfa7407e5b1a53e6fc0a9893e Author: Alan Garny Date: Fri Mar 17 21:00:33 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit 6a289cd01a8952ab032eb42dd6c7cc1e58436efa Author: Alan Garny Date: Fri Mar 17 19:47:14 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit ea93f7928ec7049e75b404873a382009a69fc65f Author: Alan Garny Date: Fri Mar 17 19:18:01 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit f34e0b50f93ca0acb8e8ac3631b2fd5ff1f8b161 Author: Alan Garny Date: Fri Mar 17 18:36:51 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit b02a302a704f4c0a2c28ba045b723aa6468af0e7 Author: Alan Garny Date: Fri Mar 17 18:35:05 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit afd55ddbb289d37a57b86c46f7df6ea05edb8e71 Author: Alan Garny Date: Thu Mar 16 20:15:34 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit 32c5263c20d4fe2a7ffd287f5579457652250df1 Author: Alan Garny Date: Thu Mar 16 19:54:36 2017 +0100 LLVM: some work on upgrading to version 4.0.0 (#1248). commit dc8d90662d4dd29048632fc182b0248bb8a65f01 Author: Alan Garny Date: Thu Mar 16 17:55:05 2017 +0100 Make sure that our different windows have a minimum size [ci skip]. It looks better that way, especially for the PMR Workspaces window which, by default, was showing a user message with a ‘small’ default size. commit 19bc4f6d55dcf8db15a5c584d75acf5045b2e756 Author: Alan Garny Date: Thu Mar 16 17:45:54 2017 +0100 We don'\''t actually need to override sizeHint() for some of our widgets [ci skip]. commit f0b5e1b22f9d6aff1a326dc026761a048b7adac4 Author: Alan Garny Date: Thu Mar 16 17:44:51 2017 +0100 Some minor cleaning up [ci skip]. commit 2473331a1c626ec0a1a7df6be376c2b9460777ad Author: Alan Garny Date: Thu Mar 16 15:56:55 2017 +0100 Some minor cleaning up [ci skip]. commit 51b74c2d627cf0366acffdbc61ca9b0cade89664 Author: Alan Garny Date: Thu Mar 16 15:30:37 2017 +0100 Some minor cleaning up [ci skip]. commit 9bf07bb7ec28ce312046a02805eacefb5bb7a5e1 Author: Alan Garny Date: Thu Mar 16 14:17:20 2017 +0100 PMR-based windows: slight improvement to the way we show the PMR site being used [ci skip]. commit 051db568daecc79cfdb7582c09c67bfe312f40d6 Merge: 9ac513540 4f9800923 Author: David Brooks Date: Thu Mar 16 10:17:35 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 9ac513540f2d765391e56cd6f0c9d1dfd3e37c52 Author: David Brooks Date: Thu Mar 16 10:16:15 2017 +1300 Enable Python to access and modify a simulation'\''s parameters (#1087). commit ea6021d4a1b844396d57fce6dbad1acfdca4758c Author: David Brooks Date: Thu Mar 16 10:12:27 2017 +1300 Allow Python to get the size of a DataStoreVariable (#1086). commit f42918eb5dc5213c3355b1aa1ac11368b91c7e01 Author: David Brooks Date: Thu Mar 16 10:11:03 2017 +1300 Throw an exception if we can'\''t run a simulation from Python (#1087). commit fdb19fe6c069bd6f624eb6e224c86218e8228926 Author: David Brooks Date: Thu Mar 16 10:09:46 2017 +1300 Tidy up code (#1086). commit 4176521dfc003705a022308808d052b524686582 Author: David Brooks Date: Thu Mar 16 10:05:50 2017 +1300 Suppress compile warnings when using Python'\''s headers (#1085). commit 4f9800923f33d2744316e39f44235ed100af66a1 Author: Alan Garny Date: Wed Mar 15 19:34:21 2017 +0100 User Message widget: provide a size hint [ci skip]. commit d04e0ec5f5285171729bbe64d8f6ea6a27f46c50 Author: Alan Garny Date: Wed Mar 15 19:24:43 2017 +0100 PMR-based windows: make sure that the site name information gets properly translated [ci skip]. commit c43a113d5cd978c82b8c06c4a0337914d8197047 Author: Alan Garny Date: Wed Mar 15 19:12:24 2017 +0100 Some minor cleaning up [ci skip]. commit c8e1572a9759e26060ea06ef5d246c0d45bad80f Author: Alan Garny Date: Wed Mar 15 17:36:20 2017 +0100 Some minor cleaning up [ci skip]. commit b50c8b04ba3cad129f8bef8c7914c59e8f711313 Author: Alan Garny Date: Wed Mar 15 17:02:22 2017 +0100 PMR support: potentially addressed a rare (?) issue with authentification [ci skip]. Sometimes when authenticating, the web page isn’t fully loaded and we are told to close the browser. Yet, we want to wait for the page to be fully loaded (since it looks better) and we used to call QTimer::singleShot(0, SLOT(closeBrowser())), but it looks like it didn’t give (in some rare cases) time for the progress bar to update itself, meaning that the browser would never close (unless we closed it manually). To call QTimer::singleShot(1, SLOT(closeBrowser())), i.e. we have a 1ms delay, seems to be doing the trick… commit c8d2f5e298fbc7368fb198f31ae024d1913d360d Author: Alan Garny Date: Wed Mar 15 13:07:59 2017 +0100 Some minor cleaning up [ci skip]. commit 623e0f27e28dec3d34acefeff11c4ba1ff3a807a Author: Alan Garny Date: Wed Mar 15 11:07:21 2017 +0100 Slight update to our prerequisites page [ci skip]. commit e97224326115d874af34c8cf9464957d668048ef Author: Alan Garny Date: Wed Mar 15 10:10:48 2017 +0100 New snapshot. commit 89e6d5a1a09dd31fd8eed402146beb24762bb99c Author: Alan Garny Date: Wed Mar 15 09:53:23 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit de4f400d46898aaf007ead60ea2920d7e5e228f8 Author: Alan Garny Date: Tue Mar 14 17:28:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit d6074df7e636e2612b5ca101414db087e4cb7f3a Author: Alan Garny Date: Tue Mar 14 14:56:33 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 0d50cedf9f8537085f060329c25631e6484631eb Author: Alan Garny Date: Tue Mar 14 14:39:32 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 3613a8f5b12df51f024096f83e77fb56f8b2abe0 Merge: 04cb9fec8 7f9470060 Author: David Brooks Date: Tue Mar 14 20:51:42 2017 +1300 Merge branch '\''biosignalml_exceptions'\'' into pythonplugin commit 7f94700607ee61fa9309350c466d90d8889cb5f6 Author: David Brooks Date: Tue Mar 14 20:50:46 2017 +1300 Catch all exceptions that BioSignalML might throw. commit 04cb9fec889ec0c8ea4775a9b1597ac40235b59e Author: David Brooks Date: Tue Mar 14 18:03:59 2017 +1300 Fix issues with deleting and creating data store array variables (#1086). commit 259b451a3c879005bc8b2f231d22afdfb0c72790 Author: David Brooks Date: Tue Mar 14 15:23:09 2017 +1300 Return dictionaries of data store variables to Python and work on allowing Python code to set parameter values (#1086). commit c90039f42af82bf1c8f60462f98763ca2259f4ff Author: David Brooks Date: Sun Mar 12 19:40:12 2017 +1300 Add `openSimulation()` and `openRemoteSimulation()` to OpenCOR'\''s Python module (#1086). commit e3186a2b0859e2f7368ff679046699db694d7264 Author: David Brooks Date: Sun Mar 12 19:39:02 2017 +1300 Tidy code (#1086). commit 4bfc64575e723dc70fb058fcccf744dc44459a96 Author: David Brooks Date: Sun Mar 12 19:35:46 2017 +1300 Add `CentralWidget::localFileName()` to get the local file name of an open remote url. commit d2a9f8cace9e8fb55ff2cc3ffdf9f4483f01fc6f Merge: 9803de653 d86f891f9 Author: Alan Garny Date: Fri Mar 10 17:58:37 2017 +0100 Merge branch '\''master'\'' into issue15. commit d86f891f9e1ee461fbeb5fd63fe9da4f35706f8f Author: Alan Garny Date: Fri Mar 10 16:52:18 2017 +0100 PMR Workspaces window: now propagate the state of a workspace in the icon used for a folder (closes #1246). commit e5fc6452cfdca3f93260b51a43c5644f7c83e28d Author: Alan Garny Date: Fri Mar 10 16:41:51 2017 +0100 PMR Workspaces window: favour conflict over unstaged icon [ci skip]. commit 480aca42c05de7e193a0b626c8fa4842a24ab031 Author: Alan Garny Date: Fri Mar 10 16:09:27 2017 +0100 Some minor cleaning up [ci skip]. commit 9803de65348d728886497b6f327194894f54a007 Author: Alan Garny Date: Fri Mar 10 13:33:07 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit fbf5aa5491eba31b446722f8ef8bbd6219c8ef0d Author: Alan Garny Date: Fri Mar 10 09:18:51 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 4785105f32551b5fa1d3c4d9a5004e11ee38513e Author: Alan Garny Date: Fri Mar 10 09:17:25 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 142dfbccbce21d698eaf684ddbbb00efbda44119 Author: Alan Garny Date: Fri Mar 10 09:13:26 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 1dc7a88ee5a666f9d30cbc24d29599f62e06130e Author: David Brooks Date: Fri Mar 10 10:24:21 2017 +1300 Ensure other plugins can find and use the Python installed into OpenCOR (#1085). commit a54199fc91667b298d491022753c047210fb77f6 Merge: f728fbd8b 6af69acb9 Author: David Brooks Date: Fri Mar 10 11:14:38 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit c744a4b00b854e405d05f0e2301f2e44788879a0 Author: Alan Garny Date: Thu Mar 9 16:37:12 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit a4ac851c1aba7ea01f12aeea7e6fab383b05fbbf Author: Alan Garny Date: Thu Mar 9 15:54:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit ee4a2f3801216ce62f05b9fd6c192ed8d3db5920 Author: Alan Garny Date: Thu Mar 9 14:17:15 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 39588d909b7fafc18a1ef36256e835c9e0e63141 Author: Alan Garny Date: Thu Mar 9 13:44:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit d266839a1bb2af232f118bc7a5daf9ab1e042dcf Merge: e68c0f7e0 6af69acb9 Author: Alan Garny Date: Thu Mar 9 11:43:55 2017 +0100 Merge branch '\''master'\'' into issue15. commit 6af69acb91259181bf97df6690f8086c83b1ecd0 Author: Alan Garny Date: Thu Mar 9 11:43:14 2017 +0100 Some minor cleaning up [ci skip]. commit e68c0f7e04c74159b8e6180fa08550436a786d73 Author: Alan Garny Date: Thu Mar 9 10:40:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit f87ec3e703e727eb01943354908c5a8645c83753 Merge: a27ef9024 f100caac7 Author: Alan Garny Date: Wed Mar 8 16:22:29 2017 +0100 Merge branch '\''master'\'' into issue15. commit f100caac75ed60ca4684bbaee613ffe29af04f45 Author: Alan Garny Date: Wed Mar 8 16:22:07 2017 +0100 Slight update to our Downloads page [ci skip]. commit 3b15b47d316b0eebf837306f6b16046c21d3026a Author: Alan Garny Date: Wed Mar 8 16:19:30 2017 +0100 CellML Text view: now ignore `documentation` elements rather than consider them as unknown (and therefore '\''fail'\'') (closes #1245). commit 90c62af1c176d30ed60ea481d7e3d94b3a658f75 Author: Alan Garny Date: Wed Mar 8 16:18:27 2017 +0100 Some minor cleaning up. commit ac670ed9e65be76125caf0bdf1eba01b0c9f652e Author: Alan Garny Date: Wed Mar 8 16:16:44 2017 +0100 Some minor cleaning up. commit f728fbd8b9cf8a069c2f48c4466b7cbcdb3a1220 Author: David Brooks Date: Wed Mar 8 10:16:10 2017 +1300 New OS/X Python binaries with Jupyter dependencies (#1085). commit a27ef9024453c62a6df4f3e957f76614198eb285 Merge: 3a4835918 b43793fc4 Author: Alan Garny Date: Tue Mar 7 19:42:19 2017 +0100 Merge branch '\''master'\'' into issue15. commit b43793fc4fd511d0ecf6ef6e48cfdfe7758252ff Author: Alan Garny Date: Tue Mar 7 19:38:42 2017 +0100 Slight updates to our Downloads pages [ci skip]. commit b4cfd91dbbf37b1b8f3b3b27c85b357f19b1ec9a Author: Alan Garny Date: Tue Mar 7 19:32:29 2017 +0100 Linux deployment: added some libraries for OpenCOR to work on Fedora (closes #1244). commit 1616cbfe84e08dd481e927d86970de35f1fe6052 Author: Alan Garny Date: Tue Mar 7 19:31:21 2017 +0100 Some minor cleaning up [ci skip]. commit bbf6e59ec2792d83d2060f57b3ef55393cdac9ed Author: Alan Garny Date: Tue Mar 7 18:36:25 2017 +0100 PMR window: prevented exposure files from being retrieved (and listed) twice (closes #1243). commit 6f6fe3f635eabf821f4beaf42dfd1a35aa6a363d Author: Alan Garny Date: Tue Mar 7 17:45:51 2017 +0100 Some minor cleaning up. commit 8793e25469e908dd5a248582994e2665d4f5dea4 Author: Alan Garny Date: Tue Mar 7 17:40:43 2017 +0100 Some minor cleaning up. commit 8f5d9b44a192d91d15babc7c5483e66b628f51bf Author: Alan Garny Date: Tue Mar 7 16:42:19 2017 +0100 PMR window: updated the context menu (to be more in line with that of our PMR Workspaces window). commit 3a4835918392cfd88bdf0d0d3ce02ab6715ed6a9 Author: Alan Garny Date: Mon Mar 6 17:19:37 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit f82907b477504ab6607c02ec703ee63860b43807 Author: Alan Garny Date: Mon Mar 6 17:11:38 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit a08b1b2e8b53215173eb95ef3cd6320ab7763680 Author: Alan Garny Date: Mon Mar 6 16:57:34 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 8ea59094738689a52148934dce8f3143a09d10a2 Merge: bce685884 b8f3eaae4 Author: Alan Garny Date: Mon Mar 6 09:23:01 2017 +0100 Merge branch '\''master'\'' into issue15. commit b8f3eaae445f0a2d1ea789a9b0245fec5624b2db Author: Alan Garny Date: Sat Mar 4 11:19:02 2017 +0100 New snapshot. commit 343221380abd3a39e514d41e19a7935c7e9eaaf9 Author: Alan Garny Date: Sat Mar 4 10:41:23 2017 +0100 Slight updates to our Downloads pages [ci skip]. commit 6217da29f50a816a346dc378051afc7fc7cdde8b Author: Alan Garny Date: Sat Mar 4 10:34:17 2017 +0100 PMR Workspaces window: fixed a crash that used to occur when expanding a workspace by clicking on its arrow (">") when nothing else was selected (closes #1242). commit 85e74c8af8bc4019dea0b12af680f36f391300c6 Author: Alan Garny Date: Sat Mar 4 10:27:37 2017 +0100 Some minor cleaning up [ci skip]. commit b0ed419915ddd6d4a782f34a6ab838456fbd7693 Author: Alan Garny Date: Sat Mar 4 10:08:47 2017 +0100 Some minor cleaning up [ci skip]. commit e36737ae324fd36b3a7e149a326c2b412b197872 Author: Alan Garny Date: Fri Mar 3 23:55:34 2017 +0100 Some minor cleaning up [ci skip]. commit 5552cc0e4532f700dce100294bfee5470473c916 Author: Alan Garny Date: Fri Mar 3 22:22:32 2017 +0100 New snapshot. commit bce685884a99c935ffd23c81f1d57c8487af7b3e Merge: b8047b7e8 1ab13f098 Author: Alan Garny Date: Fri Mar 3 22:17:15 2017 +0100 Merge branch '\''master'\'' into issue15. commit 1ab13f098f04efa6b06fc4af1125d22ed3acfbdd Merge: 63b661788 ccf20ea04 Author: Alan Garny Date: Fri Mar 3 22:16:43 2017 +0100 libgit2: oops, to define `bool` on Windows with C++ is clearly not a good idea! commit ccf20ea04c065b2c8595f8041c64b08f8f06d5ed Author: Alan Garny Date: Fri Mar 3 21:33:50 2017 +0100 Oops, to define `bool` on Windows with C++ is clearly not a good idea! commit 63b6617880acc9296d440e7f356fbc74b61e9151 Merge: 3cdf90fe7 93ab61518 Author: Alan Garny Date: Fri Mar 3 21:28:35 2017 +0100 PMR-based windows: made it obvious which PMR site is being used (closes #1239). commit ee1434b0e47d38b6e68eeccacdbac7084c1a6e9c Author: Alan Garny Date: Fri Mar 3 21:26:37 2017 +0100 Oops, to define `bool` on Windows with C++ is clearly not a good idea! commit 3cdf90fe78a1ed8deb8d834a3c29ce615ff1a10f Author: Alan Garny Date: Fri Mar 3 21:01:54 2017 +0100 Slight update to our Downloads page [ci skip]. commit 93ab615187b2b19a2640fbb16645707b46ea6b2b Author: Alan Garny Date: Fri Mar 3 20:58:10 2017 +0100 PMR-based windows: some work on making it obvious which PMR site is being used (#1239). commit 5ffc90d93f459ca727d5ea4d564ba795ae877e2f Author: Alan Garny Date: Fri Mar 3 20:39:34 2017 +0100 Some minor cleaning up [ci skip]. commit ef292b011ede6632856d74b6aaa6fdd9d293f578 Merge: e17ae8175 acaf991f6 Author: Alan Garny Date: Fri Mar 3 20:06:53 2017 +0100 PMR Workspaces window: can now create a workspace from a non-empty (and non-Git) folder (closes #1237). commit acaf991f670a14c1d139a508691967ca1fdcb790 Author: Alan Garny Date: Fri Mar 3 19:28:19 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit b8047b7e809bcb18f42b441d5c2bbd47cbc79009 Merge: d51c66a27 e17ae8175 Author: Alan Garny Date: Fri Mar 3 19:05:35 2017 +0100 Merge branch '\''master'\'' into issue15. commit d51c66a277e4b3acf82b5e70c5c78236befade2d Author: Alan Garny Date: Fri Mar 3 19:05:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 462b0654236adba809508092b12219a696b00caa Author: Alan Garny Date: Fri Mar 3 18:57:49 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit b595daec75a34e3722f421371c4a19f76bdf2079 Author: Alan Garny Date: Fri Mar 3 18:57:08 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit df6a2c32b8351cf4d10692bbd1fa43baa454df05 Author: Alan Garny Date: Fri Mar 3 17:54:33 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit 01a0f032f9907614f6d26af14980d2cb469db3e8 Author: Alan Garny Date: Fri Mar 3 17:37:46 2017 +0100 Some minor cleaning up. commit 9b40c872cc4e1b6d5461210d4c6e2295b6c40be2 Author: Alan Garny Date: Fri Mar 3 17:27:55 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit 5d37472fcd606f5fea0e662d6ba4f45aa95dc35e Author: Alan Garny Date: Fri Mar 3 16:40:11 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty (and non-Git) folder (#1237). commit e17ae8175341d2b38faf98d19fbfce7ab224daf7 Author: Alan Garny Date: Fri Mar 3 15:32:22 2017 +0100 PMR Workspaces window: fixed a small problem with synchronising potentially resulting in a segmentation fault on Linux (closes #1236). commit e1a819cb9388f1abc0b74d5b7865709c8a974b8a Author: Alan Garny Date: Fri Mar 3 15:22:53 2017 +0100 Some minor cleaning up. commit 842d5cd14f9f7e7d029bdbccd9c182dec4633334 Author: Alan Garny Date: Fri Mar 3 13:37:36 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). Mainly to keep track of what has been tried… commit ca138c5f09240f14255daf25459d4db3c5521e30 Author: David Brooks Date: Fri Mar 3 15:22:53 2017 +1300 Cleanly shutdown our Jupyter kernel (#1085). commit ffada0ab1c7bd5f389e3c84600562a49fc911563 Author: Alan Garny Date: Thu Mar 2 17:53:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 007c46bb9b66a40eb5de99bc7e63d126c501da8f Author: Alan Garny Date: Thu Mar 2 17:44:34 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 332a3c58c58181c252dd2f1dcd2ed262f9e97585 Author: Alan Garny Date: Thu Mar 2 15:50:42 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 70d44e54a559c9513827946ec61c3ea2df576543 Author: Alan Garny Date: Thu Mar 2 15:38:13 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit d9e90742c7cf0063ef3af26fa8beb6dd45c02a87 Author: Alan Garny Date: Thu Mar 2 15:05:54 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 9cec2ba6b01f61b399eede3b3fec06d0f8b15712 Author: Alan Garny Date: Thu Mar 2 14:59:01 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 3c368446084c1394946b4cb3217205d69e20b8ce Author: Alan Garny Date: Thu Mar 2 14:57:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit a1a6e33125f152135ac1819a575e724c8872ea5f Author: Alan Garny Date: Thu Mar 2 13:47:03 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 1524263fe6d82d3b470f79660dfbd304ce0e5ecc Author: Alan Garny Date: Thu Mar 2 13:12:07 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit a388fe88bd1c0a757b173eacbd914f88e46af88c Author: Alan Garny Date: Thu Mar 2 11:39:44 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit ccb3184359fe7e18f346f752e871e799906b6422 Author: Alan Garny Date: Thu Mar 2 11:30:56 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 4dd89b4437245b12a29e69e811de2df04d23bc56 Author: Alan Garny Date: Thu Mar 2 11:17:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit eb72274c7fcf9edaec651f537bf2d3fb689d59d3 Author: Alan Garny Date: Thu Mar 2 10:44:45 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 32daa04cb369026138ea42279cce18ca7414127a Author: Alan Garny Date: Thu Mar 2 10:41:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 4da27feddd911210e29fb7f2fff4db22509237fd Author: Alan Garny Date: Thu Mar 2 10:35:19 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 2cba9d2c93b49ea9c7b06dfa50f6323a189c94b7 Author: Alan Garny Date: Thu Mar 2 10:12:59 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 5be305750f6f3446656d0a471cc48bcb87c634f8 Merge: 35b2de478 daf8b6943 Author: Alan Garny Date: Thu Mar 2 10:09:35 2017 +0100 Merge branch '\''master'\'' into issue15. commit daf8b6943918af2c90dfa3983eb48bcc98e24ec4 Author: Alan Garny Date: Thu Mar 2 10:09:23 2017 +0100 Some minor cleaning up [ci skip]. commit 35b2de478d3248a3f66897da435331833aa83eca Author: Alan Garny Date: Thu Mar 2 10:08:52 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 26c0e0d090c268844aab48f42838abf8187a83a1 Author: Alan Garny Date: Wed Mar 1 20:33:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 9be0545e6ac58fe1ed9c4fbbe77210305ab1525d Author: Alan Garny Date: Wed Mar 1 20:05:41 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 54adb01e8399dcdb4e7bd538489fd81afd86615d Merge: 5bf86666b 521cbf9f1 Author: Alan Garny Date: Wed Mar 1 19:50:37 2017 +0100 Merge branch '\''master'\'' into issue15. commit 521cbf9f1581e586ca57dd5bc1915d8df595590b Author: Alan Garny Date: Wed Mar 1 19:45:59 2017 +0100 PMR Workspaces window: have a default size for our authentication dialog [ci skip]. commit 4ba0802c3b32e58d011be34dca515fd0b0b21f97 Author: Alan Garny Date: Wed Mar 1 19:29:37 2017 +0100 Oops, I went a bit too far in commit 05acd81! commit 05acd81325af7adf77f0762c9fb974203f6553c6 Author: Alan Garny Date: Wed Mar 1 19:17:42 2017 +0100 Some minor cleaning up. commit 5bf86666b49c12a1a9fa527d8d0f7776a95bdefb Author: Alan Garny Date: Wed Mar 1 18:54:29 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 470c11d072b030dad98a47e88b6e1e8f485a2e73 Merge: 6facd130d 975a8fad8 Author: Alan Garny Date: Wed Mar 1 18:28:02 2017 +0100 Merge branch '\''master'\'' into issue15. commit 975a8fad858e919a4b154593764792df77aa7ec0 Author: Alan Garny Date: Wed Mar 1 18:27:48 2017 +0100 Slight updates to our Downloads pages [ci skip]. commit 6facd130d1b9bcb1d41b13c2170f7b8ccb1929fb Merge: b3388b57b 1e5385e85 Author: Alan Garny Date: Wed Mar 1 18:18:46 2017 +0100 Merge branch '\''master'\'' into issue15. commit 1e5385e857b0b4b37523f2cc539c4b92ce084901 Author: Alan Garny Date: Wed Mar 1 18:15:12 2017 +0100 Fixed a small regression issue (that got introduced between the 2017-02-10 and 2017-02-24 snapshots) that prevented the application icon from being set on Linux (closes #1235). commit 5fb62b56951b4055c2d77c314131227af88096c2 Author: Alan Garny Date: Wed Mar 1 17:33:17 2017 +0100 Some minor cleaning up [ci skip]. commit 2495fa6ebee204d734ef8b19b0e8cbab602fc18c Author: Alan Garny Date: Wed Mar 1 17:19:56 2017 +0100 LLVM: found a way around the use of LLVM_DEFINITIONS for LLVM-related plugins. commit 25ca9ff885fbab61a11d11dcabd664a02828e37d Author: Alan Garny Date: Wed Mar 1 16:12:30 2017 +0100 Some minor cleaning up [ci skip]. commit 762389f27de30e5415b148d66d29926dc5054d52 Author: Alan Garny Date: Wed Mar 1 13:38:53 2017 +0100 Qwt: found a way around the use of QWT_DEFINITIONS for Qwt-related plugins. commit 5e6cbe4cb29c2dec85358ff1a2efee69eb215718 Author: Alan Garny Date: Wed Mar 1 13:28:01 2017 +0100 Some minor cleaning up. commit 29bdd4d3453907253213e47a7131dba47392ffda Author: Alan Garny Date: Wed Mar 1 11:19:47 2017 +0100 Some minor cleaning up [ci skip]. commit b3388b57b5fdbfdc90c7d639212bc213c4c01e4b Merge: 9f3698ca9 464801a87 Author: Alan Garny Date: Tue Feb 28 20:22:42 2017 +0100 Merge branch '\''master'\'' into issue15. commit 464801a8759026d66cc982837fb0a0c0bb3117a3 Author: Alan Garny Date: Tue Feb 28 20:22:00 2017 +0100 Some minor cleaning up. commit 9f3698ca93c5dbaa08d0b06f5239c375bfc94d3d Merge: 665381e20 a14d9746a Author: Alan Garny Date: Tue Feb 28 20:03:03 2017 +0100 Merge branch '\''master'\'' into issue15. commit a14d9746a4350364620a2904be8fb0ad0904db93 Author: Alan Garny Date: Tue Feb 28 20:02:47 2017 +0100 Make sure that all of our windows have a minimum suggested default size [ci skip]. Commit 2515a964c759df2ef9c88250d67f71e9bd7d6051 was doing at too high a level. Instead, we should do it in the widgets plugins (e.g. WebViewerWidget rather than HelpWindow or WebBrowserWindow). commit 665381e20644f9dc8802d5bcd7a7fdc55e42cd3f Merge: e731feb6e 3874bd772 Author: Alan Garny Date: Tue Feb 28 19:45:39 2017 +0100 Merge branch '\''master'\'' into issue15. commit 3874bd7724889966e648fffe87b3c7e6eb37a01b Author: Alan Garny Date: Tue Feb 28 19:45:21 2017 +0100 Some minor cleaning up. commit e731feb6e7d54d7d978688a93b4afa5f30735098 Author: Alan Garny Date: Tue Feb 28 18:02:06 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit f05a93fbe1db11ff1f94d3a634bd7d6155a206e2 Author: Alan Garny Date: Tue Feb 28 17:14:53 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 90183abf7f7d93725434a3f96d122ecee5b9cb8a Author: Alan Garny Date: Tue Feb 28 16:26:13 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit e2369284c8a465bd4d3fee9308e7a5091722d20a Author: Alan Garny Date: Tue Feb 28 16:24:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit efa380425493e811fb09e44be1b08e11b1fe9fe8 Merge: 3ee9a3bdb 2515a964c Author: Alan Garny Date: Tue Feb 28 14:39:52 2017 +0100 Merge branch '\''master'\'' into issue15. commit 2515a964c759df2ef9c88250d67f71e9bd7d6051 Author: Alan Garny Date: Tue Feb 28 14:39:36 2017 +0100 Make sure that all of our windows have a minimum suggested default size [ci skip]. commit 3ee9a3bdb54a9e366efd0f2c6269cecc129bb733 Author: Alan Garny Date: Tue Feb 28 14:31:11 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit db04f81dbbb3778fbe7d4f98503e539a58b539e2 Author: Alan Garny Date: Tue Feb 28 13:51:27 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit eea307b788cbef487cac4403213c16634be4d6d5 Author: Alan Garny Date: Tue Feb 28 13:33:09 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit e7d4a8bba4f5e9bf6e9aa6e1fdfb1a027fbe9897 Author: Alan Garny Date: Tue Feb 28 10:51:22 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 0a968695522418832b5bec84060d4b6261c358a1 Author: Alan Garny Date: Tue Feb 28 10:51:06 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 02cd13818a5aa198d60878db4ae8a90e223696db Merge: 7cae0a59a b42e7e4ca Author: David Brooks Date: Tue Feb 28 19:18:02 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 7cae0a59ab63f7aa8dacb2792480e9fb723ef1a0 Author: David Brooks Date: Tue Feb 28 19:16:22 2017 +1300 Set the location of our DLLs under Windows so that they are found (#1085). commit 0e02f9fb32849a0d9f73e0954ec7cdc0ad72d0df Author: David Brooks Date: Tue Feb 28 19:15:36 2017 +1300 Run a Python module using `OpenCOR -c Python::MODULE_NAME` (#1085). commit e49eaff0f2595b9738221b7f084129c16597b7ef Author: David Brooks Date: Tue Feb 28 19:11:27 2017 +1300 Provide a user with scripts to install Python packages, etc. and remove `pip` as a plugin command (#1085). If we run pip as `OpenCOR -c Python::pip` then pip tries to run OpenCOR as a sub-process rather than the Python that started pip. commit 15c451817024108bf644734d5e6a6c63767497d6 Author: David Brooks Date: Tue Feb 28 19:01:25 2017 +1300 Bundle SQLite3 shared library with Python (#1085). commit 1e16ec6d94b151748e51362fe82c5688171c8653 Author: David Brooks Date: Tue Feb 28 18:54:15 2017 +1300 Install and use SQLite3 library under Windows (#1085). commit a0750cb8e46a6ffb83e929d429eccf291a64afc5 Author: David Brooks Date: Tue Feb 28 18:47:42 2017 +1300 Add dependency rules for copying OpenCOR.com in a Windows'\'' build #1106). commit eefa9e79c00b761cda464faf4083fb57209bf6f4 Author: Alan Garny Date: Mon Feb 27 18:10:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 7af8cd29dac5cbc4bb472f86b7c85e75805f777d Author: Alan Garny Date: Mon Feb 27 15:57:17 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 95f9ac5bfd3e90991346bf67c370646dcbbe59a8 Merge: af1f91454 b42e7e4ca Author: Alan Garny Date: Mon Feb 27 15:56:28 2017 +0100 Merge branch '\''master'\'' into issue15. commit b42e7e4cabc7c0715eab64495409be6c334c273a Author: Alan Garny Date: Mon Feb 27 15:56:11 2017 +0100 Cleaned up some of our reStructured files [ci skip]. Indeed, to render them using http://rst.ninjs.org/ gave some errors even though they were rendering fine in GitHub. commit af1f91454746b7bcb9cac1a0fdfaa6b40b2f0554 Author: Alan Garny Date: Mon Feb 27 15:43:11 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit 05da295e6eba745e8233e9f516aa37104796cbf1 Author: Alan Garny Date: Mon Feb 27 15:22:27 2017 +0100 Some work on adding support for OpenCMISS-Zinc (#15). commit d1c2d249088e64bc625bce8bbb16d01d820973d6 Author: Alan Garny Date: Mon Feb 27 14:10:34 2017 +0100 diff-match-patch: some minor cleaning up and explanations [ci skip]. commit 9ea8351ba0ef773081cd840a5f288372685b0b09 Author: Alan Garny Date: Mon Feb 27 11:45:30 2017 +0100 Some minor cleaning up [ci skip]. commit 9706813d3eca0ca65dadb5e8d86b144e31938b24 Author: David Brooks Date: Mon Feb 27 15:50:40 2017 +1300 Remove debugging (#1085). commit 4ae4eec20d5414902f091c16d768ddad15e57816 Author: David Brooks Date: Mon Feb 27 15:50:11 2017 +1300 Tidy up EventLoopInterface code (#1085). commit c132ff3b36cde4890e8aca7dadfa841642d1ca98 Author: David Brooks Date: Mon Feb 27 15:47:57 2017 +1300 Window'\''s CLI build needs to know about EventLoopInterface (#1085). commit b72edc54e66f19c45969dda1bc6715dd1e83fb38 Merge: 8c00912a8 5c684b0f2 Author: David Brooks Date: Sun Feb 26 09:57:45 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit 5c684b0f227ebdd00d0347b6dd67088ac40f71e0 Author: David Brooks Date: Sun Feb 26 09:57:12 2017 +1300 Use a custom target when copying external binaries in CMake (#1106). commit 8c00912a8b637f984441e018221fab429242505c Author: David Brooks Date: Sun Feb 26 09:55:27 2017 +1300 Update external package archives for linux (#1106). commit d8e23309daf1400a2d6a0c42f7bb7d46a155dfcc Merge: 9c5d4c88e 5e1bdebf9 Author: David Brooks Date: Sat Feb 25 17:36:29 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit 5e1bdebf911770a46ccd08cdcfb9a30552066588 Author: David Brooks Date: Sat Feb 25 17:35:33 2017 +1300 External libraries weren'\''t being linked to targets under Linux... (#1106). commit c1b204478f3dc0fb2aa151c369873cc79b3125cd Author: David Brooks Date: Fri Feb 24 21:13:20 2017 +1300 Extend `COPY_FILE_TO_BUILD_DIR` to optionally specify if copy should be before the target is built (#1106). commit e1d6f5cb63cf2a97c288dc14ec8ddf5e54d2cbdf Author: Alan Garny Date: Fri Feb 24 18:54:43 2017 +0100 PMR Workspaces window: slight improvement to the way things get resized in our synchronisation dialog [ci skip]. commit 69b5ed7da0c4ac9bde6555cd740a7b956dd146bc Author: Alan Garny Date: Fri Feb 24 18:03:46 2017 +0100 Some minor cleaning up [ci skip]. commit 697310190e8e81e99872e376a3cdd98970fe87d9 Author: Alan Garny Date: Fri Feb 24 16:16:37 2017 +0100 New snapshot. commit b5893a355deb054e82b79222d3b2ce5ebb48902a Author: Alan Garny Date: Fri Feb 24 16:15:11 2017 +0100 PMR Workspaces window: slight improvement to our rendering of diffs [ci skip]. commit 100066e6b86b432697153b5622ae8e436ee9b5b8 Author: Alan Garny Date: Fri Feb 24 15:08:06 2017 +0100 PMR Workspaces window: slight improvements to our colour scheme for the diff [ci skip]. commit f49559847a7536fa74f52c14738e2c11b09efe4e Author: Alan Garny Date: Fri Feb 24 14:26:50 2017 +0100 PMR Workspaces window: make sure that the CellML Text based diff works fine on Windows [ci skip]. commit 295dd3d7d2c9d4b8d74559bc28638a8eb57bb059 Author: Alan Garny Date: Fri Feb 24 14:15:55 2017 +0100 Revert "New snapshot." This reverts commit ebac51836d383e7eb35b07154eb48cde1214ce9f. commit ebac51836d383e7eb35b07154eb48cde1214ce9f Author: Alan Garny Date: Fri Feb 24 11:32:20 2017 +0100 New snapshot. commit cde07670d92ade8e8dc7cc5cc776b4b971718707 Merge: 4dac8a5a3 35b60bbb9 Author: Alan Garny Date: Fri Feb 24 11:05:53 2017 +0100 WebViewer widget based plugins: fixed a small ‘regression’ issue with the default context menu always being shown (closes #1233). commit 4dac8a5a37ee207473bf55ab3082eff61e7c6b2c Author: Alan Garny Date: Fri Feb 24 10:55:15 2017 +0100 PMR Workspaces window: use a better colour scheme for the diff [ci skip]. commit 35b60bbb9c695ab235267c8ba54539392058a324 Author: Alan Garny Date: Fri Feb 24 10:33:47 2017 +0100 WebViewer widget based plugins: fixed a small ‘regression’ issue with the default context menu always being shown (closes #1233). commit 5e9a9d5815483bc0ffd957bd5472aebb541ba8b6 Author: Alan Garny Date: Fri Feb 24 09:19:25 2017 +0100 Some minor cleaning up [ci skip]. commit 9c5d4c88e441b0c59fa71e470d7d25f0caf9af3f Author: David Brooks Date: Fri Feb 24 21:15:05 2017 +1300 Find SQLite3 under Linux (#1085), commit d5ef9ae340d82912d5309eaf3bc57543fa656f0e Author: David Brooks Date: Fri Feb 24 21:13:20 2017 +1300 Extend `COPY_FILE_TO_BUILD_DIR` to optionally specify if copy should be before the target is built (#1106). commit 09c64041a3f5f95dacf661cd162373894ef2d71c Author: David Brooks Date: Fri Feb 24 16:25:24 2017 +1300 Use new name for Python runtime library directory (#1085). commit 7d9af03fd8d1ddeac35d6e0cb2322670fa761c26 Merge: 7a93154a1 ad4536c30 Author: David Brooks Date: Fri Feb 24 16:10:32 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit ad4536c3081ef95e4ebd3b5828601921a599ed0f Merge: 3dee814ef 21c2308e6 Author: David Brooks Date: Fri Feb 24 16:02:53 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 3dee814ef916d37000f46a88e5fa90c298c09cd4 Author: David Brooks Date: Fri Feb 24 16:01:18 2017 +1300 Build latest version under MacOS and Linux (#1085). commit d22ededfa6e731a0b7f7d30e2d5fa356506e1c65 Author: David Brooks Date: Fri Feb 24 16:00:42 2017 +1300 Copy and fixup external binaries *before* plugin build and link to the destination copy (#1106). commit bcae1ca0bafb0114c2e5a3cc8521d89f6b8c1e9d Author: David Brooks Date: Fri Feb 24 15:58:40 2017 +1300 Test was reversed in commit 60dbe7b... (#1085). commit 250fa36887dda264146b83690ef6e0c7f37217ed Author: David Brooks Date: Fri Feb 24 15:57:45 2017 +1300 OpenSSL is now in a plugin so no need to deploy system version (#1101). commit 7832a95e3f67f407e3c21e1959a6ea60073a64d2 Author: David Brooks Date: Fri Feb 24 10:19:20 2017 +1300 Fix Linux build of Python plugin (#1085). commit 7a93154a10712e3720818f33b5bc2368abb31d62 Merge: 77fbb02cc 611a085b9 Author: David Brooks Date: Fri Feb 24 09:04:58 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit 611a085b9b4d2c1dd8e8d6d998ed33cdad4207f9 Author: David Brooks Date: Fri Feb 24 08:57:39 2017 +1300 We were installing numpy twice... (#1085). commit 77fbb02cc571d5b71b0d62798d37c058b5825784 Author: David Brooks Date: Fri Feb 24 08:51:06 2017 +1300 Update README (#1085). commit 042bfb2be00c60da95d0da8bc1b8ecd446ddae3a Author: David Brooks Date: Fri Feb 24 08:49:10 2017 +1300 A Jupyter kernel specification for OpenCOR (#1085). commit f72ffe1a632008f5582093626f56b8a688d76da9 Author: David Brooks Date: Fri Feb 24 08:48:37 2017 +1300 Patch IPython kernel to work with PythonQt (#1085). commit edcc47a18d00be211b6b488ff0bc43b322726f21 Author: David Brooks Date: Fri Feb 24 08:27:06 2017 +1300 Upgrade numpy to version 1.12.0 (#1085). commit f8f57f922f55f318a0e70482b7d43ab7e0c7650d Author: David Brooks Date: Fri Feb 24 08:26:35 2017 +1300 Get Python plugin running under Windows (#1085). Also tidy up CMake code. commit 21c2308e620df858d64823ecf28df08310d94646 Author: Alan Garny Date: Thu Feb 23 19:04:56 2017 +0100 CellML Text view: fixed a small problem with trying to comment out an empty line moving the caret to the next line (closes #1232). commit b060463a4fccb2760c9e33582be6284487ab2479 Merge: 81e87713f 5e4614577 Author: Alan Garny Date: Thu Feb 23 18:43:03 2017 +0100 PMR Workspaces window: now offer a way to see the differences in the files that are to be synchronised with PMR (closes #1229). commit 5e4614577667bb5afe87c197fef90b7ae939adb5 Author: Alan Garny Date: Thu Feb 23 18:07:24 2017 +0100 Travis CI: give up on macOS builds for now. Right now, their macOS has more than 1,000 jobs! This is ridiculous. commit e69f2c3b4d19a95ad32a09b8fa275ad7d3c16307 Author: Alan Garny Date: Thu Feb 23 17:59:16 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit f036c334229402b28aefbbbe86a581d2386c5abf Author: Alan Garny Date: Thu Feb 23 17:44:48 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 0c85e9f231940fbd4c94c6b17c7e3fa0999232d2 Author: Alan Garny Date: Thu Feb 23 17:42:39 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit e73c75961e54c6c22510e95cd56a6bcd165fc9af Author: Alan Garny Date: Thu Feb 23 16:58:22 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 1b6282fdd76c29b3b76068fd32ee5d52424ec727 Author: Alan Garny Date: Thu Feb 23 16:55:43 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 35c1c9a601a45e314bd46396ab439032431e61de Author: Alan Garny Date: Thu Feb 23 16:34:50 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 2a18fea27d4a5fc211a91a4bf239fd40b960d789 Author: Alan Garny Date: Thu Feb 23 15:32:31 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit fc93a52f26c2ba26fd5c1b1a810fa626453c073a Author: Alan Garny Date: Thu Feb 23 14:55:51 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 4880159edbf936fc460dc1cae21bb97247595a96 Merge: 70be67cce 81e87713f Author: Alan Garny Date: Thu Feb 23 12:39:55 2017 +0100 Merge branch '\''master'\'' into issue1229. commit 81e87713f33fda1d9fdeeb2b003c0fe11e14f103 Author: Alan Garny Date: Thu Feb 23 12:34:53 2017 +0100 Slight update to our developer documentation [ci skip]. commit 70be67cce16c4e4f97acf7ee4ca98d1c0f088d62 Author: Alan Garny Date: Thu Feb 23 11:48:40 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 0682a2d97962149a03dee96531ff19ed26672022 Author: Alan Garny Date: Thu Feb 23 11:08:34 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 7b340c6c309ebb57bd3302519826aab7d0207cdb Merge: 5c1f2e9c2 d08457b97 Author: Alan Garny Date: Thu Feb 23 10:15:13 2017 +0100 Merge branch '\''master'\'' into issue1229. commit d08457b97c04969fd37cc00ddf3ea36951cfc055 Author: Alan Garny Date: Thu Feb 23 10:06:12 2017 +0100 CellML Text view: unknown elements (e.g. `int`) now result in an error during conversion to the CellML Text format (closes #1230). commit fd8ef4b4360f52ac210e2879ed0f699b6ec7e34a Author: Alan Garny Date: Thu Feb 23 10:01:28 2017 +0100 CellML Text view: some work towards getting unknown elements (e.g. `int`) to result in an error (#1230). commit 60dbe7bf378c64e9a7596cbd9d23ed84be3fbbb9 Author: David Brooks Date: Thu Feb 23 15:34:47 2017 +1300 Newly built external project files weren'\''t always copied (#1106). Only do a direct copy if the file exists and the plugin doesn'\''t depend on any targets. commit 12e0ccbe99ea987a39a4fcbac02e03b2b7e6b89f Author: David Brooks Date: Thu Feb 23 14:04:10 2017 +1300 Update Windows builds of external packages (#1106). commit bc4a573cab89cbef5ea5f2afb4b21c8320215b70 Author: David Brooks Date: Thu Feb 23 13:56:43 2017 +1300 Tidy up CMake script (#1106). commit b0a9dec20a6f39e124ce5184b22108547daeb4c1 Author: David Brooks Date: Thu Feb 23 13:52:47 2017 +1300 Use correct OpenSSL library names in a Windows debug build (#1101). commit 5c1f2e9c2f85f46f896dad1d62d59bc2934f162c Author: Alan Garny Date: Wed Feb 22 19:37:00 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 1c43360a3d8651d34033c232e4eab87555d3cd7e Author: Alan Garny Date: Wed Feb 22 18:57:55 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 27bc8b1e888f1bfdaf0653db7b7ae463abd8209f Author: Alan Garny Date: Wed Feb 22 18:54:13 2017 +0100 Some minor cleaning up. commit acaa7801266970dc3f56a4bf1159cb61bfefc4ef Author: Alan Garny Date: Wed Feb 22 18:15:10 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit deb0c9608caf42b46498e03da461200969e9654f Author: Alan Garny Date: Wed Feb 22 18:04:07 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 9136ce0f151fcb7892d7673d923d14861b62180a Author: Alan Garny Date: Wed Feb 22 17:40:43 2017 +0100 Some minor cleaning up. commit 9b3a3704fbee13b509317d895e8010c108a72f04 Author: Alan Garny Date: Wed Feb 22 16:45:36 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit de97d0b7a8dadfbaaaa93d2699e21374de022eff Author: Alan Garny Date: Wed Feb 22 15:42:00 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit e8e37e4bb65396dd8189cf04534ff2c3903c8e96 Author: Alan Garny Date: Wed Feb 22 15:25:54 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 7d6c9e3c2b04aa87f71c0812b7e7c2c6a07b169d Author: Alan Garny Date: Wed Feb 22 14:42:31 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 63b789c9607c6ca2b99a0e7367caa9964cc4c751 Author: Alan Garny Date: Wed Feb 22 13:52:06 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit c3d17f07aef5053eace2f8d09fac54ea3b2498a3 Author: Alan Garny Date: Wed Feb 22 11:51:22 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 66aa1c37554432eb76720ca8048a138a491f3d50 Author: Alan Garny Date: Wed Feb 22 11:18:33 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit dae2a8fb6fc76628542840d75faa2472aa22f18a Author: Alan Garny Date: Wed Feb 22 10:44:36 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 15c38420f4398379b1e188e8aa104b590e2200ba Author: Alan Garny Date: Wed Feb 22 10:27:08 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 47a42c5d8362388de4a97b55c3c7ea438ba27424 Author: Alan Garny Date: Wed Feb 22 10:02:48 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit ee782292958109f1169d01b200c9e56fd7154277 Author: Alan Garny Date: Tue Feb 21 20:16:42 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 44b2e12c59cc86fa6c1f51ebfd6f1c5242ee98cc Author: Alan Garny Date: Tue Feb 21 19:46:21 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 8381b05a276fce1f73de50fb326e7c6d83933e56 Author: Alan Garny Date: Tue Feb 21 19:01:35 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 687f85f3b19f6b5c1aa697950d6253481d834e82 Author: Alan Garny Date: Tue Feb 21 18:58:09 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR (#1229). commit 4a248f4f5e38063ff4ad6081101c1f8f9dc52f50 Author: Alan Garny Date: Tue Feb 21 18:56:11 2017 +0100 Some minor cleaning up [ci skip]. commit e6e8092c0d1565b7f773f01df0d06f3e00ee4bff Author: Alan Garny Date: Tue Feb 21 18:25:56 2017 +0100 Some minor cleaning up [ci skip]. commit 468acde3f27d4ddec1a34340e6e826aa462c17b3 Merge: c06659cba 313cc1392 Author: Alan Garny Date: Tue Feb 21 11:17:12 2017 +0100 QScintilla: upgraded to version 2.10 (closes #1227). commit 313cc1392736f29a4881195ce98aa099fbfc3301 Author: Alan Garny Date: Tue Feb 21 10:43:13 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit 39455ae949d9a3d6eeb7d43b875c5ab9f0707e11 Author: Alan Garny Date: Tue Feb 21 10:41:38 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit db96a8e43a4a04aaeb1fbcf1713b1107469a7b27 Author: Alan Garny Date: Tue Feb 21 10:32:39 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit 13618ca384baf96e4603ccb7ac5eb9a7ade6ba7b Author: Alan Garny Date: Tue Feb 21 10:19:19 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit ff18d0c09284e4240efe8aeae4f35fde4db71b80 Merge: c98c76540 c06659cba Author: Alan Garny Date: Tue Feb 21 08:25:53 2017 +0100 Merge branch '\''master'\'' into issue1227. commit c98c76540a2967217ef1243ddbff3513fa3049b3 Author: Alan Garny Date: Tue Feb 21 08:23:11 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit 1d769e68bdc9c0dd5e441b4aef55a0795754e20e Author: David Brooks Date: Tue Feb 21 14:49:50 2017 +1300 Use appropriate quiet option for `make` on the different platforms (#1101). commit c0797761debbde3ac1ad19286612747f92b1f749 Author: David Brooks Date: Tue Feb 21 14:46:17 2017 +1300 Use `TARGET` instead of `DEPENDENCY` to specify the target when creating a package (#1106). commit cc9ff1def254675e9609e1da4a25acfc1bdcdb02 Author: David Brooks Date: Tue Feb 21 14:43:10 2017 +1300 Set a plugin'\''s build dependencies as part of ADD_PLUGIN (#1106). commit 2e10a97d204bd3171e47466336aedadd64645529 Author: David Brooks Date: Tue Feb 21 10:21:20 2017 +1300 Tidy up CMake files (#1106). commit 786bd243f2592a085230a64cfb9c089ee98feaa9 Author: David Brooks Date: Tue Feb 21 09:25:30 2017 +1300 Windows needs to access wrapped classes (#1085). commit c4f9cfdc9884d83eb10caa49534f72df952fa1db Author: David Brooks Date: Tue Feb 21 09:24:38 2017 +1300 We need to export wrapped classes for Windows (#1085). commit 59485a77cdba36313128c11956d2bdd60e92e2b0 Author: David Brooks Date: Tue Feb 21 09:10:11 2017 +1300 Specify base directory for external projects (1106). This helps prevent path names becoming too long during Windows'\'' builds. commit c06659cba5c4a465a16faaa9662a85a4f52f55cf Merge: c2e2537c4 7aa71de24 Author: Alan Garny Date: Mon Feb 20 18:01:44 2017 +0100 PMR Workspaces window (closes #1212 and closes #1213). commit 6e8d7023eab5cd358fc96529c484a1d1cb6ab59d Author: Alan Garny Date: Mon Feb 20 17:37:44 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit 396a66b25f2d692959b58a3571acafde0d443dc8 Author: Alan Garny Date: Mon Feb 20 17:35:20 2017 +0100 QScintilla: some work on upgrading to version 2.10 (#1227). commit 7aa71de245eaf26fb53d5fa51ed7b64c0865cdda Author: Alan Garny Date: Mon Feb 20 16:58:43 2017 +0100 Travis CI: replaced an (apparently) obsolete package with another on Linux. This strange because I had been using that ‘obsolete’ package for months if not years. Oh well… commit 9de53ed35b2f5844f5a505536f361507da97a54e Author: Alan Garny Date: Mon Feb 20 16:24:23 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 683924eba066274da5255cfeec9d1187d1bcd0c6 Author: Alan Garny Date: Mon Feb 20 16:00:54 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 38d117e32e1e6758886dcc992ca22bbc730b7b74 Author: Alan Garny Date: Mon Feb 20 15:55:27 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 475a130347bb9f09e0c0a5288f6479ec4e6d744b Author: Alan Garny Date: Mon Feb 20 15:48:06 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 2473e103154e479b23d63b0c891c5ba6e2276565 Author: Alan Garny Date: Mon Feb 20 15:00:55 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit c6ab11a48647509e3607e7dfd800dde9107fc97f Author: Alan Garny Date: Mon Feb 20 15:00:37 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 66c0977fb629fa2273074703517e52e53638c177 Author: Alan Garny Date: Mon Feb 20 14:15:53 2017 +0100 Some minor cleaning up. commit 21c00c106d4448c89694c05ebda00ed471b34bb3 Author: Alan Garny Date: Mon Feb 20 13:49:27 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit e7bb750f76397a78d8aa80a9de34f0f75c5aa7d5 Author: Alan Garny Date: Mon Feb 20 10:45:23 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit e832f70da7bb177ce89dfac9f45e27130e2e0a86 Author: Alan Garny Date: Sun Feb 19 10:30:52 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit 16f946bc9767a8c84eaf6a4724a07cc7708b323a Author: Alan Garny Date: Sun Feb 19 10:29:01 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit c4583547de976cb56112e89eba4edc95fd4a0698 Merge: af034849f c2e2537c4 Author: Alan Garny Date: Sun Feb 19 10:02:03 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit c2e2537c4b34458d3725dfbc68395d14c7423193 Merge: 00aeea5c1 0dec26922 Author: Alan Garny Date: Sat Feb 18 19:53:28 2017 +0100 General: keep track of the position and size of dialogs (closes #1224). commit af034849fe80c4c8ed9616fff4d53dda581887ca Merge: 8cf1a1472 00aeea5c1 Author: Alan Garny Date: Fri Feb 17 20:22:26 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit 0dec269228a21a1d60125ce52f2e8b2f9f66d920 Author: Alan Garny Date: Fri Feb 17 20:17:34 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 7a4ae65abc77fd671d3b8d8e447758e5ab67b7a3 Author: Alan Garny Date: Fri Feb 17 20:14:25 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 020ef459ca91796c19ef5d0afd7f31542af67343 Author: Alan Garny Date: Fri Feb 17 20:09:04 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit c404f760c9d0fbac1765652db175961f1a7d3355 Author: Alan Garny Date: Fri Feb 17 19:47:50 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 0d26835486dfed8d8f5ec1bd4780c383ba18e9a8 Author: Alan Garny Date: Fri Feb 17 19:35:11 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 2d4a1b36111714411c6dfb94b67852ddd1d346ea Author: Alan Garny Date: Fri Feb 17 19:25:41 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit cab3348d6232aab261531efe4fa4ffa7a346145e Author: Alan Garny Date: Fri Feb 17 19:25:19 2017 +0100 Some minor cleaning up. commit 5c6eb2e4fbaeab3c1addcae89541144dfeeffb76 Author: Alan Garny Date: Fri Feb 17 19:05:25 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 8d8528066d512ca259eb890d97b96e8d50b0cd4c Author: Alan Garny Date: Fri Feb 17 18:40:40 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 995c6edfd54c3d82fb32ae9a7d3c5ea73911940c Author: Alan Garny Date: Fri Feb 17 18:31:27 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 63051641bed5e0b5361a7057e6f900bd2376435a Author: Alan Garny Date: Fri Feb 17 18:26:03 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 97340dd4c68229160cfba389215164b332853879 Author: Alan Garny Date: Fri Feb 17 18:21:32 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit d41741a3a0b68859b8506c82c12bb53942a99698 Author: Alan Garny Date: Fri Feb 17 18:14:41 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit 00aeea5c10828275f6ab5c36a69fbde7615b55d8 Author: Alan Garny Date: Fri Feb 17 17:41:13 2017 +0100 Revert "General: some work on keeping track of the position and size of dialogs (#1224)." This reverts commit 15ee521086ebd48c52c2719b2eedf62cbecb85c3. commit 15ee521086ebd48c52c2719b2eedf62cbecb85c3 Author: Alan Garny Date: Fri Feb 17 17:40:48 2017 +0100 General: some work on keeping track of the position and size of dialogs (#1224). commit b4832620d60bfb3c02e1cdb59ad3748cb5714c1f Author: Alan Garny Date: Fri Feb 17 16:35:33 2017 +0100 Some minor cleaning up [ci skip]. commit 8a332d647e553988d5eab98b97386154afed494e Author: Alan Garny Date: Fri Feb 17 16:16:45 2017 +0100 PMR support: let the user know if we simply cannot authenticate (closes #1223). commit f367801194630933655f00aa1a319eb01afb4bf2 Author: Alan Garny Date: Fri Feb 17 11:26:34 2017 +0100 PMR support: slight improvement to the use of our Web browser for authentication [ci skip]. commit 8cf1a14729be124ab5a34797dc7cb10a256c0376 Author: Alan Garny Date: Thu Feb 16 18:11:18 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 82fb83f5ad573cb6a7441c25b851e6cbfaf3eca5 Author: Alan Garny Date: Thu Feb 16 17:57:50 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit d4d3f22d94a57b9dac49cd20f6cc3cf835111a60 Author: Alan Garny Date: Thu Feb 16 17:34:49 2017 +0100 Some minor cleaning up. commit 6af65b44fc56c1ca5dccdb64f630be89230e8b44 Author: Alan Garny Date: Thu Feb 16 17:32:11 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 014a6e8361eb56f98a9c8c922cc32f8625d8d8e3 Author: Alan Garny Date: Thu Feb 16 17:27:00 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 8f534a219ddbc3c0a5411ceede24cd01c2f3c8eb Author: Alan Garny Date: Thu Feb 16 17:08:53 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 9b1715cd3e84c0a9a040922d7d2c8ec27ef8ec93 Author: Alan Garny Date: Thu Feb 16 17:08:10 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit db98713d4564cdb2a545c767e9398fb5c92d05e0 Author: Alan Garny Date: Thu Feb 16 16:09:35 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 1b81e3cb35f7aa16f483c99d1237d684dac8a743 Author: Alan Garny Date: Thu Feb 16 16:03:05 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit b492047cba707b61db84c6a1dfde289e653814f5 Author: Alan Garny Date: Thu Feb 16 14:52:14 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 309883ab9876c6030f94ae9990a42cce4c2be4a3 Author: Alan Garny Date: Thu Feb 16 14:34:47 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit daf13a1cee0e07a1fefcef6b8063edbdbe58c78b Author: Alan Garny Date: Thu Feb 16 14:15:36 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 11278aa5a1939b783be0a99546f86a16acac8788 Author: Alan Garny Date: Thu Feb 16 14:06:24 2017 +0100 Some minor cleaning up. commit 4fe3b8802bb58dda8d0248fcccd8a1f41b7ece61 Merge: b5a57fb13 c80b19cd1 Author: Alan Garny Date: Thu Feb 16 13:13:49 2017 +0100 Merge branch '\''master'\'' into pmr-workspaces-window. commit c80b19cd16baf527749febe988aa66a17f5c2b89 Author: Alan Garny Date: Thu Feb 16 13:11:39 2017 +0100 CellML Annotation view: improved our use of the progress bar for the Web viewer. commit b52856535653162800511d9347af403074ffbd1b Author: Alan Garny Date: Thu Feb 16 12:57:09 2017 +0100 GUI: optimised our use of splitters. commit b5a57fb13f24be1a18eb523b5bb6cab624d1a669 Author: Alan Garny Date: Thu Feb 16 10:39:28 2017 +0100 Some minor cleaning up. commit ddaeffbd3b2169959a605f5dad0abee94c6f1773 Merge: a1faddad4 f07fc4d03 Author: David Brooks Date: Thu Feb 16 20:30:17 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit f07fc4d036cac9389c836a1bed756fcec4bff6a9 Author: David Brooks Date: Thu Feb 16 20:29:33 2017 +1300 PythonQtAPI plugin doesn'\''t use the Plugin interface so remove it (#1085). commit a1faddad489031ff69de39d1887fa25e0102b286 Author: David Brooks Date: Thu Feb 16 16:15:14 2017 +1300 Jupyter notebook runs an OpenCOR kernel! (#1085). commit d2b44a3d2504052b4818312685abe5dfe57d08fc Merge: 125c165a2 c1d003e96 Author: David Brooks Date: Thu Feb 16 08:16:42 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit b1d0c98770e08769623af731ef558b763d194625 Author: Alan Garny Date: Wed Feb 15 18:10:43 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 72d1ccedfb38e5921d4f0f35fb16ab505901b06a Author: Alan Garny Date: Wed Feb 15 18:10:23 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 1ebf22aa3e179e7a38deb97c21c7dac08fb78713 Author: Alan Garny Date: Wed Feb 15 17:21:56 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit a2522d12f740a57e01634aa599822bd51693f408 Author: Alan Garny Date: Wed Feb 15 16:48:55 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit 34dc6e3dc1ce986b51acc3bc570d87a3a84df600 Author: Alan Garny Date: Wed Feb 15 16:28:23 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit 71736b2e981697598cf30fe7e4ca02458a79ac04 Author: Alan Garny Date: Wed Feb 15 16:28:11 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit 7f8ce568c83a77a59bb7ccace38ac1781724b6b0 Author: Alan Garny Date: Wed Feb 15 11:49:57 2017 +0100 Some minor cleaning up. commit c1d003e9685da2135e4df5a8277f6263d144184a Author: David Brooks Date: Wed Feb 15 23:34:20 2017 +1300 Retrieve the correct package archive when git branches differ in their package configuration and/or version (#1106). commit 125c165a2ceb86f0f6efc21afb8fe3fadb2ab056 Merge: 8997ec632 2c8ecdfe4 Author: David Brooks Date: Wed Feb 15 15:51:13 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit 2c8ecdfe4ecf2979c9f62e09146172810dfd886b Author: David Brooks Date: Wed Feb 15 15:50:28 2017 +1300 Minor tidy ups (#1085). commit b422dd2d470c58487d569412b88ff85176c52b7e Author: David Brooks Date: Wed Feb 15 15:49:54 2017 +1300 Use our PythonQt branch (#1085). commit 635a483d58cdabf694305d6e5e1d35365b65cd64 Author: David Brooks Date: Wed Feb 15 15:48:41 2017 +1300 Update `ctkAbstractPythonManager::executeFile` for Python 3 (#1085). commit bfb012f9a15e798ba9a2f67ebe73af4d83787c76 Author: David Brooks Date: Wed Feb 15 15:47:36 2017 +1300 Don'\''t crash getting simulations if there'\''s no single cell widget... (#1085) commit d2cb16f84dddeb5d4f97230f81d4ee216039f5e1 Author: David Brooks Date: Wed Feb 15 15:46:32 2017 +1300 Console window requires Python wrapper plugin (#1085). commit e8f4a92184871a68b39e7ab363e64118881ab186 Author: Alan Garny Date: Tue Feb 14 18:33:05 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR (#1212 and #1213). commit 351d8df51a9d131db897185fe462e3b5adc27071 Author: Alan Garny Date: Tue Feb 14 17:54:59 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit c818ebca0659f6e80a909352aad7d8d40efa6c10 Author: Alan Garny Date: Tue Feb 14 17:44:21 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit 772a25854a96e0fbad910e7c7cfcc70d2bb5e8ee Author: Alan Garny Date: Tue Feb 14 16:33:17 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files (#1213). commit 1aa50a215180e221d7159ddf1a7ad0bec18fe7fa Author: Alan Garny Date: Tue Feb 14 11:30:03 2017 +0100 PMR Workspaces window: some work on getting rid of the stage/unstage context menu item (for a file) (#1212). commit 837646da597d44dc1c890b29f333f1064277eda7 Author: Alan Garny Date: Tue Feb 14 11:03:27 2017 +0100 PMR Workspaces window: some work on getting rid of the stage/unstage context menu item (for a file) (#1212). commit 8997ec6325cb944e15ecd369a08cde3b95cc7f4d Merge: 47cee29cf baaf3b4ca Author: David Brooks Date: Tue Feb 14 08:22:12 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit baaf3b4ca32234196bab5cc4c3e63c72c838bbfb Author: David Brooks Date: Tue Feb 14 08:17:56 2017 +1300 Zipping the python library was referencing the partly created archive... (#1085). commit b3e0e0f48174efc6bef86e573ba0be0aae0777b8 Author: Alan Garny Date: Mon Feb 13 16:33:43 2017 +0100 Some minor cleaning up. commit a1f8efe912066111bda463019fdcc974b3ac1035 Author: Alan Garny Date: Mon Feb 13 16:04:18 2017 +0100 File Organiser window: some minor refactoring [ci skip]. Two less files to compile as such. commit 85679ed0d8f42d28ad30cf3b1ef4d2c292cf85d7 Author: Alan Garny Date: Mon Feb 13 15:57:51 2017 +0100 PMR Workspaces window: some minor refactoring [ci skip]. One less file to compile as such. commit 5b602ea947a72c03bc2283b2660691ca4199ad11 Author: Alan Garny Date: Mon Feb 13 15:53:29 2017 +0100 Editor widget: some minor refactoring [ci skip]. One less file to compile as such. commit 654993fa48c7e1c4ae76906dc3d652553b9f8645 Author: Alan Garny Date: Mon Feb 13 13:00:35 2017 +0100 PMR-based windows: only reload them (upon changes to preferences) if the PMR URL is different (closes #1222). commit 47cee29cfc08a7951827c8727fe454a6e33b39a6 Author: David Brooks Date: Mon Feb 13 16:07:15 2017 +1300 Work on a Jupyter kernel for OpenCOR (#1085). commit 5c15e325f35573642c32616b4bddb2f6a4612a02 Author: Alan Garny Date: Fri Feb 10 15:55:25 2017 +0100 Slight update to our What is New page [ci skip]. commit f230d0ce8141564d1bb970a546724b6d0935e9f7 Author: Alan Garny Date: Fri Feb 10 15:45:42 2017 +0100 CellML Annotation view: show the progress bar of our Web viewer [ci skip]. commit 2a1fc94de8a33633ce0f1286844984846ce7cf84 Author: Alan Garny Date: Fri Feb 10 14:54:00 2017 +0100 New snapshot. commit c516bfca8dbda9bd21bbf3c54081ef235c358e55 Author: Alan Garny Date: Fri Feb 10 14:53:18 2017 +0100 Slight update to our Downloads page [ci skip]. commit 5802f25c04e521942e3598e8104935fd0120a47d Author: Alan Garny Date: Fri Feb 10 14:46:01 2017 +0100 Slight update to our Known Limitations documentation [ci skip]. commit 5cabe813f493946257c1182080612aeb6dfcb48e Author: Alan Garny Date: Fri Feb 10 14:36:28 2017 +0100 Non-fixed dialogs: make sure that they all have a minimum size [ci skip]. In the case of our Plugins and Preferences dialogs, we do this through the `resizeEvent()` method since the content of those dialogs may change depending on what the user does. commit b0cba90a0e2fd7503f4cdc1447ede8df81ef6bb5 Author: Alan Garny Date: Fri Feb 10 14:33:50 2017 +0100 Core plugin: added a `minimumWidgetSize()` method [ci skip]. commit 866681563d33e48029909327aa5a88436b565e29 Author: Alan Garny Date: Fri Feb 10 13:29:42 2017 +0100 PMR support: slight improvement to the Preferences widget [ci skip]. commit 9ca6fcfc69d572c6d6c839bd8e66be71fad8a115 Merge: d1141bc13 40109c915 Author: Alan Garny Date: Fri Feb 10 11:57:09 2017 +0100 PMR Workspaces window: added the '\''teaching'\'' instance to the list of PMR instances (closes #1218). commit 40109c915df54537cb1c8e0e9e574644dc2080e9 Author: Alan Garny Date: Fri Feb 10 11:15:45 2017 +0100 PMR Workspaces window: added the '\''teaching'\'' instance to the list of PMR instances (#1218). commit d1141bc1342709a9cbadb17ca02e125a083af197 Author: Alan Garny Date: Fri Feb 10 10:26:01 2017 +0100 Some minor cleaning up [ci skip]. commit e523c61d43cab8b89c75ca56c7ad677285d0ceba Merge: 24f584c3d 9d28de578 Author: David Brooks Date: Fri Feb 10 11:34:28 2017 +1300 Merge branch '\''pythonplugin'\'' into jupyterplugin commit 9d28de5784cf4dee48df3629e18741c69b864006 Merge: 3f82cd282 06a0033d2 Author: David Brooks Date: Fri Feb 10 11:33:52 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 24f584c3da7fd71a5c2260e73a15575a8729d345 Author: David Brooks Date: Fri Feb 10 11:28:07 2017 +1300 Include SQLite in Python build for IPython and Jupyter. commit 3f82cd2823408e75a7c342a70700a4236a9e2def Author: David Brooks Date: Fri Feb 10 11:20:16 2017 +1300 Use a new git branch for Jupyter specific changes (#1085). commit 834c1d0acc9a8ab9db797a2319c8c81da54c0e5a Author: David Brooks Date: Fri Feb 10 11:10:41 2017 +1300 Use relative RPATHs in python executable (#1085). commit e1c9bedffa0a18e50eaab4ecdcbece2ba8baedf5 Author: David Brooks Date: Fri Feb 10 11:08:39 2017 +1300 Linking Python into OpenCOR executable is only for Linux (#1085). commit 06a0033d216b47ce8703f23fc175b4103bdbe99e Merge: e73cb9b50 4760de95c Author: Alan Garny Date: Thu Feb 9 18:28:10 2017 +0100 WebViewer widget: allow the use of a progress bar (closes #1219). commit e73cb9b5075eb97c6c2117b8500af01cfedb3582 Author: Alan Garny Date: Thu Feb 9 17:10:57 2017 +0100 Some minor cleaning up to our Downloads pages [ci skip]. commit 4760de95c93be831bf684d38eae19918264e0618 Author: Alan Garny Date: Thu Feb 9 16:58:23 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit ce97b235f05deb27eafcc223d32d27afd7f4e4c5 Author: Alan Garny Date: Thu Feb 9 16:45:35 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit c9922fa0c7b330df600d0f69fdc210101a18acfa Author: Alan Garny Date: Thu Feb 9 16:45:09 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit c219e03d66991974dd732156229c9c84d7876cfc Author: Alan Garny Date: Thu Feb 9 16:37:20 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit b0e45354dcb3683651a94d5ca093e8b0caf86c88 Author: Alan Garny Date: Thu Feb 9 13:42:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit 250f1a233941adf4a9866e7a939e000606070501 Author: Alan Garny Date: Thu Feb 9 12:56:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit 979525b06fcc85d2c5cea1867403bb1269311c97 Author: Alan Garny Date: Thu Feb 9 12:34:45 2017 +0100 Revert "WebViewer widget: some work on allowing the use of a progress bar (#1219)." This reverts commit 3a7cd3c801886edecc2b780cec25679e68f8e94e. commit 3a7cd3c801886edecc2b780cec25679e68f8e94e Author: Alan Garny Date: Thu Feb 9 11:45:54 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit 191d37e702b2b3410da3d20b32a6f62e52aa5658 Author: Alan Garny Date: Thu Feb 9 11:04:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar (#1219). commit 39199b46b2d3337bbc101da7cfa624854f2fdc31 Author: David Brooks Date: Thu Feb 9 22:54:41 2017 +1300 We need to explicitly specify the locations of headers and libraries of pre-built external projects (#1106). commit 2bd60d480c7a13bf8cdf40cf3df4b8553e066afb Author: David Brooks Date: Thu Feb 9 15:43:29 2017 +1300 Add initial versions of README files for building Python related plugins. commit 046f2184ab316f60de475edb10cbda1d340f8e26 Author: David Brooks Date: Thu Feb 9 15:42:19 2017 +1300 Download latest versions of pre-built external packages (#1106). commit c7d0c3639349c67bd809fb89aa30d06fa44dd71f Author: David Brooks Date: Thu Feb 9 15:40:59 2017 +1300 Include SQLite in Python build (for IPython and Jupyter) (#1085). commit b108e853206fd350cfa7794a51d0a425a361a6e0 Author: David Brooks Date: Thu Feb 9 15:35:46 2017 +1300 Ensure the Python library is linked to the OpenCOR executable for Linux (#1085). commit eb82946d00fc7b1b54dc2d436a20a2a44c6160f9 Author: David Brooks Date: Thu Feb 9 15:34:02 2017 +1300 More work on building Python under Linux (#1085). commit 2d0de8eff122651de9f625414c8bb1c8e740218c Author: David Brooks Date: Thu Feb 9 15:27:16 2017 +1300 Tidy up Python plugin'\''s CMake script (#1085). commit cc850a38ef5ca511dc320cde9cb4d7ef1cdbe262 Author: David Brooks Date: Thu Feb 9 15:07:34 2017 +1300 Get OpenSSL building under Linux (#1101). commit ea7af8ac3365bd129f44ba24bbd36bf51e046707 Author: David Brooks Date: Thu Feb 9 15:05:19 2017 +1300 Let CMake know the location of our Python headers andf library (#1085). commit c99678f1e2afd58c78cf31c6ef9d689965f56fa8 Author: David Brooks Date: Thu Feb 9 15:02:16 2017 +1300 The Python and PythonQtAPI plugins need code for their interfaces... (#1085). commit 85069713f1377bba3cfbc04cf2110048f2c0befd Author: David Brooks Date: Thu Feb 9 14:59:09 2017 +1300 Always update, and hence configure and build, CMake external projects (#1106). commit 25428bc408823496b0bb46c83c9cdca3eea16818 Author: Alan Garny Date: Wed Feb 8 20:00:00 2017 +0100 New snapshot. commit 4d9b02618d4157a3ef9b76706d2956360e68de70 Author: Alan Garny Date: Wed Feb 8 19:58:41 2017 +0100 Slight update to our What Is New page [ci skip]. commit 3bae8dffd3c2c3542195c435dbf6505c4df2488f Merge: ec92c7241 e97fc23ce Author: Alan Garny Date: Wed Feb 8 19:54:33 2017 +0100 PMR Workspaces window: allow the PMR instance to be set in user Preferences (closes #1069). commit ec92c7241d6dd679f6622c39cba56d30730e84cf Author: Alan Garny Date: Wed Feb 8 19:24:57 2017 +0100 Slight updates to the downloads page [ci skip]. commit e97fc23ceb3f6f7e70f214607e397819f95b0450 Author: Alan Garny Date: Wed Feb 8 19:10:33 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 1e29622d248d656f062bd66450713af66ab6dbcc Author: Alan Garny Date: Wed Feb 8 18:58:51 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit a4bb54929c6256406723b89ae2da9ea3bf778ce9 Author: Alan Garny Date: Wed Feb 8 18:49:50 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit c2c28253d2519e9ec91fec0578c429b79994e4dc Author: Alan Garny Date: Wed Feb 8 18:35:28 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 73afed324bc5998b53de200f9a70a5ef277e6358 Author: Alan Garny Date: Wed Feb 8 17:05:21 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069) [ci skip]. commit e952a3f9a0c16e7374838d13d4945ab7403b08c1 Author: Alan Garny Date: Wed Feb 8 16:47:35 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 41435f070ce9a2fe3112d5e2b53dc0b4c317b0d9 Author: Alan Garny Date: Wed Feb 8 16:45:04 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 9530b26c97b3d24e1bc7d1709c394d5fda3748bd Author: Alan Garny Date: Wed Feb 8 16:17:05 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit f045a13a942f27e3626a683af127ddb5adc71ac4 Author: Alan Garny Date: Wed Feb 8 15:44:01 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit bd3e07371204600f1ebfb40f1d8258e5b1e0bdd9 Author: Alan Garny Date: Wed Feb 8 15:41:47 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 4ed1a3caf9c1d721ad9ed7d56cde2870df7ba008 Author: Alan Garny Date: Wed Feb 8 15:36:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 865b27b0537c71e61a4678bc5042f462fa5b9fcf Author: Alan Garny Date: Wed Feb 8 15:36:22 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit fa2066287e462a5d9881d96fa15c837d1a192d18 Author: Alan Garny Date: Wed Feb 8 15:03:03 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 818cd2c7090706bbbad86f00de4a5e7ed990cd2f Author: Alan Garny Date: Wed Feb 8 13:59:09 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit d0ab4468148f55789be2d35a0c8690d839a2b3db Author: Alan Garny Date: Wed Feb 8 13:45:10 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 4cdd42442534abce133f9ee26f92faa5e2fc6607 Author: Alan Garny Date: Wed Feb 8 13:28:40 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit f295b3771c3a57c316d4e9077a94bc5cdeee900a Author: Alan Garny Date: Wed Feb 8 13:18:26 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 4fd61addf0971028758492583d2862022b18cf41 Author: Alan Garny Date: Wed Feb 8 13:13:12 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 880b84ba2889853703e1b18881cd802246506c6f Merge: 30efa822b e9a1fd7a7 Author: Alan Garny Date: Wed Feb 8 13:11:17 2017 +0100 Merge branch '\''master'\'' into issue1069. commit e9a1fd7a7e42252e81b9be77ff86c91d81af0ade Author: Alan Garny Date: Wed Feb 8 11:56:09 2017 +0100 Some minor cleaning up. commit 30efa822b134a78138c8e6c2b8d4503ea6c49f5a Author: Alan Garny Date: Wed Feb 8 11:37:30 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit a45084a4975305234ad9d4990f3799ebb5e0de0a Author: Alan Garny Date: Wed Feb 8 11:35:46 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 670f3eb9da16cf8538b91515b0634dfafe08c3ed Author: Alan Garny Date: Wed Feb 8 11:02:21 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit c00deb70c9fd94e0cec8112030f4a5c158dbcf30 Author: Alan Garny Date: Wed Feb 8 11:00:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit eb3cfe59d6bd75cf12656c7fb98496b6927dbeb7 Author: Alan Garny Date: Wed Feb 8 10:56:08 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit f830943be3120eb1ec3a5b4025c9a746ffdccbee Author: Alan Garny Date: Wed Feb 8 10:44:47 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit ae91f51321303c23e102995bd4449f21127c4045 Author: Alan Garny Date: Tue Feb 7 19:12:53 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 6a0611957a51764aeab68476fafa7b984954ae6b Author: Alan Garny Date: Tue Feb 7 18:56:41 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit cfc918a49a8a8418059e9dc451c168eb005c1b59 Author: Alan Garny Date: Tue Feb 7 18:33:42 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit e3179c31052863e5afbf4517942ed366386b0eaf Author: Alan Garny Date: Tue Feb 7 16:58:12 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 0b50209343fb26faaaf739101433ec37501000dc Author: Alan Garny Date: Tue Feb 7 16:45:17 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit e11d52cb5fbe3ab451e9397bfd55c4ac0057fc7d Author: Alan Garny Date: Tue Feb 7 16:40:36 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 196f4c98c02c070808259bca18bfe1fa2af79dc4 Author: Alan Garny Date: Tue Feb 7 16:36:14 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit a1179d9f2df2a7d54c699fcc6db2d474f322e46c Author: Alan Garny Date: Tue Feb 7 16:34:56 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 8715662230d43cc047fda23838ebc8134c29a902 Author: Alan Garny Date: Tue Feb 7 16:26:56 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit e9c90ff5f5cc3a9a8230e0f5cfea800cd9eb57cb Author: Alan Garny Date: Tue Feb 7 16:24:03 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 027c6775bd2cb062de5c10cc2d27946d55b9e073 Author: Alan Garny Date: Tue Feb 7 15:56:32 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 65f51bbbe57d01672eaf87c71ba3f98dc259b17a Author: Alan Garny Date: Tue Feb 7 15:34:58 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 196d4fa57b7227da4c4a1b7d6a4d4757254cb96e Author: Alan Garny Date: Tue Feb 7 15:23:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit ddb8a3dffc56fe14f925d8fc354c74a2e28c17ab Merge: 4e55b44fc f8e9cf926 Author: Alan Garny Date: Tue Feb 7 14:20:44 2017 +0100 Merge branch '\''master'\'' into issue1069. commit f8e9cf926820887a0f947edb6af5d66f73194a53 Merge: 6ddb06df4 2d06e291a Author: Alan Garny Date: Tue Feb 7 14:12:32 2017 +0100 PMR support: don'\''t rely on an external browser to do the PMR authentication (closes #1211). commit 6ddb06df4f00e916af657ae99140770fb8744704 Merge: 0a6b48707 f171350a6 Author: Alan Garny Date: Tue Feb 7 14:11:49 2017 +0100 Slight update to OAuth. commit f171350a601f341203ca7a0f7deb9acc00e37caa Author: Alan Garny Date: Tue Feb 7 13:28:30 2017 +0100 Slight update to OAuth. commit 3e3f5e74ef4817b4cafc460d67a79184ff5c4760 Author: Alan Garny Date: Tue Feb 7 13:16:38 2017 +0100 Slight update to OAuth. commit 2d06e291a3b1414f8f9ad3b00bf864d1951f7fa1 Author: Alan Garny Date: Tue Feb 7 13:02:59 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit 011e44ba9f683f30f8a48f56fb912c54cd180355 Author: Alan Garny Date: Tue Feb 7 12:48:11 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit a3e503b96ffccfa8883de763d0098e35e007f163 Author: Alan Garny Date: Tue Feb 7 12:36:38 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit 52e7d01220fe582ff2d749be3260482ef51d56ed Author: Alan Garny Date: Tue Feb 7 11:48:30 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit 780e6e21dd4b24a5685af40259fcdf18f383e2c5 Author: Alan Garny Date: Mon Feb 6 19:31:49 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit f49e5455a75906dbf981163ce6eaa8a3554d943f Author: Alan Garny Date: Mon Feb 6 19:23:28 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit d1ee11d65cb0c4e69953c8bbbe747226e9499112 Author: Alan Garny Date: Mon Feb 6 19:06:46 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication (#1211). commit 4e55b44fc38dc61b6d256ba9203c923bc0fe8e75 Author: Alan Garny Date: Mon Feb 6 15:58:50 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences (#1069). commit 0a6b487072f8427a9c40d72238dd4b1e555e1064 Author: Alan Garny Date: Mon Feb 6 15:26:48 2017 +0100 Help window: fixed a few things, now that we set our locale as early as possible. Also fixed a small issue with the VPR logo in our error message. commit d1c0d0a0739580542f777e0955c2ee5a39534e5d Author: Alan Garny Date: Mon Feb 6 14:33:50 2017 +0100 Some minor cleaning up [ci skip]. commit 02a6be9ba72a9b5f4b7c72dbb62789a28f49f523 Author: Alan Garny Date: Mon Feb 6 14:14:56 2017 +0100 Set the locale as early as possible [ci skip]. We used to do it at the end of MainWindow::loadSettings(), but former note #2 is not relevant anymore (since we don’t keep track of the number of graph panels anymore in the SingleCell view) and, in fact, it should never have been relevant in the first place. In other words, we should have done things in s such a way that it wasn’t dependent on whether the locale was already set or not. commit 2b4ab5c36730a77c2c0571b470e51a39666bc2c6 Author: Alan Garny Date: Mon Feb 6 13:36:26 2017 +0100 CellML support: generate an error when a model has more than one variable of integration (closes #1210). Oops, forgot to check our tests and actually add one for a model that has more than one VOI! commit 97c3f987cff9be0b8b9caf456fa20dfb3717689f Author: Alan Garny Date: Mon Feb 6 11:11:04 2017 +0100 Documentation: removed the "Top Priority" label [ci skip]. It just doesn’t feel ‘right’ (very subjective, I know). commit 8995e87c139efc291ddcc6423be6e072f9ba8fec Author: Alan Garny Date: Mon Feb 6 11:07:02 2017 +0100 CellML support: generate an error when a model has more than one variable of integration (closes #1210). commit c3d6a6d6cace837f428a68e0731427ec886852de Author: Alan Garny Date: Sat Feb 4 10:35:33 2017 +0100 PMR Workspaces window: warn the user if we try to commit without a message (closes #1209). commit 6c948ccd101e4076169c039790eecdf3e2dd5c23 Author: Alan Garny Date: Sat Feb 4 10:32:04 2017 +0100 PMR Workspaces window: let the user know if no name and/or email are provided (closes #1208). commit 005fdb4fd6470f558608330c2a2db647afd3e5b3 Author: Alan Garny Date: Sat Feb 4 10:23:53 2017 +0100 Had forgot to translate a few things [ci skip]. commit 464b0390efb37881cb3f4e192c53c0a44fd2dcb9 Author: Alan Garny Date: Fri Feb 3 21:14:09 2017 +0100 Slight update to our downloads page [ci skip]. commit 4933aa3036f0d89a415329a05174ce484dfa7321 Merge: 79eabe111 5bd81423b Author: Alan Garny Date: Fri Feb 3 21:08:12 2017 +0100 PMR Workspaces window: allow the user'\''s name and email to be set in Preferences (closes #1057). commit 79eabe1115f24e4d1114b076c2f53bbe68cd506d Author: Alan Garny Date: Fri Feb 3 18:57:47 2017 +0100 Oxygen library: upgraded to version 5.30.0 [ci skip]. commit 5bd81423b1f1141350db11aae72ac98ca8f28c91 Author: Alan Garny Date: Fri Feb 3 17:25:11 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit 2789dfe52a8d0c7c58197634ffaf74b909cfb6cf Author: Alan Garny Date: Fri Feb 3 17:22:39 2017 +0100 Some minor cleaning up. commit eb4a06877754a8c41f10e563bf502f4e16b5cfba Author: Alan Garny Date: Fri Feb 3 15:41:42 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit d5bc79a76a71cb305604fc85bafc1f9261e4f124 Author: Alan Garny Date: Fri Feb 3 15:38:49 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit 7b221b1aa63305c37281d1b2f5a29d8af348249a Author: Alan Garny Date: Fri Feb 3 15:33:02 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit a535d369d17bcfb05d562346ae3fcc22ba93756f Author: Alan Garny Date: Fri Feb 3 15:00:45 2017 +0100 Some minor cleaning up. commit a25d88bad7a97cc2a5c043ae13f4fd1a58811368 Merge: bed73b5e4 0fcd31e18 Author: Alan Garny Date: Fri Feb 3 14:41:30 2017 +0100 Merge branch '\''master'\'' into issue1057. commit 0fcd31e18a23bee34f37167c1e8675d72798eecb Author: Alan Garny Date: Fri Feb 3 14:41:18 2017 +0100 Some minor cleaning up [ci skip]. commit bed73b5e4d1f2de262d5712e3677d00adee41c6f Merge: f70464522 230c30b59 Author: Alan Garny Date: Fri Feb 3 14:36:08 2017 +0100 Merge branch '\''master'\'' into issue1057. commit 230c30b597b2e5bbf7cb822233d31a443de39edb Author: Alan Garny Date: Fri Feb 3 14:35:52 2017 +0100 Some minor cleaning up [ci skip]. commit f70464522a1e08ce7ea9e99ec04be392e20a3ef2 Author: Alan Garny Date: Fri Feb 3 14:02:46 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit cf26bd1c97a2beb4780589086f18f3511e44fd4a Merge: 26c23a697 ff7774ef6 Author: Alan Garny Date: Fri Feb 3 13:19:16 2017 +0100 Merge branch '\''master'\'' into issue1057. commit ff7774ef62189d2c70c081af43a5697c96fed308 Author: Alan Garny Date: Fri Feb 3 13:18:57 2017 +0100 Some minor cleaning up [ci skip]. Replaced “dialog box” with either “dialog” or “message box”. commit 26c23a6978b9a9a96ad736cb9688c21675416b90 Merge: 6bc5b8cbe 351642e2b Author: Alan Garny Date: Fri Feb 3 13:03:26 2017 +0100 Merge branch '\''master'\'' into issue1057. commit 351642e2be7cbbdb82b8b542c7e97f324b50c190 Author: Alan Garny Date: Fri Feb 3 13:03:03 2017 +0100 Some minor cleaning up [ci skip]. commit 6bc5b8cbe718f30936362c5e3c15ba35b0b107c7 Merge: 051ce778e 7cb53d18a Author: Alan Garny Date: Fri Feb 3 10:26:27 2017 +0100 Merge branch '\''master'\'' into issue1057. commit 7cb53d18a39de70ff35ca60b09232d091cb9015b Author: Alan Garny Date: Fri Feb 3 10:25:38 2017 +0100 Slight update to our prerequisites [ci skip]. commit 051ce778e2c68361fb0c382dc6be5de2735b2d89 Merge: 617498e1a 65ad8a795 Author: Alan Garny Date: Fri Feb 3 09:36:24 2017 +0100 Merge branch '\''master'\'' into issue1057. commit 65ad8a79521699b2c03c57a6a4f84d1bdde3d43a Author: Alan Garny Date: Fri Feb 3 09:35:55 2017 +0100 Some minor cleaning up [ci skip]. commit 617498e1a4663602ccb07e6f56401230dd829a9e Author: Alan Garny Date: Thu Feb 2 19:35:37 2017 +0100 PMR Workspaces window: some work on allowing the user'\''s name and email to be set in Preferences (#1057). commit 4180787a38572b40b183e7d345c475d1867b62d7 Author: Alan Garny Date: Thu Feb 2 19:16:39 2017 +0100 PMR Workspaces window: fixed a problem with the log on/off icon not showing properly on a Mac with a HiDPI screen resolution (closes #1204). Sometimes, the log on/off icon didn’t have a clean background. Hopefully, this should fix it. commit 4aaf36b524ad73fa25aab1801df089fe22f35496 Author: Alan Garny Date: Thu Feb 2 19:13:59 2017 +0100 Some minor cleaning up [ci skip]. commit 05e71eed2991ed04c634336de003372f23e10c57 Author: Alan Garny Date: Thu Feb 2 18:39:26 2017 +0100 Slight improvements to our downloads page [ci skip]. commit 5f1566fc96343991859e27d568d5bc0de987d9c4 Author: Alan Garny Date: Thu Feb 2 18:33:53 2017 +0100 PMR Workspaces window: fixed a problem with the log on/off icon not showing properly on a Mac with a HiDPI screen resolution (closes #1204). We used to use `QWidget::setGraphicsEffect()` to make the icon greenish/redish and it was working on non-HiDPI resolutions, but for some reasons things were going awry on HiDPI resolutions. So, now, we instead rely on `QGraphicsItem::setGraphicsEffect()`. It’s a bit more cumbersome, but not sure there is another solution… commit 5a60bc284f6cd6c5f6917afa8d4ca47bf0a5c30d Author: Alan Garny Date: Thu Feb 2 13:27:24 2017 +0100 Some minor cleaning up [ci skip]. commit f5d383ab31b8b0cdb4fdc5093e289598f1ae16ff Author: Alan Garny Date: Thu Feb 2 10:57:25 2017 +0100 Slight updates to our developer documentation [ci skip]. commit a07cd91bf0c97c8cd186727ace208fa2c43bd23f Merge: 1864c6a24 e98979af3 Author: David Brooks Date: Thu Feb 2 13:28:54 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit e98979af32cf4b5196a74cd13ddd03dfd35b2219 Author: Alan Garny Date: Wed Feb 1 10:37:57 2017 +0100 New snapshot. commit 1e34fa6b4455202140e70dafeed83bdd045645f6 Author: Alan Garny Date: Wed Feb 1 10:36:16 2017 +0100 Documentation: various minor updates related to our new PMR Workspaces window [ci skip]. commit 4cb3b3a8edfa6c371621a8f11436bb7e240695fe Author: Alan Garny Date: Tue Jan 31 18:58:56 2017 +0100 PMR Workspaces window: reordered the French translations [ci skip]. commit 4667e6928da9dff14463c406b4461289c005ee3d Author: Alan Garny Date: Tue Jan 31 18:50:02 2017 +0100 PMR Workspaces window: added French translations [ci skip]. commit 4f8abd572b4e6f1578df8d838d3ff603242f96ef Author: Alan Garny Date: Tue Jan 31 18:26:52 2017 +0100 PMR support: reordered the French translations [ci skip]. commit d877508845a4b8c38fabc11b48ac149e2582f0a5 Author: Alan Garny Date: Tue Jan 31 18:18:04 2017 +0100 PMR support: added French translations [ci skip]. commit a94b3d6460818cfcdb88cb0d5c7180fb0ce2c6af Author: Alan Garny Date: Tue Jan 31 17:37:18 2017 +0100 PMR support: various improvements. PMR Workspaces window: handle the case where a user deletes the folder where a workspace has been cloned. PMR support improvements: - Workspace manager: can now a remove workspace. - Workspace: can’t set the path or ownership anymore. Need to specify a path when opening. Handle the case where the folder where we are cloned has been deleted. commit 108ad742802582f234ac3fc3e4874fbca99b60f8 Author: Alan Garny Date: Tue Jan 31 15:20:46 2017 +0100 Some minor cleaning up [ci skip]. commit 9f0e3ced91154ef8aac0790ae455da56fd0f7386 Author: Alan Garny Date: Tue Jan 31 14:52:18 2017 +0100 ZIP support: updated the code for the Qt-side of things. commit ad08e3dfb2bbf5be68544c67c180a83ea87f0ac4 Author: Alan Garny Date: Tue Jan 31 14:14:42 2017 +0100 File Organiser window: some refactoring. The idea was to stop using QStandardItem::setData()/data() and, instead, rely on a QStandardItem-based class. commit 1864c6a2451bf5e267e562dc5c23de90ee5fbbb0 Merge: ed0d115c9 022cd130a Author: David Brooks Date: Tue Jan 31 13:12:56 2017 +1300 Merge branch '\''master'\'' into python_issue1141 commit 022cd130a53213971be4838914cdc05b0874a901 Author: Alan Garny Date: Mon Jan 30 18:04:19 2017 +0100 PMR Workspaces window: some minor refactoring. commit ebf8565d098f60ef86f3dcedff9f2cf43538736f Author: Alan Garny Date: Mon Jan 30 17:38:26 2017 +0100 OpenSSL: upgraded to version 1.0.2k (closes #1202). commit ad833550dcb726a8a681ec010c7c39e749342e6f Merge: f1048c0ba 7f8d359cc Author: Alan Garny Date: Mon Jan 30 16:58:47 2017 +0100 PMR Workspaces window: made PR #1124 more in line with the rest of OpenCOR (closes #1141). commit 7f8d359cc18c253bdcb51d81cfc41e596b949ae7 Merge: fc9f56cca f1048c0ba Author: Alan Garny Date: Mon Jan 30 16:12:04 2017 +0100 Merge branch '\''master'\'' into issue1141. commit f1048c0ba6227dcfeea37c33de9ed840f8369516 Author: Alan Garny Date: Mon Jan 30 16:10:41 2017 +0100 Some minor cleaning up [ci skip]. commit fc9f56cca07c5db2f2ff6c5529b6b7ce93d74c39 Author: Alan Garny Date: Mon Jan 30 16:09:30 2017 +0100 PMR support: switched to the official version of PMR. commit ed0d115c9e0c071c19b8d1ddd9f2da6da62add8a Author: David Brooks Date: Sun Jan 29 14:30:23 2017 +1300 Python helper scripts need to be in git... (#1085). commit 699d3e1b51fbb526ad37d9c2b44ce5236166a7d4 Author: Alan Garny Date: Sat Jan 28 10:10:59 2017 +0100 Some minor cleaning up. commit 7148eaab80277292b69b123807efc8cadb097c54 Merge: 423406d48 98a51f5d2 Author: Alan Garny Date: Sat Jan 28 10:06:20 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 98a51f5d23217fee31aea3c855c1decb27e38fef Author: Alan Garny Date: Sat Jan 28 10:05:38 2017 +0100 Some minor cleaning up [ci skip]. commit 2ddd6ec78585dc1230a991e6142c9a4ad9e6d759 Merge: acabf9a2d e4a084445 Author: David Brooks Date: Sat Jan 28 20:37:09 2017 +1300 Merge branch '\''pythonplugin'\'' into python_issue1141 commit e4a0844454c799ff72cf7380a6b83cfa86d768a9 Author: David Brooks Date: Sat Jan 28 14:28:09 2017 +1300 Remove unused CMake parameter (#1085). commit 423406d480480f97fe963c7f0de3872129c7fe97 Author: Alan Garny Date: Sat Jan 28 00:52:29 2017 +0100 Some minor cleaning up. commit 50eba26628ce76749898d69667c8e8ddb2287715 Author: Alan Garny Date: Sat Jan 28 00:50:28 2017 +0100 Revert "Some minor cleaning up." This reverts commit ba76dac1227dd6754e28ddb21db41ae17d20e59f. commit 238f00c1373c53dcdbbb548612b59547a3da31c1 Author: Alan Garny Date: Sat Jan 28 00:45:11 2017 +0100 PMR window: updated translations. commit ba76dac1227dd6754e28ddb21db41ae17d20e59f Author: Alan Garny Date: Sat Jan 28 00:41:00 2017 +0100 Some minor cleaning up. commit 73cdbdbfe3be21e2b2407e015107243f99f311a3 Merge: 8929867f2 188f5b81f Author: Alan Garny Date: Sat Jan 28 00:35:31 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 188f5b81fd841ee0b15c940542a82a73f985a2dc Author: Alan Garny Date: Sat Jan 28 00:20:28 2017 +0100 File Organiser window: some minor GUI improvement. This resulted in adding an overlayedIcon() method (with different signatures). commit 1a8ed87fe6f2e8b0590060c87799d51ddf860a66 Author: Alan Garny Date: Sat Jan 28 00:18:43 2017 +0100 Some minor cleaning up [ci skip]. commit 5bca6db120ab7f1058b194ec07faa29247b3c80d Author: Alan Garny Date: Sat Jan 28 00:17:21 2017 +0100 Added a signature to our iconDataUri() method [ci skip]. commit f48b34a876101b7e41aa3680d27da347678f2800 Author: Alan Garny Date: Sat Jan 28 00:15:45 2017 +0100 File Browser window: minor GUI improvement. commit 85bcefa5d92e77b543cbf4021a921aee634974fb Author: Alan Garny Date: Sat Jan 28 00:15:17 2017 +0100 Some minor cleaning up [ci skip]. commit 8929867f210029bdfeaff2ebf08843c1122e5639 Merge: c94d4efd6 d1815ab31 Author: Alan Garny Date: Fri Jan 27 17:42:29 2017 +0100 Merge branch '\''master'\'' into issue1141. commit d1815ab31ae9e2d6c6d7ba1921d390be1f21c266 Author: Alan Garny Date: Fri Jan 27 17:41:17 2017 +0100 Replaced our formats/README.rst file with formats/README.txt since it'\''s a file that needs to be distributed and reStructuredText is probably not the most appropriate here [ci skip]. commit c94d4efd69bda248c5333f7c62268666aa4320d8 Merge: f7c298859 f3d5eb413 Author: Alan Garny Date: Fri Jan 27 17:20:13 2017 +0100 Merge branch '\''master'\'' into issue1141. commit f3d5eb4130479f98c5eaf607475e500421be8152 Author: Alan Garny Date: Fri Jan 27 17:19:35 2017 +0100 Slight update to our main CMakeLists.txt file. commit f7c298859fb4d4fe9dc453c368737facad01226b Author: Alan Garny Date: Fri Jan 27 17:04:15 2017 +0100 PMR Workspaces window: various fixes to the contents of our context menu. commit cfa62d4b2d89089d14f9ef3517e67b49119a06f8 Author: Alan Garny Date: Fri Jan 27 16:33:24 2017 +0100 PMR support: slight improvement to the way we list conflicted files. commit 48f89fb51767365c41075f2d889a4707af5ea15d Author: Alan Garny Date: Fri Jan 27 16:20:35 2017 +0100 Some minor cleaning up. commit 597c24feb0f0908713e70b3a369ef1677df15b36 Author: Alan Garny Date: Fri Jan 27 16:06:54 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit c09d29eaf2f369dae0112620fe7d7ec8e8c250e9 Author: Alan Garny Date: Fri Jan 27 15:36:45 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit 703cd9ccb01162b4c7d76247a403a89bac06d463 Author: Alan Garny Date: Fri Jan 27 15:06:48 2017 +0100 Improved our overlayedIcon() method. We can now stretch an icon, if we want. commit 9d6a2588dbbe9f31a5039882bcb5b33cd1071b8a Author: Alan Garny Date: Fri Jan 27 14:29:15 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit 3826df7db55496af32cb0bf084840f2eaaca9525 Author: Alan Garny Date: Fri Jan 27 14:24:06 2017 +0100 Some minor cleaning up. commit 1ff339e19f71172eb300603a02a835899b96112f Author: Alan Garny Date: Fri Jan 27 11:51:08 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit e01903622f011430260b1b4dfbd335a3d54ac84d Author: Alan Garny Date: Fri Jan 27 11:50:24 2017 +0100 Some minor cleaning up. commit f1fd7ce6ef1460cc27e80b3d563c6b33d3d2f9a4 Author: David Brooks Date: Fri Jan 27 23:02:57 2017 +1300 Upgrade OpenSSL to version 1.0.2k (#1202). commit 561a48b4ca019b444250ce14f4cdffd97abf5990 Author: David Brooks Date: Fri Jan 27 22:59:39 2017 +1300 Get NumPy include directory right... (#1085). commit ee00de5f3d8709fbbdf9b59a90bc132ce75bfc85 Author: Alan Garny Date: Fri Jan 27 10:14:08 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit cd13820b9baaca719a4ca6c3e63151645afe16d0 Author: Alan Garny Date: Fri Jan 27 09:56:03 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit f0abbd8648157cd1a8def6abdb898d29bfcb256e Author: Alan Garny Date: Fri Jan 27 09:24:28 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit df954db08b8d0e6d33201603cb2e61ab38d1cdd2 Author: David Brooks Date: Fri Jan 27 14:26:33 2017 +1300 Correctly specify PythonQt library under Windows (#1085). commit 7c5e56e9e9a9daec33dea261c932979b4a0c2551 Author: David Brooks Date: Fri Jan 27 14:25:40 2017 +1300 Specify NumPy include directory even if not yet built (#1085). commit 0e6ac56c196601c179d599393b6a234b1d114f05 Author: Alan Garny Date: Thu Jan 26 19:29:32 2017 +0100 Some minor cleaning up. commit be7a5d23e0bcad06c7f1e71e38a8e31bbf3707e0 Author: Alan Garny Date: Thu Jan 26 18:18:13 2017 +0100 PMR Workspaces window: added the New and Reload actions to our widget'\''s context menu. commit f46bd648f17017499c72663d9c781588a47b8ab2 Author: Alan Garny Date: Thu Jan 26 17:53:11 2017 +0100 PMR Workspaces window: fixed an original bug with creating a new workspace. The problem was that the workspace wasn’t considered to be ours upon creation, meaning that the wrong workspace icon was used. (However, upon leaving and restarting OpenCOR, everything was fine.) commit fcda510a4b12c5a661b9e486ee654631a625c929 Author: Alan Garny Date: Thu Jan 26 17:47:26 2017 +0100 Some minor cleaning up. commit b6fdfca8e4794be21e742b45b0b2563f6cc40375 Author: Alan Garny Date: Thu Jan 26 16:51:59 2017 +0100 Some minor cleaning up. commit c51a6d7423a1be0ea908a0de504334b0815684b9 Author: Alan Garny Date: Thu Jan 26 16:47:40 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit e5b98a29ee169a225dca511cfce2b4859ba023d3 Author: Alan Garny Date: Thu Jan 26 16:45:56 2017 +0100 Some minor cleaning up. commit b41a90682cee7f9a13f1b82499a171b0cde30cf8 Author: Alan Garny Date: Thu Jan 26 16:30:49 2017 +0100 Some minor cleaning up. commit e6da655fc61fd188dc4fcae8d0cf7c5ffc229a5b Author: Alan Garny Date: Thu Jan 26 16:13:50 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit ab128b409508cf3d25e2a4db4bfe9f99ef74007e Author: Alan Garny Date: Thu Jan 26 15:04:52 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit bd44ee353903e4dff31060e3ea055f8539331262 Author: Alan Garny Date: Thu Jan 26 15:01:05 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 8adb8793abbe7caef16065f989351f8dfcbd9831 Author: Alan Garny Date: Thu Jan 26 14:49:17 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 6b5850acbddaa3d4c6552c0f5a0ec3f391f629c4 Author: Alan Garny Date: Thu Jan 26 14:44:12 2017 +0100 Some minor cleaning up. commit 0042d415e16296aa803d56abe01bbb376adcc9a3 Author: Alan Garny Date: Thu Jan 26 14:38:47 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit c5320bb8f8ffffda2e5158b16a19752ddae3a89f Author: Alan Garny Date: Thu Jan 26 14:08:14 2017 +0100 Some minor cleaning up. commit 4f8f78dd7270c395afcac36e94d83d2be990cbff Author: Alan Garny Date: Thu Jan 26 14:05:40 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 77775d4eaecba595d51751b70b3f1985a7bdfdf3 Author: Alan Garny Date: Thu Jan 26 13:52:47 2017 +0100 Some minor cleaning up. commit 012d783b95b9d061c64f745f94cb6167756e97fe Author: Alan Garny Date: Thu Jan 26 13:52:33 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 2e8d7c6ac5b512b3e7870057b783546bef6cd278 Author: Alan Garny Date: Thu Jan 26 13:17:50 2017 +0100 PMR Workspaces window: sort and resize our tree view widget whenever needed and optimally. commit dfc482bb639ec6f82120f4b49060fc017d8eddc2 Merge: a554ca39d b491ae069 Author: Alan Garny Date: Thu Jan 26 12:54:20 2017 +0100 Merge branch '\''master'\'' into issue1141. commit b491ae0691f52bebfdbdcf4f1275e8163e9d3b96 Merge: 9436fe4c2 dd3395ccb Author: Alan Garny Date: Thu Jan 26 12:52:05 2017 +0100 Access a simulation'\''s file name (closes #1196). commit 9436fe4c25e02b5f2b48fe521d58119773420d07 Author: Alan Garny Date: Thu Jan 26 12:51:29 2017 +0100 Some minor cleaning up [ci skip]. commit b7aa01e9546a5fd5af170868c590b9588aab6434 Merge: 3765796b5 6c599cedb Author: Alan Garny Date: Thu Jan 26 12:48:32 2017 +0100 Refactor code to find a simulation'\''s solver interface (closes #1198). commit a554ca39dbfb05110a7918288b47cdb9b5e55119 Author: Alan Garny Date: Thu Jan 26 11:54:16 2017 +0100 PMR Workspaces window: make sure that things are properly sorted in our tree view. commit 9b81fccbf2eb4b6a5dce50bc7967a5351142398c Merge: b1fc3940c 6c599cedb Author: David Brooks Date: Thu Jan 26 23:15:10 2017 +1300 Merge branch '\''ssv_solverinterface'\'' into pythonplugin commit b1fc3940c00733b759f890fe7d37644843e3bc48 Merge: 9ffd1191a 6f4e24451 Author: David Brooks Date: Thu Jan 26 23:14:59 2017 +1300 Merge branch '\''ssv_runcrash'\'' into pythonplugin commit 9ffd1191a869f7cef750e4dc02d7ff1133b0aff9 Merge: 3f6e42149 dd3395ccb Author: David Brooks Date: Thu Jan 26 23:14:40 2017 +1300 Merge branch '\''ssv_filename'\'' into pythonplugin commit 3f6e4214916da56cbb09aa08710f07f4e828bfd8 Merge: da00e951d 3765796b5 Author: David Brooks Date: Thu Jan 26 23:12:42 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 6f4e24451e74f986bb9553decec2a7235240d1ef Merge: 53bb0d148 3765796b5 Author: David Brooks Date: Thu Jan 26 23:12:14 2017 +1300 Merge branch '\''master'\'' into ssv_runcrash commit dd3395ccb4d3f85ceedd74b6fbf9f20a4cff1f56 Merge: a0cf897b7 3765796b5 Author: David Brooks Date: Thu Jan 26 23:11:41 2017 +1300 Merge branch '\''master'\'' into ssv_filename commit 6c599cedbb95184f76706f965f71a1ee7a6bbb74 Merge: ef0d4ebd6 3765796b5 Author: David Brooks Date: Thu Jan 26 23:11:10 2017 +1300 Merge branch '\''master'\'' into ssv_solverinterface commit ef0d4ebd64bd65b30a0b3cc3e33eda07a7e8d8c9 Author: David Brooks Date: Thu Jan 26 23:08:47 2017 +1300 Minor code tweaks (#1198). commit a0cf897b754197ee86eb32cb4666090986abb110 Author: David Brooks Date: Thu Jan 26 22:50:17 2017 +1300 Tweak code style (#1196). commit acabf9a2dd4517d42b201b28ec880fe57ff0e653 Author: Alan Garny Date: Thu Jan 26 10:38:09 2017 +0100 PMR Workspaces window: now properly remove items that have been deleted. commit a1168201d7525099a91ff912aeb44ecccb306435 Author: Alan Garny Date: Thu Jan 26 10:21:04 2017 +0100 Some minor cleaning up. commit edddb3cfeca7a0945962c1ca112a646c850ae119 Merge: eaa7d4b30 3765796b5 Author: Alan Garny Date: Thu Jan 26 09:52:12 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 3765796b50c830532340c3e7f672e48047cb2eae Author: Alan Garny Date: Thu Jan 26 09:21:38 2017 +0100 Travis CI: trying to enforce the use of Qt 5.6.2 on macOS. commit ad4b7865bb8f6ff0289bc0aad16f9ce381e77591 Author: David Brooks Date: Thu Jan 26 20:50:43 2017 +1300 Minor tweaks to code (#1196). commit da00e951d4385c26478abbfe5a6845adfa82d0a4 Author: David Brooks Date: Thu Jan 26 20:03:13 2017 +1300 Update OpenSSL to version 1.0.2j (#1113). commit bfbc71c2d4760d0c7e876d01fa44cde87365fbe4 Author: David Brooks Date: Thu Jan 26 15:42:15 2017 +1300 Minor code tidy (#1085). commit deb2936ce87ee7ffacad2d9df0ea27fd297afe3e Author: David Brooks Date: Thu Jan 26 15:38:05 2017 +1300 Delete the correct PythonQt manager (#1085). commit 930a0580df19481163d7ff50954feb3a5cbcf821 Author: David Brooks Date: Thu Jan 26 15:23:05 2017 +1300 Make data storage and simulation classes available to Python via PythonQt wrappers (#1085). This requires wrapped classes to be QObjects with wrapped methods exposed as public slots and class names specified in full. commit 8f06db8c465b5ed5198017cb123db5c5c56c3c1a Author: David Brooks Date: Thu Jan 26 15:05:17 2017 +1300 Use a `DataStoreArray` class to manage numeric arrays (#1085). commit af236438028c038d9e45d087772c3064801dc871 Author: David Brooks Date: Thu Jan 26 14:48:33 2017 +1300 Upgrade zlib to version 1.2.11 (#1193). commit eaef17b9d8708a2c30cb66ed1c09a82e7efc08fe Merge: bdb188d31 53bb0d148 Author: David Brooks Date: Thu Jan 26 13:59:01 2017 +1300 Merge branch '\''ssv_runcrash'\'' into pythonplugin commit bdb188d31b3d88b805d79dd251cee7854b317a4d Merge: c50319769 916f4b130 Author: David Brooks Date: Thu Jan 26 13:58:50 2017 +1300 Merge branch '\''ssv_solverinterface'\'' into pythonplugin commit c50319769a687d89b2bf8f16169b386fe10da6f8 Merge: 5d5597584 caa708133 Author: David Brooks Date: Thu Jan 26 13:58:34 2017 +1300 Merge branch '\''ssv_filename'\'' into pythonplugin commit 53bb0d14840a69e977fb77b91f787b4953c729c1 Author: David Brooks Date: Thu Jan 26 13:15:13 2017 +1300 Check that we have a large enough data store and a valid solver before starting a simulation (#1200). commit 916f4b1308d308a324961e01e048ba7295862cfa Author: David Brooks Date: Thu Jan 26 12:50:46 2017 +1300 Refactor code to find a simulation'\''s solver interface (#1198). commit caa7081338c2f858ea3bdba1ee893e33bd337c4b Author: David Brooks Date: Thu Jan 26 12:35:49 2017 +1300 Add SingleCellViewSimulation::fileName() method (#1196). commit 5d55975847da70dd5a8b0065d0694e919e8ae0ed Merge: 9f23659d2 a4f3f2dc0 Author: David Brooks Date: Thu Jan 26 10:51:28 2017 +1300 Merge branch '\''master'\'' into pythonplugin commit 9f23659d2049a8d7314ca7d7e1b27378ea7f20c1 Author: David Brooks Date: Thu Jan 26 10:26:26 2017 +1300 Cleanup PythonQt *before* finalising Python in CTK Manager (#1085). commit ed4d048fba990123e73e31c9cbc5c46c6850c73e Author: David Brooks Date: Thu Jan 26 10:24:42 2017 +1300 Save and restore Python command history between sessions (#1085). commit c75c950a9335db2a58787c8b3024868c4df6ab04 Author: David Brooks Date: Thu Jan 26 10:23:18 2017 +1300 Get and set command history in a CTK window (#1085). commit 1e988dcc82825ac059f951c08b8f808a27323d20 Author: David Brooks Date: Thu Jan 26 10:20:36 2017 +1300 A PythonQt wrapper plugin for OpenCOR (#1085). commit eaa7d4b303e2a7c9a05bb603fe3139f8238da4d1 Author: Alan Garny Date: Wed Jan 25 18:45:04 2017 +0100 PMR Workspaces window: some work on staging/unstaging a file. commit fe128b5e134e51ff4f5d2026cfbf498297353c19 Author: Alan Garny Date: Wed Jan 25 18:39:56 2017 +0100 Some minor cleaning up. commit ad52b9169f33ab747027e30a695cea53f36d6821 Author: Alan Garny Date: Wed Jan 25 17:50:31 2017 +0100 PMR Workspaces window: some work on updating our GUI when folders/files are deleted. commit 9e81667130401ca6e6a40ffb54abc7c023604353 Author: Alan Garny Date: Wed Jan 25 17:34:28 2017 +0100 PMR Workspaces window: some work on updating our GUI when folders/files are deleted. commit e6a4c1c433cd9e0ab0fbf2a8bb7afccb562a9a97 Author: Alan Garny Date: Wed Jan 25 14:49:20 2017 +0100 Some minor cleaning up. commit e6ff1cee760a11ea8cd53f3e6ae1059b9c7c2caa Author: Alan Garny Date: Wed Jan 25 11:32:38 2017 +0100 PMR-related windows: don'\''t show information/warning messages at startup. commit d27a53c1adec29eb6e00407ea67e0f69292b52ac Author: Alan Garny Date: Wed Jan 25 11:31:31 2017 +0100 Some minor cleaning up. commit 3088fb606cd6d8265a240ac3ba28a7155cef8695 Author: Alan Garny Date: Wed Jan 25 10:58:35 2017 +0100 PMR window: don'\''t expand an exposure that is being cloned. commit 12d5f3a0ffbbd68bdaf0c9e7e855ea339bbf203a Author: Alan Garny Date: Wed Jan 25 10:53:21 2017 +0100 PMR support: make sure the workspace folder is properly tracked when cloning a workspace. commit 1501b3d17cb00614e1ef2d2441838b5b9aba707c Author: Alan Garny Date: Tue Jan 24 18:12:28 2017 +0100 PMR Workspaces window: don'\''t regenerate a file icon every time a workspace gets refreshed. commit 357fc8418a6bc14572a1af87994977366b830ebe Author: Alan Garny Date: Tue Jan 24 18:01:08 2017 +0100 PMR Workspaces window: don'\''t regenerate a file icon every time a workspace gets refreshed. commit cd0d2a3c6005abeb1f235d4d43ed1186b171db67 Author: Alan Garny Date: Tue Jan 24 17:48:59 2017 +0100 Some minor cleaning up. commit e6e9615580c3436e3d5707f0b558d017f99812ee Author: Alan Garny Date: Tue Jan 24 17:37:53 2017 +0100 PMR Workspaces window: don'\''t regenerate a workspace folder icon every time it gets refreshed. Note: we need to do the same for file icons… commit ab19b797d55738435c2f3de0cd75fbc7484d97a7 Author: Alan Garny Date: Tue Jan 24 17:11:46 2017 +0100 PMR Workspaces window: some work on updating the GUI to reflect changing file node states. Now update the icon (i.e. status) of the workspace folder. commit 6757f221adf64ff874292a698d2fa45549cd364b Author: Alan Garny Date: Tue Jan 24 16:33:11 2017 +0100 PMR Workspaces window: we want our timer to be active at all times, so that the status of a file can visually change whether OpenCOR is in the background or not. This is unlike for our FileManager class, for which there is no point to check things if OpenCOR is not active, etc. (see FileManager::startStopTimer()). commit efcbf406a5ce6cba99484124acc81dd29749f764 Author: Alan Garny Date: Tue Jan 24 16:28:29 2017 +0100 PMR Workspaces window: some work on updating the GUI to reflect changing file node states. commit 5ed7919b7bb81abd3bf8f6d9688c3f7896764bc0 Author: Alan Garny Date: Tue Jan 24 16:26:34 2017 +0100 PMR support: update the status of an existing workspace file node that we are trying to add. commit f9b225a3e2955092a4695d155ab7bca85b11ce38 Author: Alan Garny Date: Tue Jan 24 14:41:57 2017 +0100 Some minor cleaning up. commit a055ca200f7c0fe0f22c2fc410db828198181c87 Author: Alan Garny Date: Tue Jan 24 14:38:25 2017 +0100 PMR Workspaces window: make sure that a file node has a correct full name. commit 0c1d18152351807675d7ecefc1df1e523cff4751 Author: Alan Garny Date: Tue Jan 24 14:11:35 2017 +0100 Some minor cleaning up. commit 68a571f66ab0248d579fb188516c3ec933df0337 Author: Alan Garny Date: Tue Jan 24 14:11:23 2017 +0100 PMR Workspaces window: made sure that we do the right thing when a workspace has been cloned. commit c7c5a193303c9f76ad29534c441e178a57993805 Author: Alan Garny Date: Tue Jan 24 09:48:56 2017 +0100 Some minor cleaning up. commit 939e36e6b9d10d3d023a86c033a18b96c6cb63b7 Author: Alan Garny Date: Tue Jan 24 09:26:12 2017 +0100 PMR support: reuse a workspace'\''s file nodes rather than recreate them every time its status gets refreshed. Will need to handle the case of a file being deleted… commit 0d7902580b7564fe2d84f9cc48c95af72fa62cc6 Author: Alan Garny Date: Tue Jan 24 09:25:10 2017 +0100 Some minor cleaning up. commit 282e29d26323b081be41f72bc2357d4f54040f9d Author: Alan Garny Date: Tue Jan 24 09:13:47 2017 +0100 Some minor cleaning up. commit 41417a06f297451d154b5ebfbd16e44fe6ffe1a4 Author: Alan Garny Date: Tue Jan 24 09:12:59 2017 +0100 PMR Workspaces window: make sure that the Clone menu item is only available for non-cloned owned workspaces. commit 519172bdeb4464a270545d466423c497dc81f9e3 Author: Alan Garny Date: Mon Jan 23 20:51:31 2017 +0100 PMR support: make sure that a cloned workspace gets its status updated straightaway (rather than being updated by someone else, e.g. the PMR Workspaces window'\''s timer). commit f91696627cb637322600188b5ff863aacaa8a95d Author: Alan Garny Date: Mon Jan 23 20:47:52 2017 +0100 PMR support: make sure that a cloned workspace gets its status updated straightaway (rather than being updated by someone else, e.g. the PMR Workspaces window'\''s timer). commit 8f41578e9da625ef32a649141f73ceee9b51204d Author: Alan Garny Date: Mon Jan 23 20:45:52 2017 +0100 Some minor cleaning up. commit d2b09031de3b6f61b50dc8cf3d6da008936f1a72 Author: Alan Garny Date: Mon Jan 23 20:09:14 2017 +0100 Reverted commit db774aa (it prevented our cloned workspaces from being populated). commit bf972a1d5d5926a20cb4ebb7112c25fdbd9d65ce Author: Alan Garny Date: Mon Jan 23 19:31:59 2017 +0100 Some minor cleaning up. commit 76bac28e26469d72eea6430e78054c128f6f5437 Author: Alan Garny Date: Mon Jan 23 19:22:45 2017 +0100 Some minor cleaning up. commit db774aaaeb3839198a772b998f399c7e0f36814e Author: Alan Garny Date: Mon Jan 23 19:21:09 2017 +0100 Some minor cleaning up. commit eaed11ceae687e590793c8e065c50b96055b4a93 Author: Alan Garny Date: Mon Jan 23 19:12:10 2017 +0100 PMR Workspaces window: now clone a(n owned) workspace in the existing tree view folder (rather than creating a new one as used to be the case before). Note that although the code does the right thing, it will still probably crash OpenCOR since PmrWorkspace::refreshStatus() regularly recreates mRootFileNode… commit 39acb5498d1c9ca060983afe09e0682f46628a77 Author: Alan Garny Date: Mon Jan 23 18:52:35 2017 +0100 Some minor cleaning up. commit 9e8321394778479534f3b6af0b36b1af8a2ee991 Author: Alan Garny Date: Mon Jan 23 18:15:40 2017 +0100 Some minor cleaning up. commit 1a6582830c8183f1c4fb7a29f7dbaf42ea116962 Author: Alan Garny Date: Mon Jan 23 17:24:08 2017 +0100 Some minor cleaning up. commit e2eb542c3e0d400e37e9c49ca8755225be8cf03b Author: Alan Garny Date: Mon Jan 23 16:37:47 2017 +0100 Some minor cleaning up. commit b51d295028a61838b6d0816f2ef96bcbc509e7d5 Author: Alan Garny Date: Mon Jan 23 15:26:05 2017 +0100 PMR Workspaces window: rely on our global PMR Workspace manager to know when a workspace has been cloned or synchronized. Until now, we were relying on the PMR Web service, but that one is not global, meaning that if we clone a workspace from the PMR window, then the PMR Workspace window won’t know about it… that is, unless we rely on our global PMR Workspace manager… commit 7918fe71308458ac0167b0b3503f8c9596e4e15b Author: Alan Garny Date: Mon Jan 23 15:03:42 2017 +0100 Some minor cleaning up. commit b860767f83e846453611470d32e85bc3cdcc65fe Author: Alan Garny Date: Mon Jan 23 14:41:20 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 1f9bdef0af743f1ab895b6c125caeaeddf64ba13 Author: Alan Garny Date: Mon Jan 23 14:18:25 2017 +0100 PMR Web service: let people know when a workspace has been cloned. For some reasons, this wasn’t done while we do let people know when a workspace has been synchronised… commit a4267faecc12d02fbbfac38276693c23cac97122 Author: Alan Garny Date: Mon Jan 23 13:57:53 2017 +0100 PMR Workspaces window: some minor refactoring. commit a4f3f2dc07bc0e5230d19eb2ab919232bf760974 Author: Alan Garny Date: Mon Jan 23 13:38:05 2017 +0100 Slight update to tour developer documentation [ci skip]. commit 7b9d7feebba45580fa0b5b4c4356080db3bce0d4 Merge: 277c55a8e f95d37b72 Author: Alan Garny Date: Mon Jan 23 13:28:26 2017 +0100 Merge branch '\''master'\'' into issue1141. commit f95d37b72aeedd21992c3652e84a0ade5080a0e2 Author: Alan Garny Date: Mon Jan 23 13:26:12 2017 +0100 KaTeX: upgraded to version 0.7.1 (closes #1195). commit 277c55a8eb7c404dab55e3a9d4ca5c1b0cf75d1d Author: Alan Garny Date: Sat Jan 21 19:04:41 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 38ba67dce40730bc4f8bdd5ea6a493074f97ec78 Author: Alan Garny Date: Sat Jan 21 19:03:08 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 5c58dbadb4a0c205271d259621e492adc2006bf3 Author: Alan Garny Date: Sat Jan 21 18:59:32 2017 +0100 Some minor cleaning up. commit b4931b595636993daf442d36e23db363ad3c84d5 Author: Alan Garny Date: Sat Jan 21 17:40:11 2017 +0100 PMR Workspaces window: some minor refactoring. commit b49ae4ef7a52f0e10fdb26064d72eacff6eb1ef3 Author: Alan Garny Date: Sat Jan 21 15:48:52 2017 +0100 PMR Workspaces window: removed our support of the File Handling interface. Indeed, we don’t automatically refresh the active workspace, but all of them. So, we don’t (or shouldn’t, at this stage) need to check whether a file has been reloaded or renamed. commit 06fca1e77fbaf85098807db5a7bb6ad989daf632 Author: Alan Garny Date: Sat Jan 21 14:50:13 2017 +0100 Some minor cleaning up. commit 61735d0dab7268169be4f98e642b5276f296bb4d Author: Alan Garny Date: Sat Jan 21 14:49:51 2017 +0100 PMR Workspaces window: some work on staging/unstaging a file. Things crash when trying to show the context menu since we are refreshing our workspaces every second, resulting in file node information being deleted and recreated… commit bb238c779b3249283e7e5fc0c8714df57477ce45 Author: Alan Garny Date: Sat Jan 21 11:48:49 2017 +0100 Some minor cleaning up. commit 5d9bb79678590c2ad6d242d3ee41579b59119c5c Author: Alan Garny Date: Fri Jan 20 15:42:07 2017 +0100 Windows doesn'\''t accept '\''?'\'' In a file name... commit d102c84555f1ce2c0c6b0ef4653268fa5a2cfaad Author: Alan Garny Date: Fri Jan 20 15:37:20 2017 +0100 PMR Workspaces window: keep track of an item'\''s file node, if any. commit 5c6b0c5dd899ee7d31d3daab89dd105d0d3a4e2a Author: Alan Garny Date: Fri Jan 20 15:27:06 2017 +0100 PMR support: fixed another memory leak. commit 4d16d7fa446ef02841cb283bf7a8d3297aae5c15 Author: Alan Garny Date: Fri Jan 20 15:21:28 2017 +0100 Some minor cleaning up. commit 763e4ddd1e641cdbae0fa88f8c02d35600e7ac61 Author: Alan Garny Date: Fri Jan 20 13:32:53 2017 +0100 Some minor cleaning up. commit 13a91eca05ff811705a305d2223b6113cc2a2318 Author: Alan Garny Date: Fri Jan 20 13:20:25 2017 +0100 PMR Workspaces window: can now show the overall status of a workspace. commit a2cc761a62688f5021861831804b2f0d3d8784dc Author: Alan Garny Date: Fri Jan 20 09:46:32 2017 +0100 Some minor cleaning up. commit 118c87ec56eaad720efdcb8908e23e7b5ab40f67 Author: Alan Garny Date: Thu Jan 19 18:48:02 2017 +0100 PMR Workspaces window: can now show some information about a given workspace. commit 3e3b731e84f60618251fef3f8a04fb22ea71ce9b Author: Alan Garny Date: Thu Jan 19 18:35:26 2017 +0100 Some minor cleaning up. commit 1366664ef90c9ab31ddc44dd7cfba81fd105ab4c Author: Alan Garny Date: Thu Jan 19 18:26:05 2017 +0100 Some minor cleaning up. commit f9607d58712d8672f33ae4487b91893f82a8d189 Author: Alan Garny Date: Thu Jan 19 18:20:55 2017 +0100 PMR Workspaces window: some work on showing some information about a given workspace. commit 30de0f04b40dc8d2c0e1ce47eb8f582c7947eaba Author: Alan Garny Date: Thu Jan 19 18:18:58 2017 +0100 Some minor cleaning up. commit d87c3c2d0984fea11b16cb4a62fca158ebf13fdc Author: Alan Garny Date: Thu Jan 19 18:15:29 2017 +0100 Some minor cleaning up. commit 7c213ca69d3529167198ad3e5b8aefb69c1f26a7 Author: Alan Garny Date: Thu Jan 19 17:26:04 2017 +0100 PMR Workspaces window: can show a workspace on the computer, as well as copy its path to the clipboard. commit e6f208aabf7f11d984c2bca6f348c0128d39ae11 Author: Alan Garny Date: Thu Jan 19 17:12:36 2017 +0100 PMR Workspaces window: clear our tree view model as late as possible. This is to avoid our tree view from looking empty for a split second when reloading our list of workspaces. commit 4ddb7342e4111c6a3b836587f98865f97d849a5e Author: Alan Garny Date: Thu Jan 19 16:58:48 2017 +0100 PMR and PMR Workspaces windows: added an icon for our clone action. commit 84c14c8a272b15dd0fa9520463bda47f120f13fa Author: Alan Garny Date: Thu Jan 19 16:43:05 2017 +0100 Some minor cleaning up. commit 6f291feed89d446f9636c49843c522598190891a Author: Alan Garny Date: Thu Jan 19 16:24:34 2017 +0100 Some minor GUI improvements. commit 5db582e81da960c04b5bc293f61f21a2a5ea3625 Author: Alan Garny Date: Thu Jan 19 16:20:01 2017 +0100 Some minor cleaning up. commit 9f48bdcd1c64c269407b6ca2ed83c482d613d614 Author: Alan Garny Date: Thu Jan 19 16:01:02 2017 +0100 PMR Workspaces window: now show the Git status of a file. commit 160147f43837a21097fac55cb20a6538613d5a98 Author: Alan Garny Date: Thu Jan 19 15:11:35 2017 +0100 Some minor cleaning up. commit c38e326dff4544533d250ebbde39c82f94526d5b Author: Alan Garny Date: Thu Jan 19 14:55:44 2017 +0100 Some minor cleaning up. commit 2ffd3d69bde5b2342694b1877dae4f5344d2c8e2 Author: Alan Garny Date: Thu Jan 19 14:36:53 2017 +0100 PMR support: some cleaning up. commit d57dd1bd062fb3f56b331b08c67c79d1cad7f0d0 Author: Alan Garny Date: Thu Jan 19 12:54:49 2017 +0100 Some minor cleaning up. commit fc44ee67d72d50852e8294b89b8dc20df873e8ca Author: Alan Garny Date: Thu Jan 19 11:47:23 2017 +0100 PMR support: fixed a memory leak. commit f2d3e88d320dde4611b79f80a9e069e0a77743a6 Author: Alan Garny Date: Thu Jan 19 11:44:37 2017 +0100 PMR Workspaces window: some work on refreshing a given workspace. commit ced80b70a01c613fc921a84ef7e6b10f421272e0 Author: Alan Garny Date: Thu Jan 19 11:35:28 2017 +0100 PMR Workspaces window: some minor refactoring. commit e8a85fdee2b9f3b8c7b9940433fb7aee1d1fbd0b Author: Alan Garny Date: Thu Jan 19 11:32:36 2017 +0100 Some minor cleaning up. commit 76d65187b97af384d4a97a39207ca040b7b16eec Author: Alan Garny Date: Thu Jan 19 11:31:44 2017 +0100 Some minor cleaning up. commit 635124ea735aca22526ab3294a89b3b142c1c489 Author: Alan Garny Date: Thu Jan 19 11:13:34 2017 +0100 Some minor cleaning up. commit ae77b6e167ee618a26f56019477533dcd03470d3 Author: Alan Garny Date: Thu Jan 19 11:04:38 2017 +0100 PMR Workspaces window: check our timer when updating our GUI. commit e90326e6b72e5f7c902ef6e366e160f98ff96c40 Author: Alan Garny Date: Thu Jan 19 11:04:12 2017 +0100 Some minor cleaning up. commit b3c9ad95bab481073b63f486185af2c8e3ef53fb Author: Alan Garny Date: Thu Jan 19 10:04:16 2017 +0100 PMR Workspaces window: some cleaning up. commit 7e787ee717d6c8c9be71c19d8701e7a8de4ac223 Author: Alan Garny Date: Thu Jan 19 10:00:32 2017 +0100 PMR Workspaces window: can now clone an owned workspace. It’s not perfect though. For example, to clone an owned workspace will result in a new entry in the tree view widget. That entry will (rightly) disappear if we close and reopen OpenCOR. commit 331898c8077b22c1eccf3e4564e5f78ff9438751 Author: Alan Garny Date: Wed Jan 18 18:30:06 2017 +0100 Some minor cleaning up. commit 4b4566044b53d64581db07c3a8769a9d8d0ef39a Author: Alan Garny Date: Wed Jan 18 18:29:32 2017 +0100 Some minor cleaning up. commit 431578ca2d3399d82028b3d47b811a9c0fa91018 Author: Alan Garny Date: Wed Jan 18 18:16:16 2017 +0100 PMR Workspaces window: added a cloning action. commit 225b7cfc24e52bab38a574df958b74f9660f0ca8 Author: Alan Garny Date: Wed Jan 18 18:15:41 2017 +0100 Some minor cleaning up. commit e4c8d81227f25d811ff59457346d8a57ea4425fb Author: Alan Garny Date: Wed Jan 18 18:09:44 2017 +0100 Some minor cleaning up. commit 9fa60918b120317c0956d2baefaf2e7548d39277 Author: Alan Garny Date: Wed Jan 18 17:58:58 2017 +0100 Some minor cleaning up. commit 4580da7418659ae4d6a96a79cd7c6091d20b29db Author: Alan Garny Date: Wed Jan 18 17:51:35 2017 +0100 PMR Workspaces window: add a workspace in the right place in our tree view widget. commit bda9a1289bf998d1a376596a829147fcc90429dc Author: Alan Garny Date: Wed Jan 18 17:43:12 2017 +0100 PMR Workspaces window: now add to our GUI a workspace that has been cloned from the PMR window. commit b1601086536cca157b06c2ce20a350c533debfa1 Author: Alan Garny Date: Wed Jan 18 17:42:12 2017 +0100 Some minor cleaning up. commit 5ee923e0dd23efde44c8af5674abf7b5cdec93d8 Author: Alan Garny Date: Wed Jan 18 17:41:30 2017 +0100 Some minor cleaning up. commit cb226af2e1e7fd30bf135d5b28fe776a0fe06fd0 Author: Alan Garny Date: Wed Jan 18 17:31:25 2017 +0100 PMR Workspaces window: some minor refactoring. commit 8925d1cdc379fbbd95c099c982ac51c483e29b96 Author: Alan Garny Date: Wed Jan 18 16:57:17 2017 +0100 PMR window: got rid of mShowHideExposureFilesAction. Indeed, anyone using a tree view should know that they can expand folder items… commit c16cc3c2f6c9158cee8d5106bd365b2866522be9 Author: Alan Garny Date: Wed Jan 18 16:40:47 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 0557e06dc1fd7aa857144ff70b70ef70a79ec86e Author: Alan Garny Date: Wed Jan 18 14:27:32 2017 +0100 PMR Workspaces window: some minor cleaning up. commit f26a230f9dadbdf3686e4daf73d2266e8a2bb365 Author: Alan Garny Date: Wed Jan 18 13:44:54 2017 +0100 PMR Workspaces window: updated our startStopTimer() method. commit 9b7061f7382c852e0599c738f5d23d870aaf4b39 Author: Alan Garny Date: Wed Jan 18 13:38:42 2017 +0100 PMR Workspaces window: some minor refactoring. commit b8705b18293e534372688610df7439d6efcb2d44 Author: Alan Garny Date: Wed Jan 18 13:21:01 2017 +0100 PMR Workspaces window: some minor refactoring. commit 83c68f9d0c2c4961311b596fa432ea1e41188fc3 Author: Alan Garny Date: Wed Jan 18 11:30:37 2017 +0100 PMR Workspaces window: replaced the Plus icon (for creating a new workspace) with a Folder icon overlaid with a Plus icon. commit 0be5f2a337a0ee8201d1c2881b6777dda0982f9f Author: Alan Garny Date: Wed Jan 18 10:37:28 2017 +0100 Some minor GUI improvements. commit 831e17c6949cfb83292da80582b469a72d06f307 Author: Alan Garny Date: Tue Jan 17 19:08:53 2017 +0100 Improved our creation of overplayed icons. commit e8c97c976319ef4d88c8635b2fa17f63d300f81e Author: Alan Garny Date: Tue Jan 17 19:02:50 2017 +0100 Some minor cleaning up. commit 3b7a4f48aa5b3d12ea04a15da34e48568a7242ba Author: Alan Garny Date: Tue Jan 17 18:55:57 2017 +0100 Improved the way we use the Core::overlayedIcon() method. commit 607fb1222dccf96fe5906511eda27e15791f592e Author: Alan Garny Date: Tue Jan 17 18:11:10 2017 +0100 Some minor cleaning up. commit f062928c996f0b24d8647f129c8e1e5ab37d8b6e Merge: 2624d0464 cd50dbef0 Author: Alan Garny Date: Tue Jan 17 18:06:28 2017 +0100 Merge branch '\''master'\'' into issue1141. commit cd50dbef02cd21aa0f03e6061cd034eaacaf8751 Author: Alan Garny Date: Tue Jan 17 18:06:08 2017 +0100 Some minor cleaning up. commit 2624d046426bc7bb00b3585eb64551dae8a9ed73 Author: Alan Garny Date: Tue Jan 17 17:41:49 2017 +0100 PMR Workspaces window: now show the correct expanded folder icon for an owned workspace. commit a3863e349594427147824b2d742f142c256fb3c1 Author: Alan Garny Date: Tue Jan 17 16:57:24 2017 +0100 Get the folder icon we are after on Windows. commit 43032a8535848b752c2ada369133359572ac01a5 Author: Alan Garny Date: Mon Jan 16 19:22:57 2017 +0100 PMR Workspaces window: make sure that the context menu is indeed context dependent. commit 4edf1123c1b36bd5c291261c380690515e015d76 Author: Alan Garny Date: Mon Jan 16 19:22:28 2017 +0100 Some minor cleaning up. commit fec924a26509c81564c35af8932d05da89cfb9d3 Author: Alan Garny Date: Mon Jan 16 19:15:43 2017 +0100 PMR Workspaces window: can now open one or several workspace files using the keyboard. commit 652f23140395d38660f583449377929f5c1190fa Author: Alan Garny Date: Mon Jan 16 19:15:20 2017 +0100 Some minor cleaning up. commit 4e41bf4defc37d452886646d1f61fa9932b50f06 Author: Alan Garny Date: Mon Jan 16 19:05:21 2017 +0100 PMR Workspaces window: can now open a workspace file by double clicking on it. commit 82c9cfdf47f9bae023a2d9e941a9a2c17a3d9ff7 Author: Alan Garny Date: Mon Jan 16 19:04:59 2017 +0100 Some minor cleaning up. commit 137f8230101c22f478bea1102cb8f8e401562e58 Author: Alan Garny Date: Mon Jan 16 18:49:59 2017 +0100 Fixed a small problem with PmrWorkspaceFileNode::addChild(). commit 6a37d8fed4449835e3ca07339551f65c5442ac8b Author: Alan Garny Date: Mon Jan 16 18:48:51 2017 +0100 Some minor cleaning up. commit 2367c6914eed1bbfae60eac5f42896032cc29612 Author: Alan Garny Date: Mon Jan 16 18:48:38 2017 +0100 Some minor cleaning up. commit 8b1a301342c8f7e1a6abdca4d179669206dd28e6 Author: Alan Garny Date: Mon Jan 16 17:37:26 2017 +0100 Some minor cleaning up. commit 9ab122c5f58c2c6dad7abc69dcfa63f8960377e1 Author: Alan Garny Date: Mon Jan 16 17:35:07 2017 +0100 PMR Workspaces window: now fully populate a workspace. However, we need to ‘fix’ things when a workspace contains folders/sub-folders. commit 207cfa2ed10cba415083755e32d195a01d1c44ab Merge: c08600bf4 981921011 Author: Alan Garny Date: Mon Jan 16 15:54:54 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 9819210112b6a5ddc69397c60f4e8000363c8eea Merge: 07ab47cba 8c4a74ea5 Author: Alan Garny Date: Mon Jan 16 15:53:24 2017 +0100 zlib: upgraded to version 1.2.11 (closes #1193). commit 8c4a74ea52b8ab667c688f9ff013c8b4a3368e31 Author: Alan Garny Date: Mon Jan 16 15:18:30 2017 +0100 zlib: some work on upgrading to version 1.2.11 (#1193). commit b09f5121b6ea06c5d01754245b464769f1cab63f Author: Alan Garny Date: Mon Jan 16 15:11:00 2017 +0100 zlib: some work on upgrading to version 1.2.11 (#1193). commit 46dcbdc7ac69f29d30f0d215a62cd809ea5bd7b3 Author: Alan Garny Date: Mon Jan 16 15:07:44 2017 +0100 zlib: some work on upgrading to version 1.2.11 (#1193). commit c08600bf4c37f4ece23a97d095005dd3462cd105 Author: Alan Garny Date: Mon Jan 16 14:37:23 2017 +0100 Now differentiate '\''normal'\'' workspaces from owned ones. Slight improvement for Windows. commit a926aca4c07c15da61833a5519c61f9a03f18cb0 Author: Alan Garny Date: Mon Jan 16 14:35:12 2017 +0100 Now differentiate '\''normal'\'' workspaces from owned ones. Slight improvement for Windows. commit 224dc90a6dff4417b271e031a1cf309153268e8a Author: Alan Garny Date: Mon Jan 16 14:34:45 2017 +0100 Now differentiate '\''normal'\'' workspaces from owned ones. Slight improvement for Windows. commit adaf029cd2864fe899b00b14ff352516d060386c Author: Alan Garny Date: Mon Jan 16 14:20:36 2017 +0100 Now differentiate '\''normal'\'' workspaces from owned ones. commit 87b49e30c3afd1854922726c020e9e24b5872eab Author: Alan Garny Date: Mon Jan 16 14:20:02 2017 +0100 Some minor cleaning up. commit 9b299e5de5566490932a1e30f4d1438f2ed66677 Author: Alan Garny Date: Mon Jan 16 14:19:44 2017 +0100 Added new signatures for our Core overlayedIcon() method. commit c3994e6fcfe8b949432576ecb48195d58afac7bf Author: Alan Garny Date: Sun Jan 15 10:07:27 2017 +0100 PMR window: can now show/hide exposure files from the context menu. commit e063bc5b9ceaf19f31dffca7436d6fdf027e136b Author: Alan Garny Date: Sat Jan 14 00:02:53 2017 +0100 File Browser window: use a more suitable Home icon. The one we were using was actually right, it’s just that since we now use system folder icons, the Home icon looked ‘wrong’ hence we now use a ‘proper’ Home icon. commit 02710d07d830dccd3052c78fb12a1db2eb544d56 Author: Alan Garny Date: Fri Jan 13 23:51:45 2017 +0100 File Organiser window: make sure that our New Folder icon looks right on Windows. commit 7ef4bb44baaa443f880ff77429902c20af011ee6 Author: Alan Garny Date: Fri Jan 13 23:51:07 2017 +0100 Some minor cleaning up and an additional signature for iconDataUri(). commit c6295188c72ca4a56a12bdea61eb930c7a586daa Author: Alan Garny Date: Fri Jan 13 20:40:46 2017 +0100 File Organiser window: created a "new folder" icon based on the system "folder" icon. commit 245d29ebf980d1081f15f37c651b6d80010fcd71 Author: Alan Garny Date: Fri Jan 13 20:37:14 2017 +0100 Some minor cleaning up [ci skip]. commit 280c50fa173c9fc655156a7736d43b97ac3e25c4 Author: Alan Garny Date: Fri Jan 13 19:40:31 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit e7dda849f8ac0ec4b02c42ecd6bc266159938c85 Author: Alan Garny Date: Fri Jan 13 19:37:38 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit e855ee158a8da7a60fa0c5e2c5ccc49dfd130873 Author: Alan Garny Date: Fri Jan 13 19:37:18 2017 +0100 Some minor cleaning up. commit a734491adb32fb449ab83ae74551dea108b88816 Author: Alan Garny Date: Fri Jan 13 19:37:01 2017 +0100 PMR window: allow one or several items to be viewed in PMR. commit b06fd819f7e5025c15b2b97cc08242291c83b29d Author: Alan Garny Date: Fri Jan 13 19:26:51 2017 +0100 PMR window: allow one or several exposure files to be opened by pressing the RETURN key. commit c61c378347fc8aafb94c53edda3bef40603dd9ef Author: Alan Garny Date: Fri Jan 13 19:23:22 2017 +0100 File Organiser window: some minor cleaning up. commit c19807fc0442197ea1f721e7d6905fb86e7e3f63 Author: Alan Garny Date: Fri Jan 13 19:07:07 2017 +0100 File Organiser window: some minor refactoring. commit 2a97205278687df8494240995e5406fd6082664b Author: Alan Garny Date: Fri Jan 13 18:54:36 2017 +0100 File Organiser window: some minor refactoring. commit aac37515a24e069395c533efdfc6b71bb1377caa Merge: 06251d941 07ab47cba Author: Alan Garny Date: Fri Jan 13 18:32:39 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 07ab47cbafdc85fdf11e99036bd60db074ae6ae4 Author: Alan Garny Date: Fri Jan 13 18:32:18 2017 +0100 File Organiser window: make use of QFileIconProvider [ci skip]. commit 06251d9416489b457dc3523b2738d0e60b296c93 Author: Alan Garny Date: Fri Jan 13 17:37:11 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 197d5240004599328e8a607f56c015f7b04988b4 Author: Alan Garny Date: Fri Jan 13 17:24:52 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 8d4e29d520b50837d1d9b668152851d68815a343 Author: Alan Garny Date: Fri Jan 13 17:08:54 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. To clear our model just before (re)populating it is critical since before that we do some stuff with our PMR service that may require emitting signals. In other words, to clear our model as we used to resulted in our tree view showing up as empty for a split second when refreshing our workspaces. commit 1e8f8c73e2b6910afeed3214f0c003c1056c7dbf Author: Alan Garny Date: Fri Jan 13 17:04:05 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 5ae91f6d6e6f7be064766cb0df3fd7a3270105ba Author: Alan Garny Date: Fri Jan 13 16:37:55 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 65d027af9080c6fa124b5e97e4516852a2e94c62 Author: Alan Garny Date: Fri Jan 13 16:37:44 2017 +0100 Some minor cleaning up. commit 44e86b17924df3addcc3663331dfda2dc40c69f0 Author: Alan Garny Date: Fri Jan 13 16:37:30 2017 +0100 Some minor cleaning up. commit 21d196adb4a6cd1ebcc1e900ac77e4a9c79f0b3f Author: Alan Garny Date: Fri Jan 13 16:36:36 2017 +0100 Some minor refactoring. commit 4d96987178f54c0f55ff88963cc6e1901cfb5e80 Author: Alan Garny Date: Fri Jan 13 16:14:32 2017 +0100 PMR-related windows: account for commit 55ec524. commit 55ec5242902aae2e667b75ef372cf25eb80bd896 Merge: 936f899ae ded56dc5c Author: Alan Garny Date: Fri Jan 13 16:07:17 2017 +0100 Merge branch '\''master'\'' into issue1141. commit ded56dc5c8704f71105f66fede4a4b1e5e2dcee6 Author: Alan Garny Date: Fri Jan 13 16:06:36 2017 +0100 Revert "Tree view widget: some minor GUI improvements [ci skip]." This reverts commit 373221e3df5b24228d929b2ab1ef29f045a6d838. Indeed, this was causing the font size of headers to be slightly bigger…!? commit 936f899aeafdcdf381eb6b73066bd082d02e52cc Author: Alan Garny Date: Fri Jan 13 15:46:26 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 20a3a3cedb0eaae4c1c9956c317759c0e9da58fa Author: Alan Garny Date: Fri Jan 13 15:44:24 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 44d884d934ff9536749bbbf4d1ca8b56d472a668 Author: Alan Garny Date: Fri Jan 13 15:35:53 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 4f22171cee7410bd95f1d02a6cd0bafc0d7c27cf Author: Alan Garny Date: Fri Jan 13 15:15:45 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 5ca324247b43f646c39166e89457b043179c4d57 Author: Alan Garny Date: Fri Jan 13 15:07:21 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 945408f33fd97eb9a62ec2cbdc7dcf4891a9a83d Author: Alan Garny Date: Fri Jan 13 14:52:12 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit be094d2176040e2146a1282d3104d9bb6e3a0fe8 Author: Alan Garny Date: Fri Jan 13 14:24:25 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit d53cad039770fa02c59d524ae4e7ff2fa53d44ee Author: Alan Garny Date: Fri Jan 13 13:59:05 2017 +0100 PMR Workspaces window: got rid of the HTML template. commit 1b4db185595477291d5f9de879a81c4d8c6e738a Author: Alan Garny Date: Fri Jan 13 13:29:16 2017 +0100 PMR Workspaces window: show context-based user messages. commit aacb4dc08f2a65a91a7f4e4fef029bd4e65686d1 Author: Alan Garny Date: Fri Jan 13 12:38:18 2017 +0100 PMR Workspaces window: starting to use both a UserMessageWidget and TreeViewWidget object. commit ca62cfeb01f47222ea7c1154e78cd97adc72f857 Author: Alan Garny Date: Fri Jan 13 11:52:46 2017 +0100 Some minor cleaning up. commit ab159d45f871e46e154eb700f9fd409cfc5e5b70 Author: Alan Garny Date: Fri Jan 13 11:50:15 2017 +0100 PMR Workspaces window: started work on not using a Web viewer. commit 849cbeaf33a2a06278eec9cfbc1ba07bca3528ff Author: Alan Garny Date: Fri Jan 13 10:03:05 2017 +0100 Some minor cleaning up. commit 6f5d633f6dd79cdc9fb952bc23c8396a40a3fc51 Author: Alan Garny Date: Fri Jan 13 09:41:37 2017 +0100 PMR window: some improvements with regards to our context menu. commit 3b871974366cf75a7f69d8b3332202cf01cae2e9 Author: Alan Garny Date: Fri Jan 13 09:33:13 2017 +0100 PMR window: in fact, we don'\''t need a '\''fancy'\'' tool tip for exposures / exposure files. commit 5cb0761d712e29d58bff1a62feee277141f9f5d7 Author: Alan Garny Date: Thu Jan 12 18:59:03 2017 +0100 Some minor cleaning up. commit 91db036f510ff7d4e517f5f327fb0e2897b317a3 Merge: a9c030a58 f8f4c28e4 Author: Alan Garny Date: Thu Jan 12 18:47:25 2017 +0100 New PMR window (part of our work on issue #1141). commit f8f4c28e470c3d1ceafd9234b7b2541f0818dcee Merge: a690e1ba6 a9c030a58 Author: Alan Garny Date: Thu Jan 12 18:40:56 2017 +0100 Merge branch '\''issue1141'\'' into newpmrwindow commit a690e1ba6e62b4aec9db4a8d39bcacf84682e19f Author: Alan Garny Date: Thu Jan 12 18:36:29 2017 +0100 PMR window: nicely improved the layout of an item'\''s tool tip. commit 5c9dd9fb9a9dcbf7901ebd9765532aee8bce8cf6 Author: Alan Garny Date: Thu Jan 12 17:39:51 2017 +0100 PMR window: some minor cleaning up. commit 4c3cf7b0d51c5f5bade63fc8672e4f2f2a2d48d5 Author: Alan Garny Date: Thu Jan 12 17:33:36 2017 +0100 PMR window: make sure the focus is given back to the correct widget. commit e8382b3c6bc9015155e34df75c19b70ab63e4526 Author: Alan Garny Date: Thu Jan 12 16:56:50 2017 +0100 PMR window: can now copy a URL to the clipboard. commit a6e55e34b2345e6a994df11514afa58ed3b8c92a Author: Alan Garny Date: Thu Jan 12 16:30:03 2017 +0100 PMR window: improved the tool tip and context menu. commit 45f9e6db5abfebd3c6ea7f09de2dd7dbafb22f67 Author: Alan Garny Date: Thu Jan 12 15:54:12 2017 +0100 PMR window: some minor cleaning up. commit c5da92620e04011bbcf8bdc4b759f164e807df3f Merge: 662a35907 373221e3d Author: Alan Garny Date: Thu Jan 12 15:53:25 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit a9c030a5864672713b12670fe9439620cdc655cb Merge: f231b3626 373221e3d Author: Alan Garny Date: Thu Jan 12 15:52:55 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 373221e3df5b24228d929b2ab1ef29f045a6d838 Author: Alan Garny Date: Thu Jan 12 15:52:41 2017 +0100 Tree view widget: some minor GUI improvements [ci skip]. commit 662a3590760941ebd8fe66238f8328fa76967608 Author: Alan Garny Date: Thu Jan 12 15:19:37 2017 +0100 PMR window: some minor cleaning up. commit d82a350ab37c97b16b5875d176703d9f88547a83 Author: Alan Garny Date: Thu Jan 12 15:12:54 2017 +0100 PMR window: change the icon of an exposure based on whether its expanded/collapsed. commit e9ad24dfafb7ce552d0d63f8b80979c5cebb8a01 Author: Alan Garny Date: Thu Jan 12 14:51:37 2017 +0100 PMR window: some minor GUI improvement. commit f624c711656999c5d47275550549b46de7e61650 Merge: 30ba45790 30b3b29a9 Author: Alan Garny Date: Thu Jan 12 14:23:54 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit f231b3626706fedc889476a64095947f9e1f27a7 Merge: 898896046 30b3b29a9 Author: Alan Garny Date: Thu Jan 12 14:23:34 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 30b3b29a9e8dd4ad72ec26ecfd166ec22ba0e9a1 Author: Alan Garny Date: Thu Jan 12 11:35:10 2017 +0100 User message widget: fixed a small issue with our scaling [ci skip]. commit 8522d2ce8c8ba8f3a017db6f309c46204a428ebf Author: Alan Garny Date: Thu Jan 12 11:34:40 2017 +0100 CellML Annotation view: some minor GUI cleaning up [ci skip]. commit 30ba45790ce2fdeb033303e3e4730fd5f2b69c01 Author: Alan Garny Date: Thu Jan 12 10:43:29 2017 +0100 PMR window: improved our user messages. commit 9f1f7e9a0bd38685f550a7b826634cf3784c3a48 Merge: 5a6435a99 cb0ea3fa8 Author: Alan Garny Date: Thu Jan 12 10:17:58 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit 8988960460555d2ce785b5df268e5846ed481d2f Merge: 27d8aeb9e cb0ea3fa8 Author: Alan Garny Date: Thu Jan 12 10:17:34 2017 +0100 Merge branch '\''master'\'' into issue1141. commit cb0ea3fa857e1a3ad0ba89b5c1605a9abd61ffff Author: Alan Garny Date: Thu Jan 12 10:17:21 2017 +0100 User message widget: various improvements. commit 5a6435a99bf06597815cd134d024a28163dcca55 Author: Alan Garny Date: Thu Jan 12 09:33:47 2017 +0100 PMR window: various GUI improvements. commit 86df5295e7b34bfa76cfcc8243b59dd940899285 Author: Alan Garny Date: Thu Jan 12 08:56:44 2017 +0100 PMR window: slight GUI improvement. commit 567f3e90c8b3b1e14b2d999c85e473cdce1abe1c Author: Alan Garny Date: Wed Jan 11 20:16:33 2017 +0100 PMR window: can now show/hide/open exposure files. commit 88eedd37bc0822499351d97d6fbff8cc5207c945 Author: Alan Garny Date: Wed Jan 11 20:14:06 2017 +0100 Some minor cleaning up. commit 82e73bc817900a0b84122ee3726409ab2137889e Author: Alan Garny Date: Wed Jan 11 20:13:40 2017 +0100 Some minor cleaning up. commit 69dc2b4b6452fe47f66440df9650ec1d3c4f2a27 Merge: 0d3b9185e c40cab394 Author: Alan Garny Date: Wed Jan 11 20:02:38 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit 27d8aeb9e70888f796eccb4175810d485ab74818 Merge: 5dccdfa00 c40cab394 Author: Alan Garny Date: Wed Jan 11 20:02:19 2017 +0100 Merge branch '\''master'\'' into issue1141. commit c40cab39404ae0dfa8ef1ab692cf5cd38c2db950 Author: Alan Garny Date: Wed Jan 11 20:02:04 2017 +0100 Some minor cleaning up [ci skip]. commit 0d3b9185e239236d7fb68603b7fbb8989dcc8bcc Author: Alan Garny Date: Wed Jan 11 18:07:05 2017 +0100 PMR window: can now clone a workspace. commit cadd18925e38c868e8ca8af95b57483ec26c3bb8 Merge: e1967e6a5 a837df231 Author: Alan Garny Date: Wed Jan 11 18:03:17 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit 5dccdfa00405e2ed2ae52f1e5750acbe03b8c40b Merge: 9db422917 a837df231 Author: Alan Garny Date: Wed Jan 11 18:02:55 2017 +0100 Merge branch '\''master'\'' into issue1141. commit a837df231299441e1cd1dbba2e7745790e93b6e9 Author: Alan Garny Date: Wed Jan 11 18:02:32 2017 +0100 Some minor cleaning up [ci skip]. commit e1967e6a5c6e5a02bac2796e53a957340efb1425 Author: Alan Garny Date: Wed Jan 11 17:31:15 2017 +0100 PMR window: various GUI improvements. commit 43d144487dc39c840a4357c3d69301fb53d670df Merge: f2e55e6f5 eab7ea268 Author: Alan Garny Date: Wed Jan 11 17:12:24 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit 9db4229179b88e0934fe9fb8d3684730ec03d488 Merge: 725716599 eab7ea268 Author: Alan Garny Date: Wed Jan 11 17:11:33 2017 +0100 Merge branch '\''master'\'' into issue1141. commit eab7ea268c54306bb85bb44584a3aeb8de6a6fda Author: Alan Garny Date: Wed Jan 11 17:11:12 2017 +0100 Some minor cleaning up [ci skip]. commit f2e55e6f5511b231a7255f4cc9f6be29e0701952 Author: Alan Garny Date: Wed Jan 11 17:03:10 2017 +0100 PMR window: various GUI improvements and can now view an exposure in PMR. commit e616b4f5dbe392699684bf65a84d2ef391100bdc Author: Alan Garny Date: Wed Jan 11 15:37:09 2017 +0100 PMR window: some minor GUI improvement. commit 32a19abc44d980c26f65acc0bb8f2a2d4bf4318a Author: Alan Garny Date: Wed Jan 11 15:30:26 2017 +0100 PMR window: can now filter exposures. commit 48760d2dec32e3d3e400f139c6b57bfec16a0ee9 Author: Alan Garny Date: Wed Jan 11 14:51:29 2017 +0100 PMR window: started populating our list with exposures. commit 701cb6d5f91b84494940358e61a8a2f0639c2c60 Merge: 5dd9eaba1 3716e3adc Author: Alan Garny Date: Wed Jan 11 11:47:55 2017 +0100 Merge branch '\''master'\'' into newpmrwindow. commit 7257165998e5898eddd52bafc398a6af57f1af39 Merge: be1e7c9f5 3716e3adc Author: Alan Garny Date: Wed Jan 11 11:47:35 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 3716e3adccdaa97d6da36bff1df8f34a9fd54454 Author: Alan Garny Date: Wed Jan 11 11:47:22 2017 +0100 Some minor cleaning up [ci skip]. commit 5dd9eaba1a59be0de56d3fa7de0360e6ca7a7292 Author: Alan Garny Date: Wed Jan 11 11:15:14 2017 +0100 PMR window: started work on the tree view model. commit da4efaca74d8e34285ff4663bb6180692b67d23c Author: Alan Garny Date: Wed Jan 11 10:23:52 2017 +0100 PMR window: started work on using a tree view widget to list published exposures. commit 4d1e9c7ab14e9e870c8ee8f20b1d4f6925209475 Author: Alan Garny Date: Tue Jan 10 19:02:53 2017 +0100 PMR window: now use a QLabel to show a message. commit 2c740e48b45b1541816f1487499849800fefd4f8 Author: Alan Garny Date: Tue Jan 10 18:07:43 2017 +0100 PMR window: removed the direct dependency on WebViewerWidget. commit be1e7c9f500477d68e365adfac94ee7adfba9eb4 Merge: 50fdfccc0 ebcd042b9 Author: Alan Garny Date: Tue Jan 10 16:42:35 2017 +0100 Merge branch '\''master'\'' into issue1141. commit ebcd042b926b0e8eb9ef8cbc6abf60a522399526 Author: Alan Garny Date: Tue Jan 10 16:38:37 2017 +0100 PMR window: some minor cleaning up [ci skip]. commit c29374e14914627a77a25b9699f7e8a76f0cdabc Author: Alan Garny Date: Tue Jan 10 16:30:23 2017 +0100 Web viewer: some minor refactoring [ci skip]. commit df5ccad6ca4f887fd6cce1f41067f07655350a63 Author: Alan Garny Date: Tue Jan 10 16:29:22 2017 +0100 PMR window: some minor cleaning up [ci skip]. commit 50fdfccc0e06990ac163127601d4acf3a6ea4765 Merge: 4602f5be1 78b62a88b Author: Alan Garny Date: Tue Jan 10 16:21:50 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 78b62a88bad1b88158a7f2e75eb175be05263afc Author: Alan Garny Date: Tue Jan 10 16:20:59 2017 +0100 Improved the way we generate some data URI for an icon [ci skip]. commit 4a641592d73c1fac19458c791f36141221c77f9a Author: Alan Garny Date: Tue Jan 10 16:18:45 2017 +0100 Some minor improvements to the way we retrieve an empty directory [ci skip]. commit 4602f5be130cbd35da9181e84a183bd4f820d947 Author: Alan Garny Date: Tue Jan 10 16:10:39 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 507125aabb6ad58e93efd279acc247f0adfd44e8 Merge: be79d4b9f b0fe3ecf2 Author: Alan Garny Date: Tue Jan 10 16:10:02 2017 +0100 Merge branch '\''master'\'' into issue1141. commit b0fe3ecf2e28a1d4d1a44951123bee7ed25c6434 Author: Alan Garny Date: Tue Jan 10 15:47:02 2017 +0100 Some minor refactoring [ci skip]. commit 3d85d84f317cfa4fbca4f8ee54b2551ae085b908 Author: Alan Garny Date: Tue Jan 10 15:46:51 2017 +0100 Improved the way we check whether an Internet connection is available [ci skip]. commit 0f05554cabc7bf4b3f053e8ab129a807761b1024 Author: Alan Garny Date: Tue Jan 10 15:45:27 2017 +0100 Some minor refactoring and improvement of our get[Existing]Directory() method [ci skip]. commit a6823dd53486bd3159b6612490939ed57f4ae849 Author: Alan Garny Date: Tue Jan 10 15:44:27 2017 +0100 Some minor cleaning up [ci skip]. commit f557364389162e30094908e11203dcda647c13eb Author: Alan Garny Date: Tue Jan 10 15:43:59 2017 +0100 General: make sure that no debug output is generated by third party libraries [ci skip]. commit be79d4b9fb6c96329178e18ceffe57eea63c12c9 Author: Alan Garny Date: Tue Jan 10 11:53:09 2017 +0100 Keep track of what needs reviewing. commit 695197251adbd96361d610ce86908db2c58492f1 Merge: 1dce88fb0 0c3d4d849 Author: Alan Garny Date: Tue Jan 10 11:14:27 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 0c3d4d849a9794c0d93ce9bc03412ecb1c01f5fc Merge: 71a9cfca7 5f73262d2 Author: Alan Garny Date: Tue Jan 10 11:13:16 2017 +0100 libgit2: upgraded to version 0.25.1 (closes #1190). commit 5f73262d2efcd4ee01fbfecd6be5242ddbd928cf Author: Alan Garny Date: Tue Jan 10 10:43:28 2017 +0100 libgit2: some work on upgrading to version 0.25.1 (#1190). commit bf21ce6ca2dda17a92c1b269c5af30058990ad11 Author: Alan Garny Date: Tue Jan 10 10:36:33 2017 +0100 libgit2: some work on upgrading to version 0.25.1 (#1190). commit 52ca9cae49680437265a534448e0450c0e1534ff Author: Alan Garny Date: Tue Jan 10 10:24:39 2017 +0100 libgit2: some work on upgrading to version 0.25.1 (#1190). commit 71a9cfca7eb941e9d558e2ffda334f635acf2b46 Author: Alan Garny Date: Tue Jan 10 10:22:20 2017 +0100 KaTeX: upgraded to version 0.7.0 (closes #1189). commit 1dce88fb0804f90108f82a06379a3dff3ac33ae0 Author: Alan Garny Date: Mon Jan 9 14:38:03 2017 +0100 PMR Workspaces window: cleaned up the code for determining the tool tip to show. commit cd453bd1454dc77a313c8bdd97af9ca4c4e26f2a Author: Alan Garny Date: Mon Jan 9 14:37:04 2017 +0100 Some minor cleaning up. commit 8d8c790741c97f4cfd4a3da8ef5cdb0075b141b8 Author: Alan Garny Date: Mon Jan 9 14:27:34 2017 +0100 Some minor cleaning up. commit 10ed3a2ff549bad11b8aad9c677b94593a6f900f Author: Alan Garny Date: Mon Jan 9 11:58:30 2017 +0100 PMR Workspaces window: make sure that the CSS works for action buttons. commit ae70d7e3cad3eac0ca30064d32cec796f7415922 Author: Alan Garny Date: Mon Jan 9 10:47:33 2017 +0100 Some minor cleaning up. commit 8d9b2771b9df8a086b7b8999bd7fae0dc24865ec Author: Alan Garny Date: Fri Jan 6 14:03:12 2017 +0100 Some minor cleaning up. commit 2db329cf687842a4821c0ab3dae91f6840f5c41d Author: Alan Garny Date: Fri Jan 6 14:02:47 2017 +0100 Some minor cleaning up. commit 408dc837cb96da3da6b9e5fc875c2028a187cece Author: Alan Garny Date: Fri Jan 6 13:56:37 2017 +0100 Some minor cleaning up. commit 8c47fe2e5bab70753850e13c5a70efef90235e69 Author: Alan Garny Date: Fri Jan 6 13:09:33 2017 +0100 Some minor cleaning up. commit 81d33e6cf25c244bc46e3a495240774b2d36c65f Author: Alan Garny Date: Fri Jan 6 12:52:41 2017 +0100 Some minor cleaning up. commit 7d182e212906a708300808f7a958401c1a782cd6 Author: Alan Garny Date: Fri Jan 6 11:10:58 2017 +0100 PMR Workspaces window: some CSS improvements. commit 7ac0da82a3a8997ecf28284bcc0ef0b7f9ef9074 Author: Alan Garny Date: Fri Jan 6 11:06:56 2017 +0100 PMR Workspaces window: some CSS improvements. commit 95605a1afb023a9c4ec2d92b0f0d3b97780d3f2b Author: Alan Garny Date: Thu Jan 5 17:23:57 2017 +0100 PMR Workspaces window: our New and Reload action require to be authenticated to be enabled, so they should be disabled by default. commit 21515dd11ce62438a8fdf2b2316ffdc504f6f99f Merge: 656ff4cb0 17a037667 Author: Alan Garny Date: Thu Jan 5 16:19:21 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 17a0376670d96f0eb233b3373e2bdbc62fcb922a Merge: 38d8eae13 1c5a4c397 Author: Alan Garny Date: Thu Jan 5 16:17:30 2017 +0100 LLVM: upgraded to version 3.9.1 (closes #1099). commit 1c5a4c3978f0d9203f3770b72c1daecc56317a02 Author: Alan Garny Date: Thu Jan 5 15:36:44 2017 +0100 LLVM: some work on upgrading to version 3.9.1 (#1099). commit 9a42846b9f18be448ac81cbfe57bd88c3ff35fb5 Author: Alan Garny Date: Thu Jan 5 13:25:10 2017 +0100 LLVM: some work on upgrading to version 3.9.1 (#1099). commit 45ccf0cf74b2b9d5c65f63f3e5780a6d4624f6ac Author: Alan Garny Date: Thu Jan 5 13:12:01 2017 +0100 LLVM: some work on upgrading to version 3.9.1 (#1099). commit d1b746e95d9e55b755eee2444da908230d9efc97 Author: Alan Garny Date: Wed Jan 4 18:52:43 2017 +0100 LLVM: some work on upgrading to version 3.9.1 (#1099). commit 11c81d0f2dffeec473361c8c8039e520bd268080 Author: Alan Garny Date: Wed Jan 4 18:21:22 2017 +0100 LLVM: some work on upgrading to version 3.9.1 (#1099). commit 38d8eae13cef04ad4d8ec57f321a5532f823c335 Author: Alan Garny Date: Wed Jan 4 17:43:56 2017 +0100 Make sure that our compiler generates the type of code that is '\''compatible'\'' with the version of LLVM that we are using. commit 656ff4cb0b9740e8bae97e45236f51e531a75ca5 Merge: 777a83701 fc1917f99 Author: Alan Garny Date: Tue Jan 3 12:55:45 2017 +0100 Merge branch '\''master'\'' into issue1141. commit fc1917f994f679df016504b66e826af66593ef6d Merge: e8fd4178b 83b12ea82 Author: Alan Garny Date: Tue Jan 3 12:54:47 2017 +0100 zlib: upgraded to version 1.2.10 (closes #1185). commit 83b12ea82e5c29c0bd9c09d03297f7525d6e7a62 Author: Alan Garny Date: Tue Jan 3 12:29:07 2017 +0100 zlib: some work on upgrading to version 1.2.10 (#1185). commit 0b17880554833d7ebb60de3332d255bdad356800 Author: Alan Garny Date: Tue Jan 3 12:20:13 2017 +0100 zlib: some work on upgrading to version 1.2.10 (#1185). commit faa725fc1951588658e37d2cda9fa7bc14f23e28 Author: Alan Garny Date: Tue Jan 3 12:16:15 2017 +0100 zlib: some work on upgrading to version 1.2.10 (#1185). commit 777a83701a750a7eeaabfb035f6a0a6389bd941c Merge: a88311948 e8fd4178b Author: Alan Garny Date: Mon Jan 2 11:51:27 2017 +0100 Merge branch '\''master'\'' into issue1141. commit e8fd4178b25aaa4c5cd237003f5555bbb0d16688 Merge: 2ccdab34e 2e266cc19 Author: Alan Garny Date: Mon Jan 2 11:50:02 2017 +0100 libgit2: upgrade to version 0.25.0 (closes #1183). commit 2e266cc19d7f353b403023b483832f289f220c67 Author: Alan Garny Date: Mon Jan 2 11:13:04 2017 +0100 libgit2: some work on upgrading to version 0.25.0 (#1183). commit 1563fba01b867aeb9da95902f9f77464607daad8 Author: Alan Garny Date: Mon Jan 2 11:04:42 2017 +0100 libgit2: some work on upgrading to version 0.25.0 (#1183). commit 605a9f4385524e6f0049ed022001bd4b42e54855 Author: Alan Garny Date: Mon Jan 2 09:59:43 2017 +0100 libgit2: some work on upgrading to version 0.25.0 (#1183). commit cc283c47169c42601b6e75ca3eb59ec422c10c48 Author: Alan Garny Date: Mon Jan 2 09:57:11 2017 +0100 libgit2: some work on upgrading to version 0.25.0 (#1183). commit a8831194831fd0931e5ba14588ac6792486e15cb Merge: 5add41b43 2ccdab34e Author: Alan Garny Date: Sun Jan 1 15:35:58 2017 +0100 Merge branch '\''master'\'' into issue1141. commit 2ccdab34ee60582859ec144adacf423cb24340ec Merge: 7b1909be4 26e4b044c Author: Alan Garny Date: Sun Jan 1 15:33:48 2017 +0100 zlib: upgrade to version 1.2.9 (closes #1181). commit 26e4b044c4dd909c6d2c285a59d8571b0dbd8125 Author: Alan Garny Date: Sun Jan 1 15:09:39 2017 +0100 zlib: some work on upgrading to version 1.2.9 (#1181). commit faa73dc84820ad9d0fb88594a0c3895caf8f3fe1 Author: Alan Garny Date: Sun Jan 1 15:02:10 2017 +0100 zlib: some work on upgrading to version 1.2.9 (#1181). commit 3407546a9bb1d5431f48265a43945540842c26c7 Author: Alan Garny Date: Sun Jan 1 14:28:02 2017 +0100 zlib: some work on upgrading to version 1.2.9 (#1181). commit b58538cb0662f8f112a26cc09427a4085c43e647 Author: Alan Garny Date: Sun Jan 1 13:54:49 2017 +0100 zlib: some work on upgrading to version 1.2.9 (#1181). commit 2fc135e7737e723a3e79fa145f2cbf5e035a701b Author: Alan Garny Date: Sun Jan 1 13:48:22 2017 +0100 zlib: some work on upgrading to version 1.2.9 (#1181). commit 7b1909be49342c01be36c7cb150312f4a26bfc7d Merge: d064b574a 5562379fa Author: Alan Garny Date: Sun Jan 1 13:46:01 2017 +0100 QScintilla: upgrade to version 2.9.4 (closes #1179). commit 5562379fa6e7d0199f5e93439292845e6d18c50e Author: Alan Garny Date: Sun Jan 1 13:21:02 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 (#1179). commit 4848fa43060626ee4aa49b9e068fff2e88440e1c Author: Alan Garny Date: Sun Jan 1 13:10:01 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 (#1179). commit 14b436d59bd7f79344a3f66d5fddddd980ca9a04 Author: Alan Garny Date: Sun Jan 1 13:05:50 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 (#1179). commit 5add41b4360a50c151e444bbad8ee76f212c3cbf Merge: 4397c7402 d064b574a Author: Alan Garny Date: Tue Dec 20 13:33:18 2016 +0100 Merge branch '\''master'\'' into issue1141. commit d064b574af09e2d2e4d862980e45bb78163f82ac Merge: 396e02ed0 df188fa86 Author: Alan Garny Date: Tue Dec 20 13:30:29 2016 +0100 Merge pull request #1178 from opencor/issue1177 libgit2: upgraded to version 0.24.5 (closes #1177). commit df188fa86c7389bebe41e72fb3868d386194d304 Author: Alan Garny Date: Tue Dec 20 12:07:27 2016 +0100 libgit2: some work on upgrading to version 0.24.5 (#1177). commit cc93b7c8b7e24bedc645bc891acb968aa8763665 Author: Alan Garny Date: Tue Dec 20 11:59:10 2016 +0100 libgit2: some work on upgrading to version 0.24.5 (#1177). commit 396e02ed006f00257bc35ef4f3501d64dae6f381 Author: Alan Garny Date: Tue Dec 20 11:38:18 2016 +0100 Slight update to the developer'\''s documentation (following the release of Xcode 8.2.1) [ci skip]. commit 4397c7402166d59ab63098a830f2d7411f3d66d4 Author: Alan Garny Date: Mon Dec 19 17:40:02 2016 +0100 A way to see what is being generated. commit c9ec098db57a8ae1821bb84aafb7df6c91ebbd94 Author: Alan Garny Date: Mon Dec 19 17:39:35 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 01a060028980adec31d1dd78f505e63a657e789c Author: Alan Garny Date: Mon Dec 19 17:05:27 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). Removed things that are not being used. commit b59b9b8dc01e955b83df62a743fa3861bfce07dc Author: Alan Garny Date: Mon Dec 19 17:03:34 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 05665c20934665d1dc89d4468c385f6b0f0615a9 Merge: 17ed1b1c0 24099a369 Author: Alan Garny Date: Fri Dec 16 21:04:02 2016 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 17ed1b1c0a2174e0648804bc5e130c09ebfe0c7b Author: Alan Garny Date: Fri Dec 16 21:03:47 2016 +0100 Slightly improved our progress bar widget. commit 37e5d6db69c8f278b3b3f6a526504c29dde81e57 Author: Alan Garny Date: Fri Dec 16 17:01:08 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f0b16e2e357e50c62b973854359eb1ab8daec027 Author: Alan Garny Date: Fri Dec 16 12:44:52 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 46a14de01facf30099ad284ea45b0a0e61ad0d51 Author: Alan Garny Date: Fri Dec 16 11:39:32 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4e998fe29db1fa714ed78eb4e8c44a382d4d94ae Author: Alan Garny Date: Fri Dec 16 11:01:48 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 06b2f70f456638947fbdfdef90fd2428a62acfd2 Author: Alan Garny Date: Thu Dec 15 19:00:17 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5e4c343d641ca6daf0ef49d3dec87041f04d3006 Author: Alan Garny Date: Thu Dec 15 17:40:04 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 8644f5cfd043e4e3df9915a93cefcd99b5b75993 Author: Alan Garny Date: Thu Dec 15 16:57:34 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 368cf22c4d4ffd0b1d801808538417549cfa6644 Merge: d4278e5ac 24099a369 Author: Alan Garny Date: Thu Dec 15 16:52:26 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 24099a369c69c9e32853df9ecc2dcb277ef8e622 Author: Alan Garny Date: Thu Dec 15 16:52:06 2016 +0100 Reverting commit dccf757 since it may cause other problems. Indeed, our PMR support plugin relies on Settings to save its settings, so say that you start OpenCOR and authenticate to PMR, then upon leaving OpenCOR, your authentication information to PMR will be lost. Now, we might be able to retrieve that information prior to saving our settings, but it might require a new method to our Plugin interface since no Plugin interface method is called before calling saveSettings(). Anyway, it’s not worth it in the end and it’s better to ‘manually’ clear whatever settings needs clearing before saving our settings. Also, commit dccf757 might have been fine for the GUI side of things, but what about the CLI version of OpenCOR? In fact, we forgot to clear the settings (as in commit dccf757) before saving them in the CLI version, but if we had cleared them then we would have likely lost useful GUI settings in the process. So, yes, a ‘good’ idea gone wrong… commit d4278e5ac173480c9bda07f95cd2b78a6462c24d Author: Alan Garny Date: Thu Dec 15 16:07:52 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 596e21d5b7e349eee6f50d515d7584fd0d30ebae Author: Alan Garny Date: Thu Dec 15 15:52:53 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f2159b10603cf04776aec39a5fc7d5412fb8f9ca Author: Alan Garny Date: Thu Dec 15 15:31:09 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). Hate it (especially when it’s not because of your own doing) when you spend a long time trying to figure out why a plugin doesn’t load on Windows, then to find out that it’s because some interfaces are not compiled for that said plugin! commit e356eb0b917128826e43e4e740e5cfe6835ddd62 Merge: 37723fc3b 6b2395b73 Author: Alan Garny Date: Thu Dec 15 13:28:45 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 6b2395b73175393720cbac7279bb49dc25dd3b70 Author: Alan Garny Date: Thu Dec 15 13:28:19 2016 +0100 Removed some unused (former debug?) code. commit 37723fc3b8de66d2ab1393835e7b538103c8ba2c Author: Alan Garny Date: Thu Dec 15 11:53:38 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 9553dec22162b8d3a7d40c4d1ef85abc71ecba37 Author: Alan Garny Date: Thu Dec 15 11:51:19 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d378bf743ed829f30fb4d3da6e6975e72d0e232d Author: David Brooks Date: Thu Dec 15 10:44:22 2016 +1300 Get matplotlib working under PythonQt (#1085). commit bc588ca96fcb23d0e5d484b6e80af649e62f9866 Author: Alan Garny Date: Wed Dec 14 17:58:11 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4b6c93ed7dd9c947790043a17da65b77c691e523 Merge: 44e3a65f8 dccf75777 Author: Alan Garny Date: Wed Dec 14 17:54:45 2016 +0100 Merge branch '\''master'\'' into issue1141. commit dccf75777113f38ebe46050ffbdab634b089abdd Author: Alan Garny Date: Wed Dec 14 17:54:25 2016 +0100 General: make sure that we start afresh when saving our settings [ci skip]. This means that, for plugins, we don’t have to worry about removing previous settings, should there ever be a need for this. commit 44e3a65f8cea53a1bb0eff7d1850a1169743eb44 Author: Alan Garny Date: Wed Dec 14 17:26:34 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 8cb54a284ecddf5eebbd2090c35e600244a2f43a Author: Alan Garny Date: Wed Dec 14 17:00:31 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b60d30e67c3ca806d1a9ccae399a78e89c07d438 Author: Alan Garny Date: Wed Dec 14 16:18:42 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1990ecfc5ce477a0ad302ab0f7e7c86eaa8b75bf Author: Alan Garny Date: Wed Dec 14 16:05:50 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2de13bb5d74780559a2d19ad058fe110aa4448b4 Author: Alan Garny Date: Tue Dec 13 17:39:27 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 32ff0811f3f6fc01e87bdef91d0c7d82533df65b Author: Alan Garny Date: Tue Dec 13 17:39:07 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit fdfe58d918164433d3f5fc1d2f9d3132945990f9 Author: Alan Garny Date: Tue Dec 13 16:55:57 2016 +0100 Some minor cleaning up. commit 249f9f820fb91c00c74edd724b0ab418ebde3f1c Author: Alan Garny Date: Tue Dec 13 16:40:43 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 72c1da0956bd9750afdd8c08b7ea4592f5fcfb03 Merge: 55bc7ecbe e5a9b7322 Author: Alan Garny Date: Tue Dec 13 14:48:07 2016 +0100 Merge branch '\''master'\'' into issue1141. commit e5a9b7322a8720f0f0724b47a1db4b3e3e3b2d02 Author: Alan Garny Date: Tue Dec 13 14:47:02 2016 +0100 Refactored some code that deals with a widget'\''s context menu. We could simply override the contextMenuEvent() method rather than calling setContextMenuPolicy(Qt::CustomContextMenu) and then handling the customContextMenuRequested() signal. commit 55bc7ecbe4a5bf9985bc5e5b4e06b201f1c9f25e Author: Alan Garny Date: Tue Dec 13 13:45:06 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b6c7a34fdb93f145c0d366faf9052abb0db8ec7b Merge: 1538e4147 d17602361 Author: Alan Garny Date: Tue Dec 13 09:57:43 2016 +0100 Merge branch '\''master'\'' into issue1141. commit d176023615290cfe858c4ece8c993d75b5dcff92 Author: Alan Garny Date: Tue Dec 13 09:57:27 2016 +0100 Slight update to our prerequisites page [ci skip]. commit 1538e41479acc8122046bafb0cf433a5a8894036 Author: Alan Garny Date: Mon Dec 12 20:00:40 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3e0a9c8b3ed55df5e69a41881981652782c23525 Author: Alan Garny Date: Mon Dec 12 17:50:58 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 36d3a6c226f6b83a73320319ee1bf97d7eda0289 Merge: be8118f1d d0189b71e Author: Alan Garny Date: Mon Dec 12 17:07:36 2016 +0100 Merge branch '\''master'\'' into issue1141. commit d0189b71e56cbe3619120107906580be6d45b94f Author: Alan Garny Date: Mon Dec 12 17:07:19 2016 +0100 Slight update to our third party libraries page [ci skip]. commit be8118f1d74894c0e327774ff2a98751b573cc28 Author: Alan Garny Date: Mon Dec 12 16:13:25 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4664a1171ecce958330c0c470c08438ff21524d0 Author: Alan Garny Date: Mon Dec 12 14:24:07 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 0d31cf84cd4852b99f7c733c0e9f9733982f510d Author: Alan Garny Date: Mon Dec 12 13:42:33 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4d11a283212076e9818a0a60807f534bd707ff9b Author: David Brooks Date: Mon Dec 12 18:00:54 2016 +1300 Specify Python plugin'\''s dependencies. commit 4b691c4149d6212deda46b1b402ba3794e6a1bdf Author: David Brooks Date: Mon Dec 12 18:00:15 2016 +1300 Use pre-built version of Python Qt (#1085). commit 41761b9f7c2a3b56b4067c3f63a990414ff430dc Author: David Brooks Date: Mon Dec 12 17:59:32 2016 +1300 Fix typos... (#1085). commit 62f1810e55862bd1d388177d6c2bf594f4456f91 Author: David Brooks Date: Mon Dec 12 17:58:55 2016 +1300 Tidy up code (#1085). commit 6e26c5a0ca14b8e22ceb65fc8ecc320103b4446f Author: David Brooks Date: Mon Dec 12 17:51:46 2016 +1300 Rename `PythonQt` plugin to `PythonQtAPI` to avoid name clashes with the actual Python Qt library (#1085). commit 6889a764de350b4e2e00b8434d90112407dbe196 Author: David Brooks Date: Mon Dec 12 15:32:22 2016 +1300 Use CTK'\''s console widget for our Python console window (#1085). commit e019a5316f24c3eb46a820517ef0f3a906b4ef2a Author: David Brooks Date: Mon Dec 12 15:29:51 2016 +1300 Use CTK'\''s AbstractPythonManger with Python Qt (#1085). commit b627740a52e6aee8569f1b3ea614aabed9c07c15 Author: David Brooks Date: Mon Dec 12 15:27:44 2016 +1300 Use our EXPORT macros in CTK headers (#1085). commit dc89fa6d8a0c477aff9c0b07574ffc963e2ac7c7 Author: David Brooks Date: Mon Dec 12 12:36:01 2016 +1300 Tidy up removal of Python Qt submodule (#1085). commit 1bb1b4fa608e0dfe46b0820b54188006c0b62d12 Author: David Brooks Date: Mon Dec 12 12:12:11 2016 +1300 Get ctkAbstractPythonManager building with Qt5 (#1085). commit 66dad4ca6cd25f56aac776a21b9e04238762d6c0 Author: David Brooks Date: Mon Dec 12 12:11:20 2016 +1300 Work on PythonQt support module (1085). Use CTK'\''s Python manager for Python Qt. commit 7c9f0b96e0c7cddefca43e203363b46f7fbba039 Author: David Brooks Date: Mon Dec 12 11:30:40 2016 +1300 Work on new PythonQtSupport plugin (#1085). commit 07bede4d1b8293fdd6e3c6e6b36111ab99de5722 Merge: 4eb18ffeb 533757e1f Author: Alan Garny Date: Fri Dec 9 10:14:59 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 533757e1f41a458b7cd19eb130b7cbe479847cc8 Author: Alan Garny Date: Fri Dec 9 09:56:53 2016 +0100 Some minor cleaning up [ci skip]. commit 1dc038cd4d273aedeb1cc270b80a3395bfc9c547 Merge: 2b8029d16 d2312a5c8 Author: Alan Garny Date: Fri Dec 9 09:55:37 2016 +0100 Set external binaries directory at CMake intialisation time. commit 414ce6c8fe29902fb1d19ba55972fe67331f2707 Author: David Brooks Date: Fri Dec 9 21:34:17 2016 +1300 The Python Qt sources are no longer in a git sub-module (#1085). commit 073f3773878f7b42cb9e16b52ec1ac716f66832f Author: David Brooks Date: Fri Dec 9 21:31:34 2016 +1300 Work on a Python console window (#1085). These files are copied from the Common Toolkit (CTK) project (https://github.com/commontk/CTK) as of commit 04607d0. commit fcb97fdffe687720c310328e80f56dbb0c306393 Author: David Brooks Date: Fri Dec 9 16:07:27 2016 +1300 Revert PMR Workspaces code. commit b70517f0f9c372ec7f0aa6f11c3ca12cefa624ba Author: David Brooks Date: Fri Dec 9 14:41:41 2016 +1300 Build and package Python Qt as an External Project (1085). commit c7543012cabdd0aa1c24bd6695ff02347e6764aa Author: David Brooks Date: Fri Dec 9 14:40:26 2016 +1300 Tidy up Python plugin build (#1085). commit dfa7512f861e291e4375611921f189daa80a7770 Author: David Brooks Date: Fri Dec 9 14:34:12 2016 +1300 DEST_EXTERNAL_BINARIES_DIR is now set globally. commit ef37db63da3f85da127cf53bf7d9145475d18a79 Author: David Brooks Date: Fri Dec 9 14:33:04 2016 +1300 CLI plugin initialisation now works as expected (#1173). commit df24b1623345cc348625183190bf57dc4871fe67 Author: David Brooks Date: Fri Dec 9 14:32:00 2016 +1300 Consistently use UPPERCASE for CMake commands (#1085). commit 219640e4ca2894f904d5c9d6b98cba0d91890217 Merge: 762f460d4 d2312a5c8 Author: David Brooks Date: Fri Dec 9 14:01:46 2016 +1300 Merge branch '\''ext_bin_dir'\'' into pythonplugin commit d2312a5c86655b25f6f117393dda28dfb5182fe2 Author: David Brooks Date: Fri Dec 9 13:25:03 2016 +1300 Set and create external binaries destination directory at initialisation time. commit 762f460d4a7f9caedc10c1517362c272caba2eac Merge: c40fc871d 2b8029d16 Author: David Brooks Date: Fri Dec 9 10:21:41 2016 +1300 Merge branch '\''master'\'' into pythonplugin commit 4eb18ffeb9487c5e341776ce2897f5588a026892 Merge: 1397bc512 2b8029d16 Author: Alan Garny Date: Thu Dec 8 19:30:51 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 2b8029d16b7af9d8023c1dc7e34f63ffcc6fe188 Author: Alan Garny Date: Thu Dec 8 19:29:58 2016 +0100 Slight updates to our downloads page [ci skip]. commit 1397bc5124037758e0411d2e14b86fa616f205c5 Merge: d3eb50dcd 2d283b8e4 Author: Alan Garny Date: Thu Dec 8 19:13:38 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 2d283b8e487557d77cc68ff39ede894f63667116 Merge: 0a7aecfb5 512211f01 Author: Alan Garny Date: Thu Dec 8 19:11:57 2016 +0100 CLI: a plugin'\''s initialisation and finalisation code now gets called when run from the CLI (closes #1173). commit 512211f014dd1c728b1b4432052c3953b6b20162 Author: Alan Garny Date: Thu Dec 8 18:09:43 2016 +0100 CLI: some work on ensuring that a plugin'\''s initialisation and finalisation code is called when running from the CLI (#1173). commit acf9b4537c676e167cf45e2c65fc91cabecefdbb Author: Alan Garny Date: Thu Dec 8 17:40:20 2016 +0100 Some minor cleaning up. commit c40fc871d3d25a9401a1c121faabb37e55b8e06a Author: David Brooks Date: Thu Dec 8 19:35:31 2016 +1300 Implement "help" and "pip" commands and run Python when there'\''s no command (#1085). commit 6d1ccc31a184a644bf2e278db51ff80db599bc1e Author: David Brooks Date: Thu Dec 8 19:32:29 2016 +1300 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit de61051682d250b7223cf02054d90a26e7da8f77 Author: David Brooks Date: Thu Dec 8 18:02:14 2016 +1300 Build package Python as an ExternalProject (#1085). commit 7a69d47a37a3389421596742a0de34a03e1d6a44 Author: David Brooks Date: Thu Dec 8 17:55:00 2016 +1300 Save the root directory of external packages in global variables so CMake can find them when building other packages (#1161). commit 2bfb80b2a6fe02996da08499dcddc06b71c51fde Author: David Brooks Date: Thu Dec 8 17:51:18 2016 +1300 Extend ADD_PLUGIN macro to optionally copy a directory into the generated application (#1106). commit d3eb50dcdf30f1e85d9658e0aec3ce523bcae5ab Author: Alan Garny Date: Wed Dec 7 18:13:26 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 66a99bce00d9251843dae85a5771ab9e1b672fae Author: Alan Garny Date: Wed Dec 7 17:53:01 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 441f46dbd63c16d6b1498526d06f1f2393378063 Author: Alan Garny Date: Wed Dec 7 16:57:08 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7afc63e0d88e6544e119fd3cdd55dedce3450e49 Author: Alan Garny Date: Wed Dec 7 16:06:08 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c5d2954971e8cc2ca8bbbde4b90fe2a8c5a1105c Author: Alan Garny Date: Wed Dec 7 15:50:46 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit edc07641606b9c49793a5608022555b5323988c9 Merge: b4555ea47 0a7aecfb5 Author: Alan Garny Date: Wed Dec 7 09:56:42 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 0a7aecfb5f0544c325df94cce0f91397bbe785cb Merge: 76b0d2fa4 898f356e6 Author: Alan Garny Date: Tue Dec 6 22:53:46 2016 +0100 README files: converted them to reStructuredText (closes #1170). commit 76b0d2fa4832c061e396d4f1dd9ebaab5fc7f7c4 Author: Alan Garny Date: Tue Dec 6 22:21:34 2016 +0100 Made sure that our Core CLI test takes into account that the Samples plugins may be built. commit e609ee6f71b334ceca484ed3814003beb107a3ab Author: Alan Garny Date: Tue Dec 6 20:49:23 2016 +0100 Trying to understand why our Core CLI test for the '\''-p'\'' option fails... commit a1dfe2fc32c25d22703902899d04cfcd095f4da3 Author: Alan Garny Date: Tue Dec 6 19:55:48 2016 +0100 Added some tests following issue #1168. commit 898f356e689bc3be5215ce86282bc145e6e65de2 Author: Alan Garny Date: Tue Dec 6 19:04:23 2016 +0100 README files: some work on converting them to reStructuredText (#1170). So, it wasn’t actually rendering properly on https://livesphinx.herokuapp.com/ either, but now it does, so it ought to be fine on GitHub too… commit fa6fc6a5283da680f73c2ac58bb2909ebdb9d84d Author: Alan Garny Date: Tue Dec 6 19:03:16 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 6decb1748dbfcd06311b5b18683c1590e8d72616 Author: Alan Garny Date: Tue Dec 6 19:01:06 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit ba37b6b69fed2dc8fc9548062ec283ab4d07be49 Author: Alan Garny Date: Tue Dec 6 18:59:35 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 994d21573944d1caeb802ce122801ea4d70c8c28 Author: Alan Garny Date: Tue Dec 6 18:58:52 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 286f9b17906f558b82663dfc0baaeaa8153731ac Author: Alan Garny Date: Tue Dec 6 18:58:02 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit b5b04ffa7604975abe4fd01b055cfe4e7b0b293c Author: Alan Garny Date: Tue Dec 6 18:57:23 2016 +0100 Revert "README files: some work on converting them to reStructuredText (#1170)." This reverts commit d8cc010c1c3cfa1ba8c066da7d0273ba25f5c607. commit d8cc010c1c3cfa1ba8c066da7d0273ba25f5c607 Author: Alan Garny Date: Tue Dec 6 18:56:44 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 6599f890d0dab96e1a530a8f7c3ef318f51276b6 Author: Alan Garny Date: Tue Dec 6 18:55:57 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 1140a5f452f6f86b1b45e8315acb3d0fd187cfb0 Author: Alan Garny Date: Tue Dec 6 18:55:08 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit 1e9410e34783853dec61e326adc9d5c1b7ef56be Author: Alan Garny Date: Tue Dec 6 18:54:20 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Trying to see why the LLVM readme file doesn’t render properly on GitHub… commit cbe01cb65bedf0b0a854c53623fb1d8bb8219e8d Author: Alan Garny Date: Tue Dec 6 18:46:09 2016 +0100 README files: some work on converting them to reStructuredText (#1170). commit 6a3b27682d4563b3e6a69b22ad715933197bb014 Author: Alan Garny Date: Tue Dec 6 18:45:12 2016 +0100 README files: some work on converting them to reStructuredText (#1170). commit 59097efd07368a93eaf3fec59001442c19a0ad84 Author: Alan Garny Date: Tue Dec 6 18:43:43 2016 +0100 README files: some work on converting them to reStructuredText (#1170). commit 0dc442c29fb66e83a7f679e5fe7c2a69ef0eead0 Author: Alan Garny Date: Tue Dec 6 18:39:34 2016 +0100 README files: some work on converting them to reStructuredText (#1170). GitHub doesn’t support that way of generating a line break, so forget about it. commit 114353f8ed9dcb092188ac0a4fe5342c1e54c2bd Author: Alan Garny Date: Tue Dec 6 18:27:59 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Well, pandoc is really not great at converting Markdown to reStructuredText! commit 30b41db1c89d0273612488f10962de8318ff973a Author: Alan Garny Date: Tue Dec 6 13:40:28 2016 +0100 README files: some work on converting them to reStructuredText (#1170). Result of calling: pandoc --from=markdown --to=rst --output= commit babdf2cc1c41a182bf90afa8ccc6a9c407cffe2e Author: Alan Garny Date: Tue Dec 6 13:39:05 2016 +0100 README files: some work on converting them to reStructuredText (#1170). commit d1921a576659fff8c6f81e53f5975c58d4b03117 Merge: 4f78249b2 40432c346 Author: Alan Garny Date: Tue Dec 6 10:45:50 2016 +0100 CLI: fixed a misleading help message when the command specifies a missing plugin (closes #1168). commit 4f78249b24665faeaddd2400cb7d36a38aae6255 Author: Alan Garny Date: Tue Dec 6 10:36:56 2016 +0100 Some minor cleaning up [ci skip]. commit 84f582eff36ffaf35c7829e29de40c4dfe36f920 Merge: 91ff19311 c2e3ce29d Author: Alan Garny Date: Tue Dec 6 10:35:34 2016 +0100 CLI: options can now be passed to plugins (closes #1166). commit 42c3d504d6febf3f84bf8b0fce4ff987c04b6a85 Author: David Brooks Date: Tue Dec 6 13:51:18 2016 +1300 Tidy up code. commit b90898b689e95fa5813c399a04e640ddc34d3a50 Author: David Brooks Date: Tue Dec 6 13:50:14 2016 +1300 Fix a bad merge. commit 30455cc8b9e0373aac10bb6571b32a0b2de0bb2a Merge: cf697ed01 40432c346 Author: David Brooks Date: Tue Dec 6 13:43:36 2016 +1300 Merge branch '\''cli_help'\'' into pythonplugin commit 40432c3462573d52361d015c1321e1e5b68678df Author: David Brooks Date: Tue Dec 6 13:43:13 2016 +1300 Actually allow an empty command to be sent to a plugin (#1168). commit cf697ed01837dc865371efbe79caf90fb64ddd23 Merge: fbe803cf3 61bf32df7 Author: David Brooks Date: Tue Dec 6 13:24:05 2016 +1300 Merge branch '\''cli_help'\'' into pythonplugin commit fbe803cf32f5be81dadf0c6c29c79789bb41dc7a Merge: c878c89e2 c2e3ce29d Author: David Brooks Date: Tue Dec 6 13:23:51 2016 +1300 Merge branch '\''cmd_args'\'' into pythonplugin commit c878c89e2e943107b01d9e2e7ff6abce1c9bf02c Merge: 4551a6048 91ff19311 Author: David Brooks Date: Tue Dec 6 13:18:41 2016 +1300 Merge branch '\''master'\'' into pythonplugin commit 61bf32df719cd64ab8aebcfc6bca2f6afd9f4c82 Author: David Brooks Date: Tue Dec 6 12:51:06 2016 +1300 Update CLI help to reflect changed syntax when sending a command to all plugins (#1168). commit 880573b0b387c13510ac5e76bc4acd4ff8f4cb53 Author: David Brooks Date: Tue Dec 6 12:49:18 2016 +1300 Always check a plugin exists even when it isn'\''t being given a command (#1168). commit c2e3ce29d792767269028b8900f8559ba7f2643b Author: David Brooks Date: Tue Dec 6 11:22:28 2016 +1300 All CLI arguments that follow a command need to be passed to the command (#1166). commit b4555ea474a1464bb52f7d85ce2e4656483df232 Author: Alan Garny Date: Mon Dec 5 17:23:58 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 23fa175f79e6b78c6d130689aec57e5bb3126e1d Author: Alan Garny Date: Mon Dec 5 15:32:12 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3eb6e0e4eb839277e5be05879ec9d86b71e01b6a Author: Alan Garny Date: Mon Dec 5 10:05:39 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 798519b6c38ee95c10a79da878bb30981c22f2a1 Author: Alan Garny Date: Mon Dec 5 10:04:21 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e318b9eecbf7e6013fef32df9d8e76a82d343170 Author: Alan Garny Date: Mon Dec 5 09:57:23 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6cddeb66492b3b17d6654a3176a448d4602a96f4 Author: Alan Garny Date: Mon Dec 5 09:56:35 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d0e9041c4432553ef7de403adda8a506d3272395 Merge: 6f2dba6c9 91ff19311 Author: Alan Garny Date: Mon Dec 5 09:47:34 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 91ff193112d0f46a570c3ed30ee1afd71a3f020b Merge: b940ab734 8fcc9af93 Author: Alan Garny Date: Mon Dec 5 08:21:10 2016 +0100 Plugins: prevented old plugins from potentially crashing OpenCOR (closes #1163). commit 8fcc9af93f643a32c2c98ae767cd23bdb7506af6 Author: Alan Garny Date: Fri Dec 2 19:56:43 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). Some cleaning up in commit 9a63d77b22f05345c5a5cc39ee50ce8b4e0e55a8 went a bit too far... commit 1c6fd6c04f3d8e28d28df14170ce65ce95820606 Author: Alan Garny Date: Fri Dec 2 19:30:13 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 888bf03677bb20ace9fcf27a005902d8a5db2dff Author: Alan Garny Date: Fri Dec 2 18:49:50 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 8081a63729314d6d0e572f12bdc0988b2ff75448 Author: Alan Garny Date: Fri Dec 2 17:48:46 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 9a63d77b22f05345c5a5cc39ee50ce8b4e0e55a8 Merge: 755efa3dd b940ab734 Author: Alan Garny Date: Fri Dec 2 17:04:03 2016 +0100 Merge branch '\''master'\'' into issue1163. commit b940ab73406709213f7c2f2dbe3da3ef37152f0b Author: Alan Garny Date: Fri Dec 2 17:03:32 2016 +0100 Slight updates to the developer documentation [ci skip]. commit 755efa3dd7fec16fffa31c6f7c73651652efea5c Author: Alan Garny Date: Fri Dec 2 16:25:37 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 46e19e1a9aa61f4211dd5e16e67ba9369a980911 Author: Alan Garny Date: Fri Dec 2 16:14:04 2016 +0100 Some minor cleaning up. commit c8273cbac9f50f961cd256025a599b4996eb693a Author: Alan Garny Date: Fri Dec 2 14:26:57 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 2824f42051054b4e0337c854dc52e84bf6a5dbb4 Author: Alan Garny Date: Fri Dec 2 14:25:48 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 4551a60482fb9d6b174cb14a84e44ae765bc164a Author: David Brooks Date: Fri Dec 2 20:57:45 2016 +1300 Remove unused files following merge. commit acb0fec01afa2dc6608edd851bd1da5ac58cb9cc Author: David Brooks Date: Fri Dec 2 20:38:55 2016 +1300 Remove unused git submodules. commit e65714a5d15b7bcdc8668e6fd11536b82c3fdcd4 Merge: 4a77c0349 e1cb0c5e9 Author: David Brooks Date: Fri Dec 2 17:59:45 2016 +1300 Merge branch '\''ext_openssl'\'' into pythonplugin commit 4a77c0349f18eeced541ce490fdeb750c3879ba5 Merge: fb151505b d2dd614ee Author: David Brooks Date: Fri Dec 2 17:53:28 2016 +1300 Merge branch '\''master'\'' into pythonplugin This reverts commit 5f1f00a2e4cab46a8be3623fc56ad8fa8592dd05, reversing changes made to c8a495b0cfcf7d56a5e211e966e979c40e229376. commit e1cb0c5e977c79b2d149429a9bacf7a98f632b2a Merge: afee018f1 e95ca18fe Author: David Brooks Date: Fri Dec 2 13:04:11 2016 +1300 Merge branch '\''extpack'\'' into ext_openssl commit e95ca18fec834b87bb8678bfdde1204ab67e1922 Merge: 19c830b0e d2dd614ee Author: David Brooks Date: Fri Dec 2 13:03:38 2016 +1300 Merge branch '\''master'\'' into extpack commit afee018f1e08b4fc97f4f270d80365ca15645cfc Author: David Brooks Date: Fri Dec 2 12:47:55 2016 +1300 OpenSSL now builds as an external library and plugin (#1101). commit a250c91809c4f135f0748b5dc726f6f4269f50e1 Author: David Brooks Date: Fri Dec 2 12:45:43 2016 +1300 Don'\''t run UPDATE step in ExternalProject_Add (#1106). commit 23fce74ff6d9c85bfa3c8bfe865b085d134ddfba Merge: be66d03f3 19c830b0e Author: David Brooks Date: Fri Dec 2 12:45:04 2016 +1300 Merge branch '\''extpack'\'' into ext_openssl commit 19c830b0efc05faf95093f0398f73e60651ebdf7 Author: David Brooks Date: Fri Dec 2 12:43:54 2016 +1300 Don'\''t run UPDATE step in ExternalProject_Add (#1106). We are building against a tagged release and re-running update triggers build/configure/install steps... commit be66d03f35d6a601f9a0e42da2070013234b0729 Author: David Brooks Date: Fri Dec 2 12:33:42 2016 +1300 Improve package retrieval (#1106). Use `PACKAGE_VERSION` to refer to a package'\''s version when generating retrieval code; check that we have the expected number and order of arguments when retrieving a package. commit 07261f3455e90cf5cad19d22b73dc3c38d4a2a0a Author: Alan Garny Date: Thu Dec 1 18:08:35 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit e32eaffdb63a0c9b2a0a5d08d30ef73b447305bc Author: Alan Garny Date: Thu Dec 1 17:53:11 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit cb57dd23a4335b3a77af934f90c6c8c0f27b51e0 Author: Alan Garny Date: Thu Dec 1 16:37:38 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 56bb95e335faeb903d3ea12b488a3b88f5957cc2 Author: Alan Garny Date: Thu Dec 1 16:28:08 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 9feb934e9f96f4a73dfaba219890f4bfb8087a2f Author: Alan Garny Date: Thu Dec 1 16:11:09 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit af7abf35942245a5099d16bde72d390b671d5a33 Author: Alan Garny Date: Thu Dec 1 16:09:25 2016 +0100 Some minor cleaning up. commit 52aabd79b485b77195852b96a4db41b1142c86c7 Author: Alan Garny Date: Thu Dec 1 13:42:40 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit d2dd614ee246ea69b15c00815bd5fdabf9337318 Merge: 5a4c581e9 9fad3b8ff Author: Alan Garny Date: Wed Nov 30 20:43:31 2016 +0100 Plugins: prevented old plugins from potentially crashing OpenCOR (closes #1163). commit 9fad3b8ff16b6cde1fdc46beee73ace28574cf6c Author: Alan Garny Date: Wed Nov 30 17:48:18 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 65e06cf00e7ed2efad42e384c7b6e8634bb22865 Author: Alan Garny Date: Wed Nov 30 15:43:57 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit e9ee235237642e6bfad8b05dc9074366b3e964fc Author: Alan Garny Date: Wed Nov 30 15:41:28 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 00e7b840c1eb075a26bbfd8081fefd27e6124bea Author: Alan Garny Date: Wed Nov 30 15:30:08 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 860eed87e05bad6af484b1e0319b2de908306a7e Author: Alan Garny Date: Wed Nov 30 15:29:05 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit be47bc607ee9c4f1487a94ec940cf8408913cd81 Author: Alan Garny Date: Wed Nov 30 15:28:43 2016 +0100 Plugins: some work towards preventing old plugins from potentially crashing OpenCOR (#1163). commit b455a66a3a37225f6a2a01914cba02a3641ea791 Author: Alan Garny Date: Wed Nov 30 15:03:32 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 2d1cc21b5d86dba40d89184422c5c2a21adf811b Author: Alan Garny Date: Wed Nov 30 14:55:33 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR (#1163). commit 5a4c581e9511aee299b85640ea7dfbc26c847f42 Author: Alan Garny Date: Wed Nov 30 11:39:03 2016 +0100 Plugins: improved the status error of a plugin when in CLI mode [ci skip]. commit bab592a0f6401ef7616ab8b0f03d70fe96c6d721 Author: Alan Garny Date: Wed Nov 30 10:42:48 2016 +0100 Plugins: improved the status error of a plugin when in CLI mode [ci skip]. commit 9841bb617b232a168ff3bf5fc11ab5c0edcebd34 Merge: 3f31ac7e2 dfab1e405 Author: David Brooks Date: Wed Nov 30 17:54:20 2016 +1300 Merge branch '\''extpack'\'' into ext_openssl commit dfab1e4056555c266fe7acc5206b01823876fd82 Author: David Brooks Date: Wed Nov 30 17:53:18 2016 +1300 Merging left us with a duplicate run of install_name_tool (#1106). commit 3f31ac7e22a9ad6ed652ab5c406d46c0ff7fd8fc Author: David Brooks Date: Wed Nov 30 17:49:11 2016 +1300 Work on OpenSSL as a plugin using ExternalProject(#1101). commit e47dfa43917f6e1890d6e22f3cea3815a6641eda Author: David Brooks Date: Tue Nov 29 08:24:47 2016 +1300 Work on adding OpenSSL as a plugin (#1101). commit 6f2dba6c94f13d0707c3f1f47fe4351249460407 Merge: fe87dee0e 65a2f73ad Author: Alan Garny Date: Mon Nov 28 18:19:06 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 65a2f73addbe4dec038aed18b2af98fe0efe1645 Author: Alan Garny Date: Mon Nov 28 18:04:26 2016 +0100 Some minor cleaning up [ci skip]. commit 16e90c94cd4d267c194df0b94898f832406d376e Author: Alan Garny Date: Mon Nov 28 18:04:05 2016 +0100 Cleaned up our various README.md files [ci skip]. commit b82d09f870d5e35dfbe7ddc8ce317cb65922ba0c Author: Alan Garny Date: Mon Nov 28 15:41:54 2016 +0100 Renamed (and cleaned up) some README.txt files to README.md [ci skip]. commit fe87dee0e91dab36551798353312761d319c1e3b Merge: e89e06e96 b2ac4ea7e Author: Alan Garny Date: Mon Nov 28 11:17:42 2016 +0100 Merge branch '\''master'\'' into issue1141. commit b2ac4ea7e4ab9129c698bf251c10a720bc50b644 Author: Alan Garny Date: Mon Nov 28 11:13:34 2016 +0100 Renamed (and cleaned up) some README.txt files to README.md. commit 90998732482723f8e7b9a7f4c343f7a2c060d9b0 Author: David Brooks Date: Mon Nov 28 23:07:09 2016 +1300 Disable SampleExternal plugin until it is updated as Travis build is failing (PR #1162). commit 78f1fd5b57fabb3cf308bc66562472819fee494c Author: David Brooks Date: Mon Nov 28 23:03:23 2016 +1300 Use top-level .gitignore to ignore any ./external subdirectory in a plugin'\''s directory (#1106). commit 5a859af0e8a577a425d39ad9b3982bed46dfe5a6 Author: Alan Garny Date: Mon Nov 28 10:38:28 2016 +0100 Some minor cleaning up [ci skip]. commit 6bacff05eec0d0b404ec4909e4c9504134513d44 Author: Alan Garny Date: Mon Nov 28 10:26:43 2016 +0100 Removed our original README.txt and slightly cleaned up our README.md file [ci skip]. commit 5378f67aebc12c92c54a8c83431d244e673931d0 Author: David Brooks Date: Mon Nov 28 21:38:50 2016 +1300 Add comments describing zlib'\''s build and packaging (#1106). commit 2cf499af321ed606fd825b49773b809a78095cda Author: David Brooks Date: Mon Nov 28 21:38:12 2016 +1300 Update SHA1 values for macos. commit 6e355cf72fafce26bf95d2e17fedacdc264159b3 Author: David Brooks Date: Mon Nov 28 17:13:31 2016 +1300 Build and package zlib under Linux (#1106). commit ccc213b549bc3cc94aab002ef91069a6d1ce1d76 Author: David Brooks Date: Mon Nov 28 16:52:43 2016 +1300 Minor tidying up. commit f5405b7239de6511160aa09d185640a0c79d009a Author: David Brooks Date: Mon Nov 28 16:52:20 2016 +1300 Build and package zlib under Windows (#1106). commit df57cc64a8a08cf6e05a907ef0463cb3644bd0d4 Merge: 62daa736d 03bb3e726 Author: David Brooks Date: Mon Nov 28 16:01:49 2016 +1300 Merge branch '\''master'\'' into extpack commit 62daa736d3c5b859876f742d3945ffc235a79057 Author: David Brooks Date: Mon Nov 28 15:59:40 2016 +1300 Package a prebuilt zlib package (#1106). commit e5665d96d6225aeb3ae2e6c48b4b8ff33c9d6a36 Author: David Brooks Date: Mon Nov 28 15:43:29 2016 +1300 Use more meaningful variable names in helper code for package retrieval (#1106). commit ad77040b35c15c6a5fa5b3925ee9cc8909906809 Author: David Brooks Date: Mon Nov 28 15:41:34 2016 +1300 Use correct path to archive when downloading (#1106). commit 6f6e69e024ef56d9b99d9ef052dcdd428f5193c8 Author: David Brooks Date: Mon Nov 28 13:33:56 2016 +1300 Only create a package'\''s archive after the package has been built (#1106). commit 08d4b26c3f5488d40108656003470dbb64e85101 Author: David Brooks Date: Mon Nov 28 10:56:24 2016 +1300 Tidy up code (#1106). commit 93fd33da5e6c0e47304a9887a2d2659f1b5bc9bd Merge: 3ec3d44e8 60a7e1e6a Author: David Brooks Date: Sun Nov 27 17:27:45 2016 +1300 Merge branch '\''packaging'\'' into extpack commit e89e06e96e849ea20012757e345da9c4463c1fbe Author: Alan Garny Date: Fri Nov 25 17:52:40 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2efd55f43950cc7a63e32158c590cad6cbf3595f Author: Alan Garny Date: Fri Nov 25 16:42:58 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cb38bb086c88cccab571a6b4122ca93e6ee90a56 Author: Alan Garny Date: Fri Nov 25 16:11:18 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4fa996caf52333c584ca32334b6c5d1fa6ca4478 Author: Alan Garny Date: Fri Nov 25 16:08:55 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cc0b4acea2da089428c107cb0cf085eddc75aeb6 Author: Alan Garny Date: Fri Nov 25 16:07:29 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1117aeb38ee2bf745fd114977f5d70efc8ff1f12 Author: Alan Garny Date: Fri Nov 25 15:54:08 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 703a241129940d8e17a024d530eba71f907c70fd Author: Alan Garny Date: Fri Nov 25 15:51:58 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c21a6fd43a672aa5861c4ca1fc773d3d78dcff06 Author: Alan Garny Date: Fri Nov 25 13:08:51 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5423649ddadddd617d73e704b0537a0b5bd5083b Author: Alan Garny Date: Fri Nov 25 12:52:29 2016 +0100 Some minor cleaning up. commit 3ec3d44e8bb62508492555e40baa3f033272b8a9 Author: David Brooks Date: Fri Nov 25 23:27:00 2016 +1300 Correctly set the name of the zlib DLL. commit 69721475eca91df6d5ccf35c35738b1ffadaee94 Author: Alan Garny Date: Fri Nov 25 10:58:53 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6ee852b14595767c238cfec3c5b0ce272f205c4e Author: Alan Garny Date: Fri Nov 25 10:51:20 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 05a8cc39385bb2238267c5098c61af14fc6b4702 Author: Alan Garny Date: Fri Nov 25 10:39:09 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2492ae766b4024275ac8518e351e150b1e589ceb Author: Alan Garny Date: Fri Nov 25 10:24:42 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f750536276d4cb2d5ecbd3a4ca153e8fbc39e14e Author: Alan Garny Date: Fri Nov 25 10:20:59 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3b8a0dd3ce786a822be72940cf0594bc143c71b7 Author: David Brooks Date: Fri Nov 25 22:12:03 2016 +1300 We don'\''t need to specify CMAKE_CONFIGURATION_TYPES when building zlib. commit 932ff7f0d6663e48f6d53694a686f6fd616cb218 Author: David Brooks Date: Fri Nov 25 22:11:06 2016 +1300 Keep the zlib source and build directories away from git. commit 3b52a51da3566f67defa487a8a9d4ffc40e8002b Author: David Brooks Date: Fri Nov 25 22:09:46 2016 +1300 We no longer need to explicitly link to libz in the plugins that use the libzlib plugin. commit c351d53588ed510fb9b3013d4c21e642ab35a106 Merge: 7e7d52d42 03bb3e726 Author: Alan Garny Date: Fri Nov 25 10:06:36 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 03bb3e726274569936a0e1c20b8f078dc1552b07 Author: Alan Garny Date: Fri Nov 25 10:05:34 2016 +0100 Some minor cleaning up [ci skip]. commit 4a285d48f6d512f8e5ae6da160f75980d8d9331f Author: David Brooks Date: Fri Nov 25 22:04:10 2016 +1300 Set @rpath on macOS libraries when they are copied into the application bundle so that we no longer have to set it in objects that link the library (#1159). commit a9451afb9d8aca5dc01b516b4b7e6b7d31a6faed Merge: bb42863fa 30938a00e Author: David Brooks Date: Fri Nov 25 09:43:48 2016 +1300 Merge branch '\''master'\'' into extproject commit 60a7e1e6a666a53976bb1d24b5fd2bce8e3277fe Merge: f0fd62e7f 30938a00e Author: David Brooks Date: Fri Nov 25 09:41:49 2016 +1300 Merge branch '\''master'\'' into packaging commit 7e7d52d4287388b3f921a17f1ffbeba45f0855a6 Author: Alan Garny Date: Thu Nov 24 19:38:47 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 04c86287dc0bb82ed70dd08a93acf67d5f911825 Author: Alan Garny Date: Thu Nov 24 19:33:49 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 87a03b43a3785d7bcdd3dc4f19391b2c8ac6e895 Author: Alan Garny Date: Thu Nov 24 19:32:04 2016 +0100 Merge branch '\''master'\'' into issue1141. commit ac9e661cd83f24c9a466ce7c642c6b6dfcab51c8 Merge: 507a32c4a 30938a00e Author: Alan Garny Date: Thu Nov 24 19:20:21 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 30938a00e43447370a3f017c8ec53ce33d038958 Author: Alan Garny Date: Thu Nov 24 19:15:28 2016 +0100 Some minor cleaning up [ci skip]. commit 10eb1dbc2146a2a62f3fbb0b8208bd942bc9ae2d Author: Alan Garny Date: Thu Nov 24 19:14:39 2016 +0100 Improved the '\''rejection'\'' of various dialog boxes. commit 5a83e04d17ab21b2616f0cdb465cb8bc4d7538f4 Author: Alan Garny Date: Thu Nov 24 19:08:33 2016 +0100 DataStore plugin: improved our data selection process [ci skip]. commit 660fc6c573dc4e1efbca6a2ccd68dc003df71015 Author: Alan Garny Date: Thu Nov 24 18:52:51 2016 +0100 Simplified things when it comes to information/warning/etc. dialog boxes. commit 4de0d13bff03347798b0267751cad461ed3c8152 Author: Alan Garny Date: Thu Nov 24 18:27:24 2016 +0100 Central widget: enable/disable the open button of the Open Remote dialog box, depending on whether there is some text for the remote file [ci skip]. commit 507a32c4af1eb14acb4a937088a99973bcacf2b0 Author: Alan Garny Date: Thu Nov 24 17:37:01 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2ece003a6cd2c19e38eb4c80be93e7011f7fb2e3 Author: Alan Garny Date: Thu Nov 24 16:44:18 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 91f406bcf8c3739491e529243bade0118939a585 Merge: 48707224a 5becc64fc Author: Alan Garny Date: Thu Nov 24 11:32:21 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 5becc64fc5e13a0733c79e0aa0bcf8d79be30cb9 Author: Alan Garny Date: Thu Nov 24 11:27:23 2016 +0100 Some minor cleaning up [ci skip]. commit b469d9a13657938cbd565a1a71202748e95c7a05 Author: Alan Garny Date: Thu Nov 24 11:25:56 2016 +0100 Revert "Some minor cleaning up [ci skip]." This reverts commit 8ffce11c92fdd0a11f54b77c7a3137a183531730. commit 8ffce11c92fdd0a11f54b77c7a3137a183531730 Author: Alan Garny Date: Thu Nov 24 11:25:39 2016 +0100 Some minor cleaning up [ci skip]. commit 7815db7fa6c313440180685bf27580695df16708 Author: Alan Garny Date: Thu Nov 24 10:20:01 2016 +0100 Some minor cleaning up following issue #1159 [ci skip]. commit a307a130d020a0afc96975b325897179fb8d8ef1 Merge: bb4601ae8 966ca1dc9 Author: Alan Garny Date: Thu Nov 24 10:11:49 2016 +0100 macOS: simplified the build process when linking libraries (closes #1159). commit 48707224a262b2fd4acab712748bbccf389dee0b Author: Alan Garny Date: Thu Nov 24 09:59:36 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 966ca1dc9ea9628edabf1a81b3fea84d86af2b48 Merge: 0676ad3c2 bb4601ae8 Author: David Brooks Date: Thu Nov 24 21:10:50 2016 +1300 Merge branch '\''master'\'' into rpath_id commit 0676ad3c26344d41cf78ba28c68b03341ecac016 Author: David Brooks Date: Thu Nov 24 17:17:27 2016 +1300 There is no longer any need to specify EXTERNAL_BINARIES for plugins that use API packages (#1159). commit e009648f12d5cfec87d2c2f29cfc2ade61670847 Author: David Brooks Date: Thu Nov 24 17:09:49 2016 +1300 Set @rpath on macOS libraries when they are copied into the application bundle so that we no longer have to set it in objects that link the library (#1159). commit bb42863fa6cec1b7afb9b205eba2f66de3c4cf61 Author: David Brooks Date: Thu Nov 24 16:40:19 2016 +1300 Re-enable full system build. commit 36f8a358b854ce2bb9d4d345f059f9ccf1a66419 Author: David Brooks Date: Thu Nov 24 11:17:34 2016 +1300 Get ExternalProject build of zlib working under Windows. commit 014c27bacfdd36fa52ba650d795919c2bd3f44b4 Author: David Brooks Date: Thu Nov 24 11:15:59 2016 +1300 Add new parameters to ADD_PLUGIN for future improvements to handle EXTERNAL packages. commit ff24474f45b24effd917ab7a2a3d9fbeda817917 Author: Alan Garny Date: Wed Nov 23 17:48:26 2016 +0100 Some minor cleaning up. commit 4d9f06c191dd00e7105a5741f7d45de7cb43590c Merge: 2841a6d51 bb4601ae8 Author: Alan Garny Date: Wed Nov 23 17:01:12 2016 +0100 Merge branch '\''master'\'' into issue1141. commit bb4601ae8db75d4875c89574fdf3dab9dc057a8c Author: Alan Garny Date: Wed Nov 23 16:40:18 2016 +0100 Some minor cleaning up [ci skip]. commit 2841a6d51cef3e4eb83a124a433aff2d179df220 Author: Alan Garny Date: Wed Nov 23 16:31:44 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 90549a3e4b09d5d03b861a9c47da0f5b3d87ce40 Author: Alan Garny Date: Wed Nov 23 16:21:16 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5e9ec47fe25a98ed0555a6992e1900ccdc2e7cbc Author: Alan Garny Date: Wed Nov 23 15:38:24 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3520addbe6fdcc0d3c0e29472b7901cfdbf5d837 Author: Alan Garny Date: Wed Nov 23 14:46:27 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). PMR window: only show an error through a message box if we already have some exposures, which means that we don’t potentially break the user’s flow if an error occurs when starting OpenCOR. commit 275c5fc1197461b58c0ba0a2dd8b97ff2f4ed554 Author: Alan Garny Date: Wed Nov 23 11:22:36 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 143540e3fe753f31d02540828817b311e5b06457 Author: Alan Garny Date: Tue Nov 22 18:43:30 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). Not sure why up to a 30-second delay was used to show exposure files since our GUI only allows one set of exposure files to be retrieved and shown at a time, so removed all of that timer-related stuff. commit 5571631cd9d84fae32858f0c742fa2afd89f63fd Author: Alan Garny Date: Tue Nov 22 17:04:47 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7e368368ac7bec8ce443dda1cdc495c766455cb7 Author: Alan Garny Date: Tue Nov 22 15:44:33 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit ecb11495c7a21486ee8a92c1933657d7293b0a87 Author: David Brooks Date: Tue Nov 22 12:25:57 2016 +1300 Work on zlib as ExternalProject for Windows. commit 3cd2ae01c1fadd7a2bd4ae82e9d553e0c0be41ff Author: David Brooks Date: Tue Nov 22 11:54:43 2016 +1300 Fix typo. commit c965fcf2c856d8c924f637cfd07c369209fd4871 Merge: e407db275 c90e38140 Author: David Brooks Date: Tue Nov 22 10:13:21 2016 +1300 Merge branch '\''master'\'' into extproject commit e407db2758be88c17231ac0f85a22b6fbb558a09 Author: David Brooks Date: Tue Nov 22 09:46:13 2016 +1300 TEMP: build a minimal system to test ExternalProject. commit 9ef42805df4cc207e610937979559d2ea744b6ff Author: David Brooks Date: Tue Nov 22 09:45:24 2016 +1300 Work on using Cmake'\''s ExternalProject module for third party builds. commit 75d601b296145e9c589e87bfa0eabaf01ed77650 Author: Alan Garny Date: Fri Nov 18 20:44:45 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d8c8d7d8d513670ce183ac081851c793148c2e06 Author: Alan Garny Date: Fri Nov 18 20:44:28 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 07ada8892ecefe0114820ccf3e0b562f0532bd26 Author: Alan Garny Date: Fri Nov 18 15:43:17 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 59295259bab175962e52281f5ec9ffb0bd89ae78 Author: Alan Garny Date: Fri Nov 18 15:37:36 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 9d95ef276d072ebb35ab82f6f8ddf6167ee23830 Merge: 1fc10a63b c90e38140 Author: Alan Garny Date: Fri Nov 18 13:08:58 2016 +0100 Merge branch '\''master'\'' into issue1141. commit c90e38140dba253733b72f9c259f4499f353b507 Author: Alan Garny Date: Fri Nov 18 11:18:11 2016 +0100 General: fixed a small with the desktop icon not showing on Ubuntu (closes #1147). commit f1fd82bbaa07bd55d6de26e3effb82290fa6b7a7 Author: Alan Garny Date: Fri Nov 18 10:31:37 2016 +0100 Some minor cleaning up. commit 24c5a9aad24af426b1bc3aec18f55534fc4cced3 Author: Alan Garny Date: Thu Nov 17 19:39:15 2016 +0100 Some minor cleaning up [ci skip]. commit 4bf505a3f0386fd3abb43025e1de6fdd7e9151ab Author: Alan Garny Date: Thu Nov 17 19:19:27 2016 +0100 New snapshot. commit bb984b5520f866e62e5ce18b38334a919f4bee46 Author: Alan Garny Date: Thu Nov 17 19:14:11 2016 +0100 Windows: now deploy the Universal C Runtime files needed by OpenCOR (closes #1150). commit 89bf9a292a30090753930ddba35c303b17f812b0 Author: Alan Garny Date: Thu Nov 17 13:41:14 2016 +0100 Windows: now deploy the Universal C Runtime files needed by OpenCOR (closes #1150). commit 87c9951dfcd43ad3759e37e87a55caeed98eb183 Merge: 59c2005fe db28e8e97 Author: Alan Garny Date: Thu Nov 17 13:10:28 2016 +0100 Web Browser window: made sure that all Web Inspector windows are closed upon quitting OpenCOR (closes #1151). commit 59c2005fe11e483486f4a44e9473012e0a2e0349 Author: Alan Garny Date: Thu Nov 17 13:02:36 2016 +0100 Slight update to our downloads page [ci skip]. commit db28e8e97b1b5efbb8abf56ab6a015de723e5134 Author: Alan Garny Date: Thu Nov 17 11:53:24 2016 +0100 Web Browser window: some work towards ensuring that our Web Inspector windows get closed when quitting OpenCOR (#1151). commit 18cbd05fb384d4879810882f821ee6a61ad8842c Author: Alan Garny Date: Thu Nov 17 11:51:36 2016 +0100 Some minor cleaning up [ci skip]. commit b4952fedec9048ba2346ea51d3509451ff5b4c84 Author: Alan Garny Date: Thu Nov 17 11:38:40 2016 +0100 Web Browser window: some work towards ensuring that our Web Inspector windows get closed when quitting OpenCOR (#1151). commit 50bb49411769e389a4bc98050901ef7c983fc6f7 Author: Alan Garny Date: Thu Nov 17 11:21:44 2016 +0100 Some minor cleaning up [ci skip]. commit 1fc10a63b460559c98d0c3d7e8692fcbc3a15f98 Merge: 237dacaa2 1e9d3da28 Author: Alan Garny Date: Wed Nov 16 18:35:52 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 1e9d3da280bc3d7a0dd493bed76866c5fabe4ed9 Author: Alan Garny Date: Wed Nov 16 18:33:49 2016 +0100 Some minor cleaning up. commit 7a21d1e69b9585633e0545e57c2d6dbd4ad5486a Author: Alan Garny Date: Wed Nov 16 17:40:35 2016 +0100 Raw Text view: fixed a crash that occurred when trying to save a new file (closes #1155). commit 433532652130afdde4f07e786462b294a81352a1 Author: Alan Garny Date: Wed Nov 16 17:39:51 2016 +0100 Some minor cleaning up [ci skip]. commit 237dacaa2bf91cfe17fd547eb3e12b7200d9acd8 Merge: c59247186 55d2c8c9b Author: Alan Garny Date: Wed Nov 16 17:15:37 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 55d2c8c9b223ef31926eaddcc8ef3409f60d23ef Author: Alan Garny Date: Wed Nov 16 17:14:38 2016 +0100 Some minor cleaning up. commit c592471864aa82259ce54ddd22b74020d2e2ebfb Author: Alan Garny Date: Wed Nov 16 17:07:34 2016 +0100 Merge branch '\''master'\'' into issue1141. commit b45a17b9ebb973dbc1467865cda25cb5d09c3a16 Merge: 88ea2fb59 34181844c Author: Alan Garny Date: Wed Nov 16 15:39:59 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 34181844c75580fdfaf129015dcbc8a8f34f03d8 Author: Alan Garny Date: Wed Nov 16 15:37:57 2016 +0100 Some minor cleaning up [ci skip]. commit 88ea2fb59199244b4063ed77a7244be7579c7c39 Merge: 310ce9fd9 8024ba414 Author: Alan Garny Date: Wed Nov 16 15:34:28 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 8024ba414ffd416f8972a253231d450028b2de6d Author: Alan Garny Date: Wed Nov 16 14:51:45 2016 +0100 Web Browser window: now keep track of the active URL [ci skip]. commit 172e79ba9f4d24b6785d389b656cf9d4a64dbd24 Author: Alan Garny Date: Wed Nov 16 14:28:37 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. Note that we don’t want, in its constructor, WebViewerWidget to go to its home page. Indeed, if we were to do that, then our Help window wouldn’t have the state of its back button updated when clicking on a new Help page (e.g. the “What is new?” page). This is because HelpWindowWidget would already have about:blank has a back item in its history. So, instead, it should be a WebViewWidget-derived class that should go to the home page, if needed (as is now the case with WebBrowserWindowWidget, for example). commit 1951c673c880b4b0d4929017a3fa982695a098d9 Author: Alan Garny Date: Wed Nov 16 14:18:48 2016 +0100 Some minor cleaning up [ci skip]. commit 04edf15aa1a4b758e960445707b790635e6ba98f Author: Alan Garny Date: Wed Nov 16 11:03:41 2016 +0100 Some minor cleaning up [ci skip]. Well, in the end, it’s better to use QWebView::load()/reload() unless QWebView::setUrl() is really necessary (e.g. in HelpWindowWidget::retranslateUi()). Indeed, if we think of the Help window, to go to a given page and then go back to the home page by clicking the home page button will result in the Help window flashing if we were to use QWebView::setUrl() while there is none when using QWebView::load(). commit 3589cf5e6c9e7dd4f2324bb1f791698108a159b4 Author: Alan Garny Date: Wed Nov 16 10:38:32 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. WebBrowserWindowWindow: make sure that we keep track of the URL to be loaded so that our progress bar is always correct. commit 8327f946110583d75c239decf80fe8b775aedd97 Author: Alan Garny Date: Tue Nov 15 20:04:02 2016 +0100 Various cleaning up [ci skip]. Among other things, we made sure that load/saveSettings() are called within a new and non-empty group... commit 110c6c86b1882f4f0039e483e9ecc3e27cd0601f Author: Alan Garny Date: Tue Nov 15 19:09:52 2016 +0100 Some minor cleaning up [ci skip]. QWebViewer->setUrl() works better in the end (it loads the URL straightaway), so we may as well use it… commit 43074eb8ded95829cafb05039426fa8bbf09ad3b Author: Alan Garny Date: Tue Nov 15 18:43:46 2016 +0100 HelpWindowWidget: some minor cleaning up [ci skip]. commit 190bedc9b22117880923240d1518084d96132e61 Author: Alan Garny Date: Tue Nov 15 18:31:55 2016 +0100 Some minor cleaning up [ci skip]. commit be3f89582dc686a128f7bfc3fd62518545bb748e Author: Alan Garny Date: Tue Nov 15 18:30:06 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 419c35e6513642de1f77ae05b0d8cfc451a98c95 Author: Alan Garny Date: Tue Nov 15 18:29:46 2016 +0100 Some minor cleaning up [ci skip]. commit b09e7e098a85532eb8c1b2a5a9d1e46c4956d7be Author: Alan Garny Date: Tue Nov 15 17:28:39 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 0195a860299f0ec70f0693722ffe02eec683b7eb Author: Alan Garny Date: Tue Nov 15 16:04:53 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 25928ca225d9a2e5de2a99112af07dffe8ff1e13 Author: Alan Garny Date: Tue Nov 15 15:56:52 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 211e34fe19a6419ec92a339d9b151a1df7adb0e4 Author: Alan Garny Date: Tue Nov 15 15:39:22 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit b8647ce7ee9ec09afc819d65945b9e293c5c5982 Author: Alan Garny Date: Tue Nov 15 15:26:18 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 7fa944506f226820ec11109f47b2bb7518af169e Author: Alan Garny Date: Tue Nov 15 13:31:39 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 1ff1bc97ae7ae0560340bcd5052a57bebd03a5b6 Author: Alan Garny Date: Tue Nov 15 13:10:10 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 5800dd8f7510235011f8bb2988804783500cd3fa Author: Alan Garny Date: Tue Nov 15 13:07:59 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 4ec71f35262d26e22c9cce1b8be73001c6540921 Author: Alan Garny Date: Tue Nov 15 11:38:37 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 977eae2d69459615fd401ecad84793786cc18b74 Author: Alan Garny Date: Tue Nov 15 11:23:46 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 9372ff510898557fa955b137aafcaf4f082adca3 Author: Alan Garny Date: Tue Nov 15 11:06:45 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit 7fbec8005b25c5f31b0d5e2990075f9ec9a71bd4 Author: Alan Garny Date: Tue Nov 15 10:36:18 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156) [ci skip]. commit f8c2c4770752570082393a0049adda56befa0177 Author: Alan Garny Date: Tue Nov 15 09:51:36 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget (#1156). commit a348c5ceba81774700509d4788f9d3555c7e02db Merge: b4f78caef 236685599 Author: Alan Garny Date: Mon Nov 14 19:09:38 2016 +0100 Web Browser window: the OpenCOR URL scheme is now supported (closes #1152). commit b4f78caef059065d18f153ea7dd0c7131807b2a3 Author: Alan Garny Date: Mon Nov 14 18:14:20 2016 +0100 Slight update to our downloads page [ci skip]. commit 23668559965d5da44b59f4a707449e467d1864ec Author: Alan Garny Date: Mon Nov 14 18:10:39 2016 +0100 Web Browser window: the opencor protocol is now supported (#1152). commit c7d9fce7a4e007f002388179677566f8c3185d94 Author: Alan Garny Date: Mon Nov 14 17:46:06 2016 +0100 Some minor cleaning up [ci skip]. commit efbd4cc84f6c1e196870610a330f2807df02a896 Author: Alan Garny Date: Sun Nov 13 17:14:52 2016 +0100 Some minor cleaning up [ci skip]. commit 310ce9fd95cade1ff468f1601ed6d014aa5846b7 Merge: cccbff6df 9ce5b81e8 Author: Alan Garny Date: Fri Nov 11 14:54:10 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 9ce5b81e882a1695a5dcad6d9fb1e03c6b00c297 Author: Alan Garny Date: Fri Nov 11 14:48:37 2016 +0100 Some minor cleaning up [ci skip]. commit cccbff6df2377e81ed8812365b9b4dd9e0f7504a Merge: c6201b10e ff0874145 Author: Alan Garny Date: Fri Nov 11 13:41:55 2016 +0100 Merge branch '\''master'\'' into issue1141. commit ff0874145c8c1fdde46185b3eddceafcfe44f5f9 Author: Alan Garny Date: Fri Nov 11 13:40:48 2016 +0100 Some minor cleaning up [ci skip]. commit 675e46db62ffbe7d108b403a736ae03e384ddd6d Author: Alan Garny Date: Fri Nov 11 13:05:29 2016 +0100 Some minor cleaning up [ci skip]. commit c6201b10edef3f19899127bbe8024a0fd0188d85 Merge: e3dea3c70 1c6a26d08 Author: Alan Garny Date: Thu Nov 10 19:44:54 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 1c6a26d080f20ff6659aab1e1ae76deea175ccdb Author: Alan Garny Date: Thu Nov 10 19:37:27 2016 +0100 Various improvements to our FileType interface. commit 87027cde5c6dc67e9068e7cdbd3e9c40697bf1af Author: Alan Garny Date: Thu Nov 10 19:35:33 2016 +0100 Various improvements to our FileType interface. commit a831de79e9de2fe37910e5430b04ada55ef5e05e Author: Alan Garny Date: Thu Nov 10 19:00:30 2016 +0100 Slight improvement to our internationalisation interface [ci skip]. commit e3dea3c707893524b8f1b4a6b8cfb337673db921 Author: Alan Garny Date: Thu Nov 10 18:36:57 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c4e5eb3603fa5b44b00db2ecb311a22329e86387 Author: Alan Garny Date: Thu Nov 10 18:36:23 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4e7c747d2232b98d3942a5a77c1b32886b5e0787 Merge: dbf2bd710 0210c6465 Author: Alan Garny Date: Thu Nov 10 18:03:49 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 0210c64652c8e97f05bc03b58b9b9fad349cd198 Author: Alan Garny Date: Thu Nov 10 17:32:10 2016 +0100 Some minor cleaning up. commit 7f83c6a8fb137a3b965975d0a1cb16187b6bf761 Author: Alan Garny Date: Thu Nov 10 17:06:08 2016 +0100 Some minor cleaning up. commit dbf2bd710d04c277a71abd222276fe9cbf9fb518 Merge: e8fabc3f3 803315e74 Author: Alan Garny Date: Thu Nov 10 11:09:25 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 803315e74a36b5f57d468e773ca844c6e40d03bb Author: Alan Garny Date: Thu Nov 10 11:07:24 2016 +0100 Slight update to our what'\''s new page [ci skip]. commit f793acd33fd6ad71af071fbfae1aae474ab85a6a Merge: cec1e3119 300d669d8 Author: Alan Garny Date: Thu Nov 10 11:05:12 2016 +0100 General: fixed a small with the desktop icon not showing on Ubuntu (closes #1147). commit 300d669d8dfb30e0c0d7e471f05c4a9cc8e77015 Author: Alan Garny Date: Thu Nov 10 10:43:21 2016 +0100 General: some work on fixing a small problem with the desktop icon not showing on Ubuntu (#1147). commit 6ca5ba4f0c023de6fc855749f9bc68ebf86d9bda Author: Alan Garny Date: Thu Nov 10 10:41:39 2016 +0100 General: some work on fixing a small issue with the desktop icon not showing on Ubuntu (#1147). commit 8777fa05a27a9effec4bb94b4a67ee3afc208298 Merge: d912d2608 cec1e3119 Author: Alan Garny Date: Thu Nov 10 10:40:13 2016 +0100 Merge branch '\''master'\'' into issue1147 commit cec1e311900a24bb89a661cb3f5ff9f41933fb54 Author: Alan Garny Date: Thu Nov 10 10:39:29 2016 +0100 Some minor cleaning up [ci skip]. commit d912d26083751d4d36c61a5b7a53f2c051fd642b Merge: ae7391081 725864cbc Author: Alan Garny Date: Thu Nov 10 10:31:45 2016 +0100 Merge branch '\''master'\'' into issue1147 commit 725864cbc87f7c099c60de52d704cc951bc6a150 Author: Alan Garny Date: Thu Nov 10 10:31:20 2016 +0100 Some minor cleaning up [ci skip]. commit ae7391081442440d30084bd3e2728e295b588ab9 Merge: ebffe80e1 440078f11 Author: Alan Garny Date: Thu Nov 10 10:19:35 2016 +0100 Merge branch '\''master'\'' into issue1147 commit 440078f1129c3b48a4cc874d671206a9c6615f59 Author: Alan Garny Date: Thu Nov 10 10:18:56 2016 +0100 Some minor cleaning up [ci skip]. commit e8fabc3f352ddab09e07f27da017d197d20241fa Merge: 21dcf0a75 ebffe80e1 Author: Alan Garny Date: Wed Nov 9 17:48:19 2016 +0100 Merge branch '\''master'\'' into issue1141. commit ebffe80e14a45ed0bc5d54db3581f6dcd9b1afaf Merge: 6e578f49a 876ce9f9f Author: Alan Garny Date: Wed Nov 9 17:43:42 2016 +0100 libgit2: upgraded to version 0.24.3 (closes #1145). commit 6e578f49ac30deddf352eadec245962193b1469e Author: Alan Garny Date: Wed Nov 9 17:15:10 2016 +0100 Slight updates to the downloads pages [ci skip]. commit 876ce9f9fcac8f267bf991651985c8927b016158 Author: Alan Garny Date: Wed Nov 9 17:09:15 2016 +0100 libgit2: some work towards upgrading to version 0.24.3 (#1145). commit 3a74a52d03722d34765de3498d704cf188e104ea Author: Alan Garny Date: Wed Nov 9 16:57:46 2016 +0100 libgit2: some work towards upgrading to version 0.24.3 (#1145). commit bdd5aa145482cf56579ab8eb4c132bcc307b146d Author: Alan Garny Date: Wed Nov 9 15:06:47 2016 +0100 New snapshot. commit b97535a0ac39caec1863fddc0f7015ce6560faeb Author: Alan Garny Date: Wed Nov 9 15:05:09 2016 +0100 Revert "New snapshot." This reverts commit 73826ebaa8177eb609fa45ab760b0473161b5925. commit 73826ebaa8177eb609fa45ab760b0473161b5925 Author: Alan Garny Date: Wed Nov 9 14:55:23 2016 +0100 New snapshot. commit 83bb47a24a10827e1da3dad4f2d0b1d3f04d1f12 Author: Alan Garny Date: Wed Nov 9 14:47:15 2016 +0100 Web Browser window: put in the correct category (Miscellaneous) and created a (blank for now) documentation page for it [ci skip]. commit 5c45502b96fcfe6e3d0268d96dbe802c99e28eb6 Author: Alan Garny Date: Wed Nov 9 14:41:09 2016 +0100 Revert "New snapshot." This reverts commit 85dabef9ec20fa4c068d799ae3a62ff749e6761f. commit 85dabef9ec20fa4c068d799ae3a62ff749e6761f Author: Alan Garny Date: Wed Nov 9 13:32:07 2016 +0100 New snapshot. commit 21dcf0a75b2b65094a0dcc5fd35217841115b94e Author: Alan Garny Date: Wed Nov 9 13:04:17 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3136b269950afb9d5b95d6bd7cec50183c24c411 Author: Alan Garny Date: Wed Nov 9 13:02:25 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 816b008da7f5670f98f70752f1a26ea896e209de Merge: 94655b0c6 d826c24c9 Author: Alan Garny Date: Wed Nov 9 11:45:25 2016 +0100 Merge branch '\''master'\'' into issue1141. commit d826c24c9905600d947b1e85d46dd1fee1a1589b Author: Alan Garny Date: Wed Nov 9 11:43:02 2016 +0100 PMR window: improved the GUI. We used to have a proper button for the reloading of the list of exposures, but it didn’t really look good. So, instead, we now have another tool bar with our filter label/value and reload button. commit a90b695787f4fe2b3be557b9dfce2ddace24ecf5 Author: Alan Garny Date: Wed Nov 9 11:03:35 2016 +0100 Web Browser window: improved the GUI. We used to have a proper button for the reloading of a page, but it didn’t really look good. So, instead, we now have another tool bar with our URL value and reload button. commit 94655b0c6e0f94124bad91f4be88702f3168fb96 Author: Alan Garny Date: Mon Nov 7 17:59:54 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cd7492c157b773658e00d2387b1b936b5cb32329 Author: Alan Garny Date: Mon Nov 7 17:24:00 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). Also it’s nice to see the progress of, say, cloning a workspace, there are cases where we can’t get the progress of an action (e.g. retrieve a user’s workspaces). So, to avoid having to determine when we should be having a progress busy widget or a simple one, as well as handling different types of busy widgets in the PMR and PMR Workspaces window, we now only use a simple busy widget. commit a921c93672e3f3f2697fd30af2860813e87c40e0 Author: Alan Garny Date: Mon Nov 7 16:47:15 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c8ee2c87537ebe6112af4babcbc4d07ac2f83b2a Author: Alan Garny Date: Mon Nov 7 15:57:41 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 327f53e124b0e35916844c03de868be7adc39f4c Merge: 8db7f2900 392bc28fb Author: Alan Garny Date: Mon Nov 7 14:46:38 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 392bc28fb4bf8fd7692769a387fadff956d17cbd Author: Alan Garny Date: Mon Nov 7 14:46:23 2016 +0100 Some minor cleaning up [ci skip]. commit 8db7f29001e94fe269db84b8a65b5ca518f77c91 Author: Alan Garny Date: Mon Nov 7 10:23:53 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit aaaa7a614de687c82013ec9bd4422ebc57691398 Author: Alan Garny Date: Fri Nov 4 18:39:44 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1cd9daa5448c350b8a4a3c07c9245b44c1bc0a4c Author: Alan Garny Date: Fri Nov 4 18:21:00 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5a0fb3fcbad1800f374bd35534d344d0e8753ded Author: Alan Garny Date: Fri Nov 4 17:08:27 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit ac8dda7b2f34ebc8881f9f08c62a57ea8744739b Author: Alan Garny Date: Fri Nov 4 16:30:06 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 51f7cffe68c31e14c6aeb117094817566096a74b Author: Alan Garny Date: Fri Nov 4 16:07:40 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 00e58b18e94d6cd389b12c8e209d183dade44b05 Author: Alan Garny Date: Fri Nov 4 16:04:10 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4bb76f11c71a3846cd17665859377e2d399d6f89 Author: Alan Garny Date: Fri Nov 4 15:35:15 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit da3946b601f48b11a0cdaeb4ed37385e5bc049fa Author: Alan Garny Date: Fri Nov 4 15:26:23 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit da6327e08210ff2cbadc05f886ef07cc8b846f78 Author: Alan Garny Date: Fri Nov 4 15:20:24 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cd47bf9dac88817721ec7a297f5fe5cdde72e90e Author: Alan Garny Date: Fri Nov 4 15:14:34 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 383f162c82ba610910be0e35c9bb69ba007e37e9 Author: Alan Garny Date: Fri Nov 4 15:11:58 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 85d0300ae5d8b63f5426120c5242a3ad3fe42e43 Author: Alan Garny Date: Fri Nov 4 15:01:10 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d571732023a0968bec6fdfdec4b8ee9f1e94f978 Author: Alan Garny Date: Fri Nov 4 14:59:59 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 652742d51b2df0274adde4ecfa9f53b74c32a2cb Merge: 5d978d0f6 a3e5b4934 Author: Alan Garny Date: Fri Nov 4 14:58:20 2016 +0100 Merge branch '\''master'\'' into issue1141. commit a3e5b4934016410d566974ab1e4ae8f908112675 Author: Alan Garny Date: Fri Nov 4 14:58:06 2016 +0100 Some minor cleaning up [ci skip]. commit 5d978d0f671825ac8dcbb93bb9476e97a57e7e61 Author: Alan Garny Date: Fri Nov 4 14:57:33 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit aa7d505beee936e59458a9e1c3eb66e8b0a5f150 Author: Alan Garny Date: Fri Nov 4 14:54:17 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 98d32eeaf2781bf0279d538d26591fd335b6a394 Author: Alan Garny Date: Fri Nov 4 14:02:15 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit aff354f6fb2093e25549dd567936089ae0ebb5b3 Merge: 4129ed074 fbe1e5493 Author: Alan Garny Date: Fri Nov 4 13:31:45 2016 +0100 Merge branch '\''master'\'' into issue1141. commit fbe1e54931f24f57bbe40b0abb8ed610098cd4de Author: Alan Garny Date: Fri Nov 4 13:31:24 2016 +0100 Some minor cleaning up [ci skip]. commit 4129ed074b6589df6398ae924832675e9fef456d Author: Alan Garny Date: Fri Nov 4 13:25:50 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 789fc2363df6da389b37fadc8944045b2a8a9008 Author: Alan Garny Date: Fri Nov 4 11:51:18 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 532f01f0554b68a11961571a06beea79e10b04e3 Author: Alan Garny Date: Fri Nov 4 11:49:23 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 90ca97891b928e6cfc306c7b7e77abd81c5fbea0 Author: Alan Garny Date: Fri Nov 4 11:32:41 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 08b4204f9883f471be5ce4c6d184a55d19acc8e5 Author: Alan Garny Date: Fri Nov 4 11:30:17 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2a6103150597251dbc9ad4ac098ddc445774cbbc Author: Alan Garny Date: Fri Nov 4 11:28:57 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cf77e5a0e3e1f94399c69f67e1ea4af5fed12a4f Author: Alan Garny Date: Fri Nov 4 11:20:25 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 47a141c6eae808a63a26c3f0006489f35bf0f123 Author: Alan Garny Date: Fri Nov 4 11:14:23 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit bd63f7c5ca70bfc956ed01d942af2420416b5c3c Author: Alan Garny Date: Fri Nov 4 11:03:40 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a8c1f6874bdd3840529cecde0d14c5a87ec1aab6 Author: Alan Garny Date: Fri Nov 4 10:11:14 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit aeb88d941733b9f7a2d7d9508dcda52e5574355a Author: Alan Garny Date: Thu Nov 3 11:31:42 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a481b62a6a802bf0a206ac42c6732e7906c6383a Author: Alan Garny Date: Thu Nov 3 11:24:25 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a7abdfb6733a0b320eec82bcda10d305f2920036 Author: Alan Garny Date: Wed Nov 2 18:41:54 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7870e504c57cc6781582d3a27bf17c3ff6cced66 Author: Alan Garny Date: Wed Nov 2 18:29:39 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4c2a998eedb287f8258e986d44502325dad4fab1 Author: Alan Garny Date: Wed Nov 2 18:15:14 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7aa58e24993363524f5ccc4c2663ac96c66bf225 Author: Alan Garny Date: Wed Nov 2 18:04:55 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3c4580d456cadb7dd136d09239a047dd18bfb33d Author: Alan Garny Date: Wed Nov 2 17:50:11 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 57abb236fbf0fba8bd2778ace17237c039633896 Author: Alan Garny Date: Wed Nov 2 17:48:15 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 131eb00899239041151155e69cabb74750cdf58a Author: Alan Garny Date: Wed Nov 2 17:35:41 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 24b0b897a17a3a5fc82fe9925f46644bd01d83b0 Author: Alan Garny Date: Wed Nov 2 17:14:33 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 12456105d30a28a6c447e035beee088c53bef919 Author: Alan Garny Date: Wed Nov 2 17:10:24 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cedb17a1fb9e06045ce078c97a1c25516f84ff08 Author: Alan Garny Date: Wed Nov 2 16:49:28 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f5afa13d29e3a671e4da3ff94bcd7d789ec2275b Author: Alan Garny Date: Wed Nov 2 16:28:50 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7aca8cc2b8861c32ed31c06544119443219fcc83 Author: Alan Garny Date: Wed Nov 2 16:28:04 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a08c80f01d9ac5e5b83f9a7aede2763d2974a816 Author: Alan Garny Date: Wed Nov 2 16:25:04 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6a345800833c77a189d28803b43abeb78df10cdb Author: Alan Garny Date: Wed Nov 2 16:18:35 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e095774ffb2228f5ae5331af1c3e8510da04d7b1 Author: Alan Garny Date: Wed Nov 2 16:18:03 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 31bbaa0af539277ea7d1142cf779d409702a926c Author: Alan Garny Date: Wed Nov 2 16:17:39 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 583061f10c9eb5a45bbea84d96449abbee70ff17 Author: Alan Garny Date: Wed Nov 2 15:24:06 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2a9ffeb41b944253e8c8506560b4aa0b838839df Author: Alan Garny Date: Wed Nov 2 15:19:46 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b32e029e4ba370aae291834c0666435d56428439 Author: Alan Garny Date: Wed Nov 2 14:50:45 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 7ad8a90cde64eff3df3f75f8d6376126cb702496 Merge: 23ef4e17a dd53b3424 Author: Alan Garny Date: Wed Nov 2 14:32:01 2016 +0100 Merge branch '\''master'\'' into issue1141. commit dd53b3424e7853ff96d790f7140a03a4390ce320 Author: Alan Garny Date: Wed Nov 2 14:29:14 2016 +0100 Some minor cleaning up [ci skip]. commit 9e28b7faffb3d3a3375e88218071650b48cd1574 Author: Alan Garny Date: Wed Nov 2 14:27:43 2016 +0100 Some minor cleaning up [ci skip]. commit 23ef4e17abefe5c67b54546646a93f9c2bea8039 Author: Alan Garny Date: Wed Nov 2 13:56:46 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 16335ff577c56b7b2ded96865895b986a18303da Author: Alan Garny Date: Wed Nov 2 13:34:44 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a4642e079d50d1595e2a08ea2599d55995c442f3 Author: Alan Garny Date: Wed Nov 2 13:16:14 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4b45068feb3f5d98bf3fee9e1dcfa3b25ab447c6 Author: Alan Garny Date: Wed Nov 2 12:51:59 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f635747225e6ff9189f2e4ed64a29ab7da8e0968 Author: Alan Garny Date: Wed Nov 2 12:42:18 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b68789f8efcff8a4146c389705cf248f514ef09d Author: Alan Garny Date: Wed Nov 2 11:47:24 2016 +0100 Some minor cleaning up [ci skip]. commit 7515b9724d3add2c1cb831974414cf731c854dbf Author: Alan Garny Date: Wed Nov 2 11:45:34 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b20f64f907fec9c13e79f5ca164d14bccd0ef459 Author: Alan Garny Date: Wed Nov 2 11:07:16 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 09b954a5f096c14af18461bc81d40ecd111b36fe Author: Alan Garny Date: Wed Nov 2 10:54:26 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3100586c2a1762f2598dd81b886458aee96b138a Author: Alan Garny Date: Wed Nov 2 10:47:19 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a8100a840570c0aa290eda478c3d1208683c3b68 Author: Alan Garny Date: Wed Nov 2 10:24:22 2016 +0100 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 9dc6bac7f005756b82e2ca66e2f6117235eb2df2 Merge: 097fa0a10 6e4098c10 Author: Alan Garny Date: Wed Nov 2 09:51:46 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 6e4098c10fc912a8ddd16576756c13b6d8f181c9 Author: Alan Garny Date: Wed Nov 2 09:51:05 2016 +0100 Slight update to the user'\''s documentation [ci skip]. commit 097fa0a101f05687af2c6933487638eb5450feb3 Merge: 3ab9f9db1 e5a89a1e6 Author: Alan Garny Date: Mon Oct 31 19:04:32 2016 +0100 Merge branch '\''master'\'' into issue1141. commit e5a89a1e6e2cf7379f640dd1b8bf88882526bc25 Author: Alan Garny Date: Mon Oct 31 19:00:42 2016 +0100 Some minor cleaning up [ci skip]. commit 3ab9f9db13cddebb38ddc35de64ac198daba0cf9 Merge: 2c51e1555 69d4c9ab0 Author: Alan Garny Date: Mon Oct 31 10:13:24 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 2c51e15551dc10892c72038aff2fc0be52e53d0d Merge: 4be08ef20 229c3a8f7 Author: Alan Garny Date: Mon Oct 31 10:13:20 2016 +0100 Merge branch '\''master'\'' into issue1141. commit 69d4c9ab02ba6ea0ecc069b8f478e0424956a739 Author: Alan Garny Date: Mon Oct 31 10:12:46 2016 +0100 Some minor cleaning up [ci skip]. commit 229c3a8f7a4f19dae3f9544fbfd01b8350e30940 Author: Alan Garny Date: Mon Oct 31 10:00:24 2016 +0100 Going back to a simpler management of some objects [ci skip]. commit 236019aa1f1bbcfb29e6dcb6e89287dce3b2f8cd Author: Alan Garny Date: Mon Oct 31 09:53:59 2016 +0100 Going back to a simpler management of some objects [ci skip]. commit 3819f1d8fb7b5c0e0c7b57d14e9a2f3bc7a1db8d Author: Alan Garny Date: Mon Oct 31 09:42:32 2016 +0100 Going back to a simpler management of some objects [ci skip]. commit 14fdfed0b93344293972bc4dc476919f82ebe4e3 Author: Alan Garny Date: Mon Oct 31 09:33:54 2016 +0100 Some minor cleaning up [ci skip]. commit ebf55f09b1c72c7b7d04ad2091975732e2b206c3 Author: Alan Garny Date: Sun Oct 30 21:02:56 2016 +0100 Going back to a simpler management of some objects [ci skip]. commit 85f3c8148734c8f0e2bdd463d880dd526e68567e Author: Alan Garny Date: Sun Oct 30 20:05:19 2016 +0100 Some minor refactoring [ci skip]. commit cee9161ad47790280070f77762b18aecd78bea3b Author: Alan Garny Date: Sun Oct 30 19:09:37 2016 +0100 Slight improvements to CombineArchiveIssue and CombineArchiveIssues [ci skip]. commit 1fd22b64ca2fcca7ed93207250078e0d64e7d9e6 Author: Alan Garny Date: Sun Oct 30 19:06:46 2016 +0100 Some minor cleaning up [ci skip]. commit 2cb3ec5a374aeed9bbc04e992459e52d6c712748 Author: Alan Garny Date: Sun Oct 30 18:48:26 2016 +0100 Slight improvements to CombineArchiveIssue and CombineArchiveIssues [ci skip]. commit 12fe3883be6093cfac1e87562dd79fe76750657c Author: Alan Garny Date: Sun Oct 30 17:33:50 2016 +0100 Some minor refactoring [ci skip]. commit de7957431ce042455ecad72a7568875cc1c62a3a Author: Alan Garny Date: Sun Oct 30 16:20:53 2016 +0100 Slight improvements to SedmlFileIssue and SedmlFileIssues [ci skip]. commit 997a0400943b774c53206cccdf9e3ac52e70117c Author: Alan Garny Date: Sun Oct 30 16:02:10 2016 +0100 Some minor cleaning up [ci skip]. commit bbcca374605d1ff21425e3b8762d74e6d7074c66 Author: Alan Garny Date: Sun Oct 30 15:29:49 2016 +0100 Some minor refactoring [ci skip]. commit 22f0210eaf65ea262e3e7623bded1040ca017066 Author: Alan Garny Date: Sun Oct 30 15:22:11 2016 +0100 Some minor cleaning up [ci skip]. commit 7df015228d248f1e45bab1d9e6dbb22ea9ed6867 Author: Alan Garny Date: Sat Oct 29 20:41:31 2016 +0200 Some minor cleaning up [ci skip]. commit 4ba21d20f3657f26734abfaeeb9203b6fefa06c5 Author: Alan Garny Date: Sat Oct 29 20:41:19 2016 +0200 Slight improvements to CellmlFileRdfTriple and CellmlFileRdfTriples [ci skip]. commit fdefb9a2e4d7133d3e33a37aa980294d092bf48c Author: Alan Garny Date: Sat Oct 29 20:31:26 2016 +0200 Slight improvements to CellmlFileRdfTriple and CellmlFileRdfTriples [ci skip]. commit 7efc11ca4e7d7f614b19d794a44b7d1a6362d570 Author: Alan Garny Date: Sat Oct 29 20:21:08 2016 +0200 Slight improvements to CellmlFileRuntimeParameter and CellmlFileRuntimeParameters [ci skip]. commit 6d806b0e3d59e7490b91d090fc787f3c37c4e121 Author: Alan Garny Date: Sat Oct 29 20:15:46 2016 +0200 Slight improvements to CellmlFileIssue and CellmlFileIssues [ci skip]. commit f56a47991f0f56869b9fe8672a480a9202aea744 Author: Alan Garny Date: Sat Oct 29 17:43:35 2016 +0200 Slight improvements to Plugin and Plugins [ci skip]. commit fa7eca68782872755072df03109b7f16bc24215a Author: Alan Garny Date: Sat Oct 29 17:42:13 2016 +0200 Windows: import/export PmrExposures (just in case) [ci skip]. commit 062a5a42cb6eab93dbebbd4ec905ffe847a27eb7 Author: Alan Garny Date: Sat Oct 29 17:32:26 2016 +0200 Some minor cleaning up [ci skip]. commit 90def9ebdb67cc7a438e469d0f2de42705918878 Author: Alan Garny Date: Sat Oct 29 17:25:37 2016 +0200 Slight improvements to CellmlAnnotationViewMetadataEditDetailsItem and CellmlAnnotationViewMetadataEditDetailsItems [ci skip]. commit 2528a09bba706393b899b411271f837cf6bbccac Author: Alan Garny Date: Sat Oct 29 16:53:37 2016 +0200 Slight improvements to DataStoreVariable and DataStoreVariable [ci skip]. commit 4be08ef2003dbbee5c6d002071519542534e3af2 Author: Alan Garny Date: Sat Oct 29 13:52:44 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 9179df7fe0166541d9ce21de697b43ff0c5fd3bf Author: Alan Garny Date: Fri Oct 28 18:04:06 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e9c21d7854c62cfc1b2892c2acc8099c39cef217 Author: Alan Garny Date: Fri Oct 28 17:39:17 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 319bc326cca89aa0bd2d4d1896953a766c457c9a Author: Alan Garny Date: Fri Oct 28 16:45:52 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 31154f2f7c027f80f3760cbf8a0a91996e8d829f Author: Alan Garny Date: Fri Oct 28 16:13:48 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2b9fad8bc2c28fecf88a60318a45f7e0974d8366 Author: Alan Garny Date: Fri Oct 28 14:54:36 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit cd8cad32d113c482705a32bef200655b7d23e289 Author: Alan Garny Date: Fri Oct 28 14:47:08 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 82ec8a8e490f533325ccfbf95e8df9625ffa4b15 Author: Alan Garny Date: Fri Oct 28 13:55:03 2016 +0200 Revert "PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141)." This reverts commit f9fc5ca5cd2fed53d59202f25bc2102d6443fee5. commit f9fc5ca5cd2fed53d59202f25bc2102d6443fee5 Author: Alan Garny Date: Fri Oct 28 13:52:45 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e2e8c5d0fd2fe1a005a88f9ec11509ef65f79817 Merge: 0b2397da1 e2efc08bd Author: Alan Garny Date: Fri Oct 28 13:46:00 2016 +0200 Merge branch '\''master'\'' into issue1141. commit e2efc08bd6d5350c753f7c89d88032998c75d28b Author: Alan Garny Date: Fri Oct 28 13:45:08 2016 +0200 Slight update to the developer'\''s documentation [ci skip]. commit 0b2397da1dc3d479964ff6841feaec0733fad807 Author: Alan Garny Date: Fri Oct 28 13:24:26 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 26cf99aaf4b2e9c61650f534b54e873ce169f560 Author: Alan Garny Date: Fri Oct 28 13:22:04 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5ca81154f16cb94485ba9ded7006c958bc732952 Author: Alan Garny Date: Fri Oct 28 13:06:59 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1ad51a908a4cedc46da6856bf9f403c36c8fba3d Author: Alan Garny Date: Fri Oct 28 13:02:33 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a103e43282c5adeab33f53c79322215adc315b04 Merge: a9ffcf541 620514f49 Author: Alan Garny Date: Fri Oct 28 11:24:22 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 620514f49849ae4f654d25651cb4f0a792adbcfa Author: Alan Garny Date: Fri Oct 28 11:18:23 2016 +0200 Data store: made it possible to select a group of data (closes #1143). commit 40a0843b33e38ff82bcf8b08a456f4885d55ef92 Author: Alan Garny Date: Fri Oct 28 10:56:49 2016 +0200 Slight update to the developer'\''s documentation [ci skip]. commit a9ffcf541ed6272b33bb39ce3420087e6d039995 Author: Alan Garny Date: Fri Oct 28 10:37:12 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e33e8be7810b0d6933a85bb1323b21522f8a8510 Author: Alan Garny Date: Fri Oct 28 09:54:36 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 601d4e3bab9584e3768f26d43d505b7d1201ffc4 Author: Alan Garny Date: Thu Oct 27 18:03:34 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3b00d03658c71ac1ad29cf8a8b093afd67f52f45 Author: Alan Garny Date: Thu Oct 27 17:41:52 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit ebf1d1a8390da5edb8eceda5ea4a52cb17b82619 Author: Alan Garny Date: Thu Oct 27 17:28:19 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 90987bad5271bbf9b84d36c0b0f0ecb176a8fe31 Author: Alan Garny Date: Thu Oct 27 17:05:49 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5cb2c44a274a216d5abc1bb7b5ad842275238e70 Author: Alan Garny Date: Thu Oct 27 16:54:06 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 513a79641ce0f7d802468948641089ba07e9469a Author: Alan Garny Date: Thu Oct 27 16:03:27 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 57422239526072c74548cc5cd0cba572330328ce Author: Alan Garny Date: Thu Oct 27 16:01:10 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e3a63a46fd302806a27c306e6a500c9511043379 Author: Alan Garny Date: Thu Oct 27 15:35:46 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 08eb4ed9bacbfd8500ea256c0293cd519a2e9328 Author: Alan Garny Date: Thu Oct 27 15:32:26 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit a7c11716c12e14fa53787d2c0aba69b3968d49ce Author: Alan Garny Date: Thu Oct 27 14:48:14 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 05b55aaf0dca48b5ffb33931d255c1aa0100ef1c Author: Alan Garny Date: Thu Oct 27 13:32:18 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3e41d8521730077102711969b4c853257696a604 Author: Alan Garny Date: Thu Oct 27 13:07:13 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e3efdfcc32f75a1ae6d84700001551f6dc2348ee Author: Alan Garny Date: Thu Oct 27 11:19:15 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c8cb5c089aec08fb202e9cf716ec9196d3d6a4a1 Author: Alan Garny Date: Thu Oct 27 11:00:07 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 8d92d856cf1a10cb22c76a03cb4c611ce91d1532 Merge: 2c5b10637 2556f2728 Author: Alan Garny Date: Thu Oct 27 10:49:24 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 2556f2728be867b2308ed887e84fb37d063fdeb8 Author: Alan Garny Date: Thu Oct 27 10:47:11 2016 +0200 Some minor cleaning up [ci skip]. commit acb898598c5ccb512fa090d8995b89105ebbbcf3 Author: Alan Garny Date: Wed Oct 26 19:40:06 2016 +0200 Some minor cleaning up [ci skip]. commit 2c5b106377f4b9069b3632ad364b52e495821840 Author: Alan Garny Date: Wed Oct 26 18:05:45 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 86f76e8bfe637040e4bb382d03b2a39384019c69 Author: Alan Garny Date: Wed Oct 26 17:52:52 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 9194d6d1e40bf5afb41ffc3899487993fa4c28e8 Author: Alan Garny Date: Wed Oct 26 17:36:05 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 32f2e1b18787f2d4f2a495692a7f5b63dc70d42c Merge: 50bb7008b 49bf2c95b Author: Alan Garny Date: Wed Oct 26 16:50:51 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 49bf2c95b345fa703acf5467176ee8e1fafc5e61 Author: Alan Garny Date: Wed Oct 26 16:50:30 2016 +0200 Some minor cleaning up [ci skip]. commit 50bb7008b2f79c4562062763fc40aa4b64a06857 Merge: 9c1cd18de 513cfeb9c Author: Alan Garny Date: Wed Oct 26 16:42:24 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 513cfeb9cf061d2f14513e70af95769a83068891 Author: Alan Garny Date: Wed Oct 26 16:40:00 2016 +0200 Some minor cleaning up [ci skip]. commit 9c1cd18deb7b57a70a4a36d5044603d6d68fbf59 Merge: 4799ef875 96e180d57 Author: Alan Garny Date: Wed Oct 26 16:30:51 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 96e180d57343ffea913803404b7aa6ff77c1a465 Author: Alan Garny Date: Wed Oct 26 16:30:37 2016 +0200 Some minor cleaning up [ci skip]. commit 4799ef8755293c4db863f9cf13c182d158811f46 Author: Alan Garny Date: Wed Oct 26 14:58:24 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1da15149645c78053cc24d942fa41ba3410de79d Merge: e8801a0e7 886b38d26 Author: Alan Garny Date: Wed Oct 26 11:34:57 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 886b38d26551bb401fa7516f8e924ad40b815a6f Author: Alan Garny Date: Wed Oct 26 11:32:40 2016 +0200 Some minor cleaning up [ci skip]. Replaced things like typedef QList MyTypes; with class MyTypes : public QList { public: void sort(); private: static bool compare(MyType *pType1, MyType *pType2); }; when sorting on such a list is needed. commit e8801a0e7d7a2b369b16dcd895ae1d28d7ae2645 Author: Alan Garny Date: Wed Oct 26 10:28:51 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d8900386b753cb04e6093517b6d7bdcf3cf33169 Merge: fbe3719bf f4c2afe87 Author: Alan Garny Date: Tue Oct 25 16:25:51 2016 +0200 Merge branch '\''master'\'' into issue1141. commit f4c2afe872761d82a1ac5f21f94a89ede233a63b Author: Alan Garny Date: Tue Oct 25 16:25:30 2016 +0200 Web Browser window: added a progress bar and a way to inspect things in a web page [ci skip]. Related to issue #1115. commit fbe3719bfc178c55cbe536be071bdadcfb492397 Merge: 3785ca077 4b7b5cf56 Author: Alan Garny Date: Tue Oct 25 15:39:49 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 4b7b5cf5643c8ebb66a0648317c4148085179352 Author: Alan Garny Date: Tue Oct 25 15:39:19 2016 +0200 Web Browser window: added a progress bar and a way to inspect things in a web page [ci skip]. Related to issue #1115. commit a90ad589a32d48c2191aca00cbfc2730b727314a Author: Alan Garny Date: Tue Oct 25 15:01:08 2016 +0200 Some minor cleaning up [ci skip]. commit 3785ca077007fc608707d4fad2911859487b0dea Author: Alan Garny Date: Tue Oct 25 14:16:17 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit bdb756a784d49d07fd9b2c68093e10d87579939c Author: Alan Garny Date: Tue Oct 25 10:20:50 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6ac2a7f1ec0d755d0bcb75d8c2f09a3d2880691a Merge: 0e4884691 dfe0a1e7c Author: Alan Garny Date: Tue Oct 25 10:08:07 2016 +0200 Merge branch '\''master'\'' into issue1141. commit dfe0a1e7cf5cb7ae6c24dad631b2ec7599f75a2f Author: Alan Garny Date: Tue Oct 25 10:06:34 2016 +0200 Some minor cleaning up [ci skip]. commit 0e4884691165d32c3dc74e430b0567944612bb60 Author: Alan Garny Date: Tue Oct 25 10:02:53 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 86498722236ca0daa37f9a4f7cc866ec13420b13 Author: Alan Garny Date: Tue Oct 25 09:29:49 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 0b4d38e29a2afab0437152375f65770be26c98cc Author: Alan Garny Date: Mon Oct 24 19:11:55 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 065cbff0a9991038c9cfac26739eed6600dba7ec Author: Alan Garny Date: Mon Oct 24 18:51:10 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 41634e154923cef94fc23b17128f0668ccf8a8ec Merge: 015aeb474 273583b99 Author: Alan Garny Date: Mon Oct 24 18:19:53 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 273583b9969b3e92906e1a800da734b4c315330f Author: Alan Garny Date: Mon Oct 24 18:19:20 2016 +0200 Some minor cleaning up [ci skip]. commit 015aeb474bdcdc71034834921c10e5732383fe80 Author: Alan Garny Date: Mon Oct 24 18:12:11 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit ccbbb03ee7d832c456e079bd87d02b97fb95c33f Author: Alan Garny Date: Mon Oct 24 17:50:44 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e6a25619d8805b5752a5628a98234cb79ce1ca57 Author: Alan Garny Date: Mon Oct 24 16:53:15 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4ab67ecc2729310b8f6d5185d92ca1a809dafb1d Author: Alan Garny Date: Mon Oct 24 16:33:34 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d8f03fc686f852052e76ff4c84dce08a1585b8d6 Author: Alan Garny Date: Mon Oct 24 15:56:14 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 702cb7f27ed91624a000de56ac60f306a43b7316 Author: Alan Garny Date: Mon Oct 24 15:49:41 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit dbaa7be9b21979db3eb079d0f80b405a6d87d3e2 Author: Alan Garny Date: Mon Oct 24 15:46:07 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 5dc0247d195adbb03c442e0316fb195114984fc2 Author: Alan Garny Date: Mon Oct 24 15:09:09 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit b1d7950bec9c1cbdf8bc59ae7dae033975a8b06f Author: Alan Garny Date: Mon Oct 24 13:43:22 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 85c5651b8476912572ec54577e6aa33a83ece334 Author: Alan Garny Date: Mon Oct 24 13:37:22 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 8d86a6f7d54fb982ffe7c72028c30f6f301acbc0 Author: Alan Garny Date: Mon Oct 24 13:21:33 2016 +0200 Revert "PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141)." This reverts commit 4065b248df0d7c5fe4beecd11a34b7ce413ad992. commit 4065b248df0d7c5fe4beecd11a34b7ce413ad992 Author: Alan Garny Date: Mon Oct 24 13:12:13 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit ececf4edf14b5752d2c18c5bf38b87d4849d268f Author: Alan Garny Date: Mon Oct 24 11:52:09 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e440ba937b5eebbc3929d4bf6cb6f0bc20b6c72f Author: Alan Garny Date: Mon Oct 24 11:18:58 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4742f41ec1e0ac3fcd971772af9f34a6fc8baab4 Author: Alan Garny Date: Mon Oct 24 10:19:41 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d482245fb08dbcd91161186605b658b01b01570e Author: Alan Garny Date: Mon Oct 24 10:14:06 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e9b9f570dd2eb424248f2231b86c3ffb3a843a4a Author: Alan Garny Date: Sun Oct 23 14:14:10 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 08e0ceb41f2fa140e82ad281f53969fcad6b13b4 Author: Alan Garny Date: Sun Oct 23 14:05:45 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 175e681d118e8276e1c318b78f98c25ca19adbd7 Author: Alan Garny Date: Sun Oct 23 13:13:21 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 4e777497826b318a7a8686c3a3d4d42b68d88255 Author: Alan Garny Date: Sun Oct 23 11:20:33 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 937385e5f33df77ecdf7b396826e0c9de6f1babc Author: Alan Garny Date: Sun Oct 23 10:37:52 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2b8ab93121bc054b455eaa6f1ca4006d52c1d107 Merge: 1863c0c2a 9c6e810de Author: Alan Garny Date: Sun Oct 23 10:28:45 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 9c6e810de7f0c405bf54fb4d1c5c0b72fb7762ee Author: Alan Garny Date: Sun Oct 23 10:28:24 2016 +0200 Fixed a small build regression that prevented us from building OpenCOR on its own (i.e. without any plugins). commit 2dc91e8cdf211316001053011c9b6609bf4b8fe4 Author: Alan Garny Date: Sun Oct 23 10:27:47 2016 +0200 Slight improvement to the way we call our Preferences dialog [ci skip]. We now check whether there are plugins as such (and not only whether some plugins have preferences). commit 8cf34d4ea851d7a2bd6a8fa0ddc713420156382b Author: Alan Garny Date: Sun Oct 23 10:17:15 2016 +0200 Some minor cleaning up [ci skip]. commit 1863c0c2afdf3ae0875023d600521d40a4e0c056 Author: Alan Garny Date: Sun Oct 23 09:48:16 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3c0143220d2ae93739746fab1f1f05f0f209f543 Author: Alan Garny Date: Sat Oct 22 22:06:08 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). Removed the iCCP information from the PNG files (see http://stackoverflow.com/questions/22745076/libpng-warning-iccp-known-incorrect-srgb-profile), thus preventing iCCP-related warning messages from Qt. commit 5b3c37c306400b5cd6e791d59d065c4fbededaa0 Merge: 9a596c7aa d3d885c51 Author: Alan Garny Date: Sat Oct 22 21:46:02 2016 +0200 Merge branch '\''master'\'' into issue1141. commit 9a596c7aa37ccee4888afd2e5e6d7a9efc219e83 Author: Alan Garny Date: Sat Oct 22 21:35:55 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 268582b38fe5145c71e006717e3cd759c28dc459 Author: Alan Garny Date: Sat Oct 22 20:56:40 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 31762dfac9c873358a50f314d9ef2e42173d7ec9 Author: Alan Garny Date: Sat Oct 22 17:46:48 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6ad62174dca8f45511fed7ef0f507d4faf875115 Author: Alan Garny Date: Sat Oct 22 17:38:10 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit c6715e66f0d4d29c99422e6b7bca85f9c1c3acd8 Author: Alan Garny Date: Sat Oct 22 17:28:43 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d3d885c516ae8dd60e1c59629814baad23ad9042 Author: Alan Garny Date: Sat Oct 22 17:15:34 2016 +0200 Some minor cleaning up [ci skip]. commit e81daff7ae3a503464b34a2719ec53e7fc973ce4 Author: Alan Garny Date: Sat Oct 22 17:03:39 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit f228f6c1f1641c6993d42b849676a10ce438ca68 Author: Alan Garny Date: Sat Oct 22 16:42:51 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 3706d36ef1a87a0fab3f2d3c76b8adb63548af56 Author: Alan Garny Date: Sat Oct 22 16:25:45 2016 +0200 PMR Workspaces window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 24055321d2ac81e3dccaf3fbdc282bd3b8b0ba5c Author: Alan Garny Date: Sat Oct 22 13:45:27 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 79ec74d5815c2a27101fc77c4c064955532af047 Author: Alan Garny Date: Sat Oct 22 13:37:34 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2a8abf2ffe509aa5080c5a212cdd15dbbe309b1b Author: Alan Garny Date: Sat Oct 22 13:34:45 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e45c9bcc333ddc5f884e53d18f4f811f0c9cfc8c Author: Alan Garny Date: Sat Oct 22 13:27:54 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 1aae926f453147e506f59a4205a504d3ce7cc598 Author: Alan Garny Date: Sat Oct 22 11:34:18 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 6e3f0c3fd63e82d52575b7c62350982d42ee598a Author: Alan Garny Date: Sat Oct 22 10:48:03 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 2b4d6b848cdb8ff321953d694de9146cc4103b55 Author: Alan Garny Date: Sat Oct 22 09:43:33 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit d5945e9d5d6786be9c11b80398c359e016406a49 Author: Alan Garny Date: Fri Oct 21 15:49:32 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit e6fc9416ba1042d31dc3cd9453ba8c8e25189cd0 Author: Alan Garny Date: Fri Oct 21 15:42:27 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit 8c9d4e6b463e025ed17d6a2cd4a610d30e11d359 Author: Alan Garny Date: Fri Oct 21 15:41:20 2016 +0200 PMR Workspace window: some work on making PR #1124 more in line with the rest of OpenCOR (#1141). commit fb151505be6c503e8067dd525de22e1772186c79 Merge: e38adf5be b3e78b8e0 Author: David Brooks Date: Fri Oct 21 13:48:49 2016 +0200 Merge branch '\''openssl'\'' into pythonplugin commit b3e78b8e0a75fd9d456eec43863e43862b3d19e5 Merge: 6b0b38f3e 5f1f00a2e Author: David Brooks Date: Fri Oct 21 13:45:37 2016 +0200 Merge branch '\''master'\'' into openssl commit 5f1f00a2e4cab46a8be3623fc56ad8fa8592dd05 Merge: 2842944b2 c8a495b0c Author: Alan Garny Date: Fri Oct 21 13:00:59 2016 +0200 Merge pull request #1124 from dbrnz/pmrworkspace. commit e38adf5bed6fd113461e178069982ecbef40a9ba Merge: a1bfbdec4 2842944b2 Author: David Brooks Date: Fri Oct 21 12:54:39 2016 +0200 Merge branch '\''master'\'' into pythonplugin commit c8a495b0cfcf7d56a5e211e966e979c40e229376 Author: David Brooks Date: Fri Oct 21 12:23:01 2016 +0200 Fix a typo in commit 128c191 (#969). commit 19df6d8dfe0eb0ff6c628d445e5e6114adc0b990 Author: David Brooks Date: Fri Oct 21 12:21:34 2016 +0200 Rename `PmrRepository` back to `PmrWebService` (#969). commit 128c1914890073bf446d722b18c4fd21e90c54fe Author: David Brooks Date: Fri Oct 21 11:54:37 2016 +0200 Tidy up git error reporting code (#969). commit ddc7d3585bbea7fc8ada61af6ead67354be6a6af Merge: b1b359db5 8412f7343 Author: David Brooks Date: Fri Oct 21 11:53:18 2016 +0200 Merge branch '\''pmrworkspace'\'' of github.com:dbrnz/opencor into pmrworkspace commit b1b359db5d33bcfe81af3f82d7a6af4904690ec7 Merge: 7484100c4 2842944b2 Author: David Brooks Date: Fri Oct 21 11:47:42 2016 +0200 Merge branch '\''master'\'' into pmrworkspace commit 2842944b25b180796596122d2a27571550b10eda Author: Alan Garny Date: Thu Oct 20 14:57:29 2016 +0200 Travis CI: upgraded to Stephan Binner'\''s Qt 5.6.2 PPA. commit 29e19df88e5c560fb5aebdc4736ab97b40fffcac Author: Alan Garny Date: Thu Oct 20 13:11:50 2016 +0200 Some minor cleaning up [ci skip]. commit 8f011ff4a94b1d0665cc2bb201ec0232ee7d14c0 Author: Alan Garny Date: Thu Oct 20 10:40:46 2016 +0200 make sure that we, once again, generate snapshots [ci skip]. commit b7d27932273c59eefd09981a6fa157ca2e6c9e82 Merge: c569c9b39 0791b21e4 Author: Alan Garny Date: Thu Oct 20 10:29:59 2016 +0200 Issue1137 macOS: got rid of some macOS specific menu items (closes #1137). commit 0791b21e48410661b112e485649e2460f505947c Author: Alan Garny Date: Thu Oct 20 10:09:30 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). In case we want to build OpenCOR on earlier versions of macOS (i.e. before 10.12 / Sierra), as is the case on Travis CI. commit cce1808fe8b206922e1680fdf17972a61434d973 Author: Alan Garny Date: Thu Oct 20 09:47:13 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). commit 645155c0841331fa07b31cf4cf45eac53df4d2c2 Author: Alan Garny Date: Thu Oct 20 09:44:12 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). commit 3737c3f0d8bae07dc08e67c2066a451d06c45d0b Author: Alan Garny Date: Thu Oct 20 09:36:25 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). commit 76b4c2b8aae29b29627c3d2439921bf19696c8da Author: Alan Garny Date: Thu Oct 20 09:30:55 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). commit 4c7e901d1c3272ac441924f8b7984afa69905c43 Author: Alan Garny Date: Thu Oct 20 09:22:22 2016 +0200 macOS: some work on getting rid of some macOS specific menu items (#1137). commit c569c9b39e2932f608d58355f600fefc5964ae79 Author: Alan Garny Date: Wed Oct 19 15:03:26 2016 +0200 Slight updates to our downloads and what'\''s new pages [ci skip]. commit 626754a3939baf20dc9d858808b7c376bc4f20f4 Author: Alan Garny Date: Wed Oct 19 15:02:10 2016 +0200 Slight updates to our downloads and what'\''s new pages [ci skip]. commit 61adb1b26106fa4b7b28bae8e176f19e9f41000f Merge: c104f6cab a442e893f Author: Alan Garny Date: Wed Oct 19 14:47:20 2016 +0200 Now have a preferences window so the user can specify his preferences for OpenCOR and its plugins (closes #193). commit a442e893f3f79115ebf2c18042dd09a8a0adc960 Merge: 99db527a0 c104f6cab Author: Alan Garny Date: Wed Oct 19 14:10:03 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 99db527a09c59f4604113adb78d21f048b519915 Author: Alan Garny Date: Wed Oct 19 13:47:08 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit c104f6cab254de1342d30e8588ac83f1ec51b103 Author: Alan Garny Date: Wed Oct 19 13:46:38 2016 +0200 Some minor cleaning up [ci skip]. commit 7f030fad72520b68f2b5536ddd07af23ccd4d99a Author: Alan Garny Date: Wed Oct 19 11:49:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit e457f85017f55ce11964380369052d6fc84380a7 Author: Alan Garny Date: Wed Oct 19 11:21:12 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 7fd8ececa0f5bfc908fe1bf3dfb4f1b7414d31a1 Merge: 0affc02bf 4143a1c27 Author: Alan Garny Date: Wed Oct 19 11:06:50 2016 +0200 Merge branch '\''master'\'' into issue193 [ci skip]. commit 4143a1c275086d092b72d7b8b5a385122a8753bc Author: Alan Garny Date: Wed Oct 19 11:06:39 2016 +0200 Some minor cleaning up [ci skip]. commit 0affc02bf5cd72dc47b5eb333c3c0d54af7147e8 Author: Alan Garny Date: Tue Oct 18 18:00:25 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 309931cc276062483bbc5e35df5c082de585b928 Author: Alan Garny Date: Tue Oct 18 17:19:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 711cbb0d9896883464cb3e624e4c11e3130ef980 Merge: aa590d0e4 078db5b91 Author: Alan Garny Date: Tue Oct 18 17:09:17 2016 +0200 Merge branch '\''master'\'' into issue193. commit 078db5b91a1d7ab67c2d26836c14bb853d461f3c Author: Alan Garny Date: Tue Oct 18 16:04:09 2016 +0200 Slight update to our developer documentation [ci skip]. commit 60cc2f2d935a78972b0f187cc1711038f180b2e8 Author: Alan Garny Date: Tue Oct 18 16:01:21 2016 +0200 General: improved the translation of Qt-related messages (closes #1135). commit e34f401d16e5f6fdb18994906ca914f9f0615267 Author: Alan Garny Date: Tue Oct 18 15:06:08 2016 +0200 Qt: removed the qgenericbearer plugin, which we don'\''t need, on Windows/Linux/macOS and QtDBus on macOS, which we don'\''t need either. commit aa590d0e43eb4ab3e67542b2f608666cfb1dee49 Author: Alan Garny Date: Tue Oct 18 11:39:14 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 6cc7775b8545b7222795c56028079f3d3c4244a1 Merge: c3adb157e 1db268de3 Author: Alan Garny Date: Tue Oct 18 10:57:17 2016 +0200 Merge branch '\''master'\'' into issue193. commit 1db268de3b4b14f3b73e19fc2aa50ea12c90f11d Author: Alan Garny Date: Tue Oct 18 10:31:24 2016 +0200 Web Browser window: some minor cleaning up. commit b954f6415cb714e442f9c91e1bc87a518c45b2b5 Author: Alan Garny Date: Tue Oct 18 10:26:01 2016 +0200 Web Browser window: some minor cleaning up. commit c3adb157ebc855e387e5a8593a2c1f656b22489d Merge: db3e4675f 179343e06 Author: Alan Garny Date: Mon Oct 17 19:42:24 2016 +0200 Merge branch '\''master'\'' into issue193. commit 179343e06f5f7178bf2ca0050c302f6ecb51fda1 Author: Alan Garny Date: Mon Oct 17 19:41:25 2016 +0200 Slight updates to our downloads and what'\''s new pages [ci skip]. commit 6eb84369ed59546ddd665b4308aaf10cebc55d89 Author: Alan Garny Date: Mon Oct 17 19:32:38 2016 +0200 macOS: prevent an ApplePersistenceIgnoreState message from being shown (closes #1134). commit 8b8730eaf3cc1612d8eac3378e457672e166f6d5 Merge: 42ead2b91 896c6da35 Author: Alan Garny Date: Mon Oct 17 19:24:04 2016 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor [ci skip]. commit 42ead2b914bb0f41a699ada35bcfbed187f554bf Author: Alan Garny Date: Mon Oct 17 19:23:24 2016 +0200 Slight updates to our downloads page [ci skip]. This is following our work on issue #1115. commit 896c6da35e58bf305eae9b6de3a5781ff67a628d Merge: 23637c769 df535ad0b Author: Alan Garny Date: Mon Oct 17 19:14:12 2016 +0200 Add a Web browser like window (closes #1115). commit df535ad0b0096e93b1e6bb2d4ef59e9cba2b10e6 Author: Alan Garny Date: Mon Oct 17 17:27:09 2016 +0200 Some work on adding a Web browser like window (#1115). commit 3450f39438db622e84723eecb2b6bfd1a902cbb3 Author: Alan Garny Date: Mon Oct 17 17:22:28 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit 98747e016297adb57f7c0123c918fbfd55111a99 Author: Alan Garny Date: Mon Oct 17 17:20:27 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit d01c235f3e1a2e93a4950858d0162f437c03e2a6 Author: Alan Garny Date: Mon Oct 17 16:16:43 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit 37dcc448301467727f2b53eeb32feb6cf0ce153e Author: Alan Garny Date: Mon Oct 17 16:12:57 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit 6aacb7bcaab5bf387edf2d0011afc7667a97195a Author: Alan Garny Date: Mon Oct 17 16:11:54 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit f4c1a483650421575a9f4a453f2b0c0af399c8e3 Author: Alan Garny Date: Mon Oct 17 15:58:03 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit c41185ab9f0ead432e4b375dd61dc3caaac7740d Author: Alan Garny Date: Mon Oct 17 11:00:16 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit 4b8dafff65bd57500d8811d296bb4261e36ec18f Author: Alan Garny Date: Mon Oct 17 10:35:20 2016 +0200 Some work on adding a Web browser like window (#1115) [ci skip]. commit 3732feb4152f883ac399099f63b74a5f524ca28e Merge: c1e873293 23637c769 Author: Alan Garny Date: Sat Oct 15 22:25:49 2016 +0200 Merge branch '\''master'\'' into issue1115. commit db3e4675f065bf87dea0957c7fcbb4031c4dfc2b Merge: 70d8ecd22 23637c769 Author: Alan Garny Date: Sat Oct 15 22:24:35 2016 +0200 Merge branch '\''master'\'' into issue193. commit 23637c7690de7464890e78609eb22338c5a4b826 Author: Alan Garny Date: Sat Oct 15 21:32:56 2016 +0200 Version 0.5. commit 267dc9ea4355c454bcb5bf802a8caadfb02d99f9 Author: Alan Garny Date: Sat Oct 15 21:28:59 2016 +0200 PMR window: bypass certification check and make sure that our busy widget gets updated during cloning [ci skip]. Regarding the certificate check, we indeed came across a message (on OS X 10.8 through 10.11) about the SSL certificate (for PMR) being invalid. We ‘trust’ PMR, so we can bypass the certificate check. commit d5a08144064506b87c9d91ff73c9129a982a15d5 Author: Alan Garny Date: Sat Oct 15 20:17:41 2016 +0200 Some minor cleaning up [ci skip]. commit f80a65130f2ffc573294ea542f804efca917a11d Author: Alan Garny Date: Sat Oct 15 20:17:07 2016 +0200 Revert "Version 0.5." This reverts commit 77b4fbc7f0b16ff4884ba2eed9e371d491c0a995. commit c1e8732930e76b11159c6742683d3c52b0a3f745 Merge: 0118a494f 77b4fbc7f Author: Alan Garny Date: Sat Oct 15 13:23:05 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 70d8ecd22bf0823434ee7dcb3f14dcc1ea7bb656 Merge: ed6a6775c 77b4fbc7f Author: Alan Garny Date: Sat Oct 15 13:22:24 2016 +0200 Merge branch '\''master'\'' into issue193. commit 77b4fbc7f0b16ff4884ba2eed9e371d491c0a995 Author: Alan Garny Date: Sat Oct 15 13:21:42 2016 +0200 Version 0.5. commit 9566269d02d0e0c8234406c6189061c9b2787862 Author: Alan Garny Date: Sat Oct 15 12:44:35 2016 +0200 PMR window: fixed a small problem when trying to directly clone a workspace [ci skip]. Indeed, the name of the directory where the cloning is to take place wasn’t passed, which means that it was failing. Note that this didn’t happen if we were first showing exposure files and then trying to clone a workspace since the cloning would have been done through a different route (PmrWindowWindow::cloneWorkspace() rather than PmrWebService::finished() with WorkspaceInformation as a request). commit 3e551ce1638790df844d6e576577265ad182f920 Author: Alan Garny Date: Sat Oct 15 12:37:32 2016 +0200 Some minor cleaning up [ci skip]. commit 0118a494f056a4c70dca2c00974ce5ef6a3054b8 Merge: 3bfcde8ff e384416b0 Author: Alan Garny Date: Fri Oct 14 21:45:04 2016 +0200 Merge branch '\''master'\'' into issue1115. commit ed6a6775cba53f192758bb79cfa3b12d4f5d12f3 Merge: 50e78a5bb e384416b0 Author: Alan Garny Date: Fri Oct 14 21:44:12 2016 +0200 Merge branch '\''master'\'' into issue193. commit e384416b069bfbd4106d3e2ba6920e4fc553eb63 Author: Alan Garny Date: Fri Oct 14 21:41:07 2016 +0200 Some minor cleaning up. commit 3bfcde8ff773b2a3c59b5044eab9c98632e399cd Merge: 50f67ec06 0dd7169e0 Author: Alan Garny Date: Fri Oct 14 17:49:05 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 50e78a5bbee96a23c0418b15852f3b2140379003 Merge: 05042726b 0dd7169e0 Author: Alan Garny Date: Fri Oct 14 17:47:28 2016 +0200 Merge branch '\''master'\'' into issue193. commit 0dd7169e0f50734ead1048a766c45be9e882e1bf Author: Alan Garny Date: Fri Oct 14 17:16:07 2016 +0200 Some minor cleaning up [ci skip]. commit 2b2734897715f0af55eac3e84afcf41117f9b291 Author: Alan Garny Date: Fri Oct 14 15:22:14 2016 +0200 Some minor cleaning up [ci skip]. commit 6244e50b24e00e76eb03f4618a4e410dd244370c Author: Alan Garny Date: Fri Oct 14 13:55:25 2016 +0200 PropertyEditor widget: always create a value field even for a section item. Starting with commit 467830c52f3db2ef473d6f5a47e1c4969c1ab989, we thought it was a waste of memory to create a value field for a section item and, in some way, it is, but the fact is that it makes things more difficult when it comes to selecting a property or a section item. Indeed, when selecting a property, the property value gets correctly selected, but then if you select a section item, it will reset the position of horizontal scrollbar, if present (even if you try to preserve its position after selecting the section item). commit 2359e24d55c6e12e45f9fe79e327f5d9272ef854 Author: Alan Garny Date: Fri Oct 14 13:46:17 2016 +0200 PropertyEditor widget: try to preserve the position of the horizontal scrollbar when selecting a property or section item [ci skip]. commit e21b2781b473f8c6c3eee11f3951c8500f67f878 Author: Alan Garny Date: Fri Oct 14 13:22:20 2016 +0200 PropertyEditor widget: improved the selection of a property, as well as made sure that a value field exists before returning its value as an integer, double, etc. [ci skip]. commit 797953163dde3d5a1b6146be4321d446bd3eb6d1 Author: Alan Garny Date: Fri Oct 14 13:00:42 2016 +0200 Greatly improved our adjustWidgetSize() method. commit 6d978f2db8608a59d6fc9be812050fccd7d7438a Merge: fca7f1b77 5f8a4fe53 Author: Alan Garny Date: Thu Oct 13 23:02:23 2016 +0200 OpenSSL: now shipping OpenSSL libraries on macOS (closes #1132). commit 5f8a4fe538306a8f311dc942b8219b17d83cf066 Author: Alan Garny Date: Thu Oct 13 20:03:38 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries (#1132). commit e42974daf65ffa440704126b1afde7cb5d705cdc Author: Alan Garny Date: Thu Oct 13 19:24:46 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries (#1132). commit 2bc2711deade2f484e140370fb607b8caa05ec1e Author: Alan Garny Date: Thu Oct 13 18:54:09 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries (#1132). commit fca7f1b7727a32609dfbd058fd37e24949e72f78 Author: Alan Garny Date: Thu Oct 13 17:15:30 2016 +0200 QScintilla: rebuilt its binaries. commit 227341aed695b83c4d2f473c802e45980d59d4c4 Author: Alan Garny Date: Thu Oct 13 17:05:41 2016 +0200 QScintilla: some work on rebuilding its binaries [ci skip]. commit 70f3944e36b8b95b3ad92106aeae2f511b3f0e90 Author: Alan Garny Date: Thu Oct 13 16:30:11 2016 +0200 QScintilla: fix Xcode 8 compilation problem. Another solution has been given on the QScintilla mailing list (see https://www.riverbankcomputing.com/pipermail/qscintilla/2016-October/001 160.html), referencing https://github.com/sqlitebrowser/sqlitebrowser/commit/969e263e5bf71e63df 8ee908cb4a2014b9a55c9b, but it’s not working for us. Indeed, although it does allow QScintilla to be compiled using Xcode 8, if you open more than one file using a QScintilla-based editor that should have the same lexer, then the lexer of the first file will be '\''wrong'\''. In our case, the line height of the first editor is slightly bigger than that of the two other editors, which is clearly wrong. Using this fix, everything is fine. commit b1a5849993d71d8309741ffb562954b22ce45f05 Author: Alan Garny Date: Thu Oct 13 15:46:28 2016 +0200 Reverting commit 8bca5dd78d64b1133b69d109434ee688413ee5c5 [ci skip]. Indeed, although it does allow QScintilla to be compiled using Xcode 8, if you open more than one file using the `CellML Text` view, then the lexer of the file will be different from the others on Linux and macOS (at least, using our current lexer settings for the `CellML Text` view). Indeed, the height of a line is a slightly bigger for the first editor, which means that when you switch to another file, you can see that a slight ‘shift up’ in the text. commit 1ab5194d2d8173cfcc48d993594b8c576610fd85 Author: Alan Garny Date: Thu Oct 13 15:41:09 2016 +0200 Some minor cleaning up. Related to issue #1121. commit 2c65c77bd4a005a0e7ea2efc21cccbc7a21d866d Author: Alan Garny Date: Thu Oct 13 14:49:02 2016 +0200 Slight improvement to our downloads page [ci skip]. commit 37dce4ef2a5179f59a64b2acad5d5fa29680e918 Merge: 1ea1c53e0 a286ab0ae Author: Alan Garny Date: Thu Oct 13 14:47:51 2016 +0200 Travis CI. commit a286ab0aedd46e48dca65dd0f5a00fc88a37aad9 Merge: bdbdb473b 1ea1c53e0 Author: Alan Garny Date: Thu Oct 13 13:05:29 2016 +0200 Merge branch '\''master'\'' into travis-ci. commit 1ea1c53e0ab068d4cbb30b1831e3684c2aa219a1 Merge: 88a78404d 7a7169c67 Author: Alan Garny Date: Thu Oct 13 13:04:17 2016 +0200 Qt: upgraded to version 5.6.2 (closes #1127). This also closes #1035 as a result. commit 7a7169c67c2361a55c538882b39299e9ddc6ca0a Author: Alan Garny Date: Thu Oct 13 11:56:23 2016 +0200 Qt: some work on upgrading to version 5.6.2 (#1127). commit bdbdb473bd5bf27cd241d5ad2101c39bc1fee1cb Author: Alan Garny Date: Thu Oct 13 11:19:19 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. Well, the issue is most related to the way the PPA version of Qt was built, so we still need to build QScintilla… commit facc8304b64463251429f60ae8f98e4edb822ea0 Author: Alan Garny Date: Thu Oct 13 10:42:15 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit ba2b228961f586e90b85b1130fd3f76fdb7cf04a Author: Alan Garny Date: Thu Oct 13 10:39:53 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit 6b9fd024d7ec5158cdf06b432b18068efe0d44f5 Author: Alan Garny Date: Thu Oct 13 10:04:52 2016 +0200 Qt: some work on upgrading to version 5.6.2 (#1127). commit a08bc695d579ee5146e5f557c87f9435f867ed80 Author: Alan Garny Date: Thu Oct 13 09:31:15 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit 54f03ad365859ec8403051c46db9ab2e0b96962c Merge: 0de1e15a4 88a78404d Author: Alan Garny Date: Thu Oct 13 09:28:37 2016 +0200 Merge branch '\''master'\'' into issue1127. commit 88a78404dd7ebbff708a6893d2a0ec2c218fd6d0 Author: Alan Garny Date: Thu Oct 13 09:26:01 2016 +0200 Improved the deployment of some Qt libraries on Linux. commit 0de1e15a478c7832f401fa29726b93f6ce9a9fb9 Merge: f9122ec6d 97449c8fb Author: Alan Garny Date: Thu Oct 13 09:06:17 2016 +0200 Merge branch '\''master'\'' into issue1127. commit 97449c8fbbc0e1acb6b20f48216ebca97c6fafe6 Merge: bf853322e dfecc0237 Author: Alan Garny Date: Wed Oct 12 20:57:04 2016 +0200 QtWebKit: upgraded to version 5.6.2 (closes #1126). commit 8412f7343c4b8ea4029253c1cea850f0e9afb1a8 Author: David Brooks Date: Wed Oct 12 20:43:12 2016 +0200 We can’t use `git:` prefix to access sub-modules (#969). commit dfecc0237dce94a7e33cc1dc9249a2fa58be7928 Author: Alan Garny Date: Wed Oct 12 20:30:29 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). commit 7c271c534a685a81d33a40520e7c964bfa1e07e0 Author: Alan Garny Date: Wed Oct 12 19:56:28 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). Done with the Windows side of things. commit f1ab088a4fc9bf285be88a3bed1cc8225a077237 Author: Alan Garny Date: Wed Oct 12 17:12:35 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). commit 388a9fed1b038112ee61d644f606268c7102575f Author: Alan Garny Date: Wed Oct 12 17:09:47 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). Done with the Linux side of things. commit f9122ec6d13b26fd1de476993c9ebd91295c691e Author: Alan Garny Date: Wed Oct 12 16:24:55 2016 +0200 Qt: some work on upgrading to version 5.6.2 (#1127). commit 96b455cd441798510c566e795936b3fa907a9410 Author: Alan Garny Date: Wed Oct 12 16:20:03 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). Done with the macOS side of things. commit e929a57db3daeeb580ded380d8d26128d94b0087 Merge: 9d91c4c2d bf853322e Author: Alan Garny Date: Wed Oct 12 16:04:51 2016 +0200 Merge branch '\''master'\'' into issue1126. commit bf853322eabd825406118df4e5f5ae5b63a4018f Author: Alan Garny Date: Wed Oct 12 16:04:14 2016 +0200 Some minor cleaning up [ci skip]. commit 9d91c4c2d03087fd2de3f86a4b80a1724f9de88f Author: Alan Garny Date: Wed Oct 12 13:50:33 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 (#1126). commit 28a31e4e27f7cc8051a7d0b3a2eb15a6e476a9a9 Author: Alan Garny Date: Wed Oct 12 13:49:34 2016 +0200 Some minor cleaning up [ci skip]. commit e197236dbfec2077123e0c55bb9ad7070e603493 Author: Alan Garny Date: Wed Oct 12 13:25:45 2016 +0200 Some minor cleaning up [ci skip]. commit 4994bdba3162c6d7439df87a951d108895fe61b7 Author: Alan Garny Date: Wed Oct 12 13:23:58 2016 +0200 Some minor cleaning up [ci skip]. commit 70e0cfa4ea12cd6731724c078f360f31871d3b6d Author: Alan Garny Date: Wed Oct 12 13:10:32 2016 +0200 Qt: some work on upgrading to version 5.6.2 (#1127). commit aa07cdb829d94aa53987b09178fd99c9838fea6c Author: Alan Garny Date: Wed Oct 12 13:02:47 2016 +0200 Qt: some work on upgrading to version 5.6.2 (#1127). commit dd539d80ec37b9cd87c019a98eb7fae1c6fdebb9 Merge: 4b85bfb8b 461a61860 Author: Alan Garny Date: Wed Oct 12 11:49:13 2016 +0200 libgit2: upgraded to version 0.24.2 (closes #1125). commit 461a618602f07af62bedfbbabb19a993b7a64275 Author: Alan Garny Date: Wed Oct 12 10:54:18 2016 +0200 libgit2: some work on upgrading to version 0.24.2 (#1125). Note: we are not generating new binaries just yet since we will anyway have to do that as part of issue #1127. commit 50f67ec06faebb2de3f52400496b7217267eff97 Merge: 4fae13821 4b85bfb8b Author: Alan Garny Date: Wed Oct 12 10:18:53 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 05042726b1ae4796232ad0775949d4c364491371 Merge: 8314a8bf9 4b85bfb8b Author: Alan Garny Date: Wed Oct 12 10:18:07 2016 +0200 Merge branch '\''master'\'' into issue193. commit 4b85bfb8b0d213776d617e64d74482e4e79a8af0 Author: Alan Garny Date: Mon Oct 10 16:38:27 2016 +0200 Some minor cleaning up [ci skip]. commit 99ff5a4440059868d7859167c9146c62f38d52b3 Author: Alan Garny Date: Mon Oct 10 16:30:48 2016 +0200 Some minor cleaning up [ci skip]. commit 299896aa7004d0adde6a1ffd1ed7375a5d5de79b Author: Alan Garny Date: Mon Oct 10 14:40:14 2016 +0200 Slight update to the developer documentation [ci skip]. commit 8bca5dd78d64b1133b69d109434ee688413ee5c5 Author: Alan Garny Date: Mon Oct 10 14:38:25 2016 +0200 QScintilla: slight fix so that it can be built using Xcode 8. QScintilla cannot be built using Xcode 8, but someone found a fix (see https://github.com/sqlitebrowser/sqlitebrowser/commit/969e263e5bf71e63df 8ee908cb4a2014b9a55c9b) that we can use until QScintilla officially addresses that problem. commit 7484100c4bd5aedf4380bf49a3c8f600ba272db1 Author: David Brooks Date: Mon Oct 10 12:46:23 2016 +0200 Tidy up messages (#969). commit a51288fe1ede2f79ad56c877e7afc1d89a4e1b9e Author: David Brooks Date: Mon Oct 10 12:45:13 2016 +0200 Tidy up code (#969). commit 1f5fb6966836900735d25c330bea95ece307202d Author: David Brooks Date: Mon Oct 10 12:41:21 2016 +0200 Some work on handling merge conflicts (#1058). commit cd61bf8e41759ed408485466b5872a675ded7b49 Author: Alan Garny Date: Mon Oct 10 11:19:50 2016 +0200 Some minor cleaning up. commit e7275111a9d2424775d54b36a68330afa1d069e7 Merge: f54a8007e f8e8ffc3f Author: David Brooks Date: Fri Oct 7 14:02:33 2016 +0200 Merge branch '\''master'\'' into pmrworkspace commit 4fae13821eafb46cfef4a648151e2ff0b059190f Merge: 24a3ee9e4 f8e8ffc3f Author: Alan Garny Date: Thu Oct 6 18:58:08 2016 +0200 Merge branch '\''master'\'' into issue1115 [ci skip]. commit 8314a8bf9c167c0ecd1e3688dbecadaf088b24dd Merge: c32e60cad f8e8ffc3f Author: Alan Garny Date: Thu Oct 6 18:57:23 2016 +0200 Merge branch '\''master'\'' into issue193 [ci skip]. commit f8e8ffc3f72a769afeb64ef3452758e18c41f1e8 Author: Alan Garny Date: Thu Oct 6 18:53:43 2016 +0200 Re-enabled BioSignalML-based plugins now that the macOS BioSignalML binary files have been moved to their '\''new'\'' directory. commit c32e60cad610eac2d4e6efcb8fedacc321851e95 Author: Alan Garny Date: Thu Oct 6 18:51:51 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 24a3ee9e4527644d63e63b123a280ea3d322c358 Merge: 2eb08fe2b 781742f02 Author: Alan Garny Date: Thu Oct 6 16:34:41 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 3b1e273b78fc4ad472f643ded646e0e5784e1fdb Merge: 64993fe9d 781742f02 Author: Alan Garny Date: Thu Oct 6 16:33:57 2016 +0200 Merge branch '\''master'\'' into issue193. commit 781742f02761a52acfb3dea080a2919feb6b22fb Author: Alan Garny Date: Thu Oct 6 16:31:48 2016 +0200 Some minor cleaning up. commit fc501446c2e9e57af48f2b02b9d67bd62b940a5d Author: Alan Garny Date: Thu Oct 6 16:20:57 2016 +0200 Some minor cleaning up of arg() constructs. commit 3e356283919ae200bff8e8fc2c31df00f970e7f6 Author: Alan Garny Date: Thu Oct 6 13:28:17 2016 +0200 Related to commit c9649a8 and therefore commit fdc94b9 [ci skip]. commit c9649a863e391ec741f9f6ceff41b21bd12f2a55 Author: Alan Garny Date: Thu Oct 6 11:54:07 2016 +0200 Fixed a problem that got introduced in commit fdc94b9 [ci skip]. Indeed, for version 0.4.1, we would end up with versionVersion being equal to “ 0.%2.%2”! commit 66fc03df50c5095188c98a60c9f73fd328a04852 Author: Alan Garny Date: Thu Oct 6 11:39:37 2016 +0200 CheckForUpdatesDialog: some refactoring. commit 03d87068be0cdc227656801f3c9f94e265e2db98 Author: Alan Garny Date: Thu Oct 6 11:38:32 2016 +0200 Some minor cleaning up [ci skip]. commit 2eb08fe2bf22f56c2864e5a41ec3c03d327040fa Merge: 31daebadc d0440dbdc Author: Alan Garny Date: Thu Oct 6 10:59:17 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 64993fe9da517d0dcbb6f741043437ee2f15960a Merge: b9cea0cc5 d0440dbdc Author: Alan Garny Date: Thu Oct 6 10:58:43 2016 +0200 Merge branch '\''master'\'' into issue193. commit d0440dbdc7e06a57d94ba086dde5b569759b0e62 Author: Alan Garny Date: Thu Oct 6 10:56:15 2016 +0200 CheckForUpdatesDialog: some refactoring. commit e34e9a81a93464e662a6b7a1a0a2293ca738dbe4 Author: Alan Garny Date: Thu Oct 6 10:25:08 2016 +0200 Plugins dialog: some refactoring. commit b9cea0cc54c4d8c7717984e5280b256cee033e0f Author: Alan Garny Date: Thu Oct 6 09:55:05 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 72f04ceca7f0c0bea76780ec936de0bdd14ada61 Author: Alan Garny Date: Thu Oct 6 09:51:57 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 97fa961822d8781545bf431e458e4c4ba18d581b Author: Alan Garny Date: Wed Oct 5 18:08:03 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 31daebadc4c1065d61e3acab7e9f3a7d81ee2d45 Merge: 532714a8c ced8a1481 Author: Alan Garny Date: Wed Oct 5 18:03:58 2016 +0200 Merge branch '\''master'\'' into issue1115 [ci skip]. commit ced8a14814e13cc2bc1043eb5ec4f76ad95d56a7 Author: Alan Garny Date: Wed Oct 5 18:01:08 2016 +0200 Some minor cleaning up [ci skip]. commit 864edb1559b268a6425012182d8e63c1b41f652a Author: Alan Garny Date: Wed Oct 5 18:00:46 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 532714a8ced7d9b23b7a18fda13b0db460c4812b Merge: 67ce113c8 22d8834b4 Author: Alan Garny Date: Wed Oct 5 17:44:15 2016 +0200 Merge branch '\''master'\'' into issue1115 [ci skip]. commit 899a4047544cb071b11deb1d48cb773a7ee8f853 Merge: b75d6a79b 22d8834b4 Author: Alan Garny Date: Wed Oct 5 17:42:40 2016 +0200 Merge branch '\''master'\'' into issue193 [ci skip]. commit 22d8834b41f8bae4806d230538575c7ae27310f5 Author: Alan Garny Date: Wed Oct 5 17:41:51 2016 +0200 Some minor cleaning up [ci skip]. commit 67ce113c8cb7b3fc87b0d2c476b013e80a76777d Merge: f60bb9397 252f0eac6 Author: Alan Garny Date: Wed Oct 5 17:30:31 2016 +0200 Merge branch '\''master'\'' into issue1115. commit b75d6a79b4a3305def62fbc9e2b7501c783751c7 Merge: da0a4893f 252f0eac6 Author: Alan Garny Date: Wed Oct 5 17:29:29 2016 +0200 Merge branch '\''master'\'' into issue193. commit 252f0eac610e2d49c740448d0c15b851209bf923 Author: Alan Garny Date: Wed Oct 5 17:16:19 2016 +0200 General: use "macOS" (#1121). Oops, had forgotten to update some comments and a few other ‘minor’ things here and there… commit 5db0604e262b8900699ca6a3240cedaefa48bd3c Author: Alan Garny Date: Wed Oct 5 16:47:00 2016 +0200 Added adjustWidgetSize() to adjust the size of a given widget, if needed [ci skip]. commit 9eace5d72d17380fa713c9f1b5ce676b9db97af0 Author: Alan Garny Date: Wed Oct 5 16:30:39 2016 +0200 Some minor cleaning up [ci skip]. commit 503b74254366d132ba18f8b54df5486c0a4b1c2d Author: Alan Garny Date: Wed Oct 5 16:20:46 2016 +0200 Removed the Preferences window [ci skip]. Note: it is currently being worked on (see issue #193). commit 2ded8d08d6123b2fcab934d55c36bec4329431f3 Author: Alan Garny Date: Wed Oct 5 16:18:50 2016 +0200 Oxygen library: upgraded to version 5.26.0 [ci skip]. commit da0a4893ff3c3d808b18e4253fe38ac9dbe1516c Author: Alan Garny Date: Wed Oct 5 15:34:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 8d51d6dc234162d3f064bb80acd68a5ef1cab545 Author: Alan Garny Date: Wed Oct 5 15:11:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 7ae8f07f8159a89469619e92763380105cad7b5c Author: Alan Garny Date: Wed Oct 5 15:09:50 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 5d39f6eb8c73dca8c6b5cbe7a268027e6ca0a4f9 Author: Alan Garny Date: Wed Oct 5 14:22:48 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit f60bb939752f69c11e3e784b49706aa4438412da Merge: 375e9f88c 8deff130c Author: Alan Garny Date: Wed Oct 5 09:01:02 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 4bd0e60b38942a3b7ebc4a8b72deb1e5da5b03b5 Merge: 1a72330dc 8deff130c Author: Alan Garny Date: Wed Oct 5 09:00:23 2016 +0200 Merge branch '\''master'\'' into issue193. commit 8deff130c13e24f0436d751bd670e4785770578c Author: Alan Garny Date: Wed Oct 5 08:56:14 2016 +0200 Some minor cleaning up [ci skip]. commit a344c14510458462506e4d7f8871503754129953 Merge: 9a63d8284 2f89f4465 Author: Alan Garny Date: Tue Oct 4 20:36:44 2016 +0200 General: now use "macOS" (closes #1121). commit 2f89f4465ef3f6b62ecf12d7086d68f08ae52b33 Author: Alan Garny Date: Tue Oct 4 19:33:54 2016 +0200 Travis CI: re-enabling Linux and debug builds. commit 1914953c2bee00060bcf9261aeb03aed5d81b647 Author: Alan Garny Date: Tue Oct 4 19:10:31 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to export OPENSSL_ROOT_DIR. commit 69265595d9e20fce379ee400a4271882cba640a1 Author: Alan Garny Date: Tue Oct 4 18:44:10 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to set OPENSSL_ROOT_DIR. commit 5a783b24299931d02bb3e5a581c7f855ae011e4e Author: Alan Garny Date: Tue Oct 4 18:19:22 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to install OpenSSL and set OPENSSL_ROOT_DIR. commit ac8df1b5272a816978d86494a56fa7e9ed2b4ddb Author: Alan Garny Date: Tue Oct 4 17:45:49 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to set OPENSSL_ROOT_DIR. commit 8319042976b01faaa7fc5e5ffdf729eeaf9e0bf0 Author: Alan Garny Date: Tue Oct 4 17:18:28 2016 +0200 Travis CI: apparently, we now need to install OpenSSL on macOS. commit e085d9ef22d81ce14a141eb9a7c52a2baea3bf64 Merge: 3bb455a1a 9a63d8284 Author: Alan Garny Date: Tue Oct 4 16:38:45 2016 +0200 Merge branch '\''master'\'' into issue1121. commit 9a63d8284d77f18facce688471010873c92bf14f Author: Alan Garny Date: Tue Oct 4 16:38:12 2016 +0200 Travis CI: some minor cleaning up. Apparently, we don’t need to unlink and then ‘install’ CMake anymore on macOS. commit 3bb455a1a7ac657442147dfb00f78d3a060fe471 Author: Alan Garny Date: Tue Oct 4 16:13:57 2016 +0200 General: some work on using "macOS" (#1121). commit dec62c41cc3e86a8ba22c623603237e06cfcae2f Author: Alan Garny Date: Tue Oct 4 15:37:27 2016 +0200 General: some work on using "macOS" (#1121). commit 24fde3ee7ec19ef43c4890dcf8ce557357008b13 Author: Alan Garny Date: Tue Oct 4 15:15:00 2016 +0200 General: some work on using "macOS" (#1121). commit 23d69a5ba6711dc2373b84f70f449eb62cee2fc9 Author: Alan Garny Date: Tue Oct 4 10:58:32 2016 +0200 Renamed vprLogo.png to vpr.logo [ci skip]. commit a1bfbdec45ee920d19e2c19c1b658312f2ea7268 Merge: 003a362b7 ee7c04c11 Author: David Brooks Date: Mon Oct 3 22:57:17 2016 +0100 Merge branch '\''master'\'' into pythonplugin commit 1a72330dc1f79a3309bdf612fea910e54f525fba Author: Alan Garny Date: Mon Oct 3 18:08:59 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 375e9f88c3cb40e63300e4ca573847c13d088121 Merge: 5ac13ede7 ee7c04c11 Author: Alan Garny Date: Mon Oct 3 14:57:29 2016 +0200 Merge branch '\''master'\'' into issue1115 [ci skip]. commit ef9584dffb736280cb0e80422a98fa3ac76b1332 Merge: 962d2e32f ee7c04c11 Author: Alan Garny Date: Mon Oct 3 14:56:34 2016 +0200 Merge branch '\''master'\'' into issue193 [ci skip]. commit ee7c04c11fb8c4bd556cf8b3865adbc9c32f9ca0 Author: Alan Garny Date: Mon Oct 3 14:55:59 2016 +0200 PMR window: use "reload" rather than "refresh" [ci skip]. commit 5ac13ede735fd0f6ab106e4eb3b46e6eb126ea9d Author: Alan Garny Date: Mon Oct 3 14:50:02 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit 5c777fad96ff9750d9e3483479f45eeb4d2063c1 Merge: 65447cb04 f4c308ba8 Author: Alan Garny Date: Mon Oct 3 14:30:31 2016 +0200 Merge branch '\''master'\'' into issue1115 [ci skip]. commit 962d2e32fac4497e7214c6e1719a1e08b3c3b505 Merge: 22ec2cea6 f4c308ba8 Author: Alan Garny Date: Mon Oct 3 14:29:41 2016 +0200 Merge branch '\''master'\'' into issue193 [ci skip]. commit f4c308ba809bd2878864a5df2e84021b1728e959 Author: Alan Garny Date: Mon Oct 3 14:28:58 2016 +0200 Some minor cleaning up [ci skip]. commit 65447cb04b9ba19c52a717666668447bd9c2babf Author: Alan Garny Date: Mon Oct 3 14:27:31 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit e4d836ef5a948c134041b21d892e68745d615a0e Author: Alan Garny Date: Mon Oct 3 14:25:22 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit 9a35ec50a6d813340f6a6c9906520f0e346dab0f Author: Alan Garny Date: Mon Oct 3 14:24:40 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit 8ecce0e11602018238b8063e89b426435adc7d52 Author: Alan Garny Date: Mon Oct 3 14:22:32 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit b2ba7d8ae17540ecd5ac0017be61893c03972599 Merge: 09bf799bd 6e762a085 Author: Alan Garny Date: Mon Oct 3 14:01:06 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 22ec2cea6a78bac013646b7c7fba9f19fbf1d4d4 Merge: 6951e8001 6e762a085 Author: Alan Garny Date: Mon Oct 3 14:00:04 2016 +0200 Merge branch '\''master'\'' into issue193. commit 6e762a085be35a9ecb1688d2dee8eb58b1de464f Author: Alan Garny Date: Mon Oct 3 13:53:47 2016 +0200 OpenSSL: upgraded to version 1.0.2j (closes #1113). commit 8365962c624af6505034cfadf839db9e6dab486b Author: Alan Garny Date: Sat Oct 1 21:14:40 2016 +0200 Travis CI: although ninja works fine, the overall time gain is negligible, so reverting. BEFORE: 2733.1 linux CONFIG=Release 18 min 36 sec 2733.2 linux CONFIG=Debug 18 min 46 sec 2733.3 osx CONFIG=Release 14 min 29 sec 2733.4 osx CONFIG=Debug 15 min 38 sec AFTER: 2738.1 linux CONFIG=Release 20 min 26 sec 2738.2 linux CONFIG=Debug 18 min 13 sec 2738.3 osx CONFIG=Release 11 min 51 sec 2738.4 osx CONFIG=Debug 12 min 38 sec commit dec7bf8eaf33db2c571c7f043dd46b57c61373d9 Author: Alan Garny Date: Sat Oct 1 20:38:01 2016 +0200 Travis CI: try to use ninja. commit 97442ef95def4efa56ed9c0bc14a984107b9bb9b Author: Alan Garny Date: Sat Oct 1 20:31:06 2016 +0200 Travis CI: try to use ninja. commit b1cba47dec0914866a5652324ec33933f66edd5b Author: Alan Garny Date: Sat Oct 1 20:21:42 2016 +0200 Travis CI: try to use ninja. commit 09bf799bd2061df2fabb09fe15c1c50d40f7dd0e Merge: a370b1968 516000951 Author: Alan Garny Date: Fri Sep 30 18:19:59 2016 +0200 Merge branch '\''master'\'' into issue1115. commit 6951e8001ae1b58a42dda43725d3ec5659ad70f9 Merge: 9494f22c4 516000951 Author: Alan Garny Date: Fri Sep 30 18:19:18 2016 +0200 Merge branch '\''master'\'' into issue193. commit 51600095157d13c7075863214d6d0bd1d6b80f69 Author: Alan Garny Date: Fri Sep 30 18:17:24 2016 +0200 jQuery: upgraded to version 3.1.1 (closes #1119). commit f5d6c9dc1fc02cbc885bf2069c5ecaf8fbae41ac Merge: f17c941df 32066d60e Author: Alan Garny Date: Fri Sep 30 18:16:39 2016 +0200 SUNDIALS: upgraded to version 2.7.0 (closes #1117). commit 32066d60e470cccdbb51c61845629e84a05dc330 Author: Alan Garny Date: Fri Sep 30 17:51:52 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 (#1117). commit 5e78ee737c7c04443bc0d46ec4b43fbd0e5f3e9e Author: Alan Garny Date: Fri Sep 30 17:45:43 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 (#1117). commit 24f8e8d30427dd5cbf2c7763905812b0aeaa8bda Author: Alan Garny Date: Fri Sep 30 17:43:31 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 (#1117). commit f17c941df9a13f0bfc4435f270a4b08ba55037d9 Author: Alan Garny Date: Fri Sep 30 17:22:13 2016 +0200 Oxygen library: upgraded to version 5.26.0 [ci skip]. commit a370b1968a7f23ac26080ec7d07fed3ae1e89172 Author: Alan Garny Date: Fri Sep 30 16:54:26 2016 +0200 Some work on adding support for ApiNATOMY (#1115). commit 9494f22c4e7e7ac56db5f6502b62c3b1d3de1039 Merge: 3dfad487c 91cec6a69 Author: Alan Garny Date: Fri Sep 30 14:52:51 2016 +0200 Merge branch '\''master'\'' into issue193. commit 91cec6a693622cfde47bab5598920d13a52de47c Author: Alan Garny Date: Fri Sep 30 14:43:24 2016 +0200 Some minor cleaning up [ci skip]. commit 121182b260caa844d355e2b9f95682c0c62f79c8 Merge: 73c390bc6 9589d2cbd Author: Alan Garny Date: Fri Sep 30 14:38:21 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes (due to some RPATH/RUNPATH values) (closes #1107). commit 9589d2cbd839ea5355ab17cd7b225a3b83de39fd Author: Alan Garny Date: Fri Sep 30 12:44:18 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 713720de85dcb7684cf11e2fdcc48f8bf275e99c Author: Alan Garny Date: Fri Sep 30 12:42:06 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 16eeeea9f3b5ee11c637787f68a9cf88372ed0ed Author: Alan Garny Date: Fri Sep 30 12:41:53 2016 +0200 Some minor cleaning up. commit 97f738575e1957e8891af98a40800bb812a0a37b Author: Alan Garny Date: Fri Sep 30 12:31:25 2016 +0200 Some minor cleaning up. commit 649a75b877ceb1f7b359b54864c527502d6cad12 Author: Alan Garny Date: Fri Sep 30 09:41:30 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 2e997c2b4ad58220343248b44c22ee0c2337d358 Author: Alan Garny Date: Fri Sep 30 09:07:02 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit e10d435a04aeb88a1df3ba273b4d06f36faec148 Author: Alan Garny Date: Thu Sep 29 19:06:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 73c390bc6b0e074d5befee8ef86d29b619c70bb7 Author: Alan Garny Date: Thu Sep 29 10:55:03 2016 +0200 Some minor cleaning up [ci skip]. commit d2244fa0511fc05b43213b242fc128bce23ee3b6 Author: Alan Garny Date: Tue Sep 27 17:31:42 2016 +0200 Some minor cleaning up [ci skip]. commit 46b828f7f219d17b975706d85adc95f895120656 Author: Alan Garny Date: Tue Sep 27 17:14:36 2016 +0200 Some minor cleaning up [ci skip]. commit 3dfad487c6e8d41a07d394f96c16a184e32df8e2 Author: Alan Garny Date: Fri Sep 23 18:12:18 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit cc9dbe8492b8b1f9c0c9f3576abf389b47d34766 Author: Alan Garny Date: Fri Sep 23 18:10:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 2f2ba1ec2b0ea8c071b9be5fb578344373dff813 Author: Alan Garny Date: Fri Sep 23 16:52:56 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 72832483215ccba817c5c161261efd380c08471a Merge: 70bc3c7fb 4a95a1f3f Author: Alan Garny Date: Thu Sep 22 09:46:51 2016 +0200 Merge branch '\''master'\'' into issue193. commit 4a95a1f3f2b8527bc349321c1062376dada38fd0 Author: Alan Garny Date: Thu Sep 22 09:45:41 2016 +0200 Property editor widget: always cancel any editing when right-clicking on a property. Indeed, say that you are editing a property and then decide to right click (on its name or unit since right-clicking on its value will allow to copy, paste, etc.) to add a graph panel, then the popup menu will correctly show, but the property will still be editable while it shouldn’t be. commit 70bc3c7fb17c07437efdbe4391f735ca853925ff Merge: 3bce5fcc8 40b506e1b Author: Alan Garny Date: Thu Sep 22 08:36:47 2016 +0200 Merge branch '\''master'\'' into issue193. commit 40b506e1bd18e30dfcf02924b0574fe297e2cb7f Author: Alan Garny Date: Thu Sep 22 08:35:35 2016 +0200 Property editor widget: fixed a small problem (following commit 467830c) that prevented us from switching from a property to a section using the keyboard. commit ef472240f48b03e7d31c85b28edfd97ce701cd4f Author: Alan Garny Date: Thu Sep 22 08:31:26 2016 +0200 TreeViewWidget-based objects: use the default selection mode (i.e. QAbstractItemView::SingleSelection) or explicitly specify the one we want to use (see FileBrowserWindowWidget and FileOrganiserWindowWidget). commit d4c8d825f2e37c0199619242973efc79f24dd874 Author: Alan Garny Date: Wed Sep 21 23:07:31 2016 +0200 Property editor widget: fixed a small issue. commit 3bce5fcc801b6b0758311e21a4ff414474886b0b Author: Alan Garny Date: Wed Sep 21 18:57:21 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit f255457f18e840c26498c53ec04ed6e6e4b92294 Merge: 8d5a2a0e5 995a327be Author: Alan Garny Date: Wed Sep 21 18:43:56 2016 +0200 Merge branch '\''master'\'' into issue193. commit 995a327be59126a3825f6abbd4919fcad35e09a5 Author: Alan Garny Date: Wed Sep 21 18:42:13 2016 +0200 Plugins dialog: prevent plugin categories from collapsing. commit 8d5a2a0e51516e4a4e01a94c1546ab7852e76824 Author: Alan Garny Date: Wed Sep 21 18:17:18 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 5de776c74da90f515a3cab29b1c7fd3880811895 Author: Alan Garny Date: Wed Sep 21 17:51:45 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit d31a55aee0077d40777d54bc7f2c5a0d27bd836a Author: Alan Garny Date: Wed Sep 21 17:04:41 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 9938518e07877e69a09bf1b45ab8fbd66bc5dd2f Author: Alan Garny Date: Wed Sep 21 16:32:11 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 6c165115326ce72afc32addf89b78587ff0fc21d Author: Alan Garny Date: Wed Sep 21 15:27:51 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 00ce0bb7969a4b0d8100b0e7622bc1835f43505b Author: Alan Garny Date: Tue Sep 20 22:50:12 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 4156d09f331ea757dfb091b745b63d91429e0207 Merge: 8dd774be1 5aaeaabed Author: Alan Garny Date: Tue Sep 20 22:44:46 2016 +0200 Merge branch '\''master'\'' into issue193. commit 5aaeaabed880a3e03e2f9011a3c29f733d5e0a12 Author: Alan Garny Date: Tue Sep 20 22:43:46 2016 +0200 Plugins dialog: slight improvements to the GUI [ci skip]. commit 8dd774be10f19324e15f2f2b18d8936614dfbb9a Author: Alan Garny Date: Tue Sep 20 21:42:06 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 48ac4444d8c7600762a0307c15553f9227b3ba07 Author: Alan Garny Date: Tue Sep 20 21:30:06 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit ba9a2dceed53b9e8443f25edc0685079aeed5d09 Author: Alan Garny Date: Tue Sep 20 20:39:35 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit db090189a7d73942c87e53fb178b4c18c9133006 Merge: 3d207d053 5399fc1b7 Author: Alan Garny Date: Tue Sep 20 18:53:31 2016 +0200 Merge branch '\''master'\'' into issue193. commit 5399fc1b7e5c3ae97c72bfde89a90972543e7a1d Author: Alan Garny Date: Tue Sep 20 18:51:21 2016 +0200 Some minor cleaning up of indentations and of formatting of some messages. commit 3d207d053687f627f4ce4bed93d1972839fd08eb Author: Alan Garny Date: Tue Sep 20 16:12:30 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit d4c49672e5ee4408d6d45c4f4042a18124b13368 Merge: dd23ed71b 77de1cd3e Author: Alan Garny Date: Tue Sep 20 15:51:41 2016 +0200 Merge branch '\''master'\'' into issue193. commit 77de1cd3e3b249e76704cc840141816677e8ccc1 Author: Alan Garny Date: Tue Sep 20 15:50:31 2016 +0200 Plugins window: make sure that we really select the first category no matter the locale. commit 8a96de8753d602a8e8e8fd589f762caa7666079d Author: Alan Garny Date: Tue Sep 20 15:16:34 2016 +0200 Plugins: make the description of a plugin category available within the (Core) CLI utilities. commit f5de95d2ed4209b2ad74bb7c252756be4d01c0fb Author: Alan Garny Date: Tue Sep 20 15:15:19 2016 +0200 Fixed a translation [ci skip]. commit dd23ed71bd2a0b9cb9c3413f68a0bf6e9c6c9e93 Author: Alan Garny Date: Tue Sep 20 14:40:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit cbccba1464b9e989c3633c6be0540205d6644e6c Author: Alan Garny Date: Tue Sep 20 14:32:17 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 1b7d4e1696fda71e99ed8dc86a2b6d817f00e0df Merge: a4fc8a0d1 8edd831a8 Author: Alan Garny Date: Tue Sep 20 14:10:56 2016 +0200 Merge branch '\''master'\'' into issue193. commit 8edd831a88e640f954a3ef7980937b150cac88a6 Author: Alan Garny Date: Tue Sep 20 14:10:44 2016 +0200 Plugins dialog: some minor cleaning up [ci skip]. commit a4fc8a0d1c8e22e7cd691fc12c1062082e34ae37 Author: Alan Garny Date: Tue Sep 20 13:58:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 227df7aec8e35cefa67bcb41554e40874c5f0db4 Merge: bad2a4f58 3db7766eb Author: Alan Garny Date: Tue Sep 20 13:35:28 2016 +0200 Merge branch '\''master'\'' into issue193. commit 3db7766eb43c7ca2da38760ad86472fff1afc373 Author: Alan Garny Date: Tue Sep 20 13:35:09 2016 +0200 Plugins dialog: some minor cleaning up [ci skip]. commit bad2a4f58dc322e0378d7c312c211f78b28a6a39 Author: Alan Garny Date: Tue Sep 20 11:15:41 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 61975338f0e5246b1637035fe90069453987ded9 Author: Alan Garny Date: Tue Sep 20 11:10:19 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit df179e3e0037bb610ddb355f3ae01dae28a39fa7 Author: Alan Garny Date: Tue Sep 20 08:26:17 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 380e51772786ce672a406dfd90c9a767e4d544e1 Merge: 2aef872e6 29921f4fc Author: Alan Garny Date: Mon Sep 19 21:41:37 2016 +0200 Merge branch '\''master'\'' into issue193. commit 2aef872e696ba765e85f35abbea28fd3fbf52b3a Author: Alan Garny Date: Mon Sep 19 21:34:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 29921f4fc5738dd7e5a11e171d01b8ec5c8aefa3 Author: Alan Garny Date: Mon Sep 19 21:26:30 2016 +0200 Removed the data store interface files from OpenCOR itself. We don’t need them, so… commit 046cfbeb5d1c64157a1f5b540f51d696fc279cea Author: Alan Garny Date: Mon Sep 19 21:14:25 2016 +0200 Some minor cleaning up [ci skip]. commit 491eb04806c51b4b515f52afe579f7c68747bca5 Author: Alan Garny Date: Mon Sep 19 15:16:09 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 6d859bc476e0c0db2b6eea5c739212a7b8f441dc Merge: 45c9c4842 7ddb4fca7 Author: Alan Garny Date: Mon Sep 19 15:13:36 2016 +0200 Merge branch '\''master'\'' into issue193. commit 7ddb4fca762fc1f113bbfddb947cc42c93e5d416 Author: Alan Garny Date: Mon Sep 19 15:11:49 2016 +0200 Fixed a small problem with commit 0818e2a7992ccf4484260563aa23b20227a05599. Indeed, with PluginManager::plugins() and especially PluginManager::loadedPlugins() being sorted, we were now loading the `File Browser` and `File Organiser` windows before the `Physiome Model Repository` window despite the PMR window explicitly asking to be loaded before the two other windows. commit d4cb5a41984f9eab8dba4e5fd61e45ea42d95c72 Author: Alan Garny Date: Mon Sep 19 14:35:02 2016 +0200 make sure that our Core general tests work fine on a system that doesn’t use `.` as a decimal separator. commit d515ee35a9ac956916af1bb800d737c9ab067d5c Author: Alan Garny Date: Mon Sep 19 12:06:58 2016 +0200 CMake: check in [OpenCOR]/cmake/common.cmake (rather than in [libgit2]/CMakeLists.txt) that OpenSSL is available on Linux / OS X. commit 003a362b73eb9051a88b7bebf778dadf8dacb335 Author: David Brooks Date: Mon Sep 19 09:41:12 2016 +0100 General: some work on forcing plugins to reference one of the categories we support (#1111). commit 4e6dec277c889b2b55f4a300e944a5a0e97b4eeb Merge: 00fbf6cfb 1c78e47ce Author: David Brooks Date: Mon Sep 19 09:18:22 2016 +0100 Merge branch '\''master'\'' into pythonplugin commit f54a8007e42f57277a7b0ddf88d4bacfad431920 Merge: 564479959 1c78e47ce Author: David Brooks Date: Mon Sep 19 09:16:47 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 45c9c48422ab761f9a1003069bb68bc1d69d6cdc Author: Alan Garny Date: Sun Sep 18 09:24:01 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 9b55e284a23843ad465cdd73659a181c1daf42e9 Author: Alan Garny Date: Sat Sep 17 23:15:22 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit b4936b2f2f946af6627ec202bf5061657157568b Merge: f2ff81485 1c78e47ce Author: Alan Garny Date: Sat Sep 17 22:50:04 2016 +0200 Merge branch '\''master'\'' into issue193. commit 1c78e47ce47bfe5129cb8ce8e75e0c1d225e8d20 Author: Alan Garny Date: Sat Sep 17 22:48:28 2016 +0200 Property Editor widget: some minor cleaning up [ci skip]. commit f2ff81485479bf8f2d60d6e72057eb52bfb64421 Author: Alan Garny Date: Sat Sep 17 21:24:37 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 0a890283c33c37aa8520a803f4948d9f97563a0a Author: Alan Garny Date: Sat Sep 17 21:15:09 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 494338c2f78426cf07720ff5d3230a8ae6319035 Author: Alan Garny Date: Sat Sep 17 21:12:56 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 444f6ec174b3bfd3f309048951ed08208c4cc052 Author: Alan Garny Date: Sat Sep 17 21:10:37 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit c0259fe3840c265122a9c5a64e4e7352f67d75ca Merge: e93b182c1 abd54279b Author: Alan Garny Date: Sat Sep 17 20:34:35 2016 +0200 Merge branch '\''master'\'' into issue193. commit abd54279b0daa843d84a1165a8200ba825549ed4 Author: Alan Garny Date: Sat Sep 17 20:33:02 2016 +0200 Property Editor widget: some minor cleaning up. commit 467830c52f3db2ef473d6f5a47e1c4969c1ab989 Author: Alan Garny Date: Sat Sep 17 20:28:29 2016 +0200 Property Editor widget: some minor cleaning up [ci skip]. Don’t create a value item when the property is of section type. commit 08d3c92338e9a2009cf66d32dfeac51fbdc2d852 Author: Alan Garny Date: Sat Sep 17 19:51:07 2016 +0200 Property Editor widget: some minor cleaning up [ci skip]. commit a7f66a9ee80d9d4eec0b849c7f1d3385b64cf1b6 Author: Alan Garny Date: Sat Sep 17 18:54:55 2016 +0200 Property Editor widget: a property should be editable by default... … but not its name and unit. commit e93b182c196c8e30046c87fc9b1a280feb766656 Author: Alan Garny Date: Sat Sep 17 10:09:05 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 87efa5e16f1de10b0a4f65b29d3d205b8ee2d1eb Merge: 149f465ad 3d37bd2c8 Author: Alan Garny Date: Sat Sep 17 10:02:39 2016 +0200 Merge branch '\''master'\'' into issue193. commit 3d37bd2c8acfd9f2927f7c8ed3753f7c527eff9c Author: Alan Garny Date: Sat Sep 17 10:01:41 2016 +0200 Replaced (the now obsolete) QStyleOptionViewItemV4 with QStyleOptionViewItem. commit 149f465adb75d010ae513f43d4d95b9d3a3f3bf2 Author: Alan Garny Date: Sat Sep 17 09:36:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit 363cfada5182332279730f9a8f32969e08c38a92 Merge: 9d858e3cb d5b95be96 Author: Alan Garny Date: Sat Sep 17 09:32:58 2016 +0200 Merge branch '\''master'\'' into issue193. commit d5b95be969cf163f90c27f8ffb311d8d13891756 Author: Alan Garny Date: Sat Sep 17 09:32:34 2016 +0200 Plugins window: some minor cleaning up [ci skip]. commit 9d858e3cbb26775d7358541d572b3e80c73156d8 Merge: 23aa3376c 2830adb04 Author: Alan Garny Date: Sat Sep 17 09:20:23 2016 +0200 Merge branch '\''master'\'' into issue193. commit 2830adb0422f44c0798a23496c7ddc3cd73bee25 Author: Alan Garny Date: Sat Sep 17 09:19:21 2016 +0200 Plugins window: some minor cleaning up [ci skip]. commit 23aa3376cf15cad5ccb12f94d0598f452de1cfcf Merge: 460e188bd e896f7cd1 Author: Alan Garny Date: Fri Sep 16 18:17:50 2016 +0200 Merge branch '\''master'\'' into issue193. commit e896f7cd16cc5ac27650cc251e2f655c5a408f5e Author: Alan Garny Date: Fri Sep 16 18:11:36 2016 +0200 Plugins: added an invalid category for invalid plugins. Converted a couple of files from ANSI to UTF-8. commit 460e188bd715b3fcc7b4f05d495a2addef09ffe0 Merge: 3fda59f64 a731fc83f Author: Alan Garny Date: Fri Sep 16 18:05:56 2016 +0200 Merge branch '\''master'\'' into issue193. commit a731fc83f0c4765d4ae96a843fb95633ed38194a Author: Alan Garny Date: Fri Sep 16 18:05:02 2016 +0200 Plugins: added an invalid category for invalid plugins. commit e3ecd65f52a78217f11357e161122f69667a8640 Author: Alan Garny Date: Fri Sep 16 17:46:20 2016 +0200 Plugins: added an invalid category for invalid plugins [ci skip]. commit 317f30e4eae304f7d952a8ee369101f1d63a45a7 Author: Alan Garny Date: Fri Sep 16 16:57:40 2016 +0200 Some minor cleaning up [ci skip]. commit 3fda59f64fe5b02cb8985bcf6afc087686a6d4f5 Merge: bfb77e0cb 607caf7e7 Author: Alan Garny Date: Fri Sep 16 16:47:02 2016 +0200 Merge branch '\''master'\'' into issue193. commit 607caf7e7348ebb30299ad5effbaf2b7c7ec17a6 Author: Alan Garny Date: Fri Sep 16 16:46:03 2016 +0200 Property Editor widget: a property should be editable by default. commit bfb77e0cbeac5ce67471697116836bc952b2cc59 Merge: f8af5278b 5575ed6e1 Author: Alan Garny Date: Fri Sep 16 15:55:38 2016 +0200 Merge branch '\''master'\'' into issue193. commit 5575ed6e1a6fc97fcc344196b5d94d9e5c904592 Author: Alan Garny Date: Fri Sep 16 15:51:38 2016 +0200 Address a compilation issue on Windows and Linux. commit f8af5278b1dac10ac8e5ff3bd4bfc788c8378fe2 Author: Alan Garny Date: Fri Sep 16 15:27:19 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit f91e82b20c7818e207f5679f050b920959767282 Merge: dbae23740 b1016aa0b Author: Alan Garny Date: Fri Sep 16 15:09:55 2016 +0200 Merge branch '\''master'\'' into issue193. commit b1016aa0ba647fc60a7a92e75acd9340d837b65d Author: Alan Garny Date: Fri Sep 16 15:04:36 2016 +0200 Plugins window: only create a plugin category when necessary [ci skip]. commit 52343e492688e60c09e310b47bca29ce1925540e Author: Alan Garny Date: Fri Sep 16 14:50:13 2016 +0200 Added a core CLI function to retrieve name of a plugin category as a string [ci skip]. commit 2c124c5a0395445d37590cac34de546aaa7882a4 Author: Alan Garny Date: Fri Sep 16 14:48:49 2016 +0200 Some minor cleaning up [ci skip]. commit b93b6dbfa2b85b5f6846a6fd603051a1e5542368 Author: Alan Garny Date: Fri Sep 16 13:05:13 2016 +0200 Some minor cleaning up [ci skip]. commit 3863edd42df41aafb8a0a61a79ada7bb61af0e66 Author: Alan Garny Date: Fri Sep 16 12:09:41 2016 +0200 Some minor cleaning up [ci skip]. We don’t actually need to call `setAutoTristate(true)` on a standard item that will effectively be set to partially checked. commit 0b8632f8f70cc7c3f7048f8bdbc289d62a77edd6 Author: Alan Garny Date: Fri Sep 16 11:22:46 2016 +0200 Plugins window: some minor cleaning up (following issue #1111) [ci skip]. commit 1cb9b1e1154b0c6d21d37357516fd5876fba70f0 Author: Alan Garny Date: Fri Sep 16 11:20:20 2016 +0200 Plugins window: some minor cleaning up (following issue #1111) [ci skip]. commit dbae2374069b180151e60444f30ebc67a2e521fd Merge: 12fbeb4bf a6fb7e66c Author: Alan Garny Date: Fri Sep 16 00:14:20 2016 +0200 Merge branch '\''master'\'' into issue193. commit a6fb7e66cd8100eba14b9fa513cb02fdf7108698 Merge: f2751d212 4dc4c4fda Author: Alan Garny Date: Fri Sep 16 00:12:45 2016 +0200 General: force plugins to reference one of the categories we support (closes #1111). commit 4dc4c4fdadf41ba9e9ad48f50cb2a6f10299b3c2 Author: Alan Garny Date: Thu Sep 15 23:25:24 2016 +0200 General: some work on forcing plugins to reference one of the categories we support (#1111). commit 6812066b96a91194ca0b2140cf5fd2a05bd69068 Author: Alan Garny Date: Thu Sep 15 21:09:04 2016 +0200 General: some work on forcing plugins to reference one of the categories we support (#1111). commit 31158ef095690ad1b0c854a04152ce3e7642bac0 Author: Alan Garny Date: Thu Sep 15 20:32:30 2016 +0200 General: some work on forcing plugins to reference one of the categories we support (#1111). commit 35c628cfc428667be005d756c8d2e08817e01a5a Author: Alan Garny Date: Thu Sep 15 20:19:13 2016 +0200 General: some work on forcing plugins to reference one of the categories we support (#1111). commit f2751d21283f6374bb536f1d9f376c0f3b29624e Author: Alan Garny Date: Thu Sep 15 18:26:32 2016 +0200 Some minor cleaning up [ci skip]. commit 12fbeb4bf8f978167a32ddf6f8fe65a95a45d839 Merge: ff250ddb7 8b5486575 Author: Alan Garny Date: Thu Sep 15 17:19:16 2016 +0200 Merge branch '\''master'\'' into issue193. commit 8b5486575f910a21fc99528d2dfa28588f70ed55 Author: Alan Garny Date: Thu Sep 15 17:19:03 2016 +0200 Plugins window: some minor cleaning up [ci skip]. commit ff250ddb73aee07f7ade36f7bb0627dbb145456d Merge: 9a1f05189 88abf8872 Author: Alan Garny Date: Thu Sep 15 17:06:30 2016 +0200 Merge branch '\''master'\'' into issue193. commit 88abf887274d31f4192ee9f60565adeaf996d274 Author: Alan Garny Date: Thu Sep 15 17:06:19 2016 +0200 Some minor cleaning up [ci skip]. commit 9a1f051898f61ccf8ed1a45558378870549503fc Merge: 1541a74cb 0818e2a79 Author: Alan Garny Date: Thu Sep 15 16:28:08 2016 +0200 Merge branch '\''master'\'' into issue193. commit 0818e2a7992ccf4484260563aa23b20227a05599 Author: Alan Garny Date: Thu Sep 15 16:27:35 2016 +0200 Some minor refactoring of our lists of plugins. commit 1541a74cb272ae06264ed471bd5164b1da26f4a6 Author: Alan Garny Date: Thu Sep 15 15:31:33 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit d892bdbf467488b5b88329bbf8b6f450b36c592c Author: Alan Garny Date: Thu Sep 15 15:21:00 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit aad51d8bf75c5bddab37cc1e8d59b30df65c4bbe Merge: 27f70fe73 f93e311a5 Author: Alan Garny Date: Thu Sep 15 15:15:19 2016 +0200 Merge branch '\''master'\'' into issue193. commit f93e311a533e9913cae26ea83528646597eee0b5 Author: Alan Garny Date: Thu Sep 15 15:14:41 2016 +0200 Some minor cleaning up [ci skip]. commit 27f70fe737abcd48d5111667f07360957b4979c5 Author: Alan Garny Date: Thu Sep 15 15:02:01 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins (#193). commit d408a81dcd09eca77428e176029b6a98c2cc3244 Author: Alan Garny Date: Wed Sep 14 23:31:05 2016 +0200 Revert "Updated our prerequisites page following the release of Xcode 8.0 [ci skip]." This reverts commit 7876ace01bb1a0743e24f4d8539df1b9062f7fc0. commit 7876ace01bb1a0743e24f4d8539df1b9062f7fc0 Author: Alan Garny Date: Wed Sep 14 18:03:45 2016 +0200 Updated our prerequisites page following the release of Xcode 8.0 [ci skip]. commit e55cd09b3ca138475a0eccd48e896ce4a2b9fdec Author: Alan Garny Date: Tue Sep 13 11:48:39 2016 +0200 Some minor cleaning up [ci skip]. commit 9d082cc7bbc3c6c8c2a7ab0916893332649a79e6 Author: Alan Garny Date: Mon Sep 12 16:27:12 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class [ci skip]. commit 1c1d09c5b27b4b3615d1d3cf8e3de4fbce78a677 Author: Alan Garny Date: Mon Sep 12 16:26:01 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class [ci skip]. commit d8103bb296afbb785a8e31acb186016adb821329 Author: Alan Garny Date: Mon Sep 12 15:16:54 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class. commit bc4ca134d7c02a63ac9863ff9aace5b4e34ea659 Author: Alan Garny Date: Mon Sep 12 13:45:16 2016 +0200 Downloads page: moved our latest snapshot (i.e. 0.5RC) in first position and make it clear that it is our 0.5RC [ci skip]. commit 8b6818b01c62bf372d91e20bb70a7a236607238c Author: Alan Garny Date: Sun Sep 11 00:29:17 2016 +0200 CMake: make use of CMAKE_PARSE_ARGUMENTS() rather than determining the arguments ourselves. commit afee8456f05810f10642ed3f3999d6382a08b742 Author: Alan Garny Date: Sun Sep 11 00:09:12 2016 +0200 CMake: make use of CMAKE_PARSE_ARGUMENTS() rather than determining the arguments ourselves. commit 439e9dbfcfb77f35ea8659cb5eace4030a6524b8 Author: Alan Garny Date: Sat Sep 10 23:51:53 2016 +0200 CMake: make use of CMAKE_PARSE_ARGUMENTS() rather than determining the arguments ourselves. commit f512622f6258ea74f54243dc199418ae89ca58ca Author: Alan Garny Date: Sat Sep 10 23:45:17 2016 +0200 CMake: make use of CMAKE_PARSE_ARGUMENTS() rather than determining the arguments ourselves. commit 3f5acc6a914178c09cbfc28906ccf1a5989a434a Author: Alan Garny Date: Sat Sep 10 23:39:57 2016 +0200 Some minor cleaning up [ci skip]. commit 0fe9c83385f0608094eb0b61870f377230d2cd24 Author: Alan Garny Date: Sat Sep 10 00:13:35 2016 +0200 OS X / macOS logo: updated to that of Finder [ci skip]. commit 40716443013043baf65703d34b1899ceebc4b437 Author: Alan Garny Date: Fri Sep 9 20:42:05 2016 +0200 Some minor cleaning up [ci skip]. commit b9cf1f93cd84cc5bead40fb118952ceb556b9d16 Author: Alan Garny Date: Fri Sep 9 17:54:33 2016 +0200 Updated the what'\''s new page as a result of OpenCOR working on the forthcoming macOS 10.12 (Sierra) [ci skip]. commit 00fbf6cfb289aec6acbca1324f87fec9dedd81d1 Author: David Brooks Date: Thu Sep 8 22:00:01 2016 +0100 Correctly initialise PYTHONHOME (#1085). This allows the shell to find Python libraries bundled with OpenCOR. commit 4bdabf4d1b6865adccbe6b10c55abd40d6dfbbe5 Author: David Brooks Date: Thu Sep 8 21:51:55 2016 +0100 Work on the Python build system (#1085). commit bcf4ad086495253ba872635c9de3cee3177caaa6 Merge: 7dbceb642 ab580bda1 Author: Alan Garny Date: Thu Sep 8 17:26:02 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes (due to some RPATH/RUNPATH values) (closes #1107). commit ab580bda15afbf85af2cc514d51ddb05588642df Author: Alan Garny Date: Thu Sep 8 16:42:30 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 4c84d8df06bf7337b4ecaf6d056b2db0d4566307 Merge: c40b02821 7dbceb642 Author: Alan Garny Date: Thu Sep 8 15:27:11 2016 +0200 Merge branch '\''master'\'' into issue1107. commit 7dbceb6428621f23dfc40a6944139a6baa097510 Author: Alan Garny Date: Thu Sep 8 15:26:56 2016 +0200 Some minor cleaning up [ci skip]. commit c40b0282187991615adcb5f699f8d497c8129923 Author: Alan Garny Date: Thu Sep 8 15:22:45 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 8ba6bc721afae9d460a4d51761b2fa732d424904 Author: Alan Garny Date: Thu Sep 8 14:26:53 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 39aa25110b801b41be7e74e0f409897b7d584524 Merge: fc24626f9 8a0e398a2 Author: Alan Garny Date: Thu Sep 8 14:20:29 2016 +0200 Merge branch '\''master'\'' into issue1107. commit 8a0e398a2e140a2bad619a539292c30f0dbc6789 Author: Alan Garny Date: Thu Sep 8 14:19:28 2016 +0200 Some minor cleaning up [ci skip]. commit fc24626f9344367a3ba1ac6af1a062ff2744ea02 Author: Alan Garny Date: Thu Sep 8 13:46:24 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 7fd2b10f532f9aae935bddf037296433bf3359a4 Author: David Brooks Date: Thu Sep 8 12:27:49 2016 +0100 Clean up Python build and use new packaging macros (#1085). commit 125ba7c333fc441c40731854200f02a160e7446a Author: Alan Garny Date: Thu Sep 8 11:53:27 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 1f1254d0765c30bf2d452ea5fef38fb3fd5a0d32 Author: Alan Garny Date: Thu Sep 8 10:37:40 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 1714f7ade349335ef7b71e3c310e8ab7f6c113c9 Author: Alan Garny Date: Thu Sep 8 09:39:18 2016 +0200 Some minor cleaning up [ci skip]. Related to issue #1107. We don’t need to set the `RPATH` value for a pre-built plugin, hence we don’t the `DIRECT` mode for `SET_RPATH()` and don’t need to check in `cmake/setrpath.sh` whether the `RPATH` value is different. commit cececc82b585e103052b61c7ea28f0d40a733522 Author: Alan Garny Date: Thu Sep 8 09:33:18 2016 +0200 Some minor cleaning up [ci skip]. commit 94fe8b8c0738d56c17a2e9418c48b935e1ea74dd Author: Alan Garny Date: Wed Sep 7 23:49:07 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes (due to some RPATH/RUNPATH values) (closes #1107). Argh, to set the RPATH of a library that is already correct changes its SHA-1 value, which means that every time we build OpenCOR on Linux, we need to redownload all of our prebuilt plugins. So, now, we check the RPATH value and compare it against the one we want to use. commit e595a38677ce1b47639b8c539f75b9a5e9f858df Merge: e0fabe120 2a60aa055 Author: Alan Garny Date: Wed Sep 7 22:27:54 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes (due to some RPATH/RUNPATH values) (closes #1107). commit 2a60aa05571bf0f9c2c6997bbc51145e86646224 Author: Alan Garny Date: Wed Sep 7 21:24:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 7f2f8186f2f4c4856a7d39ccb0908a83f5d07f8e Merge: 330fba13a f900b9842 Author: David Brooks Date: Wed Sep 7 18:35:49 2016 +0100 Merge branch '\''pythonplugin'\'' into pythondevel commit f900b984254894f2301b5d39e1ea3fbd1083ade3 Merge: a51420f92 6b0b38f3e Author: David Brooks Date: Wed Sep 7 18:34:23 2016 +0100 Merge branch '\''openssl'\'' into pythonplugin commit a51420f927c426ad89b39ae276b7d2639a494522 Merge: d6f97ea49 753b217e5 Author: David Brooks Date: Wed Sep 7 18:32:01 2016 +0100 Merge branch '\''packaging'\'' into pythonplugin commit 4b7c57820cd2b2cf1c70757784166366050afda1 Author: Alan Garny Date: Wed Sep 7 18:49:56 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 90d4fb276ec0df40ad6af194a9a264833aacc560 Author: Alan Garny Date: Wed Sep 7 18:49:15 2016 +0200 Merge branch '\''master'\'' into issue1107. commit e05395b24fb5f5c70e7c70d58905abb248957e93 Merge: 4c2252cb9 e0fabe120 Author: Alan Garny Date: Wed Sep 7 18:45:40 2016 +0200 Merge branch '\''master'\'' into issue1107. commit e0fabe1200f50842ee1d15d8978a2f6e30ba746c Author: Alan Garny Date: Wed Sep 7 18:43:25 2016 +0200 Some minor cleaning up [ci skip]. commit 4c2252cb9cb6909cc04dc2af979c2e379484ef04 Author: Alan Garny Date: Wed Sep 7 18:34:56 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 135c91c47bfac38eca47862963d2fde9df2a65e7 Author: Alan Garny Date: Wed Sep 7 18:03:53 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 6b0b38f3ee0c2622f598bf70188d983010656f33 Merge: a3a0a1c70 f0fd62e7f Author: David Brooks Date: Wed Sep 7 16:53:55 2016 +0100 Merge branch '\''packaging'\'' into openssl commit f0fd62e7feaa39d126b6f29267046f6431d930c3 Author: David Brooks Date: Wed Sep 7 16:53:25 2016 +0100 gitignore directories containing pre-built packages (#1106). commit a3a0a1c70eb170c52dac76030ee9ba264fc9b849 Author: David Brooks Date: Wed Sep 7 16:49:12 2016 +0100 Windows OpenSSL 1.0.2h needs patching to build -- see https://github.com/openssl/openssl/issues/1545 (#1101). commit 026f4da6311007c4f592e7fc6b875c27813bcc62 Author: David Brooks Date: Wed Sep 7 16:11:58 2016 +0100 Get OpenSSL building under Windows (#1101). commit e6f3ebad3073a737e804590832e7c1ba05dac78d Author: Alan Garny Date: Wed Sep 7 16:03:46 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit cc9a67e027effa47ddd8612537a095b9635e4f01 Author: Alan Garny Date: Wed Sep 7 15:59:50 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 3087034454eaf7c4963a397aa1d260d4a5c5b3f1 Author: Alan Garny Date: Wed Sep 7 15:32:23 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit f11b54067341a03d40cf0c379b8741e78c26e5db Merge: 712c8a979 073bb1d0c Author: Alan Garny Date: Wed Sep 7 15:22:52 2016 +0200 Merge branch '\''master'\'' into issue1107. commit 073bb1d0c8f839cff4dea8b30c07005d98fa68f5 Author: Alan Garny Date: Wed Sep 7 15:22:31 2016 +0200 Some minor cleaning up [ci skip]. commit 712c8a9799b43089fb771596f437ccb8a5b45824 Author: Alan Garny Date: Wed Sep 7 15:21:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes (#1107). commit 681d85005f3f4514c4f33d5d36c5f8fef6ceb076 Merge: 36d5e5b74 753b217e5 Author: David Brooks Date: Wed Sep 7 12:24:36 2016 +0100 Merge branch '\''packaging'\'' into openssl commit 753b217e5c1f35d78f737a62af1b279ec1239a34 Author: David Brooks Date: Wed Sep 7 12:22:06 2016 +0100 Don'\''t duplicate `CHECKED_FILES` list when generating `RETRIEVE_PACKAGE_FILE` code (#1106). commit 8d9fd7899b43fae289ad7ca73d90a453e20bda0d Author: David Brooks Date: Wed Sep 7 12:18:22 2016 +0100 Get example of packaging an external library working under Windows (#1106). commit 36d5e5b74fa522df626399b926c30521900feb49 Author: David Brooks Date: Wed Sep 7 09:50:34 2016 +0100 Use the `1_0_2h` release of OpenSSL (#1088 and #1101). commit d8fa9ac9f18789a5d1d721bbf20618b526e27ece Author: Alan Garny Date: Wed Sep 7 10:39:07 2016 +0200 Some minor cleaning up [ci skip]. commit cabdd7ccbeae45fbc105da0a36bde8f28c0bd591 Author: Alan Garny Date: Wed Sep 7 09:38:21 2016 +0200 Some minor cleaning up [ci skip]. commit 59f76da088ecd7e432658645ac8eb93b107f2fea Author: David Brooks Date: Tue Sep 6 23:05:20 2016 +0100 Work on OpenSSL plugin (#1101). Use new packaging system for OpenSSL libraries; cleanup paths in OS/X libraries; use OpenSSL 1.0.2 because libgit2 doesn'\''t like 1.1.0. commit 79ebee61436f12a5ccdd4c906d14b8e3b6042243 Merge: cb7f33010 8ae2192b1 Author: David Brooks Date: Tue Sep 6 22:27:45 2016 +0100 Merge branch '\''packaging'\'' into openssl commit cb7f330103bd3d8022bee94a15af6e4be643d6cc Merge: d451211cf f8414eb3c Author: David Brooks Date: Tue Sep 6 22:27:17 2016 +0100 Merge branch '\''master'\'' into openssl commit 8ae2192b1aa7c82125356cd9461f9c8ebe23709f Author: David Brooks Date: Tue Sep 6 22:26:30 2016 +0100 Use CHECK_FILES macro when retrieving binary files (#1106). commit 39fb5ccf02321c6a55e961260687c3c1c317706f Author: David Brooks Date: Tue Sep 6 22:13:32 2016 +0100 Provide a sample plugin to demonstrate and test the use of packaged pre-built libraries (#1106). commit 3b3d09bedc3233ced7b7ca044e0f2d1fc9af3697 Author: David Brooks Date: Tue Sep 6 21:46:28 2016 +0100 Provide a mechanism to package and download pre-built libraries (#1106). commit f8414eb3c923813e2e7956050ddb1ded0b5a432a Author: Alan Garny Date: Mon Sep 5 22:16:05 2016 +0200 New snapshot. commit d9bafa0ec70aa8777b8dcbdc2fc3782079e5b1f1 Author: Alan Garny Date: Mon Sep 5 22:14:04 2016 +0200 Removed support for Mac OS X 10.7 (closes #1105). commit fa8dbbabbf078c895456559ecf1e76d100b953ba Author: Alan Garny Date: Mon Sep 5 21:59:05 2016 +0200 Revert "New snapshot." [ci skip]. This reverts commit 8a75a79e69cc5fdd2fb07fd7ab564a1b6a1946e7. commit 8a75a79e69cc5fdd2fb07fd7ab564a1b6a1946e7 Author: Alan Garny Date: Mon Sep 5 17:23:22 2016 +0200 New snapshot. commit b56daa286faa4b748553fd91dd2cd326faea571f Author: Alan Garny Date: Mon Sep 5 17:22:48 2016 +0200 CellML Text view: oops, forgot to update one of our CLI tests! commit ab6fe4b4cfb16f3ca8ee649633083cbae9fb328b Author: Alan Garny Date: Mon Sep 5 17:16:52 2016 +0200 Revert "New snapshot." [ci skip]. This reverts commit e872152eea11535b59b663af1179c0c4931a0dbf. commit e872152eea11535b59b663af1179c0c4931a0dbf Author: Alan Garny Date: Mon Sep 5 16:50:28 2016 +0200 New snapshot. commit 5b10a831316bff55d2b507afe1278ae72fe6a55e Author: Alan Garny Date: Mon Sep 5 16:48:25 2016 +0200 Slight updates to our user documentation [ci skip]. commit 4dffa2733638af037cb29f2b9d647ffe65871311 Author: Alan Garny Date: Mon Sep 5 16:15:48 2016 +0200 Slight updates to our user documentation [ci skip]. commit c5f64c327ebd1c67bcb035652a3d3423a8f7d501 Author: Alan Garny Date: Mon Sep 5 15:39:17 2016 +0200 Slight updates to our user documentation [ci skip]. commit 273b62eccc807b245da6d407a32fd94b15ccf480 Author: Alan Garny Date: Mon Sep 5 15:38:52 2016 +0200 Slight updates to our user documentation [ci skip]. commit d243c745a9479d59828f4f7a783138e5d51e147c Author: Alan Garny Date: Mon Sep 5 15:38:39 2016 +0200 Slight updates to our user documentation [ci skip]. commit 52f0b72e1ee0dd022eb28acf6cf9bee838229a87 Author: Alan Garny Date: Mon Sep 5 15:02:41 2016 +0200 Revert "New snapshot." [ci skip]. This reverts commit 665f711d21e12a995443c3738c6847dab4b7e065. commit 665f711d21e12a995443c3738c6847dab4b7e065 Author: Alan Garny Date: Mon Sep 5 14:20:07 2016 +0200 New snapshot. commit a600a717eb0f2d12906cd9ce4a1c2e1ca086ff83 Merge: 4a899c65f d3ee01ba4 Author: Alan Garny Date: Mon Sep 5 13:49:18 2016 +0200 Updated the documentation in preparation for the 0.5 release (closes #1047). commit d3ee01ba4633dffa71d75ad25329c1707d5b47e8 Author: Alan Garny Date: Mon Sep 5 13:14:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit b8f9b82d931fe4b41b2b6b707890340039ca531d Author: Alan Garny Date: Mon Sep 5 13:04:54 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 65001c28dca83b53c1d728956d07bdd8def539dc Author: Alan Garny Date: Sun Sep 4 20:42:22 2016 +0200 Single Cell view + SED-ML: make a SED-ML file the default way to export a simulation to SED-ML. The user can still ‘manually’ decide to export to a SED-ML file or a COMBINE archive. commit 330fba13a7cfda77ad5b0845acadc6fa3824d5b7 Merge: 3f828d920 4a899c65f Author: David Brooks Date: Sun Sep 4 19:39:29 2016 +0100 Merge branch '\''master'\'' into pythondevel commit d6f97ea49082402c885c47d0ea8321cb5ee1d184 Merge: feecc002f 4a899c65f Author: David Brooks Date: Sun Sep 4 19:39:08 2016 +0100 Merge branch '\''master'\'' into pythonplugin commit d451211cf43c385bd58bbb9e54ad5c937d7b3aaf Merge: 6fc689de0 4a899c65f Author: David Brooks Date: Sun Sep 4 19:38:42 2016 +0100 Merge remote-tracking branch '\''upstream/master'\'' into openssl commit e02acddba8960e414d57c69b7cea8f8849fc79ab Author: Alan Garny Date: Sun Sep 4 20:34:52 2016 +0200 Single Cell view + SED-ML: updated the tool tip of an action. commit 46e7dcbcc3df7712349d5eb65354983fafbce3b7 Author: Alan Garny Date: Sun Sep 4 20:29:30 2016 +0200 Single Cell view + SED-ML: make it possible to open the referenced CellML file using the default CellML view. Also list the Single Cell view as a possible view. commit 1f99cb8efbf07699dd4e180f90c0e5af90533a3c Author: Alan Garny Date: Sun Sep 4 20:26:57 2016 +0200 Some minor cleaning up. commit 3f828d92039fd7d383fb185f3a26c1e0c901af1b Merge: 6c364babd 6fc689de0 Author: David Brooks Date: Sun Sep 4 19:22:50 2016 +0100 Merge branch '\''openssl'\'' into pythondevel commit feecc002f3a3c9667ca15ece2dd72bda10d7c075 Merge: 235e22353 6fc689de0 Author: David Brooks Date: Sun Sep 4 19:22:32 2016 +0100 Merge branch '\''openssl'\'' into pythonplugin commit 6fc689de0c07dd8e973a79cf221e862b350b2944 Author: David Brooks Date: Sun Sep 4 19:20:34 2016 +0100 Specify branch of OpenSSL sub-module. commit 6c364babde797a31ce726ca91ee3a98e796c1918 Merge: ece968493 95cc1d11c Author: David Brooks Date: Sun Sep 4 19:19:39 2016 +0100 Merge branch '\''openssl'\'' into pythondevel commit bf3aaabc0a36c669b6ac4c73ef693c2229096c3b Author: Alan Garny Date: Sun Sep 4 18:51:55 2016 +0200 CellML support: replaced the default CellML logo with something that is easier to use. Indeed, the one we were using is twice as high than wide, which is not ideal since all our other icons are as high as wide. commit 2ed6b32266502366644d60021760798f81067075 Author: Alan Garny Date: Sun Sep 4 12:16:10 2016 +0200 Revert "CellML support: enlarged the CellML logo." This reverts commit 9190e2bb15e891f8650e996d18478902eba0c1ca. commit 9190e2bb15e891f8650e996d18478902eba0c1ca Author: Alan Garny Date: Sun Sep 4 12:10:52 2016 +0200 CellML support: enlarged the CellML logo. commit c4971d3b6387e7a92e2323e274cceb2c5e67ab39 Author: Alan Garny Date: Sun Sep 4 12:10:31 2016 +0200 Single Cell view: fixed a small problem with the development mode action not always being properly enabled/disabled. commit 6f014b07cb812bb2772fc02b7b4f8cb870a68886 Author: Alan Garny Date: Sun Sep 4 09:42:27 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit f339d2a4c32e9b32037e983a852db7488ed43820 Author: Alan Garny Date: Sun Sep 4 09:16:38 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit f7be7b5d210ab3c0218eb59f4ef7a158f5ec44ce Author: Alan Garny Date: Sun Sep 4 08:43:32 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 6de64e7f34d015e35d45ba77c2c6fae3b7e7e576 Author: Alan Garny Date: Sat Sep 3 23:48:28 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 2c6cec46e629f9dbffc001e5aac5a2f075c93aa6 Author: Alan Garny Date: Sat Sep 3 23:09:27 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit b7153c8dddf8d48f5c52c3d07fc86f2466579bf4 Author: Alan Garny Date: Sat Sep 3 22:31:30 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 8fd96bec1a1baed1c1bbe45312188222f149efa2 Author: Alan Garny Date: Sat Sep 3 21:24:16 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit e264e393aa3684350348946c3b9740c6a0359f1c Author: Alan Garny Date: Sat Sep 3 18:28:59 2016 +0200 PMR window: fixed a small problem with the wrong tool tip being sometimes used for showing/hiding exposure files. commit 625812ea34168dfa9fd7eedfc41ac4bdaf222fee Author: Alan Garny Date: Sat Sep 3 18:10:51 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 20c6708aa58ba6302a4db9d7673f3e243977aff2 Author: Alan Garny Date: Sat Sep 3 18:08:36 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 5c350a607794bea5335bd838bd6af9eca7e29fb4 Author: Alan Garny Date: Sat Sep 3 17:38:55 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 6df77baa91d53c4f4519acde2e36a263c9f02d99 Author: Alan Garny Date: Sat Sep 3 17:12:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit b6f3ad2d13466de3387adb7cdd961c22549ca2a0 Merge: c9f6ea302 4a899c65f Author: Alan Garny Date: Sat Sep 3 17:03:33 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 4a899c65faf5c05616a6e1774609594b3422ca38 Author: Alan Garny Date: Sat Sep 3 17:02:51 2016 +0200 Tree view widget: improved our handling of context menus [ci skip]. Indeed, while working on issue #1047, I noticed that we couldn’t delete a group of items in the File Organiser window anymore. In fact, we haven’t been able to do this since OpenCOR 0.2! commit c9f6ea3029f8abee1ed5728c03c1d4f8fb0c69dc Merge: e6dfdfd13 8d73184ed Author: Alan Garny Date: Sat Sep 3 16:57:32 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 8d73184ed1d95b11239dcf87abdc159318e7715e Author: Alan Garny Date: Sat Sep 3 16:56:49 2016 +0200 Tree view widget: improved our handling of context menus [ci skip]. Indeed, while working on issue #1047, I noticed that we couldn’t delete a group of items in the File Organiser window anymore. In fact, we haven’t been able to do this since OpenCOR 0.2! commit 74f8f04322aa97e98b3c4b6762363b53f1f85612 Author: Alan Garny Date: Sat Sep 3 16:27:53 2016 +0200 File Organiser window: fixed a small problem with the tooltip shown for a folder [ci skip]. commit 6da844fa30d1bcf0b1ed12959bfc84df65e19b9b Author: Alan Garny Date: Sat Sep 3 16:11:27 2016 +0200 Some minor cleaning up [ci skip]. commit e6dfdfd138cf8022776413eb802650bb3cf30e67 Author: Alan Garny Date: Sat Sep 3 15:19:10 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit b92a291b5bfdc1859de03d3f3bbb3d67bbb05310 Author: Alan Garny Date: Sat Sep 3 14:57:49 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 3cfaee55cef0361fc251538c728b0836eecabde5 Author: Alan Garny Date: Sat Sep 3 12:03:37 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 8eac549960e3ceeea9c78e56e1507c9020c809b7 Author: Alan Garny Date: Sat Sep 3 12:02:25 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit ec0ea851130e6fd957e9d3d1efa3e8d9235d8580 Merge: 7ff4493fb 27ebd23ad Author: Alan Garny Date: Sat Sep 3 11:59:38 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 27ebd23ad8a3b3c850848961a6314a2bd97ed721 Author: Alan Garny Date: Sat Sep 3 11:58:59 2016 +0200 Single Cell view: some additional work on fixing the style of the toolbar being sometimes wrong (#1082). Oops, I was asking for a busy widget to be shown when retrieving remote CellML 1.1 dependencies, but we shouldn’t do that when running the CellML tools from the CLI. commit 0caf304e9574c0e89dc92b4fdf5e9f1b853c80e7 Author: Alan Garny Date: Sat Sep 3 11:35:08 2016 +0200 Some minor cleaning up [ci skip]. commit 7ff4493fb7baec6b188b9857c46554846066a48b Author: Alan Garny Date: Sat Sep 3 11:10:53 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit f0c5670693cf48ba223514d789e7caddddfcd5c6 Author: Alan Garny Date: Sat Sep 3 11:08:20 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 7dbdaf324e5027d5582b9dd1562033048687c902 Author: Alan Garny Date: Sat Sep 3 10:51:01 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit b19cb2c83b243d417399d1f2ff5bc3893f749d92 Merge: 82256c20f ba6e42bdc Author: Alan Garny Date: Sat Sep 3 10:12:26 2016 +0200 Merge branch '\''master'\'' into issue1047. commit ba6e42bdcc5fcc69c035a79fc9f210a762831923 Author: Alan Garny Date: Sat Sep 3 10:11:41 2016 +0200 Slight update to our downloads page [ci skip]. Related to issue #1102. commit eee73a8956857c169dd6e3db8dbe44e28a803518 Merge: 09e08170e 2a55c001b Author: Alan Garny Date: Sat Sep 3 10:10:25 2016 +0200 SUNDIALS-related plugins: now use their new URL (closes #1102). commit 2a55c001b1ff31ac1991222fba5b80074bb1e6eb Author: Alan Garny Date: Sat Sep 3 09:46:34 2016 +0200 SUNDIALS-related plugins: some work on using their new URL (#1102). commit 75b321d14f4c1d29eea911c017d10aeec5af4b3a Author: Alan Garny Date: Sat Sep 3 09:36:50 2016 +0200 SUNDIALS-related plugins: some work on using their new URL (#1102). commit 82256c20fc03f868371293cc85a4cf1b5bfd8afb Author: Alan Garny Date: Sat Sep 3 09:22:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 0b13bbb487abffc79db6da04642a35f90a04cedb Author: Alan Garny Date: Sat Sep 3 09:02:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 0fe36d5cbf57f4d60d9722df088e4cda6fb36660 Merge: d722437e2 09e08170e Author: Alan Garny Date: Fri Sep 2 23:28:03 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 09e08170e792475bebcce9f8850c5f111c1b38b8 Merge: 147e0d748 cabd43628 Author: Alan Garny Date: Fri Sep 2 23:27:06 2016 +0200 General: removed the reference to the version of Qt and of the plugins we use (closes #1098). commit 95cc1d11caeab6d5412f0dcfa7cde0f8397c4fb1 Author: David Brooks Date: Fri Sep 2 21:23:09 2016 +0100 Work on OpenSSL plugin (#1101). commit ece968493d04d44d0b36f8649ff6bef154bbdc6c Merge: 2ba0c00e6 147e0d748 Author: David Brooks Date: Fri Sep 2 20:31:02 2016 +0100 Merge branch '\''master'\'' into pythondevel commit 235e223535a0f92a0db4014e78c5c71315dc8e00 Merge: b414a8755 147e0d748 Author: David Brooks Date: Fri Sep 2 20:30:42 2016 +0100 Merge branch '\''master'\'' into pythonplugin commit d722437e29897ff8b6aff01d303d55b792ada95c Author: Alan Garny Date: Fri Sep 2 21:23:40 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit cabd43628261f48069d3ea4025be7fbef27c5476 Author: Alan Garny Date: Fri Sep 2 21:17:30 2016 +0200 Plugins: some work on removing the reference to the version we are using (issue #1098). commit a2ddf261239a07cf29dab2c599817bdfafdfff85 Author: Alan Garny Date: Fri Sep 2 21:16:57 2016 +0200 Plugins: some work on removing the reference to the version we are using (issue #1098). commit e5241ee7c012c22e416248b3f4e23c9735623a68 Author: Alan Garny Date: Fri Sep 2 21:08:12 2016 +0200 Plugins: some work on removing the reference to the version we are using (issue #1098). commit 8eb26f907a0c578497d30a0aebf4e05b0df8a597 Author: Alan Garny Date: Fri Sep 2 21:04:38 2016 +0200 Plugins: some work on removing the reference to the version we are using (issue #1098). commit 4ad1b6c00dc877032e7694ca63df5b170761ba80 Author: Alan Garny Date: Fri Sep 2 13:44:41 2016 +0200 Plugins: some work on removing the reference to the version we are using (issue #1098). commit 46c548dcee428cd908af5e50327fba329d86c76f Author: Alan Garny Date: Fri Sep 2 11:37:25 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit f093cfef93b7d4d9fde2ebfec67a87ce082a1bae Merge: e139a1f33 147e0d748 Author: Alan Garny Date: Fri Sep 2 10:33:12 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 147e0d74806146dd6771b2ff3a47e4336276e051 Author: Alan Garny Date: Fri Sep 2 10:32:36 2016 +0200 File Browser window: slight improvement for OS X [ci skip]. commit e139a1f33c4be53938c8c92eee8267a20926da71 Merge: c37906192 e2f12d9cc Author: Alan Garny Date: Fri Sep 2 08:57:19 2016 +0200 Merge branch '\''master'\'' into issue1047. commit e2f12d9cce2e8c9eb58c575b490895f4e325c578 Author: Alan Garny Date: Fri Sep 2 08:56:52 2016 +0200 Some minor cleaning up. commit c379061926efc08d97db8d7da719c6dcdcf1353d Merge: a24de96f7 1c4d5dd3e Author: Alan Garny Date: Thu Sep 1 23:37:31 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 1c4d5dd3e571aaf031bfe1c8466538a9a5fb3110 Author: Alan Garny Date: Thu Sep 1 23:36:49 2016 +0200 Slight update to our downloads page (#1096 and #107) [ci skip]. commit cf74017cc7557edc717e3633cfedb79da2545b1b Author: Alan Garny Date: Thu Sep 1 23:30:30 2016 +0200 CellML editing views: fixed a small problem with the MathML viewer not always getting updated when no rendering options are selected (closes #1097). commit b7c3861fe91b913f8d45106ed73054e896e7fda6 Author: Alan Garny Date: Thu Sep 1 23:24:06 2016 +0200 CellML editing views: the MathML viewer now properly updates once again (closes #1096). Slight improvement to our solution. commit a24de96f7503fdd6b0bb930e74d94116f907174d Merge: dfd79ab0d 6605cfebb Author: Alan Garny Date: Thu Sep 1 22:08:57 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 6605cfebb0864dd629bd837de1f4e54ffebe6238 Author: Alan Garny Date: Thu Sep 1 22:05:30 2016 +0200 CellML editing views: the MathML viewer now properly updates once again (closes #1096). commit b050bdca827b2feb0cac8db8748e76eb10cc5189 Author: Alan Garny Date: Thu Sep 1 21:55:06 2016 +0200 Some minor cleaning up [ci skip]. commit dfd79ab0d38554bce97de0061e894782a8a26e58 Author: Alan Garny Date: Thu Sep 1 20:41:45 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit da21e1c75cb3f7a0d230925a05c61ca47a5c9909 Author: Alan Garny Date: Thu Sep 1 18:09:09 2016 +0200 Some minor cleaning up. commit 6b8dbdf64fea20470efa1e1f66c42e683cbbba03 Author: Alan Garny Date: Thu Sep 1 09:01:51 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit a1d93c699bc72c35f747651fd650115ad5a44c75 Merge: 896c5e75d 76cab60ea Author: Alan Garny Date: Wed Aug 31 23:16:01 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 76cab60ead23061615dfbf23b53af6dffe3fddeb Author: Alan Garny Date: Wed Aug 31 23:14:52 2016 +0200 Single Cell view: some additional work on fixing the style of the toolbar being sometimes wrong (#1082). Indeed, I completely overlooked the case of (re)loading a remote CellML 1.1 file, which means also some small work on our Raw CellML view. commit 896c5e75dd1592d058d8d18a81dc9bfae13b4887 Author: Alan Garny Date: Wed Aug 31 21:31:43 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit a8bca9911fc6e739f8bf1a77c2c816ea22be7ea4 Author: Alan Garny Date: Wed Aug 31 18:21:38 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit a4355c0705c2f798521106792db22f53300f2b72 Author: Alan Garny Date: Wed Aug 31 15:22:02 2016 +0200 Revert "Single Cell view: some work on fixing a small problem with a missing variable using a CellML 1.1 model (#1095)." This reverts commit a790c673d55509f32f1bbb32ae7e3756b28dfed1. commit a790c673d55509f32f1bbb32ae7e3756b28dfed1 Author: Alan Garny Date: Wed Aug 31 15:20:04 2016 +0200 Single Cell view: some work on fixing a small problem with a missing variable using a CellML 1.1 model (#1095). commit 5b8828391fcc90237ea17cb31118795799f65d72 Author: Alan Garny Date: Wed Aug 31 15:19:11 2016 +0200 Some minor cleaning up [ci skip]. commit df740674d4b01d9683be6eaedb4ef89c3cbf3114 Author: Alan Garny Date: Wed Aug 31 15:10:37 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit c3476669e73a97593b80e3936c7994d4aa639f21 Author: Alan Garny Date: Tue Aug 30 23:48:52 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 47849ee9f4997e09ecd9fc955dab53f5ee2428b4 Author: Alan Garny Date: Tue Aug 30 21:24:01 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 4104483b9fca8dc45c4fa50df83ee03bbeda5f66 Author: Alan Garny Date: Tue Aug 30 21:11:04 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 72031a6360d15a18f726fe03bdbbc998cdd12f62 Author: Alan Garny Date: Tue Aug 30 18:15:09 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit dddddb99211d343f4f006a8b04bcf4f97d9cc5fb Author: Alan Garny Date: Tue Aug 30 17:25:15 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 92d2a54191521908e8ca9098255aa5896671985c Author: Alan Garny Date: Tue Aug 30 16:01:03 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 381b1431f2b3fa370e54199f1fc28005de4e3370 Merge: 38496782d df903cc3f Author: Alan Garny Date: Tue Aug 30 14:57:46 2016 +0200 Merge branch '\''master'\'' into issue1047. commit df903cc3fd13e8b30eb22c20c7383d163f523b88 Author: Alan Garny Date: Tue Aug 30 14:56:47 2016 +0200 Some minor cleaning up [ci skip]. commit 38496782d94c20a301ac7a50cf05e72037ef8376 Author: Alan Garny Date: Tue Aug 30 11:31:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 63e13b6b4fb1489642c7c641d53df0ee0bc9b8a4 Author: Alan Garny Date: Tue Aug 30 11:18:07 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 6f171ccfca95f5eb5c6995f5f85ae28ab16be354 Author: Alan Garny Date: Tue Aug 30 11:07:24 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit e693352d34ed806e6c7ca3a34039f9953391638e Merge: a4e5bd61e 735a7b673 Author: Alan Garny Date: Mon Aug 29 17:37:22 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 735a7b673adea1b63d2091a936c7a37b005f9e83 Merge: 43877840e 9f9b9d647 Author: Alan Garny Date: Mon Aug 29 17:36:17 2016 +0200 SED-ML capable editing views: fixed a problem with the GUI flashing for a split second when reloading a SED-ML file that was previously viewed using the Single Cell view (closes #1093). commit 9f9b9d647bd272466a7320b557ec0e033b228c24 Author: Alan Garny Date: Mon Aug 29 17:12:26 2016 +0200 SED-ML capable editing views: fixed a small problem with the GUI flashing for a split second when reloading a SED-ML file that was previously viewed using the Single Cell view (#1093). commit 43877840e9ea1572dfd0c05960e073e2d4ec1ebb Author: Alan Garny Date: Mon Aug 29 17:02:50 2016 +0200 Some minor cleaning up [ci skip]. commit dd66ab3db54a2085b56ea148a2bd14334909e9e3 Author: Alan Garny Date: Mon Aug 29 16:38:28 2016 +0200 Some minor cleaning up [ci skip]. commit b6767b91e9439ba2d6713bf1533923a262b95a29 Author: Alan Garny Date: Mon Aug 29 11:56:23 2016 +0200 Slight update to the downloads page [ci skip]. commit a4e5bd61ef4fd461e76195386794907f7f01ed29 Merge: 343f17106 b890ee279 Author: Alan Garny Date: Mon Aug 29 00:02:51 2016 +0200 Merge branch '\''master'\'' into issue1047. commit b890ee2790802044832c8bcd402771775036f10a Merge: 4493b5fa9 f4e2cce75 Author: Alan Garny Date: Mon Aug 29 00:00:53 2016 +0200 Single Cell view: fixed the style of the toolbar being sometimes wrong (closes #1082). commit 4493b5fa983101a7b730df237853b6cfc5b3dcc9 Author: Alan Garny Date: Sun Aug 28 23:51:54 2016 +0200 Slight update to the downloads page [ci skip]. commit f4e2cce751930578979a4b6880e1dc8780e650f5 Author: Alan Garny Date: Sun Aug 28 23:06:44 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit 1c617bf5a7d0fff1fccb1ae5678d561f91e12a8d Author: Alan Garny Date: Sun Aug 28 21:06:03 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit e10a9fff4c5fff06fb6792d044dd3545ab0e307b Author: Alan Garny Date: Sun Aug 28 20:29:50 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit 07fc8fea870c3721855cef222ee4c9b2395005fe Author: Alan Garny Date: Sun Aug 28 18:48:42 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit 68ada0a0879f10e8b1befb7ce86737f032407fb9 Author: Alan Garny Date: Sun Aug 28 18:03:10 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit e3d810447a33ff498a0627fb646018bcb1db5e00 Merge: 008822d74 e4e00ae8d Author: Alan Garny Date: Sun Aug 28 15:05:18 2016 +0200 Merge branch '\''master'\'' into issue1082. commit 343f17106fad36575068255f1b3730326869b7c9 Merge: af80d86e0 e4e00ae8d Author: Alan Garny Date: Sun Aug 28 15:05:00 2016 +0200 Merge branch '\''master'\'' into issue1047. commit e4e00ae8d826d6d7de6ecbf1a855a2ea7b076715 Author: Alan Garny Date: Sun Aug 28 15:04:14 2016 +0200 Editing views: fixed a small problem with the reloading of a file resulting in an empty view (closes #1091). commit 2ba0c00e6b024a98ff4fd9f77f7658af17afad9c Author: David Brooks Date: Sun Aug 28 13:13:13 2016 +0100 Get Python and PythonQt building under Windows... commit 008822d74c2b55918440a063c5e7428ab692ca19 Merge: f2dc0ef63 6fd720afe Author: Alan Garny Date: Sun Aug 28 14:20:00 2016 +0200 Merge branch '\''master'\'' into issue1082. commit af80d86e0f167f481eea2c8c4afc9feba9fd5e95 Merge: 5c23423a8 6fd720afe Author: Alan Garny Date: Sun Aug 28 14:19:42 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 6fd720afeb30d7d491eecd2b3abe9557f077652b Author: Alan Garny Date: Sun Aug 28 14:18:53 2016 +0200 Raw SED-ML view: fixed a small problem with the editor'\''s list not being shown anymore (closes #1090). commit 7c1019704a37055f6231b7e33299ea7dea8c9628 Author: Alan Garny Date: Sun Aug 28 12:18:16 2016 +0200 Some minor cleaning up [ci skip]. commit f2dc0ef633b3bc5adba4a0b704d0ee09522609eb Merge: 487accf21 22e834aa9 Author: Alan Garny Date: Sat Aug 27 23:28:45 2016 +0200 Merge branch '\''master'\'' into issue1082. commit 5c23423a85eb6b0e5c525c47bbc7fe0d676641db Merge: 82158a791 22e834aa9 Author: Alan Garny Date: Sat Aug 27 23:28:28 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 22e834aa9d7173672ea76d342f646b1d1e6d891d Author: Alan Garny Date: Sat Aug 27 23:20:40 2016 +0200 Some minor cleaning up [ci skip]. commit 487accf216858868b0e84b79bd1327881769749b Author: Alan Garny Date: Sat Aug 27 21:46:43 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit 1eb9cd19ea2891bcddf43cf83bcf11c71639b730 Merge: 518366937 eb19d5d0f Author: Alan Garny Date: Sat Aug 27 15:12:04 2016 +0200 Merge branch '\''master'\'' into issue1082. commit 82158a7916dbebb8b7beaa491906cc358e620647 Merge: e8e3a381a eb19d5d0f Author: Alan Garny Date: Sat Aug 27 15:07:40 2016 +0200 Merge branch '\''master'\'' into issue1047. commit eb19d5d0f01c5f659d6811d052524d3fe677c8af Author: Alan Garny Date: Sat Aug 27 15:07:18 2016 +0200 Some minor cleaning up. Removed some unnecessary references to the OpenCOR namespace. commit b414a875528bacb5edc8699ba4c0a75755bdd60f Author: David Brooks Date: Fri Aug 26 15:14:21 2016 +0100 Always build Python (until we setup the download of a pre-built system) and exclude the built files from git (#1085). commit 804ead387853cc41cd7e0d79906bba868b29c800 Author: David Brooks Date: Fri Aug 26 15:08:35 2016 +0100 Initialise/finalise the Python library in its plugin (#1085). commit 761b5fbe30dc712a0ef3322baf16970a798c028c Author: David Brooks Date: Fri Aug 26 15:07:30 2016 +0100 Tidy up Python build process (#1085). commit b4d32fb11132157804672250d3703c279efce698 Author: David Brooks Date: Fri Aug 26 15:05:48 2016 +0100 Python build can'\''t use QT_KEYWORDS as the name `slots` is used in a header file (#1085). commit a3990e41544b068742be7fd61e3c89579cc25324 Author: David Brooks Date: Fri Aug 26 11:37:01 2016 +0100 Rework Python build to allow us to use `find_package()` to get configuration (#1085). commit 51836693718ea70d4aab94440c2bc4cf356aeadd Author: Alan Garny Date: Fri Aug 26 09:49:49 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong (#1082). commit e8e3a381ae88333e44a51fd82bd30f1d6688c07b Merge: f76682ec8 df25e03da Author: Alan Garny Date: Fri Aug 26 08:26:10 2016 +0200 Merge branch '\''master'\'' into issue1047. commit df25e03da8d7e81809bbf64a3270f1168e094426 Author: Alan Garny Date: Fri Aug 26 08:20:53 2016 +0200 Interfaces: removed `haveViewWidget()` from the View interface (it'\''s not used anymore). commit 97b44e230eff1d93e68ace91f6eaec5cc845a81b Author: Alan Garny Date: Fri Aug 26 08:07:42 2016 +0200 Travis CI: their OS X issue has been resolved, so re-enable OS X builds. commit 78501ed80a86190996c5bfee4dd9460acf49fdde Author: Alan Garny Date: Thu Aug 25 20:02:26 2016 +0200 Some minor cleaning up [ci skip]. commit 4d91280007b4aa7431e5d2c4f11ffe1b940a1db7 Author: Alan Garny Date: Thu Aug 25 19:46:29 2016 +0200 Some minor cleaning up [ci skip]. commit e1482ba168b32f93960a6a2b4ef2f79e2e8999ff Author: Alan Garny Date: Thu Aug 25 19:38:22 2016 +0200 Some minor cleaning up [ci skip]. commit cffadb04a358f2925335e31767803d4b54fd5111 Author: David Brooks Date: Thu Aug 25 16:38:32 2016 +0100 Commit e115539 means we no longer have to undefine `UNICODE` (#1085). commit ce2b807b743e3517380e8bc5704e017de3140d48 Author: David Brooks Date: Thu Aug 25 16:37:26 2016 +0100 Tidyup to Python plugin'\''s configuration (#1085). commit ffd7e0f645d8bbcd7b7b0639b70804e7a3dfae7e Author: David Brooks Date: Thu Aug 25 16:36:23 2016 +0100 Initial checkin of PythonQt plugin (#1086). commit f0424db8474a31f8c0f9a05067a6ddf33acad0da Merge: 38e009887 c4078ae14 Author: David Brooks Date: Thu Aug 25 16:06:38 2016 +0100 Merge branch '\''master'\'' into pythonplugin commit 38e00988796fc262f4d77d607941f2e393d312a7 Author: David Brooks Date: Thu Aug 25 16:02:29 2016 +0100 Initial version of Python plugin (#1085). commit c4078ae1467b4c55ef99c471c18b5552fcbdcf75 Author: Alan Garny Date: Thu Aug 25 16:18:59 2016 +0200 Some minor cleaning up [ci skip]. We don’t call QCoreApplication::processEvents(), so we don’t need this anymore (this used to be related to issue #1027). commit 4e2dfc70606fe77f92e0fdca55164f7d2fe464dc Author: Alan Garny Date: Thu Aug 25 16:14:16 2016 +0200 Some minor cleaning up [ci skip]. commit f76682ec8cc8707ad0027d522464e1ff1e081ea8 Merge: 0ec929e0e 392973584 Author: Alan Garny Date: Thu Aug 25 15:37:50 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 392973584316fad2d1e1364f31de379535f1cb19 Author: Alan Garny Date: Thu Aug 25 15:36:22 2016 +0200 Some minor cleaning up [ci skip]. commit 0ec929e0ed26de2fa686ce9624b1dc691fd8dfb1 Author: Alan Garny Date: Thu Aug 25 15:28:34 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit dfbeeca467bc8ed8d95d20dad5faec892f27b0ba Merge: da1e47e7b 144ed777a Author: Alan Garny Date: Thu Aug 25 14:58:53 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 144ed777abfc27d3de8550b38ac43a67a99702be Author: Alan Garny Date: Thu Aug 25 14:09:42 2016 +0200 Some minor cleaning up [ci skip]. commit 8f42b9473614eceb9163cc56ab97df1123504970 Author: Alan Garny Date: Thu Aug 25 13:37:23 2016 +0200 Some minor cleaning up [ci skip]. commit 9de062e2b6b5a2e940df3515696daece49d8cdd3 Author: Alan Garny Date: Thu Aug 25 13:27:26 2016 +0200 Some minor cleaning up [ci skip]. commit da1e47e7bbd9161c27caa5745336747bd7b5762d Merge: ed7d28c6c 11b0fb48e Author: Alan Garny Date: Thu Aug 25 12:47:31 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 11b0fb48e85a716ab8b2fa97c0b45415cd12e75d Merge: 980047490 aa69932c1 Author: Alan Garny Date: Thu Aug 25 12:46:12 2016 +0200 Fixed a crash that occurred after running and closing some SED-ML files (closes #1083). commit aa69932c15a7068fa287a473ec2a7a490f623739 Author: Alan Garny Date: Thu Aug 25 11:54:08 2016 +0200 Travis CI: temporarily disable OS X builds due to a huge backlog on their system. commit 980047490781bcb3be635f9c862774d1f01afdb3 Author: Alan Garny Date: Thu Aug 25 11:21:23 2016 +0200 Slight update to the downloads page [ci skip]. commit 75c35194d5e25c2a2aea5d7f44980809fb941f19 Author: Alan Garny Date: Thu Aug 25 11:12:26 2016 +0200 Single Cell view: some work on fixing a crash that occurs after running and closing a SED-ML file (#1083). commit e24042dc40f7e97c3dd9e3dc1539ceac86eaa41a Author: Alan Garny Date: Wed Aug 24 23:19:23 2016 +0200 Some minor cleaning up [ci skip]. commit ed7d28c6cf437e35427af324f9e2d2d793bfadce Merge: b1cb73409 7c86d208a Author: Alan Garny Date: Wed Aug 24 18:46:01 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 7c86d208a7ac684cbc9af1d62200ad162078e6f7 Author: Alan Garny Date: Wed Aug 24 18:45:42 2016 +0200 Improved our solution for issue #1044. commit b1cb7340911337674624de66012ef4f2cc405b8b Merge: 6521687aa 864e28ea8 Author: Alan Garny Date: Wed Aug 24 17:32:42 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 864e28ea85a5f62257c2f518a85f198973d93003 Author: Alan Garny Date: Wed Aug 24 17:32:28 2016 +0200 Some minor cleaning up [ci skip]. commit dd92cefa79c9a76beb1be7dcdd23f5fdcfff4f59 Author: Alan Garny Date: Wed Aug 24 16:28:34 2016 +0200 Some minor cleaning up [ci skip]. commit 6521687aa95dab206399c3807548bb453921bc56 Author: Alan Garny Date: Wed Aug 24 16:05:45 2016 +0200 Merge branch '\''master'\'' into issue1047. commit c663d72c1a32e91899895bbaf97998b069e1cea9 Author: Alan Garny Date: Wed Aug 24 16:04:55 2016 +0200 Slight update to the downloads page [ci skip]. commit dddbfcc730257ba1c8fcf6d7efbb9b10f721a043 Merge: 8da8518dd e95c94630 Author: Alan Garny Date: Wed Aug 24 15:48:07 2016 +0200 Merge branch '\''master'\'' into issue1047. commit e95c94630fdfa3ac07b47f95925b1e49e44d318a Author: Alan Garny Date: Wed Aug 24 15:47:55 2016 +0200 Some minor cleaning up [ci skip]. commit d223cdb7f41e6c4d801d45d7b54035ba6307146a Author: Alan Garny Date: Wed Aug 24 15:46:16 2016 +0200 Functional tests: added a local version of our SED-ML file [ci skip]. commit 9d90420ba094aef8f375c2cb4de623ced3cf9125 Author: Alan Garny Date: Wed Aug 24 15:45:49 2016 +0200 Some minor cleaning up [ci skip]. commit 8da8518dd382d9df5a7dbc22d115cfb1227b1bfd Author: Alan Garny Date: Wed Aug 24 15:08:05 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 65cec8f3d9915c399bc81c8436cfa083e00fd382 Author: Alan Garny Date: Wed Aug 24 14:55:22 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 0734d705099b4d0cc3f8dd0b1e389e583b4ced8a Merge: c16311005 e11553967 Author: Alan Garny Date: Wed Aug 24 13:54:13 2016 +0200 Merge branch '\''master'\'' into issue1047. commit e1155396788e5c29744570f8aa3a83ed0c35b700 Merge: 4db39a350 088591742 Author: Alan Garny Date: Wed Aug 24 13:53:22 2016 +0200 General: don'\''t define (_)UNICODE globally anymore (closes #1080). commit 0885917425f9607358213a4959a573b11fcd8dae Author: Alan Garny Date: Wed Aug 24 13:28:17 2016 +0200 General: some work on not defining UNICODE globally (#1080). commit 1d8c228586d396e1d1d53437a01a83b87ca11bc6 Author: Alan Garny Date: Wed Aug 24 10:24:55 2016 +0200 General: some work on not defining UNICODE globally (#1080). commit 327af0a1b677889328e49cceafcf8d09180c12f0 Author: Alan Garny Date: Wed Aug 24 10:08:45 2016 +0200 General: some work on not defining UNICODE globally (#1080). commit c16311005dc67b426765123d80ce49604f2ffd7c Author: Alan Garny Date: Wed Aug 24 10:07:47 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 53cde4d2e5b64b2ac5bd9e788e4f5f24bcf693a7 Author: Alan Garny Date: Wed Aug 24 09:45:02 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit e3330134aa604c41cdddc6909264e11b4b611fd0 Author: Alan Garny Date: Wed Aug 24 09:14:13 2016 +0200 General: some work on not defining UNICODE globally (#1080). commit 8520ad6100caf7b9f9f2b506882522602df2d22c Author: Alan Garny Date: Tue Aug 23 18:30:07 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 337480bc10366a6a258fda0ddf51c85939860b7d Author: Alan Garny Date: Tue Aug 23 17:30:09 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 8014be38349f423937dd199196d4a582ea701900 Author: Alan Garny Date: Tue Aug 23 17:23:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 34294a4f864efdf271753815beb6eb1e516a24b6 Author: Alan Garny Date: Tue Aug 23 17:20:13 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 556f0222955d468699457e1d56d61a45e104dc09 Author: Alan Garny Date: Tue Aug 23 15:40:40 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 1c53a26c41d2707143bb8abbfd75aecb8c92d5cb Author: Alan Garny Date: Tue Aug 23 15:37:03 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Note that for our downloads page, we had to ‘hard-code’ some colours. This is the case, for example, with the border colour for div.official and div.officialSection. Indeed, we would normally have used rgba(118, 146, 60, 0.39), but because those two divs have different background, the resulting border wasn’t quite of the same colour… commit 970114b9cfa59feb6831c7b24e653bce9835a823 Author: Alan Garny Date: Tue Aug 23 14:26:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). commit 1804a6a9364c762f690fb8b194cb05c390bc51df Merge: 5e6c8937c 4db39a350 Author: Alan Garny Date: Tue Aug 23 13:56:38 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 4db39a35081d24446f69024845409f152e366a12 Author: Alan Garny Date: Tue Aug 23 13:54:56 2016 +0200 Slight update to the downloads page [ci skip]. commit d7fdd9166c566a4b364acbc4d19c8e06a0c2dcd1 Merge: 555cf7882 065cc559e Author: Alan Garny Date: Tue Aug 23 13:52:30 2016 +0200 Data stores: fixed a small problem with the number of selected variables being wrongly tracked during an export (closes #1076). commit 065cc559e5449a76e4d2d3ca0084368dfb13bc68 Author: Alan Garny Date: Tue Aug 23 13:21:26 2016 +0200 Data store export: some work on fixing a small problem with the number of selected variables being wrongly tracked (#1076). commit 0533bc2bc485953971536b894845aeb49afe4dd1 Author: Alan Garny Date: Tue Aug 23 12:48:12 2016 +0200 Data store export: some work on fixing a small problem with the number of selected variables being wrongly tracked (#1076). commit 6f345ba1232954c7549fba38d9518794576153d0 Author: Alan Garny Date: Tue Aug 23 12:43:08 2016 +0200 Some minor cleaning up. commit 564479959f7af957bc9d53076acbaf970110516a Merge: 75fe35b4f 555cf7882 Author: David Brooks Date: Tue Aug 23 09:51:20 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 5e6c8937c4881f5d39e066889f863681bf39972e Merge: cf437638b 555cf7882 Author: Alan Garny Date: Tue Aug 23 10:29:43 2016 +0200 Merge branch '\''master'\'' into issue1047. commit 555cf7882292e48e13a3916f423d892c37213552 Author: Alan Garny Date: Tue Aug 23 10:28:43 2016 +0200 Slight update to the downloads page [ci skip]. commit c1286ee7bce621793b7daa103c46163bc15185dc Merge: 7e72e248d d5312de1b Author: Alan Garny Date: Tue Aug 23 10:25:07 2016 +0200 General: now use specific text interaction flags for a/n information/question/warning/critical/about message box (closes #1077). commit d5312de1bd599349f152519a7f06aedb7fac511e Author: Alan Garny Date: Tue Aug 23 09:55:54 2016 +0200 Sample plugins documentation: updated some line numbers. commit 718482b8fa54f9b5ad96a530b27a7b83e3891dd7 Author: Alan Garny Date: Tue Aug 23 09:11:13 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 7d4113f2a9869742e4293568482f8474e218b00d Author: Alan Garny Date: Tue Aug 23 09:00:05 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 6d361cd9166dbd3696ec28e74b757d95521c224b Author: Alan Garny Date: Tue Aug 23 08:44:29 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 1f7593d3b1518270179f9c925d7d2819f0ba621b Author: Alan Garny Date: Mon Aug 22 18:43:15 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 6dbb2e17888f560e07c512da3f81b06749904849 Author: Alan Garny Date: Mon Aug 22 18:18:20 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 4c7fc6df0ed5a1fd885f4a74feafc416afa96c5f Author: Alan Garny Date: Mon Aug 22 18:00:58 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit 2996f4d38f947fdf1e29e80ea503b1b94ff69e08 Author: Alan Garny Date: Mon Aug 22 18:00:37 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit e92f701e423274deb2858bfaf013547cea797072 Author: Alan Garny Date: Mon Aug 22 17:39:45 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box (#1077). commit cf437638be5605455efa959cb2657437af04e9bb Author: Alan Garny Date: Mon Aug 22 14:41:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Fixes a minor issue with the what’s new anchor to use for a particular version of OpenCOR. commit 75fe35b4f0574343b6310f32fb1cd815b937b694 Merge: 2fd5682f8 b8ba0d0f1 Author: David Brooks Date: Mon Aug 22 13:32:01 2016 +0100 Merge branch '\''selectmessages'\'' into pmrworkspace commit 2fd5682f82051c35ff225c8d7b3a3e5b53272f49 Merge: 63456adcd 7e72e248d Author: David Brooks Date: Mon Aug 22 13:30:28 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit b8ba0d0f1c0cb2d8b713d3d868929fe001ea423a Merge: ffbebdeca 7e72e248d Author: David Brooks Date: Mon Aug 22 13:29:36 2016 +0100 Merge branch '\''master'\'' into selectmessages commit ffbebdeca0ec0b7213fc6e2a2be2f31ce15473d5 Author: David Brooks Date: Mon Aug 22 13:28:12 2016 +0100 General: allow user to select text in message boxes. commit 63456adcddac23fdad96eb6fe6662203ea3e5b18 Author: David Brooks Date: Mon Aug 22 13:23:45 2016 +0100 PMR Workspace window: provide clickable links to workspace in PMR (#1066). commit 774e4b296d8d8c13bdf7228de8e3e27e8cda79aa Author: Alan Garny Date: Mon Aug 22 14:04:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Slight improvements (to the size) of our other images (using https://pixlr.com/editor/). commit 4ed8fc6585acb1fa4fba3c26ab49a4788e8d7076 Author: Alan Garny Date: Mon Aug 22 13:50:21 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Updated our Windows and OS X logos. commit 2fe91f0a168f2bb8868dba78838bc746fe9feaf6 Author: Alan Garny Date: Mon Aug 22 11:26:36 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Slight update to our README.md file. commit 1fa0d1dd0502cbc00c6a735d0aee588ad79055f5 Author: Alan Garny Date: Mon Aug 22 10:25:18 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release (#1047). Some minor cleaning up. commit 7e72e248d721ea4261e75bb6462e47262344d999 Author: Alan Garny Date: Sun Aug 21 19:11:12 2016 +0200 Single Cell view: the reloading of a SED-ML file only results in the GUI being temporarily disabled when its corresponding view is visible (closes #1074). commit 9948641b066e808297919a5b72a6b713efc37921 Author: Alan Garny Date: Sun Aug 21 19:09:49 2016 +0200 Some minor cleaning up [ci skip]. commit 9ee45c4491540b3c2241c004eed879a128108916 Author: Alan Garny Date: Sun Aug 21 17:38:53 2016 +0200 File handling: fixed a small problem with a changed file/dependency resulting in OpenCOR asking to reload it / its owner twice in a row (closes #1073). Hmm, commit 42cbfeb works fine on OS X, but not on Windows, so we had to come up with another solution… commit e6742176efd25386037448854f5b50445a8a834b Author: Alan Garny Date: Sun Aug 21 17:26:00 2016 +0200 Some minor cleaning up [ci skip]. commit 42cbfeb1d944d97e9acedb747878f9444d26b72f Author: Alan Garny Date: Sun Aug 21 15:47:55 2016 +0200 File handling: fixed a small problem with a changed file/dependency resulting in OpenCOR asking to reload it / its owner twice in a row (closes #1073). commit b88af0dab10cb01b561b45d163ce490b9db5b468 Author: Alan Garny Date: Fri Aug 19 20:07:44 2016 +0200 Graph panel widget: improved the plotting of data (related to issue #671). I thought I was done with issue #671, but I got a black plot when trying to plot two successive (in the list of parameters) parameters against the VOI. Upon analysis, the black plot was due to GraphPanelPlotWidget::drawGraphFrom() replotting itself and reallowing direct painting. However, the replotting wasn’t done yet and because direct painting was reallowed, the next call to GraphPanelPlotWidget::drawGraphFrom() (for the second model parameter) did a direct painting. Hence, the black plot. The idea was therefore not reallowing direct painting straightaway, but only after the replotting has occurred. While at it, we also prevent successive calls to replot() in GraphPanelPlotWidget::drawGraphFrom(). commit ced88a15921042b7d0a63d83c9b12b02a943f474 Author: Alan Garny Date: Fri Aug 19 18:04:29 2016 +0200 Some minor cleaning up following our work on issue #1071 [ci skip]. commit 385e2e4fbea7d4a12287bc53c6fce1350f3cf04c Author: Alan Garny Date: Fri Aug 19 17:47:12 2016 +0200 Some minor cleaning up [ci skip]. commit 808bdfd3b8dae8b412753db6bbb863f8ab52211c Merge: 3a50cb2bb 5d99fd295 Author: Alan Garny Date: Fri Aug 19 16:41:24 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation (closes #1071). commit 5d99fd29599d6f2c4ed7009946f3830e33f28bd7 Author: Alan Garny Date: Fri Aug 19 16:18:50 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation (#1071). commit 9ca6ca920457b7ca94c9dfd9dacaa67c434868a3 Author: Alan Garny Date: Fri Aug 19 16:11:57 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation (#1071). commit 5ddca16dc6e6e530cf0bea4634137ede74dcb225 Author: Alan Garny Date: Fri Aug 19 16:08:01 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation (#1071). commit a2ec59d2a7319ffda155d959327713a91895e3ef Author: Alan Garny Date: Fri Aug 19 15:57:55 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation (#1071). commit 37aad8147b59cd1841bc34380b7f76fcf434024a Author: Alan Garny Date: Fri Aug 19 15:53:54 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage data in the case of an unfinished simulation (#1071). commit 3a50cb2bb5bc4627600a80b04f0818252a00260b Author: Alan Garny Date: Thu Aug 18 11:40:58 2016 +0200 Travis CI: '\''explain'\'' why we don'\''t use the prebuilt version of QScintilla on Linux. commit 3e07b5bc917f9f7ca9827afade6f789e3d777177 Author: Alan Garny Date: Thu Aug 18 09:13:42 2016 +0200 Travis CI: allow builds from the travis-ci branch. commit be98e3daf304d200d9d6c755c249088f427c4846 Author: Alan Garny Date: Wed Aug 17 19:11:43 2016 +0200 Travis CI: done determining why things were not working on Linux anymore. On Linux, to link CellMLTextView_conversiontests and CellMLTextView_parsingtests results in an error about `__cxa_throw_bad_array_new_length@Qt_5` not being defined in libQScintilla.so. It’s not clear yet why it is the case since everything works fine locally (and when deployed). However, to build QScintilla ourselves (rather than using its prebuilt version) ‘solves’ the problem, so… commit f1d96ff7674604868b4c95bb68d2013d79358d9b Author: Alan Garny Date: Wed Aug 17 18:48:20 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 550fe497cd441ddc493e9103c1dd5d3d552184db Author: Alan Garny Date: Wed Aug 17 18:01:46 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 1495f57d818818999a98db593b0fe382aacce6d6 Author: Alan Garny Date: Wed Aug 17 17:12:53 2016 +0200 Some minor cleaning up [ci skip]. Oops, had accidentally removed the x bits. commit 606f60e78edd04a1d2a7037189a0faa921b20247 Author: Alan Garny Date: Wed Aug 17 17:11:08 2016 +0200 Some minor cleaning up [ci skip]. Oops, had accidentally removed the x bits. commit 6a42ade53b771a31cc3c35c0dfa0c68fdd94d509 Author: Alan Garny Date: Wed Aug 17 16:45:39 2016 +0200 Some minor cleaning up. commit 6e55d4a40888b7fcb066341f63fe0657c56215f0 Author: Alan Garny Date: Wed Aug 17 15:21:15 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 3590ac08a03e511f775cad9bd458a5ed4a0dc83f Author: Alan Garny Date: Wed Aug 17 13:50:43 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 3374c5d9940ec71ac45c374e039894f422e0c57c Author: Alan Garny Date: Wed Aug 17 13:44:52 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 14646946f23c3a9e04c15a5b3f15da930dfaa964 Author: Alan Garny Date: Wed Aug 17 13:13:42 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit cf30da0265fe301d4cb4540281ef76b9a2e0fbd5 Merge: f57ce9610 27532519b Author: Alan Garny Date: Wed Aug 17 11:46:07 2016 +0200 QScintilla: upgraded to version 2.9.3 (closes #1067). commit 27532519bc8969fae73fe8246ebc8c91f1dc43de Author: Alan Garny Date: Wed Aug 17 11:44:24 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 (#1067). commit c40415ebd1bb54b21eb9f3535df6afcf9d112e01 Author: Alan Garny Date: Wed Aug 17 11:37:58 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 (#1067). commit f64fe050fd770257401354d87aa9ef17d83ce111 Author: Alan Garny Date: Wed Aug 17 11:28:27 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 (#1067). commit 70a9846ecb9b553187361d7940d464e7a54a1c85 Author: Alan Garny Date: Wed Aug 17 11:27:07 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 (#1067). commit f57ce96103f7e331e8ae14c6848ca34e34c5381b Author: Alan Garny Date: Wed Aug 17 10:25:36 2016 +0200 Oxygen library: upgraded to version 5.24.0. commit 5553551e417cb315464fa139fe77df253f1d6cd7 Author: Alan Garny Date: Wed Aug 17 10:24:49 2016 +0200 Developer documentation: some minor cleaning up [ci skip]. commit 56077eab0392bae5344b41fe697b4ddc1f117202 Author: David Brooks Date: Sun Aug 14 14:07:30 2016 +0100 Use `opencorActive()` from core GUI utilities (#1056). commit bcde738783e153de3ec50ffc844cf2a1e2de2f31 Merge: d93fe322c 474bb0aca Author: David Brooks Date: Sun Aug 14 14:01:40 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 474bb0aca7419ada6e011a19eb1a2a19da0df9ea Merge: 5eb95565d e94b29574 Author: David Brooks Date: Sun Aug 14 13:58:51 2016 +0100 Merge pull request #1064 from dbrnz/opencoractive Refactoring: move `opencorActive()` to core GUI utilities. commit e94b295741486df4cd1d3e30b917fd0969da8074 Author: David Brooks Date: Sun Aug 14 13:54:28 2016 +0100 Refactoring: `opencorActive()` will also be used by workspaces'\'' widget, so move it to core GUI utilities. commit d93fe322c785c15346f355db3a3ac67dfd0fba27 Author: David Brooks Date: Sun Aug 14 13:46:26 2016 +0100 Set the active directory when a workspace is set current (#969). commit 466f5f276093262281939ef55a8581988d381ee7 Author: David Brooks Date: Sun Aug 14 12:50:15 2016 +0100 Allow for a missing FETCH_HEAD when attempting a git merge (#1058). commit 5eb95565dc3775df09f89ebf0845d7e85b2a4653 Author: Alan Garny Date: Sat Aug 13 20:22:37 2016 +0200 libgit2: fixed commit 9ca3103. commit 8cd6417fe7c79210f959367c43ae6765f36ddb16 Author: David Brooks Date: Sat Aug 13 15:39:53 2016 +0100 Small code tidy (#969). commit 1ddea2e90c3dc4bb686dfcbe67fddad84d67764d Author: David Brooks Date: Sat Aug 13 15:39:08 2016 +0100 Show details of conflicting lines when there is merge conflict (#1058). commit ef98b5b5172a7548c49dd4196df6708419588f95 Author: David Brooks Date: Sat Aug 13 15:37:53 2016 +0100 Git fast-forward merge working (#1058). commit c3a23c485ea6f11c9ff05e890dfbd2dbf9ea2617 Author: David Brooks Date: Sat Aug 13 15:37:11 2016 +0100 Code tidying up (#1058). * Improve error messages. * Add TODO comments. * Always clear updated/conflict list before a merge. commit 18f86b990eaeb9ea42a618c1c114b26e41e4775f Author: David Brooks Date: Sat Aug 13 15:27:51 2016 +0100 Workspaces were being (re-)opened instead of being checked to see if they had been opened (#1058). commit 9ca31039728abe27dcbe340676302dc213f2fc92 Author: Alan Garny Date: Sat Aug 13 11:05:00 2016 +0200 libgit2: slight cleaning up [ci skip]. commit a4d57a40b87b74f919343199ef67b3dcd4c3695d Author: David Brooks Date: Fri Aug 12 17:10:57 2016 +0100 We had lost our icons for logging on/off PMR (#1058). commit 4e69229e188a8a25164eecfeed66247b7dce027d Merge: bba5b1ff2 7ed1d0601 Author: David Brooks Date: Fri Aug 12 16:38:45 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 7ed1d060188b00d78776fb702f3df7e0edf29647 Merge: cbd534c94 e8e89de41 Author: David Brooks Date: Fri Aug 12 16:36:29 2016 +0100 Merge pull request #1063 from dbrnz/libgitbuild libgit2: find OpenSSL include files when they are in non-standard locations commit e8e89de41c385ed58eb3a1d0573a82e6118bb47f Author: David Brooks Date: Fri Aug 12 16:31:12 2016 +0100 libgit2: find OpenSSL include files when they are in non-standard locations. commit bba5b1ff27293acebc249f6ff357dbec93a64e02 Merge: 0b4af6692 cbd534c94 Author: David Brooks Date: Fri Aug 12 16:25:28 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 0b4af6692c17e9aff9256695867b801a249ed078 Author: David Brooks Date: Fri Aug 12 16:17:43 2016 +0100 Don'\''t try to refresh an unopened workspace (#969) commit 9028bb3c9e22de9e205b66f91ce59e5b0283417e Author: David Brooks Date: Fri Aug 12 16:17:03 2016 +0100 Code tidy up (#969) * Set the workspace'\''s description and owner when it'\''s constructed. * Allow informative messages about workspace operations to be emitted. * Show git errors in the debugging log. commit 4708484aba341e0b83926dbd368d74bd0ff97a9f Author: David Brooks Date: Fri Aug 12 16:08:53 2016 +0100 Implement PMR workspace synchronisation (#1058) commit e70d101ac0cfd37175c337567290f7a522290a01 Author: David Brooks Date: Fri Aug 12 16:00:56 2016 +0100 Improve expanding/collapsing of workspace tree (#969) commit cbd534c94a3e4662c55fcb93a8f16cb73d7300de Author: Alan Garny Date: Thu Aug 11 18:50:28 2016 +0200 Some minor cleaning up [ci skip]. commit dca27e72a296b53e4bf844a67f9214cf5580c6f9 Author: David Brooks Date: Mon Aug 8 15:54:30 2016 +0100 Show the files that will be committed (#1061) commit 8e02deff6be56a701d71c3e122f99cb5c0eeba27 Author: David Brooks Date: Mon Aug 8 15:52:12 2016 +0100 Tidy up code (#969) Seperate out opening a workspace'\''s git repository and getting the repository'\''s status. commit da1ff66fbf92116a66b986b15882ec190bab0f15 Author: David Brooks Date: Mon Aug 8 13:40:04 2016 +0100 Periodically refresh the status of a workspace (#1056) We also only have one workspace open at a time, the "current" one. commit 204ab1ba1166103976164452153065a73f158380 Author: David Brooks Date: Mon Aug 8 13:29:16 2016 +0100 Tidy up code (#969) commit a4184299ec5c51c69d19b8ab25da2770563b993a Author: David Brooks Date: Mon Aug 8 13:24:35 2016 +0100 Simplify code to "Show containing folder" (#1060) Update (unfinished) translations. commit f88bd75930e242b148cef16798f7a4f1b1d3c697 Author: David Brooks Date: Fri Aug 5 18:52:39 2016 +0100 Simplify code to "Show containing folder" (#1060) commit a1da1529d634515010608a73b24d3d69dacbcf92 Author: David Brooks Date: Fri Aug 5 18:40:39 2016 +0100 Don'\''t crash after cloning a workspace (#1055). Open a new workspace after cloning it; check for a null root node when generating HTML. commit 9a701f3ad058df534835774912c53f2419ba171e Author: David Brooks Date: Wed Aug 3 16:12:01 2016 +0100 Export `PmrWorkspaceFileNode` for Windows'\'' DLLs (#969) commit e7ce70af0767666204e62be69ada29b0234a0f50 Author: David Brooks Date: Wed Aug 3 15:34:24 2016 +0100 Show deleted files in workspace tree (#969) We use the file/directory tree returned by `git_status_list_new()` using appropriate options to get all files in the repository. commit 8c10fb02f48ce8b4ed288f21f3762017fa0b363c Author: David Brooks Date: Tue Aug 2 11:44:51 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 3180034cb850567442462228987219bafd039729 Author: Alan Garny Date: Mon Aug 1 18:39:23 2016 +0200 MathML viewer: fixed a small problem with some numbers being rendered with fewer decimal digits than they actually have (closes #1054). commit 96c10e9f9ea2c203ced1396439dc44261c635dff Author: Alan Garny Date: Mon Aug 1 17:33:34 2016 +0200 Text-based editing views: fixed a small problem with no line/column information being shown anymore (closes #1053). commit 9f80b61fdb615afe7f0fbf9140213dee823447fc Author: Alan Garny Date: Mon Aug 1 16:52:05 2016 +0200 Text-based editing views: fixed a small problem with no line/column information being shown anymore (closes #1053). commit 6d021fad4d1890b86fc9cfe9b13c1f1ada83bbdc Author: Alan Garny Date: Mon Aug 1 12:09:41 2016 +0200 Raw CellML and CellML Text views: slight improvement to our use of the MathML viewer [ci skip]. commit 38d450c377df620c12ce1ed9dc45acddfea557a5 Author: Alan Garny Date: Sat Jul 30 18:26:07 2016 +0200 Reverting to a snapshot version of OpenCOR [ci skip]. commit 7895d311c25d83dd82f0767816ae62aec9e274ad Author: Alan Garny Date: Sat Jul 30 11:32:33 2016 +0200 Some minor refactoring. Overloaded our Core::[read|write]FileContentsFrom[File|Url]() functions so that we can now use them with either a QByteArray or a QString. Also changed the signature of our Core::validXml(), FileManager::isDifferent(), FileManager::newFile(), FileManager::create() and File::isDifferent() functions so that they now also uses QByteArray rather than QString. Finally, replaced QByteArray with QString whenever possible. commit a18f80d42b94a68e6b425ea17967dd3e6d972af6 Author: Alan Garny Date: Fri Jul 29 14:32:35 2016 +0200 General: fixed a small problem with the reloading of a modified file potentially resulting in an empty view (closes #1052). commit 3afbc0859ed26399c4058c491a5479e1f12b723b Merge: ea00b2b01 c2e46710a Author: Alan Garny Date: Fri Jul 29 13:15:02 2016 +0200 Merge pull request #1051 from opencor/issue1050 commit c2e46710ad08e2e784b439cfbd0fb64bef0a4334 Author: Alan Garny Date: Fri Jul 29 12:38:05 2016 +0200 Some minor cleaning up. commit d7815cc89972ca928ade75bca0c586d01e7bbce1 Author: Alan Garny Date: Fri Jul 29 11:55:56 2016 +0200 Some minor cleaning up. commit 217c8f69fba517da263a84b1ed87c8f0ef8b3041 Author: Alan Garny Date: Fri Jul 29 11:43:23 2016 +0200 Editing views: some work on fixing a small problem with the incorrect tracking of the modified state of a file (#1050). commit 7e1c2d57a9db6b729c7e518adc66bc4fa7f1a829 Author: Alan Garny Date: Fri Jul 29 11:21:30 2016 +0200 Editing views: some work on fixing a small problem with the incorrect tracking of the modified state of a file (#1050). commit ea00b2b01fc56a578272242ef566dcfcc27cbc58 Author: Alan Garny Date: Thu Jul 28 18:47:03 2016 +0200 Slight update to our downloads page [ci skip]. I had completed forgot to copy the 2016-07-26 log to the previous snapshots page. commit 26b0f87ee1f362a2e581f83da11cac2b856e809b Author: Alan Garny Date: Thu Jul 28 16:30:30 2016 +0200 Some minor cleaning up [ci skip]. commit 9d5aba45cfde4f0148d91920c80f84a50c14c63c Author: Alan Garny Date: Thu Jul 28 15:45:24 2016 +0200 Some minor cleaning up [ci skip]. commit 47bbefcdf22babe1c91ad97a24cee87005a957f1 Author: Alan Garny Date: Thu Jul 28 15:39:01 2016 +0200 Central widget: slight improvements to the way we handle changes to a file [ci skip]. commit b915d1ba3372f201a1db4a0100e466969ba6286b Author: Alan Garny Date: Thu Jul 28 13:19:32 2016 +0200 Some minor cleaning up [ci skip]. commit e2950f4aab3338b7860eba7b292eeecbd90794e8 Author: Alan Garny Date: Thu Jul 28 11:27:33 2016 +0200 Revert "CellML Text view: fixed a small problem resulting in the incorrect tracking of the modified state of a file (closes #1049)." This reverts commit 485e7ab2dcfb31505459505943aa83438e4066ae. Indeed, this is the wrong way to address the problem, not to mention that the problem is actually more general (see issue #1050). commit 485e7ab2dcfb31505459505943aa83438e4066ae Author: Alan Garny Date: Wed Jul 27 18:08:15 2016 +0200 CellML Text view: fixed a small problem resulting in the incorrect tracking of the modified state of a file (closes #1049). commit 54cbc3cee74629b189de5d57c1133eddeb55a2a6 Author: Alan Garny Date: Wed Jul 27 17:29:55 2016 +0200 Slight improvement for issue #1048 (file manager: only check files when OpenCOR is really active). Also fixed a small problem with our Core general tests. commit 2558bb966ac031cb166a8056a47a69e03df63ade Author: Alan Garny Date: Wed Jul 27 16:48:11 2016 +0200 File manager: only check files when OpenCOR is really active (closes #1048). commit af83281cee4a352975413aab7053a665003af07e Author: Alan Garny Date: Wed Jul 27 14:35:23 2016 +0200 Starting to get ready for version 0.5 [ci skip]. commit 6a1d2aa9ab6ee0df392891f14a22bd21698e99a9 Author: Alan Garny Date: Tue Jul 26 14:58:46 2016 +0200 New snapshot. commit ae954c2a51d567acd94f4fc21f26e16149342fe3 Author: Alan Garny Date: Tue Jul 26 14:57:33 2016 +0200 CMake: make sure that we can properly find NSIS (when available). Indeed, up to CMake 3.5.x, CMake was only avaialble as a 32-bit application on Windows. However, starting with CMake 3.6.x, CMake is now available both as a 32-bit and 64-bit application. Now, depending on the version you use, the value of `$ENV{PROGRAMFILES}` will return either `C:\Program Files (x86)` (when using the 32-bit version of CMake) or `C:\Program Files` (when using the 64-bit version of CMake), while `$ENV{PROGRAMW6432}` will always return `C:\Program Files` in both cases. There is therefore something funny going on with the 64-bit version of CMake. So, to be on the safe side, we '\''manually'\'' look for the possible location of NSIS. commit 47eeac9e197a774ea850d9dc678011cf4bcd4d2f Author: Alan Garny Date: Tue Jul 26 14:30:03 2016 +0200 Revert "New snapshot." This reverts commit da8b58c169edfcbb74e0126f0790d30551ec58c7. commit da8b58c169edfcbb74e0126f0790d30551ec58c7 Author: Alan Garny Date: Tue Jul 26 11:06:07 2016 +0200 New snapshot. commit 8c0bee9783c6915247eba08617fe84c39f9478db Merge: 178508343 1f9247a9c Author: Alan Garny Date: Mon Jul 25 18:46:44 2016 +0200 BioSignalML: made the code and GUI look more like the rest of OpenCOR (closes #856). commit 1785083435291d55b4a8f26fa77988279167f14e Author: Alan Garny Date: Mon Jul 25 18:02:37 2016 +0200 Slight updates to our what is new page [ci skip]. commit ed3b7e3534aba3fdd66d0864dace23127cb99a8e Author: Alan Garny Date: Mon Jul 25 18:02:04 2016 +0200 Slight updates to our what is new and downloads pages [ci skip]. commit 1f9247a9c7311747b3c945749fc4ecd5f44a0a30 Author: Alan Garny Date: Mon Jul 25 17:34:06 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit 1a0ea68c497e6f0c5bdba1c48f01520791fe04d1 Author: Alan Garny Date: Mon Jul 25 17:07:34 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit 3800c80742088746b11e42c2852522dc75ef03cb Author: Alan Garny Date: Mon Jul 25 16:58:05 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit a2d65b71eb71c49b3336856e515a22feb21b8360 Author: Alan Garny Date: Mon Jul 25 16:46:01 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit 759f2a9bc05cbeece7517bfab599d17ad2d4f848 Author: Alan Garny Date: Mon Jul 25 16:12:34 2016 +0200 Some minor cleaning up [ci skip]. commit d8e7817609bce1a6c22e1a4bfea25782075319ef Author: Alan Garny Date: Mon Jul 25 14:38:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit c21c2137eddfce1c618a88b7b56ca23650bacd01 Merge: f3e361ba7 8aa9077f9 Author: Alan Garny Date: Mon Jul 25 14:37:05 2016 +0200 Merge branch '\''master'\'' into issue856. commit 8aa9077f98b8cf7024a027104e0c409e201c1be4 Author: Alan Garny Date: Mon Jul 25 14:36:54 2016 +0200 Some minor cleaning up [ci skip]. commit f3e361ba78b7ecbcbd55cac7d294281d284c18ba Merge: 9f62ac730 318a33516 Author: Alan Garny Date: Mon Jul 25 13:28:42 2016 +0200 Merge branch '\''master'\'' into issue856. commit 318a33516d849d64a49e3e0bff69ee995b5df8b0 Author: Alan Garny Date: Mon Jul 25 13:28:31 2016 +0200 Some minor cleaning up. commit 9f62ac730b62935b52095235bb6573f6bbebf13c Author: Alan Garny Date: Mon Jul 25 12:57:28 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856). commit 3fdc2256b530ee408d45d80db6d8c3d411649349 Author: Alan Garny Date: Mon Jul 25 11:01:05 2016 +0200 Some minor cleaning up [ci skip]. commit 67a9bfddd9e061ade7a3499c46846298f6b8b20f Author: Alan Garny Date: Mon Jul 25 10:27:36 2016 +0200 CSV data store: ask for the data to be exported and then for the file name (rather than the other way round). commit 485297f7ca790d005c39b813fbefb5e1f7cda0d0 Author: Alan Garny Date: Sun Jul 24 14:30:16 2016 +0200 Removed our qSameStringLists() method since QTBUG-47948 has now been fixed (see https://bugreports.qt.io/browse/QTBUG-47948 and https://codereview.qt-project.org/#/c/153440/). commit b66ed336d692047ae7b5a701d6b1b23a28ce16f0 Author: Alan Garny Date: Sun Jul 24 14:15:21 2016 +0200 Some cleaning up to respect our coding style. commit 8f14aaa044fb185f3150b07e17098bf6da3b1027 Author: Alan Garny Date: Sun Jul 24 11:22:10 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 8e0082117228da5508cd37c747178cc8d5407945 Merge: bc337e26a e0dc083bc Author: Alan Garny Date: Sat Jul 23 12:18:26 2016 +0200 Data store exporters: now allow the selection of model parameters (closes #1008). commit e0dc083bcbbb342899046c93baa6d86b0d0dfe79 Author: Alan Garny Date: Sat Jul 23 11:53:34 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 5b753141518b070cb07ba100895eabe606fe142a Author: Alan Garny Date: Sat Jul 23 11:04:08 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 54d2ab5e788a756725f1d0432f79c666347abb29 Author: Alan Garny Date: Sat Jul 23 10:53:24 2016 +0200 Some minor cleaning up [ci skip]. commit f551f30eefd84f6698f2b29eaad5a306680dcab0 Author: Alan Garny Date: Fri Jul 22 18:35:42 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit c61769fc97fbe946e2a679ee14a9daa70545db04 Author: Alan Garny Date: Fri Jul 22 18:29:10 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 73d6796cca8ad7c482110d9a21162561e3e8e6b4 Author: Alan Garny Date: Fri Jul 22 18:26:02 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 5058b144845f7544297681bf61c1d28aa446a0ec Author: Alan Garny Date: Fri Jul 22 18:10:52 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 6979781256aaac63938772c0ab1871adff5f9ba9 Author: Alan Garny Date: Fri Jul 22 18:04:32 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit e58b37db7f0eb4bf20c67c90a33138cd8fc5b63b Author: Alan Garny Date: Fri Jul 22 18:03:40 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit ba6b3856ba64bf0548056e2bfe4131973a4b7c48 Author: Alan Garny Date: Fri Jul 22 18:01:31 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 8cf7df7518c5e445de069cd3e47eaf3a6c1eda3c Author: Alan Garny Date: Fri Jul 22 17:51:52 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 273ef4cb45b0e3afd42f01f2380b8ce93536f47c Author: Alan Garny Date: Fri Jul 22 17:12:23 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 66d188b5db2a5e9509b6cec55af119a771988c66 Merge: ae8fbbd06 bc337e26a Author: Alan Garny Date: Fri Jul 22 16:51:27 2016 +0200 Merge branch '\''master'\'' into issue1008. commit bc337e26a91bf49bfcf5014e138c60e75ad823b4 Author: Alan Garny Date: Fri Jul 22 16:50:25 2016 +0200 Single Cell view: fixed a small problem with OpenCOR crashing upon closing (closes #1044). commit 6bf3c56f79c3b4e0fa1124e81c4e904d29567f99 Author: Alan Garny Date: Fri Jul 22 15:26:15 2016 +0200 Some minor cleaning up [ci skip]. commit ae8fbbd06ac8eb3fb677c9873e661d405dde954a Author: Alan Garny Date: Fri Jul 22 15:06:28 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 75a6413c430ca7ffcef424f15b2a7d7618989abf Author: Alan Garny Date: Fri Jul 22 14:52:28 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 0b28a9e767e28858901ae79934601ea03d696139 Author: Alan Garny Date: Fri Jul 22 14:01:28 2016 +0200 Some minor cleaning up [ci skip]. commit 4307ec654526071b2bb86a3bb60637df82807ba3 Author: Alan Garny Date: Fri Jul 22 14:00:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 6967e6cb246a651723248648162449e9f28f8878 Merge: e5bad1f15 a8f489f22 Author: Alan Garny Date: Fri Jul 22 13:47:41 2016 +0200 Merge branch '\''master'\'' into issue1008. commit a8f489f228b9fe1e072dab5c4e2b340e1896cdd7 Author: Alan Garny Date: Fri Jul 22 13:45:04 2016 +0200 Some minor cleaning up. commit e5bad1f158157eb2a93517651d8a1536a576163c Author: Alan Garny Date: Fri Jul 22 13:32:25 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 67fd8278b3d4dbc5203061df73701602d2e78295 Merge: 650a6e756 5bb9f00cb Author: Alan Garny Date: Fri Jul 22 13:26:03 2016 +0200 Merge branch '\''master'\'' into issue1008. commit 5bb9f00cb07245a199be711d3b8a27b20ac85c70 Author: Alan Garny Date: Fri Jul 22 13:25:22 2016 +0200 Some minor cleaning up. commit b1e47521359c8acef5cab42af6e4b0767568b542 Author: Alan Garny Date: Fri Jul 22 13:25:03 2016 +0200 Some minor cleaning up [ci skip]. commit 73ce0212b17cf37f90b7b2c7abd3dee1c8f90520 Author: Alan Garny Date: Fri Jul 22 11:23:31 2016 +0200 Some minor refactoring [ci skip]. commit 57fd5b40212c993795ec88106a317bacba2a2cf5 Author: Alan Garny Date: Fri Jul 22 11:04:59 2016 +0200 Some minor refactoring [ci skip]. Renamed `GraphPanelWidgetCustomAxesWindow` to `GraphPanelWidgetCustomAxesDialog`. commit 296b0470892b18d9a3692de507ccbea3bbabf480 Author: Alan Garny Date: Fri Jul 22 11:01:24 2016 +0200 Some minor refactoring [ci skip]. Renamed `PreferencesWindow ` to `PreferencesDialog `. commit 930704ab3256d5c69df4edbccb8023f1dab263bb Author: Alan Garny Date: Fri Jul 22 10:58:01 2016 +0200 Some minor refactoring [ci skip]. commit a2a547310e6959d8452786369b7e604fe01f8449 Author: Alan Garny Date: Fri Jul 22 10:57:24 2016 +0200 Some minor refactoring [ci skip]. Renamed `PluginsWindow` to `PluginsDialog`. commit 8acf6219135645980658f0c5d66398f778ba510b Author: Alan Garny Date: Fri Jul 22 10:50:55 2016 +0200 Some minor refactoring [ci skip]. Renamed `CheckForUpdatesWindow` to `CheckForUpdatesDialog`. commit 650a6e756f8dddc4cd3c4b21a77181142c711e04 Author: Alan Garny Date: Thu Jul 21 18:14:03 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit a1d82ba6b54523fa15f497dc793ad948bd6f3709 Author: Alan Garny Date: Thu Jul 21 18:00:34 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 3da6f94bb674e5c6507d0b7dd92bd7a4774226a1 Author: Alan Garny Date: Thu Jul 21 16:46:18 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 2e76d725e6b0b7f3292001bb0b8976dcb47e1305 Author: Alan Garny Date: Thu Jul 21 16:38:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit e8632db5a2bd5e5937797484a82d8978fbffec73 Author: Alan Garny Date: Thu Jul 21 16:29:32 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 18af23847ccc465c88fb52972d442589ddc58b16 Author: Alan Garny Date: Thu Jul 21 16:17:40 2016 +0200 Some minor cleaning up [ci skip]. commit f6ff90f2cda533f4f5e15f21d3325c6a8fbc48d5 Author: Alan Garny Date: Thu Jul 21 15:30:07 2016 +0200 Some minor cleaning up [ci skip]. commit a120ef0c27dc55f4774e2c9aafb769b645e9faa6 Merge: e36c7d03f a72c0def5 Author: Alan Garny Date: Thu Jul 21 15:21:01 2016 +0200 Merge branch '\''master'\'' into issue1008. commit a72c0def57f0cf2961bc3126f432971104e8fdc4 Author: Alan Garny Date: Thu Jul 21 15:20:34 2016 +0200 Single Cell view: some slight improvements to the populating of the Parameters panel [ci skip]. commit e36c7d03fd8bf028e537fd0975acc380c73d6ac3 Author: Alan Garny Date: Thu Jul 21 13:41:27 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit d4ac47c9f2d2f04bef2e06309a8e98ba15678753 Author: Alan Garny Date: Thu Jul 21 13:40:13 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 2ccd6644af6f0877463ad18355fa86d6aaa9ceab Merge: b6627fc2c 69979b5df Author: Alan Garny Date: Thu Jul 21 13:33:16 2016 +0200 Merge branch '\''master'\'' into issue1008. commit 69979b5df8f970d5aa5297f9b5047a310e508e08 Author: Alan Garny Date: Thu Jul 21 13:32:41 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit b6627fc2c1908c01c807b0b7e8bcd9ef63ee0081 Author: Alan Garny Date: Thu Jul 21 11:42:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 44213fa27604a63632680ddfeae99ec2f004999d Author: Alan Garny Date: Thu Jul 21 10:56:38 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit e0bc9e49ecb6b99592858ee0b8e19ade99d73bbf Merge: f2b9330c0 5191e58c4 Author: Alan Garny Date: Wed Jul 20 14:48:31 2016 +0200 Merge branch '\''master'\'' into issue1008. commit 5191e58c44cc589725db4c9cdcc9d6c4efef0592 Author: Alan Garny Date: Wed Jul 20 14:47:35 2016 +0200 Some minor cleaning up [ci skip]. commit b9e0c961e07e5a6d7c4e0b41eb57f386da0c42af Author: David Brooks Date: Wed Jul 20 13:37:01 2016 +0100 Some minor cleaning up. Replaced `Q_SIGNALS` and `Q_SLOTS` with `signals` and `slots`, respectively. commit 7ebd66011386055099a4c89fbc6123a0c56ad869 Merge: 2d9bf3ab9 82204a869 Author: David Brooks Date: Wed Jul 20 13:31:45 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit f2b9330c03765a82fe9df8fc8cd8073cee9eb3c3 Merge: 612f95b7a 82204a869 Author: Alan Garny Date: Wed Jul 20 14:29:37 2016 +0200 Merge branch '\''master'\'' into issue1008. commit 82204a86962a6e1e9b1c5a10bda6c24ae875cfdd Merge: 97cee0f88 b585935ac Author: David Brooks Date: Wed Jul 20 13:16:26 2016 +0100 Merge pull request #1043 from dbrnz/vs2015bsml Upgrade BioSignalML libraries for Windows to VS2015 (#1042) commit b585935ac6d81cfd6dcf8210c3c72518ae4c27f0 Author: David Brooks Date: Wed Jul 20 12:58:52 2016 +0100 Upgrade BioSignalML libraries for Windows to VS2015 (#1042) commit 612f95b7a9691c4f84ce26a975380d43479a4ec7 Merge: 884dfd59a 97cee0f88 Author: Alan Garny Date: Wed Jul 20 11:39:13 2016 +0200 Merge branch '\''master'\'' into issue1008. commit 97cee0f88031d1b8b7edd0448ca1c7ffee020317 Author: Alan Garny Date: Wed Jul 20 11:37:48 2016 +0200 Some minor cleaning up [ci skip]. commit 884dfd59a6f197ae1dc5c220ad29e29b60edf316 Merge: 8ffe8806e e16b32ecb Author: Alan Garny Date: Tue Jul 19 18:45:05 2016 +0200 Merge branch '\''master'\'' into issue1008. commit e16b32ecbe8fa363fd38332af8ec8ea862faa553 Author: Alan Garny Date: Tue Jul 19 18:35:02 2016 +0200 Some minor cleaning up. Replaced `Q_SIGNALS` and `Q_SLOTS` with `signals` and `slots`, respectively. commit 8ffe8806e56e3685c2b8222f4c27c2ec9d544cb6 Author: Alan Garny Date: Tue Jul 19 18:04:20 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit e47cf783388458d7a32410314805fa220c24fc40 Author: Alan Garny Date: Tue Jul 19 17:54:24 2016 +0200 Data store exporters: some work on allowing the selection of model parameters (#1008). commit 3eb718ee36bf1d03e611e71c470431cfd02e8fe7 Author: Alan Garny Date: Tue Jul 19 15:49:59 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 3b2fdded09373e7147f5455f4b4fd6cbf29607a9 Author: Alan Garny Date: Tue Jul 19 15:45:17 2016 +0200 Some minor cleaning up [ci skip]. commit 29a4d697c5a171f43a80b0ff6b00dc9380a216af Author: Alan Garny Date: Tue Jul 19 15:43:05 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit b2da5727f36d3d60fcfab2704e9d5efd49601a8a Author: Alan Garny Date: Tue Jul 19 15:38:48 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 37e2e878321bc64eb14da0057fa1eada1e3bc4b4 Author: Alan Garny Date: Tue Jul 19 15:38:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 8004a9a273de9158574044a43d087bafe860658c Author: Alan Garny Date: Tue Jul 19 15:12:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 7f2e280edfd0d4c6c422df623f796e71da260885 Author: Alan Garny Date: Tue Jul 19 15:06:36 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 75d0e97072620db1f30c6cb14f00be399ec794dc Author: Alan Garny Date: Tue Jul 19 15:01:25 2016 +0200 Some minor cleaning up [ci skip]. commit 8b755b52e9d8946adf667f4a2dfcf4c248123999 Author: Alan Garny Date: Tue Jul 19 14:43:30 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 3feca5f8d57354591348d25c6cc37030a1dbd258 Author: Alan Garny Date: Tue Jul 19 14:32:56 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 87f85e39b4be970c5781274f6c64834439367729 Author: Alan Garny Date: Tue Jul 19 14:29:39 2016 +0200 Some minor cleaning up [ci skip]. commit 367e035218f66429d9a5f051c5e99924d4ee0b15 Author: Alan Garny Date: Tue Jul 19 13:21:42 2016 +0200 Some minor cleaning up [ci skip]. commit b562cfa38b01fa09d1e277b2316c31eac574085c Author: Alan Garny Date: Mon Jul 18 17:08:55 2016 +0200 Slight update to the developer documentation [ci skip]. commit 2d4fd3d8ef182145dcdbd1ba96ef29b150e221c8 Author: Alan Garny Date: Mon Jul 18 17:07:55 2016 +0200 jQuery: upgraded to version 3.1.0 (closes #1041). commit 85ac9a7d445ad6e23b90c84c864f55fe74131cfa Author: Alan Garny Date: Mon Jul 18 15:30:04 2016 +0200 Some minor cleaning up [ci skip]. commit 63205f4820b1f178e40245a872320fe00e356170 Author: Alan Garny Date: Mon Jul 18 15:06:10 2016 +0200 Text-based editing views: fixed a small problem with switching editing views for the same file resulting in file changes (and other things) not being tracked anymore (closes #1040). commit e7d5bd99b15daa04141ad8c6700880190af3a5b0 Author: Alan Garny Date: Mon Jul 18 12:55:21 2016 +0200 General: slight improvement to the handling of new files (related to issue #1020). commit fa77232a0f44e90ed8e204d8483bdadcc656a5fb Author: Alan Garny Date: Sun Jul 17 17:54:31 2016 +0200 Reverting commit 9c957bb. Commit 9c957bb was already reverting commit de2db01, but the problem wasn’t that we needed to export LD_LIBRARY_PATH and PATH, but the fact that we needed to ship the standard C++ library used to build Qt WebKit (see commit 2aa154e). commit 2aa154ea8e77fb2d9f75dd5c5de200c0a06f5406 Author: Alan Garny Date: Sat Jul 16 23:12:52 2016 +0200 Linux: ship the standard C++ library used to build Qt WebKit. Indeed, to address issue #1037, we had to upgrade to GCC/G++ 4.9+, which means using a different version of libstdc++ than the one shipped with Ubuntu 14.04 LTS (while it is available on Ubuntu 16.04 LTS). So, we need to ship it with OpenCOR in case the version of Ubuntu used by someone is not recent enough. commit fc972845447eb427d1d26fff335264df3a48dcfe Author: Alan Garny Date: Sat Jul 16 23:02:52 2016 +0200 Some minor cleaning up [ci skip]. commit 6711c5dc1f2e4155e1bb072b633ce521cf1e5876 Author: Alan Garny Date: Sat Jul 16 09:54:30 2016 +0200 Some minor cleaning up [ci skip]. commit 9c957bb9684324b0f5f192f60785e59647021fd5 Author: Alan Garny Date: Fri Jul 15 14:06:54 2016 +0200 Reverting commit de2db01. In the end, to export PKG_CONFIG_PATH only is not enough. Indeed, although it allowed OpenCOR to work on Ubuntu 16.04 LTS, it wasn’t working on Ubuntu 14.04 LTS anymore (!!). commit 394cdbfcc43a296a4be9d310f9cb2a90a8c38103 Author: Alan Garny Date: Fri Jul 15 09:30:15 2016 +0200 Revert "Third-party plugins: they are plugins, so we don'\''t need the .lib files on Windows (unlike '\''proper\ shared libraries)." This reverts commit 4e9097f80af27431e6803d9ab665ab93a68659a6. Indeed, we actually need them in fact… otherwise, we can’t build plugins that depend on those other plugins. commit 4e9097f80af27431e6803d9ab665ab93a68659a6 Author: Alan Garny Date: Thu Jul 14 23:24:03 2016 +0200 Third-party plugins: they are plugins, so we don'\''t need the .lib files on Windows (unlike '\''proper\ shared libraries). commit fd22cf2b977103bef6b986f483a9749fc90ef382 Merge: de2db0146 3cf119627 Author: Alan Garny Date: Thu Jul 14 22:23:53 2016 +0200 LLVM: upgraded to version 3.8.1 (closes #1036). commit 3cf1196278876a056bd64d2f5ad5594cc9e74afc Author: Alan Garny Date: Thu Jul 14 21:36:47 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit 26a81b364cbfb6d3b5ab88b6e9e0209ee011c2a7 Author: Alan Garny Date: Thu Jul 14 21:30:27 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit 840f22213ed4dff950e9dae80fdcd2e7064ed348 Author: Alan Garny Date: Thu Jul 14 15:28:07 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit e3477a6d5ac8c648f39d8c58ff2b91d4e79b2e9f Merge: c1724c398 de2db0146 Author: Alan Garny Date: Thu Jul 14 14:21:39 2016 +0200 Merge branch '\''master'\'' into issue1036. commit de2db0146011379fc7ef3c70f06fce596a295244 Author: Alan Garny Date: Thu Jul 14 14:03:36 2016 +0200 Some minor cleaning up [ci skip]. commit c1724c3980497724c3ec9d5146c6e8839d695eb7 Author: Alan Garny Date: Wed Jul 13 15:05:43 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit e5dc6f963bbfe0d04276eaed9b4275c6f7801c35 Merge: f7efa5da1 a90f7a03e Author: Alan Garny Date: Wed Jul 13 15:04:16 2016 +0200 Merge branch '\''master'\'' into issue1036. commit a90f7a03e9969ab8d90434157035406aa2c41d50 Merge: 940d9d5da ee415104d Author: Alan Garny Date: Wed Jul 13 15:00:11 2016 +0200 Qt WebKit: now use the same version of ICU as Qt itself on Linux (closes #1037). Note: we are still waiting for Travis CI to run a debug version ee41510 on OS X, but we know it works (since this PR is all about Linux), so just going ahead... commit 940d9d5daf04015ab90907cae76903f234a598f3 Author: Alan Garny Date: Wed Jul 13 14:58:01 2016 +0200 Revert "Slight update to our downloads page [ci skip]." This reverts commit 733510b002f843cbb81ca29f02be6266154d83d1. commit 733510b002f843cbb81ca29f02be6266154d83d1 Author: Alan Garny Date: Wed Jul 13 13:40:56 2016 +0200 Slight update to our downloads page [ci skip]. commit ee415104d31cbb24b855212bae60854999ad9598 Author: Alan Garny Date: Wed Jul 13 13:28:54 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux (#1037). commit 3e089c3eed015fb4c5a2bf66574f8f9b0f2238ed Author: Alan Garny Date: Wed Jul 13 13:06:10 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux (#1037). commit 097a3da242330a8da5994405456e2a6b5cf0ba3f Author: Alan Garny Date: Tue Jul 12 20:26:46 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux (#1037). commit cd0c4a5f216413790540c9670bfede030b034e0c Author: Alan Garny Date: Tue Jul 12 20:10:21 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux (#1037). commit 908f8d0f5975067c7f1c943b1dac8e3a8ee6b1b7 Merge: e9bd81704 5d3f0119c Author: Alan Garny Date: Tue Jul 12 19:54:43 2016 +0200 Merge branch '\''master'\'' into issue1037. commit f7efa5da1740a4d2bf0cfaa7447ca8343a4bcb9f Merge: ae9bf8db6 5d3f0119c Author: Alan Garny Date: Tue Jul 12 19:54:27 2016 +0200 Merge branch '\''master'\'' into issue1036. commit 5d3f0119cee5fe910d78ae8ae9b11119189faebb Author: Alan Garny Date: Tue Jul 12 19:54:13 2016 +0200 Some minor cleaning up [ci skip]. commit e9bd81704a166fb865383d5e793c65000ff9717a Author: Alan Garny Date: Tue Jul 12 19:53:33 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux (#1037). commit fb7ffe9510da55f879f79902166402bbdb22dbe2 Author: Alan Garny Date: Tue Jul 12 19:04:53 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt on Linux (#1037). commit ae9bf8db677229f8be54f3b973d31bc637a2f06f Author: Alan Garny Date: Tue Jul 12 18:56:55 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit bb51ba002e44bc580763c92056426656e0538571 Author: Alan Garny Date: Tue Jul 12 18:52:38 2016 +0200 LLVM: some work on upgrading to version 3.8.1 (#1036). commit eefa51d87cc4d3d2bef51c53009ca956ba7f979c Author: Alan Garny Date: Tue Jul 12 10:26:21 2016 +0200 Slight update to the developer documentation [ci skip]. commit 77babe5314fbebab9ffe8aca87095a8ab1739079 Author: Alan Garny Date: Mon Jul 11 19:37:00 2016 +0200 Oops, a couple of oversights while working on issue #1033. commit 171f560c64ab88194122885819c09e9bfa7c409d Author: Alan Garny Date: Mon Jul 11 19:27:19 2016 +0200 CellML Annotation view: makes sure that our view is properly translated [ci skip]. commit ebdea15c48fbbc7c62122ca01d7660a7e0998939 Author: Alan Garny Date: Mon Jul 11 18:58:02 2016 +0200 Some minor cleaning up [ci skip]. commit 4d346470bf43568fbe0a73a0dba7d0d3a6fccbdd Merge: 50da0044d dbaab6bdb Author: Alan Garny Date: Mon Jul 11 18:36:34 2016 +0200 CellML Annotation and Single Cell views: improved the switching from one file to another with the mouse over a button-like widget and the status bar visible (closes #1033). commit dbaab6bdb86970fa8d07cafa860176495a236454 Author: Alan Garny Date: Mon Jul 11 18:09:56 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible (#1033). commit 98a94aed213d033db05e0280e22a0d6c6faf02e6 Author: Alan Garny Date: Mon Jul 11 17:58:11 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible (#1033). commit ab610dca3fa833d8034d78965954988b9f2ce274 Author: Alan Garny Date: Mon Jul 11 17:51:38 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible (#1033). commit 50da0044dd7b316da31aad9848b4a417c60e3a17 Author: Alan Garny Date: Mon Jul 11 17:43:50 2016 +0200 Some minor cleaning up [ci skip]. commit 17308e21baa8850ea950e03f0a626a33b559b954 Author: Alan Garny Date: Mon Jul 11 17:34:27 2016 +0200 Some minor cleaning up [ci skip]. commit b2fe236a50f4c5cbe5135852ef72150879b2aca0 Author: Alan Garny Date: Mon Jul 11 17:27:43 2016 +0200 Some minor cleaning up [ci skip]. commit 45d4147364833ad7fdb381ca501d420f67023b06 Author: Alan Garny Date: Mon Jul 11 17:22:46 2016 +0200 Some minor cleaning up [ci skip]. commit 2aab1e26ec0e5266edfab95b915bbd5bd431147f Author: Alan Garny Date: Mon Jul 11 16:27:56 2016 +0200 Some minor cleaning up [ci skip]. commit 2d9bf3ab9253b70a2039b71b4c54f349ee33c2b2 Merge: 29511a703 4afda033c Author: David Brooks Date: Thu Jul 7 23:07:18 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 29511a703eeaab1b8bafd1d82c9e487f12211046 Author: David Brooks Date: Thu Jul 7 22:48:02 2016 +0100 Users couldn'\''t log off PMR... commit d4119b19e016ab5d5dd9592c6aa70af83b905d72 Author: David Brooks Date: Thu Jul 7 22:40:44 2016 +0100 Some work on PMRWorkspaces plugin (#969) Don'\''t create a new repository unless we have a directory in which to clone it. commit e870f04fa1a931b13d33376cb11ae55ae364c964 Author: David Brooks Date: Thu Jul 7 22:39:53 2016 +0100 Some work on PMRWorkspaces plugin (#969) A newly created workspace is an empty git repository so allow for this with getting status, doing the initial commit, and when pushing. commit 71e3a6fbd225512637e3f7c07b55181f8b752536 Author: David Brooks Date: Thu Jul 7 22:05:12 2016 +0100 Some work on PMRWorkspaces plugin (#969) Show a '\''?'\'' on a workspace'\''s header row if there are unstaged files. commit 4afda033c67e84011a553eb8de50ed9078af8109 Author: Alan Garny Date: Wed Jul 6 23:59:03 2016 +0200 PMR window: file exposures now include SED-ML files, if any (closes #1032). commit 4302b07fe8b45e8644ede98f5f05485a7aed7b0e Merge: 517078b87 efc273c64 Author: David Brooks Date: Wed Jul 6 12:32:04 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 517078b87a8ff71ff5809202b098c3fd17a40844 Author: David Brooks Date: Wed Jul 6 12:20:23 2016 +0100 Code tidy up. commit 3ccda5a7684eb5b6c1321189eab3876baba5ac5f Author: David Brooks Date: Wed Jul 6 12:18:30 2016 +0100 Some work on PMRWorkspaces plugin (#969) Tidy up git push; try setting push options after a clone. commit 8d98c893da8767fa007f23a44a382f8c2ed3a66f Author: David Brooks Date: Wed Jul 6 12:16:51 2016 +0100 Some work on PMRWorkspaces plugin (#969) A newly cloned workspace wasn'\''t being added to the workspace widget'\''s list of workspaces. commit 75a96c5cce4697feb9374d8072aa24492c537de6 Author: David Brooks Date: Wed Jul 6 12:14:25 2016 +0100 Some work on PMRWorkspaces plugin (#969) Implement git commit for a workspace. commit f70a73529a31fd3218518867c0c9b55397bdb949 Author: David Brooks Date: Wed Jul 6 12:09:15 2016 +0100 Some work on PMRWorkspaces plugin (#969) Tidy up of workspace widget'\''s layout, icons, context menu, and prompts. commit 7636a69cd8f00767ff048a7bc5586bd9bc9a1005 Author: David Brooks Date: Wed Jul 6 11:59:52 2016 +0100 Some work on PMRWorkspaces plugin (#969) Always build entire HTML tree for a workspace and hide unexpanded folders instead of generating HTML as folders are first expanded. commit 3f443a0e93897e28c7a0d802d3952f61a60376a2 Author: David Brooks Date: Wed Jul 6 11:52:53 2016 +0100 Some work on PMRWorkspaces plugin (#969) A workplace can have both files to commit and require pushing. commit b0f831d5824f0312cde4f2206f078c87b0e41d3c Author: David Brooks Date: Wed Jul 6 11:47:33 2016 +0100 Some work on PMRWorkspaces plugin (#969) Track the git status of a workplace'\''s files. commit efc273c6454c233dbf7bf6dd5117c0f257604810 Author: Alan Garny Date: Tue Jul 5 21:01:30 2016 +0200 PMR support: slight improvements to the retrieval of exposure files [ci skip]. commit a34cce659ee8bf662b0020bae7933d5138f6f960 Author: Alan Garny Date: Tue Jul 5 20:01:46 2016 +0200 Single Cell view: the VOI isn’t listed in the Parameters panel'\''s popup menu anymore, if it isn'\''t defined in the main CellML file (closes #1030). commit 91b62b123fdf19a54c3682829a1d954a7949fd9b Author: David Brooks Date: Tue Jul 5 14:12:41 2016 +0100 Some work on PMRWorkspaces plugin (#969) Clicking on folder icons now expands/closes them. commit cdec681169579e63eaf5ef0785e45bd719d3e3ae Author: David Brooks Date: Tue Jul 5 13:50:36 2016 +0100 Tweaks to workspace widget'\''s stylesheet. commit f89162851c08dd4763415ceba7d6edc6f7ed360c Author: David Brooks Date: Tue Jul 5 13:48:38 2016 +0100 Some work on PMRWorkspaces plugin (#969) Get git index stage/unstage working; tweaks to error messages and displayed file status. commit 1821e7acab68c9ffd7eb73a63425a23a346f6478 Author: David Brooks Date: Tue Jul 5 13:46:31 2016 +0100 Some work on PMRWorkspaces plugin (#969) Ensure PmrWorkspace signals are always connected to the PmrRepository the workspace is part of. commit ac8eb40eb8e504abe656cf6827c94d36a8ea93d6 Author: David Brooks Date: Mon Jul 4 23:33:55 2016 +0100 Some work on PMRWorkspaces plugin (#969) Tweaks to widget layout. commit 6e11d5cf6a7f5d0f98517a42be79370b95f6bfc3 Author: David Brooks Date: Mon Jul 4 23:32:42 2016 +0100 Some work on PMRWorkspaces plugin (#969) Be consistent with CSS indentation. commit 84c7b75f4658074518e7b6dd132e1052a351fca7 Author: David Brooks Date: Mon Jul 4 22:41:16 2016 +0100 Some work on PMRWorkspaces plugin (#969) Allow files to be staged (and un-staged) for committing. commit af56d59c81ebb5021b4faef75a2021dd96c57ef5 Author: David Brooks Date: Mon Jul 4 18:08:57 2016 +0100 Some work on PMRWorkspaces plugin (#969) Add "Show in Finder/Explorer" to a workspace'\''s context menu. commit 87f149c3a44acb665be959b66c1303fa5f3642ae Author: David Brooks Date: Mon Jul 4 18:07:05 2016 +0100 Some work on PMRWorkspaces plugin (#969) Tidy up code. commit 45ce9ed2bdcafd642b6acfbe1919e743402c6612 Author: David Brooks Date: Mon Jul 4 18:04:40 2016 +0100 Some work on PMRWorkspaces plugin (#969) Get `git push` working. commit d30bddd198515587f92937de2314b92988499101 Merge: bdbb96d9c 2be4d2581 Author: David Brooks Date: Sun Jul 3 21:26:06 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit bdbb96d9c10c74f6c896159e9b8d3cb7d00df204 Author: David Brooks Date: Sun Jul 3 21:24:49 2016 +0100 Some work on PMRWorkspaces plugin (#969) Use correct icons... commit 8069c458182d47f95fa15f812502093682f70709 Author: David Brooks Date: Sun Jul 3 21:11:14 2016 +0100 Fix typo. commit 9de74ac8465962ba5a2966c802755b1ed366f668 Author: David Brooks Date: Sun Jul 3 21:11:04 2016 +0100 Some work on PMRWorkspaces plugin (#969) Watch for changed files (from editor saving) and update git status. commit 73caa3338e887c5e4cb44a93b3cc09cb5c0a4ea3 Author: David Brooks Date: Sun Jul 3 21:09:41 2016 +0100 Some work on PMRWorkspaces plugin (#969) Generalise git code and implement push (untested). commit 2be4d2581caa24ff797c0e93f772a2e509b6684f Author: Alan Garny Date: Sat Jul 2 22:10:21 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering (closes #1027) [ci skip]. commit 901a2226d931989240a9ce33cf634809b3c6c447 Author: Alan Garny Date: Sat Jul 2 21:57:54 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering (closes #1027). commit 2eddbd54398bccd70aed7a4dffe88b88287a2d72 Author: Alan Garny Date: Sat Jul 2 19:44:03 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering (closes #1027). commit 5c56bce3b5ce45a286218bde32329909411b0985 Author: Alan Garny Date: Sat Jul 2 13:55:52 2016 +0200 Some minor cleaning up related to our build system [ci skip]. We dropped our use of SHOW_INFORMATION_MESSAGE. It was only for convenience and, yet, it was too much hassle to get it 100% right. commit c2e9a0f1d7f065fd14a2dad207d740d2d08dccaf Author: Alan Garny Date: Sat Jul 2 11:33:49 2016 +0200 Slight refactoring in the Single Cell view code [ci skip]. commit 5bca57a832aa32fe4fb71f2c6bb11925ebaca9f6 Author: Alan Garny Date: Sat Jul 2 01:50:56 2016 +0200 Slight updates to our downloads pages [ci skip]. commit af66fc4a0c941e21b76dd075692d1e60726ae47f Author: Alan Garny Date: Sat Jul 2 01:50:16 2016 +0200 Editor (find/replace widget): fixed a problem with the icon for the search options / magnifier looking wrong (closes #1026). commit 572c7fe1cfd0f0cba67f8183f26d96e91cd5cb8a Author: Alan Garny Date: Fri Jul 1 22:28:22 2016 +0200 Some minor cleaning up of our CellML runtime procedure. That cleaning up is a direct consequence of our work on issue #1025. commit c895eaf511232baff28ecb656de357718f97cafb Author: Alan Garny Date: Fri Jul 1 21:55:01 2016 +0200 Some minor cleaning up of the check for updates menu item [ci skip]. commit 9e1ad30d1b9417076e8f48463ce531d879e34c8f Author: David Brooks Date: Fri Jul 1 17:50:34 2016 +0100 Some work on PMRWorkspaces plugin (#969) Open files shown in workspaces'\'' window when they are clicked on. commit 53a8f6338d965f7a1dc4b11e67a5037aff5dfd7d Merge: c9bc90a40 98fbc0004 Author: David Brooks Date: Fri Jul 1 16:35:55 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit c9bc90a40f64e089ae067fa6ec639c3b1c479a17 Author: David Brooks Date: Fri Jul 1 16:33:49 2016 +0100 A pointer wasn'\''t initialised... commit 98fbc00048dd9e6ece6c7828585ee2c4ae216027 Author: Alan Garny Date: Fri Jul 1 16:31:41 2016 +0200 Some minor cleaning up [ci skip]. commit 0ef205945a4bc9298bd667ba5dcb0e58f24063c9 Author: Alan Garny Date: Fri Jul 1 16:27:01 2016 +0200 New snapshots. commit 57572ff7c3c16efb3669f27891ee0e18e82608c5 Author: Alan Garny Date: Fri Jul 1 16:23:54 2016 +0200 Fixed a problem with some model parameters being listed in the wrong component (closes #1025). commit 4df767e22b54ec8352620273a39a41524dfea887 Author: Alan Garny Date: Fri Jul 1 16:15:27 2016 +0200 Reverting recent snapshot changes [ci skip]. We didn’t end up publishing the recent ‘snapshot’, so reverting the changes so that we can then (later on) have a trace of the commit that actually corresponds to our (future) snapshot. commit b612174d7a0855472777ebc0dd0daceaba5dc8ea Author: Alan Garny Date: Fri Jul 1 16:14:12 2016 +0200 Some minor cleaning up [ci skip]. commit 579a774201b9daa614e547575ba55da8a1d4ba68 Author: Alan Garny Date: Fri Jul 1 14:49:46 2016 +0200 Single Cell view: a (short) simulation now look smooth again (closes #1024). Note: because of various changes that we did here and there, there is now no need to call QCoreApplication::processEvents() in SingleCellViewInformationParametersWidget::updateParameters(). (Both former issues #656 and #733 have been checked in that regards.) commit 838e413be45d97e38c95f14cf09e7b1f6708dcaa Author: Alan Garny Date: Fri Jul 1 13:05:14 2016 +0200 New snapshots. commit a0fb89b6b6e4c1cb5dc90c4c113f083008b8cf86 Author: Alan Garny Date: Fri Jul 1 13:03:55 2016 +0200 Addressed an issue with deploying OpenCOR on Ubuntu 16.04 LTS [ci skip]. Although we did originally add support for Ubuntu 16.04 LTS (see issue #965), the fact that we now build Qt WebKit ourselves (see issue #1015) means that our copy of Qt WebKit (somehow) uses the system version of ICU. Since we build Qt WebKit on Ubuntu 14.04 LTS, it means that deployment on that platform was fine, but not on Ubuntu 16.04 LTS (since the system version of ICU on that platform is different). So, the solution, here, is ‘simply’ to deploy both the system version of ICU on which Qt WebKit depends, as well as the Qt version of ICU used by the other Qt libraries we got from Qt itself. commit 1cb80c51c5a3acecf6230e003e4db7f73bb67bb2 Author: Alan Garny Date: Fri Jul 1 08:54:19 2016 +0200 Some minor cleaning up [ci skip]. commit fdef3dba932f5c5e4b3ddef5a4eb3c0ba9af486b Author: Alan Garny Date: Thu Jun 30 18:42:24 2016 +0200 Slight improvement to switching files [ci skip]. The problem reported in issue #405 is still relevant, but rather than temporarily hiding the status bar, it looks like we can (now?) simply temporarily disable updates for our central widget. Note, however, until snapshot 2016-05-30 (built using Qt 5.4.2), everything was fine, but then when we switched to Qt 5.5.1 and then Qt 5.6.1 LTS, we have some additional flickering when switching files (using Ctrl+Tab repeatedly), and it’s not clear yet how to fix it… commit 13f20d2795689278c0f91c739adaf2992c4dc1bb Author: Alan Garny Date: Thu Jun 30 16:01:02 2016 +0200 New snapshots. commit 6971da35b77fdb0a9e25655d048eccf560ed66da Author: Alan Garny Date: Thu Jun 30 15:59:53 2016 +0200 Slight updates to our GitHub '\''homepage'\'' and proper homepage [ci skip]. commit e4253a3f5f201afb4b27c97917965ab68896932f Author: Alan Garny Date: Thu Jun 30 15:54:30 2016 +0200 Reverting recent snapshot changes [ci skip]. We didn’t end up publishing the recent ‘snapshot’, so reverting the changes so that we can then (later on) have a trace of the commit that actually corresponds to our (future) snapshot. commit 741652e66041d6c72789c7efffd0182628c15cb5 Author: Alan Garny Date: Thu Jun 30 15:44:08 2016 +0200 Single Cell view: fixed a small problem with plotting a (somewhat) flat graph results in the Y ranges being incorrect (closes #1023). commit 729a1d2b49ef1cc5ded7b8a7f33073e769f9d05f Author: Alan Garny Date: Thu Jun 30 14:50:21 2016 +0200 GUI: improved the switching of files (closes #1022). commit a1f344beb189c253363c5218800820c3abc6ed77 Author: David Brooks Date: Thu Jun 30 11:02:15 2016 +0100 Minor tidy up. commit e488f961b7fd95ff353aa9d71a981481f2bc25bc Merge: 3ab5e52ed 93a3efb13 Author: David Brooks Date: Thu Jun 30 10:28:30 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 3ab5e52edaef6192f1e068f6d1ea2b335d3cb88b Author: David Brooks Date: Thu Jun 30 10:26:50 2016 +0100 Some work on PMRWorkspaces plugin (#969) Actually emit an information message... commit a724f47a56feec7efbb65ace92404f9f39d00eba Author: David Brooks Date: Thu Jun 30 10:26:17 2016 +0100 Some work on PMRWorkspaces plugin (#969) Use the workspace manager to ensure we don'\''t re-clone a workspace we are already managing and refactor code for getting an empty directory to clone into. commit 93a3efb137696ca76b320f414b28e896f027cbd3 Author: Alan Garny Date: Thu Jun 30 11:13:44 2016 +0200 New snapshots. commit 990384e6bfc567fb7fd930452522806af387d30c Author: Alan Garny Date: Thu Jun 30 10:58:44 2016 +0200 CellML Text view: allow comments that contain -- (double dash) in them (closes #1019). commit fce95f87069c5c6fc1b2921fe7e16ca887e3f03d Author: Alan Garny Date: Thu Jun 30 10:21:48 2016 +0200 CellML Text view: allow comments that contain -- (double dash) in them (closes #1019). commit 0cb2e04298cdcfb58d93e45fa9f9b53f1f26d59e Author: Alan Garny Date: Wed Jun 29 17:06:26 2016 +0200 Fixed a small problem with OpenCOR crashing when trying to validate a malformed CellML file (closes #1018). commit 82a318285dcecdb39166839ea13ad4d48fd1ac0c Author: Alan Garny Date: Wed Jun 29 17:05:25 2016 +0200 Some minor cleaning up [ci skip]. commit 5f02ef39338e9002c769c9df16766048c4f9bb0b Author: Alan Garny Date: Wed Jun 29 16:54:22 2016 +0200 A new file is not automatically considered as modified anymore (closes #1020). commit 876f4312e6196aa6aa171268ef4faccf6fe6327d Author: Alan Garny Date: Wed Jun 29 16:51:52 2016 +0200 Slight update to our download page [ci skip]. commit 8857e686e8b01638684a262244f09f9074e72372 Merge: dd7e17bb9 e67124004 Author: David Brooks Date: Wed Jun 29 15:47:51 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit b9c0e9611b7ceb6013db806133c8f572ec94ccfc Author: Alan Garny Date: Wed Jun 29 16:45:37 2016 +0200 Some minor cleaning up [ci skip]. commit e67124004a014ab3a8355a507bf84696d69ec624 Merge: eb59c6e25 1ef3dcce0 Author: Alan Garny Date: Wed Jun 29 13:45:49 2016 +0200 Upgraded to Qt 5.6.1 LTS + Qt WebKit (closes #1015, and also #1010 as a result). commit eb59c6e2567131a58afe5515b71bca3e45dcbd20 Author: Alan Garny Date: Wed Jun 29 13:28:45 2016 +0200 SED-ML API: slight update to the README.txt file [ci skip]. commit 1ef3dcce0281b610d962cbc4257f2383a0556cab Author: Alan Garny Date: Wed Jun 29 13:18:50 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Rebuilt the SED-ML API binaries. commit 692028c720353b8e5853a8edcae639dae177f438 Author: Alan Garny Date: Wed Jun 29 13:02:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Rebuilt the SBML API binaries. commit 5be87de495108be184bf47c6e3945134c56252e6 Author: Alan Garny Date: Wed Jun 29 12:57:37 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Rebuilt the SBML API binaries. commit d21d4c0da17e7a88adc676aa6a3de6ca1e3d55f8 Author: Alan Garny Date: Wed Jun 29 11:31:07 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 1b9e3c7b2df7f1de03c4d5ae678355f6546bace8 Author: Alan Garny Date: Wed Jun 29 11:26:19 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Got the CellML Tools tests to work again on Windows. commit 0349ac640bbac2ca4f0dc26269541b2049e3b854 Author: Alan Garny Date: Wed Jun 29 10:48:24 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Rebuilt the CellML API binaries. commit dd7e17bb9048d7a1a2b4572528a45adf29e0a094 Author: David Brooks Date: Tue Jun 28 20:34:23 2016 +0100 Tidy up. commit 38b8e1ab4cea1b68e01f9a1d9a621492c2d19ae9 Author: David Brooks Date: Tue Jun 28 20:33:53 2016 +0100 Some work on PMRWorkspaces plugin (#969) Always select a row after a single click in it. commit 45bfdfccf33f18af3b1898fdf0e94902f1859814 Author: David Brooks Date: Tue Jun 28 20:28:43 2016 +0100 Some work on PMRWorkspaces plugin (#969) Scroll workspaces view to the selected item after initialising and adding a new workspace. commit b83bca009137259b97cb49f119bd3115a26fc811 Author: David Brooks Date: Tue Jun 28 19:58:29 2016 +0100 Some work on PMRWorkspaces plugin (#969) Always use the default workspace "home" directory when getting an empty director in which to clone a workspace. commit 39739f0202eb6aa76d3ea1b79be7e3c9e08b18c8 Author: Alan Garny Date: Tue Jun 28 20:27:51 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit fc25e7dbf80d28cdecbb8be9cebbffc3cf10bfc0 Author: Alan Garny Date: Tue Jun 28 18:10:22 2016 +0200 LLVM: prevent a C2280 error on Windows using MSVC 2015. commit 7f0c32f2b99082ddc3d7ac1f850c4067734db563 Author: David Brooks Date: Tue Jun 28 16:29:19 2016 +0100 Some work on PMRWorkspaces plugin (#969) Action `` links on a single mouse click. commit b4f1f8f0bb63e304806eb89cea0ee95434d9ed8f Author: David Brooks Date: Tue Jun 28 16:28:07 2016 +0100 Some work on PMRWorkspaces plugin (#969) Use a PMRWorkspacesManager singleton to ensure that the workspaces widget is told of all workspaces being cloned. commit 1f645622a03786b4aff398c74931f8a110399000 Author: Alan Garny Date: Tue Jun 28 16:02:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Getting ready to rebuild all of our third-party plugins (so that they refer to Qt 5.6.1). commit 92a14efccdb131a4b6cbce4e93e85074ec47df66 Author: Alan Garny Date: Tue Jun 28 15:30:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 0db3499f0170e112eb830a45345e2cc3edf2f1a8 Author: Alan Garny Date: Tue Jun 28 14:58:05 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 0dc069aae1cc08ab32672d6ceabdfb128302644b Author: Alan Garny Date: Tue Jun 28 14:52:52 2016 +0200 Slight fix to our user documentation. We forgot to ‘fix’ this after we renamed our Tool plugin section to Tools. commit 8213609636a3ef1b28124af24914f2e86eebe1ee Author: Alan Garny Date: Tue Jun 28 14:52:18 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit a2a7ef34d2b67e44cbdb3647726275657b7e10ee Author: Alan Garny Date: Tue Jun 28 14:46:56 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 143c7d789475b5486f0366face8a3693976b7ec6 Author: Alan Garny Date: Tue Jun 28 14:37:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit bce80850ff1c9633ed2d01daaa83543b29835d1d Author: Alan Garny Date: Tue Jun 28 14:32:51 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit bc66b3fa4d292fd95d323e08f351fb906ce458c1 Author: Alan Garny Date: Tue Jun 28 14:27:52 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 6397bed199966191d72f8d6238f93a95c4bbcef4 Author: Alan Garny Date: Tue Jun 28 14:22:02 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit ceac7227d7d798a4adccfc41321d6636a3eaa830 Author: Alan Garny Date: Tue Jun 28 13:21:41 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 29fe77cba181eb19a038a7408ef6e3a4dc2aa44a Author: Alan Garny Date: Tue Jun 28 13:19:59 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Working on Windows now. commit c3634b2bbc79c0b63a990176cfebaa27ec1a3e33 Author: Alan Garny Date: Tue Jun 28 11:47:00 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 19f0021c49b0f08f2227fa8b9a436dbb6460a9a9 Author: Alan Garny Date: Tue Jun 28 11:46:21 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 776563e2249775d8548318f979d3ef708fc13a39 Author: Alan Garny Date: Tue Jun 28 11:42:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 29482f5f8cfed973c4d78b5ad5a4885836fcba7e Author: Alan Garny Date: Tue Jun 28 11:28:14 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 7395e571208503a8ab3d45ddab538f53fa87f7f3 Author: Alan Garny Date: Tue Jun 28 11:24:35 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 109cb80d19f0c288caa5c6450cb012a1f010647d Author: Alan Garny Date: Tue Jun 28 11:11:38 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Working on Linux now… commit 2419c74179a60afc8f3f2426d1fc858272cb948e Author: Alan Garny Date: Tue Jun 28 10:59:24 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Updated our Qt WebKit’s CMakeLists.txt file so that it now retrieve better our copy of the Qt WebKit libraries. commit dfae42815ef99f052e02de6a5572654dcd730ae1 Author: Alan Garny Date: Tue Jun 28 10:51:51 2016 +0200 Some minor cleaning up. commit c301f260d4956276bad5b7065744c47890052f0b Author: Alan Garny Date: Tue Jun 28 09:56:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Dealing with header files and making sure that it’s all fine for all our supported platforms. commit 6edbe636fb2b2b1c98447f91917f0c76e0bacb79 Author: David Brooks Date: Mon Jun 27 18:50:26 2016 +0100 Work on PMRWorkspaces plugin (#969). GCC doesn'\''t like `static const int`. commit 02b5d0026c77475eb924d98d310d45e654c805c1 Author: David Brooks Date: Mon Jun 27 18:49:40 2016 +0100 Work on PMRWorkspaces plugin (#969). Template instantiations are only needed for Visual C. commit 1664cc65620e69af688beb4df59b8fef3da8eb41 Merge: 71a338c07 904f8725d Author: David Brooks Date: Mon Jun 27 18:41:37 2016 +0100 Merge remote-tracking branch '\''upstream/issue1015'\'' into pmrworkspace-webkit commit 904f8725d91e23af69cc14a148365774fad20642 Author: Alan Garny Date: Mon Jun 27 17:56:29 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). On OS X, we can now retrieve the Qt WebKit libraries from the OpenCOR website, if needed. commit 7eb3ff5d0cb09b580566b584ae533eb8ca7c2f5a Author: Alan Garny Date: Mon Jun 27 17:55:00 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 71a338c07cda11f92beec6c362fe7152fe6f4da6 Merge: f5c501135 0b8df5098 Author: David Brooks Date: Mon Jun 27 16:13:22 2016 +0100 Merge remote-tracking branch '\''upstream/issue1015'\'' into pmrworkspace-webkit commit 0b8df50987b76913b28c6484c47bfe945981a75c Author: Alan Garny Date: Mon Jun 27 16:43:41 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit f5c5011350ea0b83c1871d5c8b9155be89fbaeea Merge: 180112c47 9a2d169c6 Author: David Brooks Date: Mon Jun 27 15:36:32 2016 +0100 Merge branch '\''issue1015'\'' into pmrworkspace-webkit commit 9061dc331c635b9cde21d94ef5ef1819e8b4536a Author: Alan Garny Date: Mon Jun 27 16:21:41 2016 +0200 Some minor cleaning up. commit e45580cf72f48f6e850194f63d8ecdc444acf29a Author: Alan Garny Date: Mon Jun 27 16:02:30 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Some minor cleaning up. commit 9a2d169c6ba6c59568b30a4f206cc3d3b24fc54b Author: Alan Garny Date: Mon Jun 27 15:38:43 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Some minor cleaning up. commit 0d3c2c599955c352f9694a7c7051b699633067c5 Author: Alan Garny Date: Mon Jun 27 15:38:19 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Some minor cleaning up. commit 084dcadb3e6b303835e8aefdde7f72886f2c73d3 Author: Alan Garny Date: Mon Jun 27 15:24:32 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Got things to work on OS X. However, the QtWebKit and QtWebKitWidgets frameworks will have to be retrieved off the OpenCOR website rather than currently being manually copied over. commit cb47d4070b0e008aae11518122465087350aec97 Author: Alan Garny Date: Mon Jun 27 11:43:52 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). Disable some plugins that we cannot currently build. commit 43916a4b87ff6db371e3c6731e4731adc11454f7 Author: Alan Garny Date: Mon Jun 27 11:43:31 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 180112c4730152ab225727ea3cd18c7625e53ff9 Author: David Brooks Date: Sun Jun 26 19:41:48 2016 +0100 Define `O2_DLL_EXPORT` when building `o2` library. commit a4ef3d092251448105fa14717a7d631ee8875987 Merge: 157e8a2eb 88433f07b Author: David Brooks Date: Sun Jun 26 19:39:47 2016 +0100 Merge branch '\''pmrworkspace'\'' of github.com:dbrnz/opencor into pmrworkspace commit 157e8a2eb943b6009dc19d1de7f6c60289aae31c Author: David Brooks Date: Sun Jun 26 19:37:46 2016 +0100 Don'\''t crash if an icon has no available sizes. commit 3c03a62a0a777a59c3440896f379dcaa03e5dd51 Author: David Brooks Date: Sun Jun 26 19:36:29 2016 +0100 Tweak icons displayed against workspaces (#969) commit 88433f07bddfa89db0f95ea0eef64dcf839d6414 Author: David Brooks Date: Sun Jun 26 13:08:37 2016 +0100 Translation files have new text. commit 804d9cf723bdf3adf043401f72539a81ac405c15 Author: Alan Garny Date: Sun Jun 26 12:47:02 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 8f109131a66e03dad8607347d011a81c05599971 Author: David Brooks Date: Sun Jun 26 10:21:05 2016 +0100 Use newer version of `o2` that supports Windows DLLs. commit 644c314b31339772a02e1b18743e53fa72f89167 Author: David Brooks Date: Sat Jun 25 16:24:42 2016 +0100 Get a clean compile under Windows. commit 438b7885a4d4c90e8a5ef2924851e3585b0c6ea0 Author: Alan Garny Date: Sat Jun 25 08:27:49 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit d64f856d576acd0403ee5cdaa20758322d09c67a Author: Alan Garny Date: Sat Jun 25 10:27:03 2016 +0400 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 4494387efd0aa114f1b12226ef91326960540aff Author: David Brooks Date: Fri Jun 24 17:17:51 2016 +0100 Fix typo. commit 4a92b017e19919c860563fc90f0dd7d91392004a Merge: b04d56343 48a758680 Author: David Brooks Date: Fri Jun 24 13:02:56 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit b04d563434c8b9abc39a185b83cd3c4cede9ca82 Author: David Brooks Date: Fri Jun 24 00:31:21 2016 +0100 Remove debugging. commit 5f473c28beddd45912569164f4ebb8ee9882ef19 Author: David Brooks Date: Fri Jun 24 00:12:04 2016 +0100 Add directory for git sub-module for OAuth library. commit 0b402cc5dc685ae2692eb918792a14a63d9e2337 Author: David Brooks Date: Thu Jun 23 23:39:45 2016 +0100 Tidy up handling of PMR repository messages in exposures window. commit f758e3884c3de26f63231f316dc4dbc1c8df044c Author: David Brooks Date: Thu Jun 23 23:38:03 2016 +0100 Use `PMR_PRODUCTION` compile time definition to select production or staging PMR instance (#969) commit 8b8377d52d39c8051d2f6b97231a30e0e9a139e6 Author: David Brooks Date: Thu Jun 23 23:35:41 2016 +0100 Tidy up comments and code layout. commit 97228c695a3ef2a40453cff2d86c88b54669539a Author: David Brooks Date: Thu Jun 23 23:34:29 2016 +0100 The widget sorts the workspace list into name order, not the repository. commit 136e0dafd624603775d8ca556797e7fd3af20c37 Author: David Brooks Date: Thu Jun 23 23:33:19 2016 +0100 Workspaces widget is working: expand/collapse tree view; our own context menu, tooltips, and mouse handling; layout tidy; distinguish our PMR workspaces from other clones; etc, etc (#969) commit 6b16340653c1e505e3e029b684e46f788913f5b4 Author: David Brooks Date: Thu Jun 23 23:24:30 2016 +0100 Declare workspace created/cloned slots in the workspace widgets class. commit 71ad3a93c2b4870aea40da6ac0cfafc318fd04f5 Author: David Brooks Date: Thu Jun 23 23:19:38 2016 +0100 Reorder code. commit 24ae8abf65da2dcff40d8b443ee1d5a86877c3a0 Author: David Brooks Date: Thu Jun 23 23:17:01 2016 +0100 Remove unused code and historical comments. commit 83b782041c783d98b29a3014ddc8ad4e066e3fe8 Author: David Brooks Date: Thu Jun 23 23:05:41 2016 +0100 Remember the names of folders that have workspaces in the plugin'\''s settings. commit 03e0b97631f44e7200256e074365be685389bb38 Author: David Brooks Date: Thu Jun 23 23:02:35 2016 +0100 Getting the default workspaces directory is now a function call. commit 267323e4b011444565ab4271877868acaa2955ed Author: David Brooks Date: Thu Jun 23 23:00:35 2016 +0100 Actually connect to the workspace created/cloned signals. commit ce40abe56e821ba3d051f9bc1486e47522b4dca2 Author: David Brooks Date: Thu Jun 23 22:58:46 2016 +0100 The workspace'\''s window handles warnings from its widget. commit f005091f530ab6b5826b51bc2783e72035106cec Author: David Brooks Date: Thu Jun 23 22:57:25 2016 +0100 Add option to scan the default workspace'\''s directory when refreshing the workspace display. commit c0dad9582f5947523d9f3fa0e35bb930f2b8f0e0 Author: David Brooks Date: Thu Jun 23 22:53:52 2016 +0100 Handle workspace created/cloned signals in the workspace'\''s widget, not the containing window. commit 46c5023b9cab80e92829fb221d56047a37a08618 Author: David Brooks Date: Thu Jun 23 22:50:21 2016 +0100 Add `Rescan workspace folders` to context menu of workspace window, tidy up toolbar layout, and use global icons. commit 6c6c70f52b67f32846db563489ce0357e3b8068b Author: David Brooks Date: Thu Jun 23 22:30:33 2016 +0100 Update PMR authenticated and unauthenticated icons. commit 8406aec1fb5fca9da6aa19dc12c3fc1b42e80a83 Author: David Brooks Date: Thu Jun 23 22:29:52 2016 +0100 By default emit an information message when PMR responds with a 403 (unauthorised) error. commit 505b8c388b2869c0988cfc3fbbc62d9d6a0b66a9 Author: David Brooks Date: Thu Jun 23 22:27:49 2016 +0100 Add `PmrRepository::getWorkspace` to get information about a workspace from PMR. commit 66a5e91784e8f3a49df9187f7b5ef60ae59f1b87 Author: David Brooks Date: Thu Jun 23 22:21:24 2016 +0100 Remove unused files. commit a848987679157b5443d6760faa18f9add3456cbc Author: David Brooks Date: Thu Jun 23 22:20:52 2016 +0100 Code clean up. commit a65d0717cae2a2713a410aeb7780c6bc648150a5 Author: David Brooks Date: Thu Jun 23 22:17:01 2016 +0100 Add methods to find a git repository'\''s `remote.origin.url` and to return the status of a repository and of files in it. commit 5b105a0db4d3ed83e9134b3954b7fb45329dddf9 Author: David Brooks Date: Thu Jun 23 22:12:54 2016 +0100 Directly use `Basic` authentication for git and don'\''t have a credentials callback. commit 6774cae7cf2f1676bb5c42a3c6028bac845bac8f Author: David Brooks Date: Thu Jun 23 10:57:44 2016 +0100 Flag a workspace as `owned` if it'\''s in `my-workspaces`. commit 6bc1b7c31c46a793b9c1344357a1545ceb1cf889 Author: Alan Garny Date: Thu Jun 23 13:35:09 2016 +1200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit (#1015). commit 48a7586804582e41de0df1d17085a05d8b34cdca Author: Alan Garny Date: Thu Jun 23 13:09:06 2016 +1200 Some minor cleaning up [ci skip]. commit 48b04b00448e687af693ac0fdcd76f8d04da69c5 Author: David Brooks Date: Wed Jun 22 22:21:08 2016 +0100 Display the progress of git operations in our busy widget. commit cf6b3bfadb5f1c9868860033ffca34a23c1363dc Author: David Brooks Date: Wed Jun 22 22:13:36 2016 +0100 Rationalise the names of some `PmrRepository` methods. commit 558b71135d35fa1063015110db0bb779ddf89db0 Author: David Brooks Date: Wed Jun 22 22:03:31 2016 +0100 Ensure we re-authenticate when switching to a new PMR instance. commit fa74ff51411c6f10def872fe3c63d3d846d188fc Author: David Brooks Date: Wed Jun 22 22:01:10 2016 +0100 Emit `unauthorised(QString)` if we receive a 403 response from PMR. commit 766712bd70858301cff01beb1a0e5f41988bed35 Author: David Brooks Date: Wed Jun 22 21:59:38 2016 +0100 Don'\''t show debug messages from OAuth library in debug builds of OpenCOR. commit c54b2f1ec48478931b2ed5aeb85e3d15333f2c73 Author: Alan Garny Date: Wed Jun 22 19:24:27 2016 +1200 CellML Text view: now allow the user to save the contents of the view to a text file if it cannot be saved as a CellML file (closes #998). commit d93e6d8a1c209b1cb22360935ad2f51270f4a231 Author: Alan Garny Date: Wed Jun 22 18:30:32 2016 +1200 Single Cell view: improved the loading/reloading of a file (closes #1017). commit 064ef6323c5443364b76f6dedec1bdab0b49d358 Author: Alan Garny Date: Wed Jun 22 17:13:33 2016 +1200 Slight update to the user documentation [ci skip]. commit e83fbf7697748d10e4b5b5932ed038dbca3c5172 Author: Alan Garny Date: Wed Jun 22 16:04:20 2016 +1200 Single Cell view: ensure that all model parameters are always listed (closes #1016). commit 7fa4d2401748130ab0213005ff2d60aa552ff82a Author: Alan Garny Date: Wed Jun 22 15:09:54 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed (#1016). Note that although our tests work fine with our current approach, it may not be fine for a model that only imports units. Something to be tested… commit 1ebd06709d56fe49f47f3a8f9c6faabbdfb31b7e Author: Alan Garny Date: Wed Jun 22 10:44:31 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed (#1016). commit 312ffbc016f0d88569e89fa9d3e8bf74d9f02de3 Author: Alan Garny Date: Wed Jun 22 09:03:53 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed (#1016). commit b5a54c865cbfeb2d5b0a7639ba851f56f231566b Author: Alan Garny Date: Tue Jun 21 20:57:25 2016 +1200 Some minor cleaning up. commit ff686df7aa6e5542e9d5124e730f6b8f940aefcb Author: Alan Garny Date: Tue Jun 21 20:49:08 2016 +1200 Some minor cleaning up [ci skip]. commit fb29751db4e0fa9cc98efc227f04d7b967516792 Author: Alan Garny Date: Tue Jun 21 20:31:55 2016 +1200 Single Cell view: only initialise our Graph Panels widget by adding a graph panel if none exists [ci skip]. Indeed, otherwise reloading a CellML file will automatically add a new graph panel… (!!) commit ab4d1fc7aed45f4d576562916d114e4d1bdd166e Author: Alan Garny Date: Tue Jun 21 17:11:40 2016 +1200 Slight update to the developer documentation [ci skip]. commit 9d54d5270b5415c828eb0c989d613fe94334291c Author: Alan Garny Date: Tue Jun 21 14:03:27 2016 +1200 Slight update to the downloads page [ci skip]. commit eb2829715958fa58859c3631739084d7f0419053 Author: Alan Garny Date: Tue Jun 21 13:50:12 2016 +1200 Single Cell view: the user can now synchronise the X and/or Y axes of all the graph panels (#1000). Addressed the case where we add a graph panel. Indeed, since the two actions were at the GraphPanelPlotWidget level, it means that they were not properly set (especially when one or the two axes had to be synchronised). So, now, we define those actions at the GraphPanelsWidget level. commit fad1840239760322fc3ef1b9c9d19239088745bf Author: Alan Garny Date: Tue Jun 21 12:50:42 2016 +1200 Single Cell view: fixed a problem with some model parameters being listed in the wrong component (closes #1014). commit 2e3d2d648ad2eb4ae2dd904ed7ae338569817279 Author: Alan Garny Date: Tue Jun 21 12:49:47 2016 +1200 Some minor cleaning up [ci skip]. commit b6ea2de89f8d3f4cc6beb664ab5e4fa37d7dd146 Author: Alan Garny Date: Mon Jun 20 19:42:09 2016 +1200 Slight updates to the downloads and what is new pages [ci skip]. commit 1e01a733337bdc4d68dfdcee564282810cd3cab7 Merge: c2870543e 6ad304fb5 Author: Alan Garny Date: Mon Jun 20 19:39:44 2016 +1200 Single Cell view: the user can now synchronise the X and/or Y axes of all the graph panels (closes #1000). commit 6ad304fb57d1f3079b2c3c43f09768cd72ac2d28 Author: Alan Garny Date: Mon Jun 20 19:20:23 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit 886ced9ece110f4da3e7c6ecfd17337a916719dd Author: Alan Garny Date: Mon Jun 20 17:30:12 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit 207e02164e61e25670ce1bca649d98c65ae26a66 Merge: 10833445a c2870543e Author: Alan Garny Date: Mon Jun 20 15:16:46 2016 +1200 Merge branch '\''master'\'' into issue1000. commit c2870543ec1a0966c745b01acf226ecf5b2977b1 Author: Alan Garny Date: Mon Jun 20 15:03:27 2016 +1200 Travis CI: slight update to our script to get the qtwebengine (formerly known as qt5.6) to build upon committing something [ci skip]. commit d30d11bca9a6cc25e3d8a30afbd5fa020135efba Author: Alan Garny Date: Mon Jun 20 14:58:39 2016 +1200 Single Cell view: the plotting of several graph panels is now much smoother (closes #1011). commit 2489bfc0d8727516bc1438f3760c0686e69dadc7 Author: Alan Garny Date: Mon Jun 20 14:58:15 2016 +1200 Single Cell view: the plotting of several graph panels is now much smoother (closes #1011). commit 42cb5577cb1db2d520955be5bff3a8ad06c2c942 Author: David Brooks Date: Sun Jun 19 20:55:41 2016 +0100 Delay requesting initial authentication status (and hence the list of workspaces) until windows have been fully resized (#969). commit 4fc71514d04aa28819eb32aff60080bc5922d2cf Author: David Brooks Date: Sun Jun 19 19:45:03 2016 +0100 Add missing include. commit 312d874be45e355cf0148d0b7cbd6a8c2552052c Author: David Brooks Date: Sun Jun 19 19:43:37 2016 +0100 Put a border around the workspaces'\'' widget (#969) commit 9fee646741f592ce5d6d8fa131b884a4dcfd49e5 Author: David Brooks Date: Sun Jun 19 19:40:03 2016 +0100 Add a "Refresh" icon to workspaces'\'' window and clean up initialisation code (#969) commit 59b837a5453183bd3f59a674f342779e8b30bf1c Author: David Brooks Date: Sun Jun 19 19:36:40 2016 +0100 Show repository messages and status in workspaces'\'' window (#969) commit 3f73ba5226f5ff532d2fbd57922a7e79db6e6f93 Author: David Brooks Date: Sun Jun 19 19:32:55 2016 +0100 Correctly display/set the path in which to clone a newly created workspace (#969) commit 9c401e7bbbb2ed564bc6246e060005a8a6b1b92f Author: David Brooks Date: Sun Jun 19 19:28:33 2016 +0100 Emit `finished()` when we have finished processing a repository response (#969) commit 55dc8b6301f2ac7330353f0dbc3b071c08b264dc Author: David Brooks Date: Sun Jun 19 19:14:48 2016 +0100 Get git authentication working and clone newly created workspace (#969) commit 10833445a31be456dc4b927f80e9946b3e783a3b Author: Alan Garny Date: Sun Jun 19 11:59:56 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit dc697b090c9f0b1072f7fef49bf75e5e57ae045e Author: Alan Garny Date: Sun Jun 19 11:31:01 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit aa5961adc49116927ec9f20c6e39284f6ad4a10c Merge: 24e60f0a9 561535cac Author: Alan Garny Date: Sun Jun 19 11:29:41 2016 +1200 Merge branch '\''master'\'' into issue1000. commit 561535cac43f32d643be0e14cb89e50a84890c03 Author: Alan Garny Date: Sun Jun 19 11:29:17 2016 +1200 Slight update to the user documentation (#997) [ci skip]. commit 24e60f0a920eb9a2cd439c11190c0b710a1a8dfb Author: Alan Garny Date: Sun Jun 19 11:16:03 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit a1607e2f468e80b5b1103d29278b69d2c58f5600 Author: Alan Garny Date: Sun Jun 19 10:31:32 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels (#1000). commit a4ea702ba658ab334f6c12c247125a6ed2613422 Author: Alan Garny Date: Sat Jun 18 21:07:11 2016 +1200 Single Cell view: slight improvements to the way we allow the user to manually define the axes of a graph panel (#997). commit 0e6609534fadc44029b9a1cb6a25c7091dcc114f Author: Alan Garny Date: Sat Jun 18 16:41:54 2016 +1200 Slight updates to our downloads and what is new pages [ci skip]. commit 9d932f2efdfd80f7ac14077b5762f409e01b5be2 Merge: b3b2431cd 47cdfbff9 Author: Alan Garny Date: Sat Jun 18 16:36:32 2016 +1200 Single Cell view: now allow the user to manually define the axes of a graph panel (closes #997). commit 47cdfbff9f04776d7d9dcb118b5139ff4d699223 Author: Alan Garny Date: Sat Jun 18 16:17:54 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel (#997). commit b51adf34710d7196de3adf8659953b5ee162cf7b Author: Alan Garny Date: Sat Jun 18 16:09:39 2016 +1200 Some minor cleaning up [ci skip]. commit 807288998f4d88143afe4bc900230633651ad288 Author: Alan Garny Date: Sat Jun 18 15:33:27 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel (#997). commit 1306eddbdf00fa042ec63ddcf25222a6d820e009 Author: Alan Garny Date: Sat Jun 18 14:43:20 2016 +1200 Some minor cleaning up [ci skip]. commit 741bc40731e81e60479e5583604a3ac9bb82efbc Merge: db88be09b b3b2431cd Author: Alan Garny Date: Sat Jun 18 14:25:25 2016 +1200 Merge branch '\''master'\'' into issue997. commit b3b2431cdc90b6e967693b9ad8d207675fdd424a Author: Alan Garny Date: Sat Jun 18 14:25:07 2016 +1200 Some minor cleaning up [ci skip]. commit ebd3f0aee6d69d8044b3c7c9acde941e1489b406 Author: Alan Garny Date: Sat Jun 18 14:19:28 2016 +1200 Some minor cleaning up [ci skip]. commit db88be09bc2a8ebff1138b1f02eaf6a89bbf2e23 Author: Alan Garny Date: Sat Jun 18 14:09:15 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel (#997). commit 7e0e3606d17f6a5749125a8d00c880f63c6e987d Author: Alan Garny Date: Sat Jun 18 12:21:46 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel (#997). commit 8cfde79f7ba358a33e8c5218a9c710e8398e6976 Merge: dc9c94e9c e33dcf694 Author: Alan Garny Date: Sat Jun 18 12:11:03 2016 +1200 Merge branch '\''master'\'' into issue997. commit e33dcf694cf3a5f19cc89977754bb3961816f3e1 Author: Alan Garny Date: Sat Jun 18 12:10:06 2016 +1200 Some minor cleaning up [ci skip]. commit dc9c94e9c943af2d5d00ade19cb4d0c082baa04e Author: Alan Garny Date: Sat Jun 18 11:59:21 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel (#997). commit b4b0e25d5d1b402d98be5452e2674e36c5d495e6 Author: Alan Garny Date: Sat Jun 18 11:48:39 2016 +1200 Some minor cleaning up [ci skip]. commit e321e51dff038a9a6c1a599887f55fd98cfd0159 Author: Alan Garny Date: Sat Jun 18 10:47:35 2016 +1200 Slight update to our prerequisites page [ci skip]. commit 7d5ea7606ffa101ebeff3be8dddf7c6467cdd534 Author: David Brooks Date: Fri Jun 17 22:31:40 2016 +0100 Use correct signature for `workspaceCloned` signal/slot commit 00747d7c15eb79582f743d7643779e5d3077fffc Author: David Brooks Date: Fri Jun 17 20:26:40 2016 +0100 `Core::WebViewWidget` is now `WebViewerWidget::WebViewerWidget` commit 572e858646052cdd44a3efd1d3d34444fba334fa Author: David Brooks Date: Fri Jun 17 20:03:27 2016 +0100 Use global `Oxygen` images (#982) commit 7a973e64740489e97025c210806494860e3371b1 Author: David Brooks Date: Fri Jun 17 19:38:23 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 40d183a2b6dab8d6babd756111e6db9f3efff2c1 Author: David Brooks Date: Fri Jun 17 18:29:26 2016 +0100 Implement workspace creation (#969) commit 3a2d74d6af534b4eff8f776e9b410c0f4b942260 Author: David Brooks Date: Fri Jun 17 18:27:11 2016 +0100 Remove unused code. commit 3102e9cefd87f567058646c2241a8c79e2e43cfe Author: David Brooks Date: Fri Jun 17 18:26:37 2016 +0100 Use a separate thread to clone a workspace (#848) commit fcb8b97eb9083132f4cf8b1b4aad8124fb493ebf Author: David Brooks Date: Fri Jun 17 18:22:36 2016 +0100 Use new methods in `PmrRepository` to request exposures and workspaces (#969) commit 76dd94f4099f7dd4b5cf5f3a4282c15a30089c40 Author: David Brooks Date: Fri Jun 17 18:00:49 2016 +0100 A global `PmrRepository` instance means error messages can go to the wrong plugin, so have an instance per plugin. commit 0d2e54109deae470eebe1703e58068ec6bc29b65 Author: David Brooks Date: Fri Jun 17 17:57:44 2016 +0100 Separate out network access and responses from `PmrRepository` class so that it'\''s easier to add new requests/responses for workspace management (#969). commit d565197e4ef80d00b0d129fc4fa916f5d340a175 Author: Alan Garny Date: Fri Jun 17 20:27:06 2016 +1200 Some minor cleaning up [ci skip]. commit 856c27787eb43421c15902b3321dd7d81b5420e9 Author: Alan Garny Date: Fri Jun 17 10:06:48 2016 +0200 Get OpenCOR to build on Windows (related to issue #1004). This should have been checked/tested before, I know... commit 6128c46a7473d81888575b5999e5c44d5cdc192c Author: Alan Garny Date: Fri Jun 17 17:33:54 2016 +1200 Slight update to our test SED-ML file and COMBINE archive [ci skip]. commit a583a684f47c793b505186016a07e44d177ee35d Author: Alan Garny Date: Fri Jun 17 17:33:05 2016 +1200 Some minor cleaning up [ci skip]. Avoids a crash when a CellML file, SED-ML file or COMBINE archive is invalid. commit 69c9e7f14378e271d8972b852c77441d90ec5d09 Author: Alan Garny Date: Fri Jun 17 16:04:07 2016 +1200 Slight update to our downloads page [ci skip]. commit 761890195cb63f9ac9a73c77071d624c5de28233 Merge: a94c48276 c36771c77 Author: Alan Garny Date: Fri Jun 17 15:56:22 2016 +1200 Merged and renamed some of our plugins (closes #1004). commit c36771c771d40ceefde771a9b69919241b172ca1 Author: Alan Garny Date: Fri Jun 17 15:38:01 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 17884448505b6d66dc6f936625b3b00c89033bf3 Author: Alan Garny Date: Fri Jun 17 15:11:00 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 1f050b654766b0d3f4cfa045cf0d703e44a9f620 Author: Alan Garny Date: Fri Jun 17 14:57:51 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit df44fadb2e0443197892dfe14c934f10187abd8b Author: Alan Garny Date: Fri Jun 17 13:48:57 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit aec4ea142dbd1f1cf26c9cf9ec72188d99c904aa Author: Alan Garny Date: Fri Jun 17 13:47:06 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit b80d639dc3ae642b2ef7884cd9161db9a65370a9 Author: Alan Garny Date: Fri Jun 17 12:10:30 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 17ccc0a19abc0d3d5ab133e99ef772c16cabe454 Author: Alan Garny Date: Fri Jun 17 12:04:51 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 3c3634b108dbc27b19ce068ee9cf0339a72f1d55 Author: Alan Garny Date: Fri Jun 17 11:51:49 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 48664175ad2dff159825309a801508060eba929e Author: Alan Garny Date: Fri Jun 17 11:43:28 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 225ec869e5c46cc56a03e6d9101e89819e0a4385 Author: Alan Garny Date: Fri Jun 17 11:20:20 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 984ff6ae58fd9ed5088e40bfa8e767c9da391491 Author: Alan Garny Date: Fri Jun 17 11:03:38 2016 +1200 Some minor cleaning up [ci skip]. commit b02cf79e4248de9c5c2d07aa20d61a35234f6f75 Author: Alan Garny Date: Fri Jun 17 10:18:20 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit c1525653ee48a8ea07b30340272d9ef473356dae Author: Alan Garny Date: Fri Jun 17 10:12:13 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 2691dd0fd7f76ec930e03c8cafc2fad0e2b27889 Author: Alan Garny Date: Thu Jun 16 19:55:23 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 334c80ec46ffbe2a7aa932123359badf87063311 Author: Alan Garny Date: Thu Jun 16 19:28:59 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 7ebaedd34dcde9c7a4164333904bbe564d3f538c Author: Alan Garny Date: Thu Jun 16 18:27:06 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit e754c418ae6ddad2c4fa32678628ecbbd9940a25 Author: Alan Garny Date: Thu Jun 16 18:24:53 2016 +1200 Some minor cleaning up [ci skip]. commit 01bca387a5ec64a7a56bb325e26b48d20f9b222b Author: Alan Garny Date: Thu Jun 16 16:51:36 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit bbf69d690adcaebf106a91d53226b8895d5dabd1 Author: Alan Garny Date: Thu Jun 16 16:37:56 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit 1ca2cca88f9ed72d1f6708637c4e2335c13f25cc Author: Alan Garny Date: Thu Jun 16 15:25:14 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit e3eee558faebf8aaf61a7ec42eeb6669ce412cf1 Author: Alan Garny Date: Thu Jun 16 15:24:19 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit cbe47c09324c67e7b4c1bf30affc5402d7e8d0c9 Author: Alan Garny Date: Thu Jun 16 15:14:53 2016 +1200 Some minor cleaning up [ci skip]. commit b5e3630932e6f4a87c87b87e2e5d2986e2068464 Author: Alan Garny Date: Thu Jun 16 15:06:48 2016 +1200 Some minor cleaning up [ci skip]. commit 81a5c5b91ff46e39b751626c315a35e409ab391a Merge: 43326a0aa a94c48276 Author: Alan Garny Date: Thu Jun 16 14:51:23 2016 +1200 Merge branch '\''master'\'' into issue1004. commit a94c48276668beccb88357bc64d8df4334743388 Author: Alan Garny Date: Thu Jun 16 14:50:45 2016 +1200 Single Cell view: now use better colours/symbols in the Parameters window (closes #634). commit 43326a0aa464149d3764b1ba790c15bb1592d5c3 Author: Alan Garny Date: Thu Jun 16 09:41:32 2016 +1200 Some work on merging and renaming some of our plugins (#1004). commit ec70712fce1307d37fcb6d8e15a44a148be965d1 Author: Alan Garny Date: Wed Jun 15 18:16:42 2016 +1200 Some minor cleaning up [ci skip]. commit aae44be6f884ae219738633753d5e5670c4995ef Author: Alan Garny Date: Wed Jun 15 17:57:27 2016 +1200 Some minor cleaning up [ci skip]. commit b9d9d71e16d7426700190820383a1f81fbe6eb1a Author: Alan Garny Date: Wed Jun 15 16:46:44 2016 +1200 Some minor cleaning up [ci skip]. commit 1c744bd9191051c96a7336ae9bd680293f607604 Author: Alan Garny Date: Wed Jun 15 16:42:04 2016 +1200 Some minor cleaning up [ci skip]. commit 5aaa587ce090d4ad8c5eeef314cf9953407ec33d Author: Alan Garny Date: Wed Jun 15 16:23:13 2016 +1200 Some minor cleaning up [ci skip]. commit d0cd2f04b223a14c6b4a44531886488689ca0769 Author: Alan Garny Date: Wed Jun 15 16:23:00 2016 +1200 Some minor cleaning up [ci skip]. commit fc4f737dc8408f9333f02a10ddb317cf96ba7ffe Author: Alan Garny Date: Wed Jun 15 15:36:39 2016 +1200 Some minor cleaning up [ci skip]. commit 2e63c84d16f4bd5e8437e87917b236b3c95bc10c Author: Alan Garny Date: Wed Jun 15 15:30:39 2016 +1200 Some minor cleaning up [ci skip]. commit a471dfb6aaa3f26ae55ace2d18a34bafe3f59fab Author: Alan Garny Date: Wed Jun 15 14:10:56 2016 +1200 Some minor cleaning up [ci skip]. commit 1539ddba15d2c003b6e677f64cc95d95bfd54433 Author: Alan Garny Date: Wed Jun 15 14:06:26 2016 +1200 Some minor cleaning up [ci skip]. commit 44e843ecaf79273a84f3af7d77d9976628dff579 Author: Alan Garny Date: Wed Jun 15 13:52:55 2016 +1200 Some minor cleaning up [ci skip]. commit a754409dae0431d6ff2554bf32b9d027276c0fcc Author: Alan Garny Date: Wed Jun 15 13:31:21 2016 +1200 Some minor cleaning up [ci skip]. commit 8edbe41badda120e23b2e023cfa078668b76a47d Author: Alan Garny Date: Wed Jun 15 13:30:55 2016 +1200 Some minor cleaning up [ci skip]. commit 41e3e032a2541b84877e25763686113c156fbe19 Author: Alan Garny Date: Wed Jun 15 11:59:44 2016 +1200 Some minor cleaning up [ci skip]. commit f217a6b091b625c6dc45682c934de59641a08cd2 Merge: fdbd4c341 a832be444 Author: Alan Garny Date: Wed Jun 15 11:16:02 2016 +1200 Qwt library: upgraded to version 6.1.3 (closes #1002). commit a832be444cf8264827aa516e59b6b0609a7ffeda Author: Alan Garny Date: Wed Jun 15 11:14:17 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 (#1002). commit 3e1f9ab158bc8b6d6c6e32aedd9ca72dc6e2b0d7 Author: Alan Garny Date: Wed Jun 15 10:46:13 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 (#1002). commit 3e9a36f5cd4491ecc05e6e8651948aa02c782ebc Author: Alan Garny Date: Wed Jun 15 10:31:40 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 (#1002). commit b0746070b4146606f2b4ed1389c08b4cbee25695 Author: Alan Garny Date: Wed Jun 15 10:29:22 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 (#1002). commit fdbd4c3411f4f6965813abfddf7d57bb026896d3 Author: Alan Garny Date: Wed Jun 15 10:24:44 2016 +1200 jQuery: upgraded to version 3.0.0 (closes #1001). commit b3d23f842156c66a32024d61a9bb2db8c56e0bfb Author: Alan Garny Date: Tue Jun 14 08:39:56 2016 +0200 Only exporting what is needed. commit aa839c50388be5ba96bcc67e50c65cd76d6a74fd Author: Alan Garny Date: Tue Jun 14 18:28:07 2016 +1200 Only exporting what is needed. commit 175d1743434611272d92ca02054dfb10afe2da6f Author: Alan Garny Date: Tue Jun 14 17:39:06 2016 +1200 Slight updates to the what is new and downloads pages [ci skip]. commit 46e8065592d67ba70f208e6cdbeb88395d596d53 Merge: e574f5482 2289adbc4 Author: Alan Garny Date: Tue Jun 14 17:38:16 2016 +1200 Data store exporter: now run in its own thread (closes #849). commit 2289adbc44f7e13912205ed989fd6cedf2961b1d Author: Alan Garny Date: Tue Jun 14 17:21:19 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit ea18c6b4f595f86c205438f9c411dbf8357231be Author: Alan Garny Date: Tue Jun 14 17:19:54 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit dddead392e0a22f9f7dd37a410f7947d0f370ccf Author: Alan Garny Date: Tue Jun 14 15:19:18 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit ae494bb3bc90662f50f19f74c2d0ab805a4d336b Author: Alan Garny Date: Tue Jun 14 14:29:44 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit 4e01ab141f166ff7d7fed94a85ba3e2de3371adc Author: Alan Garny Date: Tue Jun 14 14:09:40 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit 9c38d204f72461a8d978b6d93ff9265c1e8e107e Author: Alan Garny Date: Tue Jun 14 12:01:47 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit 9dda52dc410a53a90d8c2bbc2ee5111a140c4a54 Author: Alan Garny Date: Tue Jun 14 11:36:03 2016 +1200 Data store exporter: some work on making it run in its own thread (#849). commit 6623f364db31fcb37634a0ace73761464253a196 Author: Alan Garny Date: Mon Jun 13 16:28:54 2016 +1200 BioSignalML: some work on making the code style more in line with the rest of the OpenCOR code (#856). commit 20bee1576a86a713410a46dcc164626257e1466b Merge: f5f362325 e574f5482 Author: Alan Garny Date: Mon Jun 13 16:15:46 2016 +1200 Merge branch '\''master'\'' into issue856. commit e574f5482edfe3d35473f4d8daf7ca1c05d382b6 Author: Alan Garny Date: Mon Jun 13 16:08:55 2016 +1200 Text-based editing views: fixed a small problem with losing the focus and not being able to track changes to a file after having reloaded another file that depends on it (closes #996). commit dcd9d3232f451cd7bd43a82f995aba0560b52957 Author: Alan Garny Date: Mon Jun 13 15:57:39 2016 +1200 Some minor improvement [ci skip]. commit 86f55f363465c29e821db906f4e562947a89a7d1 Author: Alan Garny Date: Mon Jun 13 14:46:24 2016 +1200 Some minor cleaning up [ci skip]. commit b671de2076dc89be494c6349fb672a333f7fc5f9 Author: Alan Garny Date: Mon Jun 13 13:50:08 2016 +1200 Some minor cleaning up [ci skip]. commit 90c0f82d7800b59b06c11cfb722caaf3d006e101 Author: Alan Garny Date: Mon Jun 13 13:21:58 2016 +1200 Some minor cleaning up [ci skip]. commit f5f3623254b28f3e161e4ebcfc4b919a792425e5 Merge: f814f8cf1 dcfc353bd Author: Alan Garny Date: Mon Jun 13 10:19:55 2016 +1200 Merge branch '\''master'\'' into issue856. commit dcfc353bd086fe7cdd7f4c35c4b8f2556bcb8ae6 Author: Alan Garny Date: Mon Jun 13 10:19:30 2016 +1200 CellML support: can now detect a VOI no matter where it is defined in a model (closes #995). commit f814f8cf161ee0bb9102cb0e46ca565d73e0ee07 Author: Alan Garny Date: Mon Jun 13 10:17:12 2016 +1200 CellML support: a VOI can now be detected no matter where it is defined in a model (closes #995). commit 297c44f3d24282b500ed99f2183c3d101e065003 Author: Alan Garny Date: Sat Jun 11 17:00:50 2016 +1200 BioSignalML: some work on making the code style more in line with the rest of the OpenCOR code (#856). commit 8676aed546f213ecda6531151f0dddf706d5184e Author: Alan Garny Date: Sat Jun 11 16:44:20 2016 +1200 Some minor cleaning up [ci skip]. commit 289b92b4ac05a16a6546ff2854907c3abb39dab8 Author: Alan Garny Date: Sat Jun 11 16:20:00 2016 +1200 Have our various plugins properly reference their plugin dependencies. commit fb2b709594550fab99c7524157c5327e92a68314 Author: Alan Garny Date: Sat Jun 11 12:05:15 2016 +1200 Slight update to the developer documentation [ci skip]. commit 4d221dd61d54f8421a61a579981d837d080fc2cd Author: Alan Garny Date: Sat Jun 11 12:01:14 2016 +1200 QScintilla: applied official patch for (Mac) OS X issue (closes #994). commit 419b70681c07c83729a582f62cdce688019c144c Author: Alan Garny Date: Sat Jun 11 11:51:41 2016 +1200 QScintilla: some work on applying official patch for (Mac) OS X issue (#994). commit b8c03bd271c8bde84cc6ed806249f2a6031a81b5 Author: Alan Garny Date: Sat Jun 11 10:51:53 2016 +1200 Slight updates to the downloads page [ci skip]. commit 147199a1a6576c004b9ba600eb96cf8ab49a0611 Author: Alan Garny Date: Sat Jun 11 00:22:24 2016 +0200 CellML Text view: allow the import / export of the CellML Text format from / to CellML (#992). Make sure that this builds with MSVC on Windows. commit 7849cc37a9845f07acac61096755c6141258171c Merge: 1cce1ae3a 4e892e4e7 Author: Alan Garny Date: Sat Jun 11 09:58:01 2016 +1200 CellML Text view: allow the import / export of the CellML Text format from / to CellML (closes #992). commit 4e892e4e713e4e04b18685920a431858470fc16d Author: Alan Garny Date: Sat Jun 11 09:36:29 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format (#992). commit 0405c2bbd8e870bf7a8052de62cb3cdac977a7ec Author: Alan Garny Date: Sat Jun 11 09:32:44 2016 +1200 Slight improvement to the output of plugins'\'' help commands on the command line [ci skip]. commit 4a656df19581ce4fd347196941be6f780226437f Author: David Brooks Date: Fri Jun 10 17:18:32 2016 +0100 Undo temporary code... commit 398862eee92e455f3da85188960f178ea75dd5d0 Author: David Brooks Date: Fri Jun 10 17:18:14 2016 +0100 We mustn'\''t delete contents of `PmrExposureList` and `PmrWorkspaceList` as other plugins may be using them... commit b6ef487d0745818b8bc8aeba42bbc078622f662a Author: David Brooks Date: Fri Jun 10 16:53:55 2016 +0100 `PmrExposures` has been renamed to `PmrExposureList`. commit a800301e4eb6b44aaa100fda2ff3c7deeea8b00b Author: David Brooks Date: Fri Jun 10 16:53:01 2016 +0100 Use `Core::globalInstance()` to provide a `PmrRepository` singleton. commit be189b29fa94edae81b1d2294118089862d5595e Author: David Brooks Date: Fri Jun 10 16:50:29 2016 +0100 Tidying up: a temporary file was committed... commit 76dee31747c7dd862e39197c852237a1a4b59ae0 Author: David Brooks Date: Fri Jun 10 16:48:07 2016 +0100 Use a unique name for PMRWindow'\''s HTML template. commit 8264ef8bad18a8f3d6dca5b84da9253449fa1a03 Author: David Brooks Date: Fri Jun 10 16:47:13 2016 +0100 Tidying up: make `PmrExposure` a `QObject` and rename `PmrExposures` to `PmrExposureList`. commit f3a67971fe5a82b4698db5ca0b57e0e3f2c8cc49 Author: David Brooks Date: Fri Jun 10 16:41:47 2016 +0100 More work on PMR Workspaces window (#969) commit 97ce809bb3edaea2bfa173582145a201a210aa89 Author: Alan Garny Date: Fri Jun 10 18:19:55 2016 +1200 Some minor cleaning up [ci skip]. commit bc4dbe25709062c49581bc78d31a23a58d8aeea0 Author: Alan Garny Date: Fri Jun 10 18:19:44 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format (#992). commit a789d224c1aa1303a1ef9062e5ea8d7574f4c815 Author: Alan Garny Date: Fri Jun 10 17:54:49 2016 +1200 Some minor cleaning up [ci skip]. commit 7436bbb63af2aa6120c6c05be83fd734ac0adac3 Author: Alan Garny Date: Fri Jun 10 17:40:43 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format (#992). commit 1cce1ae3ad58f68872b4a12dccc914315e5491d0 Author: Alan Garny Date: Fri Jun 10 17:39:13 2016 +1200 Some minor cleaning up [ci skip]. commit c89a390b19866dc6eba501758c6cf56cff908aa4 Author: Alan Garny Date: Fri Jun 10 17:19:55 2016 +1200 CellML tools: don'\''t ask for an output file when exporting from the command line (closes #991). commit cb4c3aa0f959f06a8da7e6cbbc571c3996958edb Author: Alan Garny Date: Fri Jun 10 16:30:53 2016 +1200 Some minor cleaning up [ci skip]. commit 6b1de06a9d38c8756b301ef44f0f94813ba303c3 Merge: 0786f68e6 494e7eca5 Author: Alan Garny Date: Fri Jun 10 15:40:29 2016 +1200 New third party binaries. commit 494e7eca55357651617d59c30aa123218a433b95 Author: Alan Garny Date: Fri Jun 10 14:36:50 2016 +1200 Generated new third-party binaries. commit 0786f68e6e7085eba56a3cb1489244a9cf86e891 Author: Alan Garny Date: Thu Jun 9 18:30:42 2016 +1200 Oops, forgot to unedited our main CMakeLists.txt file [ci skip]. commit 99f9cedd89d676934c0dec10d372065d73a8a5d1 Author: Alan Garny Date: Thu Jun 9 18:03:10 2016 +1200 Some work on generating new third-party binaries. commit bd699d7911dc8f9087af7e5320748efd5a9c71df Author: Alan Garny Date: Thu Jun 9 17:52:16 2016 +1200 Slight changes to the plugin descriptions [ci skip]. commit ced9eab207fd5ca8963be8c0b6b69991eb5b331d Author: Alan Garny Date: Thu Jun 9 15:32:50 2016 +1200 Some minor cleaning up [ci skip]. commit 7165c044cf2d1bcaa4c2681c2fe29aad2dd80934 Author: Alan Garny Date: Thu Jun 9 11:59:07 2016 +1200 New snapshots. commit 48dea519a5d7ab432c393e9680b3e51dc018369f Author: Alan Garny Date: Thu Jun 9 11:38:10 2016 +1200 CellML Text view: fixed a small problem with the serialising of numbers with an exponent (closes #989). Oops, forgot to update our CellML Text view tests! commit 250e658df795ae305d24592920bd3a7e7ac06b89 Author: Alan Garny Date: Thu Jun 9 10:24:38 2016 +1200 CellML Text view: fixed a small problem with the serialising of numbers with an exponent (closes #989). commit 7e1a6abbac9399d508f8a24d9ba90fb0e93da055 Author: Alan Garny Date: Thu Jun 9 10:20:03 2016 +1200 Some minor cleaning up [ci skip]. commit 50323871de00cbe330ab8a95a05ac95841f1a242 Author: Alan Garny Date: Thu Jun 9 09:10:37 2016 +1200 Slight updates to the user documentation and downloads page [ci skip]. commit 212926d25201c7eb2ff92432b5271d1d08793e5e Author: Alan Garny Date: Wed Jun 8 18:07:33 2016 +1200 MathML viewer: fixed a small problem with numbers with an exponent not being properly rendered (closes #988). commit b574b68f96b3cab118e5177ff2df5fb6d4b75efe Author: Alan Garny Date: Wed Jun 8 16:44:52 2016 +1200 Some minor cleaning up [ci skip]. commit 1d80a502b6bcb485051a85a648506f7d2b142af7 Author: Alan Garny Date: Wed Jun 8 16:24:57 2016 +1200 CellML Text view: fixed a small problem with not all the metadata being serialised back (closes #987). commit 5f489b5d6e2ff72c11b6899395ba9c71844c2ada Author: Alan Garny Date: Wed Jun 8 16:20:20 2016 +1200 Some minor cleaning up [ci skip]. commit fb45598f907b670a803af286e84a0ffa961af04e Author: Alan Garny Date: Wed Jun 8 15:22:00 2016 +1200 Single Cell view: improve the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980) [ci skip]. Slight refactoring of commit 0e25c04. commit 63a5b14670f4e172d387bac3ee85d39a3a5c44a0 Author: Alan Garny Date: Wed Jun 8 14:50:29 2016 +1200 Some minor cleaning up [ci skip]. commit 0e25c04d1bd28216d936c1a73579aaf018c793e7 Author: Alan Garny Date: Wed Jun 8 14:45:53 2016 +1200 Single Cell view: improve the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980) [ci skip]. Oops, we were always emitting a signal when setAxes() was called while we should only have emitted it when setAxes() was called as a result of a user interaction. commit 84a6c75cf6d8e1339d83c3571ed70f4e1c9f0c89 Author: Alan Garny Date: Wed Jun 8 14:31:21 2016 +1200 Some minor cleaning up [ci skip]. commit 5ea3c7d379a00bf835b2623a8fac5360cb865041 Author: Alan Garny Date: Wed Jun 8 14:05:05 2016 +1200 Some minor cleaning up [ci skip]. commit 819b8b4ebbd75f7d06ce2879f403e41ec8d8263d Author: Alan Garny Date: Wed Jun 8 09:27:39 2016 +1200 General: a plugin'\''s resources should specify the '\''prefix'\'' attribute to avoid name conflicts #981 [ci skip]. Had forgotten to update the ‘link’ to the OpenCOR logo for the central widget. commit 6ea8be8248c1d9f03de660e197f8f8ec945271d6 Author: Alan Garny Date: Mon Jun 6 21:53:44 2016 +1200 Slight update to the user documentation [ci skip]. commit bea75a1460c002fce6e702a3d8d34be3ebee8810 Author: Alan Garny Date: Mon Jun 6 20:30:20 2016 +1200 Slight update to the user documentation [ci skip]. commit db932856c51ba22a61d2b481584770734c425f84 Merge: f06e0cb50 2b8cdad35 Author: Alan Garny Date: Fri Jun 3 19:29:47 2016 +1200 General: a plugin'\''s resources now specify the '\''prefix'\'' attribute to avoid name conflicts (closes #981). commit f06e0cb5005cac14f3b42609e1535dff468e2ba4 Author: Alan Garny Date: Fri Jun 3 19:14:55 2016 +1200 Slight update to our downloads page [ci skip]. commit 2b8cdad356ff4202c51f6730fefd59a3fbbe0116 Author: Alan Garny Date: Fri Jun 3 19:09:10 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 423c68d89dc3c9afe1a0199fb8d1b059120e5455 Author: Alan Garny Date: Fri Jun 3 19:03:42 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 4f583c9b401c2f937d9df289209f76d3c9719eb1 Author: Alan Garny Date: Fri Jun 3 18:54:25 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit d6ef1c992157c422a6ab038d0303dc06d7827a46 Author: Alan Garny Date: Fri Jun 3 18:52:36 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 753a69a2d1e2410f2232e7334a23c01b626d4ff6 Author: Alan Garny Date: Fri Jun 3 18:40:45 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 4e3aec1d834a718e772eebfde9b2b73bf54c4409 Author: Alan Garny Date: Fri Jun 3 18:40:24 2016 +1200 Some minor cleaning up [ci skip]. commit 3a6feca8c131dd62f291fa6cdd1eab8898c8f08f Author: Alan Garny Date: Fri Jun 3 18:34:32 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 98cba780259f22a29008bebde499cf1ad47bcbf6 Author: Alan Garny Date: Fri Jun 3 18:33:29 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 71f7b26e0fa5fc439a662f023bb14fbddf9b4ed3 Author: Alan Garny Date: Fri Jun 3 18:32:06 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit 97f003caaddda5ef02b762b336004c296072c148 Author: Alan Garny Date: Fri Jun 3 18:28:42 2016 +1200 General: some work on having a plugin'\''s resources specifying the '\''prefix'\'' attribute to avoid name conflicts (#981). commit ca4ddeaf51c3c8631a50e756e55799edc264f283 Merge: 3d71f7d26 34f420212 Author: Alan Garny Date: Fri Jun 3 16:40:37 2016 +1200 General: now centralise the Oxygen library images (closes #982). commit 34f420212e592839b48072d4135f843f8b165a67 Author: Alan Garny Date: Fri Jun 3 16:38:44 2016 +1200 Some minor cleaning up [ci skip]. commit 6267d311d6ffd8c4797ee7fe5a6a984d3cec83d3 Author: Alan Garny Date: Fri Jun 3 16:36:51 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 2b459258c858eed40a26395a47a62381ff7bfa50 Author: Alan Garny Date: Fri Jun 3 16:35:55 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 4e08e5b66767b2bc2cbc1830917d5937034c6b8c Author: Alan Garny Date: Fri Jun 3 16:34:42 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit d0631d330e335da815315d57e50c0ede787edda1 Author: Alan Garny Date: Fri Jun 3 16:32:17 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 0fde541530943001528af69c088a03528243f1f1 Author: Alan Garny Date: Fri Jun 3 16:25:46 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit b8f83fe12c07baec3a906094133c401c534fd357 Author: Alan Garny Date: Fri Jun 3 16:23:16 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit cb9ae9b9885af79cc5749ef31ea3a5ae2ed196fe Author: Alan Garny Date: Fri Jun 3 16:20:25 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit fba7d510c3c06a35d5dd24618d2162d5f2490a13 Author: Alan Garny Date: Fri Jun 3 16:18:40 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 0894be565ab07e6d9da53494c29334fd8824fe03 Author: Alan Garny Date: Fri Jun 3 16:15:57 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 2711a91277e37d38b4956e47570a2ab22fd9ce81 Author: Alan Garny Date: Fri Jun 3 16:13:59 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 8957069694e144358fa4a2a7ee267a5c82f80851 Author: Alan Garny Date: Fri Jun 3 16:13:44 2016 +1200 Some minor cleaning up [ci skip]. commit eaef06904de361b2048e17b77d5989aab9e55b2c Author: Alan Garny Date: Fri Jun 3 16:10:15 2016 +1200 Some minor cleaning up [ci skip]. commit b457d9e235d7fff89718bb6f54addf0256080197 Author: Alan Garny Date: Fri Jun 3 16:09:18 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 2d86fa15c58347f7ecf4c68c7e9f24f1bba2b169 Author: Alan Garny Date: Fri Jun 3 16:06:49 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 1914a70304972cd15be64b4867b0d5b1db098b12 Author: Alan Garny Date: Fri Jun 3 16:00:46 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 235d45f750eda5e70052b56e087518bae5f40865 Author: Alan Garny Date: Fri Jun 3 15:53:39 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 28efc2ff006a9874e2fed9e981afd8ef3ac8cb5e Author: Alan Garny Date: Fri Jun 3 15:53:16 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 45120e4206608771baf01d6c4cf25b26d3203a58 Merge: 0963fc785 3d71f7d26 Author: Alan Garny Date: Fri Jun 3 15:40:28 2016 +1200 Merge branch '\''master'\'' into issue982. commit 3d71f7d2690e780f629b86533111e959c63dc34c Author: Alan Garny Date: Fri Jun 3 15:40:15 2016 +1200 Slight updates to the developer documentation [ci skip]. commit 0963fc78521c55a9028c4c928d14feb3a2de7e4c Author: Alan Garny Date: Fri Jun 3 15:31:33 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 6e1fedd8d79480d6845de346b572039a2ad9a21d Merge: cac861be3 4bf7ffc32 Author: Alan Garny Date: Fri Jun 3 15:30:01 2016 +1200 Merge branch '\''master'\'' into issue982. commit 4bf7ffc325108660d114e0fa846fd4aeafecb701 Author: Alan Garny Date: Fri Jun 3 15:28:35 2016 +1200 Some minor cleaning up [ci skip]. commit cac861be3da76f7e4bc90b67f358bac2875dc1e8 Merge: 4556e7a55 34352b5d1 Author: Alan Garny Date: Fri Jun 3 15:26:40 2016 +1200 Merge branch '\''master'\'' into issue982. commit 34352b5d1e546214a6f8710d5de24d31059b189e Author: Alan Garny Date: Fri Jun 3 15:26:10 2016 +1200 Added all the flags from the Printable world flags library. So that we can refer to any of them without any problem. The idea is mainly to be on par with what we are going to do with the oxygen images (see issue #982). commit 4556e7a55a76dab217f8d212bfbdee294cd58f86 Author: Alan Garny Date: Fri Jun 3 13:46:26 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 27a7b78835594690c84068150e1acfcb2e141984 Author: Alan Garny Date: Fri Jun 3 13:46:15 2016 +1200 General: some work on centralising the Oxygen library images (#982). commit 11895a21ee9c46c9ad22373dc6cd1945ecc7956f Merge: 6c43d5e8a 01587d374 Author: Alan Garny Date: Fri Jun 3 11:47:25 2016 +1200 Merge pull request #983 from opencor/issue980 Single Cell view: improved the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (closes #980). commit 01587d374214a25fa9279a1844d4f69865a99728 Author: Alan Garny Date: Fri Jun 3 11:13:22 2016 +1200 Single Cell view: some work on improving the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980). commit 761911e4560bf47962a6b5528ac07e4ffffb0567 Author: Alan Garny Date: Fri Jun 3 10:54:55 2016 +1200 Some minor cleaning up [ci skip]. commit 3fe2a3a37dd1ed90307a3726ed62fe9a9190957f Author: Alan Garny Date: Fri Jun 3 10:52:41 2016 +1200 Single Cell view: some work on improving the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980). commit 6f4279a0354fd61bfa825ed9392d45c2f56ac821 Author: Alan Garny Date: Fri Jun 3 10:08:20 2016 +1200 Single Cell view: some work on improving the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980). commit 60bc2caeca272a8e1712aeb3c443d7f77858922b Author: Alan Garny Date: Thu Jun 2 17:31:24 2016 +1200 Single Cell view: some work on improving the plotting of (running) simulation data when showing/hiding a graph, panning, scaling and zooming in/out (#980). commit 6c43d5e8ad7975a6b13418d8c827b3a1176fb926 Author: Alan Garny Date: Thu Jun 2 16:13:11 2016 +1200 Single Cell view: slight improvement to the alignment of graph panels [ci skip]. commit e68dddd96ea356ff6c029172954dd92c0da45edd Author: Alan Garny Date: Thu Jun 2 15:39:56 2016 +1200 Some minor cleaning up [ci skip]. commit 49f98be562f7d789d2c4eb3c9adc287bf733fce1 Author: Alan Garny Date: Thu Jun 2 15:31:10 2016 +1200 Some minor cleaning up [ci skip]. Can’t remember what was the reasoning for checking whether axes changed. What is certain is that it doesn’t look ‘right’. For example, resetting the fact that axes have changed when clearing the graphs…!? commit 9e108066be20c2bd6f0fbc57b56adcab61df190c Author: Alan Garny Date: Thu Jun 2 15:11:12 2016 +1200 Some minor cleaning up [ci skip]. commit e304cedf5aaf2188e23084da8717691cfac83164 Author: Alan Garny Date: Thu Jun 2 15:05:04 2016 +1200 Some minor cleaning up [ci skip]. commit 5eec6f22272931feb4837152cc7a0e2a17d20fa0 Merge: d4d0ea577 9e93070d2 Author: David Brooks Date: Wed Jun 1 18:59:18 2016 +0100 Merge pull request #979 from dbrnz/rename_output_html Rename HTML templates to avoid resource name conflicts (#978) commit 9e93070d225371e62fb6251aa3cdacdd6e32b32f Author: David Brooks Date: Wed Jun 1 15:17:57 2016 +0100 Rename HTML templates to avoid resource name conflicts (#978) commit d4d0ea577651c4daac23424ba170b8978f3b7040 Author: Alan Garny Date: Wed Jun 1 20:56:43 2016 +1200 Slight update to the downloads page [ci skip]. commit 0a2f9d5c460fd01ecd87081e626986d11d996b77 Author: Alan Garny Date: Wed Jun 1 20:35:54 2016 +1200 Some minor cleaning up [ci skip]. commit 98c5854df94b31588d11cb825fa2779b9fc53670 Author: Alan Garny Date: Wed Jun 1 20:03:39 2016 +1200 Some minor cleaning up [ci skip]. commit c4546e6de4eba1d7381534b2363b0c90d69010ac Author: Alan Garny Date: Wed Jun 1 20:01:58 2016 +1200 Some minor cleaning up [ci skip]. commit 4eb8a7508b916780e055bb21df521b42f31f7d8a Merge: 5b7820d4f 0c6959338 Author: Alan Garny Date: Wed Jun 1 19:56:19 2016 +1200 Rename WebViewWidget to WebViewerWidget and move it to its own plugin (WebViewer from the Core plugin) (closes #976). commit 0c6959338a82b26cbe5f67e8339c9d3089c401f5 Author: Alan Garny Date: Wed Jun 1 19:37:40 2016 +1200 Some work on renaming WebViewWidget to WebViewerWidget and move it to its own plugin (WebViewer from the Core plugin) (#976). commit 81704d8e672b967c56826db96f8c7f645f89154b Author: Alan Garny Date: Wed Jun 1 19:20:57 2016 +1200 Some work on renaming WebViewWidget to WebViewerWidget and move it to its own plugin (WebViewer from the Core plugin) (#976). commit 41f2744ba019b0f2a13a0a3a2d45d9da0b3a8947 Author: Alan Garny Date: Wed Jun 1 18:47:11 2016 +1200 Some work on renaming WebViewWidget to WebViewer and move it to its own plugin (from the Core plugin) (#976). commit 5b7820d4f270d42cf703dd0835d5aa06a9a92b39 Merge: 9c26947a3 8e64f2d4e Author: Alan Garny Date: Wed Jun 1 17:38:52 2016 +1200 Updated the binaries of our different third-party plugins (closes #973). commit 8e64f2d4e80f5ad2726cffcb12a80c3796ff2fab Author: Alan Garny Date: Wed Jun 1 16:52:14 2016 +1200 Some work towards updating the binaries of our different third-party plugins (#973). commit c53f7db5b0ed79bd94d30db5a789b201e9ee98d9 Author: Alan Garny Date: Wed Jun 1 16:44:47 2016 +1200 Some work towards updating the binaries of our different third-party plugins (#973). commit 039f29210df34770fe48014ed8c69c1e5bb1d837 Merge: 53a03718a 9c26947a3 Author: Alan Garny Date: Wed Jun 1 15:54:08 2016 +1200 Merge branch '\''master'\'' into issue973. commit 9c26947a3534e61876b85d9f391438a101c9e5bd Author: Alan Garny Date: Wed Jun 1 15:51:53 2016 +1200 Travis CI: allow the CI of the qt5.6 branch [ci skip]. commit 53a03718a88f10506a04c63d8066d0bdb5d3a758 Author: Alan Garny Date: Wed Jun 1 14:04:03 2016 +1200 Some work towards updating the binaries of our different third-party plugins (#973). commit f4ef0c7dda64952ea9a23d3fb604e1c3dba997c1 Author: Alan Garny Date: Wed Jun 1 13:34:30 2016 +1200 Slight update to our downloads page [ci skip]. commit 66e975c5b17640b800892ea20a05f34fc2aadf4b Author: Alan Garny Date: Wed Jun 1 13:29:28 2016 +1200 Some minor cleaning up [ci skip]. commit ce30c2683d28a7a51b8c573894cc063c6ae3c56f Merge: 1e9b059a6 bf50ae6ee Author: Alan Garny Date: Wed Jun 1 13:11:47 2016 +1200 Qt: upgraded to version 5.5.1 (closes #971). commit bf50ae6ee91fb441e30f943a92b4eda2d24a5b33 Author: Alan Garny Date: Wed Jun 1 12:52:21 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). Addresses the issue about the Single Cell view: to simulate the N62 model with one or several graphs and with, for example, a 200,000 slow down results in the plotting area repeatedly becoming black. This time, we have a proper fix. Indeed, to disable the temporary event filter wasn’t the right approach since it resulted in the whole plotting area being repainted. It was ‘fine’ on my development machine (OS X 10.11), but not on a vanilla OS X 10.8-10.10 machine where plotting 1,000,000 data points resulted in chunks of data points being plotted at once… The ‘new’ fix consists of setting the CopyBackingStore attribute to true. This has a slight disadvantage which is that the backing store is constantly copied over to the canvas, but at least it works as expected on both my development machine and OS X 10.8-10.10. commit 11d400003dfe985c60e23a113b1ec3c3c06c98a9 Author: David Brooks Date: Tue May 31 19:36:01 2016 +0100 Save work-in-progress... commit 155c3e4993924a8a7012972100076645c286a17a Author: Alan Garny Date: Tue May 31 17:54:36 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). Addresses the issue about the Single Cell view: to simulate the N62 model with one or several graphs and with, for example, a 200,000 slow down results in the plotting area repeatedly becoming black. commit 005b6f17111c6250e4fa99401c1277a034b0f423 Author: Alan Garny Date: Tue May 31 16:01:34 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit cc919bf6c7e99256137c6be73b9d53dbe1711d3a Author: Alan Garny Date: Tue May 31 11:36:20 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). Addresses the issue about the CellML Text view (to edit, say, the N62 model results in one or two black lines flashing repeatedly). commit af34f069b11cfc50844e9e6fc92a847737785e48 Author: Alan Garny Date: Tue May 31 11:32:11 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit a9ebe9c4ae641a3caabc19773a756fca6057bf88 Author: Alan Garny Date: Tue May 31 11:29:38 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). Addresses the issue about the CellML Text view (to edit, say, the N62 model results in one or two black lines flashing repeatedly). commit d2f8d2c4ee16e343b83e4df53e338460dde42b69 Author: David Brooks Date: Mon May 30 17:51:40 2016 +0100 There'\''s no need to expose all of `PmrRepository`... commit 8177c1050c06ad8fb593f97391477744d9f17b5e Author: David Brooks Date: Mon May 30 17:50:48 2016 +0100 Share a single `PmrRepository` instance amongst different plugins. commit 22ccc4f8d982fc7b7e43575a05ab4566ac01f3b4 Author: David Brooks Date: Mon May 30 17:45:10 2016 +0100 Add icons for closed and open workspacee. commit 4ca03b8364f5363038061ba4f8df9a98c2b6c2cb Author: Alan Garny Date: Mon May 30 16:34:28 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). For some reasons, qobject_cast<>() doesn’t work (anymore?) on Linux, which means that we cannot test for object->inherits() anymore either… commit 2d3d69c24e389e04f5411d416c52e78b25b0a729 Author: Alan Garny Date: Mon May 30 15:27:47 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 6954fa165bed6a551db0378fd22d9b060b0bf487 Author: Alan Garny Date: Mon May 30 15:05:23 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 5b1d2f2f7ad56925996a8d341b688eaa1207049a Author: Alan Garny Date: Mon May 30 13:58:54 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 6aac4fe3d45c942e61e3f46f3ea31ad46fee7b9d Author: Alan Garny Date: Mon May 30 13:55:12 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 049c5c9297fa8d0d95aa34dee4175033075fb1d4 Author: Alan Garny Date: Mon May 30 11:48:53 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 5a76da2ee1ca8c758acbf6184edd72b2950da3bd Author: Alan Garny Date: Mon May 30 11:38:12 2016 +1200 Qt: some work towards upgrading to version 5.5.1 (#971). commit 1e9b059a631f00035de5d82249d3fc7822287ac3 Author: Alan Garny Date: Mon May 30 11:08:18 2016 +1200 jQuery: upgraded to version 2.2.4 (closes #970). commit 53337a63548d8698cf34b0fcbe79ecbc5af60273 Author: Alan Garny Date: Mon May 30 08:47:26 2016 +1200 New snapshots. commit 89a69a1b2da60dacae5a5cb65c8da3fa219c4917 Author: Alan Garny Date: Mon May 30 08:46:58 2016 +1200 Slight update to the user documentation [ci skip]. commit a3a4622936fd63a14629eff9413bb58d82b1a92e Author: Alan Garny Date: Sat May 28 22:53:30 2016 +1200 LLVM: fixed a small problem on Windows when in debug mode (related to issue #913). Finally found the cause (and fix) of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll File: C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\INCLUDE\xutility Line: 2796 commit 7c1ba93d8104a0ca312feb3628085dae2c8a09f1 Author: Alan Garny Date: Sat May 28 22:36:31 2016 +1200 LLVM: fixed a small problem on Windows when in debug mode (related to issue #913). Finally found the cause (and fix) of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll File: C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\INCLUDE\xutility Line: 2796 Expression: invalid null pointer commit 38b22556f182a5ee50f39497457aab62127717d9 Author: David Brooks Date: Wed May 25 20:24:45 2016 +0100 Always pass network reply'\''s `NameProperty` when calling `sendPmrRequest()`. commit 1fd352002cdf9644e7cdf6179c138cce4cc2f36b Author: David Brooks Date: Wed May 25 20:22:23 2016 +0100 `Url` method name should all be in lowercase. commit 0ef27c3099b4333e187b00078171fa21da561bdc Author: David Brooks Date: Wed May 25 20:20:09 2016 +0100 Define a `PmrWorkspace` class and use it to clone a workspace (#969) commit 19788db486de15824718f200252b63458aaefe83 Author: David Brooks Date: Wed May 25 20:06:21 2016 +0100 First version of a plugin to provide a PMR Workspace window (#969) commit 1fa76722b1012a69ec186fdd696a2c32c61b0377 Author: David Brooks Date: Wed May 25 15:47:01 2016 +0100 Extend `PmrRepository` to include authentication. commit 29ed75511880c43536da14597690b14432784ea8 Author: David Brooks Date: Wed May 25 15:28:25 2016 +0100 Signal connection parameter type was wrong. commit 7c434e3ba3dad0207cfad4ed1c089deecc374232 Author: Alan Garny Date: Tue May 24 18:31:10 2016 +0200 LLVM: fixed a small problem on Windows when in debug mode (related to issue #913). Finally found the cause (and fix) of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll File: C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\INCLUDE\xutility Line: 2796 Expression: invalid null pointer commit 7c809d4df75c3d553ab4eb7be3f01ec72a4768fd Author: David Brooks Date: Tue May 24 16:35:44 2016 +0100 Use OAuth plugin to authenticate against a PMR instance (#969). commit 0420daa6359cfd344d7fd8fdf13af4bf7f0ff95a Author: Alan Garny Date: Tue May 24 16:45:52 2016 +0200 LLVM: fixed a small problem on Windows when in debug mode (related to issue #913). Finally found the cause (and fix) of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll File: C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\INCLUDE\xutility Line: 2796 Expression: invalid null pointer commit b14b30bb74c98658a29cba40c21ca5c9c5a44d99 Author: Alan Garny Date: Tue May 24 15:37:01 2016 +0200 Some cleaning up of the user and developer documentations [ci skip]. commit 21eae63b657488c28d942ec8a7f7add6da8f13b6 Author: Alan Garny Date: Mon May 23 19:06:48 2016 +0200 Standard file manager: fixed a problem with wrongly deleting some file objects. Indeed, our StandardFileManager class would delete all the objects held by mFiles, but it shouldn’t have. People should just ensure that things are being unmanaged. The end result is that when we were, for example, trying to export a CellML file to C from the command, the export itself would work fine, but then OpenCOR would crash on exit… commit 4b6f9afdf9bb057ee8e2b71eb2840fac394fc6b1 Author: Alan Garny Date: Mon May 23 17:04:27 2016 +0200 Some minor cleaning up [ci skip]. commit 298bb04084175feb967043aef5b94f562746d489 Author: Alan Garny Date: Mon May 23 16:10:59 2016 +0200 Some minor cleaning up [ci skip]. commit 94968652396b452e7201ef39d1b9d82f8b964ac5 Author: Alan Garny Date: Mon May 23 16:08:51 2016 +0200 Some minor cleaning up [ci skip]. commit 35a2bd839e2b6621f2c92cd4dd734cebe0ae3faf Author: Alan Garny Date: Mon May 23 14:09:39 2016 +0200 COMBINE support: improved our tests. commit 15ee993519b973b41df2a725419c52d1d90acd85 Author: Alan Garny Date: Mon May 23 12:57:14 2016 +0200 Some minor cleaning up [ci skip]. commit 0b9afea9156ca82265148f66234f40b324eb5afc Merge: 7c401c7f9 6e323b7dd Author: David Brooks Date: Sun May 22 11:42:03 2016 +0100 Merge branch '\''master'\'' into pmrworkspace commit 6e323b7dd5bc43298feff88830cfaa5a2caf8a25 Merge: 65a8d58fd c0bfa4c3d Author: David Brooks Date: Sun May 22 11:06:08 2016 +0100 Merge pull request #968 from dbrnz/stripped Rationalise names of BioSignalML libraries commit c0bfa4c3d0c106cb630a432ed0c2a370c81a797b Author: David Brooks Date: Sun May 22 10:44:16 2016 +0100 Rationalise names of BioSignalML libraries and use stripped versions (#954) commit 65a8d58fdf1030813ec1ea9795b844dd7a56deb3 Author: Alan Garny Date: Fri May 20 15:44:25 2016 +0200 Some minor cleaning up [ci skip]. commit 376f3dd014cdf319362d0b919a3c48e71edff1e6 Merge: 00c09a7a3 da2656856 Author: Alan Garny Date: Fri May 20 15:36:38 2016 +0200 CMake: simplify the deployment of plugins'\'' external binaries (closes #966). commit da265685627f55ef0481ff2f0def96592a51fcfa Author: Alan Garny Date: Fri May 20 14:45:12 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 1a868dd148415c0bdc13a00f502cffa3d0c72bb6 Author: Alan Garny Date: Fri May 20 14:22:23 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit decb8a6d757330ad00b8471b3c631c9af9e7461c Author: Alan Garny Date: Fri May 20 13:53:43 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit c46d91422bacd5b8e271c4502a906e0af395181f Author: Alan Garny Date: Fri May 20 13:50:03 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit cbcbd5823143f206ffd6ac0e9ff6abd15b56020f Author: Alan Garny Date: Fri May 20 13:27:58 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 6b56d4aa0883d30db6ea377c19c88948b40f35ac Author: Alan Garny Date: Fri May 20 13:23:53 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 905dfd064ec062462bb139041e4e3ffe8e730d59 Author: Alan Garny Date: Fri May 20 13:22:34 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 4b6bdbc998dbc3b9b95835d2ef044b30c0a80d95 Author: Alan Garny Date: Fri May 20 13:00:37 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 2fafcab4dbf9f2cf8fd1d2220f6516f58c6681d1 Author: Alan Garny Date: Fri May 20 11:56:07 2016 +0200 CMake: some work on simplifying the deployment of plugins'\'' external binaries (#966). commit 00c09a7a3551b2f7578bf48eaa2c6d08e6d65146 Author: Alan Garny Date: Thu May 19 18:35:05 2016 +0200 Added support for Ubuntu 16.04 LTS (closes #965). commit 7f7a2612be5ef4f0593c80958d59b2e5e0d4b2fd Author: Alan Garny Date: Thu May 19 17:14:02 2016 +0200 Some minor cleaning up [ci skip]. commit 7c401c7f924cbfebd6abfed4942ef9bf90fe9a79 Author: David Brooks Date: Thu May 19 16:03:02 2016 +0100 Remove unnecessary #includes. commit b29abaec760b39e2a9d284c3595fc458beee8eb1 Author: David Brooks Date: Thu May 19 15:58:53 2016 +0100 Add `o2` OAuth library as a plugin (to use for PMR authentication) commit dc42aaf0beb2d7fd54faca52db78f49ca7c54e54 Author: David Brooks Date: Thu May 19 15:43:56 2016 +0100 Rename `PmrWebService` to `PmrRepository`. commit ee458c51e91cd99be0862045fc348d48bd8ab197 Author: Alan Garny Date: Thu May 19 14:56:51 2016 +0200 IDA solver: make sure that we compute the root information before computing the essential variables and then residuals [ci skip]. commit 3acbd895debd9af937550fe1f9431fea3072831a Author: Alan Garny Date: Thu May 19 14:55:27 2016 +0200 Slight update to the developer documentation [ci skip]. commit 5748f2e1558aa0672b701dcca46f5539bd5b500d Author: Alan Garny Date: Thu May 19 13:43:16 2016 +0200 Slight update to the user documentation (related to issue #965) [ci skip]. commit 956e93f64c37f61640ecd937564aa7b4e7c9cfaa Author: Alan Garny Date: Thu May 19 11:56:14 2016 +0200 Raw CellML view: only display an information message when necessary [ci skip]. This is when a CellML 1.1 model has some issues. We only want to let the user know that the issues might be in one of the imported file if there are indeed imported files… commit e76419d09931bf85c554b5fb9cc590e56f37f82c Merge: edf782b6b 639dec657 Author: Alan Garny Date: Wed May 18 14:16:34 2016 +0200 LLVM: upgrade to version 3.8.0 (closes #913). commit 639dec6579d05c52fd65b89cfe069c7ce5a83858 Author: Alan Garny Date: Wed May 18 13:58:08 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 95ba4d0f8fa0752ca1f2d8bf0ab8468c67522566 Author: Alan Garny Date: Wed May 18 13:55:30 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit df17c4c54257e798d6a2fdda91b5747a746f2e33 Merge: 1b385abdd edf782b6b Author: Alan Garny Date: Wed May 18 13:52:09 2016 +0200 Merge branch '\''master'\'' into issue913. commit edf782b6b8a968991dbf4eb7365812e285a5e215 Author: Alan Garny Date: Wed May 18 13:46:02 2016 +0200 Travis CI: trying to re-enable Linux CI. commit 1b385abdde3669ff8a6d2012c1925544d711d0b7 Author: Alan Garny Date: Wed May 18 11:44:33 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit b0165d4a7d4cdb8d3e171dd9e296f0007a4259c4 Author: Alan Garny Date: Tue May 17 18:50:46 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit f31e2e2f4458c1d45bf736db56502b0cfb81f8c1 Author: Alan Garny Date: Tue May 17 15:19:59 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit cdfd106d204565170997ba2e4fd9a5e44a0928af Merge: 261001ebd 44dc5d204 Author: Alan Garny Date: Tue May 17 14:23:02 2016 +0200 Merge branch '\''master'\'' into issue913. commit 44dc5d204a884381e73cfeca41b74abe86440017 Author: Alan Garny Date: Tue May 17 14:08:21 2016 +0200 Travis CI: some debug traces for the COMBINESupport tests. commit b44a9a737cc2f145c7af7e0d2072427763e058da Author: Alan Garny Date: Tue May 17 13:50:34 2016 +0200 Slight update to the developer documentation [ci skip]. commit 261001ebd3ae08679626a0ada32bf3a393ee8e83 Author: Alan Garny Date: Tue May 17 12:53:59 2016 +0200 Merge branch '\''master'\'' into issue913. commit 692dbffba7f64cd1e62f38c048d025ab3f86484d Merge: 7eaadea65 4026e27f2 Author: Alan Garny Date: Tue May 17 12:48:59 2016 +0200 Merge pull request #963 from opencor/issue962 Copyright: replaced "OpenCOR team" with "University of Auckland" (closes #962). commit 4026e27f2a27a6de7790bd478513e8fcd8ce9d3d Author: Alan Garny Date: Tue May 17 11:09:50 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). Ok, none of the ‘fixes’ found for the problem described at https://github.com/travis-ci/travis-ci/issues/6048 work, giving up for now by temporarily disabling Linux CI. commit 4e25d237998be74fba30ffd3b125f0da9df97b41 Author: Alan Garny Date: Tue May 17 11:01:31 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). Hmm, for some reasons we are now getting the problem described at https://github.com/travis-ci/travis-ci/issues/6048. So, we are ‘fixing’ it here… commit db8091eb575409a2f36d3a807355b3cead18a42b Author: Alan Garny Date: Tue May 17 10:48:14 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). Hmm, for some reasons we are now getting the problem described at https://github.com/travis-ci/travis-ci/issues/6048. So, we are ‘fixing’ it here… commit 0e2389361f254e07eaec9a9fc32f3759179dd5e0 Author: Alan Garny Date: Tue May 17 10:27:16 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). Hmm, not sure why that .orig file didn’t get deleted during the patching… commit d17970da1e4d8452710b7d7ad70e4de59ff9cb4e Author: Alan Garny Date: Tue May 17 10:24:39 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). commit a6c3b9a63460b1ba833e617a17f2151ad4e271b0 Author: Alan Garny Date: Tue May 17 10:17:30 2016 +0200 Copyright: some work towards replacing "OpenCOR team" with "University of Auckland" (#962). commit cd4c1adb28ebbe665b15b18582be93dde57b766e Author: Alan Garny Date: Mon May 16 20:46:34 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 2d0911f80d0e054769511b48ed0e38683f88e7f0 Merge: 86df80082 7eaadea65 Author: Alan Garny Date: Mon May 16 19:31:27 2016 +0200 Merge branch '\''master'\'' into issue913. commit 7eaadea65d6be8968db012ad74f8200b1542f99e Author: Alan Garny Date: Mon May 16 19:30:21 2016 +0200 Some minor cleaning up. Hmm, we could only build using ninja… commit 86df80082dabd96843c5d1e507e07d20e73fdc32 Author: Alan Garny Date: Sat May 14 20:46:27 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 1a1e6a3120ed823762e2d097685c440536fb35f9 Author: Alan Garny Date: Sat May 14 07:36:15 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit e98d8e1474fb4f96eac68b01cc53060a65118947 Author: Alan Garny Date: Fri May 13 16:51:35 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 6e0aa8d872953b1dda130c192d7f1ae6d1ce3ab5 Author: Alan Garny Date: Fri May 13 13:31:43 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit fd57d2da88242c698c1bb27b35541df4b7b04592 Merge: 128ec3b78 ef367ad33 Author: Alan Garny Date: Fri May 13 10:42:37 2016 +0200 Merge branch '\''master'\'' into issue913. commit ef367ad33b57bfcbe57171632ecdcaa751c2b5db Author: Alan Garny Date: Fri May 13 10:42:05 2016 +0200 Some minor cleaning up [ci skip]. commit 128ec3b780a20b0564276b68277010bf429ea5a9 Author: Alan Garny Date: Fri May 13 10:32:52 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 285aea121afb3b3f1760120d2ab9777e65a40dee Author: Alan Garny Date: Fri May 13 09:50:59 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit f3d9eb246fc20bb83a84615e370f3b63563c9f81 Merge: 3339f5daf 512e5839e Author: Alan Garny Date: Fri May 13 09:33:10 2016 +0200 Merge branch '\''master'\'' into issue913. commit 512e5839ebeb6359c1f780f382455a833c85e5fb Author: Alan Garny Date: Fri May 13 09:32:30 2016 +0200 Ensure that our NOTICE.txt file always has the correct copyright year information. commit 3339f5daf09af057f215a3d6e9adcc93159de5d8 Author: Alan Garny Date: Thu May 12 16:45:41 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 521954a7275fa7fab61dfd27f8f43a20d41f962d Author: Alan Garny Date: Thu May 12 14:07:10 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit 32cea76dc70b69c6625976a964297c89c005d27f Author: Alan Garny Date: Thu May 12 13:56:27 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 (#913). commit c15e97913877e39efa2ede7acdc8a119b311a74a Author: Alan Garny Date: Thu May 12 13:41:15 2016 +0200 Slight update to our common CMake file. commit 55a64369f13a1448c931253f85d48580b5c0ed90 Author: Alan Garny Date: Thu May 12 10:05:02 2016 +0200 Slight updates to our developer documentation [ci skip]. commit 22f1d99f2644419487baa174ae97510e489b37d4 Author: Alan Garny Date: Wed May 11 19:14:21 2016 +0200 Slight updates to the developer documentation [ci skip]. This follows a request from @dbrnz to add more information on how to internationalise an OpenCOR plugin (see pull request #950). commit f603ffeb90ae5b6cde83f396c34de662af9730a5 Author: Alan Garny Date: Wed May 11 18:25:07 2016 +0200 Slight updates to the developer documentation [ci skip]. commit f4d2bc9d40cb04097949759f1f5a8283851c27cd Author: Alan Garny Date: Wed May 11 18:24:44 2016 +0200 Slight updates to the developer documentation [ci skip]. commit 70d06a2914f586809d1c8c3ca4815f70a6a81bba Author: Alan Garny Date: Wed May 11 16:51:00 2016 +0200 Slight updates to our developer documentation [ci skip]. commit 4db9f2cebcab542381bbd38218acb4abc4e006d3 Merge: 4d89662e0 57ffa5382 Author: Alan Garny Date: Wed May 11 15:29:14 2016 +0200 libSBML: upgraded to version 5.13.0 (closes #949). commit 57ffa5382c971e95b158243baa085ad9a364cd4d Author: Alan Garny Date: Wed May 11 15:08:30 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit 5a22339fbcc73f4d09c305327e1ef870837a2c62 Author: Alan Garny Date: Wed May 11 15:07:54 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit fce7ef1475f641e96566d232398411930fd64a06 Author: Alan Garny Date: Wed May 11 14:13:05 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit c013ebf54c477b17556e7a783124d033259221f5 Author: Alan Garny Date: Wed May 11 14:09:58 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit dcb0287a42f6d13946b1c230a090dd20d620a598 Author: Alan Garny Date: Wed May 11 14:08:26 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit b9a84913440ccb8b2122216fd3d15d5d8c493f22 Author: Alan Garny Date: Wed May 11 11:53:20 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit 7dd1862913405bbf9eda07a2361c5a20c557165c Author: Alan Garny Date: Wed May 11 10:31:43 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit 6f6cbb8ff1682ec27ced88a68336cf91c969c4a3 Author: Alan Garny Date: Wed May 11 10:25:39 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 (#949). commit 4d89662e0c756be057ec25c6adf56f5c1e1cd9f0 Merge: e6b5090ea 04efeba2f Author: Alan Garny Date: Tue May 10 19:31:43 2016 +0200 QScintilla: upgraded to version 2.9.2 (closes #947). commit e6b5090ea09936aa4ad47002540f6eed80c23e31 Author: Alan Garny Date: Tue May 10 19:05:16 2016 +0200 Travis CI: some debug traces for the COMBINESupport tests. commit 04efeba2f114e86b7b1a17b80245221ec25bb72c Author: Alan Garny Date: Tue May 10 18:45:26 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 (#947). commit c8790bb56c8442a6f590fae4b8747f3bb9606224 Author: Alan Garny Date: Tue May 10 18:26:49 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 (#947). commit e81823a782b2be8e94799a534adeacc9d87d5389 Author: Alan Garny Date: Tue May 10 18:25:50 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 (#947). commit 91fe8e41d713a2918430e0b84eed669a12874d65 Author: Alan Garny Date: Tue May 10 17:31:10 2016 +0200 Slight update to some documentation (related to issue #953) [ci skip]. commit 2a16be3594fb92eb6cb8fa65ad7aeb7815159ed0 Author: Alan Garny Date: Tue May 10 17:22:33 2016 +0200 KaTeX: upgraded to version 0.6.0 (closes #948). commit f4aa18f02709c8478bf833a1258eb5b290aa9823 Author: Alan Garny Date: Tue May 10 17:14:33 2016 +0200 OpenSSL: upgraded to version 1.0.2h (closes #956). commit 121fddecae58618e1d2c95b8a17d51e49b918904 Author: Alan Garny Date: Tue May 10 11:52:12 2016 +0200 Some minor cleaning up and slight refactoring following the merge of pull request #950 from dbrnz/pmrsupport. commit 94adc8c8d965603391f28a15dc8acfc836640465 Author: Alan Garny Date: Mon May 9 18:52:45 2016 +0200 Have "Physiome Model Repository" as title of the PMR window (closes #958). commit 3b3c365a97f8c62a273eb4ae55af460fe2f1e9ae Author: Alan Garny Date: Mon May 9 18:06:55 2016 +0200 Some minor cleaning up and slight refactoring following the merge of pull request #950 from dbrnz/pmrsupport. commit 1e0e780bb9db7184849e0652f71eb7d9f9c3f3a4 Author: Alan Garny Date: Mon May 9 17:57:24 2016 +0200 Some minor cleaning up [ci skip]. commit aa66e78ea92e94fa968e6120415a575f2e6f6c7d Author: Alan Garny Date: Mon May 9 16:53:36 2016 +0200 Some minor cleaning up [ci skip]. commit b30f132673d4e390ad6b41112ede8fa2511cbafc Author: Alan Garny Date: Mon May 9 16:14:55 2016 +0200 Some minor cleaning up [ci skip]. commit 227c3deb4f23f9654182870457545718263ee87c Merge: bc135c9de ddc6d81cc Author: Alan Garny Date: Mon May 9 15:58:43 2016 +0200 Merge pull request #950 from dbrnz/pmrsupport Separate out PMR web service interface into its own plugin (closes #931). commit ddc6d81cceaca57ce2dd64438ee0460991ba2321 Author: David Brooks Date: Fri May 6 11:06:32 2016 +0200 Miscellaneous code tidy (#931) commit 8e4ef20482c94656779867eab3a0f8591fee64cc Author: David Brooks Date: Fri May 6 11:05:36 2016 +0200 Correctly describe the PMRSupport plugin. commit ec0da4914c13eae9b97b186e831b55a8831df10f Author: David Brooks Date: Fri May 6 11:00:51 2016 +0200 `PmrWindowWidget::showExposureFiles` is now a public slot. commit 4ff96f816ff04c69973f172f9e0618af605ea2df Author: David Brooks Date: Fri May 6 10:58:16 2016 +0200 Export `PmrExposure` for Windows DLL. commit 12a8e17888fd4d40dc3466a395feea169aad1290 Author: David Brooks Date: Fri May 6 10:56:36 2016 +0200 Correctly specify note to be added to information messages. commit 7f7e6573c0958c79963f84847bf779df8b314f9f Author: David Brooks Date: Fri May 6 10:20:36 2016 +0200 Support internationalisation in the PMRSupport plugin and move appropriate messages from the PMRWindow plugin (#931) commit 3a36dc9b31d9e7c5b94e0d20873bb1178ca4953b Author: David Brooks Date: Thu May 5 16:07:12 2016 +0200 The PMRSupport plugin doesn'\''t need the PluginInterface (#931) commit 805675eb55acb0b595640b2f0815511c3ccbb5d7 Author: David Brooks Date: Thu May 5 16:05:02 2016 +0200 Tidy up warning and information response code from PMR web service (#931) commit 0e3e3260a8c3782d5939cf274c6f1999da199c5e Author: David Brooks Date: Thu May 5 16:00:41 2016 +0200 Exposures are now managed by the PMRSupport plugin (#931) commit 8dcfd8798348b0dd5fdc595cd1facddd14239a6e Merge: df66a3426 bc135c9de Author: David Brooks Date: Thu May 5 12:19:12 2016 +0200 Merge branch '\''master'\'' into pmrsupport Conflicts: src/plugins/organisation/PMRWindow/src/pmrwindowwindow.cpp commit bc135c9de71cc3612923d579e9dcb8f47749db86 Author: Alan Garny Date: Wed May 4 16:45:56 2016 +0200 Some minor cleaning up [ci skip]. commit d76d75fd314937c3bb30f306e4f4334f125a11a2 Author: Alan Garny Date: Wed May 4 11:49:54 2016 +0200 Some minor cleaning up [ci skip]. commit c0efa07861c8c4d449f0ce192990a5471af062c3 Author: Alan Garny Date: Wed May 4 11:49:31 2016 +0200 Slight update to the developer documentation following the release of Xcode 7.3.1 [ci skip]. commit ad71f11af345873d84c850d6715752acee9ba1b6 Author: Alan Garny Date: Mon May 2 11:47:54 2016 +0200 Some minor cleaning up [ci skip]. commit 80b90f3ef9e7b75b0f168c076a7cbdde7bfe8e0b Author: Alan Garny Date: Fri Apr 29 19:44:40 2016 +0200 CellML Annotation view: slight CSS improvements [ci skip]. commit e09600bec58f05653b5c7643ff50b97c31c0bdff Author: Alan Garny Date: Thu Apr 28 19:09:09 2016 +0200 UserMessageWidget: re-enabled text interaction [ci skip]. Indeed, without it, we couldn’t click on a link anymore (e.g. to remove the existing metadata of a CellML element in the CellML Annotation view). commit e9f1cd1980d60323c8f4cc68505453669786254f Author: Alan Garny Date: Thu Apr 28 19:01:19 2016 +0200 Some minor cleaning up [ci skip]. commit 692bf0dd9da48bf3da70ed5d405f206594266b05 Author: Alan Garny Date: Thu Apr 28 15:28:33 2016 +0200 Travis CI: enable version branches. commit d9471ea8577c15a5108bc78a61daf6a2640ccfda Author: Alan Garny Date: Wed Apr 27 19:01:35 2016 +0200 Travis CI: only have it work for the master branch. Indeed, it just takes too long otherwise when we work on a branch and then want to merge it through a PR. commit d8acba5dd1d2f9b3bad9793019964a7f5617fc36 Merge: c7fb9e1bf b99eb5e3b Author: Alan Garny Date: Wed Apr 27 18:58:06 2016 +0200 Merge pull request #955 from opencor/issue953. Linux / OS X external binaries should be stripped off their non-global symbols (closes #953). commit b99eb5e3ba62cb5d5479a05422840b9bd8699adc Author: Alan Garny Date: Wed Apr 27 18:07:39 2016 +0200 Linux / OS X external binaries are now stripped off their non-global symbols (#953). Well, most of them (see issue #954 for the pending ones). commit c7fb9e1bf74f9ac3bce8b3706e0026e38f1066c2 Merge: 3b6583707 dcc2f0e79 Author: Alan Garny Date: Wed Apr 27 18:03:15 2016 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3b65837074c547dca1de0496f7b1a1767412f6ef Author: Alan Garny Date: Wed Apr 27 18:02:48 2016 +0200 Qt: some work on upgrading to version 5.6 (#908) [ci skip]. commit dcc2f0e79318524ad503a01f8bad04761a104eac Author: Alan Garny Date: Tue Apr 26 11:35:22 2016 +0200 Some minor cleaning up [ci skip]. commit df66a34263a951a97a8010b3f7b89aa714f8f693 Author: David Brooks Date: Tue Apr 26 08:25:20 2016 +1200 Reference the libgit2 and zlib plugins otherwise, on OS X, the PMR window won'\''t be able to find them. commit a6c27e2efc0360e336251ec9802f299c8d01cd51 Author: David Brooks Date: Tue Apr 26 08:17:25 2016 +1200 Simplify and clean up our CMake scripts (#951) commit b47aa841fb7684e68c4dc7ca18e6d157bcd2c351 Author: David Brooks Date: Tue Apr 26 08:11:24 2016 +1200 List PMRSupport as a dependency for PMRWindow so the plugins window works as expected. commit c952103aebad203e819842e40c377d3f7fe630e4 Merge: 503a2693c d0d4c4f7b Author: David Brooks Date: Tue Apr 26 08:09:37 2016 +1200 Merge branch '\''master'\'' into pmrsupport commit d0d4c4f7b6782c7bdb4c1ef5f997681ed138a845 Merge: 80eecaf72 561b95718 Author: Alan Garny Date: Mon Apr 25 19:30:47 2016 +0200 Merge pull request #952 from opencor/issue951 Simplify and clean up our CMake scripts (closes #951). commit 561b9571850123b1499e696ff37dbd300b1d91bd Author: Alan Garny Date: Mon Apr 25 18:44:33 2016 +0200 Simplify and clean up our CMake scripts (#951). commit ae53405b8ae8c0530a91e75c3a14ca8e76003a30 Author: Alan Garny Date: Mon Apr 25 17:27:43 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit b2cb038b66a283ea79c22dcc44d7d8ebc6e3c089 Author: Alan Garny Date: Mon Apr 25 17:14:22 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit 7a9b7e7621d9176bc75304298ee5f602482cfab7 Author: Alan Garny Date: Mon Apr 25 17:11:44 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit 130eb2180219501f136fb8cf3f712a6df42877e7 Author: Alan Garny Date: Mon Apr 25 16:39:53 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit c1cd19b4cc2e58bc06c96251ca81e3419fc453ea Author: Alan Garny Date: Mon Apr 25 16:07:09 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit 7321d67181cca4b1b4c4db7d8a3e8adef25745ba Author: Alan Garny Date: Mon Apr 25 15:23:19 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit 99da1486d8ca685c98c698fe586a75d055e42332 Author: Alan Garny Date: Mon Apr 25 13:43:21 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit c67057267f61d2d1df03e8c51059ba7439553652 Author: Alan Garny Date: Mon Apr 25 13:43:11 2016 +0200 Simplify and clean up our CMake scripts (#951) [ci skip]. commit 503a2693cc5c043ea19470ff2ed6d12e7ac3c012 Author: David Brooks Date: Mon Apr 25 21:30:53 2016 +1200 #931: Add Windows export definitions. commit 37c4ff62488f3525ba7f9356efa562ff33e7bbcc Author: David Brooks Date: Mon Apr 25 21:07:26 2016 +1200 #931: Separate out PMR web service interface into its own plugin. commit 80eecaf725d39e24c9b5e9553e9178bc95d626ec Author: Alan Garny Date: Sat Apr 23 17:17:06 2016 +0200 Some minor cleaning up [ci skip]. commit 3cac3ae968c29daeb8283dd10d233292cdcdc280 Author: Alan Garny Date: Sat Apr 23 17:03:26 2016 +0200 Some minor cleaning up [ci skip]. commit ed515e2e917b96cffca21169cea0835092d71699 Author: Alan Garny Date: Sat Apr 23 16:53:21 2016 +0200 Slight updates to the developer documentation [ci skip]. commit a623cc9037ac46af02d4a31927e02657e2eb26bb Author: Alan Garny Date: Fri Apr 22 14:03:57 2016 +0200 Some minor cleaning up [ci skip]. commit 60c5587af825d5f4914b1936060b4d7847113d23 Author: Alan Garny Date: Thu Apr 21 16:36:57 2016 +0200 Some minor cleaning up [ci skip]. commit b3f61275ce316155b28a91c5c3e7da2785c97028 Author: Alan Garny Date: Thu Apr 21 16:33:27 2016 +0200 Some minor cleaning up [ci skip]. commit 2f3f9b074859c943efd778eff0ffb274a92af849 Author: Alan Garny Date: Wed Apr 20 15:38:54 2016 +0200 CLI version: some minor refactoring [ci skip]. commit c4cbf88ff3f7f7daf6b748054d9629a18c9e8b7d Author: Alan Garny Date: Wed Apr 20 15:23:22 2016 +0200 CLI version: some minor refactoring. commit 75a2294d73723b014095356d5a73a1954b70df91 Author: Alan Garny Date: Tue Apr 19 18:59:04 2016 +0200 Header files: cleaned up the third-party header files that enable/disable some warnings. Indeed, I am not sure how it came about, but they were only disabling warnings, never re-enabling them… commit 4de649c989b34db0630f4c1c0f211e76c1583e6d Merge: fe9625dac 2013338ae Author: Alan Garny Date: Tue Apr 19 17:39:00 2016 +0200 Merge pull request #945 from opencor/issue944 Use #pragma once rather than include guards (closes #944). commit 2013338ae1b28bc67197fa07899dd5799bfabde9 Author: Alan Garny Date: Tue Apr 19 16:59:49 2016 +0200 Use #pragma once rather than include guards (#944). commit 1760292b4f1d34327c3421646003c22dc45959a8 Author: Alan Garny Date: Tue Apr 19 16:24:20 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 0d120bd0e80d2552256c589c04c97186dbbf7b65 Author: Alan Garny Date: Tue Apr 19 16:08:20 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 161842dcf898bc32cc3bdf61bfdc7386ec9418fb Author: Alan Garny Date: Tue Apr 19 16:07:28 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit da777eb40bf564e076f59bce96f4c5b36baa3b4f Author: Alan Garny Date: Tue Apr 19 16:07:00 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 361feb56602dcdbeef0088768c2190f1cb3b01dd Author: Alan Garny Date: Tue Apr 19 16:02:07 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 0b093bbf53bbb86f066ddd88cff3d7e989989c8d Author: Alan Garny Date: Tue Apr 19 16:00:49 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit df9ebfa60eca0e0999d675e001203989f4fa7021 Author: Alan Garny Date: Tue Apr 19 15:59:44 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 81f5008e30cad49967ad5effa2c990cb3ba53d72 Author: Alan Garny Date: Tue Apr 19 15:58:52 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 4d2d899f7e6b1e0f34dcf4ecebc0cc952bd7bf0a Author: Alan Garny Date: Tue Apr 19 15:57:58 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 2869f04445f66e83ac1dd6c7594671df2c17d025 Author: Alan Garny Date: Tue Apr 19 15:51:28 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 0178b4bb76a69b188cd8a590476bbbb19b758c85 Author: Alan Garny Date: Tue Apr 19 15:47:48 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 1e316bd32190eef7c27ab9f60d1a8dc2a4c956ac Author: Alan Garny Date: Tue Apr 19 15:40:15 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 7093d0ab9081fafe2f78f26be9c82684241887b9 Author: Alan Garny Date: Tue Apr 19 15:36:22 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit 4d420fa1910f3de5561f9be899d5fe58b3065352 Author: Alan Garny Date: Tue Apr 19 15:34:21 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit a21f2b51eb8eef4a2ee72dcd163d5355711ace1b Author: Alan Garny Date: Tue Apr 19 15:33:10 2016 +0200 Use #pragma once rather than include guards (#944) [ci skip]. commit fe9625dac4df07323052f05eba958ff35c1e138c Merge: ddfd6899a 82f14c75d Author: Alan Garny Date: Mon Apr 18 16:52:50 2016 +0200 Merge pull request #943 from opencor/issue941 Single Cell view: fixed a problem with infinite loop in modification prompting (closes #941). commit 82f14c75d598ed834c61ac1552bb43ee86f6774c Author: Alan Garny Date: Mon Apr 18 15:52:36 2016 +0200 Single Cell view: fixed a problem with an infinite loop in modification prompting (#941). commit ddfd6899a66c1f210993c1f88fbea209ac4456f4 Author: Alan Garny Date: Mon Apr 18 15:32:20 2016 +0200 Central widget: slight improvement to the way we prompt for file modifications [ci skip]. commit cfce502e1aa85a3cc7c98a542d229a19394de89f Author: Alan Garny Date: Mon Apr 18 15:22:42 2016 +0200 File: slight improvement to our file checking algorithm [ci skip]. commit 2b970ac6b90ed4debb910b7fcd2bba5b508a5eb7 Author: Alan Garny Date: Mon Apr 18 14:54:50 2016 +0200 Single Cell view: fixed a problem with opening CellML models from SED-ML documents (closes #942). commit 6ab85486992ea6c8b203c2fb0bec5ef0251613a0 Merge: 3eef5abe7 e2b65d72c Author: Alan Garny Date: Mon Apr 18 14:48:45 2016 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3eef5abe7493f1dbebcc996221e65dfeeb62969e Author: Alan Garny Date: Mon Apr 18 14:48:28 2016 +0200 Some minor refactoring [ci skip]. commit e2b65d72c51aa4d12750c0e06df6372008388f6f Author: Alan Garny Date: Sat Apr 16 05:08:14 2016 +0200 Some minor cleaning up [ci skip]. commit 69a1b51c112f4d4caa9274981e1a385d50303293 Author: Alan Garny Date: Sat Apr 16 04:21:19 2016 +0200 Some minor cleaning up now that we have got the Qt 5.6 tests to work on all our supported platforms [ci skip]. commit d1b11ff295abc4c79504a100fb4f0dbf1801bd8c Author: Alan Garny Date: Sat Apr 16 04:16:52 2016 +0200 Tests: re-use QTEST_GUILESS_MAIN() (rather than QTEST_APPLESS_MAIN()). The move to QTEST_APPLESS_MAIN() for our tests seemed sensible, but... this didn'\''t account for the fact that we have some XML-based tests (COMBINESupport::tests and Core::mathmltests) and that this requires an application. So, rather than QTEST_APPLESS_MAIN(), we should use QTEST_GUILESS_MAIN() for at least those two tests, but in the end we might as well use QTEST_GUILESS_MAIN() for all of them (just in case for the future). Note #1: we don'\''t want to use QTEST_MAIN() since we want to be able to run our tests on Travis CI, which means that we cannot have a GUI. Note #2: interestingly enough, the issue with our XML-based tests only occurs on Windows. In other words, to use QTEST_APPLESS_MAIN() on Linux and OS X is fine in the sense that the tests pass while they crash on Windows. commit 97c4d7cabe04de55fa8e3fdb01952fe54c5807eb Author: Alan Garny Date: Fri Apr 15 13:28:33 2016 +0200 Some minor cleaning up [ci skip]. commit 90213b914a9d32a46392b5756fc58bc81583c424 Author: Alan Garny Date: Thu Apr 14 19:10:54 2016 +0200 Some minor cleaning up [ci skip]. commit 5c8fcfdeded8f40625fdf711f5ad90d2d2efcd6a Author: Alan Garny Date: Thu Apr 14 17:56:22 2016 +0200 Viewer: rename it to MathMLViewer (#940). commit e69fc443b194bc2a08a691ab1cbd1fc77578e1d3 Author: Alan Garny Date: Thu Apr 14 16:45:38 2016 +0200 Some minor cleaning up. commit 5942e706a8e11601074254fba23a47a8ccc1f309 Merge: d464ffd57 8755da061 Author: Alan Garny Date: Thu Apr 14 15:41:42 2016 +0200 Merge pull request #939 from opencor/issue938 Tests: use QTEST_APPLESS_MAIN() rather than QTEST_GUILESS_MAIN() (closes #938). commit 8755da061f93d2a398de35c4b3704d0a014b9dbd Author: Alan Garny Date: Thu Apr 14 15:11:01 2016 +0200 Tests: use QTEST_APPLESS_MAIN() rather than QTEST_GUILESS_MAIN() (#938). commit d464ffd578cd48c5c44db24a5d23eb1d9fec43e9 Author: Alan Garny Date: Thu Apr 14 14:46:23 2016 +0200 Some minor cleaning up [ci skip]. commit 0139345a0617fdc1b7d76ac4f0bffd667ef5d87a Author: Alan Garny Date: Wed Apr 13 18:28:13 2016 +0200 Travis CI: re-enabled OS X and Debug. commit 800e7edb043da83b32654f27acdf6eef720ba801 Author: Alan Garny Date: Wed Apr 13 18:20:38 2016 +0200 Travis CI: indeed, on Linux (Trusty), we have access to G++ 4.8.5. commit d9480267aece7fb345217e8899d621f9311c7d43 Author: Alan Garny Date: Wed Apr 13 18:15:41 2016 +0200 Travis CI: don'\''t, on Linux, retrieve the latest version of CMake anymore since the one available on Trusty is good enough. Also temporarily disable OS X and debug since we want to also check whether g++ is needed. commit df0c4242c695e44f34735abea68246d65ad0de3b Author: Alan Garny Date: Wed Apr 13 18:12:08 2016 +0200 Travis CI: reverting [ci skip]. commit a5cc0fb47a015e9117d334e771d1e04698f216cb Author: Alan Garny Date: Wed Apr 13 18:05:46 2016 +0200 Travis CI: checking the version of CMake that is currently being used. commit 5df7750fedc26aaddf88bae651dc76b4eaaaf797 Author: Alan Garny Date: Wed Apr 13 17:40:37 2016 +0200 Some minor cleaning up. commit 4d52ba2509e856d272d6a50f20cbfba8c7c2e2b4 Merge: b80f9ae2a 5407e4a8d Author: Alan Garny Date: Wed Apr 13 16:59:53 2016 +0200 Merge pull request #937 from opencor/issue936 libgit2: upgraded to version 0.24.1 (closes #936). commit 5407e4a8de276b6e61c3dfbac399fffa4b3525be Author: Alan Garny Date: Wed Apr 13 16:27:22 2016 +0200 libgit2: upgraded to version 0.24.1 (#936). commit 57720a9599a2a48ba494fea967db35834a4ae189 Author: Alan Garny Date: Wed Apr 13 16:17:05 2016 +0200 libgit2: some work towards upgrading to version 0.24.1 (#936). commit dc1b08a6266d04fcd84f5ec5c45451954d8faf44 Author: Alan Garny Date: Wed Apr 13 15:15:47 2016 +0200 libgit2: some work towards upgrading to version 0.24.1 (#936). commit b80f9ae2a3ccad97b465d28febb9e7be381a56af Author: Alan Garny Date: Wed Apr 13 14:56:31 2016 +0200 Slight update to the developer documentation [ci skip]. commit 69b7996569286ec4c20844ffd7f871f1af51a480 Author: Alan Garny Date: Mon Apr 11 17:29:21 2016 +0200 Some minor cleaning up [ci skip]. commit 41deb9d46f0dee471db75a99d5f2cc4c687d80f6 Author: Alan Garny Date: Mon Apr 11 15:34:04 2016 +0200 Some minor cleaning up [ci skip]. commit a411b7defe7aaabf17bac453728b9e138e0fc69a Author: Alan Garny Date: Mon Apr 11 14:34:26 2016 +0200 Renamed the plugin PhysiomeModelRepositoryWindow to PMRWindow (closes #935). commit e0d4a466add5ab612a45b98b953c677190328ca7 Author: Alan Garny Date: Mon Apr 11 11:30:56 2016 +0200 jQuery: upgraded to version 2.2.3 (closes #934). commit 9873f95193d85e6f5f3a1dcc9dc35c95473fb365 Author: Alan Garny Date: Sat Apr 9 14:41:04 2016 +0200 Some minor cleaning up [ci skip]. commit 49a7c43a4316e1e321081c75d3c13a4eec91366d Author: Alan Garny Date: Fri Apr 8 10:01:00 2016 +0200 PMR window: some CSS minor cleaning up [ci skip]. commit 71f933bbbeab70ad2cb649bd66d85337a51f7116 Author: Alan Garny Date: Fri Apr 8 09:54:56 2016 +0200 Busy widget: remove the semi-transparency option [ci skip]. It just doesn’t look ‘right’ from a GUI viewpoint. At the end of the day, we still have what we wanted in the first place, i.e. have the parent really unusable. Indeed, even though, in the PMR window, we do disable the web viewer, that viewer can still be used. However, now with the busy widget covering all of its parent (and using a transparent background for the non-busy part of its rendering), we are fine (i.e. the parent can really be considered ‘disabled’). commit 117980365d10c215e116614076ac365684cc1df4 Author: Alan Garny Date: Thu Apr 7 17:57:40 2016 +0200 Some minor cleaning up [ci skip]. commit 87975b0ae09f3d0622e377f098fc3d389b9f424b Author: Alan Garny Date: Thu Apr 7 16:05:07 2016 +0200 PMR window: make sure that we get an information the first time we try to show exposure files for an exposure that doesn'\''t have any [ci skip]. commit b36eb72d9799b4a8f9fbebcaf3aa0fdb089c31b9 Author: Alan Garny Date: Thu Apr 7 16:04:35 2016 +0200 Some minor cleaning up [ci skip]. commit ee76c078439bd5b0a4feab3c423a69f616836416 Author: Alan Garny Date: Thu Apr 7 10:49:01 2016 +0200 Some minor cleaning up [ci skip]. commit 0f55b1161d0ec2a6f95dcacb8f9988784c3f7035 Author: Alan Garny Date: Wed Apr 6 17:19:00 2016 +0200 Some minor cleaning up [ci skip]. commit 098ae5a2f29c8286b159706866eec0377cfded9f Author: Alan Garny Date: Tue Apr 5 18:59:16 2016 +0200 PMR window: fixed a small problem with exposure files not being added [ci skip]. Indeed, say that you had to retrieve the URL of a workspace and of an exposure file URL, and that the latter is retrieved first. Then, because our counter was still at 1, we didn’t add the exposure files… commit 9be9a2051084ad4c04917246f022f2e26a9fa356 Author: Alan Garny Date: Tue Apr 5 18:54:34 2016 +0200 Some minor cleaning up [ci skip]. commit 7f7c10b1ded8a4d2186d3a07984c59dfa52ce209 Author: Alan Garny Date: Tue Apr 5 18:45:42 2016 +0200 PMR window: improved showing/hiding of our busy widget [ci skip]. commit 0cefd88e1c10867e6c445c4c94f914e121822b18 Author: Alan Garny Date: Tue Apr 5 18:33:16 2016 +0200 Some minor cleaning up [ci skip]. commit 23ddd54bffd6ccbd93c21ac361e2215b067673de Author: Alan Garny Date: Tue Apr 5 15:54:59 2016 +0200 Busy widget: can now have a semi-transparent background. This is useful for our PMR window since a web-based widget is still usable even when disabled (!!). commit 5b7485909de159bdf6d902e589869ce3fa85b9ef Author: Alan Garny Date: Tue Apr 5 14:51:52 2016 +0200 Some minor cleaning up [ci skip]. commit eb653bdf50a91442a11baa58d7de8766e09df5ba Author: Alan Garny Date: Tue Apr 5 14:45:30 2016 +0200 Busy widget: now takes the size of its parent. The idea is to ensure that if it has a parent that cannot be disabled (e.g. QWebEngine apparently), then we cannot still interact with its parent by mistake… commit 4459379d378f4a835106d0df7bb4b681683d9fd5 Author: Alan Garny Date: Tue Apr 5 13:24:55 2016 +0200 Some minor cleaning up [ci skip]. commit e3dbcff45e24188eb85968ab9cca5bb7bb80e1d0 Author: Alan Garny Date: Tue Apr 5 11:45:29 2016 +0200 Some minor refactoring of our busy widget related classes [ci skip]. commit 058058cff769d63f161fc4651ff6de4d794ceb12 Author: Alan Garny Date: Tue Apr 5 11:25:04 2016 +0200 Some minor cleaning up [ci skip]. commit c5147b64b98e806c66375c4ada0335fbae7d20bd Author: Alan Garny Date: Tue Apr 5 11:02:52 2016 +0200 PMR window: allow the cloning of a workspace even if it doesn'\''t contain an exposure file [ci skip]. This is the case with the “Andre playing with nested tasks in SED-ML” exposure (see https://models.physiomeproject.org/e/c2). commit 1a0b5b510bf4c18a8ae488c3d0b240917cdf7294 Author: Alan Garny Date: Tue Apr 5 10:53:06 2016 +0200 Some minor cleaning up [ci skip]. commit a9b3d3f2f01ce986824f06cc873f04f29ba7d5e4 Merge: 9df953510 40a002ed3 Author: Alan Garny Date: Mon Apr 4 13:48:33 2016 +0200 Merge pull request #932 from opencor/issue930 PMR window: now properly handle JSON responses from PMR (#932). commit 40a002ed370c867ec615afb6ffaf2a94bcc0afae Author: Alan Garny Date: Mon Apr 4 13:11:16 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930). commit 30275b6713882796dbbda016c39b5c13aaa569e7 Author: Alan Garny Date: Mon Apr 4 12:54:44 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930). commit 41a12beb08abe6172e8415d011d08e7d3cc80f99 Author: Alan Garny Date: Mon Apr 4 11:45:46 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit d456b1b9a88ae67a1f74055a76c069e3dc4a2e2b Merge: 5dab02a3d 9df953510 Author: Alan Garny Date: Mon Apr 4 11:12:41 2016 +0200 Merge branch '\''master'\'' into issue930 [ci skip]. commit 9df953510a885bf05045cb3ab1210f8004c54f4d Author: Alan Garny Date: Mon Apr 4 11:12:24 2016 +0200 Some minor cleaning up [ci skip]. The idea is, as much as possible, not to use the ‘default’ section in a ‘switch’ statement. Indeed, it’s only too easy to overlook a particular ‘case’, especially when new options become available to the type that is ‘switched’. commit 5dab02a3d577a5e6d5ba0ba8078027ad1c2157b8 Author: Alan Garny Date: Mon Apr 4 10:57:48 2016 +0200 Some minor cleaning up [ci skip]. commit 256293d9d65062d7e0220b192da79929848f818b Author: Alan Garny Date: Sun Apr 3 20:07:26 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit 8d91dc6cd66808999e2661a31ece95156822d925 Author: Alan Garny Date: Sun Apr 3 20:01:34 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit 69decab40bbdd977d252e4031da14f37ea6806cd Author: Alan Garny Date: Sun Apr 3 19:20:04 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit 88830833ba49769fe92342927ebbf13c87fa90a1 Author: Alan Garny Date: Sun Apr 3 18:03:18 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit ab8fcfac73aea648f34ccd6e0ac5c48548f33947 Author: Alan Garny Date: Sun Apr 3 17:42:46 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit c9df1b0d2be476121a1671bc65e1dc327c8b52f1 Author: Alan Garny Date: Sun Apr 3 16:45:51 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit be79d141d8185a2b1dc425b12c978f88507bb91a Author: Alan Garny Date: Sun Apr 3 03:04:43 2016 +0200 Some minor cleaning up [ci skip]. commit 63f9360e09cdb53e184a815a9b212997e59fcc82 Author: Alan Garny Date: Sun Apr 3 02:19:56 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit f90e95c8b53df464d73495da754a1cc4e0e1b705 Author: Alan Garny Date: Sun Apr 3 02:19:32 2016 +0200 Some minor cleaning up [ci skip]. commit 3a0aa1e7c8f6888fa992b979027db27ca47e0331 Author: Alan Garny Date: Sun Apr 3 01:06:47 2016 +0200 Some minor cleaning up [ci skip]. commit 64c06ce958e8fe2c7c128c50c20698acb897096a Author: Alan Garny Date: Sun Apr 3 00:52:46 2016 +0200 Some minor cleaning up [ci skip]. commit 49eaa959baa68db73070c074ef823fdc63990da9 Author: Alan Garny Date: Sun Apr 3 00:34:41 2016 +0200 Some minor cleaning up [ci skip]. commit 4dad00ffc7f62c96750dee361ce4ade415c87c98 Author: Alan Garny Date: Sun Apr 3 00:29:48 2016 +0200 Some minor cleaning up [ci skip]. commit 9c3a7623eae61fcd91a36e4d05444f3c8cdcea5f Author: Alan Garny Date: Sat Apr 2 21:10:47 2016 +0200 Some minor cleaning up [ci skip]. commit cfbe0ba493ec1e26b3703957685069ca61115ce9 Author: Alan Garny Date: Sat Apr 2 21:06:36 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit 1f53f5032d94e23692792c18ab986c8cdf177a6e Author: Alan Garny Date: Sat Apr 2 21:06:13 2016 +0200 Some minor cleaning up [ci skip]. commit 156a19963f52b7b155aa0d9ad148abf6c13f7319 Author: Alan Garny Date: Sat Apr 2 20:20:47 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit 633038b4a14820cc26ac08ea2a2483ed46032012 Author: Alan Garny Date: Sat Apr 2 20:08:45 2016 +0200 Some minor cleaning up [ci skip]. commit 80fb8e54801bfc27ec819883de6739016757a80b Author: Alan Garny Date: Fri Apr 1 18:53:53 2016 +0200 Some minor cleaning up [ci skip]. commit 0c3edb8cfd8709bc7b2dd013b8158ad37f426ba9 Author: Alan Garny Date: Fri Apr 1 18:49:00 2016 +0200 Some minor cleaning up [ci skip]. commit 7ff994769f9a1eca75bbdb7fd2cdf2c6ac71c5a6 Author: Alan Garny Date: Fri Apr 1 17:58:18 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit a832e2f3d43652aa1ec5bc3758a8720533126b60 Author: Alan Garny Date: Fri Apr 1 17:39:28 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit b8cca80ded569d0af2a81c0646690482c085b3d7 Author: Alan Garny Date: Fri Apr 1 17:21:47 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR (#930) [ci skip]. commit dd5bc20da523a148e508fa25bed72c15e3458b91 Author: Alan Garny Date: Fri Apr 1 16:21:05 2016 +0200 Some minor cleaning up [ci skip]. commit 0324f36ac4224fc92ffd1461feb4a72292d6b459 Author: Alan Garny Date: Thu Mar 31 10:54:44 2016 +0200 New snapshots. commit 630403ccf004be21c365f04761dbeb8b22755a3d Author: Alan Garny Date: Thu Mar 31 10:52:52 2016 +0200 Single Cell view: clear all of our simulation data upon reloading [ci skip]. commit 573152f8b6055f627dd9323264d1a6c8afe7cfb7 Author: Alan Garny Date: Thu Mar 31 09:18:50 2016 +0200 Travis CI: the OS X queue seems to have been cleared, so re-enabling OS X builds. commit 5c2d6086f7fc1522b344434430d61a213ff4fd50 Author: Alan Garny Date: Wed Mar 30 17:16:34 2016 +0200 New snapshots. commit 39682e8376b5c32494f8587cb14292571ab45eb7 Author: Alan Garny Date: Wed Mar 30 17:15:24 2016 +0200 Slight updates to the user documentation [ci skip]. commit 84374cc0f0300886b6884e466fba995bbbd9d517 Merge: 81c4b98ce ff27aafb0 Author: Alan Garny Date: Wed Mar 30 16:51:22 2016 +0200 Merge pull request #929 from opencor/issue887 File handling: now detect when one of a file'\''s dependencies has been modified and offer to reload the file (closes #887). commit 81c4b98ce32fa8c60c885f6dcb908daf666603e9 Author: Alan Garny Date: Wed Mar 30 16:47:24 2016 +0200 Slight updates to the user documentation [ci skip]. commit ff27aafb0ee4ab13fa3691ab78f3aaebe4748e77 Author: Alan Garny Date: Wed Mar 30 16:34:03 2016 +0200 Travis CI: temporarily disabling OS X builds. For some reasons, everything works fine here, but the OS X debug PR build fails. Also, the build log is very slow at the moment, so temporarily disabling OS X builds. commit 5eb2058a4a5fd389db4f0b30c60f5b94c27d8b81 Merge: 1b05e4244 8b7fe881e Author: Alan Garny Date: Wed Mar 30 16:32:33 2016 +0200 Merge branch '\''master'\'' into issue887 [ci skip]. commit 8b7fe881e05defb0e9e670fa5956084053c4d36d Author: Alan Garny Date: Wed Mar 30 16:23:01 2016 +0200 Slight updates to the user documentation [ci skip]. commit 1b05e4244c3800f6c13ae8e56a5ebc5051364b8a Merge: bdd9c983a f4c37710b Author: Alan Garny Date: Wed Mar 30 15:17:03 2016 +0200 Merge branch '\''master'\'' into issue887. commit f4c37710bf18a26ef5f29fdd311f6a1eff29bc52 Author: Alan Garny Date: Wed Mar 30 15:13:31 2016 +0200 Single Cell view: clear all of our simulation data upon reloading [ci skip]. commit 5448fe119390dfa5ec1e58f7e26f6f84e4fa447a Author: Alan Garny Date: Wed Mar 30 15:02:54 2016 +0200 General: now use a preferred view to open a particular type of file (#925) [ci skip]. commit 4cda0de1660d8043b910095f64429f433040a5a5 Author: Alan Garny Date: Wed Mar 30 15:00:15 2016 +0200 Some minor cleaning up [ci skip]. commit bdd9c983a25474fff23599aaf7c99666bff6b25a Author: Alan Garny Date: Wed Mar 30 14:42:32 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887). commit d31dce9bc1bc399c76542ad6a5b437fb285b3886 Author: Alan Garny Date: Wed Mar 30 14:24:14 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887). commit 8d72241b1d8c0c56d62957fd853760f06aa0f51b Author: Alan Garny Date: Wed Mar 30 14:21:08 2016 +0200 Some minor cleaning up [ci skip]. commit 5adb7c64039a1b2359c7ac49360a5f57d6c06053 Author: Alan Garny Date: Wed Mar 30 14:12:47 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit fe71ebf9b698b44f50874362e4c43b56a1d19749 Author: Alan Garny Date: Wed Mar 30 11:26:34 2016 +0200 Some minor cleaning up [ci skip]. commit d75d50f99c3073a1dfd7d4245cfd422d9fc5e4c5 Author: Alan Garny Date: Wed Mar 30 11:24:13 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit 6b09ea572f7b52e0eb1660989e8a90a30c107b10 Author: Alan Garny Date: Wed Mar 30 11:18:55 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit d39a318435781c6ae8ad506593c89dbedcdda628 Merge: 8fb0e09a8 3166c07f4 Author: Alan Garny Date: Wed Mar 30 11:08:20 2016 +0200 Merge branch '\''master'\'' into issue887 [ci skip]. commit 8fb0e09a89fe9fd3604e47f3f137b3a676e8daf8 Author: Alan Garny Date: Wed Mar 30 10:41:55 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit 6b41654359cd25df2674ae5d6e03f37864c43eab Author: Alan Garny Date: Wed Mar 30 10:18:38 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit 9a947bb72ad7ce9a3f732a25e1f36b14ec76af43 Author: Alan Garny Date: Wed Mar 30 10:03:17 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit c1ba75adffcb2fa41c401b1e2d483529cdd88bef Author: Alan Garny Date: Wed Mar 30 09:46:22 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. commit 65be7cda85fc40e48182bf00b11149eddca7a2b6 Author: Alan Garny Date: Wed Mar 30 09:10:28 2016 +0200 Some minor cleaning up [ci skip]. commit 393712879042ceecba518bc405120f967e9615e4 Author: Alan Garny Date: Tue Mar 29 19:25:49 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. Now reload a view if a file has actually changed (i.e. not when only one or several of its dependencies has changed). commit 48890d62b8e8c630a06bee340285daf8ec1b387a Author: Alan Garny Date: Tue Mar 29 18:26:45 2016 +0200 Some minor cleaning up [ci skip]. commit 38583a515e635def5f7de10d8cd3f2c85af957b9 Author: Alan Garny Date: Tue Mar 29 18:23:41 2016 +0200 Some minor cleaning up [ci skip]. commit 1451c49ab01ec81602b8947e8cca339521a81498 Author: Alan Garny Date: Tue Mar 29 18:16:57 2016 +0200 File Organiser window: automatically remove from the organiser any file that has been physically deleted [ci skip]. commit 3166c07f4b64894c86d744b91fc4da94bcbb733f Author: Alan Garny Date: Tue Mar 29 16:07:28 2016 +0200 Some minor cleaning up [ci skip]. commit deaffbc0abab03daeba6861b61656a55896b94dc Author: Alan Garny Date: Tue Mar 29 15:47:03 2016 +0200 Some minor cleaning up [ci skip]. commit a0c750c6afa21b5fd2804433a02da426cc4452a3 Merge: f497e5fdf 8ab6c7312 Author: Alan Garny Date: Tue Mar 29 13:24:46 2016 +0200 Merge branch '\''master'\'' into issue887. commit 8ab6c73127b155a81c2eefe02fdfc07f10b4d625 Author: Alan Garny Date: Tue Mar 29 13:21:05 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. This is now working (incl. the tests), so we can re-enable the Linux builds. commit fd9bef02408cd503368367ec8e32ddbc05907f32 Author: Alan Garny Date: Tue Mar 29 13:08:24 2016 +0200 Some minor cleaning up [ci skip]. commit 6b4d7684eca070e8677ce4578ec71da13d3ca5ae Author: Alan Garny Date: Tue Mar 29 13:01:48 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit 49c9b1c09294ddcfe6ba0b6c5f148b008fc5fcd5 Author: Alan Garny Date: Tue Mar 29 11:37:49 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit 760f7cd633b8765949972b5ddbdabfecee9358b7 Author: Alan Garny Date: Tue Mar 29 10:41:56 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit 2505b0ed6f3d5c5c924bb3cf9d9b1ea617f3b2aa Author: Alan Garny Date: Tue Mar 29 10:32:40 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit f96ea5b09afa85e1f5ff5752abcbd674d8c62914 Author: Alan Garny Date: Tue Mar 29 10:28:48 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit e51440c2d307ba37a7f58de0728dc37c43e022e9 Author: Alan Garny Date: Tue Mar 29 10:24:25 2016 +0200 Travis CI: upgraded to CMake 3.5.1 on Linux [ci skip]. commit e4e78534c526fd69f3b891112bec6c849295a2ad Author: Alan Garny Date: Tue Mar 29 10:19:42 2016 +0200 Travis CI: trying to use an '\''old'\'' version of Qt (Qt 5.5) on OS X. commit f497e5fdfa94fc1fc3854b5be84a9face11f597b Merge: 8b313923e b070fe329 Author: Alan Garny Date: Mon Mar 28 11:42:49 2016 +0200 Merge branch '\''master'\'' into issue887 [ci skip]. commit b070fe329c008d6ea539939a30c6875ecbdf6ab8 Merge: 955beccc3 807ca2e3f Author: Alan Garny Date: Mon Mar 28 11:35:29 2016 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 955beccc3c552d91b008b5392c9b00b9343de9f5 Author: Alan Garny Date: Mon Mar 28 11:33:38 2016 +0200 Single Cell view + SED-ML: now handle the case where a SED-ML file is generated on a different drive from the CellML file it refers (closes #928). commit 807ca2e3f95718ec3c157818749d449a2312d04d Author: Alan Garny Date: Mon Mar 28 11:33:38 2016 +0200 Single Cell view + SED-ML: now handle the case where a SED-ML file is generated on a different drive from the CellML file it refers (closes #928). commit 8b313923e3bf2d1ecbcb806a3dedabd00eff4550 Author: Alan Garny Date: Sun Mar 27 20:44:10 2016 +0200 File handling: some work on detecting when one of a file'\''s dependencies has been modified and offer to reload the file (#887) [ci skip]. This now works fine with CellML files. Now need to do the same with SED-ML files. commit 0ed6cffd9b4941ff33cdbd6870c589fe40b74d11 Author: Alan Garny Date: Sat Mar 26 14:55:02 2016 +0100 Make sure that our status bar is shown/hidden, depending on its action'\''s status. Indeed, for some unclear reasons, to open/handle a file / OpenCOR URL, with OpenCOR not running in the first place, results in the status bar not being shown (assuming it has to be shown). So, we make sure that the status bar is shown/hidden, as needed... commit 6897c59fa256ac1bbf8284523d2c2e5d79e14863 Author: Alan Garny Date: Sat Mar 26 14:49:35 2016 +0100 Some minor cleaning up [ci skip]. commit 605dfebd9752ce23394b6a99a26b0c8d3648501f Author: Alan Garny Date: Fri Mar 25 23:33:12 2016 +0100 General: can now specify whether we want MIME types for opening or saving a file (this is indeed important for the Single Cell view where we want to be able to open CellML/SED-ML files and COMBINE archives, but only save CellML files). Updated the developer documentation. Also some minor cleaning up [ci skip]. commit 5a3db444541da50856f8a52ff83e0480518cef81 Author: Alan Garny Date: Fri Mar 25 22:00:43 2016 +0100 General: sort our filters [ci skip]. commit 05ce6a6b247d37c2ea48eaec7d2e51e31688352b Author: Alan Garny Date: Fri Mar 25 21:55:03 2016 +0100 Fixed a small issue that got introduced in commit 55da5ee [ci skip]. commit 2b9a4b762ef38c754deeae08c8d295bf1eb0093e Author: Alan Garny Date: Fri Mar 25 20:17:36 2016 +0100 General: now, by default, we open a file using the ‘All Files’ filter, while we use the first supported filter when saving a file (#927) [ci skip]. commit a008f084b5e769715ebc96894da3bed63d725dc7 Author: Alan Garny Date: Fri Mar 25 20:14:51 2016 +0100 General: now, by default, we open a file using the ‘All Files’ filter, while we use the first supported filter when saving a file (#927). commit e3d0da75c099ba30e9c19cceec52dcd4aa826dfe Author: Alan Garny Date: Fri Mar 25 20:06:03 2016 +0100 Some minor cleaning up [ci skip]. commit d1c693ce4f9c656c95c94ca6d51a07050533bfe5 Author: Alan Garny Date: Fri Mar 25 19:21:20 2016 +0100 Some minor cleaning up [ci skip]. commit 7f8e0fc760c3ee8b3cfd1cebc831841e92fd45b4 Merge: fc213203f a90d8f25b Author: Alan Garny Date: Fri Mar 25 18:35:12 2016 +0100 Merge pull request #926 from opencor/issue925 General: now use a preferred view to open a particular type of file (closes #925). commit a90d8f25b5ab4da6932623910bde791c360f2bdf Author: Alan Garny Date: Fri Mar 25 18:06:01 2016 +0100 General: now use a preferred view to open a particular type of file (#925). commit 736617095fdb2c8c2efb12037fce4789b5eb5a85 Merge: d0e43a3c1 fc213203f Author: Alan Garny Date: Fri Mar 25 17:24:40 2016 +0100 Merge branch '\''master'\'' into issue925 [ci skip]. commit fc213203f31ad30367749bb8921985979e6f000f Author: Alan Garny Date: Fri Mar 25 17:20:11 2016 +0100 Some minor cleaning up [ci skip]. To get things to build on Windows… commit d0e43a3c163d7d40448b5fb1d25486962a0e5091 Author: Alan Garny Date: Fri Mar 25 17:06:19 2016 +0100 General: some work on using a preferred view to open a particular type of file (#925) [ci skip]. commit ad0d906a897b8e50f0d6fa8161dd3c5d1061c8b0 Author: Alan Garny Date: Fri Mar 25 16:06:38 2016 +0100 Some minor cleaning up [ci skip]. commit de91fff975e3ad92b7101ac24109930d0600c57b Author: Alan Garny Date: Fri Mar 25 14:34:29 2016 +0100 Some minor cleaning up [ci skip]. commit 80f59eee32daf1d26c09bcb8336cbf91ac21849b Author: Alan Garny Date: Fri Mar 25 14:11:19 2016 +0100 Some minor cleaning up [ci skip]. commit ab4613cab1fa61cc89b2263fdb2ba7e2d42c2ce7 Author: Alan Garny Date: Fri Mar 25 14:08:08 2016 +0100 Some minor cleaning up [ci skip]. commit b9577ebeb79fabc3647041ab5273db1fa38b889f Author: Alan Garny Date: Fri Mar 25 14:05:54 2016 +0100 Some minor cleaning up [ci skip]. commit af0733c6667d51c9ffe5da1d04c39f68a226732e Author: Alan Garny Date: Fri Mar 25 11:20:52 2016 +0100 Some minor cleaning up [ci skip]. commit 475d30677d45fc241c276b9fb46b914b6e89e5e6 Author: Alan Garny Date: Fri Mar 25 10:15:35 2016 +0100 Some minor cleaning up [ci skip]. commit 9542ace9e1d45a211f73214f4e52d83ba9fb350f Author: Alan Garny Date: Thu Mar 24 17:33:57 2016 +0100 Some minor cleaning up [ci skip]. This is to get opencor://openFiles/FileName1|FileName2|FileName3 to work properly. commit 8ac02790571bc554610de2ce3252a355f8b2b6ff Author: Alan Garny Date: Thu Mar 24 14:56:49 2016 +0100 Single Cell view: fixed a problem with OpenCOR crashing when saving a '\''new'\'' CellML file (closes #919). commit 8afeea79360acf411710482e314e3406b6342b6a Author: Alan Garny Date: Thu Mar 24 14:52:17 2016 +0100 Some minor cleaning up [ci skip]. commit f3b57832114d023def3367f7fef77583e9fee454 Author: Alan Garny Date: Thu Mar 24 14:34:11 2016 +0100 Some minor cleaning up [ci skip]. commit e57e264fbff936c404dcf36b7c4a1a9d37c4e221 Author: Alan Garny Date: Thu Mar 24 14:07:07 2016 +0100 jQuery: upgraded to version 2.2.2 (closes #924). commit bb135e0d773b2ed60e2d7e62c9c6b0f2b88f459a Author: Alan Garny Date: Thu Mar 24 09:30:35 2016 +0100 Slight update to the developer documentation [ci skip]. commit 0db89bf928b75a6fd9ce1c7af56eea097523e879 Author: Alan Garny Date: Sat Mar 19 16:53:35 2016 +0100 Some minor cleaning up [ci skip]. commit 990dcc7a0be6abbcbb6a841f200403bb3e1074fb Author: Alan Garny Date: Sat Mar 19 15:41:48 2016 +0100 Travis CI: now use the (beta) Ubuntu 14.04 LTS build environment. commit 14f5be5910e9c89c0f11ed2818a08312e89c0806 Author: Alan Garny Date: Sat Mar 19 15:31:11 2016 +0100 Travis CI: now use the (beta) Ubuntu 14.04 LTS build environment. commit 26d3c11814d979b1a5673e2d8883eee5ff45ab6b Author: Alan Garny Date: Sat Mar 19 15:22:32 2016 +0100 Travis CI: now use the (beta) Ubuntu 14.04 LTS build environment. commit 861f6b2419b43d68379c3e573166482af4732e8b Author: Alan Garny Date: Sat Mar 19 15:02:54 2016 +0100 Travis CI: now use the (beta) Ubuntu 14.04 LTS build environment. commit f45c033a46b8b76b8f5c1b885bd1acd1798726d9 Author: Alan Garny Date: Sat Mar 19 14:59:58 2016 +0100 Travis CI: now use the (beta) Ubuntu 14.04 LTS build environment. commit 56277d928ec2870e48dd866d86d8eaa093efc714 Author: Alan Garny Date: Sat Mar 19 14:54:22 2016 +0100 Travis CI: now use CMake 3.5. commit 84fe1b8104b3621c9087fd47b99b98e04a82ac3f Author: Alan Garny Date: Sat Mar 19 14:34:40 2016 +0100 Travis CI: homebrew now uses Qt 5.6, which doesn'\''t have Qt WebKit anymore, so simply disable OS X for now. commit b91e07172890c530cc31cfaf94524e93f79042d1 Author: Alan Garny Date: Sat Mar 19 14:10:40 2016 +0100 Refer to Peter Hunter’s CellML/OpenCOR/PMR tutorial (closes #654). commit d25a87fb4ea62c94baa17f18dc83628116dfddc5 Author: Alan Garny Date: Sat Mar 19 13:57:51 2016 +0100 Some minor cleaning up [ci skip]. commit e729da718946b1c43d92a829997108cc667cd059 Author: Alan Garny Date: Fri Mar 18 17:22:33 2016 +0100 Some minor cleaning up [ci skip]. commit 1d263d98bc3fad601ed7feba4b4e467576923dc5 Author: Alan Garny Date: Fri Mar 18 15:48:22 2016 +0100 Single Cell view + SED-ML: fixed a problem with opening a CellML model from a SED-ML file not working when there are spaces in the file name (closes #922). commit 3c86e1a82a5aa5eaa66b2f961c662390a654b5a4 Author: Alan Garny Date: Fri Mar 18 15:43:45 2016 +0100 Some minor cleaning up [ci skip]. commit 3fb533efba17716c0465a903cab758f6e7bf6de6 Author: Alan Garny Date: Fri Mar 18 15:26:56 2016 +0100 Some minor cleaning up [ci skip]. commit 9a0d290675e435c99121405e7bba091a066a0c25 Author: Alan Garny Date: Thu Mar 17 18:13:24 2016 +0100 CellML Text view: fixed a small problem with saving a new CellML file [ci skip]. commit 169a7bb79d0c4d43669c3f72b7dc31f87e3e50bc Author: Alan Garny Date: Thu Mar 17 18:10:35 2016 +0100 Some minor cleaning up [ci skip]. commit be07f224c102243ffe65c6fb28d86ee0d4c9f8f1 Author: Alan Garny Date: Thu Mar 17 17:36:37 2016 +0100 Single Cell view + SED-ML: fixed a small problem with trying to close OpenCOR when opening a SED-ML file [ci skip]. commit f6c7fb95522bc42aa8d71c440529fa9e11d96846 Author: Alan Garny Date: Thu Mar 17 17:35:51 2016 +0100 Some minor cleaning up [ci skip]. commit f0b0d0ffd5325aa342413968560d09a7a0110403 Author: Alan Garny Date: Thu Mar 17 17:27:05 2016 +0100 Some minor cleaning up [ci skip]. commit ce534b86982378efc48f431e673d648b368fba81 Merge: e3c8de4d7 45ca46f92 Author: Alan Garny Date: Thu Mar 17 17:26:27 2016 +0100 Merge pull request #921 from opencor/issue920 Single Cell view + SED-ML: fixed an issue with boolean solver properties not being correctly retrieved from a SED-ML file (closes #920). commit e3c8de4d7f508e10b28cea1c1e057e37caa0ea23 Author: Alan Garny Date: Thu Mar 17 16:57:32 2016 +0100 Slight update to the downloads page [ci skip]. commit 45ca46f923a39ca18e09865f8e09aef147e13df9 Author: Alan Garny Date: Thu Mar 17 16:46:51 2016 +0100 Single Cell view + SED-ML: fixed an issue with a different behaviour being observed simulating a CellML model directly vs a SED-ML file (#920). commit 5f51fcd1c136bc83a5b5da3f24fb7db22e5af5de Author: Alan Garny Date: Wed Mar 16 14:20:07 2016 +0100 Slight update to the developer documentation [ci skip]. commit d8637b07acee0e351e5af3daba86fda0193848c5 Author: Alan Garny Date: Tue Mar 15 23:55:40 2016 +0100 Core plugin: fixed a small problem with the tab icon used for a(n unzipped) file that has been deleted [ci skip]. Say that you have open a local OMEX file containing a SED-ML file. Say now that you open the CellML file associated with the SED-ML file. From there, close the OMEX file. Now, the tab icon for the CellML file will be a lock while there should be no icon. commit ffecdf0b3dd8a04359a0ffef830bab211473ab61 Author: Alan Garny Date: Mon Mar 14 22:12:38 2016 +0100 Some minor cleaning up [ci skip]. commit 37c6445b7770aaef9b58108d8161c1ea6d1c7612 Author: Alan Garny Date: Mon Mar 14 21:59:53 2016 +0100 Single Cell view + SED-ML: fixed a problem with not being able to open, close and re-open a remote CellML file associated with a SED-ML file (closes #918). commit 93f99573083eb5740f1f3faa33ca3dc5096a3abf Author: Alan Garny Date: Thu Mar 10 14:37:02 2016 +0100 Slight update to the developer documentation [ci skip]. commit f2e674a9d467f13e21ae78190768c624198b35f2 Author: Alan Garny Date: Thu Mar 10 14:07:08 2016 +0100 Some minor cleaning up of the documentation [ci skip]. commit ff70a9e6e271c06ca10a692fb7a50ddfaea56ee7 Author: Alan Garny Date: Thu Mar 10 11:49:08 2016 +0100 Some minor cleaning up of the documentation [ci skip]. Mainly replaced http:// with https:// wherever possible. commit 24e176292a0c7cd3e995059f18436e373c0cee2b Merge: ed8b1e277 4a0fc192e Author: Alan Garny Date: Wed Mar 9 17:14:46 2016 +0100 Merge pull request #917 from opencor/issue916 QtSingleApplication: now use the version from Qt Solutions and not that from Qt Creator (closes #916). commit 4a0fc192eeb694d34d425506ec7e8707739f4da1 Author: Alan Garny Date: Wed Mar 9 16:32:57 2016 +0100 QtSingleApplication: now use the version from Qt Solutions and not that from Qt Creator (#916). commit ed8b1e27797b8032d1bd0a7ace4a66c57deeeecb Merge: d329e9698 7e93c278b Author: Alan Garny Date: Wed Mar 9 14:29:01 2016 +0100 Merge pull request #915 from opencor/issue914 libgit2: upgraded to version 0.24 (closes #914). commit 7e93c278bf3f1ea311bd6314d2b18417c8c82865 Author: Alan Garny Date: Wed Mar 9 13:55:17 2016 +0100 libgit2: some work towards upgrading to version 0.24 (#914). commit 318110008b373bdef720cf08164a4ad2da747f58 Author: Alan Garny Date: Wed Mar 9 13:45:11 2016 +0100 libgit2: some work towards upgrading to version 0.24 (#914). commit 8afc629a89ef48b6771b9e725059f327659715c6 Author: Alan Garny Date: Wed Mar 9 13:38:52 2016 +0100 libgit2: some work towards upgrading to version 0.24 (#914) [ci skip]. commit 1a70ca2891e7b0daaaf2f384087c23cca9fa6e6d Author: Alan Garny Date: Wed Mar 9 13:23:57 2016 +0100 libgit2: some work towards upgrading to version 0.24 (#914) [ci skip]. commit 2fce2954c645e21d4f208ae06ca07e0586c4ef47 Author: Alan Garny Date: Wed Mar 9 13:12:03 2016 +0100 libgit2: some work towards upgrading to version 0.24 (#914) [ci skip]. commit d329e96987c6f71c51682ca8235187e0c7dca068 Author: Alan Garny Date: Wed Mar 9 11:37:44 2016 +0100 OpenSSL: upgraded to version 1.0.2g (#910). commit 629e2bc085078ce5942da44b7cacce250f7b78fa Author: Alan Garny Date: Wed Mar 9 11:32:28 2016 +0100 Some minor cleaning up [ci skip]. commit 2441708cc50615e1356cd1e6e0c1b19d74a60819 Author: Alan Garny Date: Tue Mar 8 14:19:29 2016 +0100 Make sure that the tests pass on Windows 10 when using Qt 5.4.2 [ci skip]. commit 5887569d681411f1531602bd7fccf1989ddbf121 Author: Alan Garny Date: Mon Mar 7 17:30:28 2016 +0100 Some minor cleaning up [ci skip]. commit a0a3c500090c7639a494422246d319313906c83f Author: Alan Garny Date: Mon Mar 7 17:09:44 2016 +0100 Some minor cleaning up [ci skip]. commit c169b853346bf08cbbe79f5d639cc16c3a612f8a Author: Alan Garny Date: Mon Mar 7 16:42:41 2016 +0100 Some minor cleaning up [ci skip]. commit cdfbd387fdfd62e88f1de2d8c74315a87f44f711 Author: Alan Garny Date: Mon Mar 7 16:09:21 2016 +0100 Some minor cleaning up [ci skip]. commit 8040f5c7beb7f0a6c543eda3e906dd538386525b Author: Alan Garny Date: Mon Mar 7 16:09:13 2016 +0100 Some minor cleaning up [ci skip]. commit 2bba6152348f5a51cd17f2388ea3a3105236c846 Author: Alan Garny Date: Mon Mar 7 15:43:53 2016 +0100 Some minor cleaning up [ci skip]. commit 3884fc01ec934d5b017d880a4ab04ab5ff5d97ed Author: Alan Garny Date: Mon Mar 7 14:58:19 2016 +0100 Some minor cleaning up [ci skip]. commit be2b4549d4258fb0e40597f89dd1512cadf6ee91 Author: Alan Garny Date: Mon Mar 7 14:51:16 2016 +0100 Some minor cleaning up [ci skip]. commit 81b708f088b98a865825b8a098bad86ac4937cc4 Author: Alan Garny Date: Sat Mar 5 01:06:21 2016 +0100 Some minor cleaning up [ci skip]. commit 96bba1265815ff9e8ce66d54812434794dbc3b40 Author: Alan Garny Date: Fri Mar 4 16:57:10 2016 +0100 Some minor cleaning up [ci skip]. commit 03850ae2a9588245aabc6d499e19f972a4807550 Author: Alan Garny Date: Wed Mar 2 11:38:28 2016 +0100 Fixed a small problem with trying to run another instance of OpenCOR [ci skip]. commit c9e35717aac3aeac916ffefebcefee6e79f5a3e5 Merge: cf55b28eb 810d46bfb Author: Alan Garny Date: Tue Mar 1 16:13:13 2016 +0100 Merge pull request #911 from opencor/issue909 OpenCOR URL scheme: fixed a problem with OpenCOR firing up on '\''old'\'' versions of OS X, but not opening the CellML/SED-ML file (closes #909). commit cf55b28eb3eb949a8fc962066946c19b5cd17527 Author: Alan Garny Date: Tue Mar 1 15:35:35 2016 +0100 Slight updates to our downloads pages [ci skip]. commit 810d46bfbd205353a8a7aa2a44880d8fd8164530 Author: Alan Garny Date: Tue Mar 1 15:28:28 2016 +0100 OpenCOR URL scheme: fixed a problem with OpenCOR firing up on '\''old'\'' versions of OS X, but not opening the CellML/SED-ML file (#909). commit 3eb8a4d3254416cda4ebba5df9c4d9c12ee03189 Author: Alan Garny Date: Tue Mar 1 11:47:06 2016 +0100 Have a URL scheme handler for OpenCOR (#903) [ci skip]. On OS X, to have CFBundleIdentifier (in Info.plist) set to “ws.opencor” is not enough. Indeed, we may have several copies of OpenCOR on someone’s system. So, OS X will choose whichever one it thinks is ‘right’. So, to make things really unique, we add OpenCOR’s version, i.e. “ws.opencor.${VERSION}”. commit 4f12256c7e2249c885ae5a2f79f78c3650939910 Author: Alan Garny Date: Mon Feb 29 13:53:25 2016 +0100 Some minor cleaning up [ci skip]. commit 95e78e2ade3b64067b6fd3ad1f8a0519fc925d88 Author: Alan Garny Date: Mon Feb 29 09:55:49 2016 +0100 Some minor cleaning up [ci skip]. commit d93d8de21902933fced39fe4132f76070083334c Author: Alan Garny Date: Sun Feb 28 11:09:27 2016 +0100 Some cleaning up (here and there) and some slight improvement (see MainWindow::handleArguments()) to the way we handle arguments that are passed to OpenCOR [ci skip]. commit e2068e8c6256b7c290f70de57fbc89443ffe6193 Author: Alan Garny Date: Sat Feb 27 21:09:50 2016 +0100 New snapshots. commit 9bfdab5dcc2434a95878fb1a6fabdeae4b2ac772 Merge: e716f2ae7 84e69d232 Author: Alan Garny Date: Sat Feb 27 21:06:42 2016 +0100 Merge pull request #907 from opencor/issue903 Now have a URL scheme handler for OpenCOR (closes #903). commit e716f2ae73266de2191c39c561354895157181d2 Author: Alan Garny Date: Sat Feb 27 20:43:10 2016 +0100 Slight updates to the What is new and Downloads pages [ci skip]. commit 84e69d232b87b9594e545c159444cf1a62f913b7 Author: Alan Garny Date: Sat Feb 27 20:40:35 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903). commit b491a3f450487c50258659b568276ff23aed1e38 Author: Alan Garny Date: Sat Feb 27 20:33:12 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903). commit 210b09ef8065005a88ab39308dc85b84e46f765e Author: Alan Garny Date: Sat Feb 27 20:28:06 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903). commit a09227a86e894c955d985fbecf837f96048133db Author: Alan Garny Date: Sat Feb 27 20:24:56 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903). commit 9a8cccb45fbd5af2d4816b0783bd20c9bfa2bd98 Author: Alan Garny Date: Sat Feb 27 20:04:32 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit a3d3ba4a3a017b9a15089197ea1eb3ef8f899afc Author: Alan Garny Date: Sat Feb 27 19:10:46 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit bae573ec2d20b1cf97c1d1e39a6c1b0bfe6f8458 Author: Alan Garny Date: Sat Feb 27 19:01:21 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit 19aea112e250089314ad98f378a6354385b59a32 Author: Alan Garny Date: Sat Feb 27 17:51:06 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit 5a7007021bd04956d0d1efc31c3c095deff0e4fa Author: Alan Garny Date: Sat Feb 27 16:59:12 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit 73e661304ea5185a5570fb1cf5b27ee5b9efb5b1 Author: Alan Garny Date: Sat Feb 27 16:57:11 2016 +0100 Some work towards having a URL scheme handler for OpenCOR (#903) [ci skip]. commit 0700e6120d2a93b32dcfe3668ac08d2a3dc68aa3 Merge: eed43b841 a11a1077f Author: Alan Garny Date: Sat Feb 27 10:48:13 2016 +0100 Merge branch '\''master'\'' into issue903. commit a11a1077f7f0f703b2bd1983bac9ab0bca6f33b3 Author: Alan Garny Date: Sat Feb 27 02:50:55 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by LLVM'\''s execution engine (#904). Argh, now, it'\''s on OS X that things don'\''t build anymore! commit 09175462f080f63467e8b59adfb7635c382a36d8 Author: Alan Garny Date: Sat Feb 27 00:39:19 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by LLVM'\''s execution engine (#904). Oops, had forgotten to build on Windows and well... it didn'\''t build properly! commit 34901e11e4e40b7ecf139ee49f0302f817be719a Merge: 50529d93a e86548a86 Author: Alan Garny Date: Sat Feb 27 00:38:58 2016 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 50529d93ab931b2e1bd9dba606cb401356be9cea Author: Alan Garny Date: Sat Feb 27 00:07:56 2016 +0100 Some minor cleaning up [ci skip]. commit e86548a86f070a4cc9d85999279ae0f716b0b666 Author: Alan Garny Date: Sat Feb 27 00:07:56 2016 +0100 Some minor cleaning up [ci skip]. commit eed43b841c83aa7b07690f1f961d086932be1249 Merge: a13f483fb dec645268 Author: Alan Garny Date: Fri Feb 26 20:19:15 2016 +0100 Merge branch '\''master'\'' into issue903. commit dec645268025bceb6fe1f9f330b00794116412e0 Merge: 892937079 0ff917a25 Author: Alan Garny Date: Fri Feb 26 20:18:05 2016 +0100 Merge pull request #906 from opencor/issue904 Compiler engine: fixed a problem with OpenCOR crashing on Linux due to an external function not being found by LLVM'\''s execution engine (closes #904). commit 892937079dd3fa215d9156e00723d5886d3b26ee Author: Alan Garny Date: Fri Feb 26 19:51:21 2016 +0100 Some minor cleaning up [ci skip]. commit c8d388471785e87e908a804fdfc5d61ace5447bf Author: Alan Garny Date: Fri Feb 26 19:30:37 2016 +0100 Slight update to the downloads page [ci skip]. commit 0ff917a25d16b3ae9164f54add5f2bdb4171e306 Author: Alan Garny Date: Fri Feb 26 19:18:33 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by LLVM'\''s execution engine (#904). commit bd1b6a6b6e1641d8f55a4780afa83c7615e66b79 Author: Alan Garny Date: Fri Feb 26 19:12:06 2016 +0100 Some minor cleaning up [ci skip]. commit d29bd074cdf8f655581c100c8433b18d3623365c Merge: 6cd3969e3 41a89c688 Author: Alan Garny Date: Fri Feb 26 14:48:57 2016 +0100 Merge pull request #905 from dbrnz/renamebsml BioSignalML: made the code style more in line with the rest of the OpenCOR code (#856) [ci skip]. commit 6cd3969e35c8c63fee6feda48ff54abfb2402f4c Author: Alan Garny Date: Fri Feb 26 14:13:21 2016 +0100 Some minor updates to the developer documentation [ci skip]. commit 532c46edc0ba9d8c5fa5d425fdc4bd1466ae3da8 Author: Alan Garny Date: Fri Feb 26 13:42:57 2016 +0100 Plugin resources: rename them to address a Linux issue [ci skip]. Ideally, we would have our resource files named i18n.qrc.in and ui.qrc for all our plugins, but this is causing problems on Linux with Qt apparently accepting only one file called i18n.qrc.in or ui.qrc. The end result is that, on a development machine, plugin resources (e.g. icons, translations) are not available while, strangely enough, they are on a deployment machine... commit 3a569a316ac80cf04af03d263b93a796ed551163 Author: Alan Garny Date: Fri Feb 26 09:37:54 2016 +0100 Plugin resources: rename them to address a Linux issue [ci skip]. Ideally, we would have our resource files named i18n.qrc.in and ui.qrc for all our plugins, but this is causing problems on Linux with Qt apparently accepting only one file called i18n.qrc.in or ui.qrc. The end result is that, on a development machine, plugin resources (e.g. icons, translations) are not available while, strangely enough, they are on a deployment machine... commit 41a89c688ddf5d633c1808f3126abec220a076d8 Author: David Brooks Date: Fri Feb 26 17:46:18 2016 +1300 Update to `typedobject v1.1.1` and `biosignalml v0.8.1` releases. commit f9eb827ef687d87ca87d9210238ec7d8d9b42460 Author: David Brooks Date: Fri Feb 26 17:44:27 2016 +1300 There'\''s no need to add a "Data" postfix to the BioSignalML file name as the extension signifies the type of file. commit 6ab4d4177522e9d784007e4c4bc8a87e5c08512c Author: David Brooks Date: Fri Feb 26 17:43:00 2016 +1300 Encode all special characters when making a URI for the recording. commit 383c341febc78fc9c4219ae6c7a65d7404fc74c7 Author: David Brooks Date: Fri Feb 26 17:41:40 2016 +1300 `handleAction()` has become `handleUrl()`. commit f76504ef51c0448da9ad55f76b6df1cd75ccae2b Author: David Brooks Date: Fri Feb 26 10:58:58 2016 +1300 Use generic format for resource file. commit 2c6cb30b439d1d7482759b657fe0d75fd2bae431 Merge: 54e760f07 29fec8cc1 Author: David Brooks Date: Fri Feb 26 10:54:46 2016 +1300 Merge branch '\''master'\'' into renamebsml commit 29fec8cc1cdf1deb0963c8017322b4412eba2cda Author: Alan Garny Date: Thu Feb 25 20:12:36 2016 +0100 Some minor cleaning up [ci skip]. commit fdc94b96260fb5e5a342d13dd8b186ac01498296 Author: Alan Garny Date: Thu Feb 25 20:04:21 2016 +0100 Some minor cleaning up [ci skip]. commit 92328217f3de8d0c9990472ce7c448666ced924c Author: Alan Garny Date: Thu Feb 25 19:31:22 2016 +0100 Some minor cleaning up [ci skip]. commit 939fdb60537184377018c02a96e640b310d1807d Author: Alan Garny Date: Thu Feb 25 17:51:53 2016 +0100 Some minor cleaning up [ci skip]. This seems to be the reason why, on Linux, we can’t see some icons (in debug mode only!). commit a94ca3ed42bbe70c0340b722c317e81da5056395 Author: Alan Garny Date: Thu Feb 25 17:30:13 2016 +0100 Some minor cleaning up [ci skip]. commit 4e66c520a97cdfaa72016f440c276eaf5cd01de7 Author: Alan Garny Date: Thu Feb 25 17:25:36 2016 +0100 Some minor cleaning up [ci skip]. commit 7876a88c082024c86c8e1093120d4ce0751e8b40 Author: Alan Garny Date: Thu Feb 25 17:20:12 2016 +0100 Some minor cleaning up [ci skip]. commit 8275c58b577c534a9755b3993c616e61d2eef1ca Author: Alan Garny Date: Thu Feb 25 14:56:28 2016 +0100 Some minor cleaning up [ci skip]. We are only supporting 64-bit systems, so… commit a13f483fb5adc82e38ef89fd6fd87e14c0f420ca Author: Alan Garny Date: Thu Feb 25 10:22:44 2016 +0100 Single Cell view + SED-ML: make it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit 050543683fbddcda401a4e98278407c1f22433bf Author: Alan Garny Date: Thu Feb 25 10:15:27 2016 +0100 Single Cell view + SED-ML: make it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. Also allow editing views that don’t support any MIME type in particular. commit 4e6c8b5be2681b35013d0e583e92b2f5af22b003 Author: Alan Garny Date: Thu Feb 25 10:01:30 2016 +0100 Some work towards having a URL protocol handler for OpenCOR (#903) [ci skip]. commit c396e9bc8f3b0350d5f5b91cf3fae2fc5ac624ff Author: Alan Garny Date: Wed Feb 24 18:07:47 2016 +0100 Some minor cleaning up [ci skip]. commit 72920e90bea129743eb69d16f525bc43db153ab0 Author: Alan Garny Date: Wed Feb 24 18:06:02 2016 +0100 Some minor cleaning up [ci skip]. commit f5ce511f1a19504eca5114c11fa2d6c6288fbb67 Author: Alan Garny Date: Wed Feb 24 18:05:34 2016 +0100 Some minor cleaning up [ci skip]. commit e8c6dbcf68f628b41dbd0989a5fad7b2ce9a5917 Author: Alan Garny Date: Wed Feb 24 18:04:06 2016 +0100 Some minor cleaning up [ci skip]. commit 5df157402162ebd535c6ab705316b78019d1b40a Author: Alan Garny Date: Wed Feb 24 16:43:24 2016 +0100 Some work towards having a URL protocol handler for OpenCOR (#903) [ci skip]. commit d7796b7a6b0183ef995862ad4b29c0f64821cb8d Author: Alan Garny Date: Wed Feb 24 14:44:12 2016 +0100 Some work towards having a URL protocol handler for OpenCOR (#903) [ci skip]. commit e61161f2b239c56897c60f152b2fe70872183326 Author: Alan Garny Date: Tue Feb 23 17:53:59 2016 +0100 Some work towards having a URL protocol handler for OpenCOR (#903) [ci skip]. commit 4698d852c827a367c0439415dffb3da38f6c2069 Author: Alan Garny Date: Tue Feb 23 17:26:55 2016 +0100 Some minor cleaning up [ci skip]. commit e6ecc23768b815aff9a2dffd78295d81b674ab83 Author: Alan Garny Date: Tue Feb 23 14:49:30 2016 +0100 Some minor cleaning up [ci skip]. commit 4f305f21ce733d412ccd59e44010b3dc2d72edfb Author: Alan Garny Date: Tue Feb 23 14:42:23 2016 +0100 Some minor cleaning up [ci skip]. commit 214600b7fe86faead07f3e6a60258dcd3e094c56 Author: Alan Garny Date: Tue Feb 23 14:39:07 2016 +0100 Some minor cleaning up [ci skip]. commit c27e3b925ff278eca2505d72b7d619aade6b1be3 Author: Alan Garny Date: Tue Feb 23 14:30:56 2016 +0100 Some minor cleaning up [ci skip]. commit 0743fb7af54caaf5f340b60011040d9d0747a880 Author: Alan Garny Date: Tue Feb 23 11:11:58 2016 +0100 Slight update to our downloads page [ci skip]. commit e281cbec8fd57d953510e9780f892e25d9fff6c5 Author: Alan Garny Date: Tue Feb 23 11:00:58 2016 +0100 Some work on refactoring the handling of OpenCOR actions (#901) [ci skip]. commit de29da98697d1269020000214cf3a2dae253660a Author: Alan Garny Date: Tue Feb 23 10:55:43 2016 +0100 Slight updates to our downloads pages [ci skip]. commit 345b94788ffc12847d590e8ba330bd78438f6cae Author: Alan Garny Date: Tue Feb 23 10:53:00 2016 +0100 jQuery: upgraded to version 2.2.1 (closes #902). commit 82536caa5c8df9034acbe569596971828ca7c2de Author: Alan Garny Date: Tue Feb 23 10:44:39 2016 +0100 Some work on refactoring the handling of OpenCOR actions (#901) [ci skip]. commit 1318ce640ab34b017fe38a4962a8fb5c666e2238 Author: Alan Garny Date: Tue Feb 23 10:44:20 2016 +0100 Some work on refactoring the handling of OpenCOR actions (#901) [ci skip]. commit 17b24391673ad5f0d503c88ba4ab87606523b7a2 Author: Alan Garny Date: Tue Feb 23 10:44:00 2016 +0100 Some work on refactoring the handling of OpenCOR actions (#901) [ci skip]. commit e1565fd98be7fc86a64850cf002e777efd5391d1 Author: Alan Garny Date: Tue Feb 23 10:31:17 2016 +0100 Some minor cleaning up [ci skip]. commit aa190af90ccad9bfed00ee5d112e2f4c0d22b103 Author: Alan Garny Date: Tue Feb 23 09:58:02 2016 +0100 Some minor cleaning up [ci skip]. commit 04abd19bccbf92d162b1a2ca1d9e4c8dfebd4ea6 Author: Alan Garny Date: Tue Feb 23 09:55:44 2016 +0100 Some minor cleaning up [ci skip]. commit 15762ba1031f8419f8bcc064e91b75acaf607e38 Author: Alan Garny Date: Mon Feb 22 18:31:15 2016 +0100 New snapshots. commit a6a3ce3b28af6ae4777f2de9309a72ca91619242 Merge: 5c1c082bb 04230b9d3 Author: Alan Garny Date: Mon Feb 22 18:28:55 2016 +0100 Merge pull request #900 from opencor/issue895 Single Cell view + SED-ML: can now open a CellML file referenced in a SED-ML file or a COMBINE archive (closes #895). commit 5c1c082bb78755b4b2b65ddbccfd92be4cb5bb34 Author: Alan Garny Date: Mon Feb 22 18:19:19 2016 +0100 Slight update to our downloads page [ci skip]. commit 04230b9d308b52462374fa9e99a264b75a9341a4 Author: Alan Garny Date: Mon Feb 22 18:05:33 2016 +0100 Single Cell view + SED-ML: can now open a CellML file referenced in a SED-ML file (#895). commit 539d4e674ded0fedbd44ed0db0da07687f3c6957 Author: Alan Garny Date: Mon Feb 22 17:26:32 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit 173e669f5fe344f662a5cafa1186cb5801a91e3b Author: Alan Garny Date: Mon Feb 22 17:26:09 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit 80896378c3cc7becab3cfdfcd8bbb905574f02de Author: Alan Garny Date: Mon Feb 22 17:16:47 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit e1fea8589fbfc7ea76bbcbf90b60d8616d142e21 Author: Alan Garny Date: Mon Feb 22 16:58:02 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit a6417f8286888aba5521bf731d48a59138b56a24 Author: Alan Garny Date: Mon Feb 22 16:29:12 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file (#895) [ci skip]. commit 8b6f7c0606eb929969745801278fa14dc8ed672c Merge: a984620b1 17c39c1b4 Author: Alan Garny Date: Mon Feb 22 16:25:54 2016 +0100 Merge pull request #899 from opencor/issue893 Remote files: now handle 3xx redirection headers (closes #893). commit a984620b18e7ded6b7a71a2863c4b46c05ed655c Author: Alan Garny Date: Mon Feb 22 15:54:33 2016 +0100 Slight update to our downloads page [ci skip]. commit 17c39c1b4a234a8bf36dcb06a40fd1ac61058d2f Author: Alan Garny Date: Mon Feb 22 15:49:05 2016 +0100 Remote files: now handle 3xx redirection headers (#893). commit 12f015de0882999d0a46210c442d2bcbb1ff82e9 Merge: 483a37015 9118639be Author: Alan Garny Date: Mon Feb 22 15:34:36 2016 +0100 Merge pull request #898 from opencor/issue894 Single Cell view + SED-ML: to open a remote SED-ML file doesn'\''t work with relatively specified sources (closes #894). commit 483a37015d220456cf081a642bf20564ccf1923d Author: Alan Garny Date: Mon Feb 22 15:03:12 2016 +0100 Slight update to our downloads page [ci skip]. commit 9118639be903e2286e8866ef7db7ae564513747f Author: Alan Garny Date: Mon Feb 22 14:59:53 2016 +0100 Single Cell view + SED-ML: fixed a problem with opening a remote SED-ML file not working with relatively specified sources (#894). commit bb2f4d8437f149fa9b3c7f11301329f9d6db5666 Author: Alan Garny Date: Mon Feb 22 14:59:32 2016 +0100 Some minor cleaning up [ci skip]. commit ed82ec52556136dd017f77c936efbe6b8a20023f Author: Alan Garny Date: Mon Feb 22 14:52:07 2016 +0100 Some minor cleaning up [ci skip]. commit b4c0dcb912b5d4496a0b46ff2e89a69ab2a20843 Author: Alan Garny Date: Mon Feb 22 14:36:00 2016 +0100 Some minor cleaning up [ci skip]. commit 37eedffe9d9b5c8557bd79d03ec8b8c98a9c0326 Merge: c5b57974a 31afec03a Author: Alan Garny Date: Mon Feb 22 14:35:04 2016 +0100 Merge pull request #897 from opencor/issue896 Single Cell view + SED-ML: the URL of a model is wrongly formatted on Windows (closes #896). commit c5b57974a249e45280b430fd1617d73fe833991c Author: Alan Garny Date: Mon Feb 22 14:01:08 2016 +0100 Slight updates to our downloads pages [ci skip]. commit 31afec03afb006712a0abab3d50cf10630c778cc Author: Alan Garny Date: Mon Feb 22 13:52:18 2016 +0100 Single Cell view + SED-ML: fixed a problem with the URL of a model being wrongly formatted on Windows (#896). commit 370b0dd0d7784df9f7e2798fcc644b9f169a30bd Author: Alan Garny Date: Fri Feb 19 17:47:42 2016 +0100 Argh, had forgotten to export the CombineArchiveFile class [ci skip]. commit c325e25d4bc324d66be24a81e915d2e8a5ce2bdc Author: Alan Garny Date: Fri Feb 19 17:31:33 2016 +0100 New snapshots. commit 23f770faf2b9ac1f5628a0bb197702e4cf9fa244 Author: Alan Garny Date: Fri Feb 19 17:31:08 2016 +0100 Some minor updates to the user documentation [ci skip]. commit de94374bf1a0988e0859e24c9184f9a894accd5c Author: Alan Garny Date: Fri Feb 19 17:22:03 2016 +0100 Slight updates to the downloads page [ci skip]. commit 4aee0e5846d90858ab8fde2234963db441f6f86f Merge: 5b0db74a1 c21bd1ef0 Author: Alan Garny Date: Fri Feb 19 17:21:17 2016 +0100 Merge pull request #892 from opencor/issue825 Single Cell view + SED-ML: import a basic simulation from SED-ML (closes #825). commit c21bd1ef08a6e8fcf5bf5fbf7fedf2788d05c44f Author: Alan Garny Date: Fri Feb 19 16:45:59 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit e02686d72b1392882dcc60cfc36bc172c9cedb79 Author: Alan Garny Date: Fri Feb 19 16:14:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit aa06783983371f5d8622e21df42e4fe7db65e1ee Author: Alan Garny Date: Fri Feb 19 16:11:22 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b62b22f139f1dc44edb27ebaf4d586a9ddad3473 Author: Alan Garny Date: Fri Feb 19 15:47:44 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 20a5b680161cd2f9be2ecc45f35f01814eaf2d26 Author: Alan Garny Date: Fri Feb 19 14:51:47 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit baadb5e151ad6f43c6e4136c3905ffc90381e19f Author: Alan Garny Date: Fri Feb 19 14:49:07 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit d2ab7ca9c76c3906605b8759b43a1617efd1b0af Author: Alan Garny Date: Fri Feb 19 14:10:57 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b5d910a2bdd7296a52bdb91416fe2d77e855a8da Author: Alan Garny Date: Fri Feb 19 13:59:10 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 1583e015923490e67d517da833f5d85a184ee81d Author: Alan Garny Date: Fri Feb 19 13:53:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit dc98af9aa17f74b62fb3df2a0ea84bd1cde37641 Author: Alan Garny Date: Fri Feb 19 13:29:05 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2dfcbe8363a9a5622daf4b82aef7020cb4035024 Author: Alan Garny Date: Fri Feb 19 13:08:20 2016 +0100 Some minor cleaning up [ci skip]. commit 1258a93711d975fa80165b1a4138931323ff9016 Author: Alan Garny Date: Fri Feb 19 13:04:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit fab6f9d7d1f618e1e1736f7ab1a9b7f37d0cb05f Author: Alan Garny Date: Fri Feb 19 11:54:36 2016 +0100 Single Cell view + SED-ML: fixed a small problem with the creation of variable targets [ci skip]. commit 4eef3b6e722ff5425d162f70e8ec12080dbf4f3b Author: Alan Garny Date: Fri Feb 19 11:53:56 2016 +0100 Some minor cleaning up [ci skip]. commit 5db426d1165a6f313588c59fe5c595747159bda6 Author: Alan Garny Date: Fri Feb 19 11:53:31 2016 +0100 Some minor cleaning up [ci skip]. commit 35f50b4d436cbdfd784973dc0a9978ff7337d1ae Author: Alan Garny Date: Fri Feb 19 10:37:54 2016 +0100 Single Cell view: revisiting the loading/saving of some settings [ci skip]. The settings in question are the collapsed state of our collapsible widget, and the columns’ width of our property editors. commit 121eaf654f0de57efea1557e2723614624d7bc76 Author: Alan Garny Date: Fri Feb 19 10:04:13 2016 +0100 Some minor cleaning up [ci skip]. commit 6bbe034959ddd7479f2a5e70ab58e9039463d8dd Author: Alan Garny Date: Thu Feb 18 19:28:05 2016 +0100 Single Cell view: revisiting the loading/saving of some settings [ci skip]. The settings in question are the collapsed state of our collapsible widget, and the columns’ width of our property editors. commit 8099909cc073fdc5927db0c4d494b5386f8dcf78 Author: Alan Garny Date: Thu Feb 18 18:46:24 2016 +0100 Some minor cleaning up [ci skip]. commit 15bfdb7fe24c5f5f247d6ffcd61306dfad77e3af Author: Alan Garny Date: Thu Feb 18 18:24:04 2016 +0100 Single Cell view: revisiting the loading/saving of some settings [ci skip]. The settings in question are the collapsed state of our collapsible widget, and the columns’ width of our property editors. commit b44dba6d8f9d4c848b0fff2558ef8f041c16cad6 Author: Alan Garny Date: Thu Feb 18 17:11:18 2016 +0100 Single Cell view: revisiting the loading/saving of some settings [ci skip]. The settings in question are the collapsed state of our collapsible widget, and the columns’ width of our property editors. commit 2b727d8875f983b13287870602dd0eaaf6c78480 Author: Alan Garny Date: Thu Feb 18 16:41:00 2016 +0100 Single Cell view: revisiting the loading/saving of some settings [ci skip]. The settings in question are the collapsed state of our collapsible widget, and the columns’ width of our property editors. commit f1ca40b6d4f62dc636ffeae02b1d1e1ec107d937 Author: Alan Garny Date: Thu Feb 18 16:35:44 2016 +0100 Some minor cleaning up [ci skip]. commit 6e58ad81828e1346e11dc1671c2ffdb0d7c4c6a3 Author: Alan Garny Date: Thu Feb 18 16:30:43 2016 +0100 Some minor cleaning up [ci skip]. commit e6c79cca516e3bbd60cb6e41c71512ff47afa521 Author: Alan Garny Date: Thu Feb 18 10:47:13 2016 +0100 Some minor cleaning up [ci skip]. Removed some classes/functions that are not used by PropertyEditorWidget anymore. commit f3c1710d042877375f91e58f72b27a391fa285e3 Author: Alan Garny Date: Wed Feb 17 18:32:42 2016 +0100 Single Cell view: can now duplicate a CellML file, SED-ML file and COMBINE archive, and save it [ci skip]. commit 04e965c9140697a93091b1fe8ab70114ebf06205 Author: Alan Garny Date: Wed Feb 17 18:30:16 2016 +0100 Standard file manager: revised StandardFileManager::isFile() so that it doesn'\''t consider new files being necessarily of the right type (useful when duplicating a file) [ci skip]. Related to issue #891. commit 12810ed745ef97bbacc8d8fffeae29bd082163f0 Author: Alan Garny Date: Wed Feb 17 17:49:50 2016 +0100 Some minor cleaning up [ci skip]. commit 1c9b1160354deba3a1d76eb28a3f260e1779168f Author: Alan Garny Date: Wed Feb 17 17:26:05 2016 +0100 Some minor cleaning up [ci skip]. commit 53a96e818eee209df06532d3d36269787bf395af Author: Alan Garny Date: Wed Feb 17 17:02:42 2016 +0100 Some minor cleaning up [ci skip]. commit 8343f049d1a8a2d3b47d1de6be5000e284fa9bae Author: Alan Garny Date: Wed Feb 17 16:19:55 2016 +0100 Some minor cleaning up [ci skip]. commit 095bad5e5d54be28cc5d5ec0fa62d4247885a5b3 Author: Alan Garny Date: Wed Feb 17 16:00:09 2016 +0100 Some minor cleaning up [ci skip]. commit 237726e643c31184947833738911b115e75c0135 Author: Alan Garny Date: Wed Feb 17 15:58:24 2016 +0100 Some minor cleaning up [ci skip]. commit 0a3892c9db2a012b84dc9185c4f02aba0ee1e444 Author: Alan Garny Date: Wed Feb 17 15:43:04 2016 +0100 Some minor cleaning up [ci skip]. commit e109b319ca034ce73c1c37a1591c1b5ea345f9c9 Author: Alan Garny Date: Wed Feb 17 15:25:57 2016 +0100 Some minor cleaning up [ci skip]. commit 3e9154103fa15953466c4e7bb8263247d617d02a Author: Alan Garny Date: Wed Feb 17 14:52:23 2016 +0100 Some minor cleaning up [ci skip]. commit ee0036d2b4eeb60e4478605c40b6e72db954764f Author: Alan Garny Date: Wed Feb 17 14:46:38 2016 +0100 Some minor cleaning up [ci skip]. commit 21f8c454c4c762e556051640830261b6716d636f Author: Alan Garny Date: Wed Feb 17 14:45:36 2016 +0100 Some minor cleaning up [ci skip]. commit 052aa186600c9d4daf14347190fa6fe00d019442 Author: Alan Garny Date: Wed Feb 17 14:33:10 2016 +0100 Some minor cleaning up [ci skip]. commit e17719ac5436a49bca96e841ae6a04647ce512cd Author: Alan Garny Date: Wed Feb 17 14:31:01 2016 +0100 Some minor cleaning up [ci skip]. commit 4b752f2c0f0813382e70f76c40752ac2fbf7201b Author: Alan Garny Date: Wed Feb 17 14:27:02 2016 +0100 Some minor cleaning up [ci skip]. commit e26609763783766db00d9087ab11efed37d6225f Author: Alan Garny Date: Wed Feb 17 14:21:50 2016 +0100 Some minor cleaning up [ci skip]. commit a2b4fd2177246bfc67bc2e538b24c7585fa7339d Author: Alan Garny Date: Wed Feb 17 14:16:12 2016 +0100 Some minor cleaning up [ci skip]. commit 3393fa3688349049f074db6fe6109b2a8bc1c2c3 Author: Alan Garny Date: Wed Feb 17 11:32:29 2016 +0100 Some minor cleaning up [ci skip]. commit 5e9fd6618f9e2524f459d2861456208a12a88693 Author: Alan Garny Date: Wed Feb 17 11:11:31 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 1fb253ffb0392d37c35966a34634e3225a2e8ede Author: Alan Garny Date: Wed Feb 17 10:57:36 2016 +0100 Standard file manager: revised StandardFileManager::isFile() so that it doesn'\''t consider new files being necessarily of the right type (useful when duplicating a file) [ci skip]. Related to issue #891. commit f92e21f979aab64df21047fa414031ff9627af70 Author: Alan Garny Date: Wed Feb 17 10:55:47 2016 +0100 Single Cell view: make it accept the SED-ML and COMBINE MIME types [ci skip]. Somewhat related to issue #891. commit f94555468760f5243c4ba46910bac81df606d158 Author: Alan Garny Date: Wed Feb 17 10:54:42 2016 +0100 Fixed a regression issue with regards to retrieving the filters to use to open/save a file [ci skip]. commit 6ba00ceb49d591915ec66691791d5033e4bfff7c Author: Alan Garny Date: Wed Feb 17 10:53:16 2016 +0100 Some minor cleaning up [ci skip]. commit 9fcb752a2741dbb2a0cfe5ad74a716b026b021a3 Author: Alan Garny Date: Wed Feb 17 10:24:32 2016 +0100 Some minor cleaning up [ci skip]. commit 8121f796127452d56bec3bcbb145ce84cf169301 Author: Alan Garny Date: Tue Feb 16 19:43:36 2016 +0100 Some minor cleaning up [ci skip]. commit fe897f2c2e55269cfedcdb26834460a8a74aaeed Author: Alan Garny Date: Tue Feb 16 18:43:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit acb582285dbb82c0fd439c51e3d804857921c1e2 Author: Alan Garny Date: Tue Feb 16 17:57:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 3a6cc32488f6c3f9cd5e53426893cf1ed9962a7c Author: Alan Garny Date: Tue Feb 16 17:39:49 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit dd5cec157be1ce0f9ac2f284b4926b0da35532f8 Author: Alan Garny Date: Tue Feb 16 15:29:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 88894d00f72db555115de1a9b0519d3845988881 Author: Alan Garny Date: Tue Feb 16 15:22:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 9aac99c274a9b739acf9715250dc754d86ba2080 Author: Alan Garny Date: Tue Feb 16 14:14:57 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2a7290a0d68cb00739f19659124c2228d4ba4fd0 Author: Alan Garny Date: Tue Feb 16 11:40:42 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 8d9aa6d88068144960bb29a85c1567a53de50df3 Author: Alan Garny Date: Tue Feb 16 11:35:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b46c2ae96c138b1b0ac47cd023319673f051acf1 Author: Alan Garny Date: Tue Feb 16 10:41:56 2016 +0100 Some minor cleaning up [ci skip]. commit e7b03d2058364f3ba17cfd8b867534f8041415b1 Author: Alan Garny Date: Mon Feb 15 17:51:38 2016 +0100 Some minor cleaning up [ci skip]. commit 8611a321f0f097a6a60f77283d43816895c11cdd Author: Alan Garny Date: Mon Feb 15 17:34:12 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 11a3358687fbce51a11bc18d0c5e3cb4334c9759 Author: Alan Garny Date: Mon Feb 15 16:37:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit f8b9ff802d175b62aa226614d8387896de23d3cb Author: Alan Garny Date: Mon Feb 15 15:43:56 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit bf48476b18eeb512a2191f2c6999c6f103628ac9 Author: Alan Garny Date: Mon Feb 15 13:50:56 2016 +0100 Some minor cleaning up [ci skip]. commit 282baa062cf8f255d05f30278293f946fd3ff546 Author: Alan Garny Date: Mon Feb 15 13:31:10 2016 +0100 Some minor cleaning up [ci skip]. commit 4f78c5588b4c0ee891164f4a9da2fcc87d4bd351 Merge: d1b65e983 5b0db74a1 Author: Alan Garny Date: Fri Feb 12 20:28:56 2016 +0100 Merge branch '\''master'\'' into issue825. commit 5b0db74a1b85183cf7322b810ab9776ae34dee17 Author: Alan Garny Date: Fri Feb 12 20:17:16 2016 +0100 Fixed a couple of issues with the downloads pages [ci skip]. commit c3b06fea8592e80a4c3e35d48d7de5399e886423 Author: Alan Garny Date: Fri Feb 12 20:02:51 2016 +0100 All of OpenCOR now gets disabled when the central widget'\''s busy widget is showing (closes #890). commit d1b65e9838a2d71632e3b9367b003f7bfd8c13bc Author: Alan Garny Date: Fri Feb 12 18:06:18 2016 +0100 Some minor cleaning up [ci skip]. commit 8548f3f6a91817338716cf99c58a762250062a3a Author: Alan Garny Date: Fri Feb 12 18:00:47 2016 +0100 Single Cell view: fixed a small problem with the listing of models for a graph [ci skip]. It was fine except for remote files, for which we were using the local file information rather than the remote one! commit d6b3393dfac9177abf6bd88840dd824a2886109d Author: Alan Garny Date: Fri Feb 12 17:59:14 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 90c985bf8104109358806bc252e7f002df3da4a3 Author: Alan Garny Date: Fri Feb 12 17:41:48 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 93414dc6d62090b2c74b59e89078bcfd66634bea Author: Alan Garny Date: Fri Feb 12 17:25:04 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 49dc8e495e7686d132420e261cf92402e8bfe14e Author: Alan Garny Date: Fri Feb 12 16:54:20 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 58ea724a9b098bdb29908b6f8ee429d096d1ae5f Author: Alan Garny Date: Fri Feb 12 16:47:55 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 47943e600c78669fdd6fe2b09f220f5dae02b18f Author: Alan Garny Date: Fri Feb 12 15:23:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b7e53d8b27dff36df649a1f2556b5a63dc43cd77 Author: Alan Garny Date: Fri Feb 12 15:17:20 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 73a3bd48093a0e7f00b64e17e62530841339ef09 Author: Alan Garny Date: Fri Feb 12 14:42:35 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit d25c8d51c58d87d7145c59406995b5d77b14ae66 Author: Alan Garny Date: Fri Feb 12 13:48:43 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 35090878c7acd3bd30b7fa572422f8b50649b254 Author: Alan Garny Date: Fri Feb 12 13:44:52 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit c1db837235eabfa9fd0f63147866e5abfd39df95 Author: Alan Garny Date: Fri Feb 12 13:23:01 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 60b91a0d7b91b2ea8693c98ab96d41abbd8f0c6e Author: Alan Garny Date: Fri Feb 12 11:09:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 9749f959abe9ddd6fcc0061347826c0b04b049ae Author: Alan Garny Date: Fri Feb 12 11:09:04 2016 +0100 Some minor cleaning up [ci skip]. commit 294a2fbbb159517ec6693ee95737fafb286609d2 Author: Alan Garny Date: Fri Feb 12 10:25:22 2016 +0100 Some minor cleaning up [ci skip]. commit cfd30aa5ff84aac6abe9d6c9011c8d9d5a7d8dea Author: Alan Garny Date: Thu Feb 11 18:58:41 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b7df1113574e94a940a0e2d357a759ce59cad91c Author: Alan Garny Date: Thu Feb 11 18:12:30 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit ae6b0a236ca7c143ddd510ed1dc63210401f12a9 Author: Alan Garny Date: Thu Feb 11 15:57:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 9bd188db709aec2cacc335a15ef5a59e00951bff Author: Alan Garny Date: Thu Feb 11 15:37:39 2016 +0100 Oops, slight oversight when it comes to our solution to issue #888 [ci skip]. Our warning message was always shown even when there was no reported issue! commit affdbe7949a82b76931c43d341487b3191b973f0 Author: Alan Garny Date: Thu Feb 11 15:30:20 2016 +0100 Some minor cleaning up [ci skip]. commit d9d6ef9696e51b66148efb4c314fca550c4663d5 Merge: e69d01c17 41fe86e4c Author: Alan Garny Date: Thu Feb 11 15:08:31 2016 +0100 Merge branch '\''master'\'' into issue825. commit 41fe86e4c00b8ccc5d7815c03cd3366f28217c7d Merge: 397da4358 55da5ee36 Author: Alan Garny Date: Thu Feb 11 15:07:40 2016 +0100 Merge pull request #889 from opencor/issue888 CellML 1.1 validation: now warn the user that an issue may be related to an (in)directly imported CellML file (closes #888). commit 55da5ee36ccb979b91965cdc2e413a593230db98 Author: Alan Garny Date: Thu Feb 11 14:38:28 2016 +0100 CellML 1.1 validation: now warn the user that an issue may be related to an (in)directly imported CellML file (#888). commit e69d01c17dacb59fcbf8b41f8313c4eb0d9750d1 Author: Alan Garny Date: Thu Feb 11 13:33:49 2016 +0100 Some minor cleaning up [ci skip]. commit 26b04a39e0f65224030837e6cfc0c4c446cd2e14 Author: Alan Garny Date: Thu Feb 11 13:24:15 2016 +0100 Some minor cleaning up [ci skip]. commit a190af9d9822a231b59803958ce31431ee745207 Author: Alan Garny Date: Wed Feb 10 18:02:11 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 871742442250cbf25af779e07b27a274bd7a1c99 Author: Alan Garny Date: Wed Feb 10 17:52:59 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit e911a762341bb1129d867872d4d546a5ca50a2c1 Author: Alan Garny Date: Wed Feb 10 17:50:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 5dbe5aeb527c461b7a7e51a25dd8bc48c10dcca2 Author: Alan Garny Date: Wed Feb 10 17:32:40 2016 +0100 Show our busy widget when reloading an indirect remote file [ci skip]. commit 9540c44c2ad1fcc13cfd3ace2633755a79f5e194 Author: Alan Garny Date: Wed Feb 10 17:15:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 431e361f4883035dccfa98a436ce54bf0fb4e0a7 Author: Alan Garny Date: Wed Feb 10 16:24:47 2016 +0100 Show our busy widget when reloading a remote file [ci skip]. commit 3eaea771e702a648bff4dd424af9e044f5fb755a Author: Alan Garny Date: Wed Feb 10 16:18:24 2016 +0100 Show our busy widget when reloading a remote file [ci skip]. commit 0b8290559e5b0d7334e2972a4cb6ed6f630f6e31 Author: Alan Garny Date: Wed Feb 10 15:59:06 2016 +0100 Show our busy widget when reloading a remote file [ci skip]. commit 2ac592f3f366427de35462bdec1c8ff3c30e6b65 Author: Alan Garny Date: Wed Feb 10 15:07:30 2016 +0100 Some minor cleaning up [ci skip]. commit 9a624a512f7165c5e22741109e895dd196699a4c Author: Alan Garny Date: Wed Feb 10 14:50:53 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit e5fe1d3a551e906a0525d30062c8356fa602e4ab Author: Alan Garny Date: Wed Feb 10 14:26:24 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 1f89d22cca5aebbb624dfd18aef6655f9fa02713 Author: Alan Garny Date: Wed Feb 10 14:11:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 3f1c7a9b1249c608829836c4b3120c97fd0ffdd0 Author: Alan Garny Date: Wed Feb 10 13:50:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2f5ecb625f439a5412d2c7ecf8afc1f1b29caa10 Author: Alan Garny Date: Tue Feb 9 18:38:31 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 51674c65ae39317e015b0f0cb443f33619f80b2a Author: Alan Garny Date: Tue Feb 9 18:02:26 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 7ba8079af1f3aa3c0cf57c4f6abc7395d5fbef8c Author: Alan Garny Date: Tue Feb 9 17:54:11 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit 20dfbc005242a3c17a9c60801cbe3fa29cc068ac Author: Alan Garny Date: Tue Feb 9 17:04:47 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit 142aa68d9893132bcc3d4f681e6ba8880d429d8b Author: Alan Garny Date: Tue Feb 9 15:09:24 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit 98ec1c23974e5604fecb0dbbb7b7cdfec6449575 Author: Alan Garny Date: Tue Feb 9 13:28:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 567efc4400d8cbd9722c72b9f2b1ad03a9365b40 Author: Alan Garny Date: Tue Feb 9 11:03:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 17aa7935926789add015e27023f5de1d26275428 Author: Alan Garny Date: Tue Feb 9 10:31:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 416b797830e1788e7f6d541f2216c96ecd841cc1 Author: Alan Garny Date: Tue Feb 9 10:13:43 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit de0a7285a7188a1b5ec9f543791be1204a7f5e75 Author: Alan Garny Date: Mon Feb 8 19:52:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 08a490a051ade8ac79d5065c2f5f6473ac3598bf Author: Alan Garny Date: Mon Feb 8 19:15:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 50a0b613f88d5ea925b12366976bd7b5ec5c4075 Author: Alan Garny Date: Mon Feb 8 18:35:23 2016 +0100 Some minor cleaning up [ci skip]. commit 3807ab2329dd960f5ac7d2a56fc3221cf99e4e6b Author: Alan Garny Date: Mon Feb 8 18:26:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b16266e7cf3bf298d49204976226d161cee10837 Author: Alan Garny Date: Mon Feb 8 17:08:19 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2866eea5ef6dc9fb99879b20da917c0e0b20523a Author: Alan Garny Date: Mon Feb 8 16:50:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit bd7020003e96bfbbbc1956f6e56512168e6fbb7b Author: Alan Garny Date: Mon Feb 8 16:50:41 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit a4ca6be0378d808b689670d611001ec11f8a3c67 Author: Alan Garny Date: Mon Feb 8 16:12:52 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2fa55645e4f47dea9b4beafc2575b25acfb35e30 Author: Alan Garny Date: Mon Feb 8 16:00:19 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 06ff6c24ca8d84ae92044f40f7445e76c5ac936c Author: Alan Garny Date: Mon Feb 8 15:04:28 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 512ce3edd23c9ef35f9571079aa9e604e505a4de Author: Alan Garny Date: Mon Feb 8 14:42:26 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit c144445ebfe15e7744276c39210edcb295056cd2 Author: Alan Garny Date: Mon Feb 8 14:42:13 2016 +0100 Some minor cleaning up [ci skip]. commit 8bb87cb8d37ff28dca4cf19bef1d8a300adb7e52 Author: Alan Garny Date: Mon Feb 8 10:33:02 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 397da43582eb1c5bf26e38ccddc30f9c9aac6a5b Author: Alan Garny Date: Sun Feb 7 11:28:33 2016 +0100 Slight updates to the user and downloads pages [ci skip]. commit bbd8894190c5901b297280a5609af4026acea2cb Merge: 1dd30d423 0494788f7 Author: Alan Garny Date: Sun Feb 7 11:20:31 2016 +0100 Merge branch '\''master'\'' into issue825. commit 0494788f7c5d93b60f435ba0830699c1f8a1be52 Merge: d38ed375f 76b89394d Author: Alan Garny Date: Sun Feb 7 11:14:40 2016 +0100 Merge pull request #886 from opencor/issue885 Raw view: renamed it to Raw Text view (closes #885). commit 76b89394da4a34652d9ab10472a66ae003c721de Author: Alan Garny Date: Sun Feb 7 10:33:51 2016 +0100 Raw view: some work on renaming it to Raw Text view (#885). commit 03270a3dce0049ec95ebe1ddf3cd675f3913e7e8 Author: Alan Garny Date: Sun Feb 7 10:33:13 2016 +0100 Raw view: some work on renaming it to Raw Text view (#885). commit 15a16d2a6266100fbc1d5d6ce7e14c0d14981cc2 Author: Alan Garny Date: Sun Feb 7 09:56:11 2016 +0100 Raw view: some work on renaming it to Raw Text view (#885) [ci skip]. commit d38ed375f317b1ea739de77112d0646b13a0ef91 Author: Alan Garny Date: Sat Feb 6 00:35:54 2016 +0100 Slight updates to the user and downloads pages [ci skip]. commit 5ff1607ca5087d764a07cfd9b5abfbe0602724f3 Author: Alan Garny Date: Sat Feb 6 00:30:46 2016 +0100 Raw view: only allow text files (closes #884). commit d6873d134d9a7ebe9647af96cabaa476279cc78f Author: Alan Garny Date: Sat Feb 6 00:14:32 2016 +0100 Some minor cleaning up [ci skip]. commit 887fde18b63047af555b1655c1b4b95c7eac1597 Author: Alan Garny Date: Sat Feb 6 00:08:12 2016 +0100 Some minor cleaning up [ci skip]. commit 1dd30d4238843139ee8c382342805a4a34d6ae3e Merge: 11bea6eeb b917e2e9b Author: Alan Garny Date: Fri Feb 5 22:09:01 2016 +0100 Merge branch '\''master'\'' into issue825. commit b917e2e9b8de31c6168fb47de1a77e49913bdf79 Merge: 50123d759 a6b178480 Author: Alan Garny Date: Fri Feb 5 22:06:48 2016 +0100 Merge pull request #883 from opencor/issue882 Fixed a problem with detecting file changes not working with non-text files (closes #882). commit a6b178480ba8419c51c8a3b27918ced8a0c5cd4e Author: Alan Garny Date: Fri Feb 5 21:20:53 2016 +0100 Fixed a problem with detecting file changes not working with non-text files (#882). commit 11bea6eeba4f407dad72db5ad5a86abc63523d91 Author: Alan Garny Date: Fri Feb 5 20:11:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 7391b0af1d8a386b1622a0f1dffa19b1b1acda6a Author: Alan Garny Date: Fri Feb 5 16:22:18 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 78b5a5bb6a72e9ce9e35d2039b9b20d3ba4926f1 Author: Alan Garny Date: Fri Feb 5 16:21:01 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 04d2408a1de4e112577b756e06122efe4e044bce Author: Alan Garny Date: Fri Feb 5 15:26:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 49b494356064d8a5a49b2a1cc4a0ba069259ffb0 Author: Alan Garny Date: Fri Feb 5 15:24:03 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 028598eff4a48c3a7d416d9d277af191afcdd5a8 Author: Alan Garny Date: Fri Feb 5 14:58:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 8a1da13bbf08ff617b84af2b235c73bdb1cd9625 Author: Alan Garny Date: Fri Feb 5 14:31:07 2016 +0100 Kind of reverting commit 59f3ce3 (related to issue #868) [ci skip]. Not only is it not needed anymore because of SingleCellViewGraphPanelPlotWidget::axesChanged() and SingleCellViewGraphPanelPlotWidget::resetAxesChanged() now being available, but our ‘fix’ resulted in the loop always starting at 0 (!!), meaning that we were always testing all of the data rather than just the new one! In other words, the longer the simulation the more rugged the rendering. commit 93001bcada3192c33bf6a3562a4c89bd2bb1f272 Author: Alan Garny Date: Fri Feb 5 13:39:31 2016 +0100 Single Cell view: fixed a small problem following our work on issue #590 [ci skip]. commit f8fb16b4f5c481463c804ac0fe28beb8f7d23f2a Author: Alan Garny Date: Fri Feb 5 11:05:16 2016 +0100 Single Cell view: fixed a small problem following our work on issue #590 [ci skip]. commit edacae2f3ce4cfb8ba882e92d6ed0ffeee9c1ed7 Author: Alan Garny Date: Thu Feb 4 19:28:49 2016 +0100 Single Cell view: fixed a small problem following our work on issue #590 [ci skip]. Say you have two CellML files A and B. In A, you set the delay as high as possible. In B, create a graph to plot something from A. Run A and switch straight to B. You will see that the plot for A to update in B, but the graph panel won'\''t resize when necessary... commit ed0eec6945575bfc814b48ff73cbf76a2633a1b7 Author: Alan Garny Date: Thu Feb 4 18:00:39 2016 +0100 Some minor cleaning up [ci skip]. commit a24cfe3a51327af3029bb8929b2418deed989e98 Author: Alan Garny Date: Thu Feb 4 17:12:21 2016 +0100 Some minor cleaning up [ci skip]. SingleCellViewInformationGraphsWidget: that business of checking whether we can emit the graphsUpdated() signal makes things unnecessarily complicated while, hopefully, it doesn’t bring much benefit, so removed it… commit ba6eab2ce1eab2741142375f9523b55c2624b52c Author: Alan Garny Date: Thu Feb 4 16:35:35 2016 +0100 Some minor cleaning up [ci skip]. commit 078e8c249af340c7a190b2c5e464193130609729 Author: Alan Garny Date: Thu Feb 4 16:03:47 2016 +0100 Some minor cleaning up [ci skip]. commit 68195577c0bbcf5da4e5c74e3b85a3e77bebe813 Author: Alan Garny Date: Thu Feb 4 16:00:53 2016 +0100 Some minor cleaning up [ci skip]. commit e8760b12dc52e86a8993cbe3cc9e8ee65d7b54cb Author: Alan Garny Date: Thu Feb 4 15:42:22 2016 +0100 Single Cell view: fixed a small problem with renaming a file [ci skip]. commit 5c0b27340433affb11c903c2a282046d27ae2cd6 Author: Alan Garny Date: Thu Feb 4 14:32:39 2016 +0100 Some minor cleaning up [ci skip]. commit 61550c7161e5121742133da34336817effdadf1d Author: Alan Garny Date: Thu Feb 4 14:15:22 2016 +0100 Some minor cleaning up [ci skip]. Single Cell view: removed an unnecessary argument from fileXXX() methods. commit 8b18309bb8a24f6e5cc08920a0e381f24e60c1b7 Author: Alan Garny Date: Thu Feb 4 13:29:02 2016 +0100 Some minor cleaning up [ci skip]. Indeed, once a file has a view, it will keep having a view after being reloaded, even if it’s not of the right type anymore (see StandardFileManager::isFile()). commit 29c698c5e4a5697946fdbad631da083b0b9da69b Author: Alan Garny Date: Thu Feb 4 11:56:21 2016 +0100 Some minor cleaning up [ci skip]. commit 07121e944ffbe316e3feb1e1c71dc2a916ae9a92 Author: Alan Garny Date: Thu Feb 4 11:55:57 2016 +0100 Some minor cleaning up [ci skip]. commit 89bf9f25a3393421e1a7a0ee5d6c753e98e80933 Author: Alan Garny Date: Thu Feb 4 11:45:06 2016 +0100 Some minor cleaning up [ci skip]. commit d521fd8ed4262e9dfd46db9617b9d40d88dbd3e6 Merge: ecf0f3a79 50123d759 Author: Alan Garny Date: Thu Feb 4 11:44:32 2016 +0100 Merge branch '\''master'\'' into issue825. commit 50123d7598894966569db55fdf150e61a08c2974 Author: Alan Garny Date: Thu Feb 4 11:43:21 2016 +0100 General: improved the retrieval of a save file name (#881) [ci skip]. commit ecf0f3a79c99bf9fdf1a8f3c0c6b10827b4daa59 Merge: f90af5d16 b500b0c36 Author: Alan Garny Date: Thu Feb 4 11:35:03 2016 +0100 Merge branch '\''master'\'' into issue825. commit b500b0c36a3faa2e61ebc05878ebf26eb5774cb0 Author: Alan Garny Date: Thu Feb 4 11:33:17 2016 +0100 General: improved the retrieval of a save file name (#881). commit f90af5d1642bfce82a3f1400ea7ce196b67cfd2b Author: Alan Garny Date: Thu Feb 4 11:10:37 2016 +0100 Some minor cleaning up [ci skip]. commit bd2c5cd08c1e7120707c472a510ad98be2ff7c45 Author: Alan Garny Date: Thu Feb 4 10:58:12 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 88f8960c7630815e84f5591a6a1d102d0a3eb53f Author: Alan Garny Date: Thu Feb 4 10:34:57 2016 +0100 Some minor cleaning up [ci skip]. commit e1403aed6df9b8aabb56b6c8a1ab1bfecd597a64 Author: Alan Garny Date: Wed Feb 3 18:58:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b8d061ccfc0b4cde23e57b0c66b148582cc8a0c7 Author: Alan Garny Date: Wed Feb 3 18:24:21 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit dab7c21ce271c4dd5f09c36b9919fb9236f03478 Author: Alan Garny Date: Wed Feb 3 18:08:43 2016 +0100 Some minor cleaning up [ci skip]. commit 05fcd0b1b6ce96b2f581c29324282551c5652e7f Author: Alan Garny Date: Wed Feb 3 17:40:58 2016 +0100 Some minor cleaning up [ci skip]. commit 51c265aea6ac481008a66236ccc3984d65ec960d Author: Alan Garny Date: Wed Feb 3 17:19:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit ca6c605c02dc61b4d1c8fb10c6b16d2f21e8f3d0 Author: Alan Garny Date: Wed Feb 3 17:18:03 2016 +0100 Some minor cleaning up [ci skip]. commit f6c7d0950ed142a099436323709223bc9774cfaf Author: Alan Garny Date: Wed Feb 3 16:26:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 3208787c8aca9a0473bef94df92d3b1a5eb1ae28 Author: Alan Garny Date: Wed Feb 3 16:00:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit ce929a8336ded4fa9667092376e7b1039af8025a Author: Alan Garny Date: Wed Feb 3 15:47:54 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 1a3279bab0a8d20bfe416db663d8ea54d13cb815 Author: Alan Garny Date: Wed Feb 3 15:45:36 2016 +0100 Some minor cleaning up [ci skip]. commit bdd2d241dfba6c90d673099ab7be23fa8bd76dc1 Author: Alan Garny Date: Wed Feb 3 15:41:22 2016 +0100 Some minor cleaning up [ci skip]. commit f64619086cd7b93c017a3260bde4e2eb338eec68 Author: Alan Garny Date: Wed Feb 3 15:30:14 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit ddbc5bfb8907d4447b22c790b7a30867a5a12771 Author: Alan Garny Date: Wed Feb 3 15:27:31 2016 +0100 Some minor cleaning up [ci skip]. commit 4159c461dbc89bc78017c5d81a17ee08d7d61470 Author: Alan Garny Date: Wed Feb 3 15:08:02 2016 +0100 Some minor cleaning up [ci skip]. commit 0a54f2d52bc07c70454738edf6e3a1761db15f47 Author: Alan Garny Date: Wed Feb 3 14:34:16 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit e7433ede63d181eab5a32143b55e1e0275bf7bda Merge: d6ac378f3 3dd993abf Author: Alan Garny Date: Wed Feb 3 14:24:20 2016 +0100 Merge branch '\''master'\'' into issue825. commit 3dd993abfa8e879811e4a845d8176b0b18d11b42 Author: Alan Garny Date: Wed Feb 3 14:23:48 2016 +0100 Reverting d175255990bbe1b5e68c61eba3693c932eb4bbd5 [ci skip]. A clean up gone wrong. We still definitely need this on OS X! commit d6ac378f3f297f29543985afa27b08a0c36c43ca Author: Alan Garny Date: Wed Feb 3 13:33:30 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit ca711fb393e2c6a60e4c3dc8175eeef4bd933727 Author: Alan Garny Date: Wed Feb 3 13:33:04 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 756544842e6855179bd5adf0cec741d9e44feae1 Author: Alan Garny Date: Wed Feb 3 13:30:27 2016 +0100 Some minor cleaning up [ci skip]. commit ed119660e3783738b6cec4a52f457a0057494953 Author: Alan Garny Date: Wed Feb 3 11:02:39 2016 +0100 Slight update to the developer'\''s documentation [ci skip]. commit 27cebeddb4dfa222e4447476c16c4b61d09db5d1 Author: Alan Garny Date: Tue Feb 2 17:19:21 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b0c3e4754792be438c12e6f9d21cb2a44e163016 Author: Alan Garny Date: Tue Feb 2 17:17:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 318267f96de93cf58873312343eab887533bd9ad Author: Alan Garny Date: Tue Feb 2 17:16:45 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 01f1e0bad5e2e7b1fbca1a75659fe6672cc65816 Author: Alan Garny Date: Tue Feb 2 16:24:44 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2d3cb62dc03199d118f0a7b72fde779d60e2bef9 Merge: 782b30dd9 f05a45132 Author: Alan Garny Date: Tue Feb 2 14:24:46 2016 +0100 Merge branch '\''master'\'' into issue825. commit f05a4513284925eaa1d8f8e9281be4d7863703d3 Merge: 49c792297 d46af5902 Author: Alan Garny Date: Tue Feb 2 14:23:40 2016 +0100 Merge pull request #880 from opencor/issue879 Single Cell view: fixed a small problem with the progress bar not always getting reset (closes #879). commit 49c792297b6b7d6d6f85ec9d35b7888b22f76fe3 Author: Alan Garny Date: Tue Feb 2 13:45:41 2016 +0100 Slight updates to our downloads page [ci skip]. commit d46af59022f674d639ce59c6de868bcffa9c2f24 Author: Alan Garny Date: Tue Feb 2 13:42:49 2016 +0100 Single Cell view: fixed an issue with the progress bar not always getting reset (#879). commit 782b30dd9696e1417d7852b167852943f05b7bd8 Merge: 914fe9264 57473db07 Author: Alan Garny Date: Tue Feb 2 10:37:41 2016 +0100 Merge branch '\''master'\'' into issue825. commit 914fe9264c73897d0a56947d71a979b2947e977c Author: Alan Garny Date: Mon Feb 1 17:41:50 2016 +0100 Merge branch '\''master'\'' into issue825. commit 57473db0727540d22c7fe5205b163da19b6aa7df Author: Alan Garny Date: Mon Feb 1 15:54:29 2016 +0100 New snapshots. commit 1064b63b8ad828edaad8b7180087e883577427a0 Author: Alan Garny Date: Mon Feb 1 15:48:27 2016 +0100 Slight update to our downloads page [ci skip]. commit f1617ea8acbf3ee61eeabf831db3d691f1c78545 Author: Alan Garny Date: Mon Feb 1 15:31:15 2016 +0100 Single Cell view: slight GUI improvement related to issue #876 [ci skip]. commit 0492a8f1811e7c4c8cc32b9b7ddd4b8163887bc1 Merge: 05fce705e 68f8a11f9 Author: Alan Garny Date: Mon Feb 1 15:28:22 2016 +0100 Merge pull request #878 from opencor/issue876 Single Cell view: fixed an incomplete plot and unreset progress bar for a finished simulation (closes #876). commit 68f8a11f9975c4e9e31ba70e0e8a190c22302486 Author: Alan Garny Date: Mon Feb 1 14:56:29 2016 +0100 Single Cell view: fixed an incomplete plot and unreset progress bar for a finished simulation (#876). commit 6ada961ee6486c6e2bb5519f51594f744c13a9d0 Author: Alan Garny Date: Mon Feb 1 14:21:17 2016 +0100 Single Cell view: some work on fixing an incomplete plot and unreset progress bar for a finished simulation (#876) [ci skip]. commit 05fce705e7e3e90986b29c708bca6b30d0b13ddc Author: Alan Garny Date: Mon Feb 1 14:00:40 2016 +0100 Some minor cleaning up [ci skip]. commit bcddfa6d0138600e7c6650c434a9cfbda8308bdc Merge: 5a7b9a399 32cba7d50 Author: Alan Garny Date: Mon Feb 1 11:08:23 2016 +0100 Merge pull request #877 from opencor/issue870 OpenSSL: upgraded to version 1.0.2f (closes #870). commit 32cba7d50a7ed79b18808955926854abba157ea0 Author: Alan Garny Date: Mon Feb 1 10:41:01 2016 +0100 OpenSSL: upgraded to version 1.0.2f (#870). commit 54e760f07b95d2dde14d650b5fc26bc9c325e277 Merge: 162193183 5a7b9a399 Author: David Brooks Date: Sun Jan 31 13:34:41 2016 +1300 Merge branch '\''master'\'' into renamebsml commit 5a7b9a399069212d0c81dbcc262607f4e5087924 Author: Alan Garny Date: Sat Jan 30 10:20:17 2016 +0100 Sample view: fixed a regression issue that resulted in text being on top of itself (closes #875). commit 83609033f2b38e9a25d9cd0b2fdabbac0e9eab20 Author: Alan Garny Date: Sat Jan 30 09:59:45 2016 +0100 Some minor cleaning up [ci skip]. commit d175255990bbe1b5e68c61eba3693c932eb4bbd5 Author: Alan Garny Date: Sat Jan 30 09:49:18 2016 +0100 Some minor cleaning up [ci skip]. commit 1621931834ec3e30f846907d9b87f92aca4d87d0 Merge: 801dbd49c f6159c865 Author: David Brooks Date: Sat Jan 30 10:37:01 2016 +1300 Merge branch '\''master'\'' into renamebsml commit f6159c86513544fdf7d6bd28b905fbe2d9b947c9 Author: Alan Garny Date: Fri Jan 29 17:44:52 2016 +0100 Oops, a small regression following our work on issue #866 [ci skip]. commit 65c10b00ae299c47aa3cbefad7a7401bf9249b7b Author: Alan Garny Date: Fri Jan 29 17:07:23 2016 +0100 Slight updates to the downloads page [ci skip]. commit 9cae99675c1395f944a91382ed10259637e3e3f9 Author: Alan Garny Date: Fri Jan 29 17:04:35 2016 +0100 Single Cell view: fixed a small problem with the progress bar not always getting reset (closes #874). commit 89f8d22cb507ebbaec03725d662768108c7ce17d Merge: 5a694b741 62d95de9c Author: Alan Garny Date: Fri Jan 29 16:47:52 2016 +0100 Merge pull request #873 from opencor/issue866 Single Cell view: fixed an issue with random plot glitches in the 2016-01-25 snapshot (closes #866). commit 62d95de9c6303d49b5640f00a9f2e08ce75dfa6b Author: Alan Garny Date: Fri Jan 29 16:18:36 2016 +0100 Single Cell view: fixed an issue with random plot glitches in the 2016-01-25 snapshot (#866). commit 5a694b741f8b214263b2a0a4643c121694d502ed Author: Alan Garny Date: Fri Jan 29 15:12:25 2016 +0100 Some minor cleaning up [ci skip]. commit d67fb9bd73c2a8d48b902272793ee9de280c9f42 Merge: 0a6ce28a8 59f3ce318 Author: Alan Garny Date: Fri Jan 29 13:56:39 2016 +0100 Merge pull request #872 from opencor/issue868 Single Cell view: fixed an issue with a graph panel rescaling itself when plotting a graph using F9, but not when using the '\''arrow'\'' button (closes #868). commit 0a6ce28a83540d6e1ce16eefc8d4b2ca84ab65f7 Author: Alan Garny Date: Fri Jan 29 13:35:43 2016 +0100 Slight update to the downloads page [ci skip]. commit 59f3ce318fe9eb8f5ee9f3d24c79186e56e31c1f Author: Alan Garny Date: Fri Jan 29 13:29:12 2016 +0100 Single Cell view: fixed an issue with a graph panel rescaling itself when plotting a graph using F9, but not when using the '\''arrow'\'' button (#868). commit 3bdb2926ece91dea8f6ec15825c8d5cc402f1dbe Author: Alan Garny Date: Fri Jan 29 10:36:48 2016 +0100 Slight updates to the downloads page [ci skip]. commit 723ad56ab77a59cc8fef546bbc22224b7952a10b Author: Alan Garny Date: Fri Jan 29 10:30:44 2016 +0100 Some minor cleaning up of the downloads pages [ci skip]. commit 82738b38eb82e1cac59d1a1dd8c7bf932cf3b5d0 Author: Alan Garny Date: Thu Jan 28 21:25:42 2016 +0100 Re-enabled BioSignalML support. commit 47a11443ca06a37748678766b1280771c8a9767b Merge: 852e00dda bbf774b27 Author: Alan Garny Date: Thu Jan 28 20:11:29 2016 +0100 Merge branch '\''master'\'' into issue825. commit bbf774b276d3256421d220cfb05cfb42af78a31d Merge: 2cda1c7a1 527ae5077 Author: Alan Garny Date: Thu Jan 28 20:09:34 2016 +0100 Merge pull request #871 from opencor/issue869 Viewer: parentheses are sometimes missing or unneeded (closes #869). commit 527ae5077eb0774ab0bd5bbb79fbb3786b7c4245 Author: Alan Garny Date: Thu Jan 28 19:41:01 2016 +0100 Temporarily disable BioSignalML support. commit 30bb63afef2a941116ff77956b7dad70a8d3c64a Author: Alan Garny Date: Thu Jan 28 19:30:09 2016 +0100 Temporarily disable BioSignalML support. commit 5240ea9ccec311b8354d4d5d03fe2e2cd6757e07 Author: Alan Garny Date: Thu Jan 28 19:15:07 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869). commit 423eb85e4938e0c9a32b809645d8f2cb1d84c4d0 Author: Alan Garny Date: Thu Jan 28 19:12:01 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 82982fa2a0c38a93d8e2ff2153a8fae572bba3fa Author: Alan Garny Date: Thu Jan 28 19:08:47 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit d26bdba844df1bbd514469b26345721f94cca010 Author: Alan Garny Date: Thu Jan 28 19:04:58 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 7bbb6fea2fb2229e5907689931630298a2f433ee Author: Alan Garny Date: Thu Jan 28 18:57:54 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 1755f12c78f04d5095e747d8032a455308e77984 Author: Alan Garny Date: Thu Jan 28 18:53:12 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit efac3dce0c4490ccd082156c8506dc58664eb746 Author: Alan Garny Date: Thu Jan 28 18:48:23 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit a93508d4390e6e14f1abbac4337408ad6fc1f81b Author: Alan Garny Date: Thu Jan 28 18:42:34 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit dfcfcc1ae7e2b99dd60a0a89a253555475a9e756 Author: Alan Garny Date: Thu Jan 28 17:55:35 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 13ad4d22601cc7988324058bd7b6099725c43b2c Author: Alan Garny Date: Thu Jan 28 17:33:27 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 1afbfb34464083bc932ac5d6ece929049b577553 Author: Alan Garny Date: Thu Jan 28 17:33:13 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 13ac0a12ad175a5cd19747dc79c6dbcb4339ea97 Author: Alan Garny Date: Thu Jan 28 16:58:16 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 94aae3bf3cf83fc0a578e14a92e521e4e15c8c57 Author: Alan Garny Date: Thu Jan 28 16:35:42 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit ae2cbe1d64be6cf57bb49eb53729f69f1f9e63ba Author: Alan Garny Date: Thu Jan 28 15:13:04 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit d7ac0f364ae6ece5a19a6d8f2ec3539d523e041b Author: Alan Garny Date: Thu Jan 28 15:10:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 98aa6886a83d247cc7fac10cb2b2c6346d324c1a Author: Alan Garny Date: Thu Jan 28 14:39:16 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 9251a77771a0de8aedf89cd47b0bebbe896aa926 Author: Alan Garny Date: Thu Jan 28 14:29:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 09708a6d4ddd59ab4bae3dddba15ab3f39812bbd Author: Alan Garny Date: Thu Jan 28 11:26:59 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit a5706f03f49673a81809cf86ebb86949a66a7c72 Author: Alan Garny Date: Thu Jan 28 11:06:08 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 39f14d3dc5eceb0ad1681559025dcaa759f72b16 Author: Alan Garny Date: Thu Jan 28 10:15:53 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 8dad028044bc07f470439a9bc924abe699a3f408 Author: Alan Garny Date: Wed Jan 27 18:39:40 2016 +0100 Some minor cleaning up [ci skip]. commit e6e6857143ea4b2446e2efc09a5f7b289f40aa59 Author: Alan Garny Date: Wed Jan 27 18:07:49 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 38371083d495b8c8d3b1aa8ec87a22f218ec2cce Author: Alan Garny Date: Wed Jan 27 17:28:45 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 6efc8f0977c481677b666e230171b760dda830df Author: Alan Garny Date: Wed Jan 27 17:25:44 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 7fde83a3aeb40ad3eda911a2d46784a244c9fb5a Author: Alan Garny Date: Wed Jan 27 17:21:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit f20ddcbada3ae4d01a08ed0b99d412ccfd165668 Author: Alan Garny Date: Wed Jan 27 16:57:48 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit f512fa545327b21855fe6bacef2e6d410246227f Author: Alan Garny Date: Wed Jan 27 16:51:06 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 6a6faeab328c8f03c419a3681a298b5738e1e0f9 Author: Alan Garny Date: Wed Jan 27 16:21:18 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 492a7f1c882556905c709772d0543f7075aa71aa Author: Alan Garny Date: Wed Jan 27 15:18:00 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 3813fd8660b735395d627b268a27d44863a7a161 Author: Alan Garny Date: Wed Jan 27 15:08:25 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded (#869) [ci skip]. commit 2cda1c7a18397a934feb5d4ae892c1276a2fa2e4 Author: Alan Garny Date: Wed Jan 27 11:25:01 2016 +0100 Some minor cleaning up [ci skip]. commit 852e00dda95a8cb24b3364829f829e6da81a1a7c Author: Alan Garny Date: Tue Jan 26 18:58:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 80be4dd8bd407936ad077a6937339bdd8c030d96 Author: Alan Garny Date: Tue Jan 26 15:05:09 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit bf9aabb14d2f1169e605f8ef336741b6a06e1242 Merge: dbb0929f7 be0e6237b Author: Alan Garny Date: Tue Jan 26 15:02:28 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit be0e6237b3d31dd74d1de00332f87974a6b99ae1 Author: Alan Garny Date: Tue Jan 26 14:57:30 2016 +0100 Some minor cleaning up [ci skip]. commit 5b8681fcd893ad438b45f1b8f72d0aae6aa3f1bb Author: Alan Garny Date: Tue Jan 26 14:52:46 2016 +0100 Some minor cleaning up [ci skip]. commit b7856ba844eab47783781e3190d1b101632fb23d Author: Alan Garny Date: Tue Jan 26 14:51:45 2016 +0100 Some minor cleaning up [ci skip]. commit dbb0929f772939e03371d713f30723894c8fa0dd Author: Alan Garny Date: Tue Jan 26 14:49:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 2c0369a60656f41a265ead205e16f480125bca2f Author: Alan Garny Date: Tue Jan 26 14:36:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 144817ba6c2b7a1e1d05f5882069deefd8df0322 Merge: 547a3e7b3 4d54dbf80 Author: Alan Garny Date: Tue Jan 26 14:33:00 2016 +0100 Merge branch '\''master'\'' into issue825. commit 4d54dbf8055e90f0407a0236de5483aecf027844 Author: Alan Garny Date: Mon Jan 25 17:21:43 2016 +0100 Slight updates to the user documentation and downloads page [ci skip]. commit 60ac1b173fc76232ecefdfd304814f60682c4a55 Author: Alan Garny Date: Mon Jan 25 17:00:47 2016 +0100 New snapshots. commit 62ddf2b60330afa1ea97ab8109cda4157f88d538 Author: Alan Garny Date: Mon Jan 25 16:46:49 2016 +0100 New snapshots. commit 2cc082cc377fc29b8d4aac4422fcd59f85dd2b71 Merge: aafa29456 3adf9a15e Author: Alan Garny Date: Mon Jan 25 16:14:59 2016 +0100 Merge pull request #865 from opencor/issue863 Viewer: fixed an issue with some wrong rendering (closes #863). commit 3adf9a15e39a839a470ec9f7ce10aa79697cc7c8 Author: Alan Garny Date: Mon Jan 25 16:02:05 2016 +0100 Slight update to the downloads page [ci skip]. commit 4ab9dd742a2090ee439dd01bd4254cafe57fc8e2 Author: Alan Garny Date: Mon Jan 25 15:59:30 2016 +0100 Viewer: fixed an issue with some wrong rendering (#863). commit 7d016cd08124e489c452a48b8934d1f72e70f5b1 Author: Alan Garny Date: Mon Jan 25 14:50:06 2016 +0100 Viewer: some work on fixing an issue with some wrong rendering (#863) [ci skip]. commit cdfa197b2824232f74151ac25a8c6ee6762e909e Author: Alan Garny Date: Mon Jan 25 11:45:47 2016 +0100 Slight improvement to our MathML tests (#863) [ci skip]. commit 0c4e88300165bbd59b5ba83ac49bf0c8040f7035 Author: Alan Garny Date: Sat Jan 23 16:07:56 2016 +0100 Viewer: some work on fixing an issue with some wrong rendering (#863) [ci skip]. commit aafa29456759ade55f61fe29028433da017b90e4 Author: Alan Garny Date: Sat Jan 23 14:21:40 2016 +0100 Slight update to the downloads page [ci skip]. commit bc968ec1b35446485b0777abb839cabe1a2aa307 Author: Alan Garny Date: Fri Jan 22 17:01:27 2016 +0100 Slight update to the README.txt file for our MathML tests (#862) [ci skip]. commit b0cdaffdfc4709799dd2ec02748785746865df80 Author: Alan Garny Date: Fri Jan 22 16:55:58 2016 +0100 Viewer: fixed a regression issue (closes #862). commit 10860fcff79047c520d3dd37f678d99f1dd3de8f Author: Alan Garny Date: Fri Jan 22 16:19:22 2016 +0100 Slight updates to the user'\''s documentation [ci skip]. commit 0c91098d1251b0f4968eb2fb536c9e2a40da3042 Author: Alan Garny Date: Fri Jan 22 14:49:16 2016 +0100 Slight update to the downloads page [ci skip]. commit fe43ab4facc5b7cf1032ccbba3c24b02123697db Author: Alan Garny Date: Fri Jan 22 14:43:34 2016 +0100 Some minor updates to the user and downloads documentation [ci skip]. commit 4b5ad6e046159826c54b56b18866a4861e0d10cd Merge: 8f4fe8ceb c0330fb6c Author: Alan Garny Date: Fri Jan 22 14:34:57 2016 +0100 Merge pull request #864 from opencor/issue590 Single Cell view: made the view more file specific (closes #590). commit 547a3e7b331e8c3b118ce10668e0e1d0023abb7c Merge: 98c5b2821 8f4fe8ceb Author: Alan Garny Date: Fri Jan 22 13:49:16 2016 +0100 Merge branch '\''master'\'' into issue825. commit c0330fb6c96216dcf749517d720034e28c65a0c0 Merge: c4adbaa32 8f4fe8ceb Author: Alan Garny Date: Fri Jan 22 13:48:52 2016 +0100 Merge branch '\''master'\'' into issue590. commit 8f4fe8ceb5e843d39f3f204eb6e6a40933b54173 Author: Alan Garny Date: Fri Jan 22 13:48:37 2016 +0100 Slight update to the developer documentation [ci skip]. commit c4adbaa32b746dc4d9c409bdb5d03ea499b3348d Author: Alan Garny Date: Fri Jan 22 13:41:12 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit becea6adaeeb1b8a865a052b9deb6dbdba833c67 Author: Alan Garny Date: Fri Jan 22 10:39:04 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 3e363fdfeb8de662f7872a08e3d054f8a59a32df Author: Alan Garny Date: Thu Jan 21 17:44:11 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 0c4e208293d10fed95030dd5601899c8e7046217 Author: Alan Garny Date: Thu Jan 21 15:18:06 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 5830b13a526904f3ebd3e3be88e86d8514bd1701 Author: Alan Garny Date: Thu Jan 21 15:09:40 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit a805c61c7154ab0ff60d4bb2be65627256d014ef Author: Alan Garny Date: Thu Jan 21 14:50:05 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d939a2030c0e26bb8ae77ea787aa54b06cf602d3 Author: Alan Garny Date: Wed Jan 20 16:02:24 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 047d4405b2adcba866e2e891b1c5a34d90d2d1af Author: Alan Garny Date: Wed Jan 20 15:49:17 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 9d25b76b0aed322606808ed092366caf47d6f59a Author: Alan Garny Date: Wed Jan 20 15:33:26 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit c2d69db81c5973d5c97712303f321fe4e205f543 Author: Alan Garny Date: Wed Jan 20 15:25:30 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 8d4348f0ded0a8cd5c1de66a1c9b5f0ac387e9a0 Author: Alan Garny Date: Wed Jan 20 15:06:45 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 82a6a1632f14b8d54ee723ad272f2094832c9343 Author: Alan Garny Date: Wed Jan 20 14:11:27 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 2dd88806b573c105eaf86f35500dc7b9edc5033a Author: Alan Garny Date: Tue Jan 19 17:49:12 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 9997d348fe521dc345484fb495ae0d7894aca5b6 Author: Alan Garny Date: Tue Jan 19 16:57:49 2016 +0100 Some minor cleaning up [ci skip]. commit ad0259cb4d617936b8cfa3f8500e7149bbe1bee3 Author: Alan Garny Date: Tue Jan 19 16:41:15 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit de17905ecee750bccf7d6acdfd2dfd2f2cdb08d8 Author: Alan Garny Date: Tue Jan 19 15:29:50 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 183d5cbe9c9543aff9d979e0507ab7d2db4cdbe4 Author: Alan Garny Date: Tue Jan 19 13:11:25 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 7ff8bd289b861604c888da7d247b0fcb42d4b206 Author: Alan Garny Date: Mon Jan 18 15:17:42 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit a5ebea2ffc822cc6027def2252b24c385474ff0a Author: Alan Garny Date: Mon Jan 18 15:08:37 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 9f77ee3c441abedc6f4e36bbbe5d403946fda70e Author: Alan Garny Date: Mon Jan 18 11:40:59 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 347d71b0aeaf25adb98d661c3fd93dc85772d79b Author: Alan Garny Date: Fri Jan 15 13:03:54 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 30363c19b4b34b3263caf786cf3b2445f660d5c1 Author: Alan Garny Date: Fri Jan 15 11:38:00 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit dec560a961b63d66270c9b1c9384ae30ea68be97 Author: Alan Garny Date: Fri Jan 15 09:26:08 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit f78cdd14165d44a6dc67cbb1f165bc1a2632be81 Author: Alan Garny Date: Fri Jan 15 09:18:11 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit c4d6ac179d1c48b99e96aea28d27372282cf4219 Author: Alan Garny Date: Thu Jan 14 19:21:41 2016 +0100 Some minor cleaning up [ci skip]. commit 2dabfb07c16bcc3061a0c4f471ee60fc5eecf455 Author: Alan Garny Date: Thu Jan 14 19:15:57 2016 +0100 Some minor cleaning up [ci skip]. commit 8f66208df3b5fc4ed63d6761c6ca5ee3c743ac41 Author: Alan Garny Date: Thu Jan 14 18:23:30 2016 +0100 Some minor cleaning up [ci skip]. commit bcd9c5e0806bd7a96b0d6eb7a46b909c1d8d72c6 Author: Alan Garny Date: Thu Jan 14 18:21:34 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 32c18412b56ebe1c188cc20ca8a2b08e27d719a4 Author: Alan Garny Date: Thu Jan 14 17:27:50 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 4e493dafd47b7b157826faee5a22879c8da6c8d1 Author: Alan Garny Date: Thu Jan 14 17:01:27 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 87882c3be140e6c9a41e8809a338bfe0f0fa05da Author: Alan Garny Date: Thu Jan 14 16:38:38 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit dcecfae293817acbd8c96b39f1ccf31f5955d096 Author: Alan Garny Date: Thu Jan 14 15:30:15 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 8f65a53196e3005954b58f60d339e0fe3854c1a2 Author: Alan Garny Date: Thu Jan 14 15:23:47 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 366cab0e7bcb5434082238871108bc41430dc5bc Author: Alan Garny Date: Thu Jan 14 14:49:26 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 79e0af2f79438270781e94ca576a6ae27211358d Author: Alan Garny Date: Thu Jan 14 13:05:54 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 42e9add86d8a3f93a25e7b8140a1c08ae05f44e0 Author: Alan Garny Date: Thu Jan 14 11:51:03 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 490e1605cfc1bb5aae28ff106aa1edbda9c643c2 Author: Alan Garny Date: Thu Jan 14 10:09:35 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit a4ec0bb1aa7de92b604ccc48ea5f12fa00d7a386 Author: Alan Garny Date: Wed Jan 13 18:10:51 2016 +0100 Some minor cleaning up [ci skip]. commit 9e8cf7ea83205a025a93837dbc56864ff7b63fd9 Author: Alan Garny Date: Wed Jan 13 18:08:24 2016 +0100 Some minor cleaning up [ci skip]. commit 98c5b28211bb0a1b2ed04b31a9fa594bffad5fc4 Merge: ed4d940a9 b2f5d3b00 Author: Alan Garny Date: Wed Jan 13 15:40:20 2016 +0100 Merge branch '\''master'\'' into issue825. commit 93287e275f705f7ead7c9ef98a60d7210c704829 Merge: ddd5aefb9 b2f5d3b00 Author: Alan Garny Date: Wed Jan 13 15:39:56 2016 +0100 Merge branch '\''master'\'' into issue590. commit ddd5aefb9d332433d12c400e2758751e556cd69e Author: Alan Garny Date: Wed Jan 13 14:48:51 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 49fa14e26fb143aabc8e95361f67c027df5bd6d3 Author: Alan Garny Date: Wed Jan 13 11:44:24 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d454a0d85f2adbe0f96c3fb9be48a3dc43b4f14d Author: Alan Garny Date: Tue Jan 12 17:20:19 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 988badeb1218573472a0e9cb9ade37cf27faa65b Author: Alan Garny Date: Tue Jan 12 16:53:09 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 914a72e268b6d48314a8088df658434785593803 Author: Alan Garny Date: Tue Jan 12 16:01:26 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 4f5cc1597de222bd1b966d7226c695bf9c8b13d5 Author: Alan Garny Date: Tue Jan 12 15:34:03 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d8c8553d6362fe99d95d57648e5380114aee3f18 Author: Alan Garny Date: Tue Jan 12 15:18:57 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit f942fe87f4947fbb817dda8cde829cfa260c7c14 Author: Alan Garny Date: Tue Jan 12 15:03:00 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit b5d07fa5d527a3f83c4163be405621365947b13f Author: Alan Garny Date: Tue Jan 12 14:00:46 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit bbdbb21256200c060ec439af5ab0324ff4eeec89 Author: Alan Garny Date: Tue Jan 12 13:30:16 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 2ccd89e765199fdbc9df49a4fd1301b1d22c77ad Author: Alan Garny Date: Tue Jan 12 11:53:28 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit f7697aa3bb8cb603effaf4a3b2ff0e442310a15a Author: Alan Garny Date: Tue Jan 12 11:14:35 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit cb38881f79b39e15db282f14ece09769bff9055a Author: Alan Garny Date: Tue Jan 12 11:05:47 2016 +0100 Some minor cleaning up [ci skip]. commit 27ec0113a70b263191b6330ac2b8c41f32e7675f Author: Alan Garny Date: Tue Jan 12 10:30:53 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 44f45711c8dbd24315b134b734cfcce38ae08271 Author: Alan Garny Date: Tue Jan 12 09:43:23 2016 +0100 Some minor cleaning up [ci skip]. commit 801dbd49cfe005b8ab36b3e47a2feca172a3db69 Merge: 88598a869 b2f5d3b00 Author: David Brooks Date: Tue Jan 12 15:19:54 2016 +1300 Merge branch '\''master'\'' into renamebsml commit cce02594d3fe44ad375b78499567293eb4b1cd86 Author: Alan Garny Date: Mon Jan 11 18:51:48 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit e54085eaeacbd7f7045d8b4eb4c915403709a107 Author: Alan Garny Date: Mon Jan 11 13:33:33 2016 +0100 Some minor cleaning up [ci skip]. commit 4eaa3587129330a47b14c5b9367c70a701c83d78 Author: Alan Garny Date: Mon Jan 11 13:17:28 2016 +0100 Some minor cleaning up [ci skip]. commit 6feac292ba176d4b45b1a4d4093566c4a10429b6 Author: Alan Garny Date: Mon Jan 11 11:31:40 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit dc7d3cb5bb9d07cae8f54f12c3c75f5eaf64ec29 Author: Alan Garny Date: Mon Jan 11 11:06:37 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit b2f5d3b0023dda2659b26ebdb44b6b1d96c6bb79 Author: Alan Garny Date: Sun Jan 10 11:43:47 2016 +0100 Slight updates to the developer documentation [ci skip]. commit 82976d4c376f1215ed6ccc3601ee20539449ef27 Merge: c69ac3fe3 118e90af2 Author: Alan Garny Date: Sun Jan 10 11:38:48 2016 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit c69ac3fe3f82505e5a62e78cece77e411db5fe7c Author: Alan Garny Date: Sun Jan 10 11:37:48 2016 +0100 jQuery: upgrade to version 2.2.0 (closes #861). commit d5c7d4e62ffe91ae9e5379776cb6ef99ba203247 Author: Alan Garny Date: Fri Jan 8 18:18:44 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 45620c20e3695730e9d25782cb90e84f52c7a5ea Author: Alan Garny Date: Fri Jan 8 16:19:57 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 1a8c7b7a83d7e1cbe1bd6d6f922e3ae0c6080a36 Author: Alan Garny Date: Fri Jan 8 16:17:36 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit bc6262610083456678f4e1acb98f635680aa7dcb Author: Alan Garny Date: Fri Jan 8 15:59:35 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 4f9af29d37832d02c1fb43c22e6e4ae0cb119099 Author: Alan Garny Date: Fri Jan 8 15:56:18 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit bd4aa5f7594f223b8254698449a506744506513c Author: Alan Garny Date: Fri Jan 8 15:39:03 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 5f4e364fe210ca67e85a34cf1253915a11b056b8 Author: Alan Garny Date: Fri Jan 8 15:21:48 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 764f3822c94fe7c62a5f01231adf0af72465cd8a Author: Alan Garny Date: Fri Jan 8 15:20:00 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 7762d0b86c0d87ec4cf668cfcb26930fc87198f7 Author: Alan Garny Date: Fri Jan 8 14:49:12 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d371fa3d6c5bf253d072db780b9f5fde61b844f6 Author: Alan Garny Date: Fri Jan 8 14:38:36 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 118e90af2d147111b9b479c2b99b811971a47848 Author: Alan Garny Date: Fri Jan 8 12:57:47 2016 +0100 Slight update to the downloads page [ci skip]. commit 3ef0adc56720b82a1f3487c64b4d7caf12a9734e Author: Alan Garny Date: Fri Jan 8 10:46:09 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit a841d7daefaedb93383d244e19807615adff35ed Author: Alan Garny Date: Fri Jan 8 10:07:36 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 454619165b0fafd0fd98203c92136a785be5dbf5 Author: Alan Garny Date: Fri Jan 8 09:50:10 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 7eaf4a4b8df7d5bd25cef4cbbfa74d1997cb9abc Author: Alan Garny Date: Thu Jan 7 18:31:28 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 77896681ba96cb3efb1ec92af72a734cc58c45dc Author: Alan Garny Date: Thu Jan 7 17:34:02 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit cf5eead5d6a3f9ba91baa5e2d6cc7eafdbe0c462 Author: Alan Garny Date: Thu Jan 7 17:05:16 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 449857113a1dbeff71ba8451685c3536cfb3ff5a Author: Alan Garny Date: Thu Jan 7 15:55:17 2016 +0100 Some minor cleaning up [ci skip]. commit 2681830d41f503ebda0d676db26bed0d1601dad3 Author: Alan Garny Date: Thu Jan 7 15:44:29 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit f187b2e42f83e0f079be95c80459604d726bb52b Author: Alan Garny Date: Thu Jan 7 15:37:18 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 2860115c46b0da39ce1fa3518f30abda2f48eaa0 Author: Alan Garny Date: Thu Jan 7 15:31:28 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 04013df139564ca1b5f7dbb9e58bb0f87f2ace21 Author: Alan Garny Date: Thu Jan 7 15:10:59 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 27f175232a5431522650ab1b0f5dd0c98f672dbe Author: Alan Garny Date: Thu Jan 7 15:06:37 2016 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit ed4d940a906c07cc74bc0961e0f13e70490e38fc Merge: 555d0f96d 5bc50d0ac Author: Alan Garny Date: Thu Jan 7 13:43:35 2016 +0100 Merge branch '\''master'\'' into issue825. commit fb5926459476dae793a181cc56bac563fc10e0ae Merge: 3528359e0 5bc50d0ac Author: Alan Garny Date: Thu Jan 7 13:43:16 2016 +0100 Merge branch '\''master'\'' into issue590. commit 5bc50d0ac20815836ea4d21ad8396f565d6f83fe Author: Alan Garny Date: Thu Jan 7 12:54:59 2016 +0100 Some minor cleaning up [ci skip]. commit ef8898192d4419ced7f2cd8ab5dcbe793e8310e3 Merge: 90f3dce69 34448ef09 Author: Alan Garny Date: Thu Jan 7 12:48:54 2016 +0100 Merge pull request #860 from opencor/issue859 LLVM: upgraded to version 3.7.1 (closes #859). commit 34448ef09361f763d7d0c11cda9afcdde6828d1f Author: Alan Garny Date: Thu Jan 7 11:54:36 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859). commit 165c527be780c2ea1c22379d9c218b3cba8ef19e Author: Alan Garny Date: Thu Jan 7 10:34:17 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit be14b4814f3a52f1db0c2b2f7bdf2680e94c6abd Author: Alan Garny Date: Thu Jan 7 09:58:54 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit 8a66a068229cd41ce5d957681e69761d607772fe Author: Alan Garny Date: Thu Jan 7 09:01:01 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit a5ab2b67c2a46daad0c56ee25c1b229a63aa3274 Author: Alan Garny Date: Wed Jan 6 19:59:38 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit f07f45ff2d86fecabe67f217bf6c8a0a73262312 Author: Alan Garny Date: Wed Jan 6 18:15:37 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit 0913651fb9166ec274748e5d922c6572c80f7745 Author: Alan Garny Date: Wed Jan 6 16:42:08 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 (#859) [ci skip]. commit 88598a869865770739dbd26a50751e53e46654e4 Author: David Brooks Date: Tue Dec 22 10:42:25 2015 +1300 Use the full name "BioSignalML" instead of abbreviated versions for file names etc in plugin. commit 555d0f96d2b75f24a553f6e2fee2a6dece3058fd Merge: 2e18be2a0 90f3dce69 Author: Alan Garny Date: Mon Dec 21 14:29:54 2015 +0100 Merge branch '\''master'\'' into issue825. commit 3528359e01644c90edb40a6388cdf574b3317b1e Merge: 7b770af91 90f3dce69 Author: Alan Garny Date: Mon Dec 21 14:29:27 2015 +0100 Merge branch '\''master'\'' into issue590. commit 90f3dce6996a3d6002ff81bd35dd633aa65d32b0 Merge: 0237cfc83 8be0ed453 Author: Alan Garny Date: Mon Dec 21 14:22:34 2015 +0100 Merge pull request #858 from opencor/LLVM LLVM: some minor cleaning up. commit 8be0ed45322c1751d73d19da58719926a7302635 Author: Alan Garny Date: Mon Dec 21 13:53:38 2015 +0100 Some minor cleaning up. commit 31b1a0ab9b19722726b5f80a247c11d30f44a932 Author: Alan Garny Date: Mon Dec 21 11:19:07 2015 +0100 Some minor cleaning up [ci skip]. commit 2e18be2a0c38b5c7cf8b0760380b5e3c84e0227d Merge: 16b3a6f4b 0237cfc83 Author: Alan Garny Date: Mon Dec 21 02:12:38 2015 +0100 Merge branch '\''master'\'' into issue825 [ci skip]. commit 7b770af9183460f4c69734a89197c7733717aa74 Merge: 60cb12b81 0237cfc83 Author: Alan Garny Date: Mon Dec 21 02:12:04 2015 +0100 Merge branch '\''master'\'' into issue590 [ci skip]. commit 0237cfc83b891add4aab59deb3e9eece035c8c95 Author: Alan Garny Date: Mon Dec 21 02:10:30 2015 +0100 Some minor cleaning up [ci skip]. commit 60cb12b816084b917e53cf5144a8ee48ba8dacad Merge: 05c1c44e5 a2aac4f0f Author: Alan Garny Date: Mon Dec 21 01:39:36 2015 +0100 Merge branch '\''master'\'' into issue590. commit 16b3a6f4b81dbbc1c3a357113eb5d80f59021c1d Merge: 61cd55642 a2aac4f0f Author: Alan Garny Date: Mon Dec 21 01:39:10 2015 +0100 Merge branch '\''master'\'' into issue825. commit a2aac4f0fbcff983250eeb074845790afee29e7d Merge: 856577561 a8e4dcd7c Author: Alan Garny Date: Mon Dec 21 01:38:02 2015 +0100 Merge pull request #857 from opencor/LLVM Disabled the output of warnings/errors from LLVM. commit a8e4dcd7cec0824b38045fcb8261ffc40e126afd Author: Alan Garny Date: Mon Dec 21 01:13:30 2015 +0100 Disable the output of warnings/errors from LLVM. commit b19f370426b47ea6639bf74e040ffddd0cd15e38 Author: Alan Garny Date: Mon Dec 21 00:02:02 2015 +0100 Disable the output of warnings/errors from LLVM [ci skip]. commit e1ac3bc5499056869316fc43be947cd2cd904bfc Author: Alan Garny Date: Sun Dec 20 23:10:40 2015 +0100 Disable the output of warnings/errors from LLVM [ci skip]. commit 1d538504984551135af4aed27b36d933147526d1 Author: Alan Garny Date: Sun Dec 20 22:08:14 2015 +0100 Disable the output of warnings/errors from LLVM [ci skip]. commit eaee83df46fc7d99cea950194a885205fdd7abbc Author: Alan Garny Date: Sun Dec 20 19:45:27 2015 +0100 Disable the output of warnings/errors from LLVM [ci skip]. commit 8565775618aa3b5485fc3374750494af117aeefd Author: Alan Garny Date: Sun Dec 20 18:19:19 2015 +0100 Some minor cleaning up [ci skip]. commit 05c1c44e5846628d346ce9ce3b9fb8dd61a3e29f Author: Alan Garny Date: Fri Dec 18 18:40:24 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit bdee04498703c5bf4afdec5d12bed7d5aadf7d4d Author: Alan Garny Date: Fri Dec 18 18:38:07 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 8a91a1fe62e0f91aabb8ae390ee47a4d6c5d2abe Author: Alan Garny Date: Fri Dec 18 17:53:31 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 2999d843d072a51bdc1914fc4c16f4c81f330e96 Author: Alan Garny Date: Fri Dec 18 17:49:36 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 4553d7b65241bd771d0e2cf43200cfd4d8f14d9a Author: Alan Garny Date: Fri Dec 18 15:43:19 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit fb1374f1afd1e2095d9020a83d36e7dd5039ad23 Author: Alan Garny Date: Fri Dec 18 15:38:45 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit ff612dc5ec749fafa36d4dd7ccd97989a695fd32 Author: Alan Garny Date: Fri Dec 18 14:43:10 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 0ec6a30162638fef5fd4a9fbdda6740b5dc297a7 Author: Alan Garny Date: Fri Dec 18 14:32:45 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 4b230ea8602d5a4085221f3cb3c5e5582d4ae85f Merge: 8a3e84d8d 258ae4c83 Author: Alan Garny Date: Fri Dec 18 13:55:21 2015 +0100 Merge branch '\''master'\'' into issue590. commit 61cd55642d568b8a48f7f001057e5eb244447578 Merge: d5344a03f 258ae4c83 Author: Alan Garny Date: Fri Dec 18 13:55:04 2015 +0100 Merge branch '\''master'\'' into issue825. commit 258ae4c838e13cfc65e73704c0b948dcfd485de0 Author: Alan Garny Date: Fri Dec 18 13:53:17 2015 +0100 Slight update to the developer documentation [ci skip]. commit 3848d638530890d72402d3f2cf6eee73113b7f0d Author: Alan Garny Date: Thu Dec 17 20:05:47 2015 +0100 Tests: oops, some refactoring gone wrong for Windows... commit d5344a03fbf4b0614911fa3d29ad9b26b044e2f3 Merge: b8efab572 a6f28e0ac Author: Alan Garny Date: Thu Dec 17 19:33:34 2015 +0100 Merge branch '\''master'\'' into issue825. commit 8a3e84d8d185798c39ff95303892c01f067f14dc Merge: d6aa9b082 a6f28e0ac Author: Alan Garny Date: Thu Dec 17 19:33:08 2015 +0100 Merge branch '\''master'\'' into issue590. commit a6f28e0acb00601fa5d2393187febfceb51669ed Author: Alan Garny Date: Thu Dec 17 19:23:16 2015 +0100 Travis CI: checking whether we can now retrieve the BioSignalML binaries. commit b8efab572edee28c671630ca1352865ae0ba7b14 Author: Alan Garny Date: Thu Dec 17 19:16:34 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825). commit 3f14d8f3ce31cfcda58873fa821cf686557a17cd Merge: ee5a021b0 a1fdb8efe Author: Alan Garny Date: Thu Dec 17 17:16:50 2015 +0100 Merge branch '\''master'\'' into issue825 [ci skip]. commit d6aa9b0821646b8fdfe3e1362219c81433bb2670 Merge: 53e5d9254 a1fdb8efe Author: Alan Garny Date: Thu Dec 17 17:14:19 2015 +0100 Merge branch '\''master'\'' into issue590. commit a1fdb8efe64fee94a7b706a550fc0b52118c47b9 Author: Alan Garny Date: Thu Dec 17 17:14:01 2015 +0100 Some minor cleaning up [ci skip]. commit 973c1acf8f52a3ea4e43c428a1e72420da807743 Author: Alan Garny Date: Thu Dec 17 16:41:41 2015 +0100 Slight update to the developer documentation [ci skip]. commit ee5a021b0437334a9e29807449b32bb894e637cb Merge: b0b7e964a 1ea65fdf0 Author: Alan Garny Date: Thu Dec 17 16:22:26 2015 +0100 Merge branch '\''master'\'' into issue825. commit 53e5d9254cb745f0ecf4e9c7d1e6835c51d02f44 Merge: dedbd490f 1ea65fdf0 Author: Alan Garny Date: Thu Dec 17 16:15:51 2015 +0100 Merge branch '\''master'\'' into issue590. commit 1ea65fdf04a071333d753f06f518cc998114cd43 Author: Alan Garny Date: Thu Dec 17 16:14:58 2015 +0100 Slight fix to the developer documentation [ci skip]. commit dece7d0de94dd2df0b8549494ddd9e75fcbe99e0 Merge: 24ab493dd 7c0267962 Author: Alan Garny Date: Thu Dec 17 16:12:15 2015 +0100 Merge pull request #855 from opencor/issue850 Don'\''t make the building/packaging of OpenCOR depend on the '\''build'\'' directory anymore (closes #850). commit 7c0267962e27c3113d9eb2a4ebc537a7498ba6d1 Author: Alan Garny Date: Thu Dec 17 15:41:40 2015 +0100 Re-disabling BioSignalML (the server is down or something!). commit a51b47ce2e96e9718f9b562acdefd8a5991acf0a Author: Alan Garny Date: Thu Dec 17 15:00:28 2015 +0100 Slight improvements to our CellML tools'\'' tests. commit 57e6aa671206c5c2bdfe4505446467584abc9015 Author: Alan Garny Date: Thu Dec 17 14:27:47 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 9199ae85c77aed00a1f3be957f94ff871b5bf59c Author: Alan Garny Date: Thu Dec 17 14:25:17 2015 +0100 Re-enabled BioSignalML support since the binaries can now be retrieved on Windows [ci skip]. commit f353190051c5958eed856be55711459111f1813e Author: Alan Garny Date: Thu Dec 17 14:21:01 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 694ec5e6d433bffde57a27217bea53a56d781a4b Author: Alan Garny Date: Thu Dec 17 11:07:28 2015 +0100 Some minor cleaning up [ci skip]. commit 99f2bb986da2a4efa1fc43749596be2cf5ba96ed Author: Alan Garny Date: Thu Dec 17 11:04:05 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit dc03c37b28046d1b4d1f57da96052dea419f1675 Author: Alan Garny Date: Thu Dec 17 10:55:11 2015 +0100 Some minor cleaning up [ci skip]. commit 1dd514bb3d30669a5ddcd291e04695af9553227b Author: Alan Garny Date: Thu Dec 17 10:54:14 2015 +0100 Some minor cleaning up [ci skip]. commit 32e5454714dd54478c063bee4a5ce61e56594eb8 Author: Alan Garny Date: Thu Dec 17 10:28:03 2015 +0100 Some minor cleaning up [ci skip]. commit ca54247a6ebddbda276efbf9590bd3225abc237a Author: Alan Garny Date: Thu Dec 17 10:25:05 2015 +0100 Some minor cleaning up [ci skip]. commit 6990597bcc8440814bbb890b76582d9e27b5f053 Author: Alan Garny Date: Thu Dec 17 10:20:02 2015 +0100 Some minor cleaning up [ci skip]. commit 60992db1efa01628b25fb7a65df65a82fe08c0e6 Merge: 741e67c6d 24ab493dd Author: Alan Garny Date: Thu Dec 17 09:26:25 2015 +0100 Merge branch '\''master'\'' into issue850. commit 24ab493dd2302cf753153eeeba085eefc16caf4f Merge: 4d6bb4831 8a4d349a3 Author: Alan Garny Date: Wed Dec 16 23:57:22 2015 +0100 Merge pull request #854 from dbrnz/devel Drop `_d` postfix in Windows'\'' debug binaries. commit 8a4d349a3a5f9c9330babdbe2a7a69ea15a1e8d6 Author: David Brooks Date: Thu Dec 17 10:23:53 2015 +1300 Drop `_d` postfix in Windows'\'' debug binaries. commit 741e67c6d24a2e131a41990f97263fff70028018 Author: Alan Garny Date: Wed Dec 16 21:00:39 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 27fc28b9725b08946aa708ee3d2ce93cbd279ee5 Author: Alan Garny Date: Wed Dec 16 19:48:24 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 8d9ac273d9fe954f9c46ab21d1010fce22aecb45 Author: Alan Garny Date: Wed Dec 16 18:38:09 2015 +0100 Disable BioSignalML support for now (since the binaries can'\''t currently be retrieved on Windows) [ci skip]. commit afb74f6343e1a505ecb3285fd9193e5aa3ddfe5c Author: Alan Garny Date: Wed Dec 16 18:37:23 2015 +0100 Some minor cleaning up [ci skip]. commit 09d55638a013e9e0c62f8d7c1b48f9a84a48f333 Author: Alan Garny Date: Wed Dec 16 17:47:39 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 8b0da57ab13528c46c61e8c1449a984e33dafda2 Author: Alan Garny Date: Wed Dec 16 17:45:15 2015 +0100 Some minor cleaning up [ci skip]. commit 12aaa3d1e996d2f91b84e835299411599902ab9a Author: Alan Garny Date: Wed Dec 16 17:18:50 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 366039523849e0133c8266f6925adc9a2ac0330e Author: Alan Garny Date: Wed Dec 16 14:55:44 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 568fccdfca4b504d0c6ee3a85827b626185340ca Author: Alan Garny Date: Wed Dec 16 14:49:16 2015 +0100 Some minor cleaning up [ci skip]. commit db1c7eb417aad54c2866261b6cbbc736c02c9dc3 Author: Alan Garny Date: Wed Dec 16 14:36:29 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 85ab9d2a69cdb8ab7981b06d576bed7290e93c52 Author: Alan Garny Date: Wed Dec 16 14:15:42 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the '\''build'\'' directory (#850) [ci skip]. commit 4d6bb4831b43f4932207c1a20880bb109b5a9459 Author: Alan Garny Date: Wed Dec 16 14:11:12 2015 +0100 Some minor cleaning up [ci skip]. commit a895977f44115446b45f6565942ebacfec056fc2 Author: Alan Garny Date: Wed Dec 16 13:54:51 2015 +0100 Some minor cleaning up [ci skip]. commit 0d8f8f2c16b8c8cd891f9301eae3a58f321af611 Merge: afac46ebb b0dbc64d1 Author: Alan Garny Date: Wed Dec 16 13:47:46 2015 +0100 Merge pull request #853 from dbrnz/libbsml Some work towards adding BioSignalML export to OpenCOR (#841). commit dedbd490ff8ad30a09813e7de6f1ad57cf55be4c Author: Alan Garny Date: Wed Dec 16 11:02:00 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit b0dbc64d12b65319380ab6ab3b20a2e7bc94e43a Author: David Brooks Date: Wed Dec 16 22:28:02 2015 +1300 Update to use latest BioSignalAPI release, removing 32-bit versions. commit d1e6ec41121c10d08a0811f69f42261fc68a8223 Merge: 7bf4905fd afac46ebb Author: David Brooks Date: Wed Dec 16 15:31:03 2015 +1300 Merge branch '\''master'\'' into libbsml commit b0b7e964a8c78a486f2e9a6827de70d0adbeb0ae Merge: d406ca51f afac46ebb Author: Alan Garny Date: Tue Dec 15 18:40:05 2015 +0100 Merge branch '\''master'\'' into issue825. commit c94a5f025e45bb48515c261538331609f628564d Merge: 5c00cff3e afac46ebb Author: Alan Garny Date: Tue Dec 15 18:38:22 2015 +0100 Merge branch '\''master'\'' into issue590. commit afac46ebb755ebe67d16c1619383a213ba661937 Author: Alan Garny Date: Tue Dec 15 18:34:36 2015 +0100 Slight comment update [ci skip]. commit f4baac51bf2f1dafc70da4c6d1e70f401a4f61df Author: Alan Garny Date: Tue Dec 15 18:34:22 2015 +0100 A slight improvement until we implement issue #848 [ci skip]. commit a602ea08a416474f7a4c427b178d545ffd593a44 Merge: 2d6ba0d1d 56d7f9f7a Author: Alan Garny Date: Tue Dec 15 18:21:39 2015 +0100 Merge pull request #847 from opencor/issue846 Calls to QFileDialog now handle the case where a user cancels their action (closes #846). commit 56d7f9f7ade51aac9a85ed2b33f75524091b4941 Author: Alan Garny Date: Tue Dec 15 17:41:49 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846). commit b8be7ab70586c2cbb2b69498ce78cd703f11ca00 Author: Alan Garny Date: Tue Dec 15 17:40:17 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846). commit 3a622082152fe1c76ea1200acec1cd24364ba88a Author: Alan Garny Date: Tue Dec 15 17:19:23 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846) [ci skip]. commit 3b5e9799670e542ee2648886811fbc8dcded6ee8 Author: Alan Garny Date: Tue Dec 15 17:03:25 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846) [ci skip]. commit 35ac97d29f19f06b16c548e996ddd9f2befb0fe7 Merge: 3edd42644 2d6ba0d1d Author: Alan Garny Date: Tue Dec 15 16:41:10 2015 +0100 Merge branch '\''master'\'' into issue846. commit 2d6ba0d1d8f040e2d7c0c4b2aa81ed63e1071dec Author: Alan Garny Date: Tue Dec 15 16:40:44 2015 +0100 Slight updates to the download page [ci skip]. commit 3edd42644a4beb8cc5cfb052764007cac24f2b15 Author: Alan Garny Date: Tue Dec 15 16:17:46 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846) [ci skip]. commit 3877c861d0e5e71491cd8cc0ee50b7ec4a09fd1b Author: Alan Garny Date: Tue Dec 15 15:58:14 2015 +0100 Some minor cleaning up [ci skip]. commit d8f1dff7cfc20311bd03f1b921222cbaeffe0525 Author: Alan Garny Date: Tue Dec 15 15:57:51 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846) [ci skip]. commit e8ac85fb75cd4a2afa5be35bb75cd2db3902cad9 Author: Alan Garny Date: Tue Dec 15 15:26:58 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action (#846) [ci skip]. commit c8cf80b085b31d40bf518bde4c926063afaa7d55 Author: Alan Garny Date: Tue Dec 15 14:34:45 2015 +0100 Some minor cleaning up [ci skip]. commit 0238110ca5f53d81de2177c00a602ead0c5cafec Author: Alan Garny Date: Tue Dec 15 11:28:29 2015 +0100 Some work on using a user'\''s proxy settings (#845) [ci skip]. commit 468a267b0a223653a3d6271a095c5a585dd886a2 Author: Alan Garny Date: Tue Dec 15 11:11:42 2015 +0100 Slight improvement to our Core::formatMessage() method [ci skip]. commit dccbd7392c3546440657bdcf6ed658462bbf6008 Author: Alan Garny Date: Mon Dec 14 18:29:14 2015 +0100 Revert the last commit (!!) [ci skip]. commit ecbfd8cb5345bf2b079a052c809d1ec65c5d34f0 Author: Alan Garny Date: Mon Dec 14 18:22:53 2015 +0100 Some minor cleaning up [ci skip]. commit 5c00cff3e99db913ddd08b26c5bafa32de451cfb Author: Alan Garny Date: Mon Dec 14 18:06:13 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 9052be0c1f63026cc929049b0388c866eba52933 Author: Alan Garny Date: Mon Dec 14 17:48:44 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d7e02397339db0e6458a44221be4eb250d1f30f8 Author: Alan Garny Date: Mon Dec 14 16:43:47 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 5f61cf5898597d6e62bc7dd8dd6b9e8609a833d3 Author: Alan Garny Date: Fri Dec 11 19:03:13 2015 +0100 Merge branch '\''master'\'' into issue590. commit 33d5617f59312750b7d9b43b1d481e429e9211b4 Merge: 87a77cf3c 977474819 Author: Alan Garny Date: Fri Dec 11 19:02:51 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit d406ca51f32be0f2a528271eb771d6fd6bb63246 Merge: 131be6932 977474819 Author: Alan Garny Date: Fri Dec 11 18:35:46 2015 +0100 Merge branch '\''master'\'' into issue825. commit 977474819a82a1819c19ac8213e6e7c168d031e2 Merge: e8929b626 e2da49c0f Author: Alan Garny Date: Fri Dec 11 18:34:14 2015 +0100 Merge pull request #844 from opencor/issue843 Dropped the Windows 32-bit and Linux 32-bit versions of OpenCOR (closes #843). commit e2da49c0fcae593624c71857f6bacbe1c1866d8b Author: Alan Garny Date: Fri Dec 11 18:20:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843). commit 2c09fe9ac69346f2f7830128f94bd3610c1f3e38 Author: Alan Garny Date: Fri Dec 11 17:33:03 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843). commit 4589e629af022ecf8dc88aa611997827c98e1bf6 Author: Alan Garny Date: Fri Dec 11 17:26:26 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit d98a1d25c5bf222d0f2a47987eba240f6f361aca Author: Alan Garny Date: Fri Dec 11 17:18:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 4001be020585caf567a21d20628ca34a2b5223c4 Author: Alan Garny Date: Fri Dec 11 17:05:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 43e39b6cf515e68b61d136af43283f6e72179d1c Author: Alan Garny Date: Fri Dec 11 17:02:28 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 4da1bdf13a28688fa7bf95a8f2704845a0811a65 Author: Alan Garny Date: Fri Dec 11 16:54:11 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit d330f9db54034907c530ed5245dd2d37694383c9 Author: Alan Garny Date: Fri Dec 11 16:53:53 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 9bed89a83d72c1d6a4b0204671df72a88e4aa3c9 Author: Alan Garny Date: Fri Dec 11 16:43:41 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit dd4c63f0a2cab69ecaaf7b7262935de1520f65d1 Author: Alan Garny Date: Fri Dec 11 15:35:52 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 331112a47d4bc8f9d4724b81a2fde354f49d909c Author: Alan Garny Date: Fri Dec 11 11:56:23 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 60e39e39078cd4c54ee02d61a61dc278e5ee3234 Author: Alan Garny Date: Fri Dec 11 11:34:17 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 68887b927d4665a2bf9d50faa727b726354868fd Author: Alan Garny Date: Fri Dec 11 11:32:10 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 453793845a0ab9cc46ab8ecc580b53c914752006 Author: Alan Garny Date: Fri Dec 11 10:59:52 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit f6a405f21a10baf947f2f51fe6d3399bc92f6d65 Author: Alan Garny Date: Fri Dec 11 10:34:58 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit c94c0b5de59e0543a6acf6f8a1a47e1ebecadeaa Author: Alan Garny Date: Fri Dec 11 09:56:17 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 9de5fefd208abfa83c39b3c3a75fe67ac7cdb03b Author: Alan Garny Date: Fri Dec 11 09:43:11 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit a8a26dcbe541223e53eaa59cb7a896e9edc229ee Author: Alan Garny Date: Thu Dec 10 17:55:23 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 9ba7d36f6168eef2cdd92ab2be0dcaf2214d662f Author: Alan Garny Date: Thu Dec 10 17:40:04 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit cdf32c6f28ca22880dc6d625d91c828e07d67afa Author: Alan Garny Date: Thu Dec 10 14:45:53 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit ad482c9afcd06cdb601b3afc7f1e349106d77f45 Author: Alan Garny Date: Thu Dec 10 11:16:37 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 5fe32c3d07c9987419d624e1de7aec5ad81f8bfc Author: Alan Garny Date: Thu Dec 10 11:13:40 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR (#843) [ci skip]. commit 87a77cf3c179542fa1431752ad8bab5d04c7a899 Author: Alan Garny Date: Wed Dec 9 18:10:58 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit eabaad78d22d91e2c71118d09f5a315e657c6ad4 Author: Alan Garny Date: Wed Dec 9 18:08:59 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 798b45c14b34ff9c9168609600cc38e019536661 Author: Alan Garny Date: Wed Dec 9 18:08:12 2015 +0100 Merge branch '\''master'\'' into issue590. commit 131be693223f4e17828dafc48ba2f632991617be Merge: f24531db3 e8929b626 Author: Alan Garny Date: Wed Dec 9 18:04:29 2015 +0100 Merge branch '\''master'\'' into issue825. commit e8929b62667c00b5272039f4f387a5d9ec10374a Author: Alan Garny Date: Wed Dec 9 18:01:37 2015 +0100 Some minor cleaning up [ci skip]. commit c5cb02fabee7c77add1d0b45c57cd3e29e11572e Author: Alan Garny Date: Wed Dec 9 17:41:13 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 650dd966288bc7e68c9504028934e6e418c48ed9 Author: Alan Garny Date: Wed Dec 9 17:23:42 2015 +0100 Some minor cleaning up [ci skip]. commit f24531db319a69ca9c1f2918d941ac502182c439 Merge: 6aaa8b4c0 89e69f0a3 Author: Alan Garny Date: Wed Dec 9 15:51:09 2015 +0100 Merge branch '\''master'\'' into issue825. commit 17d5dc949d92088ba0ee9f5a8afd015e7bc12ed4 Merge: dbc59167c 89e69f0a3 Author: Alan Garny Date: Wed Dec 9 15:50:51 2015 +0100 Merge branch '\''master'\'' into issue590. commit 89e69f0a39759cfa22f2aff4a87fb1ef989386f3 Author: Alan Garny Date: Wed Dec 9 15:50:36 2015 +0100 Some minor cleaning up [ci skip]. commit dbc59167ce07299e548ae160fdc6556b6ac97408 Author: Alan Garny Date: Wed Dec 9 15:30:06 2015 +0100 Single Cell view: some work on making the view more file specific (#590) [ci skip]. commit 6aaa8b4c07fa31013bfb89c10ba715dd66525906 Merge: 89f6228b8 17bade4c3 Author: Alan Garny Date: Wed Dec 9 09:49:46 2015 +0100 Merge branch '\''master'\'' into issue825. commit 17bade4c3e22d5f951806110530b9f2c470c26bf Author: Alan Garny Date: Wed Dec 9 09:48:52 2015 +0100 Slight update to the developer documentation [ci skip]. commit 89f6228b84d990681b35d162eb431f5ffdecdc6f Merge: 952b36a70 cb8b722bd Author: Alan Garny Date: Tue Dec 8 19:23:18 2015 +0100 Merge branch '\''master'\'' into issue825. commit cb8b722bd2411009669af2d99c6e7ec0cab08c22 Author: Alan Garny Date: Tue Dec 8 19:22:45 2015 +0100 Some minor cleaning up [ci skip]. commit 952b36a702c2c8f814a51ebeba2f9af6679e4c0f Merge: f04fee0fa 20e2f7d52 Author: Alan Garny Date: Tue Dec 8 19:17:45 2015 +0100 Merge branch '\''master'\'' into issue825. commit 20e2f7d5259a60efb3be4e40ceb26d76c85e59bf Author: Alan Garny Date: Tue Dec 8 19:08:45 2015 +0100 Some minor cleaning up [ci skip]. commit 4a5768d5e18d80c2023999d245320869dbc0e5b2 Author: Alan Garny Date: Tue Dec 8 17:41:45 2015 +0100 Some minor cleaning up [ci skip]. commit b1fc6c2d2ebbdeb127d270f1d83a517cbe24bc6b Author: Alan Garny Date: Tue Dec 8 17:12:56 2015 +0100 Some minor cleaning up [ci skip]. commit befc15a5303c7c91c89649a503fbcad2b1c99f11 Author: Alan Garny Date: Tue Dec 8 15:54:58 2015 +0100 Some minor cleaning up [ci skip]. commit 6da114bf63b815ee50e2553a457d9fe0842d9a01 Author: Alan Garny Date: Tue Dec 8 15:45:35 2015 +0100 Some minor cleaning up [ci skip]. commit ef0666be8a7aaac102a3f21aae1275786e68a107 Author: Alan Garny Date: Tue Dec 8 15:15:06 2015 +0100 Some minor cleaning up [ci skip]. commit f04fee0fa3fdb0b0bb6aaed35ac10279e0c0132c Merge: a1d93d5b5 7112a81e3 Author: Alan Garny Date: Tue Dec 8 14:03:26 2015 +0100 Merge branch '\''master'\'' into issue825. commit 7112a81e3d4aa02037287c549fe388317f7aa786 Author: Alan Garny Date: Tue Dec 8 14:02:57 2015 +0100 Some minor cleaning up [ci skip]. commit a1d93d5b5de97494b2a363ed45ac00e75095cf61 Merge: df6d90628 d25099705 Author: Alan Garny Date: Mon Dec 7 17:30:17 2015 +0100 Merge branch '\''master'\'' into issue825. commit d2509970565ef7bd74b68f8b3fa73db8a36dd7ef Merge: 5c43f6e4d 8333731c1 Author: Alan Garny Date: Mon Dec 7 17:29:15 2015 +0100 Merge pull request #842 from opencor/issue840 OpenSSL: upgraded to version 1.0.2e (closes #840). commit 8333731c1ff1242441236769ce61b1bc1ed124b6 Author: Alan Garny Date: Mon Dec 7 17:06:04 2015 +0100 OpenSSL: upgraded to version 1.0.2e (#840). commit df6d906288818f777b322bc85eed400803962463 Merge: 6b921f6be 5c43f6e4d Author: Alan Garny Date: Mon Dec 7 16:39:01 2015 +0100 Merge branch '\''master'\'' into issue825. commit 5c43f6e4d0085247ca68dc527a3c8dc336261d2b Author: Alan Garny Date: Mon Dec 7 16:37:59 2015 +0100 Prevent messages here and there from being selectable [ci skip]. Note: to prevent QMessageBox’s text from being selectable (on OS X only, apparently) had an indirect (?!) effect on our Single Cell view and the marker of our graph panels… commit c2745808ac8cc1b3153bb1d7e08b851734e45c42 Author: Alan Garny Date: Fri Dec 4 17:24:45 2015 +0100 Some minor cleaning up [ci skip]. commit 6b921f6bec319fb2353f3340def374fb7e87ac48 Author: Alan Garny Date: Fri Dec 4 16:17:26 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 5a7d6e2f0d6a3a797d6bc44d659e8ed14acdf105 Author: Alan Garny Date: Fri Dec 4 15:49:50 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 56d5f5a950fb4184c73b338f21f6d5d3b088cf82 Author: Alan Garny Date: Fri Dec 4 15:49:39 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 64d2330c080fad11a5586bc0825bbd160913bc0d Author: Alan Garny Date: Fri Dec 4 15:16:17 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 3b7c6904763d79d5558e7cef9c05758e2234daed Author: Alan Garny Date: Fri Dec 4 14:42:23 2015 +0100 Some minor cleaning up [ci skip]. commit da04b02b52ecde36a5d775c6acde57e4db7a76bd Author: Alan Garny Date: Fri Dec 4 11:56:53 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit a2fe9bbf84091687a7e97da9e41a09157fc4c325 Author: Alan Garny Date: Fri Dec 4 11:14:48 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 889cbf4b78d2586a88534eb53bb51c5c0a954771 Author: Alan Garny Date: Fri Dec 4 10:05:45 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 0979038f09b35c185a4d19014025146331860c21 Author: Alan Garny Date: Fri Dec 4 09:47:49 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 7062a3022b2ccd62033a6809ef975fe11d08fcf2 Author: Alan Garny Date: Thu Dec 3 19:19:48 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 22e57650b5ddf113040a715ff4e85e96b2a17303 Author: Alan Garny Date: Thu Dec 3 18:17:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit c43f533f35a303c160e8f9cedad613b8f0e780b2 Author: Alan Garny Date: Thu Dec 3 18:00:55 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 2a4e6be56b2f1b1bc6e36c5de6a9dfb7b6345ad6 Author: Alan Garny Date: Thu Dec 3 17:11:14 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 9ac15fcba392db0a5e13f0935a5f66de9524932f Author: Alan Garny Date: Thu Dec 3 13:28:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 70d4f18e1307a3f8a39ba99e1bb68e83b78fb9a4 Author: Alan Garny Date: Thu Dec 3 10:44:06 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 6b7fe57fc8cfb23c448641a06ce1fa55dd3d4131 Author: Alan Garny Date: Thu Dec 3 10:38:10 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 60c02cc2b520a69a492918bbd4ec82d7357eb332 Author: Alan Garny Date: Thu Dec 3 10:29:00 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 28d7b2c6ae22f93e3c072a0a026f0788324f266f Author: Alan Garny Date: Thu Dec 3 10:26:50 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 8f7cc4bf0fb0e725791ea2d42f8098fd18889ab1 Author: Alan Garny Date: Wed Dec 2 19:56:06 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 5e96bc324713a7b6df07f9d04796e72f4ee5396c Author: Alan Garny Date: Wed Dec 2 19:49:55 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 5aee0add961db88446f8931b0d53fdb7da8a7030 Author: Alan Garny Date: Wed Dec 2 19:39:35 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 508c4f3d80bbd8f0bdadd326120b721c377ea460 Author: Alan Garny Date: Wed Dec 2 18:15:24 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 7e64733718fedbbacbcf5afa401e7a4fa74cfc93 Author: Alan Garny Date: Wed Dec 2 18:11:51 2015 +0100 Some minor cleaning up [ci skip]. commit 55e0f7afd19a25a1a1aa1fff45e3582adf3b4444 Author: Alan Garny Date: Wed Dec 2 17:09:27 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 75017ceb596bd3c2129d38316a703efc1ed90188 Author: Alan Garny Date: Wed Dec 2 15:51:26 2015 +0100 Some minor cleaning up [ci skip]. commit 98dd599f1135c67f7c3c0a1162f452645c9ee04a Author: Alan Garny Date: Wed Dec 2 15:49:38 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 399fdffa98306b759995de96252ac29b53ef963f Author: Alan Garny Date: Wed Dec 2 15:46:09 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit daf8a243320df71fe1bc3ec9a153879ead98ae24 Author: Alan Garny Date: Wed Dec 2 15:45:08 2015 +0100 Some minor cleaning up [ci skip]. commit e4139ac056e7715b82d549b8755e9c402d809424 Author: Alan Garny Date: Wed Dec 2 15:16:12 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 5638a7226ea3bc82c29b5d592508076bf72e8516 Author: Alan Garny Date: Wed Dec 2 13:38:40 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 39da6f390383db9ae7f638c5e609f42797b26484 Author: Alan Garny Date: Wed Dec 2 12:55:21 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 257e4ec0675923d7586f40413631d50e7cc6e3fd Author: Alan Garny Date: Wed Dec 2 11:44:35 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 929e8fe471a5097136643534ff8f36bb989d0bfd Author: Alan Garny Date: Wed Dec 2 11:36:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 6dcda71726f673b03ec610370ca7f5950a5201d6 Author: Alan Garny Date: Wed Dec 2 11:17:32 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 42af0f52fdec4512e809cb30699f86ac03fb1b45 Author: Alan Garny Date: Wed Dec 2 11:03:16 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 29043de10769e89d271d2cd82171348e4750ec39 Author: Alan Garny Date: Wed Dec 2 10:12:42 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit ca30110ef9e5e7f7eca5266cd3193ba99e483e13 Merge: 5545d59fa a87b95baa Author: Alan Garny Date: Tue Dec 1 19:52:24 2015 +0100 Merge branch '\''master'\'' into issue825. commit a87b95baa32f8bc9f86e40858ed585a70eaad046 Author: Alan Garny Date: Tue Dec 1 19:51:40 2015 +0100 Travis CI: argh! Apparently, we canNOT '\''safely'\'' run tests on OS X (see 2bcdece). commit 5545d59faabdbd2ff4dae2e599322bc5dfad0bb8 Merge: ebddd580a bcc4d7ac0 Author: Alan Garny Date: Tue Dec 1 19:42:23 2015 +0100 Merge branch '\''master'\'' into issue825. commit bcc4d7ac0ebb51c31650fd2af2620b95e2b98691 Author: Alan Garny Date: Tue Dec 1 19:31:40 2015 +0100 ZIP support: updated the Qt ZIP files. commit 0ed7187510a79524e65833857c13ba8b0fdc7ba6 Author: Alan Garny Date: Tue Dec 1 18:54:02 2015 +0100 Some minor cleaning up [ci skip]. commit 2bcdece8cc7513cbfd986db8b5f71abbd54bd750 Author: Alan Garny Date: Tue Dec 1 18:40:08 2015 +0100 Travis CI: apparently, we can '\''safely'\'' run tests on OS X even though we are using Qt 5.4.2 and not Qt 5.5.1 [ci skip]. We are skipping CI for now since we are currently having a small problem with QZip… commit ebddd580a21f8790df08df0aae77a5983c482e11 Merge: 68f50ab27 c6431a430 Author: Alan Garny Date: Tue Dec 1 17:04:25 2015 +0100 Merge branch '\''master'\'' into issue825. commit c6431a430fe0226b3f7611e2571f8053bba53e16 Author: Alan Garny Date: Tue Dec 1 17:03:48 2015 +0100 ZIP support: updated the Qt ZIP files. commit 68f50ab2759a9d6500271d7f07ed6866ce42148f Author: Alan Garny Date: Tue Dec 1 15:46:10 2015 +0100 COMBINE archive: improved the tests [ci skip]. commit cf3d36e6ba24b0fca5608dcc26dc8f4a8b4f34a7 Author: Alan Garny Date: Tue Dec 1 14:53:43 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 485b0ab1c7a5373ebf6dec977a02a8c927ce5df6 Author: Alan Garny Date: Tue Dec 1 14:13:26 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit 02673d084dbf2c9071ec6345c607705943b0ae4e Author: Alan Garny Date: Tue Dec 1 12:51:38 2015 +0100 Slight update to the downloads documentation [ci skip]. commit fb784dbec088f3de294ea0272432d40c8f19cb73 Merge: 53288de38 1c867f016 Author: Alan Garny Date: Tue Dec 1 12:49:12 2015 +0100 Merge branch '\''master'\'' into issue825. commit 1c867f0167b896f6c7e9441b5d1b102c8e04b5b5 Merge: be6ea445a 134845d13 Author: Alan Garny Date: Tue Dec 1 12:47:47 2015 +0100 Merge pull request #839 from opencor/issue838 CellML Text view: now require the user'\''s agreement before saving a CellML file using a different CellML version (closes #838). commit 134845d13914f9a264ba382c55c9134e09127fc2 Author: Alan Garny Date: Tue Dec 1 11:49:31 2015 +0100 CellML Text view: now require the user'\''s agreement before saving a CellML file using a different CellML version (#838). commit a97c63c5ef3a7495e620c012dabd05bd3ec7003d Author: Alan Garny Date: Tue Dec 1 11:40:09 2015 +0100 CellML Text view: some work towards requiring the user'\''s agreement before saving a CellML file using a different CellML version (#838) [ci skip]. commit be6ea445aa074d3da80cde36744ed786c6014831 Author: Alan Garny Date: Tue Dec 1 11:07:47 2015 +0100 Some minor cleaning up [ci skip]. commit ee8f7ab7399ecd4e5de1b724b736a7eeac98df62 Author: Alan Garny Date: Tue Dec 1 09:45:00 2015 +0100 Some minor cleaning up [ci skip]. commit 09e93863a9e774c2c460f3234926a9726b2f59d1 Author: Alan Garny Date: Mon Nov 30 10:44:58 2015 +0100 Slight updates to the user documentation [ci skip]. commit 53288de381eb4f496ebb92da574a22572e9b5dd2 Author: Alan Garny Date: Fri Nov 27 18:05:02 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive [ci skip]. commit bbd19ec7a6157b860208e5f7ea15cc7bfb23ac80 Merge: c1c224c9c 26774f86d Author: Alan Garny Date: Fri Nov 27 17:34:47 2015 +0100 Merge branch '\''master'\'' into issue825. commit 26774f86df5f959a8446958c25b328b2b4d3af4c Author: Alan Garny Date: Fri Nov 27 17:34:22 2015 +0100 Some minor cleaning up [ci skip]. commit c1c224c9c50479b53d9be21176c2172202e8429e Author: Alan Garny Date: Fri Nov 27 17:23:54 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit b712c5211fc8fd01d8f2d311dc74a54fe6a18ad8 Merge: a04540b40 9aad3e31b Author: Alan Garny Date: Fri Nov 27 13:00:57 2015 +0100 Merge branch '\''master'\'' into issue825. commit 9aad3e31b9b5460f9aff46e8b41430d5ad3ac3c6 Author: Alan Garny Date: Fri Nov 27 12:58:52 2015 +0100 Some minor cleaning up. commit 177b16333ff730381b807d3c1291527d2a97d0f2 Author: Alan Garny Date: Fri Nov 27 11:50:22 2015 +0100 Some minor cleaning up [ci skip]. commit eb4b736aaacfb5584fcb5380affc7ef6c6494dc0 Author: Alan Garny Date: Fri Nov 27 11:46:12 2015 +0100 Some minor cleaning up [ci skip]. commit a04540b40ea413062f61f69a91bcaf2a2ee12dbd Merge: 0dd919037 cd63c31f3 Author: Alan Garny Date: Fri Nov 27 10:50:28 2015 +0100 Merge branch '\''master'\'' into issue825. commit cd63c31f307b5f51f329d5c63ecd304a37b5d8ab Author: Alan Garny Date: Fri Nov 27 10:49:51 2015 +0100 CellML export: slight improvement to the way things are formatted when exporting a CellML 1.1 model to CellML 1.0 [ci skip]. commit fe9bf3695d2a88eb3dc01c6abcfcff352081aad1 Author: Alan Garny Date: Fri Nov 27 10:41:46 2015 +0100 Some minor cleaning up [ci skip]. commit 0dd919037d3c8b98a3ca8af6897720723e8e848d Merge: db1f391b9 bf4b9f9ab Author: Alan Garny Date: Fri Nov 27 10:15:16 2015 +0100 Merge branch '\''master'\'' into issue825. commit bf4b9f9ab56b60634dec25680637b7ed356b9d76 Author: Alan Garny Date: Fri Nov 27 10:14:51 2015 +0100 Slight updates to the user documentation [ci skip]. commit 34503202c39a8a29fab3cba7a43f86e258a42ce8 Author: Alan Garny Date: Fri Nov 27 09:48:09 2015 +0100 Some minor cleaning up [ci skip]. commit db1f391b931ce5724f9d0aa788c40b2c25a85ce6 Author: Alan Garny Date: Thu Nov 26 18:26:20 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 36767dbfdc9b66d93ff71712632be36ca833587d Author: Alan Garny Date: Thu Nov 26 18:13:11 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML (#825) [ci skip]. commit 52db149ef6b9c70431978a48f8bd16ad29840895 Merge: 6c8fcd399 623ea6558 Author: Alan Garny Date: Thu Nov 26 10:51:44 2015 +0100 Merge pull request #837 from opencor/issue836 CellML support: the latest stable version of CellML is now used when creating a new CellML file (closes #836). commit 623ea6558698f418f9997330de9d93da782fc87e Author: Alan Garny Date: Thu Nov 26 10:36:37 2015 +0100 CellML support: the latest stable version of CellML is now used when creating a new CellML file (#836). commit 7bf4905fdd1b7c6304d75819e4b6cd892b8eb1ee Merge: 0dca2a67a 6c8fcd399 Author: David Brooks Date: Thu Nov 26 12:26:45 2015 +1300 Merge branch '\''master'\'' into libbsml commit 6c8fcd399f093c4f27efda2cdeae547e36f0491e Author: Alan Garny Date: Wed Nov 25 16:34:21 2015 +0100 New snapshots. commit 433a99c3d3b34e8fa1db0f0ead9184aca547fe60 Author: Alan Garny Date: Wed Nov 25 16:33:05 2015 +0100 Slight update to the user documentation [ci skip]. commit fb64ee411cfef894a6b7ba150b770e4c7c55ad9b Author: Alan Garny Date: Wed Nov 25 16:23:33 2015 +0100 Oops, had forgotten to translate something (#830) [ci skip]. commit ae855126ffbd3368e09e341f5dcb13cc25c1b0e6 Author: Alan Garny Date: Wed Nov 25 16:19:55 2015 +0100 Slight update to the downloads page [ci skip]. commit 5a3288f6ffc5c0feaa70b7e05df43472f419198f Merge: 7378f5b7c 0c2eefa56 Author: Alan Garny Date: Wed Nov 25 15:43:33 2015 +0100 Merge pull request #834 from opencor/issue830 CellML Text view: hyphens and periods are now allowed in cmeta:id'\''s (closes #830). commit 0c2eefa5640c8a1907e1e0393231808c68e931bf Author: Alan Garny Date: Wed Nov 25 15:21:48 2015 +0100 CellML Text view: hyphens and periods are now allowed in cmeta:id'\''s (#830). commit 7378f5b7cea7d7e7624fd77024b09a5d169bb5b6 Merge: ba3f11e67 9ca08571f Author: Alan Garny Date: Tue Nov 24 19:35:37 2015 +0100 Merge pull request #833 from opencor/issue832 SED-ML support: refactored some SED-ML related code in the Single Cell view plugin (closes #832). commit 9ca08571f6ab575b15faa8d4890316e0f514d9ff Author: Alan Garny Date: Tue Nov 24 19:22:04 2015 +0100 SED-ML support: refactored some SED-ML related code in the Single Cell view plugin (#832). commit ba3f11e67eb042efa12b596b18002ac75e545242 Author: Alan Garny Date: Tue Nov 24 13:50:25 2015 +0100 Slight update to our downloads page [ci skip]. commit e9f10773286a3e616af4a290a27df562bc8173a2 Author: Alan Garny Date: Tue Nov 24 13:12:21 2015 +0100 Single Cell view + SED-ML: improved the formatting of the SED-ML files we generate [ci skip]. commit 77170f14ca9c4cebfc405104fb31f4e57ca9ee33 Author: Alan Garny Date: Tue Nov 24 11:40:57 2015 +0100 Raw SED-ML view: minor GUI improvement [ci skip]. commit f25084c28c1ca4c5e06253f660c68483d8e8bffd Merge: a11d8f424 cc72c9850 Author: Alan Garny Date: Tue Nov 24 11:38:46 2015 +0100 Merge pull request #831 from opencor/issue682 Raw SED-ML view (closes #682). commit cc72c9850a1cb7ad586fdaf344a465412fa19de3 Author: Alan Garny Date: Tue Nov 24 10:55:53 2015 +0100 Some work towards having a Raw SED-ML view (#682). commit ca5ef42a9a488f4231ea0e46a312a834a2f16fe2 Author: Alan Garny Date: Tue Nov 24 10:31:57 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit 6bcb173b3e0d7c19ee5edcdba93b0b0830740e28 Author: Alan Garny Date: Tue Nov 24 10:02:46 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit 8f808a1aad12c70645d5ea8ea8cca5d8c0b5043a Author: Alan Garny Date: Mon Nov 23 17:09:54 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit b967125def141383da219a8c1b100811f9903795 Author: Alan Garny Date: Mon Nov 23 16:03:12 2015 +0100 Some minor cleaning up [ci skip]. commit cd4906ed6ac850af94f763ca73b5a875f2d4b7a2 Author: Alan Garny Date: Mon Nov 23 15:32:23 2015 +0100 Some minor cleaning up [ci skip]. commit 5ef391ece7469000c1dc10fa72f9d421d3a8e01a Author: Alan Garny Date: Mon Nov 23 15:18:02 2015 +0100 Some minor cleaning up [ci skip]. commit 8ab9d3f944f7bf9f696641f23e0bbb73286a162f Author: Alan Garny Date: Mon Nov 23 14:51:44 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit ad5c51fae2a095e3d0420e4fdc00d2e3a9f114c1 Author: Alan Garny Date: Mon Nov 23 12:59:43 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit f9e80e3d046a38db3583062aee9a227c2f2673a6 Author: Alan Garny Date: Mon Nov 23 11:48:30 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit 9804fe69b1dee40db5bbf801e86c41820ebc81bd Author: Alan Garny Date: Mon Nov 23 10:42:19 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. commit c90f4d077c66c5b8bef0e784686fba1f327e5a16 Author: Alan Garny Date: Sun Nov 22 11:17:39 2015 +0100 Some work towards having a Raw SED-ML view (#682) [ci skip]. We currently have a copy/paste of both the CoreCellMLEditing and RawCellMLView plugin, which we now need to customise for SED-ML... commit a11d8f424f003ec11fff51bc120ae35fe8eeae3f Author: Alan Garny Date: Sun Nov 22 01:27:13 2015 +0100 Some minor cleaning up [ci skip]. commit 4890de43ddc891ee52bb28a33af38c3e2f87b614 Author: Alan Garny Date: Fri Nov 20 21:12:15 2015 +0100 Some minor cleaning up. commit 18edf4391b9e9414755fa09b896ae472271eb639 Author: Alan Garny Date: Fri Nov 20 18:09:34 2015 +0100 Some minor cleaning up [ci skip]. commit 2357298c0443bed2ac5981ef820cadc2c4a7a599 Author: Alan Garny Date: Fri Nov 20 17:49:28 2015 +0100 Some minor cleaning up. commit e8cfce7efb60a0111d8b6b9b8254db4a415aa970 Author: Alan Garny Date: Fri Nov 20 17:34:43 2015 +0100 Some minor cleaning up [ci skip]. commit df007ebde2b06d54aa0d77289586c24d1c458155 Author: Alan Garny Date: Fri Nov 20 17:08:13 2015 +0100 Some minor cleaning up. commit a584d49609354bbdca9f938a18cc39b5c07794d0 Author: Alan Garny Date: Fri Nov 20 16:20:22 2015 +0100 Some minor cleaning up [ci skip]. commit 828c370002c32a67ac82e056a6dd1e7d31eb8ded Author: Alan Garny Date: Fri Nov 20 14:56:14 2015 +0100 Some minor cleaning up. commit 3538f64ea2aa31de68387c32a100c07255c3e20f Author: Alan Garny Date: Fri Nov 20 14:03:46 2015 +0100 Some minor cleaning up [ci skip]. commit ea43851acfb55345d62015d256a4afa7a147d573 Author: Alan Garny Date: Fri Nov 20 13:49:35 2015 +0100 Some minor cleaning up [ci skip]. commit df469e1bb7a42c3db3f877f90f0c7f5ef4e60dda Author: Alan Garny Date: Fri Nov 20 13:17:27 2015 +0100 Some minor cleaning up [ci skip]. commit e703d36e19ebfbefd4adb2ea0942cfc2f3e1f6b8 Author: Alan Garny Date: Thu Nov 19 17:54:32 2015 +0100 Argh, issue #826 wasn'\''t building on Windows [ci skip]. commit 32ef6bbc4da85e2a5a5fcd62515bd9780f1d16eb Merge: bd8f20d4b b1da4bca8 Author: Alan Garny Date: Thu Nov 19 17:39:20 2015 +0100 Merge pull request #829 from opencor/issue826 SED-ML support: made it possible to create a new SED-ML file (closes #826). commit b1da4bca8dfc27f8547e9842fbda9495c1372e6a Merge: 48722cc28 bd8f20d4b Author: Alan Garny Date: Thu Nov 19 16:54:06 2015 +0100 Merge branch '\''master'\'' into issue826. commit bd8f20d4b012e98e2be40c44efd3eb8fe648e2cb Author: Alan Garny Date: Thu Nov 19 16:52:30 2015 +0100 Some minor cleaning up [ci skip]. commit 43cb5bc231f47f552610cc469eb63849ca279dee Merge: 18ecb3edf af26325eb Author: Alan Garny Date: Thu Nov 19 16:49:27 2015 +0100 Merge pull request #828 from opencor/issue827 CellML support: don'\''t distinguish between CellML 1.0 and CellML 1.1 anymore when creating a new CellML file (closes #827). commit 18ecb3edf397ae5c90ea6f6dd8964ed908b44f2c Author: Alan Garny Date: Thu Nov 19 16:38:43 2015 +0100 Slight update to the download page following issue #826 [ci skip]. commit 48722cc281dab6d140c2aa0038b28f2bb1593f56 Author: Alan Garny Date: Thu Nov 19 16:35:40 2015 +0100 SED-ML support: made it possible to create a new SED-ML file (#826). commit 6b03cabd30e8b609ff702ef7161369f7ea27d01c Author: Alan Garny Date: Thu Nov 19 16:25:52 2015 +0100 Slight update to the download page following issue #827 [ci skip]. commit af26325eb11e70c20da53deb97b0ce0382b98e67 Author: Alan Garny Date: Thu Nov 19 16:21:41 2015 +0100 CellML support: don'\''t distinguish between CellML 1.0 and CellML 1.1 file when creating a new CellML file (#827). commit cc86c0a73428bb480b6d0d7a374fbaa7209e427a Merge: b9feb2a35 5a0b63d8b Author: Alan Garny Date: Wed Nov 18 18:11:40 2015 +0100 Merge pull request #824 from opencor/issue820 Single Cell view: X axis now lines up when adding a new graph panel (closes #820). commit 5a0b63d8b15f79f909839168b0c8622b474e72af Author: Alan Garny Date: Wed Nov 18 17:41:52 2015 +0100 Single Cell view: X axis now lines up when adding a new graph panel (#820). commit b9feb2a356b9791a7aca585bd3a1a4bf8a2c4ed5 Author: Alan Garny Date: Wed Nov 18 17:25:08 2015 +0100 Some minor cleaning up [ci skip]. commit 3a7bdbc5d5245980ab585c273eaf15277336ef99 Author: Alan Garny Date: Wed Nov 18 15:25:55 2015 +0100 Slight updates to the user documentation [ci skip]. commit 36d1231fea9dd3149d3e40428867fabed922957c Merge: 8534e990e 3464edb88 Author: Alan Garny Date: Wed Nov 18 15:17:00 2015 +0100 Merge pull request #823 from opencor/issue822 Raw CellML view: "reformat" doesn'\''t un-escape HTML entities anymore (closes #822). commit 3464edb8895f80c5b5f3459ad9315edca91a280c Author: Alan Garny Date: Wed Nov 18 14:32:05 2015 +0100 Raw CellML view: "reformat" doesn’t un-escape HTML entities anymore (#822). Well, actually, QDomAttr::value() does automatically un-escape, so we escape back… commit 8534e990e1b0983ebc15c8104f5b3dc6e398ec42 Author: Alan Garny Date: Wed Nov 18 14:28:30 2015 +0100 Some minor cleaning up [ci skip]. commit 0dca2a67acfde11784994aad2a0456b31e643c5d Author: David Brooks Date: Wed Nov 18 21:31:35 2015 +1300 Get a clean build with current `libbiosignalml`. commit 51f25ae88333f54879a2d7c4c7cbcf8ebb6e0c9c Author: David Brooks Date: Wed Nov 18 21:28:46 2015 +1300 Update `typedobject` and `libbiosignalml` libraries. commit 753d536be277f5a886e1081e32f8750e7aef6f8a Author: David Brooks Date: Wed Nov 18 21:19:09 2015 +1300 Updates required for latest master. commit 8537cfa3fcec5a440ded3d6e1f163ccc65e95519 Merge: 6238c08ea d2521c38f Author: David Brooks Date: Wed Nov 18 20:41:26 2015 +1300 Merge branch '\''master'\'' into libbsml commit d2521c38f5111573b3896b4a1f127e85347a1625 Merge: 8f349be7e f76f1135a Author: Alan Garny Date: Tue Nov 17 18:39:08 2015 +0100 Merge pull request #821 from opencor/issue812 libSBML: upgraded to version 5.12.0 (closes #812). commit f76f1135abdcbac909ac8f9c37aeec4b2e6b8e01 Author: Alan Garny Date: Tue Nov 17 17:12:47 2015 +0100 There is no need to specify a deployment target of 10.7 for our various APIs. Indeed, they are ‘only’ libraries, so no GUI-related stuff involved. Also, to specify the deployment target through ccmake means that we must have the corresponding SDK (i.e. Mac OS X 10.7 SDK in the present case), which we don’t (or, rather, can’t bother to have). commit f381ce6b222c134d15782d2abb03c20fc5fc5ff2 Author: Alan Garny Date: Tue Nov 17 16:39:14 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 (#812) [ci skip]. commit bee2a504a0dd5f44ad2c509e5941272e7f7ce5cc Author: Alan Garny Date: Tue Nov 17 16:12:11 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 (#812) [ci skip]. commit 8a3641a7afe191029aaee38caa10e1f5845d3c9f Author: Alan Garny Date: Tue Nov 17 15:53:49 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 (#812) [ci skip]. commit 8f349be7e83508f1308ef0127312c8f1b379983e Author: Alan Garny Date: Mon Nov 16 18:47:26 2015 +0100 Some minor cleaning up [ci skip]. commit b813da05aa25446ce54e87a074db0eb51719cd7c Merge: 3301b66bc ac2eebca2 Author: Alan Garny Date: Mon Nov 16 18:31:40 2015 +0100 Merge pull request #819 from opencor/issue816 libgit2: upgraded to version 0.23.4 (closes #816). commit ac2eebca271200b12033a3a37c8a91b4aa300754 Author: Alan Garny Date: Mon Nov 16 18:07:03 2015 +0100 libgit2: upgraded to version 0.23.4 (#816). commit 58a55b4e0d3afef2d032d98f4dcefeff57a262de Author: Alan Garny Date: Mon Nov 16 17:50:12 2015 +0100 libgit2: some work towards upgrading to version 0.23.4 (#816) [ci skip]. commit 3301b66bc178a0e333e243576ee563d388accba6 Author: Alan Garny Date: Mon Nov 16 17:48:45 2015 +0100 Updated our downloads page [ci skip]. commit a572d226f924f53f3a32a43a6c1dfe3460ff3dd4 Merge: b451acadb ed218cc45 Author: Alan Garny Date: Mon Nov 16 17:40:56 2015 +0100 Merge pull request #818 from opencor/issue817 Single Cell view: development mode is not allowed anymore on a read-only file (closes #817). commit ed218cc45d6a05df39c0a91f893299493f97f915 Author: Alan Garny Date: Mon Nov 16 17:08:25 2015 +0100 Single Cell view: development mode is not allowed anymore on a read-only file (#817). commit b451acadb5b6aae0986808c2594e98ad1122c00c Author: Alan Garny Date: Sun Nov 15 18:17:25 2015 +0100 Argh, wrong copy/paste from our Qt 5.5 branch. We don'\''t need and want XcbQpa (since it'\''s not available on Qt 5.4.2)! commit c3fbe4928e9534cb6fd5929c6139757613c903bc Author: Alan Garny Date: Sun Nov 15 18:14:22 2015 +0100 Linux packaging: not sure why I removed it, but we need DBus on Linux! commit 5f2e2761a806ea2c2d5b2d3be95ad368d501a8b2 Author: Alan Garny Date: Sun Nov 15 16:23:37 2015 +0100 New snapshots. commit 12ffc0b6e465989ec6349942cf79e89e5a007912 Author: Alan Garny Date: Sun Nov 15 15:45:27 2015 +0100 Some minor cleaning up [ci skip]. commit dbc62f1f492795982fc65118251788dbbe1b6a90 Merge: a3b17ba18 79a8c98ce Author: Alan Garny Date: Sun Nov 15 14:26:54 2015 +0100 Merge pull request #814 from opencor/issue810 Single Cell view: the ability to create/update a CellML file from some simulation data is now an option (closes #810). commit 79a8c98ce8ccbb947105bc2a417127dbc259dced Author: Alan Garny Date: Sun Nov 15 14:03:21 2015 +0100 Slight update to the user documentation. commit 59b839f35b551e62a198aa16401799f0fca1c913 Author: Alan Garny Date: Sun Nov 15 13:49:31 2015 +0100 Some minor cleaning up [ci skip]. commit 7e1144b4d9af5d5a3b66cbbdbe54440553240e8c Author: Alan Garny Date: Sun Nov 15 13:44:16 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit 56af7d4d84dcebcd97900ac96cfa11168adf2b9b Author: Alan Garny Date: Sun Nov 15 13:40:05 2015 +0100 Some minor cleaning up [ci skip]. commit c637577ec65217ca7bc2cf092c889a0bf0caabbe Author: Alan Garny Date: Sun Nov 15 13:35:16 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit c23745972423954feff3d94050c64b8c4a67d279 Author: Alan Garny Date: Sun Nov 15 12:46:19 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files (#808) [ci skip]. commit f04b477fc1e435c7b8272bbccc34a631c6e45134 Merge: 018f75f91 a3b17ba18 Author: Alan Garny Date: Sat Nov 14 20:07:02 2015 +0100 Merge branch '\''master'\'' into issue810. commit a3b17ba18606277534c28476f1d0fcb06aff5899 Merge: 5c5609b01 cc380fb6c Author: Alan Garny Date: Sat Nov 14 20:03:59 2015 +0100 Merge pull request #813 from opencor/issue805 New file menus are now always available (closes #805)/ commit cc380fb6c2b76c9b0f25dbfa19edccafd6393347 Author: Alan Garny Date: Sat Nov 14 19:36:02 2015 +0100 New file menu should always be available (#805). commit 18f705b1b11cfb6ab9cf4d1e8660894931b56765 Author: Alan Garny Date: Sat Nov 14 09:58:09 2015 +0100 New file menu should always be available (#805) [ci skip]. commit bbcb94254d5ca9748ab1714d5d1c3a0562b2b167 Author: Alan Garny Date: Fri Nov 13 16:58:50 2015 +0100 Some minor cleaning up [ci skip]. commit 6f94a4d8ec48066519eebed1a2188e46bd3bc827 Author: Alan Garny Date: Fri Nov 13 16:46:36 2015 +0100 New file menu should always be available (#805) [ci skip]. commit 018f75f9146c922decfae5e57612c2609f1a1849 Author: Alan Garny Date: Fri Nov 13 15:20:15 2015 +0100 Single Cell view: fixed a problem with file tab icons getting reset [ci skip]. This used to happen when we had several simulations running with a simulation delay of 1,000,000 (i.e. very slow) and then switching from one simulation to another. Every time we would switch to another simulation, the file tab icon of the other simulations would get reset rather than kept as they were… commit 7a6f2d7e8c193fe6b4c38749bcf7d5798efa3f5e Author: Alan Garny Date: Fri Nov 13 14:11:29 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon [ci skip]. commit 3d86f4f6cf4722ebef731d37cd2a522b31fb41f8 Author: Alan Garny Date: Fri Nov 13 14:07:35 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon [ci skip]. commit 328489b5ff60d77cc6779546d1742606b1ad5ae0 Author: Alan Garny Date: Fri Nov 13 14:07:23 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon [ci skip]. commit d2aebbf371be64a42fbe036905f0be2389d12f3b Author: Alan Garny Date: Fri Nov 13 13:58:29 2015 +0100 Some minor cleaning up [ci skip]. commit 03a3f014e43a2ca11095b295fedbe09643f2329e Merge: 0147d208f 5c5609b01 Author: Alan Garny Date: Fri Nov 13 10:19:29 2015 +0100 Merge branch '\''master'\'' into issue810. commit 5c5609b01e1a75b0d9e7c54cdb14ad6c347ff81a Author: Alan Garny Date: Fri Nov 13 10:07:55 2015 +0100 Some minor fix and cleaning up of scripts/genericmake. commit 4ca0b20a90b642a8839ac7e53d7f30db60634ed3 Author: Alan Garny Date: Fri Nov 13 10:06:31 2015 +0100 Some minor fix and cleaning up of scripts/genericmake. commit 0147d208f2c0d5813da394d91eda7d00a00e1319 Merge: d1f23387c 24b80c7be Author: Alan Garny Date: Thu Nov 12 17:53:40 2015 +0100 Merge branch '\''master'\'' into issue810. commit 24b80c7be4f55dc16aa7d5a8a0f5f6cd5555202a Merge: c62779543 f96e96d93 Author: Alan Garny Date: Thu Nov 12 17:51:56 2015 +0100 Merge pull request #811 from opencor/issue808 Single Cell view: only export the relevant simulation data from CellML 1.1 files (closes #808). commit f96e96d93b63c7d3aba5869c52b3a21f2bad5755 Author: Alan Garny Date: Thu Nov 12 17:26:48 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files (#808). commit 25314978e00637b30957e736a2fc4618fb5ce282 Author: Alan Garny Date: Thu Nov 12 17:21:39 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files (#808) [ci skip]. commit 3af60ea79f67ebb1bfb897289255ad0052c98f74 Author: Alan Garny Date: Thu Nov 12 17:18:27 2015 +0100 Some minor cleaning up [ci skip]. commit d1f23387c80f8d6f724eb30d8ba9ffd8a30575b8 Author: Alan Garny Date: Thu Nov 12 16:34:23 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit 4f8863d40a734f1da6d13c77e001f859d616d3e7 Author: Alan Garny Date: Thu Nov 12 16:20:57 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit fa265c2cd32dcbe57ce5c30f62252103ce8db845 Author: Alan Garny Date: Thu Nov 12 14:57:27 2015 +0100 Single Cell view: fixed a problem with commit 5275a1f crashing OpenCOR when a model requires an NLA solver [ci skip]. commit 28d10b55935a7cd7764c6061d73805334a27228f Author: Alan Garny Date: Thu Nov 12 13:41:46 2015 +0100 Single Cell view: fixed a small problem which occurred when having at least one plot and deciding to reload a file. Indeed, doing so would have got the parameters'\'' property editor to flicker. This was because of commit 95e1d73, which although good caused that flicker [ci skip]. commit c05141b8ea7663243bbd9eb2b1c80f64aa4df0cc Merge: 6b5ce0920 c62779543 Author: Alan Garny Date: Thu Nov 12 11:16:14 2015 +0100 Merge branch '\''master'\'' into issue810. commit c62779543925bf6c2ba781d71fc479993c56b94b Author: Alan Garny Date: Thu Nov 12 11:16:00 2015 +0100 Shell scripts: some refactoring that makes it much easier to maintain. commit 748b87df9e3e78175047ff230dfcc410925b2d23 Author: Alan Garny Date: Thu Nov 12 11:03:14 2015 +0100 Some minor cleaning up [ci skip] No need to complicate things for our own scripts… commit 6b5ce09200452b8565e24ebe09c7682f0d9eef9e Merge: 9eb44d7d6 ccd4a6246 Author: Alan Garny Date: Wed Nov 11 19:35:18 2015 +0100 Merge branch '\''master'\'' into issue810. commit ccd4a6246e07083112443f6fecb04357c77a3851 Author: Alan Garny Date: Wed Nov 11 19:34:11 2015 +0100 Batch files: some refactoring that makes it much easier to maintain [ci skip]. commit 9eb44d7d63f25066dc06a1fce138978d25167bd4 Author: Alan Garny Date: Wed Nov 11 17:26:42 2015 +0100 Single Cell view: some minor improvement [ci skip]. commit 89302301c1156cd7bd8b26b8ae342c7cd9dae4e8 Author: Alan Garny Date: Wed Nov 11 17:21:52 2015 +0100 Single Cell view: some minor improvement [ci skip]. commit 2af65191e0c52cad6477c61b98ab52428f75a9bb Author: Alan Garny Date: Wed Nov 11 16:35:14 2015 +0100 Single Cell view: argh, we actually need to let people know that our data has been updated! Indeed, say that you run a simulation and then reset the model parameters. If we don'\''t let people know that our data has been updated, then the parameters'\'' property editor doesn'\''t get updated and we the reset button doesn'\''t get disabled... commit 756d00e01f5bb2049982fda8a24c0577d1caa534 Merge: 5275a1fbf 7a69508e0 Author: Alan Garny Date: Wed Nov 11 16:24:21 2015 +0100 Merge from master. commit 7a69508e07e3bc24f48dbd0f5875a475931267ca Author: Alan Garny Date: Wed Nov 11 16:18:21 2015 +0100 Slight improvements to our Windows building scripts [ci skip]. We automatically retrieve the version of Qt so that we don'\''t have to update the scripts every time we use a different version of Qt. commit 5275a1fbf8265dd47f98e6d987baa9551dd5b5c0 Author: Alan Garny Date: Wed Nov 11 14:51:45 2015 +0100 Single Cell view: make sure that all the parameter values are computed before populating the parameters'\'' property editor [ci skip]. Indeed, without that, we get to see the parameters'\'' property editor with some wrong values, and although it'\''s '\''only'\'' during a split second, it still looks '\''bad'\''. commit e22d884804516f0ad856f328b36e1b48f940dd17 Author: Alan Garny Date: Wed Nov 11 12:23:50 2015 +0100 Some minor improvement [ci skip]. commit 0d582110d72458f8064eee3df5cc5243f0d9147a Author: Alan Garny Date: Tue Nov 10 19:14:12 2015 +0100 The refactoring done in 8bd994c was wrong and can'\''t, in fact, be done [ci skip]. commit 8bd994cc95f59a8279b0c0db55994e64ea3fec49 Author: Alan Garny Date: Tue Nov 10 18:30:12 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit f4a1d0b7cb0888626d9807818318fb07f13f6b84 Author: Alan Garny Date: Tue Nov 10 18:23:12 2015 +0100 Single Cell view: regression: fixed a problem with changing the NLA solver not having an effect on the model parameters anymore [ci skip]. This is similar to 92943a9. commit a44a9138df54191a2b8ccd44911db2ceed306724 Author: Alan Garny Date: Tue Nov 10 18:17:11 2015 +0100 Some minor cleaning up [ci skip]. commit 2949007d1914800f2cf0fa14e1931dcc1300355f Author: Alan Garny Date: Tue Nov 10 17:33:14 2015 +0100 Some minor cleaning up [ci skip]. commit 92943a9e117ff0b5827dcd3d1178fa60f93d8052 Author: Alan Garny Date: Tue Nov 10 17:33:03 2015 +0100 Single Cell view: regression: fixed a problem with changing the starting point not having an effect on the model parameters anymore (e.g. the variable of integration) [ci skip]. commit 34da01d00371f022dbf131d774be0fc4824199a0 Author: Alan Garny Date: Tue Nov 10 17:18:41 2015 +0100 Slight update to the developer documentation [ci skip]. commit c9759685720f01a9512f447e3f4266321f8b6021 Author: Alan Garny Date: Tue Nov 10 15:50:56 2015 +0100 Slight improvement [ci skip]. commit fa68d32727c02f6fbe066e5ff2dbbb36fbe300e6 Author: Alan Garny Date: Tue Nov 10 15:50:41 2015 +0100 Some minor cleaning up [ci skip]. Apparently, we don’t need this anymore (we tried with and without and we get the same results)… commit 3130b0607e2bf7ccf472a2077d7cbaf3bb34808a Author: Alan Garny Date: Tue Nov 10 15:49:27 2015 +0100 Some minor cleaning up and improvement [ci skip]. commit 95e1d7329611f21e6eb341f795b86e2028d3cfbd Author: Alan Garny Date: Tue Nov 10 14:02:22 2015 +0100 Fixed some memory leaks [ci skip]. commit 808c4a46fedf4030bad8c91b0cfe2216d78270c1 Author: Alan Garny Date: Tue Nov 10 11:45:34 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit c47f9a1c057638a29f96c59fca0ed8979011d06e Author: Alan Garny Date: Tue Nov 10 11:02:58 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option (#810) [ci skip]. commit 02923e2d19c18078bba24181beeeb601919929c1 Author: Alan Garny Date: Mon Nov 9 18:56:29 2015 +0100 Travis CI: the build scales fine on Ubuntu, but not on OS X, so reverting to "-j 3". commit 74d7e4006afcbf89a53672fcfc283b50b91a4849 Author: Alan Garny Date: Mon Nov 9 18:34:29 2015 +0100 Travis CI: trying to build using up to 4 concurrent jobs. commit 74dbc6516bc5e0c78acef83c0c205c9ac17e312c Author: Alan Garny Date: Mon Nov 9 18:14:08 2015 +0100 Travis CI: trying to build using up to 5 concurrent jobs. commit 0e75c037fe99f141db6f0fabc740ff4511d6991e Author: Alan Garny Date: Mon Nov 9 18:13:55 2015 +0100 Travis CI: trying to build using up to 4 concurrent jobs. commit f2efc7edaa85e504cf8c9534db983282dd481caf Author: Alan Garny Date: Mon Nov 9 18:13:20 2015 +0100 Travis CI: ninja is definitely a no-go, so back to good old make. Actually, ninja works on Ubuntu using “-j 3”, but not on OS X (even with “-j 3”). commit 21d782fa9256438f19d36f3aa002ddc4a0f16b34 Author: Alan Garny Date: Mon Nov 9 17:58:44 2015 +0100 Travis CI: trying to use ninja (again?) to speed things up. commit 317297be43ddfac690b9bb381e1bce0348c67475 Author: Alan Garny Date: Mon Nov 9 17:53:17 2015 +0100 Travis CI: trying to use ninja (again?) to speed things up. commit 7e6ae06cdd7f555a6a8ba11cac597529754691ef Author: Alan Garny Date: Mon Nov 9 17:37:57 2015 +0100 Travis CI: trying to use ninja (again?) to speed things up. commit 5ed9565116046c3f974090056724306e6640dac0 Author: Alan Garny Date: Mon Nov 9 17:29:34 2015 +0100 Slight update to the user documentation following our work on issue #33 [ci skip]. commit ec3683d8ca4c32491d2e4ea696a49d54dec8d24f Merge: 09f9ce0ce b91c706fc Author: Alan Garny Date: Mon Nov 9 17:24:26 2015 +0100 Merge pull request #809 from opencor/issue33 Single Cell view: can now create a new or update an existing CellML file based on the results of a simulation (closes #33). commit b91c706fc5becc107dbee0cc41991333b435e769 Author: Alan Garny Date: Mon Nov 9 16:58:38 2015 +0100 Some minor cleaning up. commit 76340ac630faf0707e9f9c144189d300a8460ee1 Merge: 575476544 09f9ce0ce Author: Alan Garny Date: Mon Nov 9 16:27:44 2015 +0100 Merge branch '\''master'\'' into issue33. commit 575476544b28f43f53aaeff4d1aa41b4263fd080 Author: Alan Garny Date: Mon Nov 9 16:27:38 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 9a894a015e4a11ef4ef7977e6dcdf4fa47e11f25 Author: Alan Garny Date: Mon Nov 9 16:24:10 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit d9c9d58a583485fc6f64336a8fdf1574ef18cd7c Author: Alan Garny Date: Mon Nov 9 15:42:28 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 8b32e182ff4926668a4271c6ae37ecbcb2d0f2d1 Author: Alan Garny Date: Mon Nov 9 15:23:31 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 09f9ce0ce532cedb777f29ae116e58d13a3aded5 Author: Alan Garny Date: Mon Nov 9 14:39:20 2015 +0100 Some minor cleaning up [ci skip]. commit 169dcf32b90ee0484f61d65164c85476016c24e4 Author: Alan Garny Date: Mon Nov 9 14:30:41 2015 +0100 Some minor cleaning up [ci skip]. commit 09f1ba159cc0e7c78b4dc2dc6d2cfd390994df06 Author: Alan Garny Date: Mon Nov 9 14:06:18 2015 +0100 Some minor cleaning up [ci skip]. commit 03ee6309c32db40ec2f1cb7864177d52147f385c Author: Alan Garny Date: Mon Nov 9 13:53:38 2015 +0100 Some minor cleaning up [ci skip]. commit fb7f1a16460b163cf37653380b91a35bf0544154 Merge: 4ce24428a 4ce3332fe Author: Alan Garny Date: Sun Nov 8 14:24:01 2015 +0100 Merge branch '\''master'\'' into issue33. commit 4ce3332fed67069bd093a6215aeaf81be81c9933 Author: Alan Garny Date: Sun Nov 8 14:17:29 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels (#615). commit c18a130751e96d92c8ee66ce9de16fecad58718b Author: Alan Garny Date: Sun Nov 8 14:00:08 2015 +0100 Some minor cleaning up [ci skip]. commit 65b7ce25952b5cfaf044bcf42d1ecb05d9eb76ca Merge: 0656d9f56 7fb4c6051 Author: Alan Garny Date: Sun Nov 8 13:50:27 2015 +0100 Some minor cleaning up [ci skip]. commit 0656d9f56a7d12dce35d98d6e92b0aa773c03a49 Author: Alan Garny Date: Sun Nov 8 12:36:51 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels (#615). We now seem to be properly handling the addition/removal of graph panels properly. It'\''s just that there is still a bit of flickering in some cases. commit 8d8b16e884e7bf3c8e9349f3e2689336ca016419 Author: Alan Garny Date: Sat Nov 7 15:04:49 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels (#615). We were not handling the addition/removal of graph panels properly. Now, things are better, but still not quite how they should be... commit 7fb4c60513def9fea203afc413725ce04feb8fad Author: Alan Garny Date: Sat Nov 7 15:04:49 2015 +0100 Some minor cleaning up [ci skip]. commit 4ce24428a2c1a22be1ddebb14f144bbdcad402cd Merge: aed259b9c b8b97cc3d Author: Alan Garny Date: Sat Nov 7 14:18:28 2015 +0100 Merge branch '\''master'\'' into issue33. commit b8b97cc3de58b45e4c750427c9c01b0bf5ad19fb Merge: 37ccec28e 301a755ca Author: Alan Garny Date: Sat Nov 7 14:13:37 2015 +0100 Merge pull request #807 from opencor/issue615 Single Cell view: X-axis now always line up when using multiple graph panels (closes #615). commit 301a755ca68a88962197ab879e31754c4826bf62 Author: Alan Garny Date: Sat Nov 7 13:25:11 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615). commit d72478eee96a6dfe7bb161e25d03b91e46d8a997 Author: Alan Garny Date: Fri Nov 6 20:45:14 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit 900a92fd2c3c4a84f059903707b4a9f46602f54c Author: Alan Garny Date: Fri Nov 6 20:33:48 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit 92a39d05945bc948abcde224369ee66af5d0596a Author: Alan Garny Date: Fri Nov 6 18:02:55 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit cc27dfb65ed83a062ae3a8774c9349ecc10c29fb Author: Alan Garny Date: Fri Nov 6 17:47:25 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit 5203a4499f4d653ef817696404c919cd884d019f Author: Alan Garny Date: Fri Nov 6 17:35:17 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit f3dca627cff5ed9bf61665498d70f92eccec8caa Author: Alan Garny Date: Fri Nov 6 17:24:18 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit 48bcb84ae2b17190e735aff42e69a420feca4fb8 Author: Alan Garny Date: Fri Nov 6 17:05:18 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit e78a9b824258008403ad03877da3e35e8b9ca0d5 Author: Alan Garny Date: Fri Nov 6 16:05:06 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels (#615) [ci skip]. commit aed259b9c6c5c063c6939fed2c523d5265129f63 Merge: 39f84b546 37ccec28e Author: Alan Garny Date: Fri Nov 6 15:36:09 2015 +0100 Merge branch '\''master'\'' into issue33. commit 37ccec28eb06d670ea619a489145d30c9c0ad500 Merge: 00fec650b 22b08b18d Author: Alan Garny Date: Fri Nov 6 15:31:08 2015 +0100 Merge pull request #806 from opencor/issue568 Single Cell view: now respect (CellML 1.1) model modularity (closes #568). commit 22b08b18d064a08c7d16a79814c2b2e467c10bff Author: Alan Garny Date: Fri Nov 6 15:06:08 2015 +0100 Single Cell view: some work towards respecting model modularity (#568). commit 44fdeaf1c2dc91fa059e5c75e2a6a253d31cacf3 Author: Alan Garny Date: Fri Nov 6 14:51:05 2015 +0100 Single Cell view: some work towards respecting model modularity (#568) [ci skip]. commit ed5ecd64440acdc5b4fbfa9e851cc55c0a9df5ed Author: Alan Garny Date: Thu Nov 5 13:54:17 2015 +0100 Single Cell view: some work towards respecting model modularity (#568) [ci skip]. commit c116b3374e092ae94a435c8d53f02e3b21c96921 Author: Alan Garny Date: Wed Nov 4 14:48:05 2015 +0100 Single Cell view: some work towards respecting model modularity (#568) [ci skip]. commit 00fec650b8b5f76c7465b891eaa40884bda3e838 Author: Alan Garny Date: Wed Nov 4 14:33:13 2015 +0100 Some minor cleaning up [ci skip]. commit 44e5f7030acdc2502a39b5cb76efd91bf7c4bddd Author: Alan Garny Date: Wed Nov 4 14:22:40 2015 +0100 Some minor cleaning up [ci skip]. commit 96508df3ce6b2cb43fd66cec6ead417e72e35d7d Author: Alan Garny Date: Wed Nov 4 11:54:54 2015 +0100 Slight update to the developer documentation [ci skip]. commit 39f84b54662d7821b75995ea0b3009fed368202d Merge: a75922547 00c42a70a Author: Alan Garny Date: Tue Nov 3 21:37:00 2015 +0100 Merge branch '\''master'\'' into issue33. commit 00c42a70a7e411110582def6dd6cde4a0b088a92 Merge: f626f345d 5c289e443 Author: Alan Garny Date: Tue Nov 3 20:39:49 2015 +0100 Merge pull request #804 from opencor/issue803 Now allow one or several CLI versions of OpenCOR to run along the GUI version (closes #803). commit 5c289e443a96cef1de83dd8d0907b3d304737ef5 Merge: f6b9dac20 f626f345d Author: Alan Garny Date: Tue Nov 3 19:41:32 2015 +0100 Merge branch '\''master'\'' into issue803. commit f626f345dd2782e7d3001bbd5114b09afffec3ef Author: Alan Garny Date: Tue Nov 3 19:41:14 2015 +0100 Travis CI: apparently, make sure that we can download CMake on Linux even if their certificate is not '\''valid'\''. commit f6b9dac200c00024e8d4a7053f1f01aca72cb9ae Author: Alan Garny Date: Tue Nov 3 19:21:59 2015 +0100 Some work on allowing one or several CLI versions of OpenCOR to run along the GUI version (#803). commit b9e82ecbe5bf935bb67ea5f4150b3f8d0278cf40 Author: Alan Garny Date: Tue Nov 3 18:58:47 2015 +0100 Some minor cleaning up [ci skip]. Simplified our use of QString::toUtf8(). commit ac531f7b90ed71533b6cf7e8603d224efd590064 Author: Alan Garny Date: Mon Nov 2 19:54:17 2015 +0100 Some minor cleaning up [ci skip]. Well, the previous commit made things slightly worse on Windows and Linux (the organisation name is actually needed on both), so going back to what we used to have initially… and thus not breaking the settings with previous versions of OpenCOR… commit a8128d52dd1235cffe3e42c9639125f646d92621 Author: Alan Garny Date: Mon Nov 2 19:46:08 2015 +0100 Some minor cleaning up [ci skip]. commit 5f4156d6501ddb3422b162a803840aac99c3ff43 Author: Alan Garny Date: Mon Nov 2 19:43:14 2015 +0100 Some minor cleaning up [ci skip]. commit 8619aa415aee363cac642b9fd5f010a2c3b25876 Author: Alan Garny Date: Mon Nov 2 19:40:34 2015 +0100 Some minor cleaning up [ci skip]. commit 409aed9659ef39b26769413adbe4ecf05cdc898a Author: Alan Garny Date: Mon Nov 2 19:30:05 2015 +0100 Some minor cleaning up [ci skip]. commit 6945248eaf468f921829e480789266085edc448d Author: Alan Garny Date: Mon Nov 2 18:43:02 2015 +0100 Some minor cleaning up [ci skip]. commit d2481cf744fda0aeceb350d181f63fe5c6e52c17 Author: Alan Garny Date: Mon Nov 2 17:52:13 2015 +0100 Some work on allowing one or several CLI versions of OpenCOR to run along the GUI version (#803) [ci skip]. commit a1849c72a1cd9256f51dac1077e7e7eccd95026c Author: Alan Garny Date: Mon Nov 2 16:34:35 2015 +0100 Some minor cleaning up [ci skip]. commit 454cbc5ee4000d931f2da1ccfc9c92170c30f057 Author: Alan Garny Date: Mon Nov 2 11:19:18 2015 +0100 Travis CI: apparently, we Homebrew now silences curl, so testing... commit f1404d25a7c93c004256aa9c661b4d7236d05d66 Author: Alan Garny Date: Fri Oct 30 11:23:16 2015 +0100 Cleaned up our use of the application object [ci skip]. As soon as we create an application object, we can refer to it using qApp, so now we do that wherever possible. commit b8fcaa6eb587e68c468b1817a29f38228885922a Author: Alan Garny Date: Fri Oct 30 11:01:59 2015 +0100 Some minor cleaning up [ci skip]. commit 6625e775ff9216f0e8506d4fbeebcd89194a52cf Author: Alan Garny Date: Fri Oct 30 10:28:05 2015 +0100 Cleaned up the code that describes the application and gives its build information [ci skip]. commit d9c3bab9cddf09d5eea6a965845f28de8fccff97 Author: Alan Garny Date: Fri Oct 30 10:25:48 2015 +0100 Cleaned up the code that describes the application and gives its build information [ci skip]. commit f52cfcc05cecdfc8bb4b45d9ffe40665c6e79c8d Author: Alan Garny Date: Thu Oct 29 20:04:25 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale [ci skip]. commit a097ef6f09324671188d1e0ad9871cd99a45a3e3 Author: Alan Garny Date: Thu Oct 29 19:28:14 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale [ci skip]. commit 7c1ea3978c132ba1cdd27d4ccfb9de781d3a72aa Author: Alan Garny Date: Thu Oct 29 19:10:56 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale [ci skip]. commit 6bd36ef5816964eb2b9101aeb1bb6cd504a9aee0 Author: Alan Garny Date: Thu Oct 29 18:39:03 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale [ci skip]. commit f06f48b47f6c5427ec6e1ebb541b7e7eaa021dcd Author: Alan Garny Date: Thu Oct 29 18:23:04 2015 +0100 Simplified our setting/retrieval of the active directory. Some additional minor cleaning up too [ci skip]. commit 19cd5610d2a6fead353a856eb8a6e929f27a8715 Author: Alan Garny Date: Thu Oct 29 17:01:19 2015 +0100 Slight changes to the About box [ci skip]. commit dca391515d43df1aba5cfc594056a94ce691a1af Author: Alan Garny Date: Thu Oct 29 16:49:13 2015 +0100 Slight changes to the CLI version of the About '\''box'\'' [ci skip]. commit 1d8ec627fe94f5ef081ba4b442f78d2f20f0d96e Author: Alan Garny Date: Thu Oct 29 16:45:43 2015 +0100 Slight changes to the About box [ci skip]. commit 402ad9a7a0e54e445304fd15fdadab9ef20460ed Author: Alan Garny Date: Thu Oct 29 16:40:51 2015 +0100 Slight changes to the About box [ci skip]. commit 7801d4f59e6c5f3b63c5ac18786c10bb6cd45717 Author: Alan Garny Date: Wed Oct 28 20:46:31 2015 +0100 Some minor cleaning up [ci skip]. commit 30d126e3ee584cee01e926de93cbc32d91e26cf9 Author: Alan Garny Date: Wed Oct 28 15:58:14 2015 +0100 SBML API: enable/disable a warning on Windows [ci skip]. This is required to get things to work using Qt 5.5 (although we don’t yet want to use that version of Qt since it’s causing us problems on OS X). commit 7f68aa0c8fef2321bd30a252b7b2893d182051af Author: Alan Garny Date: Wed Oct 28 15:50:34 2015 +0100 SBML API: enable/disable a warning on Windows [ci skip]. This is required to get things to work using Qt 5.5 (although we don’t yet want to use that version of Qt since it’s causing us problems on OS X). commit e08388116966261d4d91db5cab95ab0cc5d4f880 Author: Alan Garny Date: Wed Oct 28 14:55:59 2015 +0100 Some minor cleaning up [ci skip]. commit 32d75bc00d32e2f405dad45530df91d9782e7290 Author: Alan Garny Date: Wed Oct 28 11:28:10 2015 +0100 CellML support: removed the comments generated by the CellML API [ci skip]. This makes it easier to read the code when we need/want to check the code generated by the CellML API… commit a75922547520d7163d6e2b2abe1a17a7582083ff Merge: 850b0373b e2109c30d Author: Alan Garny Date: Wed Oct 28 10:16:24 2015 +0100 Merge branch '\''master'\'' into issue33. commit e2109c30defb36727aed3a5aae12529714a57be6 Merge: 83e03b234 594173f66 Author: Alan Garny Date: Wed Oct 28 10:14:44 2015 +0100 Merge pull request #802 from opencor/issue790 CellML Text view: added support for gcd(a, b, ...) and lcm(a, b, ...) (closes #790). commit 594173f66098da3c2ec0694e369622b835c232a4 Author: Alan Garny Date: Wed Oct 28 09:46:11 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790). commit 9b927b5485ad8c94f2fab70851a7ae2ce11998a9 Author: Alan Garny Date: Wed Oct 28 09:33:20 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit 38726d3e7ad9e99064de3f3241bfec8516b94b37 Author: Alan Garny Date: Tue Oct 27 19:46:29 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit e1bdb24a095d5bb75a3da606f8cf1464b87bd7d0 Author: Alan Garny Date: Tue Oct 27 19:45:38 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit 46145f77e1a744f16752c455577ac5cfbbe8a96f Author: Alan Garny Date: Tue Oct 27 19:30:39 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit 9b1b4b225fb85f9092da1ff9051dfaf8f5e5a6bf Author: Alan Garny Date: Tue Oct 27 19:25:12 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit e585cb6b3d2c373baf963ed986615a8971f79474 Author: Alan Garny Date: Tue Oct 27 19:13:26 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit b6217c06ee56fd330c49f009e41aee19b8fe6279 Author: Alan Garny Date: Tue Oct 27 19:11:58 2015 +0100 CellML Text view: some work on adding support for gcd(a, b, ...) and lcm(a, b, ...) (#790) [ci skip]. commit 83e03b234833c041ee82e373a7cd47c704c2645c Merge: 060b8b4c4 7568db025 Author: Alan Garny Date: Tue Oct 27 17:34:12 2015 +0100 Merge pull request #801 from opencor/issue789 CellML Text view: added support for min(a, b, ...) and max(a, b, ...) (closes #789). commit 7568db025fd0894327e6fbfdecfdec4fb901834d Author: Alan Garny Date: Tue Oct 27 17:06:51 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789). commit 511d8fdd574af301bf220deb12bfa744a65a8fb4 Author: Alan Garny Date: Tue Oct 27 16:47:58 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 012481908a51ad07c43f25ff139c541b13159f83 Author: Alan Garny Date: Tue Oct 27 16:36:59 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit d6e9e222dca82b192a8c37022a45b8ef7562f18b Author: Alan Garny Date: Tue Oct 27 16:34:29 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit c0ac552fd36ccf6966344e9927c3c33b36e8a706 Author: Alan Garny Date: Tue Oct 27 16:26:00 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 74545f8dc61d73baee3df15c7f2338e632ef5ada Author: Alan Garny Date: Tue Oct 27 16:09:39 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 861a436d006f4a96a43cbfd000bcbe525494e2d4 Author: Alan Garny Date: Tue Oct 27 15:22:59 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 24d7d7d8cb50c12506b54ae14f868488c6ea106d Author: Alan Garny Date: Tue Oct 27 15:16:08 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 4ec235641dd55953d3fd3298826bd7a28dfc3fb8 Author: Alan Garny Date: Tue Oct 27 15:12:35 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit f068a0f68b9873a116731c84546e682613c921e1 Author: Alan Garny Date: Tue Oct 27 11:38:50 2015 +0100 CellML Text view: some work on adding support for min(a, b, ...) and max(a, b, ...) (#789) [ci skip]. commit 060b8b4c49088e6fed7933de4ed21869c45a57ab Author: Alan Garny Date: Tue Oct 27 11:31:36 2015 +0100 Added proper support for some trigonometric operators. On http://opencor.ws/user/plugins/editing/CellMLTextView.html, we list the [a]sec[h](), [a]csc[h]() and [a]cot[h]() functions as being available, but although we can make use of them in the CellML editors, we can’t actually use them in the Single Cell view. commit 5aaf3f61b492b330a81dce1d2d36bbd7e8d55ae6 Author: Alan Garny Date: Tue Oct 27 11:17:49 2015 +0100 Some minor cleaning up [ci skip]. commit fa089a7e28c1f6ff2dc85d4c8ce33874a2420637 Author: Alan Garny Date: Tue Oct 27 10:58:27 2015 +0100 Some minor cleaning up [ci skip]. commit 850b0373be56c4818d9fa7d2e8ed64ddde7b4e86 Merge: 668a8b9b3 05c490f20 Author: Alan Garny Date: Mon Oct 26 19:23:05 2015 +0100 Merge branch '\''master'\'' into issue33. commit 05c490f20d3c7e4ee2fa63f1a03b4e13ff3d8cb4 Merge: 6aa808d36 48fb87dbd Author: Alan Garny Date: Mon Oct 26 19:22:42 2015 +0100 Merge pull request #800 from opencor/issue797 Viewer widget: greatly improved the rendering of various operators (closes #797). commit 48fb87dbd7e1b83107bab4ad691574c98c95a1f2 Author: Alan Garny Date: Mon Oct 26 18:57:32 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797). commit b1467d4fb188a363a643b154ee3823721880dc3f Author: Alan Garny Date: Mon Oct 26 18:45:13 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 142b372d9e46afe2c052d911e8ac59c27588de91 Author: Alan Garny Date: Mon Oct 26 18:43:18 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 7387a9ce1deef79edb188c118192920b6b176d27 Author: Alan Garny Date: Mon Oct 26 18:31:12 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797). commit 3e98494751fe2dc67e95d3d4d0faf821ae4171cb Author: Alan Garny Date: Mon Oct 26 18:23:25 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797). commit fad11910f3ed7d79cd0f11616e0bd68232a18e58 Author: Alan Garny Date: Mon Oct 26 17:41:33 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797). commit 5e419e31ae88fb0a0fd50c52263b785f761c4773 Author: Alan Garny Date: Mon Oct 26 16:05:12 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797). commit ff29fb3dae6b30a30b4906111016b0f273f26254 Author: Alan Garny Date: Mon Oct 26 14:01:38 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit f4729c8042724dbe6abc63bbf7ab8acb330123a5 Author: Alan Garny Date: Mon Oct 26 14:01:29 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit e9f8efb9659b9216e95e7ecddade9bdea755313a Author: Alan Garny Date: Mon Oct 26 13:19:37 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit bafc783681edea8b3adfc7b2188a1a00ff404e8b Author: Alan Garny Date: Mon Oct 26 13:19:30 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 50a925c9642b7d2cf45dcb9984165bdf713cc57b Author: Alan Garny Date: Mon Oct 26 13:13:26 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 3bb62ff372ea57aeeb456b8c7d755256bf0f206a Author: Alan Garny Date: Mon Oct 26 13:13:14 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 7db5a745af3f3a527665aff55b6de974c23b085d Author: Alan Garny Date: Mon Oct 26 11:58:39 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 8cab6fb32b03e534feae97c790652dd917d2d235 Author: Alan Garny Date: Mon Oct 26 10:00:56 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit c889da577a1753cd10e3cffa81c387f55f45c723 Author: Alan Garny Date: Mon Oct 26 09:51:43 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 485ec9de9dd0250d241d6d17b48acac169a8e8f0 Author: Alan Garny Date: Mon Oct 26 09:42:40 2015 +0100 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 6aa808d36fba05e18e58e82d17aae29abdddaf58 Author: Alan Garny Date: Sun Oct 25 10:27:25 2015 +0100 Border colour: changed the way we '\''retrieve'\'' the border colour since it caused problems on Windows 10 [ci skip]. commit 70523419e0a0f449ad52a7c44f06d77556883eb1 Author: Alan Garny Date: Sun Oct 25 10:04:19 2015 +0100 Border colour: changed the way we '\''retrieve'\'' the border colour since it caused problems on Windows 10 [ci skip]. commit 84eebc3d47229be663380a6e90c26684a9a92053 Merge: 69bb301df 538e94a72 Author: Alan Garny Date: Sat Oct 24 19:54:50 2015 +0200 Merge branch '\''master'\'' into issue797 [ci skip]. commit 668a8b9b31ea7f91f62a548c146bf94903a0b652 Merge: 0e2c52b45 538e94a72 Author: Alan Garny Date: Sat Oct 24 19:53:58 2015 +0200 Merge branch '\''master'\'' into issue33 [ci skip]. commit 538e94a720a9b78a442a351c098ccc7a400fde40 Merge: cc0416d41 5a4180529 Author: Alan Garny Date: Sat Oct 24 19:50:22 2015 +0200 Merge pull request #799 from opencor/issue798 QScintilla: upgraded to version 2.9.1 (closes #798). commit 5a418052995e75d2df1385274b5fa8dcaad6da69 Author: Alan Garny Date: Sat Oct 24 19:26:39 2015 +0200 QScintilla: some work on upgrading to version 2.9.1 (#798). commit 76f454de13baeffdbf8c5b2a1ebc9cab284a4f3c Author: Alan Garny Date: Sat Oct 24 19:04:07 2015 +0200 QScintilla: some work on upgrading to version 2.9.1 (#798) [ci skip]. commit cc0416d4152ac197b159938304bd139e4816e27f Author: Alan Garny Date: Fri Oct 23 21:36:59 2015 +0200 Some minor cleaning up [ci skip]. commit 69bb301dfd5fe562827e2efda62b2386d6ba5606 Author: Alan Garny Date: Fri Oct 23 18:07:03 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 4de7183bd755d9636798ca032efb054f6e53d38d Author: Alan Garny Date: Fri Oct 23 17:47:53 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit e426734b75880f1d225c37453565a99cad21b18f Author: Alan Garny Date: Fri Oct 23 17:47:00 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit d5e2a5cacd4906702a0c3a972ac52887a711790a Author: Alan Garny Date: Fri Oct 23 17:43:47 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit f28a38623dea115cde87da137783a56d1d6c4b3e Author: Alan Garny Date: Fri Oct 23 17:34:42 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit b052fade53ac97826b2ec314dee12af2bbd071cc Author: Alan Garny Date: Fri Oct 23 16:49:27 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 1066fc5c266fc209bed28bdb019e4a7967a68226 Author: Alan Garny Date: Fri Oct 23 16:45:44 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 9c3a2ed53672c2e8822686fa640dfb4bf7d20e6a Author: Alan Garny Date: Fri Oct 23 14:50:50 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit dd64feff27125606b2dfc3af905e5d20e8e9543e Author: Alan Garny Date: Fri Oct 23 14:50:14 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 834a3dbfdeb135ad634a20289ce023d4e746b156 Author: Alan Garny Date: Fri Oct 23 14:42:03 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit d42924459643fb6e2dcb40efa9123f053b72a783 Author: Alan Garny Date: Fri Oct 23 14:29:33 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 7cef098c249d597ab3b3c398b021340377993662 Author: Alan Garny Date: Fri Oct 23 13:34:31 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit e92f065da8e111ec8962ffafdca54674c1c5c7fd Author: Alan Garny Date: Fri Oct 23 13:31:02 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit d080897f6b3043088cf513dc9dc4b76fa0fc185e Author: Alan Garny Date: Fri Oct 23 13:09:00 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 7b072db178bcfbe33aeecd01d1a98f3ad3392fdd Author: Alan Garny Date: Fri Oct 23 10:56:06 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit f8e9bd966d162e432809931c81965cb8b71ff7f5 Author: Alan Garny Date: Fri Oct 23 10:05:29 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 22cc7e86ca8c312a7402a54b067ba37827945c9a Author: Alan Garny Date: Fri Oct 23 09:37:07 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 7ffa01f247aa25b07cc711a4e4426ede5d513863 Author: Alan Garny Date: Thu Oct 22 19:43:35 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit e947094757c91545a783c3a10cc32fac298f6f96 Author: Alan Garny Date: Thu Oct 22 19:36:18 2015 +0200 Viewer widget: some work on improving the rendering of various operators (#797) [ci skip]. commit 5253ffd0cc9fbe8b7f1c9c625ef3ea788db29ba9 Author: Alan Garny Date: Thu Oct 22 19:14:15 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit 06a0a15134a04a5b57b85f0303ab368bf485b3cc Author: Alan Garny Date: Thu Oct 22 18:36:08 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit cd40ece760dd0e5cbbeee2b6b36e173f3a1a4e63 Author: Alan Garny Date: Thu Oct 22 18:29:41 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit b498b9d958d0dfd04ecb97c11cac1d23d6ba05c5 Author: Alan Garny Date: Thu Oct 22 18:21:33 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit 34e50a3e6077bf65816d39a7c26c857a80845c97 Author: Alan Garny Date: Thu Oct 22 18:18:54 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit 04ef558bef3709efa4914260275798135966b0b5 Author: Alan Garny Date: Thu Oct 22 18:16:48 2015 +0200 Viewer widget: some work on improving the rendering of the pow(), root() and log() functions (#797) [ci skip]. commit 38abf9ba4a62393d58bf1a2d40bb299fbe5a2367 Author: Alan Garny Date: Thu Oct 22 17:49:41 2015 +0200 CellML Text view: added some additional parsing tests for the pow(), root() and rem() function. commit f5d63d3af45e0ef8c441eb2436c2e49d80092f89 Author: Alan Garny Date: Thu Oct 22 17:48:47 2015 +0200 Slight update to the user documentation [ci skip]. commit db8e388097c0e24bfb739a5e9da07ad3ebd11fca Author: Alan Garny Date: Thu Oct 22 17:40:17 2015 +0200 Some minor cleaning up [ci skip]. commit e45bcf59bcfcbd4adab523413708e84c51460479 Author: Alan Garny Date: Thu Oct 22 17:38:54 2015 +0200 Some minor cleaning up [ci skip]. commit fbd1516d18435bd6c5c8d6a0a0ccc3ddf288196c Author: Alan Garny Date: Thu Oct 22 14:16:10 2015 +0200 Slight update to the developer documentation [ci skip]. commit b68592fe876ff12ecd081cca43176fcd0fa917ae Author: Alan Garny Date: Thu Oct 22 13:17:28 2015 +0200 CellML: improved the support for arbitrary logarithm (closes #791). commit 3f174502a04a45f849d41ac9ba9bce8d974db62d Author: Alan Garny Date: Thu Oct 22 13:04:52 2015 +0200 Slight update to the developer documentation [ci skip]. commit 0e2c52b450c2888d757390266f25eefc6f334003 Author: Alan Garny Date: Wed Oct 21 18:02:39 2015 +0200 Some minor cleaning up [ci skip]. commit 51d116824af83c30c9bec22e7852c9b5f7df0eda Merge: b0672bf4e fca3d4fe2 Author: Alan Garny Date: Wed Oct 21 17:04:26 2015 +0200 Merge branch '\''master'\'' into issue33. commit fca3d4fe277b9121e9cbc688fa7f526732b5f7fe Merge: 1b8a6e6fc 37c5f4704 Author: Alan Garny Date: Wed Oct 21 17:01:40 2015 +0200 Merge pull request #796 from opencor/issue795 Viewer widget: improved the rendering of unary minus (closes #795). commit 37c5f47041dc916b540489f65acee0dab85234ef Author: Alan Garny Date: Wed Oct 21 16:22:44 2015 +0200 Viewer widget: improve the rendering of unary minus (#795). commit f64e03a5fbb9bb5b393ce5c9c323cadeaeb4645a Author: Alan Garny Date: Wed Oct 21 16:21:29 2015 +0200 Viewer widget: improve the rendering of unary minus (#795). commit b0ff3c92ebf036ed9f06a04fa4d0c3dc86981a5c Author: Alan Garny Date: Wed Oct 21 16:07:21 2015 +0200 Viewer widget: improve the rendering of unary minus (#795) [ci skip]. commit b0672bf4edb406c06aafd0c804c6efd21bf04eda Author: Alan Garny Date: Wed Oct 21 13:50:53 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 9b151394d5470d4746ba32d80e0ed1a43c9d97aa Merge: 7777b7e3d 1b8a6e6fc Author: Alan Garny Date: Wed Oct 21 13:19:32 2015 +0200 Merge branch '\''master'\'' into issue33. commit 1b8a6e6fc561a191b913554bad0189f9aabd2888 Merge: e582778e3 be803b1bc Author: Alan Garny Date: Wed Oct 21 13:04:14 2015 +0200 Merge pull request #794 from opencor/issue793 Content to Presentation MathML conversion: improved the merging of mrow elements (closes #793). commit be803b1bc29659d53752e9aacbc3afe81e6cda2a Author: Alan Garny Date: Wed Oct 21 11:42:43 2015 +0200 Content to Presentation MathML conversion: improved the merging of mrow elements (#793). commit e582778e3e6f8bf72ec31ff948fc61ff96583352 Author: Alan Garny Date: Tue Oct 20 19:53:54 2015 +0200 Some minor cleaning up [ci skip]. Windows apparently needs WebKit to be specified, not to mention that the CLI version of OpenCOR (on Windows) we need to link to the Network module (rather than the Xml and XmlPatterns ones). commit ad78ad6be6d5ebf638bf21e2843a699326dddee0 Author: Alan Garny Date: Tue Oct 20 19:25:31 2015 +0200 Some minor cleaning up [ci skip]. commit 5acb9c0e47cad6c13dab2d776edd1c1276a7d5e7 Merge: 18f1772f8 999e471fd Author: Alan Garny Date: Tue Oct 20 18:57:12 2015 +0200 Merge pull request #792 from opencor/issue785 Content to Presentation MathML conversion: added some tests (closes #785). commit 999e471fd70c4bcdb2c58ead5cb69cf5d0350d4f Author: Alan Garny Date: Tue Oct 20 18:32:09 2015 +0200 Don'\''t rely on D-Bus anymore. Indeed, Homebrew ships Qt 5.5.1 without D-Bus support anymore (by default at least) and as it happens OpenCOR doesn’t need D-Bus (anymore?), so… commit c0b9a64cde4da367b45dda821e63c9633e7621b1 Merge: 7d2f2435c 18f1772f8 Author: Alan Garny Date: Tue Oct 20 17:51:14 2015 +0200 Merge branch '\''master'\'' into issue785. commit 7d2f2435c29234a904b6111337ca0793dcbb7267 Author: Alan Garny Date: Tue Oct 20 17:50:53 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 6d3f6ab0b6bde2e6b2f2d5a1650f00a21e05c9e7 Author: Alan Garny Date: Tue Oct 20 17:49:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 6246fabf43d367da79fa2e645fbceaf7a9ba2c11 Author: Alan Garny Date: Tue Oct 20 17:26:06 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. This effectively addresses issue #784 (among other things). commit aa5d0a93251e3beb04e5cfea5e66d5ac7b971bfe Author: Alan Garny Date: Tue Oct 20 14:37:28 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit a515936f51b2276642d6cce4694db82adaef0a0e Author: Alan Garny Date: Tue Oct 20 14:14:13 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 51de3aaa01cc4b676766bd94640b6d922c728e1b Author: Alan Garny Date: Tue Oct 20 14:06:05 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 4d57761ca971991b30e77beb68b292d05de10656 Author: Alan Garny Date: Tue Oct 20 14:03:45 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit bd15abd261d8ab6250dceb296da285d5f55fc511 Author: Alan Garny Date: Tue Oct 20 13:48:43 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit a95da731ea7ac59ecbad4d4ddd5ad5d1897de858 Author: Alan Garny Date: Tue Oct 20 13:34:08 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 39cb4ff892ce4f994db0e28f2d89b0d35f86b551 Author: Alan Garny Date: Tue Oct 20 11:30:48 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 6d621e5b7bbd0e452d3ab5aab07253b3ae50e437 Author: Alan Garny Date: Tue Oct 20 11:26:19 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit fc4ec27fe25e0af9729ee9f75afcf2e521616f25 Author: Alan Garny Date: Tue Oct 20 11:21:38 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit ccf929c00fd03b131b7126f31a37afecbeef403d Author: Alan Garny Date: Tue Oct 20 11:16:21 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit f09b1c9b6d5d750e22c2d859d157cd59d9793c3c Author: Alan Garny Date: Tue Oct 20 11:03:20 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 62d4b6d70117f704a59a79763101655087b9c4b7 Author: Alan Garny Date: Tue Oct 20 10:53:56 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 4fb35b24eb7ae0201ef1c97c1f6c1465868f6b93 Author: Alan Garny Date: Tue Oct 20 10:31:40 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit bd37f3d29ba603a78b1e2feb95d0e937943231cf Author: Alan Garny Date: Tue Oct 20 10:26:16 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit ff93c0a000a97c2e262d6f61d3fe1e9d6e86aad4 Author: Alan Garny Date: Tue Oct 20 10:20:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 9ede544f983267dac80461d7039b6ed5ebc08c0a Author: Alan Garny Date: Tue Oct 20 10:07:46 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit df1d8197224c366ce43ad329a200ea9ca3abb40c Author: Alan Garny Date: Mon Oct 19 20:10:18 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 7f74804f173906ed800069d52b2f96469061da44 Author: Alan Garny Date: Mon Oct 19 19:46:28 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit dff4ed38ff8f8105840a0af637159f08ff51f63b Author: Alan Garny Date: Mon Oct 19 19:45:55 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 5e7c6e54edb8a5476f29c3cc399ff21dd8258a9d Author: Alan Garny Date: Mon Oct 19 17:35:27 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 63212548560b405056f1f9c19b2cfa153a3088a0 Author: Alan Garny Date: Mon Oct 19 16:33:51 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit ee9c8ca68f7cd4ea56b328d8b441e9285a3deb88 Author: Alan Garny Date: Mon Oct 19 15:54:14 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit e92fe39e375a28d37ad8ae614ff1885031b4205a Author: Alan Garny Date: Mon Oct 19 14:58:55 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 661c7c25a5a5ca279a1c3e56bb0c8afce59ef819 Author: Alan Garny Date: Mon Oct 19 14:58:01 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 94f081e5da9b632d354a930e3a4e502c0cb9e52f Author: Alan Garny Date: Mon Oct 19 14:42:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 18f1772f89152c7e71ab9031e97da90607512af9 Author: Alan Garny Date: Sat Oct 17 16:16:13 2015 +0200 Windows 10: make sure that the main window makes use of the screen estate (closes #788). commit fc019d51f89a38a3b53ab442978f896f20ed52d3 Author: Alan Garny Date: Fri Oct 16 17:07:57 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 [ci skip]. Some tests for the plus operator. Note, however, that some outputs are not quite right, e.g. plus05 (it contains some divide elements). commit 776997f13068b88bb129b0af36f2d3a90f39cd0f Author: Alan Garny Date: Fri Oct 16 16:36:11 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 [ci skip]. commit 12d2f40d655d40b372eed7641475b7cefe00ad5d Author: Alan Garny Date: Fri Oct 16 14:06:38 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 [ci skip]. commit 11abd84ad90cd9171115abe678286a6060a0bdb4 Author: Alan Garny Date: Fri Oct 16 13:39:48 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 [ci skip]. commit dbe834bfe49a079f4061ecb8b245d01f6066debf Author: Alan Garny Date: Thu Oct 15 13:41:58 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 0ce8370873c428052ad88effedbda49f1ab6ab59 Author: Alan Garny Date: Thu Oct 15 13:14:13 2015 +0200 Some minor cleaning up [ci skip]. commit 8142d63f03d672398a4af8bca5bbdcca49d0ecbb Merge: a60628aff ff90bfe0f Author: Alan Garny Date: Wed Oct 14 19:41:53 2015 +0200 Merge branch '\''master'\'' into issue785. commit ff90bfe0f4335e638ace24f50c499f749d03d861 Author: Alan Garny Date: Wed Oct 14 19:34:51 2015 +0200 Some minor refactoring [ci skip]. commit a60628aff09659e0da4f166dca649b68e4c1c05b Author: Alan Garny Date: Wed Oct 14 19:24:10 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests (#785) [ci skip]. commit 468c9559f53c6783be100c27f65b3a8cf7e1f89d Author: Alan Garny Date: Wed Oct 14 18:54:28 2015 +0200 Editor widget: highlight matching braces (closes #786). commit 8b7443d29ea4545ef08e0a32570f9cfc9b63f3ec Merge: ab9c3a768 5515188fc Author: Alan Garny Date: Wed Oct 14 17:16:02 2015 +0200 Merge pull request #783 from opencor/issue782 Viewer widget: better render superscripts and subscripts (closes #782). commit 5515188fcb659515f80f37ede68671ce91433704 Author: Alan Garny Date: Wed Oct 14 16:50:58 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts (#782). commit 51f5d59dfb410c85002b92f44d4ed854a1912dcb Author: Alan Garny Date: Wed Oct 14 15:31:22 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts (#782). commit 33026d402c952d16d8a2f9ebd2fefa1958bb23dc Author: Alan Garny Date: Wed Oct 14 15:10:57 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts (#782) [ci skip]. commit 7f2a712ac46e17a408bea63fd64e19d4330cfd38 Author: Alan Garny Date: Wed Oct 14 15:02:50 2015 +0200 Merge branch '\''master'\'' into issue782. commit 32a8173838d5ebec55be1f2d9ee86089a6ac358b Author: Alan Garny Date: Wed Oct 14 15:01:31 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts (#782) [ci skip]. commit ab9c3a768ee20d3b4061dbf4147af95dc94666aa Author: Alan Garny Date: Wed Oct 14 14:57:32 2015 +0200 Qwt: some minor cleaning up of the MathML renderer [ci skip]. commit 30b1e228a56942c9d7c127d8c182f7719143b243 Author: Alan Garny Date: Wed Oct 14 10:24:20 2015 +0200 Qwt: some minor cleaning up of the MathML renderer [ci skip]. commit a11593934402c001833783176d3b660436d390fb Author: Alan Garny Date: Mon Oct 12 19:15:55 2015 +0200 Slight update to the user documentation [ci skip]. commit c67a1707ca46540a234dbd239a7c7a0e3e571e86 Merge: 3c0c419b3 9c188367d Author: Alan Garny Date: Mon Oct 12 18:53:26 2015 +0200 Merge pull request #781 from opencor/issue780 libgit2: upgraded to version 0.23.3 (closes #780). commit 9c188367d821adb638ccc71b9b79cba8aa268d75 Author: Alan Garny Date: Mon Oct 12 18:29:59 2015 +0200 libgit2: upgraded to version 0.23.3 (#780). commit 72d3738c490525ba887e433d4152e66efc1e15a4 Author: Alan Garny Date: Mon Oct 12 17:49:23 2015 +0200 libgit2: some work on upgrading to version 0.23.3 (#780) [ci skip]. commit 3c0c419b342ff8521cb6474fc10d928a420e92a6 Author: Alan Garny Date: Mon Oct 12 16:43:52 2015 +0200 Some slight updates to the developer documentation [ci skip]. commit 7777b7e3d6f8345642638e8b0d2d9b85a0f88acc Merge: 4187c7b57 80f7aa22e Author: Alan Garny Date: Fri Oct 9 15:49:34 2015 +0200 Merge branch '\''master'\'' into issue33. commit 80f7aa22ec92d86a07fc7aa3683611e9c18e5a61 Author: Alan Garny Date: Fri Oct 9 15:49:19 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue. commit 4187c7b57688f7213874ba050c9949a9ce85214a Merge: 5164ce6d7 437263cf7 Author: Alan Garny Date: Fri Oct 9 14:43:13 2015 +0200 Merge branch '\''master'\'' into issue33. commit 437263cf788d7b2caed28ec113448b2bf71d3c41 Author: Alan Garny Date: Fri Oct 9 14:42:02 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue. commit ae835678b0c317229f85e8c1eb357da785dcd819 Author: Alan Garny Date: Fri Oct 9 14:05:40 2015 +0200 Some minor cleaning up. Not sure why it was (still?) there, but we don’t need access to the plugin manager within a test, so removed it, thus making it ‘easier’ to build OpenCOR. commit e2d62e4526152b5abb91162e9d99a69a07939d16 Author: Alan Garny Date: Fri Oct 9 13:40:21 2015 +0200 Some minor cleaning up. Make use of [Core::]nativeCanonicalFileName() and [Core::]nativeCanonicalDirName() wherever possible. commit 6a289b69c12ff8da1da60d9aa8762b57da7a3e6a Author: Alan Garny Date: Thu Oct 8 18:10:58 2015 +0200 Some minor cleaning up [ci skip]. commit cbe260ee979023754b9c1d75e30d372319471ff5 Author: Alan Garny Date: Thu Oct 8 17:05:07 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue [ci skip]. commit 9e985377e60587e38053157f01a0a99a0f677b38 Author: Alan Garny Date: Thu Oct 8 17:04:44 2015 +0200 Some minor cleaning up [ci skip]. commit 5164ce6d703786046e91133a29f0fa3499aeea3d Author: Alan Garny Date: Thu Oct 8 16:20:08 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit a6d7e8cb87a51192ed0e6469ec2ded29cdd42f1e Author: Alan Garny Date: Thu Oct 8 16:16:01 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 1f826b70916bed4fa34a3328f51c32176a442148 Author: Alan Garny Date: Thu Oct 8 14:44:36 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit f390eaf35d335d6295ce64ebad47c0291ed792cb Merge: 677a9502e 097ce69ba Author: Alan Garny Date: Thu Oct 8 11:20:39 2015 +0200 Merge branch '\''master'\'' into issue33. commit 097ce69baa07d89366608addd1228642248306e9 Author: Alan Garny Date: Thu Oct 8 11:19:26 2015 +0200 Rely on Qt itself to determine the OS name [ci skip]. Things have apparently improved (or had I never noticed the QSysInfo::prettyProductName() function before?!) and it allows to ‘determine’ the version of an OS that is not yet officially supported by Qt (e.g. OS X 10.11 using Qt 5.4.2). commit 677a9502ed8557bac7ec793c8f1ae0af3227b443 Author: Alan Garny Date: Wed Oct 7 19:37:35 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. We can now create a new or update an existing CellML 1.0 file based on the results of a simulation. commit d75992bb3604c9458624c81e770ac46f9f520bb2 Merge: 3ef2353a1 f3b1b058f Author: Alan Garny Date: Wed Oct 7 19:29:43 2015 +0200 Merge branch '\''master'\'' into issue33. commit f3b1b058fd6319ed884bdb0672565372754e87c8 Author: Alan Garny Date: Wed Oct 7 19:28:00 2015 +0200 Updated the developer documentation following our changes to the sample plugins [ci skip]. commit 2f2d2ec164d832166f5ed1a017031594cd0335e1 Author: Alan Garny Date: Wed Oct 7 18:25:55 2015 +0200 Updated our sample plugins following our slight simplification to the plugin interface. commit e04c8171395e4014ea37e5c257a0389b4a2c3f4e Author: Alan Garny Date: Wed Oct 7 18:05:42 2015 +0200 Plugin interface: don'\''t pass a pointer to the main window in initializePlugin() anymore. commit 4053233cb83b425ae946349531a48f1a10adaf08 Author: Alan Garny Date: Wed Oct 7 17:34:14 2015 +0200 Slight update to the user documentation following issue #779 [ci skip]. commit 0aefcc53740e3c7959732d42bf810b5e90fb493d Author: Alan Garny Date: Wed Oct 7 17:33:39 2015 +0200 OS X 10.11 (El Capitan): some work on addressing an issue with some parts of the GUI being black (closes #779). commit a778403462e64de962e1938ce36d5295c484d1b5 Author: Alan Garny Date: Wed Oct 7 17:33:22 2015 +0200 Some minor cleaning up [ci skip]. commit 8afff144b97812eebed6b95139f2586d6cf3d9aa Author: Alan Garny Date: Wed Oct 7 17:22:56 2015 +0200 Some minor cleaning up [ci skip]. commit 61c39925ff12125e190f54bf8154326cfa1f1764 Author: Alan Garny Date: Wed Oct 7 16:57:09 2015 +0200 OS X 10.11 (El Capitan): some work on addressing an issue with some parts of the GUI being black (#779) [ci skip]. commit 6e887603cb8b3f90748050a51c6cf613e3f765e2 Author: Alan Garny Date: Wed Oct 7 16:34:02 2015 +0200 OS X 10.11 (El Capitan): some work on addressing an issue with some parts of the GUI being black (#779) [ci skip]. commit 6d9ea4e42d36a7b4a7f7a55ce0e831e9873d6184 Author: Alan Garny Date: Wed Oct 7 15:05:56 2015 +0200 OS X 10.11 (El Capitan): some work on addressing an issue with some parts of the GUI being black (#779) [ci skip]. commit 6c134584bbf94972797693f772eea1318b5b9f9d Author: Alan Garny Date: Tue Oct 6 17:29:26 2015 +0200 Some minor cleaning up [ci skip]. commit 8f32dbf1541f76497eaae716c49982d51a552a91 Author: Alan Garny Date: Tue Oct 6 11:54:55 2015 +0200 Some minor cleaning up [ci skip]. commit 3ef2353a1b15c9599497ec293aec22adeceb60ed Author: Alan Garny Date: Tue Oct 6 10:28:24 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit ffadc31d1b375e9cc254373fc34ef6baf631fb43 Author: Alan Garny Date: Mon Oct 5 18:23:46 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation (#33) [ci skip]. commit 5fd4acb87932a2b26d8f64d2136189e8e8f07cf3 Author: Alan Garny Date: Mon Oct 5 16:49:25 2015 +0200 Content to Presentation MathML conversion: don'\''t generate some unnecessary parentheses (closes #774). commit 96faaae0f862a0d18915d8d6dac7f80f59afe174 Merge: 6813c2567 b97ae55b9 Author: Alan Garny Date: Sat Oct 3 21:15:06 2015 +0200 Merge pull request #778 from opencor/issue739 LLVM: upgraded to version 3.7.0 (closes #739). commit b97ae55b91773f3b23eed886090161da47c801d1 Author: Alan Garny Date: Sat Oct 3 20:24:53 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739). commit 55b05b443e8bf713d90161a38e459f9750391f8f Author: Alan Garny Date: Sat Oct 3 14:43:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 6813c2567ac797b1a2adb7d95648e80a2323fea0 Merge: 1f03f2063 f1ffe4d0e Author: Alan Garny Date: Sat Oct 3 12:04:29 2015 +0200 Merge pull request #777 from opencor/issue739 LLVM: upgraded to version 3.7.0 (closes #739). commit f1ffe4d0e7d396c2876e7aa9744084fff476c255 Author: Alan Garny Date: Sat Oct 3 11:21:23 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739). commit c5778e6688f9ef92c1a3adbb57e2c9efa7937c66 Author: Alan Garny Date: Sat Oct 3 11:10:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739). commit 2717533c4363e40fe41fd2cd237bcdfc86c40b01 Author: Alan Garny Date: Sat Oct 3 10:37:42 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739). commit 401ca4bfae73c20393d494ac07ae3798f4f7f7ed Author: Alan Garny Date: Sat Oct 3 10:37:25 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 1f03f206308137d75fed429c70bcd16e9ac86946 Author: Alan Garny Date: Sat Oct 3 10:27:23 2015 +0200 Some minor cleaning up [ci skip]. commit 377ebc3e724e8ef6cc06a90d1e01cb7a281ed9f8 Author: Alan Garny Date: Sat Oct 3 10:21:33 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739). commit e46d54411a2fe5db79536ed2807c7c74e3d3ed17 Author: Alan Garny Date: Sat Oct 3 01:34:29 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 3a2f859316555ccbe889ddad7eaaf136dc6e6816 Author: Alan Garny Date: Sat Oct 3 01:22:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 890c6672cffea9b0b77e2bc5f47b8b470eca659f Author: Alan Garny Date: Sat Oct 3 00:34:51 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit a8ce3d51cd88bd7af2471538d170c0e31ec0c590 Author: Alan Garny Date: Sat Oct 3 00:19:40 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 1136d69988b47b81e21eca161d0526148ed9cb33 Author: Alan Garny Date: Fri Oct 2 23:51:30 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit b9c8db3b00cbacc0d217bbd139e6af18d8248ce1 Author: Alan Garny Date: Fri Oct 2 18:21:06 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 621b1eaf1f15ccc1b97be206c5306c7444cebebc Author: Alan Garny Date: Fri Oct 2 16:50:28 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 7d8e10b6236dd3a2a3c76d955f2b82c32b42e069 Merge: abe0ca74a 5de1ce70a Author: Alan Garny Date: Fri Oct 2 13:33:04 2015 +0200 Merge pull request #776 from opencor/issue775 Single Cell view + SED-ML: namespace prefixes used in XPath expressions are now defined (closes #775). commit 5de1ce70ae3f789591fd03d66318730c485efae1 Author: Alan Garny Date: Fri Oct 2 13:09:16 2015 +0200 Single Cell view + SED-ML: namespace prefixes used in XPath expressions are now defined (#775). commit abe0ca74a837554dbee450aefea90b2915c01459 Author: Alan Garny Date: Thu Oct 1 16:25:23 2015 +0200 Slight update to the user documentation [ci skip]. commit 08997c9953fb3880334e656106f7b917c5b7c56a Author: Alan Garny Date: Thu Oct 1 16:23:46 2015 +0200 Viewer widget: now allow for both capital and minuscule Greek characters to be rendered (closes #773). commit 601dbed92b03525666415687721e88e03db7f063 Author: Alan Garny Date: Thu Oct 1 15:49:06 2015 +0200 Some minor cleaning up [ci skip]. commit fc742fe969d5a84f9f74f201a6c39c9589095fdb Author: Alan Garny Date: Thu Oct 1 15:41:00 2015 +0200 Some minor cleaning up [ci skip]. commit 109796c066b5a76740f0b330106fac4766b93ffb Author: Alan Garny Date: Thu Oct 1 11:01:43 2015 +0200 LLVM: some work on upgrading to version 3.7.0 (#739) [ci skip]. commit 90bae5d6a81fc83b59598c5b494f46d755823549 Merge: fc7a8cae3 69244c41a Author: Alan Garny Date: Thu Oct 1 09:49:44 2015 +0200 Merge pull request #772 from opencor/issue743 Single Cell view + SED-ML: can now export a simulation to a COMBINE Archive file (closes #743). commit 69244c41a648f0307a93fff97fde39d26e2277d3 Author: Alan Garny Date: Thu Oct 1 09:31:09 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit f78b2700688269bd5f44ab143ad617a2100728f4 Merge: 989defc1e fc7a8cae3 Author: Alan Garny Date: Thu Oct 1 09:15:03 2015 +0200 Merge branch '\''master'\'' into issue743. commit fc7a8cae30735bc11791410111215e5c855f0dae Author: Alan Garny Date: Thu Oct 1 08:54:17 2015 +0200 Travis CI: improved our calls to brew. Thanks to @The-Compiler’s suggestion to pass -v to the brew command (see https://github.com/Homebrew/homebrew/issues/44446). commit 681d0891fcd4f6377f48b59c52a21599d9a1b04f Author: Alan Garny Date: Thu Oct 1 08:52:36 2015 +0200 CellML Annotation view: addressed the case where looking up an unknown term when viewing a locked file results in a blank page (closes #765) [ci skip]. commit e50ddfc75888d4b6d27e719da6b9692d1cc67cd5 Merge: 52ddd65e8 c251089cc Author: Alan Garny Date: Wed Sep 30 19:22:33 2015 +0200 Merge pull request #771 from opencor/issue765 CellML Annotation view: addressed the case where looking up an unknown term when viewing a locked file results in a blank page (closes #765). commit c251089cce02af1d664498374448274c8c4ab783 Author: Alan Garny Date: Wed Sep 30 18:57:16 2015 +0200 CellML Annotation view: some work towards addressing the case where looking up an unknown term when viewing a locked file results in a blank page (#765). commit 1421844ac6928724a7cf4b85c3041fbe03843d20 Author: Alan Garny Date: Wed Sep 30 18:47:08 2015 +0200 CellML Annotation view: some work towards addressing the case where looking up an unknown term when viewing a locked file results in a blank page (#765) [ci skip]. commit 52ddd65e8bdd7eab165a30c5e60fb298eb56a6c4 Author: Alan Garny Date: Wed Sep 30 18:34:00 2015 +0200 Some minor cleaning up [ci skip]. commit d03f6884c2c8987269d9549a8d23f6e4b739fa9d Author: Alan Garny Date: Wed Sep 30 18:08:05 2015 +0200 Fixed a small issue with keeping Ctrl+Shift+T down (to reopen most recent files) potentially resulting in a recent file being opened several times (closes #770). commit 470717975c6ada43e073572a4b10d0d4f6ee7bde Author: Alan Garny Date: Wed Sep 30 17:36:46 2015 +0200 Some minor cleaning up [ci skip]. commit 989defc1edfb7b6a92c28d03abf7605a6eeefed9 Merge: c1fe63f74 1c2050c57 Author: Alan Garny Date: Wed Sep 30 11:43:31 2015 +0200 Merge branch '\''master'\'' into issue743. commit 1c2050c571e64d52e52394ee4917a211bdbf4a85 Author: Alan Garny Date: Wed Sep 30 11:42:46 2015 +0200 Travis CI: now uses CMake 3.3.2 on Linux. commit c1fe63f741594760807f5cfc43e3f2c39c98be9a Merge: 23f7b7103 e22bdae58 Author: Alan Garny Date: Wed Sep 30 11:38:43 2015 +0200 Merge branch '\''master'\'' into issue743. commit e22bdae58f780825d6fa18051a9f61441c7ab7fb Author: Alan Garny Date: Wed Sep 30 11:38:25 2015 +0200 Travis CI: slight brew-related '\''improvements'\''. commit 23f7b71038953672d8e0e53c143602c316b95c20 Merge: 7cbd826ab 40fbf5fe3 Author: Alan Garny Date: Wed Sep 30 11:18:28 2015 +0200 Merge branch '\''master'\'' into issue743. commit 40fbf5fe3e37a5034c2641de174fe422796d1907 Author: Alan Garny Date: Wed Sep 30 11:16:44 2015 +0200 Viewer widget: improved the rendering of certain equations [ci skip]. To render (with subscripts on) a = -b_c*d_e+f; used to result in b_c being rendered with c as a subscript of b (as expected), but then we would have expected the same for d_e (i.e. have e rendered as a subscript of d), but instead it was simply rendered as d_e (i.e. no subscript whatsoever). commit 09a1235b6f52468e070397dfee15912753e7b09f Author: Alan Garny Date: Wed Sep 30 11:09:18 2015 +0200 Viewer widget: slight improvements to the processing of a node [ci skip]. commit f046d0bbb112f515147012a7b906d0e881bbd278 Author: Alan Garny Date: Wed Sep 30 10:29:07 2015 +0200 Some minor cleaning up [ci skip]. commit 7cbd826ab77caf652d3fb3457b59951467cece84 Merge: c611a33c6 b780b6a54 Author: Alan Garny Date: Tue Sep 29 18:35:58 2015 +0200 Merge branch '\''master'\'' into issue743. commit b780b6a548e052cf403ca18c351194b439b33bd5 Merge: 711b52e53 888c493da Author: Alan Garny Date: Tue Sep 29 18:35:27 2015 +0200 Merge pull request #769 from opencor/issue768 Added a Content MathML to Presentation MathML converter (closes #768). commit 888c493daeb943fedaf65f8bb0dd86335837841d Author: Alan Garny Date: Tue Sep 29 18:11:27 2015 +0200 Added a Content MathML to Presentation MathML converter (#768). commit c611a33c6ab50a0acd55136d35aa7b7243eb4d2a Merge: 9d475195d 711b52e53 Author: Alan Garny Date: Tue Sep 29 14:52:46 2015 +0200 Merge branch '\''master'\'' into issue743. commit 711b52e531a3edd1436a465cc36731bcaead63ac Merge: b70bc3094 2db293c31 Author: Alan Garny Date: Tue Sep 29 14:29:36 2015 +0200 Merge pull request #767 from opencor/issue766 List what is new between two consecutive snapshots (closes #766). commit 2db293c3144146832812184d73e58eece6806e21 Author: Alan Garny Date: Tue Sep 29 13:57:48 2015 +0200 Travis CI: there is definitely a problem of sorts with the qt5 formula in brew, so (temporarily) redirecting the output to /dev/null. commit b009e003d3e17178c5fea2532e2113c5d0c30c92 Author: Alan Garny Date: Tue Sep 29 13:29:43 2015 +0200 Travis-CI: the previous commit passed, so reverting to make sure that it'\''s really what we need to do. If it is really what we need to do, then it would be because of installing Qt 5 through brew, which now seems to be outputting a lot of stuff when run through Travis-CI. Could that be due to the recent release of 5.5.0_1 bottle (see https://github.com/Homebrew/homebrew/commit/4ea4fd83963d1c1eb1e6fc024be9 719f8010748f)? commit c736ba4c99f53bc58dbbb87f99416435ccad66b5 Author: Alan Garny Date: Tue Sep 29 13:15:11 2015 +0200 Travis-CI: trying to address an issue on OS X about “the log length [having] exceeded the limit of 4 MB”. commit 65ab0f1a32527fced0fbf9f6484e15815b5c1647 Merge: cd19e6f79 b70bc3094 Author: Alan Garny Date: Tue Sep 29 10:42:02 2015 +0200 Merge branch '\''master'\'' into issue766. commit cd19e6f79f4913bc64409cb94992c2dd2a489336 Author: Alan Garny Date: Tue Sep 29 10:40:35 2015 +0200 Some work on listing what is new between two consecutive snapshots (#766). commit b70bc3094a0f1023e20eb8683298321cba219fd1 Author: Alan Garny Date: Tue Sep 29 10:17:32 2015 +0200 Some minor cleaning up [ci skip]. commit 29ea156d447b196defa3688eaa22282f84329cd4 Author: Alan Garny Date: Tue Sep 29 09:41:26 2015 +0200 Slight update to the developer documentation [ci skip]. commit c532df3d7d5e53f7fea5c0bad50ecc81a40a772a Author: Alan Garny Date: Mon Sep 28 19:11:09 2015 +0200 Some work on listing what is new between two consecutive snapshots (#766) [ci skip]. commit 50530dfb93597cc2ab531e0c454a12084c8f5add Author: Alan Garny Date: Mon Sep 28 18:43:27 2015 +0200 Some work on listing what is new between two consecutive snapshots (#766) [ci skip]. commit e1192373dd80d8228b1c13ad5e588f871a28d2be Author: Alan Garny Date: Mon Sep 28 17:37:01 2015 +0200 Some work on listing what is new between two consecutive snapshots (#766) [ci skip]. commit 28d3718c9b1e09c4549ea4ebf30e7ac9c95cb2c1 Author: Alan Garny Date: Mon Sep 28 16:13:26 2015 +0200 Some work on listing what is new between two consecutive snapshots (#766) [ci skip]. commit 8cbde57c77fd0bcd58a74f2ce7e29e8670e32760 Author: Alan Garny Date: Mon Sep 28 16:10:26 2015 +0200 Some minor cleaning up [ci skip]. commit 38519c5fa2136d09ba739fdfe87d251b9e890210 Author: Alan Garny Date: Mon Sep 28 15:24:51 2015 +0200 Slight update to the user documentation [ci skip]. commit 722fb14f325919d7dd3ee2ae3530471dfc558e3c Author: Alan Garny Date: Sun Sep 27 17:15:59 2015 +0200 New snapshots. commit 9d475195db728dbbf3f03b3346e14d1dd4014f81 Author: Alan Garny Date: Sun Sep 27 16:39:38 2015 +0200 Merge branch '\''master'\'' into issue743. commit fc2cc56531da867bb4367b8e987afd029e859feb Author: Alan Garny Date: Sun Sep 27 16:27:08 2015 +0200 Viewer widget: merge successive mrow'\''s (closes #763). commit 8b7e30e89f4ef1b8fa3df168fa9d42a89d5cf219 Author: Alan Garny Date: Sun Sep 27 16:21:02 2015 +0200 Viewer widget: merge successive mrow'\''s (closes #763). commit 250187784368149b55bc1d8f7126184f4ed4fd90 Author: Alan Garny Date: Sun Sep 27 15:29:37 2015 +0200 Content to Presentation MathML conversion: fixed a small issue with the bvar element [ci skip]. commit 20bc78d534e684d28fc7b5af3194cc55cda36a4a Author: Alan Garny Date: Sun Sep 27 14:41:10 2015 +0200 Viewer widget: can now, on Windows, copy a rendered equation to the clipboard (closes #764). commit 74ead6d9254a680b2467c6672f49ab50fb0fbb58 Author: Alan Garny Date: Sun Sep 27 14:34:09 2015 +0200 Slight updates to the user documentation [ci skip]. commit 4e117326f2f6b1ea5604772655d2bde66932f9b1 Author: Alan Garny Date: Sun Sep 27 13:19:04 2015 +0200 Qwt: slight improvement to QwtMathMLDocument [ci skip]. commit 8fdfb103a8af26be430220f62c1c7ddff3fca481 Author: Alan Garny Date: Sun Sep 27 12:58:49 2015 +0200 Slight updates to the user documentation (following issue #761). commit 400f718f731b12fa19eec208ebbb883366988ac5 Merge: 21df7adcb f0c2cec2d Author: Alan Garny Date: Sun Sep 27 12:46:50 2015 +0200 Merge pull request #762 from opencor/issue761 Content to Presentation MathML conversion: fixed some issues with the minus operator (closes #761). commit f0c2cec2d7134e67973e250b1ceaa1791b3e8a7e Author: Alan Garny Date: Sun Sep 27 12:38:14 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator (#761) [ci skip]. Fixed the issue with a=-(b*c)+d. commit 0774810d64a1069d21f07201a2cdd85ec5cae6ae Author: Alan Garny Date: Sun Sep 27 10:14:56 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator (#761) [ci skip]. Fixed the issue with a=-(b+c)+d and a=d-(b+c). commit c202ea7abd4597b0f6b7857b94db0482195c41b7 Author: Alan Garny Date: Sun Sep 27 09:48:02 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator (#761) [ci skip]. Improved the conversion of a=-(b*c). commit 21df7adcb1550587300fbad99c81b31c9502610b Author: Alan Garny Date: Sun Sep 27 09:07:37 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit 226082ad7a7fb128d8020fc30c0bd26486c36c84 Author: Alan Garny Date: Sat Sep 26 20:20:25 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit 0436595f92cd701cd67e86397372b589e320f1f9 Author: Alan Garny Date: Sat Sep 26 20:06:47 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit bff018db876b747344f8a677dbc678ceac123f8b Author: Alan Garny Date: Sat Sep 26 18:33:58 2015 +0200 Some minor cleaning up [ci skip]. commit a36aad9ffe4b5b4a33777cf6fff9c50aee6041ff Author: Alan Garny Date: Fri Sep 25 17:04:01 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 1b4f7dbf43fee0bc2dd7dc544adace43d28711e4 Author: Alan Garny Date: Fri Sep 25 16:56:20 2015 +0200 Merge branch '\''master'\'' into issue743. commit 210791181570912d838f7675558bf69c55ef56d2 Merge: 275444f61 b6ec7f863 Author: Alan Garny Date: Fri Sep 25 16:55:32 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit b6ec7f863475483a759a8d61c6e6eb6a396e171e Author: Alan Garny Date: Fri Sep 25 16:52:29 2015 +0200 ZIP support: make sure that we can extract files in subdirectories (#757). Say that you want to add ```dir/file.txt``` to a ZIP writer. Then, to extract all of the ZIP file will fail because ```dir``` doesn’t exist. Now, I would have thought that this could have been solved by adding the ```dir``` directory to our ZIP writer, but this then results in a ZIP file that cannot be unzipped using OS X’s default unzipper. So, instead, during the extraction, we check that the folder in which a file should be extracted exists and if it doesn’t then create it. commit 275444f61f5a147c51eb7b74f0daa63456a1baf4 Author: Alan Garny Date: Fri Sep 25 15:08:37 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 4acc86639e890c3f35f73d625f27583370f19718 Author: Alan Garny Date: Fri Sep 25 15:00:50 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 70ce6143daceaa82c132f4a8e3267a930c588c13 Author: Alan Garny Date: Fri Sep 25 15:00:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 00f68ce292af63353afb5d0ded1cd858a5ecf511 Author: Alan Garny Date: Fri Sep 25 10:23:56 2015 +0200 Merge branch '\''master'\'' into issue743. commit f5f3c992cc0b2009957e8a52fbdab34408b87cf4 Author: Alan Garny Date: Fri Sep 25 10:22:16 2015 +0200 Some minor cleaning up our ZIP support tests. commit de6962114ab8182674a991c91318c41e5773f45f Author: Alan Garny Date: Fri Sep 25 10:19:26 2015 +0200 Merge branch '\''master'\'' into issue743. commit ccb8ce380a8e77919b12ef2e8df120c5dc321e21 Author: Alan Garny Date: Fri Sep 25 10:14:51 2015 +0200 Some minor cleaning up our ZIP support tests. commit 43d1c28fae485394cd12e3fa6aee9b0bb16bacf9 Author: Alan Garny Date: Fri Sep 25 09:55:27 2015 +0200 Merge branch '\''master'\'' into issue743. commit 2d3b305eb009efc947ac99ae10889276c5cc7bf3 Author: Alan Garny Date: Fri Sep 25 09:54:53 2015 +0200 Some minor cleaning up our ZIP support tests. commit 60a538cca92ec4444df02242c70dd1c82081316c Author: Alan Garny Date: Thu Sep 24 19:36:35 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 5756ac1c5d81768ed288ca4b4d73b6f68cb3c776 Author: Alan Garny Date: Thu Sep 24 18:15:14 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 649505081dd832d73d893fa76c26f13cfdb114d1 Author: Alan Garny Date: Thu Sep 24 17:55:21 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit ba3f4396845b1d4eafc59c099a17efc57d6e1470 Merge: 19c64ec6d 9436eab3d Author: Alan Garny Date: Thu Sep 24 17:40:58 2015 +0200 Merge branch '\''master'\'' into issue743. commit 9436eab3d691b329346eca3a28d3cde4b40af385 Merge: 279c65998 f19647886 Author: Alan Garny Date: Thu Sep 24 17:39:42 2015 +0200 Merge pull request #760 from opencor/issue759 Made the busy widget enable/disable its remote/direct parent widget (closes #759). commit f196478861526e01355011ca9cd53e481a9a563d Author: Alan Garny Date: Thu Sep 24 17:17:56 2015 +0200 Some work on making a busy widget enable/disable its remote/direct parent widget (#759). commit 52d0f84f6cc8813da281b955bdb06351afce8ca1 Author: Alan Garny Date: Thu Sep 24 16:24:30 2015 +0200 Some work on making a busy widget enable/disable its remote/direct parent widget (#759). commit 19c64ec6d5a14acdd478748560788fc1e324669e Author: Alan Garny Date: Thu Sep 24 15:01:55 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 3cd58724094ab8c42d37449d096894d55e173710 Author: Alan Garny Date: Thu Sep 24 14:49:55 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 329a11a34953311a847fb1d1d969c8f95ce1b885 Author: Alan Garny Date: Thu Sep 24 10:19:17 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 0451123a6c205d2921872bde06fa9f8d0896c10b Author: Alan Garny Date: Wed Sep 23 18:37:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit ac44d53554cd8c901f83872907f07e825c12a5cd Author: Alan Garny Date: Wed Sep 23 18:31:46 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit ec61b6744a317f4ac07a83304eb657b1d7becbf9 Author: Alan Garny Date: Wed Sep 23 18:06:08 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 18a86a4c9bb554d16a1409e91d07b9d42db7822b Author: Alan Garny Date: Wed Sep 23 18:00:51 2015 +0200 Merge branch '\''master'\'' into issue743. commit 279c6599825d73399ccd589b7dc80cd5aabd0822 Author: Alan Garny Date: Wed Sep 23 17:56:07 2015 +0200 Some minor cleaning up [ci skip]. commit 5c3b6e3f944ead95874be1a8b3cfa8f52a94c0cd Author: Alan Garny Date: Wed Sep 23 17:39:44 2015 +0200 Merge branch '\''master'\'' into issue743. commit 60a7daa544afa1037d7e8f0623f9977b7696bf06 Author: Alan Garny Date: Wed Sep 23 17:39:17 2015 +0200 Some minor cleaning up [ci skip]. commit 2009d93cf1f8a35b37263380a00746b8d0decf94 Author: Alan Garny Date: Wed Sep 23 16:23:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 4c12bc66a03f18acc6209707514004eb5c2fe0b2 Author: Alan Garny Date: Wed Sep 23 16:08:25 2015 +0200 Some minor cleaning up [ci skip]. commit ffa5319fcbf4fe59843bb134f938c24d523eeafb Author: Alan Garny Date: Wed Sep 23 15:50:26 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit dae9e20e6fd0412904cd2427b2020f7e706f21dd Author: Alan Garny Date: Wed Sep 23 15:48:01 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit b56a35cdc1fd1896a615cff3e9d8aaf12066f52d Author: Alan Garny Date: Wed Sep 23 15:46:19 2015 +0200 Merge branch '\''master'\'' into issue743. commit 6a93939cc0ed02e7a1834c5960ae9612a2119d8f Author: Alan Garny Date: Wed Sep 23 15:46:01 2015 +0200 Some minor cleaning up [ci skip]. commit 2b9af740862a2caa77a3140e1ebcee83415b8a44 Author: Alan Garny Date: Wed Sep 23 15:40:35 2015 +0200 Some minor cleaning up [ci skip]. commit b921c6af4ec94a80adcbb577fb5249e099af5e0b Author: Alan Garny Date: Wed Sep 23 15:28:14 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit e6ac06554a036a28df1c0e423c6f4066e135ea5d Author: Alan Garny Date: Wed Sep 23 15:11:47 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 17b04c918f08f941b857713c156a6cd90b7501a8 Author: Alan Garny Date: Wed Sep 23 15:06:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 7efd988da6bd6d2b6602cd4a8b51e361299fe1f4 Author: Alan Garny Date: Wed Sep 23 13:07:54 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit b75a8bb398b1b746922e121d13063baffcee4149 Author: Alan Garny Date: Wed Sep 23 11:22:35 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 4d62c27a6189f91cc6beb35b6fa19d5884530bde Author: Alan Garny Date: Wed Sep 23 11:22:08 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 1a7e0b8ee8931e59b1554dc15b5dce5eb721c842 Author: Alan Garny Date: Wed Sep 23 11:01:43 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit c6f17152f1af9121b5f6d7594c18209fa6a4e729 Author: Alan Garny Date: Wed Sep 23 10:46:16 2015 +0200 Some minor cleaning up [ci skip]. commit d9ad224e2da9960914a8a25882d66a537208149b Author: Alan Garny Date: Wed Sep 23 10:45:44 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 6e7d8558a15c893cf87b9dac0aa9407677790066 Author: Alan Garny Date: Tue Sep 22 18:25:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 4a2fb28cb66fd5906cff00344ba71cf20bdf7940 Author: Alan Garny Date: Tue Sep 22 18:18:27 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 91c354767973c2226e2e6547a51c4e7a15069fa7 Author: Alan Garny Date: Tue Sep 22 18:08:13 2015 +0200 Merge branch '\''master'\'' into issue743. commit 3ff79ee3051f95054a644892c3bc37ab499d2ea0 Author: Alan Garny Date: Tue Sep 22 18:07:56 2015 +0200 Some minor cleaning up [ci skip]. commit e4fdd020d9ab67e8cc71142ee554a4368b977c6f Author: Alan Garny Date: Tue Sep 22 17:55:06 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit b369f399c59abf15e12cc1566db6362d729ed226 Merge: 9e98900f6 9e07f8bf7 Author: Alan Garny Date: Tue Sep 22 17:36:32 2015 +0200 Merge branch '\''master'\'' into issue743. commit 9e07f8bf7ffc8a1ade4fe0a44adedbf1477bdd13 Author: Alan Garny Date: Tue Sep 22 17:36:20 2015 +0200 Some minor refactoring [ci skip]. commit 9e98900f652808b6b47434119fadc20ec8861f7a Author: Alan Garny Date: Tue Sep 22 17:31:13 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 672a4ccdb395375b6361c4d6fed94e55a6c4a435 Merge: 6e72c41fb 5f0d876c9 Author: Alan Garny Date: Tue Sep 22 16:46:05 2015 +0200 Merge branch '\''master'\'' into issue743. commit 5f0d876c99b144f4c066a32e1c0471d407fec15a Merge: f088f3333 70186b23e Author: Alan Garny Date: Tue Sep 22 16:44:58 2015 +0200 Merge pull request #758 from opencor/issue757 ZIP support: added support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (closes #757). commit 70186b23eeb919533ff29391fc2dd7bad6c374aa Author: Alan Garny Date: Tue Sep 22 16:15:39 2015 +0200 ZIP support: some work on adding support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (#757). commit e2b640dcf38cf277185ae1903a1a1b4295ba69d8 Author: Alan Garny Date: Tue Sep 22 15:31:38 2015 +0200 ZIP support: some work on adding support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (#757) [ci skip]. commit 17004b0ba48be184fd08113d0bf4b96e8345c60a Author: Alan Garny Date: Tue Sep 22 14:20:37 2015 +0200 Merge branch '\''master'\'' into issue757. commit f088f33333d58d263d416dc3c2f47c1141425806 Author: Alan Garny Date: Tue Sep 22 14:20:13 2015 +0200 Some minor cleaning up [ci skip]. commit 01be2a3be062fff34a256922d8305f5cf05cbdf6 Author: Alan Garny Date: Tue Sep 22 14:17:49 2015 +0200 QZip: some work on adding support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (#757) [ci skip]. commit 4ee93034a58069fa5be1ebe34343c7148d3f2dd3 Author: Alan Garny Date: Tue Sep 22 14:12:24 2015 +0200 QZip: some work on adding support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (#757) [ci skip]. commit 9a5c0eeca52a591fc2fbe1ef4331d790d988c942 Author: Alan Garny Date: Tue Sep 22 14:05:53 2015 +0200 QZip: some work on adding support for ZIP files through Qt'\''s undocumented QZipReader and QZipWriter classes (#757) [ci skip]. commit 797356b820a819d4e3675385decc95dd4b06e505 Author: Alan Garny Date: Tue Sep 22 13:19:45 2015 +0200 Some minor cleaning up [ci skip]. commit 6e72c41fbef0ba23c0c8c8b593e6051d3942e0b2 Author: Alan Garny Date: Tue Sep 22 11:11:20 2015 +0200 Merge branch '\''master'\'' into issue743. commit 99fcb9cb77549a52e7d383a2344b2535aa8653ff Merge: 0c7bd4f49 d514bd614 Author: Alan Garny Date: Tue Sep 22 11:09:30 2015 +0200 Merge pull request #756 from opencor/issue752 Single Cell view: fixed an issue with changing parameters (when a simulation is paused) not having any effect (closes #752). commit d514bd614f7fcf8b678593700c0fc8bd61bc77c4 Author: Alan Garny Date: Tue Sep 22 10:46:54 2015 +0200 Single Cell view: fixed an issue with changing parameters (when a simulation is paused) not having any effect (#752). commit bf5fd249da14ccbe0dc24db52675a80092d1a21e Author: Alan Garny Date: Tue Sep 22 10:38:34 2015 +0200 Some minor cleaning up [ci skip]. commit 6238c08eae979ff0c4e264a25040ab6600a0e9a8 Merge: 798a0cab7 0c7bd4f49 Author: David Brooks Date: Tue Sep 22 10:33:19 2015 +1200 Merge branch '\''master'\'' into libbsml commit 9830162f9b428230824744fd06fe0d4146645637 Merge: 713ea01be 0c7bd4f49 Author: Alan Garny Date: Mon Sep 21 15:47:56 2015 +0200 Merge branch '\''master'\'' into issue743. commit 0c7bd4f494b3b581996cea5385b37f05337dd38e Merge: 3f8a31be7 f25f5ba43 Author: Alan Garny Date: Mon Sep 21 15:46:03 2015 +0200 Merge pull request #755 from opencor/issue754 Xcode: upgraded to version 7.0 (closes #754). commit f25f5ba43274703c300529a9fdade4dc5617854e Author: Alan Garny Date: Mon Sep 21 15:23:35 2015 +0200 Xcode: upgraded to version 7.0 (#754). commit 3f8a31be724aef8cb5c4a70b95f6fda9f3b6c10b Author: Alan Garny Date: Mon Sep 21 13:55:33 2015 +0200 Travis CI: still cannot use Ubuntu 14.04 LTS (trusty) as opposed to Ubuntu 12.04 LTS (precise), so cleaning up. commit 99a16eee98a831697c8b05ec024621c817e6ee61 Author: Alan Garny Date: Mon Sep 21 13:50:31 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS (trusty) rather than Ubuntu 12.04 LTS (precise). commit c38b45aaf875a23e3b6b352804e5aeb0b869bb29 Author: Alan Garny Date: Mon Sep 21 13:39:11 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS (trusty) rather than Ubuntu 12.04 LTS (precise). commit cbba7e7bd7b1c14b923ec34717599ec9be60c093 Author: Alan Garny Date: Mon Sep 21 13:37:48 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS (trusty) rather than Ubuntu 12.04 LTS (precise). commit 5e1adb4b239cf95e6c8fcf754be53bdf69fe06aa Author: Alan Garny Date: Mon Sep 21 13:36:35 2015 +0200 Travis CI: only notify team@opencor.ws. commit faec23fd3523b77bef87f7dae01e88389af18710 Merge: bd0197f36 75e235158 Author: Alan Garny Date: Mon Sep 21 11:14:33 2015 +0200 Merge pull request #753 from opencor/issue751 SED-ML API: upgraded to version 0.3.1 (closes #751). commit 75e235158274338f8ca7f082fdc1f496dc4f1fa3 Author: Alan Garny Date: Mon Sep 21 10:52:55 2015 +0200 libSEDML: upgraded to version 0.3.1 (#751). commit 713ea01bef65cc059003dfa3785df766fdbcd77d Author: Alan Garny Date: Mon Sep 21 10:37:13 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit bd0197f367b8999aa92f51b12fe9096c078704f2 Author: Alan Garny Date: Sun Sep 20 11:54:53 2015 +0200 Some minor cleaning up [ci skip]. commit 176bebf0a5601e50b751ec1c7b8047ba749475f3 Author: Alan Garny Date: Sat Sep 19 16:39:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 7b160a9c7044bbfa6ccfec611b2f0fb279a17c5e Author: Alan Garny Date: Sat Sep 19 15:46:51 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit c3c27488121081aa943042af70af595ca0bf7073 Author: Alan Garny Date: Sat Sep 19 15:44:51 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 9555241c3e6efd7ae5973b81837d5c91cf92efd8 Author: Alan Garny Date: Sat Sep 19 14:07:12 2015 +0200 Some minor cleaning up [ci skip]. commit cf1a6d5b10538e7bc4fb2a486f7137caa9ee34cd Author: Alan Garny Date: Fri Sep 18 14:57:23 2015 +0200 libSEDML: upgraded to version 0.3.1 (#751). commit 3509c0943d6d6c06cc534fdb183f9f0f032eef41 Merge: 1f5363e7b b49def259 Author: Alan Garny Date: Thu Sep 17 15:57:28 2015 +0200 Merge branch '\''master'\'' into issue743. commit b49def2590ca03bcbfb9c3cc5ba1e97798b241a8 Author: Alan Garny Date: Thu Sep 17 15:15:47 2015 +0200 Single Cell view: improved the GUI when it comes to exporting simulation data [ci skip]. commit 1f5363e7b18e82b300de4dd7cee86d01bfe53213 Author: Alan Garny Date: Thu Sep 17 14:55:48 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file (#743) [ci skip]. commit 9d70323d0b84ac2755064431d681cb72598fac7e Author: Alan Garny Date: Thu Sep 17 09:55:39 2015 +0200 Some minor cleaning up [ci skip]. commit a480025952a36816023c9093fc8e2c7656a89445 Merge: 812102d11 55d90423b Author: Alan Garny Date: Wed Sep 16 10:37:59 2015 +0200 Merge pull request #750 from opencor/issue749 libgit2: upgraded to version 0.23.2 (closes #749). commit 55d90423b0647dee5bfcd1755ec2b07e4b5bae99 Author: Alan Garny Date: Wed Sep 16 10:15:41 2015 +0200 libgit2: some work on upgrading to version 0.23.2 (#749). commit 72927945b324096123f814ae770ec127c69d8d6a Author: Alan Garny Date: Wed Sep 16 09:56:30 2015 +0200 libgit2: some work on upgrading to version 0.23.2 (#749) [ci skip]. commit 5fdfd77b9fb91f9e58a965bd02f6eeeefa117ebe Author: Alan Garny Date: Wed Sep 16 09:52:15 2015 +0200 libgit2: some work on upgrading to version 0.23.2 (#749) [ci skip]. commit c115a9759016a0a81b9e1fa11c4fed74ab8e4ff8 Author: Alan Garny Date: Wed Sep 16 09:51:22 2015 +0200 libgit2: some work on upgrading to version 0.23.2 (#749) [ci skip]. commit 812102d117c350061b4fcf706b66054b037576fe Merge: 911fccbcf ce03b8e32 Author: Alan Garny Date: Tue Sep 15 23:53:31 2015 +0200 Merge pull request #748 from opencor/issue747 Check whether an Internet connection is available before doing anything Internet-related (closes #747). commit ce03b8e3278252af31c02097b5cfa0e2161e77c1 Merge: ead2a5d16 911fccbcf Author: Alan Garny Date: Tue Sep 15 23:23:09 2015 +0200 Merge branch '\''master'\'' into issue747. commit ead2a5d165cf87f119084e7807def16540efcb55 Author: Alan Garny Date: Tue Sep 15 23:18:33 2015 +0200 Some work on checking whether an Internet connection is available before doing anything Internet-related (#747). commit 911fccbcf3f3349d248fb4f068b4ff56a846a20e Author: Alan Garny Date: Tue Sep 15 22:15:40 2015 +0200 Some minor cleaning up [ci skip]. commit 2f94d93ae5383de8b8aa5eaf282668d54f4cdf85 Author: Alan Garny Date: Tue Sep 15 21:46:21 2015 +0200 Some work on checking whether an Internet connection is available before doing anything Internet-related (#747) [ci skip]. commit 80c9bb7e273088b159c449e0918bb3950ad88031 Author: Alan Garny Date: Tue Sep 15 17:29:40 2015 +0200 Single Cell view + SED-ML: made it possible to plot derivatives (closes #744). Argh, forgot that one needs to convert a number to a string to pass it as an argument to a QString! commit f1f843a9a51b4f93b3aa44c0d5960c806a508f11 Author: Alan Garny Date: Tue Sep 15 17:17:33 2015 +0200 Single Cell view: fixed an issue with a wrong Y axis range being used in a particular case (closes #745). commit 8adab8d2fec30d30a3b377cadebc1df448f672f0 Author: Alan Garny Date: Tue Sep 15 17:14:26 2015 +0200 Some minor cleaning up [ci skip]. commit d6215dfcead2b8fcfe6ca5f6410b33f17c2913b3 Author: Alan Garny Date: Tue Sep 15 16:58:22 2015 +0200 Some minor cleaning up [ci skip]. commit 914ac17c16a4b209c14de01a49d13eeda98d6e59 Author: Alan Garny Date: Tue Sep 15 10:27:40 2015 +0200 Single Cell view + SED-ML: made it possible to plot derivatives (closes #744). commit c483380d886bbc1281a26ffa0772d7e3b23aa6f3 Author: Alan Garny Date: Fri Sep 11 22:36:46 2015 +0100 Solvers: added new KiSAO ids [ci skip]. commit 7d244ff236abb19dd1471cde2e40924aa04b0ec6 Author: Alan Garny Date: Tue Sep 8 18:44:07 2015 +0200 SED-ML export: had forgotten to set a task reference for our variables (#684) [ci skip]. commit db1f171a663cd729632c77e9b84814df7f576f06 Author: Alan Garny Date: Tue Sep 8 17:01:37 2015 +0200 Allow Core::getSaveFileName() to return the same file name [ci skip]. The original idea was that if we were to save a file under a new name, then we couldn’t use the same name for the file. However, this can be a problem if we want to export a SED-ML file since we will give Core::getSaveFileName() the file path of a SED-ML. So, if we were to agree to using that file name, Core::getSaveFileName() would complain, which is not what we want. So, instead, it should be the caller who should handle, if needed, the case where we are using the same file name. commit 9702bbf6fee0888c71e946da9748d17d478cdbe6 Author: Alan Garny Date: Tue Sep 8 16:38:54 2015 +0200 Single Cell view: fixed a small problem with SED-ML export [ci skip]. The relative path of a local file wasn’t always correct. commit 3789169ddaf7b89c604fe3ab524f94bd5a2b5360 Author: Alan Garny Date: Tue Sep 8 15:29:28 2015 +0200 Single Cell view: fixed a small problem with SED-ML export The relative path of a local file wasn’t always correct. commit 2cdc8ecefed5c77b521ddffa6bcf1d12292dd1df Author: Alan Garny Date: Tue Sep 8 14:55:56 2015 +0200 Single Cell view: swapped the position of the SED-ML export and Simulation Data export buttons [ci skip]. commit f0916bdbbdbacb539e5b99aa2a4074fda2300fa9 Author: Alan Garny Date: Mon Sep 7 09:58:13 2015 +0200 New snapshots. commit 5d94a8d11a589ab586ed7b05eba31ed75ffebe5a Merge: c51b7e5c2 818c342da Author: Alan Garny Date: Sat Sep 5 16:14:19 2015 +0200 Merge pull request #741 from opencor/issue684 Single Cell view: can now export a basic simulation to SED-ML (closes #684). commit 818c342da7ce8a4ce0ddb4507f4dca02ee8da118 Author: Alan Garny Date: Sat Sep 5 15:44:02 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684). commit bdfdfb96404c3903a3c95b6469601cb6d5cc804f Author: Alan Garny Date: Sat Sep 5 15:23:17 2015 +0200 Some minor cleaning up [ci skip]. commit 8fee30ca38d0f0056d9090090e2d92f459ab7583 Merge: 5c607d6b6 c51b7e5c2 Author: Alan Garny Date: Sat Sep 5 15:10:37 2015 +0200 Merge branch '\''master'\'' into issue684. commit 5c607d6b6a0bf0d5527425fee50787634ae1890a Author: Alan Garny Date: Sat Sep 5 15:10:06 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit c51b7e5c256fc3faf46343427562378dc2987ad4 Author: Alan Garny Date: Sat Sep 5 11:06:10 2015 +0200 Some minor cleaning up [ci skip]. I cleaned up a bit too much in the last commit! commit efead417cbf331041eaeed173222c085262e31f8 Author: Alan Garny Date: Sat Sep 5 10:31:31 2015 +0200 Some minor cleaning up [ci skip]. commit a1edf4887fd2a7518f053ee64b6753ea72bdae8b Author: Alan Garny Date: Sat Sep 5 10:29:19 2015 +0200 Some minor cleaning up [ci skip]. commit cdb3878bdb2473e26c12a39452ff6993be6bc898 Author: Alan Garny Date: Fri Sep 4 17:52:31 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit c1c99d2b1538b4c1993aa9b9b6eac6d8283f56b7 Author: Alan Garny Date: Fri Sep 4 17:23:55 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 6b6400b6d3dbf52d1a8a16dfc2940b1f300bf4ef Author: Alan Garny Date: Fri Sep 4 17:12:06 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. Hmm, we don’t actually need to add those namespaces. commit e4cadc4ed299397ed1cd0ea77a6a31d4af9ac41d Author: Alan Garny Date: Fri Sep 4 17:01:14 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 75cc96ec3132ef10f56ebee397b4bfe98bbed503 Author: Alan Garny Date: Fri Sep 4 14:01:50 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit db4ead126481cef8897e3bf0d7c08b6db938523f Author: Alan Garny Date: Fri Sep 4 13:43:55 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit f64bd71943b63a170bc36ca25de0cb5c071ab68d Author: Alan Garny Date: Fri Sep 4 13:32:51 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 6f27fa3f2629fafdedc2e84356e0dc61cf41900a Merge: 21b42147a 7ac310f68 Author: Alan Garny Date: Fri Sep 4 11:53:28 2015 +0200 Merge branch '\''master'\'' into issue684. commit 21b42147acc89101a34722ffd5154a504e82ad41 Author: Alan Garny Date: Fri Sep 4 11:53:17 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 7ac310f68b1d6b5a409bfe868c18a0b232ba1715 Author: Alan Garny Date: Fri Sep 4 11:51:48 2015 +0200 Single Cell view: fixed a problem with changing a graph'\''s model not always refreshing the graph panel (closes #740). commit 15f0f46a44073cad16abed6a3f94e9db0fce6ac0 Author: Alan Garny Date: Fri Sep 4 11:51:02 2015 +0200 Some minor cleaning up [ci skip]. commit 68bd523e8051a433e23f81161509d8529d2e01af Author: Alan Garny Date: Thu Sep 3 17:01:13 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit e3d22b6557d8aa11a27055d45c72d8662676000c Merge: 142202cf3 20f313af1 Author: Alan Garny Date: Thu Sep 3 16:41:58 2015 +0200 Merge branch '\''master'\'' into issue684. commit 20f313af168237cfff7d5391ca229b30c3145958 Author: Alan Garny Date: Thu Sep 3 16:41:27 2015 +0200 Slight update to the developer documentation [ci skip]. commit 93e8d97168bb1c7768802524f88460c0aa026541 Author: Alan Garny Date: Thu Sep 3 15:40:48 2015 +0200 Slight update to the user documentation [ci skip]. commit 142202cf3796ec03f96657b59594993af4d49973 Author: Alan Garny Date: Thu Sep 3 15:13:15 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 3aaef571bb941e419f0d01e5626015be177deaaa Author: Alan Garny Date: Thu Sep 3 14:29:28 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 3922c6493d88601c23763a3708ba234ad4386f34 Author: Alan Garny Date: Thu Sep 3 14:28:41 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 4ec6759e0bffc287d79eb522d41fcf6fefc89266 Author: Alan Garny Date: Thu Sep 3 13:26:44 2015 +0200 Slight update to the developer documentation [ci skip]. commit ba055f2a3db6da44d5de800efcf5c032b2b6890b Author: Alan Garny Date: Thu Sep 3 11:04:13 2015 +0200 Some minor cleaning up [ci skip]. commit ff8ae60baa9cd9642284875bb5ea8d24bc9d77fd Author: Alan Garny Date: Thu Sep 3 11:04:03 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 798a0cab75c5beb31f68650b376d1068fe60c4c2 Author: David Brooks Date: Thu Sep 3 17:38:22 2015 +1200 Updated translations file. commit 83194f383985a02bd6b8839b93044ffbf10f5ebb Author: David Brooks Date: Thu Sep 3 17:37:51 2015 +1200 Tweak layout of BioSignalML dialogs. commit b094dec1a5847f4da5a21b328c7e46e9eb547d27 Author: David Brooks Date: Thu Sep 3 17:11:17 2015 +1200 Add the ability to specify variables to save in a BioSignalML file. commit 86d5db04cdf785aa91fa969fa7c0317dc702c036 Author: David Brooks Date: Thu Sep 3 11:08:09 2015 +1200 Work for internationalising comment when saving to BioSignalML. commit 642838aa5e49348cbb3f4b9d396ec3e984f7dc89 Author: David Brooks Date: Thu Sep 3 11:05:38 2015 +1200 Update to use changes in pull request #737 from opencor/issue736 Improved the use of file names throughout OpenCOR plugins (closes #736). commit 507a1b36bb7c678e2be2963d1a33d515a0bd4180 Merge: 0aed32a9e 4d201a5fc Author: David Brooks Date: Thu Sep 3 09:44:24 2015 +1200 Merge branch '\''master'\'' into libbsml commit b6f24472b874af1076d4a7a46cb2a219310091ce Author: Alan Garny Date: Wed Sep 2 18:37:03 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 260df78a43de414b93d4146833ce0e3f446bc114 Author: Alan Garny Date: Wed Sep 2 18:30:37 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 007b5011f921ae0f6a7a731d5589113c32623cba Author: Alan Garny Date: Wed Sep 2 18:29:49 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit f0bac8e753be46c968dce1a0212e30e0441c3771 Author: Alan Garny Date: Wed Sep 2 18:16:54 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 577e58bec48f4eebddba2c92c7005b3184a4d027 Author: Alan Garny Date: Wed Sep 2 18:04:34 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 8a8b7bc64cbc21972e0906f686efbba60b1f4c80 Author: Alan Garny Date: Wed Sep 2 17:50:39 2015 +0200 Some minor cleaning up [ci skip]. commit ed00e723fae476c088504849c7460b3bcef8a799 Author: Alan Garny Date: Wed Sep 2 17:00:20 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 50d0bbb865704fb2707ad2b288df7e2578ad89fb Merge: 78bc90606 4d201a5fc Author: Alan Garny Date: Wed Sep 2 14:55:52 2015 +0200 Merge branch '\''master'\'' into issue684. commit 4d201a5fc6bdd90450b428559b569c92e1a9518f Author: Alan Garny Date: Wed Sep 2 14:54:58 2015 +0200 KaTeX: upgraded to version 0.5.1 (closes #738). commit 78bc90606c119370d4acdb43269c2a7ac0957906 Merge: 5cff9d027 ab9d0575f Author: Alan Garny Date: Wed Sep 2 14:36:15 2015 +0200 Merge branch '\''master'\'' into issue684. commit ab9d0575f6d518b1ac01790881a997ca7fb4f60f Author: Alan Garny Date: Wed Sep 2 14:36:03 2015 +0200 Updated our SampleView plugin and its corresponding documentation. commit 5cff9d0275f04166ea877d2c8382854a07c07525 Merge: 9ca871bc4 802a026f8 Author: Alan Garny Date: Wed Sep 2 13:50:46 2015 +0200 Merge branch '\''master'\'' into issue684. commit 802a026f8a290423d74ef64d89f97cfbfda01b81 Merge: a9b4fc667 2d43610d3 Author: Alan Garny Date: Wed Sep 2 13:48:20 2015 +0200 Merge pull request #737 from opencor/issue736 Improved the use of file names throughout OpenCOR plugins (closes #736). commit 2d43610d3e918c48e26c18cf936797f0e145595b Author: Alan Garny Date: Wed Sep 2 13:37:38 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit 49c696f452687e0e6cf50131a43f012552fcec6e Author: Alan Garny Date: Tue Sep 1 17:55:16 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit e4e771bfd26f7f116d2fd660924a2967874ae469 Author: Alan Garny Date: Tue Sep 1 17:54:18 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit 866aa6ba840643372339b767a97c01e9ce54bf9e Author: Alan Garny Date: Tue Sep 1 17:53:57 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit d2061652189e71efb4037c9b7d82b3ad9b647535 Author: Alan Garny Date: Tue Sep 1 17:16:52 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit 0893924a4dc22b3c357e265c04c3117e5133d922 Author: Alan Garny Date: Tue Sep 1 17:14:41 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit c6d491cd35451e35a618cca463ac235a378eda1f Author: Alan Garny Date: Tue Sep 1 17:04:32 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit f720aad579a6ac0e7bb52f30f769386275c61508 Author: Alan Garny Date: Tue Sep 1 16:48:17 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit 25f3b5b9ad6b2c93ebe101197ad4bd99833e065e Author: Alan Garny Date: Tue Sep 1 16:26:01 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins (#736) [ci skip]. commit 9ca871bc42c4a58b31826c13dd51c7e308d3cbdb Author: Alan Garny Date: Tue Sep 1 15:32:33 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 8818a4108e0f0da857e58d605ab9c3adff47ec6c Merge: 3b4806cc1 a9b4fc667 Author: Alan Garny Date: Tue Sep 1 11:23:44 2015 +0200 Merge branch '\''master'\'' into issue684. commit a9b4fc667eba561a3300265e99bebb15ff501d65 Author: Alan Garny Date: Tue Sep 1 11:22:49 2015 +0200 Slight update to the developer documentation [ci skip]. commit 0aed32a9ef00d70b7035b1c7c2ad4d3ce6f250b4 Author: David Brooks Date: Fri Aug 28 19:32:57 2015 +1200 Update `typedobject` library -- statically link libraptor... commit 50460fca112a84585db56f59c11925585d942238 Author: David Brooks Date: Tue Aug 25 19:22:08 2015 +1200 Update libraries. commit 45d03b874a360f97d352d443732112ba5bf7680e Author: David Brooks Date: Tue Aug 25 16:39:14 2015 +1200 We need to specify a full URI for the recording'\''s clock. commit 918639b2d4cd1d9aa0a5e637566827fa9e6eb109 Merge: 6dea6578b 528c65686 Author: David Brooks Date: Tue Aug 25 11:45:11 2015 +1200 Merge branch '\''master'\'' into libbsml commit 6dea6578bff0f6db5bfce57068d3815658791070 Author: David Brooks Date: Tue Aug 25 11:34:51 2015 +1200 Save recording'\''s duration as metadata. commit e29e17a1c8a822d1b4f4baa9216cec649c4b93dd Author: David Brooks Date: Tue Aug 25 11:34:11 2015 +1200 Use full URIs for signals. commit 818ad62fc8dcc3d5847cc47a7268aab7b32c30d1 Author: David Brooks Date: Tue Aug 25 10:49:59 2015 +1200 Update `typedobject` and `biosignalml` libraries. commit 528c656860015e5595cbdc793e8263f402f60b89 Author: Alan Garny Date: Sun Aug 23 12:55:45 2015 +0200 Slight update to the developer documentation [ci skip]. commit 1f50d39d463adc4ca3760ac30c260bc094c7d2b6 Author: Alan Garny Date: Sun Aug 23 12:40:16 2015 +0200 Slight update to the developer documentation [ci skip]. commit 52a75b351d6e2f8d2061d7bfff922eb1221f8af7 Author: David Brooks Date: Sun Aug 23 14:26:51 2015 +1200 Fix typo! commit 3b4806cc117621bbe8f78bb91e5b1f28a42a7a8e Merge: a2856f472 9e98fe8e7 Author: Alan Garny Date: Sat Aug 22 15:49:12 2015 +0200 Merge branch '\''master'\'' into issue684. commit a2856f472a1d93ccc16566ade036a33795f93a2e Author: Alan Garny Date: Sat Aug 22 15:47:30 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit bc20cbf2ba77631cf34ec3d08895260363a629a3 Author: Alan Garny Date: Sat Aug 22 15:43:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 9e98fe8e76df1ae8d8d1a97af620d5e4b42d3d92 Author: Alan Garny Date: Sat Aug 22 01:53:19 2015 +0200 Some minor cleaning up [ci skip]. commit 9b7df499a515e79e52483bbb89456388bafebd8d Merge: edf45594f acdabc28d Author: Alan Garny Date: Fri Aug 21 20:18:42 2015 +0200 Merge branch '\''master'\'' into issue684. commit acdabc28d8130fb98529edb3e5db86ce1aba5c4f Merge: 53c4310ec 91a32900b Author: Alan Garny Date: Fri Aug 21 20:10:22 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 53c4310ec35c3ea5b70ae8802f81db8a414bd56c Author: Alan Garny Date: Fri Aug 21 20:10:04 2015 +0200 Some minor cleaning up and refactoring [ci skip]. commit edf45594fd271c2f0229c37e884ced3b47ba2b06 Author: Alan Garny Date: Fri Aug 21 18:50:36 2015 +0200 Some minor cleaning up [ci skip]. commit ad7004a9e4c1c2e4fcd291d44be6ed7467e70a6a Author: Alan Garny Date: Fri Aug 21 18:42:16 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit b61fe414f3c815bbb3ae8e501877ab36efdd9bd0 Author: Alan Garny Date: Fri Aug 21 18:22:22 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit fe70991eb7cbed263575ba61f4cc18f880a7428c Author: Alan Garny Date: Fri Aug 21 17:08:36 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 21c9e67fc4e2bb66ad719eeef36e766cf1c1da72 Author: Alan Garny Date: Fri Aug 21 16:52:36 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 872799b988b6ccc5a16b2b1e2dbff8be2516986e Author: Alan Garny Date: Fri Aug 21 16:38:29 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 72021b317a35973ec67e810054ffc2f0384ebf84 Merge: 496851922 91a32900b Author: Alan Garny Date: Fri Aug 21 16:06:49 2015 +0200 Merge branch '\''master'\'' into issue684. commit 91a32900bcff80959d9b4d8e2a0eaf1c64aeb05b Author: Alan Garny Date: Fri Aug 21 16:06:37 2015 +0200 Single Cell view: cleaned up some DAE-related code [ci skip]. We used to explicitly check for the IDA solver. Thank god, we have only one DAE solver at the moment, but still… commit 4968519221a3c29f256afc2fe14da130e3802592 Author: Alan Garny Date: Fri Aug 21 15:45:45 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 2e3cb045e23088cf5851dbcab75ecf692be06804 Merge: 4eadad0af 9c6cebdd8 Author: Alan Garny Date: Fri Aug 21 13:57:54 2015 +0200 Merge branch '\''master'\'' into issue684. commit 9c6cebdd85c10af5f0a3fad9aead67c5e7f51d9c Author: Alan Garny Date: Fri Aug 21 13:57:23 2015 +0200 Some minor cleaning up [ci skip]. commit 8f8118406cc6cd05a3ae9bb06dc4168adf3af786 Author: Alan Garny Date: Fri Aug 21 13:20:25 2015 +0200 Single Cell view: fixed an issue with editing a model parameter making the GUI flash (closes #733). commit a4ad2b20061c108440e3dd7a0363c77b65ff1e68 Author: Alan Garny Date: Fri Aug 21 13:19:02 2015 +0200 Some minor cleaning up [ci skip]. commit 4eadad0af13aed572693c9bb1b23856c86694844 Merge: 5a4431197 558d5faf0 Author: Alan Garny Date: Thu Aug 20 15:05:24 2015 +0200 Merge branch '\''master'\'' into issue684. commit 5a4431197920556bb590a0476f092ee43e563bbd Author: Alan Garny Date: Thu Aug 20 15:05:16 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 558d5faf00e03bfc69d5722cf884d663b703b65c Author: Alan Garny Date: Thu Aug 20 14:57:31 2015 +0200 Some minor cleaning up [ci skip]. commit a84783b407f3579162e5642f9c88bb4f972fc56c Author: Alan Garny Date: Thu Aug 20 14:39:11 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit d6fdb56a56a8ca13ca090bd05a7dad8b4d800142 Author: Alan Garny Date: Thu Aug 20 14:31:39 2015 +0200 Slight update to the developer documentation following the release of Qt Creator 3.5.0 [ci skip]. commit 9166deea224280cfc017f3bf0300c3cd4509c7fb Author: Alan Garny Date: Thu Aug 20 14:12:45 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 47ff38808abc55d1ca1627e476a3d1e24e99fc91 Author: Alan Garny Date: Thu Aug 20 11:09:45 2015 +0200 Some minor cleaning up [ci skip]. commit b8261ecd40ea1465368e2f8ca2943cfa419fa8be Author: Alan Garny Date: Thu Aug 20 10:50:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 8117e18a952e05b1a9dc614081c6937567dc10ad Merge: c35dd440f 886424eb4 Author: David Brooks Date: Thu Aug 20 11:38:37 2015 +1200 Merge branch '\''master'\'' into libbsml commit 92cf1154820f733b04fecf8df84b1737efc0ac49 Author: Alan Garny Date: Wed Aug 19 17:25:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 9ee40a28501578e74da4bdc5fa9fc65765a4f1b3 Author: Alan Garny Date: Wed Aug 19 16:23:01 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 6f6a6fbf12918407fc5cca92c22f6b8800e8eb2e Author: Alan Garny Date: Wed Aug 19 15:22:27 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 886424eb4d59bc684c1e7c67a8c9a3d3bc5af53f Author: Alan Garny Date: Wed Aug 19 13:25:32 2015 +0200 CellML tools: exporting CellML 1.0 models should default to different name (closes #732) [ci skip]. commit 9a94b9abe9fe2deed23c677fd9c9eb400f9f4cea Author: Alan Garny Date: Wed Aug 19 13:23:21 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 6bd6fc3ce25d126385ce7baf9ce5cf44aca9ac59 Merge: c7d30ffdd ce4f8c55f Author: Alan Garny Date: Tue Aug 18 18:40:36 2015 +0200 Merge branch '\''master'\'' into issue684. commit ce4f8c55f0f47705928d75f3bf23f5c04f3365f4 Author: Alan Garny Date: Tue Aug 18 18:40:25 2015 +0200 Some minor refactoring. Created the fileTypes() method in the Core plugin to convert and return as a string some file types, using some MIME types, if needed. commit c7d30ffdd589235b2028a9c29767497aa88a7701 Author: Alan Garny Date: Tue Aug 18 17:21:04 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit f0b6fbbe9391902e5001f63cfe3bc8830278387d Merge: 0dc8c0dc3 c4ca384ab Author: Alan Garny Date: Tue Aug 18 17:17:18 2015 +0200 Merge branch '\''master'\'' into issue684. commit c4ca384ab1e67c57e40fd6fcdebfb514784adae6 Author: Alan Garny Date: Tue Aug 18 17:15:45 2015 +0200 Some minor refactoring. Created the fileTypes() method in the Core plugin to convert and return as a string some file types, using some MIME types, if needed. commit 6709a2e2e84ec31bf2fb4479b7aae0131ef5c218 Author: Alan Garny Date: Tue Aug 18 17:06:17 2015 +0200 Some minor cleaning up [ci skip]. commit 0dc8c0dc3e40d90a64e2732d827f29d249485ed3 Merge: b16088296 69eb990c4 Author: Alan Garny Date: Tue Aug 18 16:24:37 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML (#684) [ci skip]. commit 69eb990c4c025cd5f8fdb57c692e62d6d421bc4d Author: Alan Garny Date: Tue Aug 18 15:18:47 2015 +0200 Some minor cleaning up [ci skip]. commit b1608829637ae2dc3170e2b8b401b10e277baa3b Merge: 490db6d00 bb45bdc45 Author: Alan Garny Date: Tue Aug 18 15:15:53 2015 +0200 Merge branch '\''master'\'' into issue684. commit bb45bdc45e0695545006eaee5b3d12a7348007c6 Author: Alan Garny Date: Tue Aug 18 15:15:15 2015 +0200 CellML tools: exporting CellML 1.0 models should default to different name (closes #732). commit d28ae83a26e6d2a14420577ebf118be425d47b6b Author: Alan Garny Date: Tue Aug 18 13:37:46 2015 +0200 Some minor cleaning up [ci skip]. commit 69e52a40bb3f32258fcbbd3043564dde04d40299 Author: Alan Garny Date: Tue Aug 18 13:34:28 2015 +0200 Some minor cleaning up [ci skip]. commit 81e117f99ac98c5264adcd4969bb1742c93318e1 Author: Alan Garny Date: Tue Aug 18 11:22:48 2015 +0200 Oops, forgot to import/export Core::shortVersion() and Core::version() on Windows [ci skip]. commit c35dd440fce35ea830d91cb8124a832be464fe12 Author: David Brooks Date: Tue Aug 18 10:42:46 2015 +1200 Tidy up. commit f5f5b4f70e6e81b58fa053769bc90ddbec920d95 Author: David Brooks Date: Tue Aug 18 10:42:10 2015 +1200 Use file name as the recording'\''s URI; unit URIs are based in the model used. commit f64c129a37b2ec69e3db9fa04ba5d2304598a1b9 Author: David Brooks Date: Tue Aug 18 10:40:10 2015 +1200 Give recording'\''s provenance as a comment. commit f4c7c45ad87a10bb758062fe9ff1d9c2d4ca5848 Author: David Brooks Date: Tue Aug 18 09:24:46 2015 +1200 Use updated DataStore interface. commit b24b5ab9a1d63a1d5d8a42029f63d86f542cddae Merge: b6fe50816 652a975f0 Author: David Brooks Date: Tue Aug 18 08:53:13 2015 +1200 Merge branch '\''master'\'' into libbsml commit 652a975f0a7c6c5854e6377b10dcda99427084ea Author: Alan Garny Date: Mon Aug 17 19:48:50 2015 +0200 Slight updates to the user documentation [ci skip]. commit 9de2a01098cec192ccd4a70d78a7fb62a45523d7 Merge: 04829e5b0 7a65f490e Author: Alan Garny Date: Mon Aug 17 19:30:30 2015 +0200 Merge pull request #731 from opencor/issue730 Solver: removed the CoreSolver plugin and moved its relevant classes to SolverInterface (closes #730). commit 7a65f490e9d1755e4979f04954d16b99e8e65f74 Author: Alan Garny Date: Mon Aug 17 18:51:41 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface (#730). commit 31dc95c6743681dfdcba7c26bedc5a7585dd3629 Author: Alan Garny Date: Mon Aug 17 18:45:14 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface (#730). commit d30c74a862a8045654c96fb9cc817c7759764317 Author: Alan Garny Date: Mon Aug 17 18:44:11 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface (#730). commit 04829e5b0ea86078906ad40288bfe31708c11466 Author: Alan Garny Date: Mon Aug 17 17:50:41 2015 +0200 Some minor cleaning up [ci skip]. commit 3145a071431474bb063392176c1775dc9010412e Author: Alan Garny Date: Mon Aug 17 17:16:15 2015 +0200 Some minor cleaning up [ci skip]. commit c2fe66c0acf30d2e13f94d93a3cdae56915faac3 Merge: e2c7a2ece 1f0f46411 Author: Alan Garny Date: Mon Aug 17 17:01:00 2015 +0200 Merge pull request #729 from opencor/issue728 Data store: removed the CoreDataStore plugin and moved the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface (closes #728). commit 1f0f4641141a17eb68bdb482183fe2b8821fa8e2 Author: Alan Garny Date: Mon Aug 17 16:31:25 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface (#728). commit 98fbbe4ffab4c4ea7e3f160be80649c6f02f5080 Author: Alan Garny Date: Mon Aug 17 16:26:43 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface (#728). commit c2db257429a9d35a6c6b6b6ff4f8e6acedbcf386 Author: Alan Garny Date: Mon Aug 17 16:22:06 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface (#728). commit e2c7a2ecee314d78d2755bcc2cf7b3a0a7ad87ef Author: Alan Garny Date: Mon Aug 17 15:34:02 2015 +0200 Some minor cleaning up [ci skip]. commit 3bc37e6a5410430868028a6260a074d34df08f54 Author: Alan Garny Date: Mon Aug 17 14:49:48 2015 +0200 Made the (short) version of OpenCOR available to plugins (closes #727). commit d5e4f4588609618c55d8dbe633e910606293d538 Author: Alan Garny Date: Mon Aug 17 13:30:09 2015 +0200 Data store interface: replaced dataStoreExporterInstance() with new/deleteDataStoreExporterInstance() (closes #717). Allow an implementation of deleteDataStoreExporterInstance() to modify a plugin’s properties. commit b6fe50816b84390fbcc1efab8c4e4ef263040f71 Author: David Brooks Date: Thu Aug 13 11:37:46 2015 +1200 We don'\''t yet have any tests defined for BioSignalMLAPI so don'\''t try to build them... commit c643cc53b436d7939c3bca03a924615a29a5a15c Author: David Brooks Date: Wed Aug 12 14:47:42 2015 +1200 Add BioSignalML binaries for 64-bit release mode builds. commit 3ee2119e65ff09a085a584ed63687bf4cbb0dc40 Author: David Brooks Date: Wed Aug 12 14:46:06 2015 +1200 Add missing export header; support both Visual C (WIN32) and gcc in the one file. commit c526000913ad10d0a8508db6c927a3efb399b14a Author: David Brooks Date: Tue Aug 11 21:18:13 2015 +1200 Improve display of filename; ensure dialog has keyboard focus after entering file name. commit ef5e57f980dd51b9ad58333a589180d5f67db7bc Author: David Brooks Date: Tue Aug 11 18:22:42 2015 +1200 Tidy up. commit f6b26692c2b099666772a3d9e69f42c70d99f2ab Author: David Brooks Date: Tue Aug 11 18:21:55 2015 +1200 Save author in BioSignalML recording. commit ab1fcff5f0bf3adba13fef6e84ec6666564532a3 Author: David Brooks Date: Tue Aug 11 16:44:06 2015 +1200 Updates to prompts. commit b71dd6d8f375ad31c90bd9dd2f27257d0681ac04 Author: David Brooks Date: Tue Aug 11 16:43:15 2015 +1200 Tidy up deletion of exporters. commit 5fcefe68928d17b4d62f491fd74a9a5bc5d76e0a Author: David Brooks Date: Tue Aug 11 16:42:19 2015 +1200 Add BioSignalMLAPI plugin to retrieve pre-built libraries. commit ac06b35cf2e169920b0c40d52900fc47a2974d36 Author: David Brooks Date: Tue Aug 11 16:38:30 2015 +1200 Allow location of binary file downloads to be specified. commit b70f9b3fe31a2950ee0ab682a358571e098fa3cb Merge: 2c853aab4 8dcb719ae Author: David Brooks Date: Tue Aug 11 09:10:34 2015 +1200 Merge branch '\''master'\'' into libbsml commit 8dcb719ae62594b80fca3fc9a0c0ee5517f11a6c Author: Alan Garny Date: Mon Aug 10 14:42:03 2015 +0200 Some minor cleaning up [ci skip]. commit 1b1367bee14e4e2f49e3b4c381f590ab5db8b59d Author: Alan Garny Date: Mon Aug 10 14:41:37 2015 +0200 Data store interface and CoreDataStore plugin: made it easier to delete an instance of a data store exporter that has an id (closes #726). commit 60a6b7045d156037d3568f5a5b06aa47c0c16f17 Merge: 89212aafa dd7f7171c Author: Alan Garny Date: Mon Aug 10 13:56:06 2015 +0200 Merge pull request #725 from opencor/issue723 SUNDIALS: upgraded to version 2.6.2 (closes #723). commit dd7f7171c2305a9b29f6eef4f6bd6dc8ca58a9ee Author: Alan Garny Date: Mon Aug 10 13:32:04 2015 +0200 SUNDIALS: some work towards upgrading to version 2.6.2 (#723). commit 469a409104883d2b72e7914ad8dcdbd29900dab0 Author: Alan Garny Date: Mon Aug 10 13:17:13 2015 +0200 SUNDIALS: some work towards upgrading to version 2.6.2 (#723) [ci skip]. commit 2c853aab4a812609ed0ba8265865911e356058db Merge: b80567914 89212aafa Author: David Brooks Date: Mon Aug 10 22:46:40 2015 +1200 Merge branch '\''master'\'' into libbsml commit 89212aafad9ca699f8f13f02801d9283b4314e8e Merge: 0e517d5b0 a3c8a9e3e Author: Alan Garny Date: Mon Aug 10 11:54:04 2015 +0200 Merge pull request #724 from opencor/issue722 libgit2: upgraded to version 0.23.1 (closes #722). commit a3c8a9e3ef9c0fd6626d67bd3ffada26452df487 Author: Alan Garny Date: Mon Aug 10 11:51:51 2015 +0200 libgit2: some work towards upgrading to version 0.23.1 (#722). commit d0b1c1468e1b43e5ee379402b030be1457c7b114 Author: Alan Garny Date: Mon Aug 10 11:37:56 2015 +0200 libgit2: some work towards upgrading to version 0.23.1 (#722) [ci skip]. commit 490db6d000fc52a8a6005d243f7d776cdf580a4a Merge: 1f96e5f72 0e517d5b0 Author: Alan Garny Date: Mon Aug 10 10:52:16 2015 +0200 Merge branch '\''master'\'' into issue684. commit 0e517d5b052b99805650edb17fa43b5c4e17079d Author: Alan Garny Date: Sun Aug 9 17:07:23 2015 +0200 Single Cell view: reverted the fact that direct painting should occur immediately (see issue #671 and #710) [ci skip]. commit 0158d95aa298386b3358ff0747bfc4c7fa04b6f8 Author: Alan Garny Date: Sun Aug 9 14:58:04 2015 +0200 New snapshots. commit 067530b4917dd1a6a81f00ac4edba67ca63999ec Author: Alan Garny Date: Sun Aug 9 14:41:22 2015 +0200 Some minor cleaning up [ci skip]. Replaced a dynamic_cast with a qobject_cast. commit 283716391a30fd6655edd1a82a2cf7b2ae1ce988 Author: Alan Garny Date: Sun Aug 9 14:07:44 2015 +0200 Some minor cleaning up [ci skip]. Replaced some dynamic_cast’s with some qobject_cast’s. commit fd2e1250f3adbf17788e616d60abb115dbb591df Author: Alan Garny Date: Sun Aug 9 13:45:03 2015 +0200 Some minor cleaning up [ci skip]. commit 93fe8d43c535e17da40488fb4a16c485229d000e Author: Alan Garny Date: Sun Aug 9 13:17:09 2015 +0200 Some minor cleaning up related to issue #721 [ci skip]. commit d913f5d44126edbcc76a30be4f39abb3e558930f Author: Alan Garny Date: Sun Aug 9 13:10:37 2015 +0200 Some minor cleaning up [ci skip]. commit 6e398fb88488c3ea605dc8d005a2bb3e2d78f09f Author: Alan Garny Date: Sun Aug 9 13:01:55 2015 +0200 CellML-based editing view: fixed an issue that prevented the creation of a new CellML file on Linux (closes #721). commit ec61cae7edf628c5f3392a190760660f549cd7a5 Author: Alan Garny Date: Sun Aug 9 12:30:24 2015 +0200 Some minor cleaning up [ci skip]. commit c8316db7f7b057aacc4956fa6d6ba1ef65ae06cf Author: Alan Garny Date: Sun Aug 9 12:14:59 2015 +0200 Some minor cleaning up [ci skip]. Removed some unneeded const_cast’s. commit 1ccb534bd47f3d0d47291948e292d5c9585c13b2 Author: Alan Garny Date: Sat Aug 8 21:43:51 2015 +0200 QScintillaWidget: show special Unicode characters (closes #709). commit 3d0a353aad7da63ee962067a6a17e51ed8ade939 Author: Alan Garny Date: Sat Aug 8 14:07:24 2015 +0200 CellML Text view: fixed a problem with the wrong syntax highlighting being used in a particular case (closes #720). commit b8056791405999623b2a6b9195723107b25e88cf Author: David Brooks Date: Sat Aug 8 12:51:56 2015 +1200 First version of "Save as BioSignalML" is almost all working. commit 18bad9f2b36dc53d48afa8950de9be2e213c39fc Author: Alan Garny Date: Fri Aug 7 18:55:07 2015 +0200 Some minor cleaning up [ci skip]. commit affef5e73f7c5b7a8ec48ddd763838fcb26af119 Merge: 84dcc9e07 4c2009bd6 Author: Alan Garny Date: Fri Aug 7 15:30:07 2015 +0200 Merge pull request #719 from opencor/issue714 CellML Text view: fixed an issue with pasting some Unicode characters potentially crashing OpenCOR (closes #714). commit 4c2009bd6afd1871f99a24178fa7966248630dc2 Author: Alan Garny Date: Fri Aug 7 15:24:16 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714). commit 41990afe8f594bd4b46059e35ebfef699a4db7d3 Author: Alan Garny Date: Fri Aug 7 15:22:17 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714). commit 9f491338e98192e3daaa57f77e507874567491c9 Author: Alan Garny Date: Fri Aug 7 15:05:16 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714) [ci skip]. commit 31123cbea0555a839449b36e952e5d26447bfcda Author: Alan Garny Date: Fri Aug 7 13:00:02 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714) [ci skip]. commit 0bb0051a995639570cb8b1abf1c7cb7c54e74b8f Author: Alan Garny Date: Fri Aug 7 12:44:54 2015 +0200 Some minor cleaning up [ci skip]. commit 46451604779f8a91057e77e8bef2be1f92cf3a4a Author: Alan Garny Date: Fri Aug 7 11:49:33 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714) [ci skip]. commit b69b891c887ba7f629cce61362bd54d569cc742e Author: Alan Garny Date: Fri Aug 7 11:22:56 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714) [ci skip]. commit bb1e5f816ed85364a33da1447a2c4d7641979544 Author: Alan Garny Date: Fri Aug 7 11:06:30 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR (#714) [ci skip]. commit 84dcc9e0738eb45684ffe7a29df83513412c3dc6 Author: Alan Garny Date: Fri Aug 7 10:55:13 2015 +0200 Some minor cleaning up [ci skip]. commit 068adaa8240c513c85f544d325eceea1fe02db62 Author: David Brooks Date: Fri Aug 7 12:10:23 2015 +1200 `PluginInfo` needs the plugin'\''s category, not the plugin'\''s name. commit 687cc3adb80449d6ff4c4714e590384f3f44b1fa Merge: 30c0f90f3 ccb72d1cc Author: David Brooks Date: Fri Aug 7 12:08:26 2015 +1200 Merge branch '\''master'\'' into libbsml commit ccb72d1cc38e7419c0d6ef235f91b01cde5075d0 Author: Alan Garny Date: Fri Aug 7 00:05:33 2015 +0200 Some minor cleaning up [ci skip]. commit e47f1752c81a92e74d3408d90c440127fb5b61ed Author: Alan Garny Date: Thu Aug 6 23:40:45 2015 +0200 Some minor cleaning up [ci skip]. commit 60cde4dfbe5b5a1d4e0b1b379a51121d5de033e7 Merge: ee768ff10 3db0818d3 Author: Alan Garny Date: Thu Aug 6 15:12:05 2015 +0200 Merge pull request #718 from opencor/issue715 Fixed an issue with pre-built OS X libraries having hard-coded paths (closes #715). commit 3db0818d3bff2392860f793769370a336c547570 Author: Alan Garny Date: Thu Aug 6 14:50:18 2015 +0200 Some work on pre-built OS X libraries have hard-coded paths (#715). commit d12a4dd557eabfb095eb2ec28f009ac2887225eb Author: Alan Garny Date: Thu Aug 6 14:11:54 2015 +0200 Some work on pre-built OS X libraries have hard-coded paths (#715). commit ee768ff10442557c384ce3809f2b46db910258d8 Author: Alan Garny Date: Thu Aug 6 12:06:23 2015 +0200 Some minor cleaning up [ci skip]. commit e5389f9bd3a7942ddce8bd24c271e37b9c19067d Author: Alan Garny Date: Thu Aug 6 11:42:50 2015 +0200 Travis CI: some minor cleaning up. Moved down a bit where we set PROJECT_BUILD_DIR so that when we do, we know that the build will go ahead (i.e. no more risk of getting a FATAL_ERROR message. commit 2bed31eca0871548bd3b64281cd8e9361689c83e Author: Alan Garny Date: Thu Aug 6 10:55:07 2015 +0200 Travis CI: some minor cleaning up. commit 6516b254a22834d3ac023ae5287e18c8c0bee5e5 Author: Alan Garny Date: Thu Aug 6 10:35:11 2015 +0200 Travis CI: reverting the previous commit. Argh, I had forgotten that the PPA we use on Travis CI doesn’t include the ICU libraries… commit 337e79ff18de4cc018b2cfecaa62bc1bfe36345c Author: Alan Garny Date: Thu Aug 6 10:15:31 2015 +0200 Travis CI: some minor cleaning up. We can use Qt 5.4.2 on Linux on Travis CI, so no need to use an older version of the ICU files. commit 68b07455e7aeba2e2934f9231aed7a684d727dd9 Author: Alan Garny Date: Thu Aug 6 09:41:22 2015 +0200 Data store interface: replaced dataStoreExporterInstance() with new/deleteDataStoreExporterInstance() (closes #717). commit da4b8c2358ed3c7338a90258e3e50e64496b1523 Author: Alan Garny Date: Thu Aug 6 09:38:33 2015 +0200 Some minor cleaning up [ci skip]. commit 7367f0055287ec2b83a25d5780e5b54c5e89e933 Author: Alan Garny Date: Thu Aug 6 08:39:20 2015 +0200 Plugins window: fixed an issue with a plugin with an unknown category resulting in a crash (closes #716). commit 30c0f90f3d311357684a71727f129feaae5df3fd Merge: 9000cde82 61a64416a Author: David Brooks Date: Thu Aug 6 15:10:11 2015 +1200 Merge branch '\''master'\'' into libbsml commit 61a64416a60c42ce41849d9fbf0fd1f916ebabb3 Author: Alan Garny Date: Thu Aug 6 00:30:07 2015 +0200 CSV data store: made sure that whoever uses a data store explorer instance actually frees it afterwards (closes #713). commit 07eb5d9738652a86d16a32a57e0a8af8400491ba Author: Alan Garny Date: Thu Aug 6 00:26:49 2015 +0200 Some minor cleaning up [ci skip]. commit 9d0f130249164905953da5b4711a1e5f970ae320 Author: Alan Garny Date: Thu Aug 6 00:10:29 2015 +0200 CSV data store: made sure that whoever uses a data store explorer instance actually frees it afterwards (closes #713). commit 6432ed2216579cb0a1735ebfb72c8033fbb81ead Author: Alan Garny Date: Wed Aug 5 23:43:21 2015 +0200 Some minor cleaning up [ci skip]. commit 6d28084f7e88adb4d9407868cbe1ec6d279f2856 Author: Alan Garny Date: Wed Aug 5 15:44:34 2015 +0200 Make sure that we can, once again, test things from within Qt Creator, Xcode, as well as from the command line [ci skip]. commit 92e0639ced7469af1f437c4836ec1f90b0374a6d Author: Alan Garny Date: Wed Aug 5 09:50:35 2015 +0200 Make sure that we can, once again, test things from within Qt Creator [ci skip]. commit 9000cde8224a130c5fdea3eafc9b2c5e39e66ca8 Author: David Brooks Date: Wed Aug 5 16:24:47 2015 +1200 Add a user dialog to capture BioSignalML metadata. commit 3ac4c603dc62aac7bdac9beb4ec59e7c094267ef Author: David Brooks Date: Wed Aug 5 16:23:31 2015 +1200 Use correct method names when getting a data store'\''s `uri` and `id`. commit 316221238d493471f1a2cbea43e2dd56cb86d6c5 Author: Alan Garny Date: Tue Aug 4 22:05:48 2015 +0200 Some minor cleaning up [ci skip]. commit d957b44cd3b7ab1817ab49a0ca7014f5449243bb Author: Alan Garny Date: Tue Aug 4 21:04:07 2015 +0200 Make sure that we can, once again, test things from within Qt Creator [ci skip]. After some work on getting things to work with Xcode, we cleaned some CMake code up and well... we shouldn'\''t have! commit d8d8c082fd0b9bf16ad2284d48e484d082a45e54 Author: Alan Garny Date: Tue Aug 4 15:20:26 2015 +0200 Slight update to the developer documentation [ci skip]. commit a24c364cb7b1b0a18639ea219da09498b0214c15 Merge: 8811b1e18 7d21505fc Author: Alan Garny Date: Tue Aug 4 10:48:46 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7d21505fc17706fa3dcc5b74f5faefc2071654d7 Author: Alan Garny Date: Tue Aug 4 10:48:20 2015 +0200 Slight update to the developer documentation [ci skip]. commit 8811b1e184040125160340cc966a824cd8c8fe9e Merge: 23763e489 b38834cfb Author: Alan Garny Date: Tue Aug 4 10:18:41 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit b38834cfb3f056c483b864b9f8a2a2863f2fff73 Author: Alan Garny Date: Tue Aug 4 10:11:41 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710). commit 34833a4936da45008008e5fc5610d53b950b036a Author: Alan Garny Date: Tue Aug 4 10:03:06 2015 +0200 Travis CI: trying to understand why the release version doesn'\''t work on Linux. commit 30966c4954237b6e196496da737304f4438bb818 Author: Alan Garny Date: Tue Aug 4 10:01:47 2015 +0200 Travis CI: trying to understand why the release version doesn'\''t work on Linux. commit c40d1ffe90755f4f2db6a693cdb99985d2e27f29 Author: Alan Garny Date: Tue Aug 4 10:00:29 2015 +0200 Travis CI: trying to understand why the release version doesn'\''t work on Linux. commit b725912a1270ac588961cf6294417bf1ba496ba2 Author: Alan Garny Date: Mon Aug 3 19:39:59 2015 +0200 Create both a Users and Developers mailing list (closes #711). commit 54df596bd732aa508b3ff76061dd83b676fd1a46 Author: Alan Garny Date: Mon Aug 3 19:13:18 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710). commit 5cd4d31c6035d1e9bb5c9ae46ec10d901301e8dc Author: Alan Garny Date: Mon Aug 3 18:52:40 2015 +0200 Travis CI: trying to understand why the release version doesn'\''t work on Linux. commit f453cb3653c3b35e87072a6ad86d5006b06acacb Author: Alan Garny Date: Mon Aug 3 18:24:48 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710). commit d9babfa47c4c901cd3908d10c9aad3b805e311f2 Author: Alan Garny Date: Mon Aug 3 18:22:06 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710). commit 74d4ff8cffa54e4db80b26da648f7c2f0353f132 Author: Alan Garny Date: Mon Aug 3 18:18:04 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710). commit e241adf3e079d1ff439c3b0bfd7330832c01afde Merge: 9cf0ec734 e5ee5508b Author: Alan Garny Date: Mon Aug 3 17:02:11 2015 +0200 Merge pull request #712 from opencor/issue710 Revert to Qt 5.4.2 (closes #710). commit e5ee5508b68b9285b1d66c81b342265aa0ceb10c Author: Alan Garny Date: Mon Aug 3 16:50:51 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit 05a67e3c388a5a256c7b603c6f9bcdd536ef2ea9 Author: Alan Garny Date: Mon Aug 3 16:48:49 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit 891ca66eaff314bd366b23953e67ebab1e988412 Author: Alan Garny Date: Mon Aug 3 14:16:52 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit 3f71c7baef347ab3eb57629461eea6e02f8437a0 Author: Alan Garny Date: Mon Aug 3 14:07:38 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit c0deea06931ffb88a914d7f6d8231e7ad54a0ede Author: Alan Garny Date: Mon Aug 3 14:00:46 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit 0fd0aed737a0279c3ab819ec5645eac19c74eb21 Author: Alan Garny Date: Mon Aug 3 13:50:51 2015 +0200 Some work towards reverting to Qt 5.4.2 (#710) [ci skip]. commit 9cf0ec73472e563c1bd2d8a9702220d95c8f4c29 Author: Alan Garny Date: Mon Aug 3 10:28:43 2015 +0200 Slight update to the downloads page [ci skip]. Added a message to warn people about using the latest snapshot. commit bddf5f534a4e55a842c9a32a0fbf121c91fded39 Author: Alan Garny Date: Mon Aug 3 09:55:18 2015 +0200 Slight update to the downloads page [ci skip]. Put the latest snapshot ‘below’ the latest official release since the latest snapshot is not yet in a state where we would recommend people using it. commit 23763e489c508eb04e327689016f10fadb33aecf Merge: 5c2920c65 555bda065 Author: Alan Garny Date: Fri Jul 31 20:48:50 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 1f96e5f72e866317fa6c57faa25d29a6c7a65054 Merge: 5b7b76dea 555bda065 Author: Alan Garny Date: Fri Jul 31 14:04:38 2015 +0200 Merge branch '\''master'\'' into issue684. commit 555bda06575b820c65af5398fa4eff763130c039 Author: Alan Garny Date: Fri Jul 31 13:44:39 2015 +0200 New snapshots. commit cda3a65368522c5783356bf9ad0bf1bad834059c Merge: 06259b417 32ff81915 Author: Alan Garny Date: Fri Jul 31 13:36:30 2015 +0200 Merge pull request #708 from opencor/issue707 Qwt plugin: use the latest revision from the Qwt 6.1 branch (closes #707). commit 32ff81915a563cb25b97ea36e5a83f7b9991a34e Author: Alan Garny Date: Fri Jul 31 13:14:07 2015 +0200 Qwt plugin: use the latest revision from the Qwt 6.1 branch (#707). commit 5f9f2acd725fac1856ebd613087dc4717da761af Author: Alan Garny Date: Fri Jul 31 12:58:28 2015 +0200 Qwt plugin: some work towards using the latest revision from the Qwt 6.1 branch (#707) [ci skip]. commit 5c2920c65994430225cd9fe7f1e5cef2e4e81340 Merge: 5ed71b223 06259b417 Author: Alan Garny Date: Thu Jul 30 20:15:02 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 5b7b76dea837b16fc2a2d1139a45c5b61d61f736 Merge: 31ea5be5c 06259b417 Author: Alan Garny Date: Thu Jul 30 15:29:22 2015 +0200 Merge branch '\''master'\'' into issue684. commit 06259b4172f019bfd0b57c45965b2fbd2296c9bb Author: Alan Garny Date: Thu Jul 30 15:21:32 2015 +0200 CellML API: updated to the latest snapshot (closes #703). commit 34dbcf0850218be624a724307b917d736bea2075 Author: Alan Garny Date: Thu Jul 30 11:21:26 2015 +0200 CellML support: only fully instantiate imports if needed [ci skip]. commit 79b8de6c3b21b23a5556ecc44abb79e4d0ffa875 Author: David Brooks Date: Thu Jul 30 15:18:31 2015 +1200 Changes for latest release from AG. commit 857f1b266318baa32be839724acef112b5a934ea Merge: b89457e32 5c93b5f00 Author: David Brooks Date: Thu Jul 30 14:41:03 2015 +1200 Merge branch '\''master'\'' into libbsml commit 5c93b5f00c34c1e538b683642432a440d248de8a Author: Alan Garny Date: Wed Jul 29 17:47:10 2015 +0200 Minor improvement to the way we show our busy widget [ci skip]. commit 467f5418702b3154863bcb89622b121628bf5615 Author: Alan Garny Date: Wed Jul 29 11:47:34 2015 +0200 Central widget: make sure we hide our busy widget if a remote open file fails [ci skip]. commit a5be294b0465384a6eca18057767cc806f3cca01 Author: Alan Garny Date: Wed Jul 29 11:30:19 2015 +0200 CMake: properly support CMake 3.2 and above [ci skip]. commit 107805877daa6c9a40c8e3f6af933ac910de9a22 Author: Alan Garny Date: Wed Jul 29 10:54:08 2015 +0200 Some minor cleaning up [ci skip]. commit 5c12883ac7efb6543994e71f61c825a88dc15061 Author: Alan Garny Date: Wed Jul 29 10:24:35 2015 +0200 Some minor cleaning up [ci skip]. commit 5ed71b2238efd0c2aa8752d24764057d320def50 Author: Alan Garny Date: Wed Jul 29 00:04:20 2015 +0200 Slight update to the developer documentation now that we require CMake 3.2 or above [ci skip]. commit dde4389d90d0a6cd8f06cbd1fabe8153a8557aec Author: Alan Garny Date: Tue Jul 28 18:46:52 2015 +0200 CMake: quiet some EXECUTE_PROCESS calls. This can, for example, be useful when using ccmake (i.e. no more ‘messy’ output). commit 8748bb68328729c959118babcc5604d864d2705c Author: Alan Garny Date: Tue Jul 28 18:32:40 2015 +0200 Travis CI: use CMake 3.3.0 on Linux now that it is available. commit a43d605b9b13924c9954187f4a9fd57be821787d Author: Alan Garny Date: Tue Jul 28 18:32:11 2015 +0200 CMake: properly support CMake 3.2 and above [ci skip]. commit b95fb197f74a904473467539d156e09d15640d90 Author: Alan Garny Date: Tue Jul 28 17:26:23 2015 +0200 CMake: show some information messages only when requested [ci skip]. commit 883211e5a4ff9e7540ecdd467c28ead2d5f2fe16 Author: Alan Garny Date: Tue Jul 28 17:15:22 2015 +0200 CMake: hide some Qt-related variables (useful when using ccmake) [ci skip]. commit 589e42103fa1af57c3c26dfabf77c211481480e3 Author: Alan Garny Date: Tue Jul 28 15:59:32 2015 +0200 Some minor cleaning up [ci skip]. commit 4c3cab096c139994e33acdbcd332a0e786f074f5 Author: Alan Garny Date: Tue Jul 28 15:42:01 2015 +0200 CMake: cleaned up a bit the way we generate languages files [ci skip]. commit 31ea5be5cf6b8699e966e8f792a87ad2b6d170a3 Merge: 68b635fa7 6f98c6880 Author: Alan Garny Date: Mon Jul 27 13:52:37 2015 +0200 Merge branch '\''master'\'' into issue684 commit 6f98c6880e4f41e082dc2f46b5626351ceaaecfa Author: Alan Garny Date: Mon Jul 27 13:50:39 2015 +0200 Some further work on adding a SED-ML Support plugin (#686). commit 7a889e97088fb2d1a4ea3ab2cc2a5c863e441e1d Author: Alan Garny Date: Mon Jul 27 13:44:50 2015 +0200 SEDML API: prevent some warnings on Windows when using the SED-ML API [ci skip]. commit 35959dbf3b44c1c8c02f6ac46d0d48093678697b Author: Alan Garny Date: Mon Jul 27 13:43:51 2015 +0200 Some minor cleaning up [ci skip]. commit 68b635fa79af8c5b80dedffc72881f670ee7f116 Author: Alan Garny Date: Mon Jul 27 13:39:42 2015 +0200 Merge branch '\''master'\'' into issue684 commit c3123ea936819eb35d0fb05b891099702752510b Merge: 2ffa97505 5a307c752 Author: Alan Garny Date: Mon Jul 27 13:32:35 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 967e992cc8462eed683948d891d9b4d609724f23 Author: Alan Garny Date: Mon Jul 27 10:22:58 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 5a307c752f3773747fe1b6bd3cc7bb1b107b1aa8 Author: Alan Garny Date: Sun Jul 26 19:45:10 2015 +0200 Some minor cleaning up [ci skip]. commit 665e0ec0f886caa083bf6db8345345d364c63679 Author: Alan Garny Date: Sun Jul 26 18:23:31 2015 +0200 Some minor cleaning up [ci skip]. commit cbfb745022559d7e10f01bf57472f50c8be904e8 Author: Alan Garny Date: Sun Jul 26 17:05:24 2015 +0200 Some minor cleaning up [ci skip]. commit 2ffa97505379b65f506a9df05cbd587268340d93 Merge: cf2408e52 a30b0c4af Author: Alan Garny Date: Sun Jul 26 15:42:41 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit a30b0c4af4d211496992450e5b925332a62b21c8 Author: Alan Garny Date: Sun Jul 26 15:37:55 2015 +0200 Some minor cleaning up [ci skip]. commit ea2d79140646e490d6cf2a1a6b0f86ab60ad87b5 Author: Alan Garny Date: Sun Jul 26 15:35:08 2015 +0200 Some minor cleaning up [ci skip]. commit a1d0183d1be108e6d292a840afe12580cee03bf2 Merge: 6f81a355b d53fb7220 Author: Alan Garny Date: Sun Jul 26 15:23:46 2015 +0200 Merged from master. commit cf2408e52e64944053a4bee4dd17bd662cc571bd Merge: a330c55df d53fb7220 Author: Alan Garny Date: Sun Jul 26 15:20:54 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit d53fb7220a59441f899b55979d7cfe7979968537 Merge: 8b27681a9 f112d1353 Author: Alan Garny Date: Sun Jul 26 15:18:47 2015 +0200 Merge pull request #700 from opencor/issues698-699 Plugins: don'\''t rely on an enum to specify the category of a plugin (closes #698). LLVM: upgraded to version 3.6.2 (closes #699). commit f112d1353903d9947396905d7cc4951f8eda0cad Author: Alan Garny Date: Sun Jul 26 14:56:02 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin (#698). commit a330c55dfcad6ee658c04a95650143cd86e18e11 Merge: 6e19d0515 8b27681a9 Author: Alan Garny Date: Sun Jul 26 12:41:02 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3a2df1fb1ee2434e8174de4c1afaf1365d0e03f8 Author: Alan Garny Date: Sun Jul 26 12:29:51 2015 +0200 LLVM: some work on upgrading to version 3.6.2 (#699) [ci skip]. commit e0702e491658bd5da2254cdc94d85a51924425c5 Author: Alan Garny Date: Sat Jul 25 20:23:10 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin (#698) [ci skip]. commit 4ed039adc63c0b6759dfd2214731ee794a0c285a Author: Alan Garny Date: Sat Jul 25 20:21:15 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin (#698) [ci skip]. commit 45b91a31445b0b98d5fa0291a1682928ce99d230 Author: Alan Garny Date: Sat Jul 25 18:51:14 2015 +0200 LLVM: some work on upgrading to version 3.6.2 (#699) [ci skip]. commit 8b27681a96d0ed6504bb7eb5dfed503fe9528277 Author: Alan Garny Date: Sat Jul 25 13:33:39 2015 +0200 Some minor cleaning up [ci skip]. commit 6f81a355b8e421204717b707c054d811fa51fc24 Author: Alan Garny Date: Sat Jul 25 12:30:33 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 1917b56eff3237db26a2817e323925f3bd81b064 Merge: 8a0752de9 385bea219 Author: Alan Garny Date: Sat Jul 25 12:24:19 2015 +0200 Merge branch '\''master'\'' into issue684 commit 6e19d0515d5ea1164acd8cb74cc30937d951dd2b Merge: e977229f1 385bea219 Author: Alan Garny Date: Sat Jul 25 12:21:17 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 385bea2190ceae1787a7f798088b3eb9b48cb555 Merge: 1ab466401 e706c0bfb Author: Alan Garny Date: Sat Jul 25 12:19:44 2015 +0200 Merge pull request #697 from opencor/issue690 PMR window: use gzip compression to retrieve data from the PMR (closes #690). commit e706c0bfb51d94d3274fa1d4edc7b581db828b66 Author: Alan Garny Date: Sat Jul 25 11:57:19 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690). commit b1a7e19a2d719e31e0be0b4053a8a70a9724c0ff Author: Alan Garny Date: Sat Jul 25 11:55:46 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690). commit 56cc6cada66a52e7a3599146d71ce814670e4721 Author: Alan Garny Date: Sat Jul 25 11:32:49 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690) [ci skip]. commit f50b5b71687de1c41de425d497d24d255ac8da5b Author: Alan Garny Date: Sat Jul 25 10:20:57 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690) [ci skip]. commit bd27579efe566ae462fa2fe0be9ba8589812873a Author: Alan Garny Date: Sat Jul 25 10:17:05 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690) [ci skip]. commit 6f2c975380268ac9e2df3380feff5d01c654286c Merge: fe3e36680 1ab466401 Author: Alan Garny Date: Sat Jul 25 03:09:25 2015 +0200 Merged master [ci skip]. commit e977229f1207d217e8b4df0615b08755b2dfd513 Merge: 7ea95c39e 1ab466401 Author: Alan Garny Date: Sat Jul 25 02:50:35 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 1ab4664012d11651b3a33fea819e9f6259629fc5 Merge: b110ca1a6 5b6d555c4 Author: Alan Garny Date: Sat Jul 25 02:48:22 2015 +0200 Merge pull request #696 from opencor/issue695 Added a zlib plugin (closes #695). commit 5b6d555c43231364a04458847ec97cfb086923d9 Author: Alan Garny Date: Sat Jul 25 02:26:34 2015 +0200 Some work on adding a zlib plugin (#695). commit d55a1d055a07c4d60f3f3833e91954b1cdf621dd Author: Alan Garny Date: Sat Jul 25 02:12:18 2015 +0200 Some work on adding a zlib plugin (#695) [ci skip]. commit bec73fad5371e015acca4db5bd9278cc57efb84c Author: Alan Garny Date: Sat Jul 25 02:06:23 2015 +0200 Some work on adding a zlib plugin (#695) [ci skip]. commit 77dd2e6f348a3e340fb58ed26fbcc614549069a0 Merge: 42e825894 b110ca1a6 Author: Alan Garny Date: Sat Jul 25 01:54:13 2015 +0200 Merge branch '\''master'\'' into issue695 [ci skip]. commit b110ca1a6310c25d0cfb5766ffeb02c93e58eba7 Author: Alan Garny Date: Sat Jul 25 01:53:49 2015 +0200 Some minor cleaning up [ci skip]. commit 42e825894ae240399734691ed76245f9e5fdb97a Author: Alan Garny Date: Sat Jul 25 01:52:49 2015 +0200 Some work on adding a zlib plugin (#695) [ci skip]. commit bd68dee3e0e0de8d214549e479830e888ae120aa Author: Alan Garny Date: Sat Jul 25 01:35:01 2015 +0200 Some work on adding a zlib plugin (#695) [ci skip]. commit fe3e366800a65550e3a46fdeef857b02907c8de6 Author: Alan Garny Date: Fri Jul 24 19:42:12 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR (#690) [ci skip]. commit bfff490cf43c7bdb29c7ef1a9efc206fb352a85b Author: Alan Garny Date: Fri Jul 24 10:20:20 2015 +0200 Some minor cleaning up [ci skip]. NO_VIZ cannot be found anywhere in the libgit2 code, so it’s clearly not used! commit 8a0752de93fc89160953288f22d36c9282b1d4b1 Author: Alan Garny Date: Thu Jul 23 20:54:30 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. Make sure that we can build on Windows. There was a problem with some mathematical constants being redefined. It looks like it might be related to https://bugreports.qt.io/browse/QTBUG-45935. commit 68d415cd7987697d6eab6df00c4b5255a9d29e2a Author: Alan Garny Date: Thu Jul 23 18:27:25 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit 7ea95c39e95bb97e0217262bdc7899bbdc4cf8ba Merge: 1da754d64 c6cc4e4dd Author: Alan Garny Date: Thu Jul 23 18:01:16 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 30c19e339564ba50961ee26dbb1b5093c7d24d20 Author: Alan Garny Date: Thu Jul 23 17:56:52 2015 +0200 Merged from master. commit c6cc4e4ddffc6916d434d0ae0e134595ecc0d0ba Author: Alan Garny Date: Thu Jul 23 17:30:48 2015 +0200 Some minor cleaning up [ci skip]. commit 6e0774c1c34422922bb3aa6321e0315d17469831 Author: Alan Garny Date: Thu Jul 23 17:16:53 2015 +0200 SED-ML API plugin: added a test that actually creates a SED-ML document, model, etc. (closes #694). commit 8fa94703485d7ca1c6bd5b12e64f8da20000e54d Author: Alan Garny Date: Thu Jul 23 17:10:41 2015 +0200 SED-ML API plugin: now uses C++11 to build libSEDML (closes #692). commit 2aa36ba4d4692f631770f1cdb0c8463704ad4dfb Author: Alan Garny Date: Thu Jul 23 16:47:57 2015 +0200 SBML API plugin: added a test that actually creates an SBML document, model, etc. (closes #693). commit 1da754d64ccf1d7d52a0e9fc926e67a070400e35 Merge: 32388898c beb4b2a65 Author: Alan Garny Date: Thu Jul 23 16:13:38 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit beb4b2a65f060d6317fdc839430db2ab5c0d6f44 Author: Alan Garny Date: Thu Jul 23 16:05:01 2015 +0200 SBML API plugin: now use C++11 to build libSBML (closes #691). commit 87108558417cf57dfe2e270ac75f21b91df20e4e Author: Alan Garny Date: Thu Jul 23 14:29:18 2015 +0200 Some minor cleaning up [ci skip]. commit 32388898c9726d3a45f6522e29b67c1fa1e42855 Merge: 32c389ea7 acaa3f660 Author: Alan Garny Date: Thu Jul 23 13:56:27 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit acaa3f66072b4e2788c8109f1a69322e3a0c4ef9 Author: Alan Garny Date: Thu Jul 23 13:55:40 2015 +0200 Some work on getting our build system to work with Xcode once again. commit 32c389ea79a555bbbc3dfb66a1be9daa7d01c18e Merge: d3fcdf5dc 93c593990 Author: Alan Garny Date: Thu Jul 23 11:17:46 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 93c593990bf8019625c369069817261dfc0fa91d Author: Alan Garny Date: Thu Jul 23 10:46:14 2015 +0200 Some work on getting our build system to work with Xcode once again [ci skip]. commit 238405401e44b92005ea1d5002bf15ec35c3c967 Author: Alan Garny Date: Thu Jul 23 10:35:15 2015 +0200 Some work on getting our build system to work with Xcode once again [ci skip]. commit 1a817661330d8958a9c794d863c6120fd1f12734 Author: Alan Garny Date: Wed Jul 22 20:38:24 2015 +0200 Some minor cleaning up [ci skip]. commit 70fe54ff7cc89bc9d6cb2509e2c8c3c593651072 Author: Alan Garny Date: Wed Jul 22 20:13:10 2015 +0200 Some minor cleaning up [ci skip]. commit 578b80469618099310ecee25057e69edbaa1890e Author: Alan Garny Date: Wed Jul 22 19:00:19 2015 +0200 CMake: simplified things a bit since CMAKE_CFG_INTDIR is obsolete. commit 987c33cb3a49bf762060cd0b5df363e6ebe3f0a4 Author: Alan Garny Date: Wed Jul 22 18:59:38 2015 +0200 Travis CI: re-enable building and testing on Linux, and for both release and debug, now that we have got building and testing working again on OS X. commit d1cb6729e629a84b1f1c6ba3c6ad6b3b09432d6a Author: Alan Garny Date: Wed Jul 22 18:30:21 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit ea12899e267d9afd4fed2182377a8328fb3a04a4 Author: Alan Garny Date: Wed Jul 22 18:27:57 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 27d3a408547317bdcff15e271b64a051c025c57c Author: Alan Garny Date: Wed Jul 22 17:44:00 2015 +0200 Some minor cleaning up [ci skip]. commit 85abf61fe0e3853bbd56a528818aac347ad4f4f6 Author: Alan Garny Date: Wed Jul 22 17:39:54 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 6b45f552615a0561327d8a3467e0de0e08b0d651 Author: Alan Garny Date: Wed Jul 22 17:06:59 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 638ffa69964b8445ba3c0486b95b1f57d8229f97 Author: Alan Garny Date: Wed Jul 22 16:51:06 2015 +0200 Some minor cleaning up [ci skip]. commit eb5d98cbd7aa97000ba34bcc18f18dfc538d06b9 Author: Alan Garny Date: Wed Jul 22 16:15:35 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit b8d6895258cb6279878f700b9e4a32cebca9bbb3 Author: Alan Garny Date: Wed Jul 22 14:22:53 2015 +0200 Some minor cleaning up [ci skip]. commit 7eaf18942f12629dcde54c0f487dd00a3a3eb233 Author: Alan Garny Date: Wed Jul 22 13:24:02 2015 +0200 Travis CI: trying to understand why, on OS X, the tests fail and why there is a conflict between Qt frameworks. commit d96d906510728c7528a3d6714e85be971abed010 Author: Alan Garny Date: Wed Jul 22 11:36:19 2015 +0200 Travis CI: Qt 5.5 is now available on Homebrew so re-enabling tests on OS X. commit 42c29a33a69b7c9c454dc77754ecf585a137e41a Author: Alan Garny Date: Tue Jul 21 17:39:00 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit d3fcdf5dcefb05a23deb5ee7d6e594c9ab475e94 Merge: 6a6425efd 823cd9134 Author: Alan Garny Date: Tue Jul 21 17:32:33 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ed3bd82a09bbeb2663c48a939c527d6dda38f4ed Author: Alan Garny Date: Tue Jul 21 17:31:40 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML (#684) [ci skip]. commit e48d61fe6fa075a5c6ff89bcfaf89de6f47c2878 Author: Alan Garny Date: Tue Jul 21 16:15:55 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML (#684) [ci skip]. commit c0a1fcdedd1c5d9b187e051d78691685ee483206 Author: Alan Garny Date: Tue Jul 21 15:01:15 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML (#684) [ci skip]. commit 823cd913468501f4376f6ca5a6a742fa445e9976 Author: Alan Garny Date: Tue Jul 21 13:57:41 2015 +0200 Some minor cleaning up [ci skip]. commit 6a6425efd09406a0c802f37b0e78dccc35702f26 Merge: e7ecf9dde ec0831c59 Author: Alan Garny Date: Mon Jul 20 15:20:35 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ec0831c59a0f01dcdf4fa61c15aeed4263afba85 Merge: 0391037e5 d18db254c Author: Alan Garny Date: Mon Jul 20 15:19:01 2015 +0200 Merge pull request #689 from opencor/issue686 Added a SED-ML Support plugin (closes #686). commit d18db254cf5da61e68697013c053c33f813d91f6 Author: Alan Garny Date: Mon Jul 20 14:57:02 2015 +0200 Merge branch '\''master'\'' into issue686 commit 0391037e587d445a1c93771b2ba37bdf582ca457 Author: Alan Garny Date: Mon Jul 20 14:50:53 2015 +0200 KaTeX: upgraded to version 0.5.0 (closes #688). commit 64dc2c3e40cada934a1742d8d4f022569b2961eb Author: Alan Garny Date: Mon Jul 20 14:13:27 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit 8ba1769b02dde63c78022e862b7a603f635a7fd0 Author: Alan Garny Date: Mon Jul 20 11:36:52 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit b89457e320bb24ba8b6b2c727bd1d40d45fe589a Author: David Brooks Date: Sat Jul 18 14:54:10 2015 +1200 Tweak text. commit c6362acbf23b276088b80843b91f76e529091ef2 Author: David Brooks Date: Sat Jul 18 14:53:28 2015 +1200 Use `.bsml` as the extension of BioSignalML HDF5 files. commit 4da1a447b92645887e3301ca4e55b047fbc29e23 Author: David Brooks Date: Sat Jul 18 14:52:37 2015 +1200 Template for BioSignalML save dialog. commit b068229d69b9226ed7774fc8081fb8b1f259ff9c Author: Alan Garny Date: Fri Jul 17 17:53:56 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit a3316836e9b102ee28ade38e4c982a734bbf46c4 Author: Alan Garny Date: Fri Jul 17 16:42:33 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit 2ea7b8b922aa788ee2bd0e3c280980c6f22b8381 Author: Alan Garny Date: Fri Jul 17 16:34:05 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit 434859eaf3a2d400f9e8e77ec76e50cf1db046cb Merge: 01077c72e 9d4567f6c Author: Alan Garny Date: Fri Jul 17 16:20:09 2015 +0200 Merge branch '\''master'\'' into issue686 commit 9d4567f6cbc7e89aafbe63a16713cfd6e20ad03e Author: Alan Garny Date: Fri Jul 17 16:19:33 2015 +0200 Slight updates to our developer documentation following our simplified OS X build system [ci skip]. commit 59521dce65c6b42a1a5e49beaef92883ef95234b Author: Alan Garny Date: Fri Jul 17 16:13:04 2015 +0200 CMake: (greatly) simplified our OS X build system. This was made possible thanks to the way Qt and/or CMake now work. commit 01077c72e5090278f266caf6136a0d67d6331e9c Author: Alan Garny Date: Fri Jul 17 15:07:25 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit a5b272294853eec1dba10f1d7da24a688f415dc2 Merge: e84ee62b1 d829adf47 Author: Alan Garny Date: Fri Jul 17 14:24:18 2015 +0200 Merge branch '\''master'\'' into issue686 commit d829adf47fc3383026ff9f97337ddbfbfadd2f0b Author: Alan Garny Date: Fri Jul 17 14:23:59 2015 +0200 Some minor cleaning up [ci skip]. commit e84ee62b18bccf1d31f4c8903e86876a8eea4f11 Author: Alan Garny Date: Fri Jul 17 14:22:32 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit e37bfad61c5ed4d56ddeead2067c5aed3a2c94c8 Author: Alan Garny Date: Fri Jul 17 13:30:29 2015 +0200 PMR window: have the exposures and exposure files sorted alphabetically (closes #687). commit e2af017d17f3591ae7c8b0efe168b4d73e66adf7 Author: Alan Garny Date: Fri Jul 17 13:28:31 2015 +0200 PMR window: minor (invisible) improvement [ci skip]. commit f74ff5a3226ce29279bbe7910476b454a35895fd Author: Alan Garny Date: Fri Jul 17 13:27:42 2015 +0200 Some minor cleaning up [ci skip]. commit 8accef08c5cefa060cff8145cce238e6f62bd283 Merge: d3f9287db 6fbfb1a1f Author: David Brooks Date: Fri Jul 17 10:01:36 2015 +1200 Merge branch '\''master'\'' into libbsml commit 97cf2d511f7428347d13278860e893c450848c83 Author: Alan Garny Date: Thu Jul 16 20:16:51 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit 52a115e907a70587731ebfaa8c60e0ad26bbd762 Author: Alan Garny Date: Thu Jul 16 20:01:00 2015 +0200 Slight update to the developer documentation [ci skip]. commit 997ff7f2e3e327ac61799079abb73f08af15967a Author: Alan Garny Date: Thu Jul 16 19:54:31 2015 +0200 Some work on adding a SED-ML Support plugin (#686) [ci skip]. commit e7ecf9dde74bd4aa6daa0ad3627267c15753e568 Merge: c03b02693 7da9db2fd Author: Alan Garny Date: Thu Jul 16 19:38:29 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7da9db2fd258f78b9f2fc55277ba0518114ceea6 Author: Alan Garny Date: Thu Jul 16 19:34:33 2015 +0200 SED-ML API: manually fixed a problem with LIBSEDML_USE_CPP_NAMESPACE not having been defined when building libSEDML. commit 0cdc971e628681978cda1a90f714ea930b189b91 Author: Alan Garny Date: Thu Jul 16 18:15:31 2015 +0200 Some minor cleaning up [ci skip]. commit 56cd3bc79d6db6a4bc1b93cd35e6b9ab3487f233 Author: Alan Garny Date: Thu Jul 16 17:40:39 2015 +0200 Minor update to the developer documentation [ci skip]. commit 4d12c8b03fccbd63f061c044e7875f01035101b3 Author: Alan Garny Date: Thu Jul 16 17:35:32 2015 +0200 Minor update to the developer documentation [ci skip]. commit 3d08f0db3edc3274c09bf3075c37fb8c2b3d8bd5 Author: Alan Garny Date: Thu Jul 16 16:14:58 2015 +0200 Minor update to the developer documentation [ci skip]. commit d3f9287db05a06d257f60d2a1c4110d8182ef596 Merge: bc09cff44 453eb222a Author: David Brooks Date: Thu Jul 16 17:52:09 2015 +1200 Merge branch '\''master'\'' into libbsml commit 6fbfb1a1f4d1c5f65eb12f6625633c4747c4f75a Author: Alan Garny Date: Wed Jul 15 17:12:20 2015 +0200 Some minor updates to the user documentation [ci skip]. commit c03b026930f849fe29f5d05332b61db685b4b242 Merge: a5c597249 9014cc6a5 Author: Alan Garny Date: Wed Jul 15 15:50:43 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 9014cc6a5203fb97d275c69cfc51773bdbb4086a Author: Alan Garny Date: Wed Jul 15 15:47:46 2015 +0200 New snapshots. For some reasons, the previous snapshot wasn’t working on (Mac) OS X 10.7, 10.8 and 10.9. However, this had been tested through RealVNC, but I can’t see why it would make things break. Anyway, more on this at http://www.qtcentre.org/threads/63090-Qt-5-5-QwtPlotDirectPainter-Proble ms-on-(Mac)-OS-X. commit 453eb222a92e54b5156076d5e2b7e7c47b06fdad Author: Alan Garny Date: Tue Jul 14 19:44:32 2015 +0200 Slight update to the developer documentation [ci skip]. We were still referring to plugins/3rdparty rather than plugins/thirdParty. commit a5c597249d70fa1e2d6ce7bfca7d9a46638f08f8 Merge: c36b1c6fa 1938cf7ec Author: Alan Garny Date: Mon Jul 13 10:30:11 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 1938cf7ec8c1382c56161b7a2f472ebf08d1a196 Author: Alan Garny Date: Mon Jul 13 10:29:13 2015 +0200 New snapshots. commit c36b1c6fadccac41cee3e49a7da1d3f5cb2f35e4 Merge: 0596f6841 ab0788e20 Author: Alan Garny Date: Sun Jul 12 22:49:59 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ab0788e2072c0eca28023a9208ff5978b17be96b Author: Alan Garny Date: Sun Jul 12 22:48:05 2015 +0200 User documentation: updated the "What Is New?" section [ci skip]. commit e2728da1b3ec88fc5a36b548d9840b3cefb185ef Merge: 0264e6dd8 ca8f85aca Author: Alan Garny Date: Sun Jul 12 22:37:37 2015 +0200 Merge pull request #681 from opencor/issue14 Added support for SED-ML (closes #14). commit ca8f85aca7c1a0490b779bd9b456fa1853f22c5b Merge: 4990cf012 0264e6dd8 Author: Alan Garny Date: Sun Jul 12 22:14:05 2015 +0200 Merge branch '\''master'\'' into issue14 commit 0264e6dd84c0d3556377f8dac02f42a6fe747c12 Author: Alan Garny Date: Sun Jul 12 22:01:04 2015 +0200 Travis CI: show the outcome of the latest build/test from the master branch (as opposed to any branch). commit 4990cf01265a43bea4ab223f2e14c7ef2a709cd2 Author: Alan Garny Date: Sun Jul 12 21:56:17 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 4a969eb123d12cde773596679d09474643e6e751 Author: Alan Garny Date: Sun Jul 12 21:36:40 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 08edcff01c440f9a72a75e0bbba76f901990cb7c Author: Alan Garny Date: Sun Jul 12 21:06:12 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 74bbefa15b5269c53ca42a2ed1289bbd9c60d006 Author: Alan Garny Date: Sun Jul 12 21:03:41 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit f5962654a70b4a4b62a1474168a2066cbd0d6849 Merge: 3c3401354 a084f6a19 Author: Alan Garny Date: Sun Jul 12 14:27:09 2015 +0200 Merge branch '\''master'\'' into issue14 commit 3c34013549eca43173a238c92f749e8bb10ecccf Author: Alan Garny Date: Sun Jul 12 14:25:53 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit a084f6a198ea7b99ff19f016bba543d53a1cb092 Author: Alan Garny Date: Sun Jul 12 14:24:57 2015 +0200 CMake: only copy the Qt libraries and external libraries to build/bin (and not also to build) [ci skip]. commit d3ba4e9759634606aa71eca0cbe5b9ae9025c1bf Author: Alan Garny Date: Sun Jul 12 11:41:32 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 6d307fb7339e0ec5d008581897c11943c3710dda Author: Alan Garny Date: Sun Jul 12 11:27:26 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 9a34f5fb5f9f4327f36611e59621308fbda21b54 Merge: 2fa3d33ec 3abb775d1 Author: Alan Garny Date: Sat Jul 11 20:34:14 2015 +0200 Merge branch '\''master'\'' into issue14 commit 0596f6841461202a3682a9db55576e245fb9ce17 Merge: 8ecab3d49 3abb775d1 Author: Alan Garny Date: Sat Jul 11 20:32:20 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3abb775d137e37310fce7a8363f497234d55f651 Author: Alan Garny Date: Sat Jul 11 20:29:43 2015 +0200 Travis CI: we now build/test on Linux and build on OS X (still waiting for Homebrew to support Qt 5.5). commit 0136355ef247ee133c27faf7f232b8bbfcd790c7 Author: Alan Garny Date: Sat Jul 11 20:16:55 2015 +0200 Travis CI: this should pass now (still need to clean things up though). commit b2db5c53214c94f367e61ce6b66dcbef5c4fe169 Author: Alan Garny Date: Sat Jul 11 20:11:45 2015 +0200 Travis CI: passing TRAVIS_CI_BUILD=TRUE to CMake. commit b79104869f0963d2a671ec979990cbde3d475949 Author: Alan Garny Date: Sat Jul 11 20:06:40 2015 +0200 Travis CI: trying to understand what is going on with the Travis CI environment variables. Could it be that we cannot access them from within CMake?... commit 268faadeb6e42785b10d4859b17bac3ea206b4d2 Author: Alan Garny Date: Sat Jul 11 19:58:04 2015 +0200 Travis CI: finding out what values TRAVIS, CI and CONTINUOUS_INTEGRATION have (they are supposed to be equal to "true"; see http://docs.travis-ci.com/user/environment-variables/). commit e6646b69b95335d8d7b67de3921c0c2445e65bf3 Author: Alan Garny Date: Sat Jul 11 19:53:46 2015 +0200 Travis CI: use the system'\''s ICU files when building on Travis CI. commit e7a7e5fc568090c6b93d95a386b631a6659655a5 Author: Alan Garny Date: Sat Jul 11 19:00:50 2015 +0200 Travis CI: determine the name of the machine on which we are running. commit 3b65cef8e0baae13087501a13af9eb0e6a0cecb8 Author: Alan Garny Date: Sat Jul 11 17:10:25 2015 +0200 Travis CI: listing /usr/lib/libicu*. commit 84db6240b4dca33d20d2c21dc317ecfc055bf829 Author: Alan Garny Date: Sat Jul 11 15:58:00 2015 +0200 Travis CI: trying to determine on which version ucidata qt55multimedia depends. commit 2fa3d33ec7c49a744af946e76661959497df5b04 Author: Alan Garny Date: Sat Jul 11 15:44:24 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 1e4324e062ab33a5be2fb36481684f4e3ad949fa Author: Alan Garny Date: Sat Jul 11 15:36:51 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit db9fdfaef71eecfc8d7e1f45ac89d2996ab311db Merge: 9a9b17bc6 b77383cc8 Author: Alan Garny Date: Sat Jul 11 11:33:14 2015 +0200 Merge branch '\''master'\'' into issue14 commit b77383cc8cd1ed32485aaf263c7eed64574e7f5c Author: Alan Garny Date: Sat Jul 11 11:32:36 2015 +0200 OpenSSL: upgraded to version 1.0.2d (closes #678). commit 357d40d78c7e3a729404d85bb607c20dd2ee2ef0 Author: Alan Garny Date: Sat Jul 11 10:38:04 2015 +0200 Travis CI: still cannot determine in which package icudata, icui18n and icuuc are located, so disabling Linux once again and re-enaling OS X. commit e006334eb77d56c4b56aaa3696efb8c904e982c9 Author: Alan Garny Date: Sat Jul 11 10:35:19 2015 +0200 Travis CI: temporarily disable the deployment ICU files. commit 5db005535b7bdfab176a7aac437fb1968208a44c Author: Alan Garny Date: Sat Jul 11 10:14:23 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 582ed833314eac560509cb5faf1b54774de1ce91 Author: Alan Garny Date: Sat Jul 11 10:06:28 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit d6bec0a3765e810607382924735190dcf67525ed Author: Alan Garny Date: Sat Jul 11 03:31:14 2015 +0200 Travis CI: cannot determine in which package icudata, icui18n and icuuc are located, so disabling Linux once again and re-enaling OS X. commit 4404f973d36557bd5306dc1c86ecdfa008d3847a Author: Alan Garny Date: Sat Jul 11 03:22:14 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 667cae3e58e04b7353baaa5e133de3fc17393053 Author: Alan Garny Date: Sat Jul 11 03:21:31 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 6d83624864e3ad8e8322157023c4377b650b2588 Author: Alan Garny Date: Sat Jul 11 03:17:27 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit a75b9dbcd71ddcbd387b8d7c5554176f09475749 Author: Alan Garny Date: Sat Jul 11 03:15:05 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit bfce76fdec5c8820bbbbf9b2e10b6318eeebb28e Author: Alan Garny Date: Sat Jul 11 03:11:31 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit db9702b3dfb1ea8b5a71ed0d920c83fd28ace1ec Author: Alan Garny Date: Sat Jul 11 03:05:47 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit b2ecdd2502a3acd76f49fdfea1cee2df9901e17b Author: Alan Garny Date: Sat Jul 11 02:49:54 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 322b5ddf8f2770f04bcba6b0d1a2d665e8b78242 Author: Alan Garny Date: Sat Jul 11 02:44:21 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 9739f0a31581284e84ff2c4c4243f310fa888f7f Author: Alan Garny Date: Sat Jul 11 02:39:46 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit a9bdfb49a66ff416efd94fd4e97bdbc1da49c8fc Author: Alan Garny Date: Sat Jul 11 02:36:29 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 868d29a5a93868dccf1bd9061296b0c28d06fad6 Author: Alan Garny Date: Sat Jul 11 02:35:33 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 90c77312e966ddec6943fb9181409574e3e6558a Merge: 2d5d58304 29a0bc238 Author: Alan Garny Date: Sat Jul 11 02:28:10 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor Conflicts: .travis.yml commit 2d5d58304762ca7e51edc03c44c5bb1fac78097b Author: Alan Garny Date: Sat Jul 11 02:16:02 2015 +0200 Travis CI: we also need to install qt55location and qt55sensors (at least), not because we are using Qt 5.5, but because we now copy the various Qt libraries to our build/lib folder on Linux. commit 29a0bc238fe5d0c92cc5c319a21316afb82376b8 Author: Alan Garny Date: Sat Jul 11 02:16:02 2015 +0200 Travis CI: with Qt 5.5, we now need qt55multimedia. commit 390c0e03ca1029a37e1b1671452027b49e1c486f Author: Alan Garny Date: Sat Jul 11 02:09:43 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit e25956787da112970baf41ade30d7dfeff3f14c1 Author: Alan Garny Date: Sat Jul 11 02:06:07 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit ee381ac0269b28958e10bede0bc67f5d3dfcc8f8 Author: Alan Garny Date: Sat Jul 11 01:52:58 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit 365a74266fc0c73e27e9151f408fc04e4173557d Author: Alan Garny Date: Sat Jul 11 01:31:03 2015 +0200 Travis CI: re-enabling Linux building/testing now that Qt 5.5 seems to be available on Ubuntu 12.04 LTS via Stephan Binner'\''s PPA. commit 8bdcb1181dc1707852931f674cf6d122dfaea906 Author: Alan Garny Date: Sat Jul 11 01:21:11 2015 +0200 Travis CI: re-enabling Linux building/testing now that Qt 5.5 seems to be available on Ubuntu 12.04 LTS via Stephan Binner'\''s PPA. commit 9a9b17bc6bdfac2561ac74e85ad45a6ea955439e Author: Alan Garny Date: Fri Jul 10 20:01:37 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit f7b5b161c5b5a0dcffbef0830ec94919567adfcb Author: Alan Garny Date: Fri Jul 10 19:59:44 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 95cdc12c52fddb2dfeff37826e1d18d5074151ad Author: Alan Garny Date: Fri Jul 10 17:29:37 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 011bfee3c1e9a89bec66c2e32ebb437a1b64586a Author: Alan Garny Date: Fri Jul 10 17:01:17 2015 +0200 Some work on adding support for SED-ML (#14) [ci skip]. commit 8ecab3d491edd4d5d7388d9356c8db35dec17e8b Merge: 11dacd350 ce03987f1 Author: Alan Garny Date: Fri Jul 10 13:12:58 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ce03987f1efff81357a2b3e67a5985a5131ed2a4 Merge: 123f15fc7 6e4387311 Author: Alan Garny Date: Fri Jul 10 13:11:26 2015 +0200 Merge pull request #680 from opencor/issue671 Qt 5.5: Single Cell view: fixed some issues with a graph panel potentially becoming black on OS X and under certain conditions (closes #671). commit 6e43873114afb7a9f3c62b621f4028aefb8350b3 Author: Alan Garny Date: Fri Jul 10 11:45:06 2015 +0200 Qt 5.5: Single Cell view: prevent a graph panel from becoming black when running a simulation on OS X (#671) [ci skip]. commit 7f153822f6c0be6d4eaa1ab0b80455d0ab62b5bb Author: Alan Garny Date: Thu Jul 9 16:49:09 2015 +0200 Qt 5.5: Single Cell view: prevent a graph panel from becoming black when adding a graph to it on OS X (#671) [ci skip]. commit 123f15fc78671a042975f4e0dead30390fbb760d Author: Alan Garny Date: Thu Jul 9 14:28:00 2015 +0200 Some minor cleaning up [ci skip]. commit 11dacd350f35197f7819e3bb90aaf9c334c7e206 Merge: 05cef2033 5789e0848 Author: Alan Garny Date: Thu Jul 9 13:35:40 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 5789e08486037b2f0732c3623b304892bd768806 Author: Alan Garny Date: Thu Jul 9 13:12:44 2015 +0200 Qt 5.5: can once again '\''scroll'\'' the files, modes and views tabs on OS X (closes #672). commit c6514d3d190f10b05db87a4c40f38624b5cfa516 Author: Alan Garny Date: Thu Jul 9 10:37:44 2015 +0200 Oops, minor problem following some cleaning up (#677). commit 05cef20335b93dc260170fad3f633b46a9d678de Merge: a1752614d edf24b114 Author: Alan Garny Date: Thu Jul 9 10:33:08 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit edf24b114ca00aae07fe3c2010d04564d7d8cbd3 Merge: 2db2bb93d 98e239500 Author: Alan Garny Date: Thu Jul 9 10:29:41 2015 +0200 Merge pull request #679 from opencor/issue677 libgit2: upgraded to version 0.23 (closes #677). commit 98e2395007771efbed47c8fa2ec00ac56ee85c14 Author: Alan Garny Date: Thu Jul 9 10:16:39 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677). commit f2d75c52a19023ada0fe172c50753f9f13d9bc71 Author: Alan Garny Date: Thu Jul 9 09:58:36 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 8a4476051302636c21fe44e06b5d3833c1ba5120 Author: Alan Garny Date: Wed Jul 8 19:31:52 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 97b3781810c7e52daf87143998111a06e121513a Author: Alan Garny Date: Wed Jul 8 19:22:04 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 2a58f6ab13af8cd3ae75d61e6a01228dcef91149 Author: Alan Garny Date: Wed Jul 8 19:01:58 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit b21473e1f9350d1e5dd77e741f06fa7a6256fe11 Author: Alan Garny Date: Wed Jul 8 18:35:10 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit d55dfee0205458c3dbafc20066ec9a48b30760b2 Author: Alan Garny Date: Wed Jul 8 18:28:19 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 4d8ad23f32a4dd9ef966f2ac8db14ed5ff0b125e Author: Alan Garny Date: Wed Jul 8 17:02:56 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit bc95cab6fd44fc5751abbad59c3badd77b4b051d Author: Alan Garny Date: Wed Jul 8 15:00:55 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit a1c6bdea377caf8e871631b10d360d3c9879a128 Author: Alan Garny Date: Wed Jul 8 13:56:50 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 3b7d9b6e74c294e7c84b0b0900d1608c63a4401a Author: Alan Garny Date: Wed Jul 8 13:08:54 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit f5aad83a23051c3bef2cec3153f4e46ede6f6cdf Author: Alan Garny Date: Wed Jul 8 11:16:14 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 5c362506ad602f00cda83abffcfe23a7c2cc38a8 Author: Alan Garny Date: Wed Jul 8 11:14:27 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit 942f05747fc25e9b6f31a1aaf76500191a74a4f5 Author: Alan Garny Date: Wed Jul 8 11:08:26 2015 +0200 libgit2: some work on upgrading to version 0.23 (#677) [ci skip]. commit a1752614dd317bdb4df998a4a8bb95f1f3881244 Merge: fff0d0e25 2db2bb93d Author: Alan Garny Date: Wed Jul 8 10:49:34 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 2db2bb93d130c8e407713931f2c867c1ea278739 Author: Alan Garny Date: Wed Jul 8 09:44:48 2015 +0200 Some minor cleaning up [ci skip]. commit fff0d0e25709872b7ba3e0f04688d90d32ff63ce Merge: 4ebfbd020 7d4d2123e Author: Alan Garny Date: Wed Jul 8 09:14:27 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7d4d2123eecc721307c21f850498021a760e2c4f Author: Alan Garny Date: Wed Jul 8 09:13:13 2015 +0200 Single Cell view: fixed an error in the initial value of a '\''constant'\'' algebraic variable (closes #675). commit 4ebfbd020e854964bf59d26be6c8beaec5ecf6d9 Merge: 9f6e382f5 7b70feab0 Author: Alan Garny Date: Tue Jul 7 17:56:37 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7b70feab0dfadf941f0cf6d9587031e2c19d78c0 Author: Alan Garny Date: Tue Jul 7 17:35:53 2015 +0200 Single Cell view: fixed an error in the initial value of a '\''constant'\'' algebraic variable (closes #675). commit 54abccf31e039764313671a39cab64ab6f29d16d Author: Alan Garny Date: Tue Jul 7 17:17:17 2015 +0200 Some minor cleaning up [ci skip]. commit cf4fca70ce893542617389cd5fe829978b4e54a0 Author: Alan Garny Date: Tue Jul 7 14:50:06 2015 +0200 Some minor cleaning up [ci skip]. commit 2e3d9224ceedff4642852ff112e0ef8411aa0d2b Author: Alan Garny Date: Tue Jul 7 14:47:23 2015 +0200 Some minor cleaning up [ci skip]. commit 71ff9592125beead6aa17279448fcef228ee323e Author: Alan Garny Date: Tue Jul 7 14:33:14 2015 +0200 Single Cell view: made sure that the progress bar is properly reset when switching from one file to another (closes #676). commit 2b9acf142fdb88ea9b10698e42cf8d067cb67357 Author: Alan Garny Date: Mon Jul 6 20:26:55 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again (closes #674). commit b0ec72fcec1f27a8f042bfb55b9232832e3818bc Author: Alan Garny Date: Mon Jul 6 20:23:30 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again (closes #674). commit a8d95b5650570e6c20df173ad63ea55f3a88f04c Author: Alan Garny Date: Mon Jul 6 20:18:23 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again (closes #674). commit bb60417eb177c05c0a38a49f3768f86f3759a3a0 Author: Alan Garny Date: Mon Jul 6 20:04:22 2015 +0200 Some minor cleaning up [ci skip]. commit 04acd25ee44a1c2ff5476d4265135b8c8a09845c Author: Alan Garny Date: Mon Jul 6 19:46:50 2015 +0200 Some minor cleaning up [ci skip]. commit b1998d2e9127689488af48126f3348ddb41289a5 Author: Alan Garny Date: Mon Jul 6 19:27:34 2015 +0200 Some minor cleaning up [ci skip]. commit 9f6e382f5082fd2300e9bdf1a0e1a592004f152c Merge: 337e38bf1 4f6e262cf Author: Alan Garny Date: Mon Jul 6 15:47:53 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 4f6e262cfbef6893cbab2b188715f4121823e411 Author: Alan Garny Date: Mon Jul 6 15:42:27 2015 +0200 Some minor cleaning up [ci skip]. commit 4b96d47b809f8ab69ae948fc189fbdf512137d6b Author: Alan Garny Date: Mon Jul 6 15:32:21 2015 +0200 Command line: made it possible to reset OpenCOR (closes #673). commit 274f0c1a912f70ae28c7f690b084b9268114a940 Author: Alan Garny Date: Mon Jul 6 15:16:00 2015 +0200 Command line: some minor refactoring and improvement [ci skip]. commit 8d47146ca5d3b14134714d147635328393e6f9bf Author: Alan Garny Date: Sun Jul 5 12:28:05 2015 +0200 Qt 5.5: cleaned up some code and ended up deploying symbolic links, so make sure that we get the target file and rename it (as we used to do before…) [ci skip]. commit 40534a8c1ecaf63a76851a434b94e98ea854a608 Author: Alan Garny Date: Sun Jul 5 12:00:41 2015 +0200 Qt 5.5: had forgotten to deploy the libQt5Multimedia.so.5 file (on Linux) [ci skip]. commit c82420c2763705082d21d0be75c6a6ac453264f4 Author: Alan Garny Date: Sun Jul 5 11:24:19 2015 +0200 Travis CI: disable Linux altogether and only building on OS X. commit 710595e83caafd7907bad2f6c372d5c5415ed1c5 Author: Alan Garny Date: Sun Jul 5 11:05:22 2015 +0200 Travis CI: trying to use Qt 5.5 Beta on Ubuntu 12.04 LTS (even though it was built for Ubuntu 14.04 LTS). commit 337e38bf115039e5cb311ea88f2a6b823f6af71b Merge: ce017900b 9f9c48336 Author: Alan Garny Date: Sun Jul 5 10:16:40 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 9f9c483362b8ce03d2bbdb6274d761c8b39282f8 Author: Alan Garny Date: Sun Jul 5 10:15:54 2015 +0200 Qt 5.5: updated third-party binaries (closes #670). commit ce017900bdf028c3deb6feed7000cccfc908d057 Merge: ea01581af aee0a9ac4 Author: Alan Garny Date: Sun Jul 5 08:40:06 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit aee0a9ac4ebc0ef5a7f2b74e450a9c95657d631f Merge: c324030fc b726c851a Author: Alan Garny Date: Sun Jul 5 08:31:52 2015 +0200 Merge pull request #669 from opencor/issue667 Upgraded to Qt 5.5 (and Qt Creator 3.4.2) (closes #667). commit b726c851a0792bf25c585b42e134349671f8e3f9 Author: Alan Garny Date: Sun Jul 5 08:28:00 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit be23bb9682e2a710851b13edf541d95f24d2c972 Author: Alan Garny Date: Sat Jul 4 21:16:23 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 6fb6891c5f94420242c4e0136433aedd4bcd6990 Author: Alan Garny Date: Sat Jul 4 18:38:09 2015 +0200 Some minor cleaning up [ci skip]. commit 2849329bfa0e37551c328cafb97d82ac5190b53a Author: Alan Garny Date: Sat Jul 4 15:11:52 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 4c6a6bdb41b95c6c00ba73c7fc946af96850f738 Author: Alan Garny Date: Sat Jul 4 15:08:34 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 08906ef8418e96fc3a68663f1fbe02e95e786d5b Author: Alan Garny Date: Sat Jul 4 15:06:21 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 487e265c91c17e24cbf4279949159dedf3651efb Author: Alan Garny Date: Sat Jul 4 14:36:45 2015 +0200 Some minor cleaning up [ci skip]. commit 029310783dcaf0440e0bf2fc55ec640a89cf672d Author: Alan Garny Date: Sat Jul 4 10:45:08 2015 +0200 Some minor cleaning up [ci skip]. commit f02bb019dabddf558db6059c1a625cd2b5abe901 Author: Alan Garny Date: Sat Jul 4 09:22:35 2015 +0200 Some minor cleaning up [ci skip]. commit 61f3565ebc3a473a0c8a25a41a86958390490467 Author: Alan Garny Date: Sat Jul 4 08:28:52 2015 +0200 Some minor cleaning up [ci skip]. commit 621c08b78fc75210ac75aed8a465c537eec0c5f6 Author: Alan Garny Date: Fri Jul 3 20:32:49 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 1d3589470ffb1e69582f4999821b28b1da23a4dd Author: Alan Garny Date: Fri Jul 3 20:18:37 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 9c375ed567ddfb19ff72ffb7fb67ad510759d528 Author: Alan Garny Date: Fri Jul 3 18:08:16 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit c75123e9dcffcb8a3c4ca17a87ac3571034d6320 Author: Alan Garny Date: Fri Jul 3 17:53:45 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit c6ff2ff6d8406701b8694009d7cbe4030824ee59 Author: Alan Garny Date: Fri Jul 3 17:44:02 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 5f5eee0a65d7d3e1d7709b2af9999e7ab053694b Author: Alan Garny Date: Fri Jul 3 12:01:19 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 75bfbf6228b75d25a76f4e1d6bfd845b78f11a5a Author: Alan Garny Date: Fri Jul 3 11:07:01 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit b28308eaeffe3a65ba5878ae00e8cbaa7ae5f0f7 Author: Alan Garny Date: Fri Jul 3 10:54:44 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 1c8336df0486db7a3b48c74d646fa24486d66c66 Author: Alan Garny Date: Fri Jul 3 10:20:45 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 56f7dd24e0262ad5e046fc580b2c0ed40a388e50 Author: Alan Garny Date: Thu Jul 2 18:16:58 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit ba973c3ca63cea92e8e1a5de422175029680d735 Author: Alan Garny Date: Thu Jul 2 11:34:35 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 57fec01725ef9c9fdaf3485227fc61b0d9f19a27 Author: Alan Garny Date: Thu Jul 2 11:23:40 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 2c6c6b3b68e72fdb18c0ca61d37ca7221cdeac91 Author: Alan Garny Date: Thu Jul 2 11:09:40 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 876a99b71fddc8424107ee5e8c1e5ebea6d15058 Author: Alan Garny Date: Thu Jul 2 10:56:55 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit 231226405d67a17311761305cc8bc39cf13b41a0 Author: Alan Garny Date: Thu Jul 2 09:37:58 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit deb0308322dea833e53f00eea0bad72c3552d2dc Author: Alan Garny Date: Thu Jul 2 08:43:07 2015 +0200 Upgrade to Qt 5.5 (and Qt Creator 3.4.2) (#667) [ci skip]. commit ea01581afb711994ae2f84aa626826e0bd8cffa5 Merge: b1e6a2041 c324030fc Author: Alan Garny Date: Thu Jul 2 00:39:37 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit c324030fc125a5ba52ed13770b5aba576a5657ec Merge: 2ab1d9964 fd12a0282 Author: Alan Garny Date: Thu Jul 2 00:33:28 2015 +0200 Merge pull request #668 from opencor/issue664 Added support for SBML (closes #664). commit fd12a02825902ddc5a9273bb38a22104dc240629 Author: Alan Garny Date: Thu Jul 2 00:22:43 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 2bcd4309603812e38141d5695ea2c8cbda0155b9 Author: Alan Garny Date: Thu Jul 2 00:16:10 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit f2ad5f6b75e2bd4acb8a50bf82d115c31d9cb9f7 Merge: 095eb00e5 2ab1d9964 Author: Alan Garny Date: Thu Jul 2 00:14:15 2015 +0200 Merge branch '\''master'\'' into issue664 commit 2ab1d99647b02bbc3bc16d2f93a58344f63bad5f Author: Alan Garny Date: Thu Jul 2 00:13:58 2015 +0200 Some minor cleaning up [ci skip]. commit 979a80b623399ccb435011b49f94b956df0be67c Author: Alan Garny Date: Thu Jul 2 00:08:17 2015 +0200 Some minor cleaning up [ci skip]. commit 095eb00e55b20dd47b4061fdc92a27f6a5313a75 Author: Alan Garny Date: Thu Jul 2 00:04:10 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 59ad6eb39f068301591d2826a36e926810d4cea6 Author: Alan Garny Date: Wed Jul 1 23:57:42 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit e36a308586dd68adfe4aeacceaa71145ec58fdae Author: Alan Garny Date: Wed Jul 1 23:47:21 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 717b37b1ad3ea8a6cc9934168275e5827f665b50 Author: Alan Garny Date: Wed Jul 1 22:57:43 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 6d2e5654117b8c065cd75b9d12ff7be68e6235c1 Author: Alan Garny Date: Wed Jul 1 22:13:25 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 775cc378afbe1499e3a2d0281e1087450a63d9ef Author: Alan Garny Date: Wed Jul 1 22:12:07 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 4d29d96d3bf1d7ab715f366586f0678b6d38c613 Author: Alan Garny Date: Wed Jul 1 17:24:46 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit d4c2793f9f2c173a09878735ba77e6b3b8a190ae Author: Alan Garny Date: Wed Jul 1 16:58:56 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 49f8704b2220292e4ff95f6073fe7c447e642283 Author: Alan Garny Date: Wed Jul 1 16:00:09 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 8b3e187facba539b586ead55f9aaaf2bccc9a4ed Author: Alan Garny Date: Wed Jul 1 10:07:10 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 69275281e0f57750ba6e2ae98b53a7febbd7a3f8 Author: Alan Garny Date: Wed Jul 1 10:05:57 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 328a0c93ae3263f2c58bf8602f67efe724ca8877 Author: Alan Garny Date: Wed Jul 1 09:57:47 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 0f9cbbc46734136505b4154aee57df5a24126b20 Merge: f9fce33c6 2c188fdbf Author: Alan Garny Date: Wed Jul 1 09:16:38 2015 +0200 Merge branch '\''master'\'' into issue664 commit b1e6a2041f2e65dba9b56adc6c798ae55dc6e709 Merge: d113c6cc4 2c188fdbf Author: Alan Garny Date: Wed Jul 1 09:14:39 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 2c188fdbf18efecba3ca4d6bd2cbbe7df90c44d5 Author: Alan Garny Date: Wed Jul 1 09:14:12 2015 +0200 CellML API: added some basic tests to make sure that we have access to the CellML API (closes #666). commit d58152451e183e6f73764544f3d8816764bfb742 Author: Alan Garny Date: Wed Jul 1 09:13:38 2015 +0200 Some minor cleaning up [ci skip]. commit fe1c203b1533a91c90bbe359ed2653e1002a9480 Author: Alan Garny Date: Tue Jun 30 20:19:39 2015 +0200 Updated the developer documentation following the release of Xcode 6.4 [ci skip]. commit f9fce33c68a29469923c54ac8f7f7c5b2f2be34d Author: Alan Garny Date: Tue Jun 30 17:35:52 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 621d543c5a48e0578ce8abebe0c6ad679e1c29ae Author: Alan Garny Date: Mon Jun 29 16:51:56 2015 +0200 Some minor cleaning up [ci skip]. commit 8c98d976a71cec8c461eebcc7f552d1469f7171b Author: Alan Garny Date: Mon Jun 29 16:51:00 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit 791741fbb937053e4a6bfe5476c4d2aa7897db51 Author: Alan Garny Date: Mon Jun 29 16:32:12 2015 +0200 libSBML: some work towards supporting SBML (#664) [ci skip]. commit aa364f76dc00da372975cd905eaed61372878fbf Merge: 45ce7b9b6 b493bcfb4 Author: Alan Garny Date: Mon Jun 29 16:30:56 2015 +0200 Merge branch '\''master'\'' into issue664 commit d113c6cc4188d3cd66df7653db7e1e577a35c3b0 Merge: 979c2a23e b493bcfb4 Author: Alan Garny Date: Mon Jun 29 15:56:27 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit b493bcfb46f7273ebf92606487c4f13d8b58df2e Author: Alan Garny Date: Mon Jun 29 15:55:15 2015 +0200 New snapshots. commit f459be75fa5c37ffa41fb786f4009ed89dc20913 Author: Alan Garny Date: Mon Jun 29 15:12:51 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET (and not also CMAKE_OSX_SYSROOT) (closes #665). commit 45ce7b9b68bea2811c3310f1daf775476301c952 Merge: f568b672a c40a3b3f6 Author: Alan Garny Date: Mon Jun 29 14:51:58 2015 +0200 Merge branch '\''master'\'' into issue664 commit c40a3b3f65f8f51eee4c0ee3b7e10e5311641d7b Author: Alan Garny Date: Mon Jun 29 14:51:24 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET (and not also CMAKE_OSX_SYSROOT) (closes #665). commit 22409b23b6e0f5557b02c1848c375318cdf5c7f8 Author: Alan Garny Date: Mon Jun 29 13:58:24 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET (and not also CMAKE_OSX_SYSROOT) (#665) [ci skip]. commit f568b672a94baa0f42916c747b9dfb0f0aa44b59 Author: Alan Garny Date: Sun Jun 28 20:54:51 2015 +0200 libSBML: some work towards supporting SBML (#664). commit 1c903a9870450a1560b616048d3993b69ca94401 Author: Alan Garny Date: Sun Jun 28 20:22:48 2015 +0200 Some minor cleaning up [ci skip]. commit b63130a893bb5ec003b53488433388cd3bc2a475 Author: Alan Garny Date: Sun Jun 28 20:18:37 2015 +0200 Some minor cleaning up [ci skip]. commit 5a2e617764dc4df74886a046ea0a09d0c0cc5020 Author: Alan Garny Date: Sun Jun 28 20:04:36 2015 +0200 Some minor cleaning up [ci skip]. commit a76f65d2df456f25ce9d91004feff5cd297aacba Author: Alan Garny Date: Sun Jun 28 18:36:21 2015 +0200 Some minor cleaning up [ci skip]. commit 979c2a23e195b27a57298489c427a3c2ffee9d16 Merge: 9e5ea7ca4 463534cb0 Author: Alan Garny Date: Sun Jun 28 15:08:10 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 463534cb02706c99cb3cffa8108290d9ef69987c Author: Alan Garny Date: Sun Jun 28 15:06:20 2015 +0200 Single Cell view: make sure that simulations of models with loads of parameters finish smoothly (closes #656). commit 9e5ea7ca4b6c297a3f1280385b0d2b4c35c7d210 Merge: 0085f855d 5d2b424a0 Author: Alan Garny Date: Sun Jun 28 14:14:24 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 5d2b424a0b18fe61ef4159e9b3b44d273e2fb0c2 Author: Alan Garny Date: Sat Jun 27 17:27:21 2015 +0200 Some minor cleaning up [ci skip]. commit 5f7726fd1258c97bb8d65f82997d94f20c4f57c9 Author: Alan Garny Date: Sat Jun 27 10:29:55 2015 +0200 Some minor cleaning up [ci skip]. commit 0085f855dfb8908b4dd5a0e89e01b58648614057 Merge: fc677b129 d7a5cc52e Author: Alan Garny Date: Fri Jun 26 18:33:08 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit d7a5cc52ed715b4843d133156cff24a59b4db0bd Author: Alan Garny Date: Fri Jun 26 18:32:38 2015 +0200 Some minor cleaning up following issue #658. commit fc677b129896ab80a59db8e473b848d5fc4760dc Merge: 781d55b31 0e71db50e Author: Alan Garny Date: Fri Jun 26 11:50:30 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 0e71db50eb8fa836b3349501b614244a8174fb37 Author: Alan Garny Date: Fri Jun 26 11:47:26 2015 +0200 Slight update to the user documentation [ci skip]. commit d957e7ee32cc0fbd103be509e6ab9d5128c35e83 Author: Alan Garny Date: Fri Jun 26 11:41:12 2015 +0200 CellML Annotation view: added some tool tips to our web-based outputs (closes #663). commit 47563dcc06ad1398a2b6566d7bfcf7211fe4fee2 Author: Alan Garny Date: Fri Jun 26 11:00:16 2015 +0200 CellML Annotation view: slight improvement to the GUI on OS X [ci skip]. commit 781d55b31ae520f2253a706f7a3c3f22f2893712 Merge: 0782ec826 9de620be4 Author: Alan Garny Date: Fri Jun 26 10:41:39 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 9de620be4360dc4675a076003c71b932ed4297a6 Author: Alan Garny Date: Fri Jun 26 10:41:06 2015 +0200 Some minor cleaning up [ci skip]. commit 09635d5a10f8f97442a9632261513ad203cd18b9 Author: Alan Garny Date: Fri Jun 26 10:40:33 2015 +0200 Some minor cleaning up [ci skip]. commit 490f36f713d0b6dc733db28b9eae3521e179cda7 Author: Alan Garny Date: Fri Jun 26 10:29:24 2015 +0200 PMR window: added tool tips for buttons (closes #662) [ci skip]. Forgot to include the translations. commit 538ded2e5598e745fde1ad02942e5c8ff42fd022 Author: Alan Garny Date: Fri Jun 26 10:25:57 2015 +0200 PMR window: added tool tips for buttons (closes #662). commit 9aded2e8d6e2c582430eba2e39f2227b5b843879 Author: Alan Garny Date: Fri Jun 26 10:23:26 2015 +0200 Some minor cleaning up [ci skip]. commit 6c7023721bdfdd91feeed1b03a3c139221c0b5eb Author: Alan Garny Date: Fri Jun 26 09:50:39 2015 +0200 Some minor cleaning up [ci skip]. commit 88f1c844009d2a099f4369f3b6b3cca7a89ca2ce Author: Alan Garny Date: Fri Jun 26 09:45:59 2015 +0200 Some minor cleaning up [ci skip]. commit 7ecafc5849ef5f5ff70d8b6121ce88a6e4121e6b Author: Alan Garny Date: Thu Jun 25 23:32:39 2015 +0200 Travis CI: was using the wrong CMake download. commit 5774f8c864296a9ef55e45332d5a85280d56eeae Author: Alan Garny Date: Thu Jun 25 23:00:47 2015 +0200 Travis CI: Qt 5.4.2 is not available for Ubuntu 12.04 LTS, so reverting to Qt 5.4.1. commit 0782ec826683ee11fddd38d3ace44b2ee34384fd Merge: 62963acc5 de4925f6f Author: Alan Garny Date: Thu Jun 25 22:27:58 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit de4925f6ff42cbded6a348e38e25f8f76cbc4251 Author: Alan Garny Date: Thu Jun 25 22:19:08 2015 +0200 Travis CI: use updated versions of CMake and Qt on Linux. commit f2def693fa1fa4d56d16884bc74e9f90aafc967f Author: Alan Garny Date: Thu Jun 25 13:32:26 2015 +0200 PMR window: use help@physiomeproject.org as the contact email address (closes #661). commit 62963acc56ea7511e3f697444f5984f8f60eb75b Merge: de52fc958 8311264fd Author: Alan Garny Date: Thu Jun 25 13:21:21 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 8311264fd533b1d86ebf3361a84491826ff42f6c Author: Alan Garny Date: Thu Jun 25 10:10:46 2015 +0200 Some minor cleaning up [ci skip]. commit de52fc95863e35b6c993c06c990c73e781581b95 Merge: 290c044c6 54b29cac0 Author: Alan Garny Date: Thu Jun 25 09:45:15 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 54b29cac04dfb1e898827296748f7187ae96fd39 Author: Alan Garny Date: Thu Jun 25 09:06:28 2015 +0200 Some minor cleaning up [ci skip]. commit 9ccd1ab4c063d9034f667e067e319b852a9799e9 Author: Alan Garny Date: Wed Jun 24 21:27:50 2015 +0200 Some minor cleaning up [ci skip]. commit 9af2a5d2b2a2a0c591026e0018263d4dd58093d7 Author: Alan Garny Date: Wed Jun 24 18:06:11 2015 +0200 Property editor widget: update a tool tip only if required (when updating its name, unit or extra info). commit 659b6dad0ddbf0fe49e85f3fa729ce7b3c7fdf32 Author: Alan Garny Date: Wed Jun 24 18:03:25 2015 +0200 Property editor widget: update a tool tip only if required (when updating its name, unit or extra info). commit 290c044c6c9752c1619c4beb2313884b6c3f3cc6 Merge: 3444ff7e2 22754741a Author: Alan Garny Date: Wed Jun 24 17:13:30 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 22754741a51ff1e8f83bcfab451ab29d5e87dc65 Author: Alan Garny Date: Wed Jun 24 16:46:50 2015 +0200 CellML Text view: an id on a MathML element should be serialised using the MathML id attribute rather than cmeta:id (closes #658) [ci skip]. commit 90581e6ee238c999c09576c7debf3b9a956874c7 Author: Alan Garny Date: Wed Jun 24 16:08:01 2015 +0200 CellML Text view: an id on a MathML element should be serialised using the MathML id attribute rather than cmeta:id (closes #658). commit f360779db95c7b47c5ad466d2c7aa135ee5430a0 Author: Alan Garny Date: Wed Jun 24 16:03:40 2015 +0200 Reuse icons wherever possible [ci skip]. We really don’t want those static const QIcon statements outside a method anywhere otherwise… it may crash OpenCOR in some way or another (e.g. ./OpenCOR -c CellMLTools::help). commit 4755ad3ee483a9a025a0bb59c94582294497e643 Author: Alan Garny Date: Wed Jun 24 15:48:00 2015 +0200 Reuse icons wherever possible [ci skip]. To have those static const QIcon outside a method in the Core plugin means that we get various messages that read something like: You might be loading two sets of Qt binaries into the same process. Check that all plugins are compiled against the right Qt binaries. Export DYLD_PRINT_LIBRARIES=1 and check that only one set of binaries are being loaded. QObject::moveToThread: Current thread (0x7fa75bd2a230) is not the object'\''s thread (0x7fa75d8038e0). Cannot move to target thread (0x7fa75bd2a230) So, we are putting back those static const QIcon back into a method. commit 3444ff7e22c36bb196067f751c2b7e899066ae1f Merge: 741010daa e2cafec48 Author: Alan Garny Date: Wed Jun 24 15:33:38 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit e2cafec48511097ac3ddd8491812e5f0b80097e8 Author: Alan Garny Date: Wed Jun 24 14:07:59 2015 +0200 Single Cell view: cleaned up the parameter icons (closes #659). commit 156ebd6b4e5e2b79c864c886e3bec45a62af2ef2 Author: Alan Garny Date: Wed Jun 24 13:52:42 2015 +0200 Reuse icons wherever possible [ci skip]. commit ba3df49eaf62c43c5af4198f1db4b5b587b4e877 Author: Alan Garny Date: Wed Jun 24 11:42:31 2015 +0200 Property editor widget: update a tool tip only if required (when updating its name, unit or extra info) Note: this is particularly useful when initially populating a property editor widget, especially when you have loads of properties (e.g. a model that has loads of parameters, all of which we must list in the Single Cell view). commit ce8aa2bdef9130c1396aac29615afc8c7471ce20 Author: Alan Garny Date: Wed Jun 24 11:27:09 2015 +0200 Reuse icons wherever possible [ci skip]. Note that in the Single Cell view, this speeds things up a bit when you have loads of parameters. As a result, it helps with issue #656. commit 7753b5b0e8bcdf4e838dbd2466f1759ab28e9f17 Author: Alan Garny Date: Wed Jun 24 11:13:04 2015 +0200 Some minor cleaning up [ci skip]. commit 4ad6240cfa30300c1b56c881958fcb4940252c92 Author: Alan Garny Date: Tue Jun 23 19:58:09 2015 +0200 Some minor cleaning up [ci skip]. commit bbff6d7192de65453f298cbd3dd9e551db8d3063 Author: Alan Garny Date: Tue Jun 23 10:20:00 2015 +0200 KaTeX: upgraded to version 0.4.3 (closes #657). commit 2ca730a881ec467b4070f0a1603d39281298b132 Author: Alan Garny Date: Tue Jun 23 08:34:20 2015 +0200 Single Cell view: fixed an issue with the plotting of simulation data potentially being a bit messy during a simulation (closes #636). commit 741010daac69912c2e60d397c961912ac3f34cc8 Merge: 8ea6b02bb 0cb24d910 Author: Alan Garny Date: Mon Jun 22 16:31:20 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 0cb24d91063b88efe2ec6d36bc75295d4c96f4b5 Author: Alan Garny Date: Mon Jun 22 16:30:51 2015 +0200 Single Cell view: improved the accuracy of the progress bar (closes #655). commit 134769d0b268f2592452155790284250b622396a Author: Alan Garny Date: Mon Jun 22 16:29:08 2015 +0200 Some minor cleaning up [ci skip]. commit 13b8a7513efb9f767585db7333a757d8719a2ac6 Author: Alan Garny Date: Mon Jun 22 15:11:48 2015 +0200 Some minor cleaning up [ci skip]. commit 8ea6b02bb1d970ab6d29070ede39301f75f16b48 Merge: 51dfd9558 1d77f2b0e Author: Alan Garny Date: Mon Jun 22 11:55:29 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 1d77f2b0ef96a2ac571d8343b47ab3b9c0b86f80 Author: Alan Garny Date: Sun Jun 21 20:55:01 2015 +0200 Single Cell view: slight improvement to our working loop [ci skip]. commit af8a00f7b5d598049d5620c21b20e19dd062a809 Author: Alan Garny Date: Sat Jun 20 23:03:32 2015 +0200 Some minor cleaning up [ci skip]. commit 94cbceb3be4a1a1aa7da30f90fd4ca89e4834fe7 Author: Alan Garny Date: Sat Jun 20 11:59:55 2015 +0200 Some minor cleaning up [ci skip]. commit 90c429a46c076dfe7043bf1e79cb59f51abc6701 Author: Alan Garny Date: Fri Jun 19 14:03:28 2015 +0200 Some minor refactoring of plotting of graph segments and improvement of graph addition [ci skip]. commit c3dab4c7dcf18b8ee3e57d35ecd905bede0c498a Author: Alan Garny Date: Thu Jun 18 23:36:37 2015 +0200 CellML tools: let people know if a file cannot be physically exported (closes #653). commit 193ebced0a7fc146372460eb60328372dfbaad73 Author: Alan Garny Date: Thu Jun 18 23:30:42 2015 +0200 Some minor cleaning up [ci skip]. commit de43121315b6ec3f59f87f34e3130fa6091c3110 Author: Alan Garny Date: Thu Jun 18 21:56:04 2015 +0200 Some minor cleaning up [ci skip]. commit 859e0e42151b6fa67e28b6a6d885272a95a607ac Author: Alan Garny Date: Thu Jun 18 21:50:47 2015 +0200 Some minor cleaning up [ci skip]. commit 098e807dc3ae143f0f20fa6ec61c63f38d3c5d86 Author: Alan Garny Date: Thu Jun 18 21:11:43 2015 +0200 Some minor cleaning up [ci skip]. commit 51dfd9558b8cd440165a3787f680ba0c2054cd78 Merge: ba5cfe95e 4f5be752e Author: Alan Garny Date: Tue Jun 16 15:14:53 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 4f5be752e7d3b9892f610cd1e9372439cef94ecf Author: Alan Garny Date: Tue Jun 16 14:17:19 2015 +0200 User documentation: updated the CVODE and IDA documentation about disabling Interpolate solution for models with a stimulus protocol (closes #650). commit 3fc94a2dec38be2177c95d32b3b06bf57c73c617 Author: Alan Garny Date: Tue Jun 16 11:32:37 2015 +0200 Some minor cleaning up of the user documentation [ci skip]. commit ba5cfe95e3a2ad8731ef645e33f4c8f44b9703b2 Merge: 1ee332946 9d0d5b23e Author: Alan Garny Date: Tue Jun 16 11:18:36 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 9d0d5b23ea9060e6b052d6d2bced6c6caaf20c1a Author: Alan Garny Date: Tue Jun 16 11:17:17 2015 +0200 OpenSSL: upgraded to version 1.0.2c (closes #649). commit 8831030db18fd65883596168d7caf8cbd25ad652 Author: Alan Garny Date: Tue Jun 16 11:07:47 2015 +0200 Slight update tot he developer documentation [ci skip]. commit 1ee332946d02759bd379d4269f2ed984957fe405 Merge: 24e65e554 d7ee1ad53 Author: Alan Garny Date: Tue Jun 9 17:30:58 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit d7ee1ad53bc5473f1ea0107d7249de05f2c532b8 Author: Alan Garny Date: Tue Jun 9 17:30:26 2015 +0200 New snapshots. commit 24e65e5547f3a30b901f7996cc91bb827c97f023 Merge: a03afaf72 44ef83f58 Author: Alan Garny Date: Tue Jun 9 17:23:25 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 44ef83f588710ec629da23221d4d07eb716de686 Merge: f6306dcb0 2d2201fd7 Author: Alan Garny Date: Tue Jun 9 17:20:19 2015 +0200 Merge pull request #647 from opencor/issue643 Found a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (closes #643). commit 2d2201fd7a80df816ffe1bc30b7882047223018e Author: Alan Garny Date: Tue Jun 9 16:58:19 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 33ce75ee9b7dbf1836f739f46fcc043ea08bf607 Author: Alan Garny Date: Tue Jun 9 16:37:49 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit e6d977baa9d9714bf1d2c41e3772d3a9c446a962 Author: Alan Garny Date: Tue Jun 9 16:31:56 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 286cc39a083bfa2803c8608791bb2a922963040b Author: Alan Garny Date: Tue Jun 9 16:30:21 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit f457932ec6989ca8b7430801c9175196708492b7 Author: Alan Garny Date: Tue Jun 9 16:26:19 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 4deac05a560a7ba807927997e61732401e0c4b68 Author: Alan Garny Date: Tue Jun 9 16:17:25 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit a348c9deb60855ae08f1b012e9521a02eded8ddd Author: Alan Garny Date: Tue Jun 9 16:00:58 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Build libgit2 on Linux. commit 4ee5d1b8fd4e3b7f702ac746bdc10f00424861d0 Author: Alan Garny Date: Tue Jun 9 15:32:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Got confirmation that we got a null pluginInfo object on Travis CI on Ubuntu 12.04 LTS. Now, trying to find out exactly where. commit d2f44d2f87ddecab252a72e79f965a9d4c64cbbc Author: Alan Garny Date: Tue Jun 9 15:11:13 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit ce82532b1aa0a39866ea5099f977cbe5890d5864 Author: Alan Garny Date: Tue Jun 9 15:00:04 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit dcfb29d6f839b4c9a467698a5e3d2ae654dd3fdd Author: Alan Garny Date: Tue Jun 9 14:40:11 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit 6a1b1143be61047f662cf50ca598e99ef29f2f6f Author: Alan Garny Date: Tue Jun 9 14:34:39 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit 6ce529996f80e1f9daedaeab920ea8460d5c376f Author: Alan Garny Date: Tue Jun 9 13:26:34 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Oops, mistakenly dropped sortedFilenames… commit 53ce61d75cfcefd185b4e01f0c0b7b759a17ba1b Merge: 9625a6e14 f6306dcb0 Author: Alan Garny Date: Tue Jun 9 13:20:10 2015 +0200 Merge branch '\''master'\'' into issue643 commit f6306dcb04896f2d46927943d5c376aa44abcb8c Author: Alan Garny Date: Tue Jun 9 13:19:24 2015 +0200 Some minor cleaning up that gets us closer to issue643. commit 9625a6e14d82539824b1c6f38536406c454cc6ff Merge: 4ef738762 fd94a0742 Author: Alan Garny Date: Tue Jun 9 13:15:07 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. It would seem that the issue might have been related to our trying in PluginManager::PluginManager() to use a null pluginInfo object?… commit fd94a0742976fe251efcb07ec3a85726332d562c Author: Alan Garny Date: Tue Jun 9 13:07:44 2015 +0200 Some minor cleaning up that gets us closer to issue643. The idea is to try to minimise the difference between the master and issue643 branches, in an attempt to determine what makes the issue643 branch to fail its tests on Linux on Travis CI. commit 4ef738762deef64f4a4c7e7bd2ba2775098f40c8 Author: Alan Garny Date: Tue Jun 9 12:57:12 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit c4619a183dcb9e0b240ecfe37d9a84a322a3b57a Merge: 4ab45f8d2 52c302dd1 Author: Alan Garny Date: Tue Jun 9 12:36:55 2015 +0200 Merge branch '\''master'\'' into issue643 commit 52c302dd197b69cbbc12cd867e22082722e8667e Author: Alan Garny Date: Tue Jun 9 12:35:51 2015 +0200 Some minor cleaning up [ci skip]. commit 4ab45f8d2b0579ccd15fac49354b74c7b2612f53 Author: Alan Garny Date: Tue Jun 9 12:31:53 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit b706e56df732fe75384544c7bd58259841fc29f7 Merge: 46806fae4 059c16b04 Author: Alan Garny Date: Tue Jun 9 12:30:15 2015 +0200 Merge branch '\''master'\'' into issue643 commit 059c16b04251e268e7d3afa0e133d4859071ee7a Author: Alan Garny Date: Tue Jun 9 12:29:38 2015 +0200 Some minor cleaning up. commit 46806fae4e1c56a39176f5aaf3778eaa05d8aa21 Merge: ad2a1a7a9 bbc9d0fb9 Author: Alan Garny Date: Tue Jun 9 12:27:12 2015 +0200 Merge branch '\''master'\'' into issue643 commit ad2a1a7a92cd19c5e4bb22e1e6c90716fd25fb3b Author: Alan Garny Date: Tue Jun 9 11:53:27 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Ok, everything works fine using the master branch, so it’s not an issue with our prebuilt libgit2, but what could it be then since it’s working fine if we use a non-prebuilt libgit2? Trying to move the tracking of a plugin’s full dependencies further up. Could that somehow solve the problem? Also, FWIW, Travis CI runs on Ubuntu 12.04 LTS while we support 14.04 LTS and later. Still, as previously said, it all works fine with the master branch, so it shouldn’t matter as such. commit bbc9d0fb91111632ffc88a55c5a6ebea9023d366 Author: Alan Garny Date: Tue Jun 9 11:47:46 2015 +0200 Travis CI: just to check that everything builds fine on Linux (since it now fails on issue643). commit 9840fe26af02ba68753066b4988e0eea81e71dfb Author: Alan Garny Date: Tue Jun 9 11:37:02 2015 +0200 Travis CI: just to check that everything builds fine on Linux (since it now fails on issue643). commit 73cc7e5de60d5ab81176bf890d960eac640adbee Author: Alan Garny Date: Tue Jun 9 11:25:36 2015 +0200 Travis CI: just to check that everything builds fine on Linux (since it now fails on issue643). commit fb7f9129fd94e6311ac69db39ba3b24a75d62c8b Author: Alan Garny Date: Tue Jun 9 11:25:19 2015 +0200 Use our latest LLVM binaries [ci skip]. commit 013e87d0c8d83bffb295140fd0f92ca387e00ffa Author: Alan Garny Date: Tue Jun 9 11:17:59 2015 +0200 Travis CI: just to check that everything builds fine on Linux (since it now fails on issue643). commit d7a11f40f251ff4d3abf9e8ff9870b46016f9b05 Author: Alan Garny Date: Tue Jun 9 10:35:23 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 762a6a97a86df43587b4f1d91e91d538ea979bcb Author: Alan Garny Date: Tue Jun 9 10:11:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 2b9c7dfcbfe09443724db1b0705e3b08b66913a2 Author: Alan Garny Date: Tue Jun 9 09:22:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. It looks like it might be an issue libc not being found on Travis CI, so building libgit2 to find out what is needed by a built libgit2 compared with a prebuilt libgit2. commit 005d03fb1d1bdd2f44b2b08db79ba21fccb5d1d3 Author: Alan Garny Date: Tue Jun 9 01:16:20 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. still having problems with libgit2! commit e2493b137b569101bd64b0eb0f131143d7c14f16 Author: Alan Garny Date: Tue Jun 9 00:40:18 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Trying without ‘manually’ building libgit2… commit a55141df2862f3eaca0d6760996a47742659412f Author: Alan Garny Date: Tue Jun 9 00:25:49 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Actually, rebuilt our third-party libraries and reloaded them. Indeed, it would seem that what is failing our Travis CI build on Linux is libgit2?… commit ff1cf9463da4681027bf5286d5297f434d09a191 Author: Alan Garny Date: Mon Jun 8 20:36:43 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit e38ea3226d80cffadea91118d6b58702f8a6a73e Author: Alan Garny Date: Mon Jun 8 20:22:13 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit a350062951d82c843b159cfc6280dfa43d088676 Author: Alan Garny Date: Mon Jun 8 20:03:04 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit ebd51a515605b41acdc94462dd9efc212496ddb9 Author: Alan Garny Date: Mon Jun 8 19:35:01 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 8a2716311396515a16e2ed1dafd3fb82f1300d7a Author: Alan Garny Date: Mon Jun 8 19:10:54 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 1c8e722cfa9fbed541dbdff4473280c034d4c991 Author: Alan Garny Date: Mon Jun 8 18:53:30 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Argh, the problem wasn’t on OS X, but on Linux! commit 34ed4fbe039003d1fd15696f9e4219cce0d0b416 Author: Alan Garny Date: Mon Jun 8 18:50:54 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on OS X. commit 56ca6f842d65cd52c17df769b4fc3eb436844d71 Author: Alan Garny Date: Mon Jun 8 18:29:29 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on OS X. commit 6a4e3156c34bd99485df55c8a5c5fc64fd1d1cfb Author: Alan Garny Date: Mon Jun 8 18:21:36 2015 +0200 Slight update to the developer documentation [ci skip]. commit 7de61a02e77a7b24831741f5e89f804371da514e Author: Alan Garny Date: Mon Jun 8 15:59:10 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643). commit 0324e3ecde549d1c6f0e4e908b6dd38941482940 Merge: 05baf141f f3c605051 Author: Alan Garny Date: Mon Jun 8 14:54:12 2015 +0200 Merge pull request #646 from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) commit f3c60505168f2f6827d3429977386fad063bffbd Author: Alan Garny Date: Mon Jun 8 14:53:33 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) [ci skip]. commit 05baf141fd305197c99b41de942f24ae870d8ee2 Merge: 4a35cc999 61a77fc02 Author: Alan Garny Date: Mon Jun 8 14:38:11 2015 +0200 Merge pull request #645 from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) commit 61a77fc02f5b075184d5f554ef43a55916853048 Author: Alan Garny Date: Mon Jun 8 14:36:48 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) [ci skip]. commit 4a35cc99977216e59970185929835baf44b2bd06 Merge: 4aeda249f 40ccc7b42 Author: Alan Garny Date: Mon Jun 8 14:32:25 2015 +0200 Merge pull request #644 from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) commit 40ccc7b4210df239b71c840f0ac072f14133469b Author: Alan Garny Date: Mon Jun 8 14:30:48 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) [ci skip]. commit fc844eaa8699e348dee0e5b3da6a2fa44ed5bfc3 Author: Alan Garny Date: Sun Jun 7 11:37:54 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows (as used to be the case with the CellML Model Repository window) (#643) [ci skip]. commit a03afaf72bbbc531f0023b90eebff8ee584b6dc5 Merge: c640cf9af 4aeda249f Author: Alan Garny Date: Sun Jun 7 10:16:43 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 4aeda249f1456960930feb507d06d5e2da71560d Author: Alan Garny Date: Sat Jun 6 21:06:39 2015 +0200 Some minor refactoring following PR #625 [ci skip]. commit 18c0422f04c1cd14ff9e8bd387e3c755c6d5332d Merge: 0350b9dbc 03f07edd3 Author: Alan Garny Date: Sat Jun 6 20:39:29 2015 +0200 Merge pull request #642 from opencor/issue638 Renamed the "CellML Model Repository" window to "Physiome Model Repository" window (closes #638). commit 03f07edd371eb8b2592a811052f87cc055ab7b8e Author: Alan Garny Date: Sat Jun 6 20:20:34 2015 +0200 Some work on renaming the "CellML Model Repository" window to "Physiome Model Repository" window (#638). commit bc58b4534fec7f052c6daa4ad4d2a7389bb0c74c Author: Alan Garny Date: Sat Jun 6 20:13:47 2015 +0200 Some work on renaming the "CellML Model Repository" window to "Physiome Model Repository" window (#638) [ci skip]. commit 0cf20d4e8e85f2d4676c302ae42b2d060dbcf2a1 Author: Alan Garny Date: Sat Jun 6 16:51:48 2015 +0200 Some work on renaming the "CellML Model Repository" window to "Physiome Model Repository" window (#638) [ci skip]. commit f8df1d9ab0df31bba5b6b0d65f932452e9c05ead Author: Alan Garny Date: Sat Jun 6 16:22:21 2015 +0200 Some work on renaming the "CellML Model Repository" window to "Physiome Model Repository" window (#638) [ci skip]. commit 76fc8c1e16e9fb9ca3bf4e9dfd6dab4a228a64d0 Author: Alan Garny Date: Sat Jun 6 15:48:15 2015 +0200 Some work on renaming the "CellML Model Repository" window to "Physiome Model Repository" window (#638) [ci skip]. commit 0350b9dbcd9e837316425729b6a74f513b4e4d08 Author: Alan Garny Date: Sat Jun 6 15:28:05 2015 +0200 Some minor cleaning up [ci skip]. commit 1f75f72499cfb1007de255ec49326c23fa1dfcef Merge: 1e1b6c0e8 d8bf57329 Author: Alan Garny Date: Sat Jun 6 15:19:28 2015 +0200 Merge pull request #625 from dbrnz/datastoreid Save the model'\''s cmeta:id and base XML URI with a simulation result set. commit d8bf5732943c2e19a6f086db2b057552f71477b1 Merge: 724c4304f 1e1b6c0e8 Author: David Brooks Date: Sat Jun 6 11:18:27 2015 +0200 Merge branch '\''master'\'' into datastoreid commit 724c4304fab4743bf723881009bd6b7ceb5f16d3 Merge: dece761d5 44a700dd8 Author: David Brooks Date: Sat Jun 6 11:16:42 2015 +0200 Merge branch '\''master'\'' into datastoreid commit dece761d5921889b7b0d1e8d9b1d2f3b20ad93a3 Author: David Brooks Date: Thu Jun 4 15:25:20 2015 +0300 Use correct name for `cellmlFile()`. commit 1e1b6c0e862b3560387f2c45ef364be87ad780d5 Author: Alan Garny Date: Sat Jun 6 02:26:02 2015 +0200 PMR window: sped up both CellmlModelRepositoryWindowWidget::initialize() some more [ci skip]. commit 0537a5f8a9f09459078d348e1830228cf03b3fd8 Author: Alan Garny Date: Sat Jun 6 02:01:02 2015 +0200 Some minor cleaning up [ci skip]. commit a0e069218c40f6e8bc4d9bb2c848943b7aaae31c Author: Alan Garny Date: Sat Jun 6 01:57:10 2015 +0200 PMR window: sped up both CellmlModelRepositoryWindowWidget::filter() some more [ci skip]. commit c640cf9af6353ffbd5dd93a82259e535aa65c6a6 Merge: fdf6e3e45 f2d4b7651 Author: Alan Garny Date: Fri Jun 5 21:58:26 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit f2d4b76519bf98b25b02733b76fb2351c684710c Author: Alan Garny Date: Fri Jun 5 21:54:39 2015 +0200 PMR window: sped up both CellmlModelRepositoryWindowWidget::initialize() and CellmlModelRepositoryWindowWidget::filter() [ci skip]. commit fb7e5f30c244aaea414d32a1cab45b5a2b5ddcf3 Author: Alan Garny Date: Fri Jun 5 21:53:21 2015 +0200 Some minor cleaning up [ci skip]. commit 7a8ce1695fb19cb96c3f0d879fe4fd0653d73078 Author: Alan Garny Date: Fri Jun 5 21:29:16 2015 +0200 PMR window: oops, had forgotten to show/hide a particular tr element (#592) [ci skip]. commit fdf6e3e45cf9863bdca4dd1d19ef7349d8ea7ac6 Merge: 17bfdc073 a540c887b Author: Alan Garny Date: Fri Jun 5 21:05:42 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit a540c887ba0473283387100e009667f610602d0b Author: Alan Garny Date: Fri Jun 5 20:59:45 2015 +0200 Slight update to the user documentation [ci skip]. commit 01bb68d7671e59434023086738a5a4d98c960638 Merge: bef5b2466 5fb91bd83 Author: Alan Garny Date: Fri Jun 5 20:50:44 2015 +0200 Merge pull request #641 from opencor/issue592 PMR window: allow a CellML file to be opened directly (closes #592). commit 5fb91bd832d39bbfa5bf9e442655666ef0df52c6 Author: Alan Garny Date: Fri Jun 5 20:23:36 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592). commit f5477006fc70a9b1498cc51eaf5068d4818d482c Merge: 6e305408a bef5b2466 Author: Alan Garny Date: Fri Jun 5 20:13:29 2015 +0200 Merge branch '\''master'\'' into issue592 commit bef5b24669cc84afa825e6b78f5cfe3e0a46eed4 Author: Alan Garny Date: Fri Jun 5 20:13:17 2015 +0200 Have WebViewWidget::retrieveLinkInformation() return the corresponding QWebElement [ci skip]. commit 12e04fb41261a290e260194cdf150b0a0ea9be4c Author: Alan Garny Date: Fri Jun 5 20:07:50 2015 +0200 Some minor cleaning up [ci skip]. commit 6e305408aa8703ea89d3435b553fc90ca2c2a7b5 Author: Alan Garny Date: Fri Jun 5 20:05:39 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit 5b1908f517b12898121a8b0b0c663b3a5b897fa1 Author: Alan Garny Date: Fri Jun 5 19:54:54 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit ce6a633410dab9705a55a222834d717d2222acb0 Author: Alan Garny Date: Fri Jun 5 19:29:21 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit 60211417b4804faf1f7518ecb65d5550d7e8403d Author: Alan Garny Date: Fri Jun 5 19:19:15 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit a9bec0b8c2e66264a5d5fb11fd04ee0801cff180 Author: Alan Garny Date: Fri Jun 5 17:14:10 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit 8f6f87386541aa68b9905e6af30a39d97515cb7d Author: Alan Garny Date: Fri Jun 5 16:47:00 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit c9f2ca75b7c1061e4a4e45bbd3efdf5f32f93c97 Author: Alan Garny Date: Fri Jun 5 16:29:47 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit f52ad48c96ca5705e94055842529dac5a5a229d0 Author: Alan Garny Date: Fri Jun 5 16:27:39 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit 17bfdc073fe8e16b7275006a0693c803b6da8d62 Merge: f3245896c 38c4b4557 Author: Alan Garny Date: Fri Jun 5 16:03:27 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 38c4b45574129ee6885c6c797a3f88e4aa3793d4 Author: Alan Garny Date: Fri Jun 5 16:02:21 2015 +0200 CellML Annotation view: slight improvement to our buttons for adding/removing an ontological term [ci skip]. commit e791aa8391070d7d5a53699477f2532a430c979a Author: Alan Garny Date: Fri Jun 5 15:57:40 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit 3021bfac45c1474f4bb0f24921b3bade087df5f2 Author: Alan Garny Date: Fri Jun 5 14:41:54 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly (#592) [ci skip]. commit a457af67efdf0ef4b17ce30d9046d60032102415 Author: Alan Garny Date: Fri Jun 5 14:06:28 2015 +0200 Some minor updates to the user documentation [ci skip]. commit f3245896c5ec9f74544a462585c8f0b35e248cb8 Merge: 327280592 78448e6c9 Author: Alan Garny Date: Fri Jun 5 13:58:06 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 78448e6c9822b21d69661f8f5e68de8e14ef1cc3 Merge: 2f3dde514 14826663d Author: Alan Garny Date: Fri Jun 5 13:55:22 2015 +0200 Merge pull request #639 from opencor/issue593 PMR window: allow a workspace to be cloned (closes #593). commit 14826663d9ca7f2db9599aa70168ddbb8e173141 Author: Alan Garny Date: Fri Jun 5 13:52:00 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 5d4cb4de6f9bae4e20f0e0e70aeba18cb076e25f Author: Alan Garny Date: Fri Jun 5 13:45:33 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 32728059275ba89b7f61ba328653bbc1ddd7ede5 Author: Alan Garny Date: Fri Jun 5 09:55:03 2015 +0200 Some minor cleaning up [ci skip]. commit 1f913463d0f5243dbed1ea2c6de4adaee0619de7 Author: Alan Garny Date: Thu Jun 4 19:33:09 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 03ce3e04b15993fcc3516c01b9ebdb8ccada13bd Author: Alan Garny Date: Thu Jun 4 19:14:18 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit a9aa077bda70a741ec815b0b7a6bacc34260a9bf Merge: 9169710cd 2f3dde514 Author: Alan Garny Date: Thu Jun 4 17:23:03 2015 +0200 Merge branch '\''master'\'' into issue593 commit 2f3dde514e17c984acdbbbb55a9257a1b635c559 Author: Alan Garny Date: Thu Jun 4 17:22:38 2015 +0200 Some minor cleaning up [ci skip]. commit 9169710cd95ba1d5d3e4c55af4480f28624f7a6b Author: Alan Garny Date: Thu Jun 4 17:21:06 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 7bfd7f008492572c5445583fb9ce200b39c0b69b Author: Alan Garny Date: Thu Jun 4 16:25:35 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit e0d161a187a584bf2f5751010d9765de03d8cdfb Author: Alan Garny Date: Thu Jun 4 15:14:49 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 431577657c024451f7688d7df6af8bc81f0aea78 Author: Alan Garny Date: Thu Jun 4 14:51:26 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 4c2d169a4bc23943cc802f3844384072922d5c1b Author: Alan Garny Date: Thu Jun 4 13:21:51 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 8f71d74a89908664a77e118eaf1c42234884240d Merge: 2c66bc15a 527eb099b Author: Alan Garny Date: Thu Jun 4 11:37:01 2015 +0200 Merge branch '\''master'\'' into issue593 commit 527eb099b4fdecba538115852c564becffc5ee63 Author: Alan Garny Date: Thu Jun 4 11:36:48 2015 +0200 Some minor cleaning up [ci skip]. Refactored a struct into a class. commit 2c66bc15a79ab361a508ad0d0d58f4c982d29ce1 Author: Alan Garny Date: Thu Jun 4 10:38:08 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit ae223211ae058fd829030e8550f205b1c6e0be93 Author: Alan Garny Date: Wed Jun 3 19:03:05 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit e087b560fddc03f36146575ec39c3b133b704ec0 Author: Alan Garny Date: Wed Jun 3 19:01:55 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 1e1870a78e78c2ad5f0c96576055fce080d7e2f2 Author: Alan Garny Date: Wed Jun 3 18:24:56 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 7da8653caf3b6c423ab2b116b55e7722f4f77d14 Merge: cb9a03f95 28baa6bf1 Author: Alan Garny Date: Wed Jun 3 17:57:57 2015 +0200 Merge branch '\''master'\'' into issue593 commit 28baa6bf1bf17e5b92e4c4fd7d9c36d2d6bed000 Author: Alan Garny Date: Wed Jun 3 17:57:44 2015 +0200 Some minor cleaning up [ci skip]. commit cb9a03f9521a237140c13f18b4323703a3ca8822 Author: Alan Garny Date: Wed Jun 3 17:57:04 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 5d11e1143dbdcb26009424b8c8f322df24dfe8a2 Author: Alan Garny Date: Wed Jun 3 17:26:13 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit d659aa423c5347b9f39fd4460b13d02e41211d6a Merge: db628a80a 2d7e2037c Author: Alan Garny Date: Wed Jun 3 17:04:20 2015 +0200 Merge branch '\''master'\'' into issue593 commit 2d7e2037ce0834a6cf3be4512f465225eba3cc3a Author: Alan Garny Date: Wed Jun 3 16:56:54 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit f0ab8908d154f37a521aacfef56d19df917cd599 Author: Alan Garny Date: Wed Jun 3 16:47:49 2015 +0200 Some minor cleaning up [ci skip]. commit d5c0188bd1f20298e87e19b1775e21d282bf1128 Author: Alan Garny Date: Wed Jun 3 16:39:52 2015 +0200 Some minor cleaning up [ci skip]. commit 343bcd851f5c33e236785dce2d6c78df9cdc821a Author: Alan Garny Date: Wed Jun 3 16:39:36 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 8c0dfef40fe1131ba7dff53d3aa8ac8318ad79f2 Author: Alan Garny Date: Wed Jun 3 16:36:06 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit d7a3d358b82a0a63fe8b5d9e55499d5f83aad0ae Author: Alan Garny Date: Wed Jun 3 16:33:01 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit f5a5ef79e4917774b0960382388b8bce99d290bd Author: Alan Garny Date: Wed Jun 3 16:28:25 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit c99f084ace05a5758f51a194184a35b5c4a24067 Author: Alan Garny Date: Wed Jun 3 16:24:11 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 6872a02e445eadf0be5299143d4198e108d0e27b Author: Alan Garny Date: Wed Jun 3 16:22:59 2015 +0200 Some minor cleaning up [ci skip]. commit 25b8555e9c03eb6258f479cb33ce60595cda7270 Author: Alan Garny Date: Wed Jun 3 16:03:27 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 7a5095a46989a60fd4f98b3a6b189dd519198976 Author: Alan Garny Date: Wed Jun 3 15:39:02 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 7fd9659a0ea72c824f5b7dccd1959f161342bc7f Author: Alan Garny Date: Wed Jun 3 15:27:28 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 8ce4f6eb50a33eb20aae427e34d8d3d9b227b5b9 Author: Alan Garny Date: Wed Jun 3 15:14:57 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 7025921c2aa389866423185d3c85f90162e3b7bd Author: Alan Garny Date: Wed Jun 3 15:07:35 2015 +0200 Cleaned up our use of .UI files [ci skip]. commit 6b7f9801091fc9582246e5e3dff7a513d90b0848 Author: Alan Garny Date: Wed Jun 3 14:42:41 2015 +0200 Some minor cleaning up [ci skip]. commit db628a80abcb6d53bbcb295045e408b375d7830f Merge: 8cb669a9e 040df5cd5 Author: Alan Garny Date: Wed Jun 3 14:03:29 2015 +0200 Merge branch '\''master'\'' into issue593 commit 040df5cd5d8e20a3fdf268b690932833f2dd56fa Author: Alan Garny Date: Wed Jun 3 14:02:42 2015 +0200 Some minor cleaning up [ci skip]. commit 8cb669a9e981ed4d39d9b46e4c16b7e8c40c591e Author: Alan Garny Date: Wed Jun 3 14:02:14 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 4e0ed0f747d6d6570ec6dec445beba49d69ea563 Author: Alan Garny Date: Wed Jun 3 13:26:48 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 657e3546f3f3ea9df2af195e566d6459675c410d Author: Alan Garny Date: Wed Jun 3 11:33:30 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 5500ae2ad7aa7c3dfde86a0c36e599ce9875824f Author: Alan Garny Date: Wed Jun 3 10:31:32 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 44d2e624f1bc6725f40a2634421cccef5a3d319a Author: Alan Garny Date: Wed Jun 3 10:18:32 2015 +0200 Merge branch '\''master'\'' into issue593 commit ae3ab947da8cf5d48ddf1d3c1a90694426f614f8 Author: Alan Garny Date: Wed Jun 3 10:17:23 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 315a4407f90dac35571a8630885ad3df53552407 Author: Alan Garny Date: Wed Jun 3 10:11:07 2015 +0200 Renamed the CellMLAnnotationView::CellmlAnnotationViewMetadataWebViewWidget class to Core::WebViewWidget (closes #637). commit a018b679c545c6033bb5c1ec1f8d4e734e02ce22 Author: Alan Garny Date: Tue Jun 2 19:46:48 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit c3e62ac7255974b5073444fb648de9a1bf3e5824 Author: Alan Garny Date: Tue Jun 2 19:36:25 2015 +0200 Merge branch '\''master'\'' into issue593 commit b971e696435ed674204335a58f23c6e38b94264b Author: Alan Garny Date: Tue Jun 2 19:34:39 2015 +0200 Some minor cleaning up [ci skip]. commit 9f0a300bb68d8c1c0791d9423a53a1affa374c63 Merge: cddd3cb41 df743b226 Author: Alan Garny Date: Tue Jun 2 19:28:48 2015 +0200 Merge branch '\''master'\'' into issue593 commit df743b226975262335a5a3cffd016400f3a608b1 Author: Alan Garny Date: Tue Jun 2 19:28:12 2015 +0200 Renamed the CellMLAnnotationView::CellmlAnnotationViewMetadataWebViewWidget class to Core::WebViewWidget (closes #637). commit cddd3cb41ed83d87825270472339a066ca6424eb Author: Alan Garny Date: Tue Jun 2 18:32:03 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 2c02677bad6d2a544ff16890c7d311d43b1490cb Merge: 553fb5498 b5dcf49a9 Author: Alan Garny Date: Tue Jun 2 15:23:45 2015 +0200 Merge branch '\''master'\'' into issue593 commit b5dcf49a9df4a1474426ca262d98d8d911d65a86 Author: Alan Garny Date: Tue Jun 2 15:23:30 2015 +0200 Improved the GUI by adding an icon for opening remote files [ci skip]. commit 553fb54986b7c92997961d9e72b0f324d30dd56c Merge: ee9526b13 76d82bf2e Author: Alan Garny Date: Tue Jun 2 15:05:52 2015 +0200 Merge branch '\''master'\'' into issue593 commit 76d82bf2e447315a812a941a52615b4e01fbd139 Author: Alan Garny Date: Tue Jun 2 15:02:35 2015 +0200 Slight improvements to the rendering of windows borders on OS X [ci skip]. commit 3edb7436b2f288e370c2a622c5527047ffc7bbb6 Author: Alan Garny Date: Tue Jun 2 14:57:25 2015 +0200 Slight improvements to the rendering of windows borders on OS X [ci skip]. commit 83b91693b2995aad920cd9a1fa4a78b9095fed72 Author: Alan Garny Date: Tue Jun 2 14:56:52 2015 +0200 Some minor cleaning up [ci skip]. commit 45ce3d5d40cecf6339c7dc8302b248e593809978 Author: Alan Garny Date: Tue Jun 2 14:49:57 2015 +0200 Some minor cleaning up [ci skip]. commit d7a53b85e85e8d882beff7672d72fda8c6239b5d Author: Alan Garny Date: Tue Jun 2 14:30:20 2015 +0200 Some minor cleaning up [ci skip]. commit 1aee08e6ccd58968b730ecacb44c7988b11c2b2b Author: Alan Garny Date: Tue Jun 2 14:26:14 2015 +0200 Some minor cleaning up [ci skip]. commit 3fdf11f0c356a5e0890ac05c483a99329dbc63c9 Author: Alan Garny Date: Tue Jun 2 13:25:47 2015 +0200 Slight update to the developer documentation following the release of Qt 5.4.2 and Qt Creator 3.4.1 [ci skip]. commit ee9526b137bfe4350d33da137564b20a20e1e6ff Author: Alan Garny Date: Tue Jun 2 11:33:59 2015 +0200 Some minor cleaning up [ci skip]. commit 1697e2f2fe5aee0cf8dc8225f45b601520339f34 Author: Alan Garny Date: Tue Jun 2 11:00:05 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. The original idea was to use a QTreeView-based widget to list the published exposures, but this wouldn’t be ideal since we want to be able to have clickable links. This could be done, but more hassle than actually necessary. So, reverting to using a web-based approach. commit d868f74680c32a34ef8e2ebdf68ef8f77a4a275e Author: Alan Garny Date: Mon Jun 1 18:33:06 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit da6f775e5112bbd7f8843f51083d3ed26ba5df15 Author: Alan Garny Date: Mon Jun 1 17:56:13 2015 +0200 Some minor cleaning up [ci skip]. commit e60f174e591034f211941bb24a96f8e75437c9e4 Author: Alan Garny Date: Mon Jun 1 17:02:02 2015 +0200 Some minor cleaning up [ci skip]. commit 9ca5e668cb330487a29748643639565b4d43b7fe Author: Alan Garny Date: Mon Jun 1 16:52:06 2015 +0200 Some minor cleaning up [ci skip]. commit 6bd7b646d2c78375d8f329e9738942332ed3b295 Merge: 54d2aff09 f1b945cc6 Author: Alan Garny Date: Mon Jun 1 16:37:45 2015 +0200 Merge branch '\''master'\'' into issue593 commit f1b945cc6bd46e1c8ded0933c45ecbf57579edd5 Author: Alan Garny Date: Mon Jun 1 16:18:17 2015 +0200 Some minor cleaning up [ci skip]. commit 54d2aff094c4caa55c3e83244aaf74b5268e920a Author: Alan Garny Date: Mon Jun 1 15:57:46 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 4a50834dcb5ddb897856fb0676c251bdaf684460 Author: Alan Garny Date: Mon Jun 1 14:47:42 2015 +0200 Some minor cleaning up [ci skip]. commit 499a90a33d2be4c939e69d612b837f6438c1f607 Merge: e740811b3 44a700dd8 Author: Alan Garny Date: Mon Jun 1 10:41:17 2015 +0200 Merge branch '\''master'\'' into issue593 commit bc09cff44f8df23ee79c3f2ed510fb8fbfdea60a Merge: 1bc2a31db 44a700dd8 Author: David Brooks Date: Sun May 31 12:36:05 2015 +0300 Merge branch '\''master'\'' into libbsml commit 44a700dd81368031c72596b0a10ced1aadf5e449 Author: Alan Garny Date: Sat May 30 00:37:56 2015 +0200 Some minor cleaning up [ci skip]. commit 100611a2552aa97a23418488a4f8101d2dd15b36 Author: Alan Garny Date: Fri May 29 16:26:31 2015 +0200 Some minor cleaning up [ci skip]. commit 3de624d2498c801ed615e4f6039f9acc6bc93cb8 Author: Alan Garny Date: Fri May 29 16:25:18 2015 +0200 Some minor cleaning up [ci skip]. commit 768d4eeaa3b5cf57ff86386ffe390464ba1e4d19 Author: Alan Garny Date: Fri May 29 14:31:12 2015 +0200 Fixed an issue with the OpenCOR installation directory always being used when saving a new file (closes #631). commit 891acdf622883910a827be2b3923a3d58aded032 Author: Alan Garny Date: Fri May 29 14:15:09 2015 +0200 Some minor cleaning up [ci skip]. commit 6ef8d23c11399ed929efc9df62a47d7c513e3387 Author: Alan Garny Date: Fri May 29 13:43:39 2015 +0200 Some minor cleaning up [ci skip]. commit fc8e5619cadbbf08f52b70fd28f459444fe9cf5c Author: Alan Garny Date: Fri May 29 11:28:27 2015 +0200 Core plugin: allow for a selected filter to be provided in a call to getSaveFileName() and the like (closes #626). commit a63e72c043ba67c598ac63ae8fd9cd52047eae77 Author: Alan Garny Date: Fri May 29 11:24:45 2015 +0200 Some minor cleaning up [ci skip]. commit 9e847e30f49038a8bfd393c0ac2f02448ea32768 Author: Alan Garny Date: Fri May 29 11:16:54 2015 +0200 Updated the user documentation following issue #635 [ci skip]. commit fa303674e58e64fab523d11937911f2a3bcf589e Merge: e156d614f 42e7c9bef Author: Alan Garny Date: Fri May 29 11:10:44 2015 +0200 Merge pull request #635 from opencor/issue630 CellML Text view: allow comments before the definition of a model (closes #630). commit 42e7c9befb6efd42bd9b63de8693b8f581d6faa1 Author: Alan Garny Date: Fri May 29 11:08:57 2015 +0200 CellML Text view: done allowing comments before the definition of a model (#630) [ci skip]. commit dff91023f97fe0881f698cb803b0843028440f93 Author: Alan Garny Date: Fri May 29 11:03:36 2015 +0200 CellML Text view: some work on allowing comments before the definition of a model (#630) [ci skip]. commit e156d614fe747988e66b4e3d60ad8ed226a151ae Author: Alan Garny Date: Fri May 29 11:00:10 2015 +0200 Some minor cleaning up [ci skip]. commit 747db1ec72903ac13433c1f4b783a1d7c3d5be45 Author: Alan Garny Date: Fri May 29 10:14:27 2015 +0200 Some minor cleaning up [ci skip]. commit 3d72f26b585194ccb2eb46be33ab78f33f27b04c Author: Alan Garny Date: Fri May 29 09:44:58 2015 +0200 Travis CI: trying to avoid stalling builds (#627). To use ninja still resulted in a stalling build on Linux while it simply crashed g++ on OS X. So, now trying to make -j 3... commit 03bb99427b726568d407bdf3f44674911219057b Author: Alan Garny Date: Fri May 29 09:40:13 2015 +0200 Some minor cleaning up [ci skip]. commit b0f9f9a48822409467f9f3ff8c9eb29785df5fb5 Merge: ef1aba390 fa4e3c8da Author: Alan Garny Date: Fri May 29 09:34:19 2015 +0200 Merge pull request #624 from dbrnz/modelid Provide access to the CellML file object from its runtime and to the underlying model'\''s cmeta:id. Merging, although I am going to implement the above '\''corrections'\''. commit ef1aba390d80d0d19ad7dcb567d1b91a1f908555 Author: Alan Garny Date: Thu May 28 21:00:35 2015 +0200 Travis CI: trying to use ninja to build OpenCOR (#627). commit 1bc2a31db6fda3a954cc8183a8dd1d74cd620e6e Author: David Brooks Date: Thu May 28 17:54:15 2015 +0200 Use BioSignalML library to export a simulation as a HDF5 file. commit 5048f42bed1d8325b6419b2e3af06e584d554495 Author: David Brooks Date: Thu May 28 17:53:01 2015 +0200 Can we not manually provide a translation? commit 8f0a1b5cedc6925a6c8c50398ade813d7db90514 Merge: 8191a3d09 f47de7423 Author: David Brooks Date: Thu May 28 17:50:15 2015 +0200 Merge branch '\''datastoreid'\'' into libbsml commit 8191a3d09d03a5a7e6a840accddafc08d8cd96ff Merge: 715e1b7b5 fa4e3c8da Author: David Brooks Date: Thu May 28 17:50:02 2015 +0200 Merge branch '\''modelid'\'' into libbsml commit 715e1b7b5ae88195a957824f1008d86f93fa5289 Merge: 8f93dc21f e36e47d90 Author: David Brooks Date: Thu May 28 17:49:55 2015 +0200 Merge branch '\''filefilter'\'' into libbsml commit d050696d2a337eb68ee297d191b7508508638a78 Author: Alan Garny Date: Thu May 28 17:49:36 2015 +0200 Slight update to the user documentation [ci skip]. Following the closing of issue #621. commit f47de742316e3ecb2d095ce79596014b0db861fc Author: David Brooks Date: Thu May 28 17:49:09 2015 +0200 Save the model'\''s cmetaId and base XML URI with a simulation result set. commit fa4e3c8dac3da2b5f90f0d2fd9b2db7bb1ca69de Author: David Brooks Date: Thu May 28 17:47:17 2015 +0200 Provide access to the CellML file object from its runtime and to the underlying model'\''s cmetaId. commit e36e47d909b4e170aa94e48b5d93d919e7fc8e3f Author: David Brooks Date: Thu May 28 17:43:29 2015 +0200 "All Files" option should be last in list of file filters. commit 647660b131a63b6ffe6f92871ca7817a5e28c3e2 Author: Alan Garny Date: Thu May 28 17:36:27 2015 +0200 Single Cell view: fixed an issue with the Parameters pane looking blank at startup on OS X (closes #621). commit 8f93dc21f2fcb30f77c2f691f741969b708e5f38 Merge: b9372c080 c1a834dfa Author: David Brooks Date: Thu May 28 17:33:23 2015 +0200 Merge branch '\''master'\'' into libbsml commit c1a834dfa5421bd22f9e8ddeb9f0b80fdb887c7d Author: Alan Garny Date: Thu May 28 17:27:21 2015 +0200 Some minor cleaning up [ci skip]. commit 10d8e23c751aeabf2daf92885a070572483897c0 Author: Alan Garny Date: Thu May 28 15:23:23 2015 +0200 Some minor cleaning up [ci skip]. commit e35b22818655bc71d03847b20a521e652a2bf4ea Author: Alan Garny Date: Thu May 28 15:07:48 2015 +0200 Some minor cleaning up [ci skip]. For the CellML Annotation view, the cleaning up offers another solution to issue #405. commit 086c441a1a16c8c0ee7ee7306cd413cddd73bb5c Author: Alan Garny Date: Thu May 28 14:54:59 2015 +0200 Single Cell view: fixed an issue with switching to a different file for the first time temporarily showing all the properties of the CVODE solver (closes #619). commit cd9d3e28d3e22f79e53eab798a1a80f04956b0f3 Author: Alan Garny Date: Thu May 28 14:49:59 2015 +0200 Some minor cleaning up [ci skip]. commit 74609c560a828d75ddaa7e5200cb349cd9e6bb55 Author: Alan Garny Date: Wed May 27 21:44:51 2015 +0200 Slight update to the developer documentation [ci skip]. commit e740811b34f93b8151cafe248133f6a641e777b2 Merge: b6576bb2d 543305f36 Author: Alan Garny Date: Wed May 27 19:13:06 2015 +0200 Merge branch '\''master'\'' into issue593 commit 543305f362eced113e3b3ac9ef01e1b75e3e7a3f Merge: 8d6577117 e540214c0 Author: Alan Garny Date: Wed May 27 19:03:31 2015 +0200 Merge pull request #622 from opencor/issue620 LLVM: upgrade to version 3.6.1 (closes #620). commit e540214c0184cb9a9d16c4826f1ebcfee4ca08cb Author: Alan Garny Date: Wed May 27 18:59:50 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 (#620) [ci skip]. commit cab62321fc17a26df02a1f700d08978a2bfdd188 Author: Alan Garny Date: Wed May 27 17:30:15 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 (#620) [ci skip]. commit 563c301189cd0faa7a01afc0648c5b814b5b755e Author: Alan Garny Date: Wed May 27 16:43:58 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 (#620) [ci skip]. Not sure how those ones didn’t make it in the previous commit… commit 0380c23cfb7cdbad4c719855ae0b9938b464024c Author: Alan Garny Date: Wed May 27 14:58:07 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 (#620) [ci skip]. commit d3bfc7153570e3ef7317377069ffc1d2dbc094a1 Author: Alan Garny Date: Wed May 27 13:45:16 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 (#620) [ci skip]. commit 8d65771171e78586decfa8a77b1924d664dc58bd Author: Alan Garny Date: Wed May 27 10:53:21 2015 +0200 Some minor cleaning up [ci skip]. commit 0e0c20454b3a0ab21d5986f2dff12f7c2b4e9b57 Author: Alan Garny Date: Tue May 26 16:36:32 2015 +0200 Single Cell view: keep track of the position of the horizontal bar of the Parameters panel when switching file (closes #618). commit d7b82323aca59ac096a99ed146033191a6bc470f Author: Alan Garny Date: Tue May 26 16:35:29 2015 +0200 Single Cell view: keep track of the position of the horizontal bar of the Parameters panel when switching file (#618) [ci skip]. commit 2048d5b751092a640589d1118e074ab9773fb66e Author: Alan Garny Date: Tue May 26 16:32:02 2015 +0200 Some minor cleaning up [ci skip]. commit 497e1d3e9fa8afc9b1b799af53a835a7879210ee Author: Alan Garny Date: Tue May 26 16:12:24 2015 +0200 Some minor cleaning up [ci skip]. commit dbd23b4cfc6e6481758e65d1e09f4282b1f2166a Author: Alan Garny Date: Tue May 26 16:10:34 2015 +0200 Some minor cleaning up [ci skip]. commit 8045ef416d062491e00b5e3b4608e2006911486c Author: Alan Garny Date: Tue May 26 16:05:31 2015 +0200 Some minor cleaning up [ci skip]. commit ffad99f355eead2b11bbaec992f6580aabed00e7 Merge: b32d812c8 75d48ca3e Author: Alan Garny Date: Tue May 26 15:09:26 2015 +0200 Merge pull request #617 from opencor/issue616 Single cell view: fixed an issue with switching graph panels potentially shifting the contents of the Graphs panel (closes #616). commit 75d48ca3e0def9e2bbd7d734a353d25ca59e19b8 Author: Alan Garny Date: Tue May 26 15:06:30 2015 +0200 Single cell view: fixed an issue with switching graph panels potentially shifting the contents of the Graphs panel (#616) [ci skip]. commit b32d812c85059001856caacbb687e193cde22ad2 Author: Alan Garny Date: Tue May 26 14:58:54 2015 +0200 Some minor cleaning up [ci skip]. commit b6576bb2d5cbd9010b5ed2815307371ab4c97e46 Merge: b355e2ad5 19b0e3936 Author: Alan Garny Date: Fri May 22 19:10:33 2015 +0200 Merge branch '\''master'\'' into issue593 commit 19b0e3936e27f0a92493430b164a7893fdcb010d Author: Alan Garny Date: Fri May 22 19:08:46 2015 +0200 Travis CI: install CMake through on OS X. commit b355e2ad540003e5c36c9d9b5e00fbbdab62e7b1 Merge: 0271a41ca 257c554fb Author: Alan Garny Date: Fri May 22 19:05:56 2015 +0200 Merge branch '\''master'\'' into issue593 commit 257c554fbd405b09cf3d1978ae1884553f343315 Author: Alan Garny Date: Fri May 22 19:05:32 2015 +0200 Travis CI: install CMake through on OS X. Also some minor cleaning up. commit 0271a41ca82eb5c4deb8944ad40478918fa7ccaf Merge: 711755fbd 9e2e0f5ff Author: Alan Garny Date: Fri May 22 18:17:35 2015 +0200 Merge branch '\''master'\'' into issue593 commit 9e2e0f5ff4ad6e3c02bed29006e027b2b3df1831 Author: Alan Garny Date: Fri May 22 18:15:48 2015 +0200 Slight update to the developer documentation [ci skip]. commit 35acd8be0a6f8c3221ef9268e058b42ec75bd223 Author: Alan Garny Date: Fri May 22 18:13:05 2015 +0200 Some minor cleaning up [ci skip]. commit b7bdca3f9921f60ba4c8cbfa516726d4526dedb0 Author: Alan Garny Date: Fri May 22 18:12:30 2015 +0200 CMake: take advantage of the VERSION property in PROJECT() [ci skip]. commit 6cf924cf269c3a831b9c1fbcc04e19f4d079aead Author: Alan Garny Date: Fri May 22 17:44:12 2015 +0200 Increased the requirement for CMake from 3.0 to 3.1 [ci skip]. commit 1594b671c7fe9d28addd7e3318611c74dffaf177 Author: Alan Garny Date: Fri May 22 17:30:58 2015 +0200 Some minor cleaning up [ci skip]. commit 711755fbdfebeb9b57bdff52eac82e897ab01a18 Merge: 84df6147a 1cbceb47e Author: Alan Garny Date: Fri May 22 14:25:02 2015 +0200 Merge branch '\''master'\'' into issue593 commit 1cbceb47e82eaeeea0b065e13d5fc130643d6aa9 Author: Alan Garny Date: Fri May 22 14:23:28 2015 +0200 libgit2: updated our plugin binaries since we are now relying on OpenSSL on Linux and OS X [ci skip]. commit 84df6147ac47fc70e39ec7bfe49608e624d44e74 Author: Alan Garny Date: Fri May 22 14:21:12 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. Done generating libgit2 plugin binaries, so re-enabling the other plugins. commit e85c65855d7fc895e14349d243ed8c7f75ebe956 Author: Alan Garny Date: Fri May 22 14:02:37 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. Getting ready to rebuild our libgit2 plugin binaries since we are now relying on OpenSSL on Linux and OS X. commit 5af2f7b8011ce46c4213b89de5fca1e98ec6cd56 Author: Alan Garny Date: Fri May 22 13:58:28 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. Getting ready to rebuild our libgit2 plugin binaries since we are now relying on OpenSSL on Linux and OS X. commit 09db4559ae2ca0788ad132c738396c20d99276d0 Merge: d774c0aaf 45b58611b Author: Alan Garny Date: Fri May 22 13:54:01 2015 +0200 Merge branch '\''master'\'' into issue593 commit 45b58611b7c2f1c0c30ce964036165a5b52c564b Author: Alan Garny Date: Fri May 22 13:51:08 2015 +0200 Windows: provide some information about the executable (closes #614). commit 1282bdcd2d7a5c0614f63a3e9fbe56a29396553f Author: Alan Garny Date: Fri May 22 13:49:01 2015 +0200 Some minor cleaning up [ci skip]. commit d774c0aaffe49bd02130508f1f0b1de2c333fbee Merge: ab2908624 c58a82a60 Author: Alan Garny Date: Thu May 21 19:06:34 2015 +0200 Merge branch '\''master'\'' into issue593 commit ab290862423d8adecda5dcf17471d9b7b5ea6874 Merge: ca740747e 84f58e83c Author: Alan Garny Date: Thu May 21 19:04:54 2015 +0200 Merge branch '\''master'\'' into issue593 commit c58a82a60e08721b56969308244edac5eb1c68a3 Author: Alan Garny Date: Thu May 21 19:03:25 2015 +0200 libgit2: make sure that OpenSSL is included on Linux and OS X [ci skip]. commit 84f58e83ca6c213683f46cd8b05d530765b60fdb Author: Alan Garny Date: Thu May 21 19:01:28 2015 +0200 Some slight improvement to our CMake file [ci skip]. commit ca740747e0ebebc7de6dfbca415949dbce3e9eda Author: Alan Garny Date: Thu May 21 18:19:49 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit c34e2e1002466e1c3a9675f03d4b2cca6adbfb2a Merge: 8b6ad8fed 81cc30ae2 Author: Alan Garny Date: Thu May 21 18:11:12 2015 +0200 Merge branch '\''master'\'' into issue593 commit 8b6ad8fed13bcf2d70f8720c042fcef7ded184a8 Author: Alan Garny Date: Thu May 21 18:09:58 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 81cc30ae2e2905c741cc5bb5ea38a276b41c4274 Merge: ca200401e 17268b3ae Author: Alan Garny Date: Thu May 21 18:04:34 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ca200401e7f9504fab1bd9c366bfcfcaf60b7167 Author: Alan Garny Date: Thu May 21 18:04:03 2015 +0200 Some minor cleaning up [ci skip]. commit 26112d65152cd0f2b55789bd41917ff7e152ddd4 Author: Alan Garny Date: Thu May 21 15:58:52 2015 +0200 PMR window: some work on allowing a workspace to be cloned (#593) [ci skip]. commit 17268b3ae31442f5aa821f8c027e7b6627d08802 Author: Alan Garny Date: Thu May 21 15:06:27 2015 +0200 libgit2: some minor cleaning up [ci skip]. commit b0374cdae82070d5829f2bb447d21ce9c72f3ad6 Author: Alan Garny Date: Thu May 21 15:00:12 2015 +0200 Some minor cleaning up [ci skip]. commit ba49d45722d6c3c40692200eab6954e3be9e4985 Merge: 2e34fa2da 69d59920c Author: Alan Garny Date: Thu May 21 11:50:18 2015 +0200 Merge pull request #613 from opencor/issue608 Add support for Git (closes #608). commit 69d59920cb3c0faf57e37591cf8d95b04e8ebe99 Author: Alan Garny Date: Thu May 21 11:29:35 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. Re-enabled the other plugins. commit f4ca29bb5ef975f3492ca34bcf00559399e3d73d Author: Alan Garny Date: Thu May 21 11:25:06 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. Generated the binaries for the different platforms that we support. commit 2b5ec5d9e08da1b1188cf974776d77b60f5605d9 Author: Alan Garny Date: Thu May 21 11:24:06 2015 +0200 Some minor cleaning up [ci skip]. commit 4e00df69eaa3a269e3c811c579a13f5a5d158389 Merge: 0e645f58a 2e34fa2da Author: Alan Garny Date: Thu May 21 10:56:00 2015 +0200 Merge branch '\''master'\'' into issue608 commit 2e34fa2da107c5dc265ed80d53741fe7d5f63796 Author: Alan Garny Date: Thu May 21 10:48:28 2015 +0200 Slight updates to the user documentation [ci skip]. commit 333299e397986014df9dc5243304570b6eaf4549 Author: Alan Garny Date: Thu May 21 10:30:57 2015 +0200 Some minor cleaning up [ci skip]. commit 9d4e78eedf4667f66f2391ff6316ae25c7649777 Author: Alan Garny Date: Wed May 20 18:51:10 2015 +0200 Updated the user documentation and downloads section [ci skip]. commit 10ff4d512f18ebbae305760db7d1f62ad02a83b8 Author: Alan Garny Date: Wed May 20 18:43:28 2015 +0200 Slight update to the user documentation [ci skip]. commit b9372c080a0d187014e44cfcfa6a285bced0d95a Author: David Brooks Date: Wed May 20 17:43:27 2015 +0200 Add template code for BioSignalML data store interface. commit 0c023bb3e389429def124f8c7a87aea26de3c84e Author: Alan Garny Date: Wed May 20 00:55:11 2015 +0200 Keeping in sync with issue #611 [ci skip]. commit 84f36ec21649f0da84b45dc62d1ee39240086288 Author: Alan Garny Date: Tue May 19 19:29:54 2015 +0200 Keeping in sync with issue #611 [ci skip]. commit 34491f14c2f2df504293a24c5deb9c7d79d253d7 Author: Alan Garny Date: Tue May 19 19:16:30 2015 +0200 Keeping in sync with issue #611 [ci skip]. commit 5e30f218bb9a80bf8aaebbb1e72c1794b8e558a0 Author: Alan Garny Date: Tue May 19 14:23:14 2015 +0200 Slight update to the developer documentation following the release of Xcode 6.3.2 [ci skip]. commit 257109a6dad33954ec656aae4f63381268bc88c7 Author: Alan Garny Date: Mon May 18 19:38:08 2015 +0200 Slight update to the user documentation [ci skip]. commit 3faa7a518692931ac15d99acfb6fcaa8be166b4b Author: Alan Garny Date: Mon May 18 18:30:32 2015 +0200 Some minor cleaning up following issue #580 [ci skip]. commit e49a0c483079fd7443efa849202254551bd49d82 Author: Alan Garny Date: Mon May 18 17:39:00 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute 10^x (#611) [ci skip]. commit 32f098dae8cbcd468e535b42d517268201dc0361 Author: Alan Garny Date: Mon May 18 17:33:01 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute 10^x (#611) [ci skip]. commit e4e1cbc7a724c9df85bf63c1a597487116a3b8f0 Author: Alan Garny Date: Mon May 18 17:14:22 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute 10^x (#611) [ci skip]. commit 17331d79245293c103247ea41acd42142abc9f3f Author: Alan Garny Date: Mon May 18 14:28:38 2015 +0200 Some minor cleaning up [ci skip]. commit b9fb87af200ef1cd9937fffa963c46dd4d9691fb Author: Alan Garny Date: Mon May 18 13:14:25 2015 +0200 Slight improvement to our Qt message pattern [ci skip]. commit 0e645f58a06e3c19a0497fe272781912b0c84edd Merge: 7eff4f09f d2f8928cb Author: Alan Garny Date: Mon May 18 10:38:51 2015 +0200 Merge branch '\''master'\'' into issue608 commit d2f8928cb870bfea74b10dd192b374a43b63b19c Author: Alan Garny Date: Sat May 16 16:02:33 2015 +0200 Some minor cleaning up [ci skip]. commit 7c371e38a511f3f2aa2998309ed5141bb337b471 Author: Alan Garny Date: Sat May 16 14:34:44 2015 +0200 Single Cell view: very very tiny improvement to the accuracy of our timer [ci skip]. This is only relevant when we are running a simulation, pausing it and resuming it. Indeed, we used to restart the timer, but it'\''s the same as starting it, except that QElapsedTimer::restart() also returns the time elapsed since the previous start. We don'\''t need that information, so we might as well simply call QElapsedTimer::start()... commit 7eff4f09f011e56b748d0933bbd2b2d6b1d8a268 Merge: e472c4bf2 6ad8eef51 Author: Alan Garny Date: Fri May 15 01:54:05 2015 +0200 Merge branch '\''master'\'' into issue608 commit 6ad8eef5167175408e280a60f8f6fc7f499eb41e Author: Alan Garny Date: Fri May 15 01:47:42 2015 +0200 Compiler plugin: don’t rely on a temporary file anymore (closes #610). How that happened, I don’t know, but in commit c0d0beccb60c995128afae8acb4294ffb425f6c2, I effectively built the LLVM libraries without the import/export information for the MemoryBuffer class. This time, it should be fine. At least, there are now more symbols in the DLLs! commit e472c4bf2c952112ec5ad80d512219c1a9e28228 Author: Alan Garny Date: Thu May 14 20:36:10 2015 +0200 Merge branch '\''master'\'' into issue608 commit c0d0beccb60c995128afae8acb4294ffb425f6c2 Author: Alan Garny Date: Thu May 14 20:30:38 2015 +0200 Compiler plugin: don’t rely on a temporary file anymore (closes #610). commit bd88dd0345e92cc421078aca442f5cf29fd0d3d2 Author: Alan Garny Date: Thu May 14 18:51:25 2015 +0200 Compiler plugin: some work on not having to rely on a temporary file anymore (#610) [ci skip]. commit dabc9f2abee713d994a0923bd442a52ae68cb69b Author: Alan Garny Date: Thu May 14 18:20:52 2015 +0200 Compiler plugin: some work on not having to rely on a temporary file anymore (#610) [ci skip]. commit dcaac7a218a06ce2422cfa1835a723e6103240e1 Author: Alan Garny Date: Thu May 14 17:16:52 2015 +0200 Merge branch '\''master'\'' into issue608 commit a1b3323672f9ee3955c3c72991e1582eaa9ac522 Author: Alan Garny Date: Thu May 14 17:03:34 2015 +0200 Some minor cleaning up [ci skip]. commit 9ec57052d6331859d24810c4f226fc8659ac91c9 Author: Alan Garny Date: Thu May 14 16:50:35 2015 +0200 Windows: some minor cleaning up following commit 63e164c6424dc855a4e46b835a777f6f84c617dc [ci skip]. commit 635624261d79f1bf40ac6378c93da210ed40f120 Author: Alan Garny Date: Thu May 14 16:22:47 2015 +0200 Windows: some minor cleaning up [ci skip]. commit 77120ca870c33631c7efdb377c676e280ec1a6eb Author: Alan Garny Date: Thu May 14 09:07:24 2015 +0200 Windows: some minor cleaning up following commit 63e164c6424dc855a4e46b835a777f6f84c617dc [ci skip]. Note: we still need to do something similar about our use of the CellML API. commit 766c4774ec065e859fa77da1adb8da7804259296 Author: Alan Garny Date: Tue May 12 20:05:27 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. commit 105b84ff837645be6c4314da65952c9ca772cbad Author: Alan Garny Date: Tue May 12 19:56:55 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. commit 63e164c6424dc855a4e46b835a777f6f84c617dc Author: Alan Garny Date: Tue May 12 19:34:10 2015 +0200 Some minor cleaning up [ci skip]. commit fb637bafe5bd7566901b1e0e80d5670deed345e4 Author: Alan Garny Date: Tue May 12 16:36:55 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. commit caca6d613c00c646fb35fe3d3e75a8cf709aef72 Author: Alan Garny Date: Tue May 12 16:03:30 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. commit a6f8cbf1153d360df38292fec7d696048f011eae Author: Alan Garny Date: Tue May 12 10:06:35 2015 +0200 Some work towards adding support for Git (#608) [ci skip]. commit daaa76b7ae89400719501bd0784b696b5c602dbb Author: Alan Garny Date: Tue May 12 09:25:48 2015 +0200 jQuery: upgraded to version 2.1.4 (closes #609) [ci skip]. commit 79ad072b97d8bfe5d5890b5632ec79a89dd3c78b Author: Alan Garny Date: Mon May 11 16:37:23 2015 +0200 jQuery: upgraded to version 2.1.4 (closes #609). commit 74385418c70cb7e7df51c59a596d68ee30bc97c6 Author: Alan Garny Date: Mon May 11 16:29:42 2015 +0200 IDA solver: done with providing access to other IDA parameters (closes #605). commit 2e12aba0709e51102569a0e4655685c148264a29 Author: Alan Garny Date: Mon May 11 16:23:36 2015 +0200 IDA solver: some work on providing access to other IDA parameters (#605) [ci skip]. commit 8c26d467fef66aa9df4ec4ced0b2d975f625c15a Author: Alan Garny Date: Mon May 11 16:17:35 2015 +0200 Some minor cleaning up [ci skip]. commit ce2719c53ab8978f24b8afa9b9aa48313f3618df Author: Alan Garny Date: Mon May 11 16:06:08 2015 +0200 Some minor cleaning up [ci skip]. commit ec1a90ae0fadd69de36942f9f7359a1e5dc2f4f3 Author: Alan Garny Date: Mon May 11 15:25:21 2015 +0200 Some minor cleaning up [ci skip]. commit d61ec7082d1bf6c5bc80db252875b221825c6432 Author: Alan Garny Date: Mon May 11 14:59:36 2015 +0200 Some minor cleaning up [ci skip]. commit f72fea9156fa123591c58112e6ab4ce480d4fd7e Author: Alan Garny Date: Mon May 11 14:55:45 2015 +0200 Some minor cleaning up [ci skip]. commit 772366bcab75353f2eeb6e000187b0f726381d39 Author: Alan Garny Date: Mon May 11 10:24:32 2015 +0200 Some minor cleaning up [ci skip]. commit 1dbf94efc2452a77d8868c1976f443a5d21ffea6 Author: Alan Garny Date: Thu May 7 20:08:03 2015 +0200 Windows: updated our OpenSSL binaries [ci skip]. The newest binaries are from 20 March 2015 and for OpenSSL version 1.0.2a. commit e038bd108cad42943b2babfd2fb8afd57b96a287 Merge: a1c19f375 2c1aaf8a5 Author: Alan Garny Date: Thu May 7 19:31:17 2015 +0200 Merge pull request #607 from opencor/issue604 CVODE solver: provides access to other CVODE parameters (#604). commit 2c1aaf8a5f8eaf8527eed0f028e678de7ef443cf Author: Alan Garny Date: Thu May 7 18:34:47 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters (#604). commit 0eff8df162e91c0c20ce5fd3df2c20f27329a11a Author: Alan Garny Date: Thu May 7 18:12:48 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters (#604) [ci skip]. MSVC 2013 doesn’t support constexpr… commit 2dade127908fb89bde371ef29bf48a7424625c89 Author: Alan Garny Date: Thu May 7 18:02:55 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters (#604) [ci skip]. commit 10a1653a456b0d9294d375ef0aee6956156f39a4 Author: Alan Garny Date: Thu May 7 17:58:53 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters (#604) [ci skip]. commit fead0a3fc14205870487f95e2d66cbf36f2e2417 Author: Alan Garny Date: Thu May 7 17:28:56 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters (#604) [ci skip]. commit a1c19f37531d2c178263cc3f45b002cfbbb0f7d3 Author: Alan Garny Date: Thu May 7 17:06:46 2015 +0200 Travis CI: allow for all branches to trigger a Travis CI job [ci skip]. commit 14a137fa5bd33a1b25e0b856374675fde48b976d Author: Alan Garny Date: Thu May 7 16:50:37 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit e046e530d16396d03536de7e5c83942be98ab167 Author: Alan Garny Date: Thu May 7 14:58:48 2015 +0200 Some minor cleaning up. commit 679e9067b041c9898fcf4419b6d27c38ca2eb641 Author: Alan Garny Date: Thu May 7 14:57:09 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit af8fe911bdefc0235e4f58e0edfead771f8e3676 Author: Alan Garny Date: Thu May 7 14:37:31 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 5613d1872f2263a4e18a1f81cd11de27294a9ac8 Author: Alan Garny Date: Thu May 7 14:22:05 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 9fdae7c6135458f5235681cd3054bd862306c2fb Author: Alan Garny Date: Thu May 7 13:25:14 2015 +0200 Some minor cleaning up. commit 0a7848afebb0b3f2067dc5ef3dc1e76d25ea20ce Author: Alan Garny Date: Thu May 7 11:41:12 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit de906df17f43414e4b184fa1f3eb1fddce19b689 Author: Alan Garny Date: Wed May 6 20:10:56 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 2aa5cc371db77e7251f044fdfcca13c59db88f97 Author: Alan Garny Date: Wed May 6 19:59:37 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit 38d007591e65d5a38a4c76f5fa1fffc69c8bd3be Author: Alan Garny Date: Wed May 6 19:25:03 2015 +0200 Some minor cleaning up. commit b0f68a9cf77ebcccf1c95c25f764896760c637fd Author: Alan Garny Date: Wed May 6 19:05:53 2015 +0200 Some minor cleaning up. commit eda340372fdbda16a11b106e8ea1bddf6f606039 Author: Alan Garny Date: Wed May 6 18:14:09 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit 828a29f8c76d67928d60322fabc5db431ea7ffde Author: Alan Garny Date: Wed May 6 17:14:04 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit e1bfd9fa4d2351bb9b1b4d2b72d41ce66851c295 Author: Alan Garny Date: Wed May 6 16:50:55 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit a0e76c05fd252f9ff69c17dd34e886036cbdaf69 Author: Alan Garny Date: Wed May 6 15:42:38 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit 53388ddc4af282a8c79398cca87a5e553b59edfb Author: Alan Garny Date: Wed May 6 15:32:42 2015 +0200 Some minor cleaning up [ci skip]. commit d7ad90dcdd475af619ceca81edfdc8ce5c54a3db Author: Alan Garny Date: Wed May 6 15:07:22 2015 +0200 Slight improvements to our property editor widget. Had forgotten to propagate the booleanPropertyChanged() signal. commit bd9e7d1196ad55ecff13a44dc5d119a4b0e179b7 Author: Alan Garny Date: Wed May 6 14:36:48 2015 +0200 Some minor cleaning up [ci skip]. commit b88884f9130333d074e8e80662e7bda8591dcc60 Author: Alan Garny Date: Wed May 6 14:33:08 2015 +0200 Some minor cleaning up [ci skip]. commit 49b18ed6272e2d09d00e61179734a6fe518ef6f5 Author: Alan Garny Date: Wed May 6 14:00:03 2015 +0200 Some minor cleaning up [ci skip]. commit 9ab7462b65e144a79b2f207c4f2bd282d32f481f Merge: 9f2e70cd8 df70efa0f Author: Alan Garny Date: Wed May 6 13:12:36 2015 +0200 Merge branch '\''master'\'' into issue604 commit df70efa0f2b0e8592b69a3170038521dee15cd3d Author: Alan Garny Date: Wed May 6 12:57:51 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606) [ci skip]. commit e1e2f806ea4ec9eca461c4ae150afbb735f4cd2b Author: Alan Garny Date: Wed May 6 11:39:32 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation (closes #606). commit c0bf59f144a688e76bdab8ca7ff924e4541e7bfa Author: Alan Garny Date: Tue May 5 23:38:27 2015 +0200 Documentation: slight update to the developer documentation following the release of the unified installer [ci skip]. commit 9f2e70cd80f2e7aa7de24c90634f3ed4ed967d84 Author: Alan Garny Date: Tue May 5 19:00:27 2015 +0200 Some minor cleaning up. commit 2cc8ce51079c71f8845f6efab670b9c25f5efb3a Author: Alan Garny Date: Tue May 5 18:57:22 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit f5178f4a95cadb30e3643bb3f0ba6349769d61fb Author: Alan Garny Date: Tue May 5 15:49:39 2015 +0200 Some minor cleaning up. commit f8e74964f07787e1969c19ca3221e4afb86c477b Author: Alan Garny Date: Tue May 5 11:06:50 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 6bfe53e4f989ed99d542dee2636e9f0a4669c4c1 Author: Alan Garny Date: Tue May 5 10:46:32 2015 +0200 Some minor cleaning up. commit 512ab8936aec2c174a8561cd9b610d5aadbb6b06 Author: Alan Garny Date: Tue May 5 10:16:33 2015 +0200 Documentation: slight update to the CellML Text view documentation [ci skip]. commit 8b6a9c357318b98790fb4decf230c55398ecd3e5 Author: Alan Garny Date: Tue May 5 09:48:28 2015 +0200 Some minor cleaning up. commit b566918e1a4d5cab0f459aeb33bb6b7881fade9f Author: Alan Garny Date: Mon May 4 18:13:00 2015 +0200 Some minor cleaning up. commit febf3801a79ef0da86cd310dfe533e7f1e814f13 Author: Alan Garny Date: Mon May 4 18:07:56 2015 +0200 Some minor cleaning up. commit 31f060bc54ffff1efb89e84074cf90688c91a594 Author: Alan Garny Date: Mon May 4 18:04:27 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 4acde8fbe057e4f65cae909a28a439f4f6f936a0 Author: Alan Garny Date: Mon May 4 17:49:10 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit bcf5a3fd02a7a35bbfd73d3f48084a9b1e87bbd9 Author: Alan Garny Date: Mon May 4 17:28:54 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 2f8497e5b5af6fca60b91885ea360f73144d8f42 Author: Alan Garny Date: Mon May 4 16:45:32 2015 +0200 Some minor cleaning up. commit 853a51e737d96f3baaf8959d7030d28a0ba8fe4a Author: Alan Garny Date: Mon May 4 16:40:45 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit 033b2493751002fabe822cda43a6ba1543e2b6cf Author: Alan Garny Date: Mon May 4 15:06:03 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit f3664ee3143ca7f483c202484a9e28e8373af037 Author: Alan Garny Date: Mon May 4 14:35:50 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters (#604). commit d6cddd415459b43bb15fdf422fbda812cb64b9de Author: Alan Garny Date: Mon May 4 11:25:47 2015 +0200 Documentation: slight update to the CellML Text view documentation [ci skip]. commit 3ff61fa192171941aa99d864f9a4b7c32263c4c8 Author: Alan Garny Date: Thu Apr 30 13:13:09 2015 +0200 CellML Tools plugin: moved it from the Miscellaneous section to a new Tool section (closes #596). commit 8c87d80bce189e05325e25e0221959891bd9669d Author: Alan Garny Date: Thu Apr 30 13:09:24 2015 +0200 Some minor cleaning up [ci skip]. commit 2eb9ad9a19be03a1265d95533ec0c278c353645e Author: Alan Garny Date: Thu Apr 30 13:07:53 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section (#596) [ci skip]. commit 7cdac26a43939a76d7eeb933bff6d64d21000224 Author: Alan Garny Date: Thu Apr 30 13:04:58 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section (#596) [ci skip]. commit e995aca51330fcfdb061151650af08f6ad6b4e44 Author: Alan Garny Date: Thu Apr 30 12:51:14 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section (#596) [ci skip]. commit cf252d9ee3a268dd6abcad5b2b6111e1074f5a08 Author: Alan Garny Date: Thu Apr 30 12:40:53 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section (#596) [ci skip]. commit 46eee11b4be5f3575315f00c4a0dcac5b2384f8c Author: Alan Garny Date: Thu Apr 30 12:30:26 2015 +0200 Some minor cleaning up [ci skip]. commit 1e3917b050e9e28caaaeff94dcaccf89a45eff5a Author: Alan Garny Date: Wed Apr 29 18:51:40 2015 +0200 SUNDIALS library: upgraded to version 2.6.1 (closes #580). commit 51af534c1f09221ed2abc2d51a4e74202352d53d Author: Alan Garny Date: Wed Apr 29 18:41:53 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 (#580) [ci skip]. commit 4748fddb6f1288d3a916a271bf61bed58cdbc455 Author: Alan Garny Date: Wed Apr 29 18:14:28 2015 +0200 SUNDIALS library: upgraded to version 2.6.1 (closes #580). commit 513d24df478aceda22cc473c6f02d21ddf6800fc Author: Alan Garny Date: Wed Apr 29 17:43:46 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 (#580) [ci skip]. commit 437bb3000097f9ee746d4aeece6cc664baa4c07d Author: Alan Garny Date: Wed Apr 29 17:43:04 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 (#580) [ci skip]. commit 0b2a705f1a181f1042da6edc748f9ed90fe1a71a Author: Alan Garny Date: Wed Apr 29 17:37:37 2015 +0200 Documentation: slight update to the OpenCOR version of the user documentation [ci skip]. In the previous OpenCOR version of the user documentation, some images were not shown in the SingleCellPlugin help. Not sure it’s worth releasing a 0.4.1 of OpenCOR just for that though… commit 76bfe15f66cce385df826bf4abfde461159682ff Author: Alan Garny Date: Wed Apr 29 17:20:44 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 (#580) [ci skip]. commit 93c03b2c98d920294f7c5df39895cc3b66f28ca0 Author: Alan Garny Date: Wed Apr 29 16:59:21 2015 +0200 Some minor cleaning up [ci skip]. commit 7f2bdeee6728a7ea3d55647c10aac2177c4f1f50 Author: Alan Garny Date: Wed Apr 29 16:35:59 2015 +0200 QScintilla plugin: done upgrading to version 2.9 (closes #598). commit 975c2188d5ab81622d89f918df209762c9643b5f Author: Alan Garny Date: Wed Apr 29 16:21:14 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 (#598) [ci skip]. commit 00f1236d6dda28bdb0b311355f3006cab7280586 Author: Alan Garny Date: Wed Apr 29 16:15:58 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 (#598) [ci skip]. commit 03862fe40eef60ae6cc131d13fd30348c8129324 Author: Alan Garny Date: Wed Apr 29 16:06:37 2015 +0200 Back to generating snapshots [ci skip]. commit 1fd00cf8f8bd19fc7bf30780cd74d13390077d11 Author: Alan Garny Date: Wed Apr 29 16:04:42 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 (#598) [ci skip]. commit 5e76221ae12ef95e5326781c26fca910be130983 Author: Alan Garny Date: Wed Apr 29 14:50:05 2015 +0200 Version 0.4. commit d25761b9288b80fed2a5073fbcdf236f8d87c1d2 Author: Alan Garny Date: Wed Apr 29 13:26:35 2015 +0200 Slight update to the developer documentation [ci skip]. commit cc7afe8f2b4b342d8443cf4d68344091d84e9f14 Author: Alan Garny Date: Wed Apr 29 10:36:12 2015 +0200 User documentation: added an "How to get started" section (closes #521). commit d581e1b6acd7482d2fa7047ab7e6e8f8a68a66eb Author: Alan Garny Date: Tue Apr 28 19:53:18 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit a3d9a14cb00055a707aed24afa1ef0d323da201f Author: Alan Garny Date: Tue Apr 28 18:45:14 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit d6775f2eb6a5f809a046a510df9b9fe00bbf2b36 Author: Alan Garny Date: Tue Apr 28 16:04:05 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 7cb45194e0868bfd19062913783502b68ea38cad Author: Alan Garny Date: Tue Apr 28 10:45:52 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 987612a4b3f31b385968db6d78d24ca932db5ebe Author: Alan Garny Date: Tue Apr 28 10:40:28 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 2323e3148b460ebb5aee4e99cb3dad9bac187498 Author: Alan Garny Date: Tue Apr 28 09:51:17 2015 +0200 Central widget: display a warning message if a file (incl. remote file) cannot be opened [ci skip]. commit 822883f5e1bd69c22bb57b7a2b72b934800953b8 Author: Alan Garny Date: Tue Apr 28 09:45:50 2015 +0200 Some minor cleaning up [ci skip]. commit c701a35765c344316d7ff31d430f08f791420b84 Author: Alan Garny Date: Mon Apr 27 21:45:07 2015 +0200 Some minor cleaning up [ci skip]. commit 024879ff16a8e47e2d9821f6f3649a89804f9d62 Author: Alan Garny Date: Mon Apr 27 20:26:08 2015 +0200 Central widget: display a warning message if a file (incl. remote file) cannot be opened [ci skip]. commit 2b1b08b46378a6dddb08222ad8e26ad43e322229 Author: Alan Garny Date: Mon Apr 27 20:02:42 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 56fbd215904148630462214e4d1efc2454a9c350 Author: Alan Garny Date: Mon Apr 27 18:47:15 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit e4414386fba64214117dd928b1da3f3b3efa8d95 Author: Alan Garny Date: Mon Apr 27 18:00:19 2015 +0200 Some minor cleaning up [ci skip]. commit 5e7ee45ec5048e887cb0b7b82f39b1966cdfcfca Author: Alan Garny Date: Mon Apr 27 16:50:14 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 37cd00280a7e1657249829a50d61b145bf658d57 Author: Alan Garny Date: Mon Apr 27 16:30:59 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 6dadacc51dc00c310e1f4419b2cf621a0ee47328 Author: Alan Garny Date: Mon Apr 27 16:04:51 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 153887e1bbe84e6e00ac7e3f082d573e113678d0 Author: Alan Garny Date: Mon Apr 27 15:43:47 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 5ed7c8c2ffe773570d9fa6640a33ebd80860259a Author: Alan Garny Date: Mon Apr 27 15:10:04 2015 +0200 User documentation: some work on adding an "How to get started" section (#521) [ci skip]. commit 620d4aafefbd7746053bd0636eacdecf5ea1f5d5 Author: Alan Garny Date: Mon Apr 27 14:23:10 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 95cfb73f853515deff94932d0218ff698d695086 Author: Alan Garny Date: Mon Apr 27 13:27:14 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c118882286a55d64f32c227a6a0cc4fd3b94468d Author: Alan Garny Date: Mon Apr 27 13:07:03 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7de6c040da73f9d49ef54ae3b7570c9c941cde04 Author: Alan Garny Date: Mon Apr 27 11:41:51 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit fe8447d47470ffb8a95372142ac597ecc1ea8f20 Author: Alan Garny Date: Mon Apr 27 11:37:42 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit d41ed2aa5f3993392ce62020acb58a378f5631f3 Author: Alan Garny Date: Mon Apr 27 10:33:27 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 9bbfdcba465e91ed5d67396cb73ff216144a2c0e Author: Alan Garny Date: Mon Apr 27 09:08:35 2015 +0200 Some minor cleaning up [ci skip]. commit f4572a961f66bcc327553c599014bf19b91a1a70 Author: Alan Garny Date: Sun Apr 26 17:04:23 2015 +0200 Some minor cleaning up [ci skip]. commit 3213b7410221f39f6e2ed8f4118d2d9d5c8322f6 Author: Alan Garny Date: Sun Apr 26 16:49:02 2015 +0200 Some minor cleaning up [ci skip]. commit 4e71b87630387721c1743ab3751b91a678838471 Author: Alan Garny Date: Sun Apr 26 10:36:30 2015 +0200 Some minor cleaning up [ci skip]. commit 6c94d21fc2e4946a2e13a861396e20c61f08f950 Author: Alan Garny Date: Sat Apr 25 11:00:57 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6226ce1acdb4f79654789408e4e40d8f22e1cd18 Author: Alan Garny Date: Sat Apr 25 06:59:27 2015 +0400 Some minor cleaning up [ci skip]. commit 040aafbd73407ebad45d813ecfe5351b05bf9581 Author: Alan Garny Date: Sat Apr 25 06:55:41 2015 +0400 Developer documentation: slight update following the release of Qt Creator 3.4.0 [ci skip]. commit ac5286b242ec7de42932793c6987f14ebc50b26d Author: Alan Garny Date: Thu Apr 23 13:24:37 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit d234887045f73abc1b980f20dc14c7f1901091a1 Author: Alan Garny Date: Thu Apr 23 12:58:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 82bade5a1873331a54c6e6ad478b9b1ae03e9000 Author: Alan Garny Date: Thu Apr 23 12:14:00 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c69999c75e99aa1b2ed2b9fb0953600759a1b4af Author: Alan Garny Date: Thu Apr 23 10:55:01 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 461de235974aa6e247dc166da29e3d95c7dc846f Author: Alan Garny Date: Wed Apr 22 19:14:20 2015 +1200 Developer documentation: slight update following the release of Xcode 6.3.1 [ci skip]. commit 621373ab969d1a60da690da98b51d0543c6f9781 Author: Alan Garny Date: Wed Apr 22 17:54:10 2015 +1200 CellML Text view: fixed an issue with OpenCOR crashing when the CellML Text view gets updated when it'\''s not visible anymore (closes #601). commit a02bb3674542b510c11673625847d54b88b62093 Author: Alan Garny Date: Wed Apr 22 16:54:48 2015 +1200 CellML Text view: didn'\''t update the data information when initialising a new file [ci skip]. This wasn’t ‘critical’, but not neat either! commit e413f89f8321f6b466c283bc10c343a2a75595ae Author: Alan Garny Date: Wed Apr 22 16:53:32 2015 +1200 Some minor cleaning up [ci skip]. commit 4f4367bef65d153c97bd8de4d7dd87096a1525f1 Author: Alan Garny Date: Wed Apr 22 16:27:10 2015 +1200 Some minor cleaning up [ci skip]. commit 1eced659ad344bfa95ac70b12b0968e058364b47 Author: Alan Garny Date: Wed Apr 22 16:06:22 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7cfc93b8eaa336c5e0f3c38e7fcc33fffe8b1561 Author: Alan Garny Date: Wed Apr 22 16:02:14 2015 +1200 Some minor cleaning up [ci skip]. commit 1f05a6d27f34daa2d793293dbda9d461d2c172ff Author: Alan Garny Date: Wed Apr 22 15:44:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 49f048985a09862ae12e065ad807b38930e08e2b Author: Alan Garny Date: Wed Apr 22 15:39:06 2015 +1200 CellML Text view: allow "encapsulation" and "containment" in a group definition to have a cmeta:id (closes #600). commit 7aeab2ea4b94baa6aa0f37f5f85fd2efe853088f Author: Alan Garny Date: Wed Apr 22 15:14:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 3427dba478b4a1c52492852c051b6e2252493eff Author: Alan Garny Date: Wed Apr 22 14:57:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 0c84c4c29ed21bb62d3fa065bac6fd4bb66d04c1 Author: Alan Garny Date: Wed Apr 22 13:57:43 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8a56327af3ee4588c51a95eacbc9fbf13924bb34 Author: Alan Garny Date: Wed Apr 22 12:51:28 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 140c7d2481c9d935ecacf231a4a52899dcafaa2c Author: Alan Garny Date: Wed Apr 22 11:57:49 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 9d3205821e105d26fb608e2e9cd59952e379bfbb Author: Alan Garny Date: Wed Apr 22 11:53:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit f3a55fbdd11b9d46f51873e5a43e4cbbc7e709e0 Author: Alan Garny Date: Wed Apr 22 11:44:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit d73ec92e5dcceedfc8a5f90d311b256bc749f7c1 Author: Alan Garny Date: Wed Apr 22 11:11:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit dca0be41018901ffc3537b05aa9ed658b6a31f74 Author: Alan Garny Date: Wed Apr 22 10:54:49 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4ee1ead9b1b3f43c86353b2312ff4cd463e55c25 Author: Alan Garny Date: Wed Apr 22 01:50:20 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. Our use of KaTeX in our documentation generates some warnings that read: QCoreTextFontDatabase::fontEngine: CGFontCreateWithDataProvider failed Not sure why they get generated since KaTeX is able to render the equations. Whatever the case, we don’t want to see debug/warning message when in release mode. commit 66d7a1bd4876871aab3b37aeb160c481c97fdc7a Author: Alan Garny Date: Wed Apr 22 00:35:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 5cbd61516c40ebddbad130ffe0a365589233d5dd Author: Alan Garny Date: Tue Apr 21 23:56:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8f4bd22e7f259a89c3489c16b1e91c1feedf0fc1 Author: Alan Garny Date: Tue Apr 21 23:51:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4898aac2c8f32c30efa4f20a1c35218e327e5f89 Author: Alan Garny Date: Tue Apr 21 23:49:56 2015 +1200 Documentation: add KaTeX for math typesetting support (closes #599). commit de7bb6b66c0c4c94d44553949b5835fa9722f941 Author: Alan Garny Date: Tue Apr 21 23:48:54 2015 +1200 Documentation: add KaTeX for math typesetting support (closes #599). commit a1c68868cb2f167b1ae400d95241b2efc6d59899 Author: Alan Garny Date: Tue Apr 21 16:35:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit ba23723249058e19bf0374d67e9e070414d9f4eb Author: Alan Garny Date: Tue Apr 21 16:00:00 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6110e23e3da677c447cd22b330fc381f70244452 Author: Alan Garny Date: Tue Apr 21 12:57:02 2015 +1200 Some minor cleaning up [ci skip]. commit fdaf57ecbdbb1bb010fafb1ce59aaf5ec1775338 Author: Alan Garny Date: Tue Apr 21 12:56:32 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7250eba6856225dd7cbe0ac74b72fed0839221d3 Author: Alan Garny Date: Tue Apr 21 12:25:03 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c02c2b8485984fa2c4f56540c4400585a694826d Author: Alan Garny Date: Tue Apr 21 12:08:25 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit fcc5d3a59e09fc3cc864ac4d4b524478b57e55ed Author: Alan Garny Date: Tue Apr 21 11:24:34 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit ce168169f2427e20528be758835dc41d9b3bfc2b Author: Alan Garny Date: Tue Apr 21 11:20:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4f7ccdc34c2a80c4b004e2df3e6b123b90377bf3 Author: Alan Garny Date: Tue Apr 21 10:38:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 335173bd7257de1a09730b9dffef3dc22c2dfe0b Author: Alan Garny Date: Mon Apr 20 19:15:29 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8edf72b00fbeb4d33e9ff89965267d846619c9aa Author: Alan Garny Date: Mon Apr 20 19:12:24 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8b05bd8da2bac9827b01ec9a821e3947bda1875c Author: Alan Garny Date: Mon Apr 20 18:59:05 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit eb757662458e124909ca72563a597ba9595b066c Author: Alan Garny Date: Mon Apr 20 18:06:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 5d79ea16773cb77422a21603741534692e15818d Author: Alan Garny Date: Mon Apr 20 16:46:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 5964fdbe49b7cd105793fd40f29eedf423a38205 Author: Alan Garny Date: Mon Apr 20 15:26:11 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 307603021e12bc78c4b9b80c0c2f140e9e094447 Author: Alan Garny Date: Mon Apr 20 15:11:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 5c9b7e1cf77de6aa71b15caeb24dce459006d4e3 Author: Alan Garny Date: Mon Apr 20 14:55:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c1723425d656804f927b6ed841404efd8ecedc4d Author: Alan Garny Date: Mon Apr 20 14:37:35 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 819485d839a4f14c55edc000225b5d13910ad2a8 Author: Alan Garny Date: Mon Apr 20 14:31:26 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit f5ab58665760625863e6d79f2989e438c7274549 Author: Alan Garny Date: Mon Apr 20 14:21:15 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8481fd46392a347b8b4810f8602da72882703070 Author: Alan Garny Date: Mon Apr 20 14:10:33 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4b1380da677be25976459bfac233cbf3d0024128 Author: Alan Garny Date: Mon Apr 20 13:58:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit d8c470a8c4351af982226d118008db2b69008400 Author: Alan Garny Date: Mon Apr 20 13:23:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6e308bdaf941da39ef68fe88bd98dced2d7c5097 Author: Alan Garny Date: Mon Apr 20 13:16:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7d116cca94e266a3263a8ebd154b977a5bb23291 Author: Alan Garny Date: Mon Apr 20 13:10:16 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit e0181d4cd617eb42a8aa38a4d153fdb80fd1cfc4 Author: Alan Garny Date: Mon Apr 20 11:59:27 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit b0879171f41980125f1e7dda330c67a7d206e7ec Author: Alan Garny Date: Mon Apr 20 11:31:43 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit aa07bc1aca42b1f3c6c00a67bfff9cadfcf01c49 Author: Alan Garny Date: Mon Apr 20 11:01:21 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4281c14a78d8eb01dbb73a6c188be718d5058be0 Author: Alan Garny Date: Mon Apr 20 10:38:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit a5eb1728dd4e25128ebbf911f2faf65fa5b65598 Author: Alan Garny Date: Mon Apr 20 10:27:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 101bba37cc8f7c59c36f6854a01b9656dd06aee3 Author: Alan Garny Date: Mon Apr 20 00:48:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit f546e1c08235a332b04a2643cc09ff4c9e375517 Author: Alan Garny Date: Mon Apr 20 00:45:35 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 047494ca9bdf1fc981a8e652ba833460879d7c81 Author: Alan Garny Date: Mon Apr 20 00:30:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 36d6bf330d897e47c8e6e506f8fe9938a7f8985f Author: Alan Garny Date: Sun Apr 19 21:11:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 87f80ac1cb2fc70cb081444751490de887bb56fc Author: Alan Garny Date: Sun Apr 19 20:19:42 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 07d7b905865cf0b53e6a41ca723883ab0e616897 Author: Alan Garny Date: Sun Apr 19 20:16:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 0efee808a693a4267d107f51e5a75a7bd25cfd8d Author: Alan Garny Date: Sun Apr 19 19:58:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6091f2e664740ed6d21bde9c5b3cd1b2a14e3c11 Author: Alan Garny Date: Sun Apr 19 16:33:06 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit f38fbbbd727bf06bbeca2cf305382f676f13b8df Author: Alan Garny Date: Sun Apr 19 14:01:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c7f3ad4a73c17fe0e475e2a6daee790e48bc83b1 Author: Alan Garny Date: Sun Apr 19 13:43:15 2015 +1200 Some minor cleaning up [ci skip]. commit 98591e194122bc8701860c34aa6dc69001fc4b9d Author: Alan Garny Date: Sun Apr 19 11:38:07 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 54326616af2dcf8877948751cd392a9f25f12a43 Author: Alan Garny Date: Sun Apr 19 00:25:05 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit e8fe431ca1caeb5bf71a559c5c54063d18521fd4 Author: Alan Garny Date: Sun Apr 19 00:09:22 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 146f30c55a60f881d2523264924bdc47763af315 Author: Alan Garny Date: Sat Apr 18 23:52:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 9166cb238fdb993e34578121cf45b25fd58355de Author: Alan Garny Date: Sat Apr 18 23:46:43 2015 +1200 Some minor cleaning up [ci skip]. commit ca736871557054d3aab033587cee9d28b53b4dba Author: Alan Garny Date: Sat Apr 18 23:02:45 2015 +1200 Some minor cleaning up [ci skip]. commit 174b44b264283a467c102240f0c401a60696cb4f Author: Alan Garny Date: Sat Apr 18 22:59:06 2015 +1200 Some minor cleaning up [ci skip]. commit a327c3cd5d7164f6b301d9068e1d10a88a09e6e9 Author: Alan Garny Date: Sat Apr 18 19:12:44 2015 +1200 Some minor cleaning up [ci skip]. commit 044409d44b56fb4b8ce0ee77f38c86a09d6836e3 Author: Alan Garny Date: Sat Apr 18 19:06:22 2015 +1200 Some minor cleaning up [ci skip]. commit cee438d83007378c0458998255509b5971589966 Author: Alan Garny Date: Sat Apr 18 18:55:29 2015 +1200 Some minor cleaning up [ci skip]. commit e356506317be9c7071664450b6a7e0ad4bd64d58 Author: Alan Garny Date: Sat Apr 18 17:34:18 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7709e8e00dc1c4ab132994528754ee3e7d789f78 Author: Alan Garny Date: Fri Apr 17 15:57:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 813efd01c053ce716d134539ade33abdab89d127 Author: Alan Garny Date: Fri Apr 17 14:53:15 2015 +1200 Some minor cleaning up [ci skip]. commit 62b0fee4509593bd775abaadd3077d66a06aa600 Author: Alan Garny Date: Fri Apr 17 14:51:48 2015 +1200 Documentation: some work on updating it in preparation for 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commit 1e3173221c82fb639f2e03e0a30c8a304cc113be Author: Alan Garny Date: Fri Apr 17 13:41:57 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit ee58efe10e42afc7f0a985aca89f0472be0cfec3 Author: Alan Garny Date: Fri Apr 17 13:39:31 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit b7f8de2b85b797035526ec55ed92da7d1dc873a9 Author: Alan Garny Date: Fri Apr 17 13:37:37 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 4c9fee818391d29e014ec5ccfba49b82d460c23c Author: Alan Garny Date: Fri Apr 17 13:35:11 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit cfa68124f447a911ea86654ba71b2e7f37be0434 Author: Alan Garny Date: Fri Apr 17 13:28:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit a4593d8c705fb72446f71f748ea37c9c146568cd Author: Alan Garny Date: Fri Apr 17 13:24:12 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit c0b197edd2692bff28a4747bf80ebd63ef13fe20 Author: Alan Garny Date: Fri Apr 17 10:48:25 2015 +1200 Some minor cleaning up [ci skip]. commit d5fae9eeba74c63a39bdea6358072e03b94e0ea4 Author: Alan Garny Date: Fri Apr 17 00:19:08 2015 +1200 Some minor cleaning up [ci skip]. commit 9f06e1541abf870cc22cd8fc6a6445af0090ea4a Author: Alan Garny Date: Thu Apr 16 18:12:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 0059aa05b67578f7a20c23e3ced74a5f6049ef38 Author: Alan Garny Date: Thu Apr 16 17:42:23 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit b599ce7beb05c639b175bbea0a4d8491c4e4eb1c Author: Alan Garny Date: Thu Apr 16 17:26:18 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 324c94502b652eef378e46e0cc81370a659229df Author: Alan Garny Date: Thu Apr 16 17:06:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 526b5334ebb5da61fc144779c82b6b35cfc3eb9c Author: Alan Garny Date: Thu Apr 16 16:53:47 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit a7b4cf08de9811789e9137d75a3c2d4909a921d9 Author: Alan Garny Date: Thu Apr 16 16:43:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 8067fd556f8edce8fc3d678e5661adfb866fa653 Author: Alan Garny Date: Thu Apr 16 14:58:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 2724f9779329b3148b8c8689f29730282cb1b86b Author: Alan Garny Date: Thu Apr 16 14:08:04 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 86dbc167860cf532accc03449bb2c1ffc3b64cdd Author: Alan Garny Date: Thu Apr 16 13:41:08 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6b80d4299aad4ed253d6e1132622a7b73585d7c5 Author: Alan Garny Date: Wed Apr 15 18:51:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 689ee74635866519681e0f3dddd2878c126cdda9 Author: Alan Garny Date: Wed Apr 15 18:42:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit f809f6dcff44262ac53dce1a47dcb43251ce01a2 Author: Alan Garny Date: Wed Apr 15 18:33:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 3147929b078ab50aeef2e7f6c013d49d99d4d10f Author: Alan Garny Date: Wed Apr 15 18:17:04 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 6f1b7cf980dc8bc3864f4f076976b15130d579bc Author: Alan Garny Date: Wed Apr 15 17:57:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7c41e9eb054c1dd6970e81f21acef4ce8e6fd2cf Author: Alan Garny Date: Wed Apr 15 16:49:56 2015 +1200 PMR window: now list published exposures rather than workspaces (closes #597). commit 66e0482565dd2d2ecfa3f760807f591deee5f2fc Author: Alan Garny Date: Wed Apr 15 15:28:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 7a8c17417b8c3c688634df2d9d33c9d7c4c59131 Author: Alan Garny Date: Wed Apr 15 12:03:24 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit db4a797fb6aaef199473cdb16335faf8da11dfa7 Author: Alan Garny Date: Wed Apr 15 11:53:15 2015 +1200 Getting ready for version 0.4 [ci skip]. commit 7c2f37ffb22a8dfbb030719b080bdfc37ae1c1f3 Author: Alan Garny Date: Wed Apr 15 11:14:32 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 (#594) [ci skip]. commit 2cbc81877cc2cc8bf7ba462265ebe5cd5fb173b5 Author: Alan Garny Date: Tue Apr 14 19:24:10 2015 +1200 CellML Text view: don'\''t generate {} for an empty cmeta:id value (closes #595). commit fcfc07ac2fb497be7978a7e6df6ba951a08fb6d4 Author: Alan Garny Date: Fri Apr 10 00:23:52 2015 +1200 Slight update to the developer documentation (following the release of Xcode 6.3) [ci skip]. commit 1c612954217060072ec6da65ebd218966cba07e2 Author: Alan Garny Date: Tue Apr 7 14:59:42 2015 +1200 New snapshots. commit b4d48f6d933478e1d9d0f0ce917a0e69f9645bd6 Author: Alan Garny Date: Tue Apr 7 14:48:50 2015 +1200 Some minor cleaning up [ci skip]. commit a0edc749a2c8839b9e648933322d98f6ae33b521 Author: Alan Garny Date: Tue Apr 7 14:13:28 2015 +1200 Some minor cleaning up [ci skip]. commit a300289503c7642fe6de89cc37c5e46f149c73cb Author: Alan Garny Date: Tue Apr 7 14:08:57 2015 +1200 Some minor cleaning up [ci skip]. commit c794ac45a6fd6452316ff780807542fa9afef2f8 Author: Alan Garny Date: Tue Apr 7 11:46:32 2015 +1200 Main window: improved the way we initialise our status bar [ci skip]. commit adb962113069807720795be15b4f27ab27484db6 Author: Alan Garny Date: Tue Apr 7 10:09:16 2015 +1200 New snapshots. commit 6f1804d1e1bc9e778a67290bc26dd8ebe01582ea Author: Alan Garny Date: Mon Apr 6 16:39:14 2015 +1200 CellML Text view: now allow comments within an equation (closes #582). commit e288037f2d5ef9dec18b4312ef2993b138ee2845 Author: Alan Garny Date: Mon Apr 6 16:02:01 2015 +1200 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit bd7a55e3f2c35cbcbe3f048b1c99b2ad7892d691 Author: Alan Garny Date: Mon Apr 6 14:10:58 2015 +1200 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit 457528f77b5cd7ea803816ac71973a50dd1c7f37 Author: Alan Garny Date: Mon Apr 6 14:07:29 2015 +1200 CellML Text view: add forgotten to add some tests for the remainder function (#573) [ci skip]. commit 7107634cb7ca4f800d3fbdcef01e40e78f1253a4 Author: Alan Garny Date: Mon Apr 6 12:53:07 2015 +1200 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit 8176b85c82e03e5063e5debcdccc740563452177 Author: Alan Garny Date: Mon Apr 6 12:18:44 2015 +1200 Some minor cleaning up [ci skip]. commit af7380833ade1f988da5716bb8822b895bb85eca Author: Alan Garny Date: Mon Apr 6 09:10:42 2015 +1200 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit 82482c9ff634438c2494d34a76e4a83a1687fa43 Author: Alan Garny Date: Sat Apr 4 23:07:37 2015 +1300 Some minor cleaning up [ci skip]. commit fdc51a4a52467330c57a9f911fadf991510fb1d9 Author: Alan Garny Date: Sat Apr 4 17:09:22 2015 +1300 CellML Text view: some minor improvement to our tests. commit 3446c3c7853bf8f99c810b219e3cbd95c747e75c Author: Alan Garny Date: Sat Apr 4 16:32:16 2015 +1300 Slight update to the user documentation [ci skip]. commit e4018a835f8d03906c8b76940e54cd9cc5effc28 Author: Alan Garny Date: Sat Apr 4 16:31:52 2015 +1300 CellML Text view: some minor improvement to our tests. commit e7712ce6bf4bc1364e3c211bb5fa04819cdb4398 Author: Alan Garny Date: Sat Apr 4 15:19:59 2015 +1300 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit 7abe5089952d8921491701b6e0a81046f0135eff Author: Alan Garny Date: Fri Apr 3 10:53:32 2015 +1300 CellML Text view: slight improvements to our converter [ci skip]. commit 1cb6edc9e8b4a70b3b14e909f2a11bc1ba32361c Author: Alan Garny Date: Thu Apr 2 18:46:55 2015 +1300 Some minor cleaning up [ci skip]. commit 3c6fe00589ab5c85902e1db3778534fb07e92769 Author: Alan Garny Date: Thu Apr 2 18:44:33 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling multiline comments within a parameter block (closes #588). commit 765a0360747d67b65bfc74261f4a4f45473a4d28 Author: Alan Garny Date: Thu Apr 2 17:13:12 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling strings within a parameter block (closes #587). commit 3cbe8f852883c9eca8968e110d392b25dcc8123a Author: Alan Garny Date: Thu Apr 2 17:05:01 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling single line comments withing a parameter block (closes #585). commit 86e59fa90d940cad0f2c1804d4bab332dccb4963 Author: Alan Garny Date: Thu Apr 2 16:39:32 2015 +1300 CellML Text view: fixed an issue with the lexer crashing OpenCOR if the beginning of a parameter block is immediately followed by a multiline comment (closes #584). commit 5e9412221cf2dbcb465aaf5b667fc66be5582b1e Author: Alan Garny Date: Thu Apr 2 13:41:42 2015 +1300 Some minor cleaning up [ci skip]. commit 7d28e08759674775b66abb920759270b9b50618a Author: Alan Garny Date: Thu Apr 2 12:42:31 2015 +1300 LLVM 3.6: can once again get more than one CellML file to run on Windows 32-bit (closes #583). commit 7e0d6b9e3c41a09e2e27fb436a6e02a50d17e360 Author: Alan Garny Date: Thu Apr 2 12:30:23 2015 +1300 CellML Text view: some work on allowing comments within an equation (#582) [ci skip]. commit 19b5a217d6f9f9d81254a8c87485f285808b13df Author: Alan Garny Date: Thu Apr 2 10:54:50 2015 +1300 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit (#583) [ci skip]. commit 3d080694e6e646d890d58dcf28ccddefcc68a036 Author: Alan Garny Date: Thu Apr 2 10:53:29 2015 +1300 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit (#583) [ci skip]. commit 3de88fe54be64de1e6f2006c2250011f0c0f9644 Merge: a3e54528c c1295369f Author: Alan Garny Date: Wed Apr 1 23:24:00 2015 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit a3e54528cdfc87270fafb79d89ef1be07011332f Author: Alan Garny Date: Wed Apr 1 23:22:46 2015 +0200 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit (#583) [ci skip]. commit c1295369f1aeee2031b6db5d1f404211fe67461e Author: Alan Garny Date: Wed Apr 1 18:39:24 2015 +1300 Some minor cleaning up [ci skip]. commit 9a9668a95246ec4862bdc734786a1ef208b31333 Author: Alan Garny Date: Wed Apr 1 18:09:25 2015 +1300 Slight update to our downloads page [ci skip]. commit cac9400748bc7ba69d44df9a4af2ded18c9f0e82 Author: Alan Garny Date: Wed Apr 1 16:23:09 2015 +1300 Some minor improvements to the developer documentation [ci skip]. commit f3fce2d2e8a963f27f8e085c579775e605e6faaa Author: Alan Garny Date: Wed Apr 1 14:10:38 2015 +1300 New snapshots. commit a1f4d72e659110dea2c93038098a0555d25329c6 Author: Alan Garny Date: Wed Apr 1 14:03:41 2015 +1300 CellML Text view: can now render mathematical equations (closes #559). commit e874240bd07fdf66df70579cfe9c73a62127eebe Author: Alan Garny Date: Wed Apr 1 13:53:22 2015 +1300 Some minor cleaning up [ci skip]. commit 0b253753a04199f65e4653350fa4f7a193a657f9 Author: Alan Garny Date: Wed Apr 1 13:51:53 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 2ba8a7a88728ca334ce5fd19349a004137b9cfa1 Author: Alan Garny Date: Wed Apr 1 11:41:18 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit df38feee77af19cf21810d325494c00d82c4e071 Author: Alan Garny Date: Wed Apr 1 11:21:02 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 81b44be4486829b1fa39cacd68311066a98959ea Author: Alan Garny Date: Wed Apr 1 11:15:17 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 7273a58882ba9fe62c8999a462c4651da46de955 Author: Alan Garny Date: Tue Mar 31 14:50:53 2015 +1300 Some minor cleaning up [ci skip]. commit 88ca963eace2399c56a9db1427979f33b7cbbfe5 Author: Alan Garny Date: Tue Mar 31 14:39:54 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 87c3df454fef2fefb78cce0e607fd3aace4c0b9b Author: Alan Garny Date: Tue Mar 31 11:41:04 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 50c69f037d73e94fe71e65db0e3e073f6ff16604 Author: Alan Garny Date: Tue Mar 31 10:52:19 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 9c14ca9b2718070a10aebe4ec9e79b4ff1742087 Author: Alan Garny Date: Tue Mar 31 10:20:48 2015 +1300 Minor updates to the developer documentation [ci skip]. commit b5c384876824dcdaccc08cdebde7cec1bc61933c Author: Alan Garny Date: Tue Mar 31 09:25:31 2015 +1300 Some minor cleaning up [ci skip]. commit 39767f36aa1cc16a44f0b769930407115a060229 Author: Alan Garny Date: Mon Mar 30 18:14:40 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 1f5af92f626ac3c6974172d8812aa49b18c78a83 Author: Alan Garny Date: Mon Mar 30 15:03:40 2015 +1300 Declare our regular expressions as static const [ci skip]. This is because building a regular expression engine can be ‘time consuming’, so no need to waste time doing it every single time (should a regular expression be used many times). commit d23ffe51f9ee7485c891b8f65a04eecc710a92b6 Author: Alan Garny Date: Mon Mar 30 13:44:58 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 34384fdc2072b142b149294f28da90be8225c424 Author: Alan Garny Date: Mon Mar 30 11:52:23 2015 +1300 CellML Text view: slight improvements to the converter [ci skip]. commit db2a12044a9cf9f863a577a7aae5b7b4256a1270 Author: Alan Garny Date: Mon Mar 30 10:19:15 2015 +1300 Some minor cleaning up [ci skip]. commit 6fecebb86cd9807887ac1b74b4fe905525358a4d Author: Alan Garny Date: Mon Mar 30 09:26:32 2015 +1300 Some minor cleaning up [ci skip]. commit b15b9d6265372b789a7d54fafe276299166beece Author: Alan Garny Date: Sat Mar 28 08:12:15 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit eb7d3b5b78d8ab89f70a06c773a3cc6782e0cd30 Author: Alan Garny Date: Sat Mar 28 07:47:42 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 27c48cd730ea56c696db1f95757a74a4203c4414 Author: Alan Garny Date: Fri Mar 27 19:23:54 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 4d5b21a677b77d8f561797dded48909f1778766d Author: Alan Garny Date: Fri Mar 27 17:54:55 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 04a68f0b3cdd92d4d0742b3c97b874122dfdad09 Author: Alan Garny Date: Fri Mar 27 17:14:50 2015 +1300 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 30e4b330de08ed8bcb4b00fa6897fd9d4e4877b8 Author: Alan Garny Date: Fri Mar 27 17:14:37 2015 +1300 Some minor cleaning up [ci skip]. commit 2d99586c526d1a0939f3050982a2dcc088896d16 Author: Alan Garny Date: Fri Mar 27 14:01:57 2015 +1300 Minor update to the developer documentation [ci skip]. commit 7a29d0b0da3d6180588cc48dcadad9b42991826a Author: Alan Garny Date: Fri Mar 27 13:21:48 2015 +1300 Single Cell view: fixed an issue with simulation properties not always being tracked properly (closes #579). commit 5cd25609b1dfeb94943c98433eebbf760ab695f6 Author: Alan Garny Date: Fri Mar 27 00:05:05 2015 +0100 Data stores: made them dynamically available to the user (closes #451). Addressed a Windows build issue. Also some minor cleaning up. commit b53186b275776c466853666ffe33e36461ec0ae9 Author: Alan Garny Date: Fri Mar 27 11:03:54 2015 +1300 Data stores: made them dynamically available to the user (closes #451). commit f4ff50c75a8ed8e590453e87a66b2a1651b92c96 Author: Alan Garny Date: Thu Mar 26 21:04:28 2015 +1300 Data stores: make them dynamically available to the user (#451) [ci skip]. commit f52e3d3e6b5b54ee7806aec24e0e824db935047c Author: Alan Garny Date: Thu Mar 26 18:51:39 2015 +1300 Data stores: make them dynamically available to the user (#451) [ci skip]. commit 255556ab55865295f3b0ab8ff26d3b5b616168f7 Author: Alan Garny Date: Thu Mar 26 18:15:09 2015 +1300 Data stores: make them dynamically available to the user (#451) [ci skip]. commit e64bd46e08ad3a197e472adff3572981c016d007 Author: Alan Garny Date: Tue Mar 24 06:40:56 2015 +0400 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 41582ab83760b0eaaaaa68c9f8b7b1d4e4c99b87 Author: Alan Garny Date: Tue Mar 24 05:24:24 2015 +0400 CellML Text view: some work towards rendering mathematical equations (#559) [ci skip]. commit 4a55d9162b68ca855a51fa442bb53a521c26f181 Author: Alan Garny Date: Tue Mar 24 05:06:16 2015 +0400 Some minor cleaning up [ci skip]. commit b1dee4b6ad5c87008d1b74509039bad1a9d41aed Author: Alan Garny Date: Tue Mar 24 04:07:15 2015 +0400 Some minor cleaning up [ci skip]. commit af966d47d9788b9aeda1961d25ca79be32af223a Author: Alan Garny Date: Fri Mar 20 18:53:18 2015 +0100 CellML Text view: allow for equations to have a cmeta:id (closes #574). commit a79cf48e4069901796335a1210712426e7661ee3 Author: Alan Garny Date: Fri Mar 20 18:46:11 2015 +0100 Developer documentation: some minor cleaning up of the CellML 1.1 files [ci skip]. commit 3e33e4f0a93098e4fbbee8fcdc551f7bf340ddb7 Author: Alan Garny Date: Fri Mar 20 18:09:53 2015 +0100 CellML Text view: added support for the remainder function (closes #573). commit faa15d622881c8254f44555bfc0ebb05555b8a7b Author: Alan Garny Date: Fri Mar 20 18:06:51 2015 +0100 CellML Text view: properly parse a two-argument function [ci skip]. commit 8895f5440245ac70ad50e6f3d6f5bd920a14a7e1 Author: Alan Garny Date: Fri Mar 20 17:28:09 2015 +0100 Some minor update to the developer documentation [ci skip]. commit 16f84d874ccc4a68eea549eb7209eac348201b82 Author: Alan Garny Date: Fri Mar 20 17:24:44 2015 +0100 File handling: fixed an issue with the current view getting wrongly updated when modifying another file outside of OpenCOR (closes #577). commit 989b15a983f8f96457cf28a3d8042de4fac66b2a Author: Alan Garny Date: Fri Mar 20 17:23:34 2015 +0100 Some minor cleaning up [ci skip]. commit dce3099d3b4458adea0a0e4a8d095e48a582a209 Author: Alan Garny Date: Fri Mar 20 17:10:34 2015 +0100 Equation renderer: render the remainder function as rem(a, b) rather than a mod b (closes #578). commit 66fb1981e768919f512ed8b6a3d6cb22122fae82 Author: Alan Garny Date: Fri Mar 20 16:41:11 2015 +0100 File handling: fixed an issue with the current view getting wrongly updated when modifying another file outside of OpenCOR (closes #577). commit 9257752181e5960631f2eb8d1e09ce3e6602fb91 Author: Alan Garny Date: Fri Mar 20 16:11:39 2015 +0100 Core plugin: properly retrieve the view plugin associated with a given file [ci file]. commit 46bee873fc45b12c4e2ad0f35b4a048c5ff79615 Author: Alan Garny Date: Sat Mar 14 20:02:01 2015 +0100 CellML support: make sure that updating a runtime works fine for an invalid DAE model [ci skip]. commit 1dd5ba849102843d66c6993b8429b2c7c4db1d9c Author: Alan Garny Date: Sat Mar 14 20:00:17 2015 +0100 Some minor cleaning up of the models in our developer documentation [ci skip]. commit 7679354e02c6b5f6f2b8f18733be439450a2c5ca Author: Alan Garny Date: Sat Mar 14 19:57:12 2015 +0100 Some minor cleaning up of the models in our developer documentation [ci skip]. commit f5db444fe0859e367202b3c1bd35ba04b18d890b Author: Alan Garny Date: Sat Mar 14 19:39:30 2015 +0100 Some minor cleaning up of the models in our developer documentation [ci skip]. commit af8fa0371673abb0f91fde3ec665a0b0956c837d Author: Alan Garny Date: Fri Mar 13 19:08:33 2015 +0100 CellML editing views: keep track of the cursor’s position when reformatting the contents of the editor (#154 & #560) [ci skip]. commit 14af5a7cb69b3779454fc55d5f6ad85c5273985e Author: Alan Garny Date: Fri Mar 13 19:04:26 2015 +0100 Oops, forgot to update our tests! commit 557ae587547571802d81a05dc27d5c6eef5c0a0a Author: Alan Garny Date: Fri Mar 13 18:07:08 2015 +0100 CellML Text view: can now reformat the contents of the editor (closes #560). commit e82f0632d7d8b758276425e171857523e6697612 Author: Alan Garny Date: Fri Mar 13 17:51:29 2015 +0100 CellML Text view: can now reformat the contents of the editor (#560) [ci skip]. commit 91fe9c7576f452bb9748d571dd653a6fdfa89646 Author: Alan Garny Date: Fri Mar 13 17:40:43 2015 +0100 Slight update to the user documentation [ci skip]. commit d74579ba232280375cb248ec2247acca55603e9e Author: Alan Garny Date: Fri Mar 13 17:37:44 2015 +0100 Raw CellML view: ensure that warnings are always displayed, i.e. not only when there are also errors [ci skip]. commit d58493bb15f38cc752e411baf69a532b642c0a4f Author: Alan Garny Date: Fri Mar 13 17:31:04 2015 +0100 Some minor cleaning up [ci skip]. commit 1ce3731da6ef0110b2aa027e4460fa666404ac60 Author: Alan Garny Date: Fri Mar 13 17:28:14 2015 +0100 Raw CellML view: can now reformat the contents of the editor (closes #154) [ci skip]. commit 47da6d05f919d3301bb9318e6cc5624e96478da1 Author: Alan Garny Date: Fri Mar 13 16:37:51 2015 +0100 Raw CellML view: can now reformat the contents of the editor (closes #154). commit 3ca96d3ff190e74e554636678eb86b13ef9b62ed Author: Alan Garny Date: Fri Mar 13 15:15:31 2015 +0100 CellML editing views: some work on allowing the reformatting of the contents of the editor (#154 & #160) [ci skip]. commit 062f386ec80f3e8f5d93b8d67d18237bb30c96d4 Author: Alan Garny Date: Fri Mar 13 15:12:57 2015 +0100 Main GUI: make sure that the language menu item is always first in the tools menu [ci skip]. commit 9ef0cbd0cce8d62bdb7386835a5d73d20162bed0 Author: Alan Garny Date: Fri Mar 13 13:54:39 2015 +0100 Slight update to the developer documentation. commit be13eb1275d5f7ec09e8598a9983c4aa06bb19ae Author: Alan Garny Date: Fri Mar 13 11:29:38 2015 +0100 QScintilla support: now auto-indent [ci skip]. commit 304bf896db5f935bb5980f3ef277427b43c6667b Author: Alan Garny Date: Fri Mar 13 09:02:22 2015 +0100 Travis CI: now use CMake 3.2.1 on Linux. commit c97280e532f3ff1abdbd326bcd4ac1f541cd574d Author: Alan Garny Date: Thu Mar 12 11:56:57 2015 +0100 CellML Text view: some work on providing CellML validation for the CellML text format (#532). commit b30d80c6b3f5d52992327bddf5012e20a6751d67 Author: Alan Garny Date: Thu Mar 12 10:29:00 2015 +0100 GUI: use Ctrl+T for checking the (CellML) validity of a file [ci skip]. commit 23c73b2ec6f398a749057bd34de0d57504605ab7 Author: Alan Garny Date: Thu Mar 12 09:41:08 2015 +0100 GUI: some minor cleaning up [ci skip]. commit db2472b4bc217c53f817b1613fdfefa5c6db4a89 Author: Alan Garny Date: Wed Mar 11 15:07:06 2015 +0100 Tests: removed our QCOMPARELIST macro. It proved to be very slow for some tests (parsing/conversion of/from the CellML Text format). It could have been improved, but in the end the default comparison of QStringList objects seems sufficient when lists don’t have the same contents (despite what I seemed to remember; could that have been improved in Qt 5.4.1?). commit 00ea17361f7aa39583975248d089dc768b0ffeee Merge: 1727587d9 8387a46e7 Author: Alan Garny Date: Wed Mar 11 13:23:53 2015 +0100 Merge pull request #572 from opencor/llvm3.6 LLVM: upgraded to version 3.6 (closes #558). commit 8387a46e797467fbf116b92786ee6bfb5efb98c9 Author: Alan Garny Date: Wed Mar 11 13:02:02 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 15762f3e430a4fa96b3356ac75e4d8c0e9c270fc Author: Alan Garny Date: Wed Mar 11 12:50:48 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 4430339cd32ddaba454acca1ef4aef171b28bb99 Author: Alan Garny Date: Wed Mar 11 09:35:52 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit ac4817715c85be19f1e60cfaecd18ae4dfa02a45 Author: Alan Garny Date: Tue Mar 10 23:48:22 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 50a8428e4d40687a541920546ce9690caab84066 Author: Alan Garny Date: Tue Mar 10 19:37:26 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 1878ebcfd713b1e9fe7e3203fc7aa2c44b3e8844 Author: Alan Garny Date: Tue Mar 10 19:04:27 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 2eda18ceedb8554133c239c71a563b36790124f4 Author: Alan Garny Date: Tue Mar 10 18:33:09 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 4992a681804cacc91205eee31650fcb792e1aca0 Author: Alan Garny Date: Tue Mar 10 15:57:48 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit f8afecb1089d123f66bdce4d2ca5101b5c412dc2 Author: Alan Garny Date: Tue Mar 10 14:26:11 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 1727587d9418781b558f00d0ecda2c0961def1a2 Author: Alan Garny Date: Tue Mar 10 13:38:33 2015 +0100 Slight update to the developer documentation [ci skip]. Follows the release of Xcode 6.2. commit 2552e580b14163a12d3a0e72e5516b213ae719ef Author: Alan Garny Date: Tue Mar 10 13:35:40 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit c1c710a4b1f82b1eb16ede1117e6c908f3fa24a4 Author: Alan Garny Date: Tue Mar 10 10:22:13 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit c4a7eb072713f2649fa51ae506340fd3634b3b70 Author: Alan Garny Date: Mon Mar 9 17:25:05 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 86cec2f18a83d3ae7234996df27785a1151e0203 Author: Alan Garny Date: Mon Mar 9 13:52:25 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 9a37f3a73f7f07d871755bdd7c54ddeb80d7a018 Author: Alan Garny Date: Sun Mar 8 09:25:17 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 89e827bceaa6e5d6bbdc52f50c917bab12d69830 Author: Alan Garny Date: Sun Mar 8 09:19:06 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 974902dc9326cde524baf5448c8f0d90b6f0e546 Author: Alan Garny Date: Sat Mar 7 20:08:28 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 11f3f70da78910094bb39fad774f99bccbe78f59 Author: Alan Garny Date: Sat Mar 7 19:54:00 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit a86cdc51d369bcd316327d38016cbc3b6643c732 Author: Alan Garny Date: Sat Mar 7 14:18:50 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 1470e586b2213fa359c5fa7fc1bc182ab16b2d48 Author: Alan Garny Date: Sat Mar 7 14:08:57 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 8817cc2ef6a44af44b22a2f7db1ed84445c19dcc Author: Alan Garny Date: Fri Mar 6 18:04:00 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). Not sure why those two files didn’t get committed in the previous commit…?! commit a0439340987d029e50114558fad07d4366e940c7 Author: Alan Garny Date: Fri Mar 6 18:02:53 2015 +0100 LLVM: some work on upgrading to version 3.6 (#558). commit 77d77397e63f5c4e43f38c9290fe5e93277f31a1 Author: Alan Garny Date: Fri Mar 6 15:34:48 2015 +0100 Single Cell view: fixed an issue with the rate of a state variable (initialised using another variable) being categorised as a constant (closes #566). commit 9acaf177bb6268b23b5f3b4d0c5414cdb2b940fe Author: Alan Garny Date: Fri Mar 6 14:32:27 2015 +0100 Some minor cleaning up [ci skip]. commit 933831a738cd62b61868359e1c754902d2d89cd6 Author: Alan Garny Date: Fri Mar 6 14:26:37 2015 +0100 Some minor cleaning up [ci skip]. commit 4c31983ef27142c36c675c7e28827394efdcf7f9 Author: Alan Garny Date: Fri Mar 6 14:05:48 2015 +0100 Some minor cleaning up. commit 67b723910913eebf4c130806427290819baad9a9 Author: Alan Garny Date: Fri Mar 6 11:52:10 2015 +0100 CellML Text view: allow a variable to be initialised using the value of another variable (closes #565). commit 072cfd1187a257e9c4dda344497f2c9062693d3f Author: Alan Garny Date: Fri Mar 6 11:50:59 2015 +0100 Had forgotten a translation [ci skip]. commit 4b31d76fb1b0549ad91d8e4b6a23a030dbd3ae5b Author: Alan Garny Date: Fri Mar 6 09:18:49 2015 +0100 Documentation: problem of casing in a file name [ci skip]. commit 722f0c2a11b4d5130c12b02e61a4fba7aab4911f Author: Alan Garny Date: Thu Mar 5 18:42:43 2015 +0100 New snapshots [ci skip]. commit 3a7b1f0bccefcad78a2be1dee32f37427004152b Author: Alan Garny Date: Thu Mar 5 18:38:06 2015 +0100 CellML Text view: fixed a problem with new CellML files always being empty (closes #563). commit f6bb83f7c190a600848b7db08be69b8adadd43e3 Author: Alan Garny Date: Thu Mar 5 18:26:11 2015 +0100 Editing views: fixed a problem with creating a new file crashing OpenCOR (closes #562). commit f666ca84d18faf88958e6e8e0d9dc435029fe48c Author: Alan Garny Date: Thu Mar 5 17:57:43 2015 +0100 Fixed an issue with the new file menus only being available if there is already a file opened (closes #561). commit e72f5a12de6afa852c66336edc44cc02bdd25f69 Author: Alan Garny Date: Thu Mar 5 16:16:41 2015 +0100 New snapshots. commit 1e3dcb0f940951a854b53b3fe69caa3bcf452e18 Author: Alan Garny Date: Thu Mar 5 15:56:07 2015 +0100 Added a CellML Text view (closes #17). There are still things that could be done to make it better (e.g. see issue #532), but it can now be used to edit CellML files. commit 32b5020ac7a1da5183eb7828d4aea042b2a5b9b1 Author: Alan Garny Date: Thu Mar 5 15:47:57 2015 +0100 CellML Text view: wrote a parser for the CellML text format (closes #531). commit fb0f341ec123e6903e949e3f17cb444b0fda71a9 Author: Alan Garny Date: Thu Mar 5 15:14:56 2015 +0100 Some minor cleaning up [ci skip]. commit 02cea2a316e634d6d3a55df4add5e6419540251d Author: Alan Garny Date: Thu Mar 5 14:02:08 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 36c7fb5a7ccf4232265a38450613c60f94749362 Author: Alan Garny Date: Thu Mar 5 13:07:43 2015 +0100 Slight update to the developer documentation [ci skip]. commit 239a0bd3f97d22ac0c314221b4050615bf7f6137 Author: Alan Garny Date: Thu Mar 5 11:01:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 43c21d5c430625bc10061ddf2b6f89e7ee6278ad Author: Alan Garny Date: Thu Mar 5 10:23:35 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit cb9bc7c2ceb1796697b691ffd533f6fa684573a1 Author: Alan Garny Date: Thu Mar 5 09:49:29 2015 +0100 CellML Text view: some minor cleaning up (#17) [ci skip]. commit d03ebb95f0972791c6df02e123c4e6d50e7432b0 Author: Alan Garny Date: Thu Mar 5 09:38:44 2015 +0100 XML support: slight improvement to our serialisation of XML documents [ci skip]. We remove duplicated namespaces information. commit ac7581c96ba4ed4bdff604cc2d629dce9828d066 Author: Alan Garny Date: Wed Mar 4 17:41:48 2015 +0100 CellML Text view: some minor cleaning up (#17) [ci skip]. commit 18b5f1df75fd68e72efc91e806e91b2fda7ca7db Author: Alan Garny Date: Wed Mar 4 17:41:26 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit d7169424d066675dc58bb6b5394f18c255cfca0a Author: Alan Garny Date: Wed Mar 4 17:04:50 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 2896db21ae45d3cad6519b1e2366b018c482728f Author: Alan Garny Date: Wed Mar 4 17:00:34 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit b6a99a7d2e02a9d43c1d51f15825c2b922bf2bfd Author: Alan Garny Date: Wed Mar 4 16:52:47 2015 +0100 CellML Text view: some minor cleaning up (#17). Slight improvement to the conversion of CellML files (regarding unary “+”). commit 8fecd63f4b1cf5964993298fbb9c5b2a19593cba Author: Alan Garny Date: Wed Mar 4 16:38:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 3a43ed3ff892d012d116fd7e839f1ec38ca368a1 Author: Alan Garny Date: Wed Mar 4 16:07:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 5c2f72084640c90b1a82ebbdc2a00873b67e58cb Author: Alan Garny Date: Wed Mar 4 15:57:42 2015 +0100 Oops! [ci skip] commit 505f954f3bc97bbbe312aa3c33a1c2652e765433 Author: Alan Garny Date: Wed Mar 4 15:56:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 49f786b225e3c8375b85f655c48c190537a2694b Author: Alan Garny Date: Wed Mar 4 15:10:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 7188429dd5caee93a816f719e5dec1e0c76ab4cb Author: Alan Garny Date: Wed Mar 4 11:23:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit e7a6a9fa74b5b46b9d8501a2e93cfd83f0170500 Author: Alan Garny Date: Wed Mar 4 11:19:32 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 45499a3eb830b6ad83cc4a429af9ed4df7f96359 Author: Alan Garny Date: Wed Mar 4 11:15:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 8b11f2091226e7075267a1ac67b4c5fa05321778 Author: Alan Garny Date: Wed Mar 4 11:03:06 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some cleaning up. commit 70c098cfcc03a1881924827bf577fe013c6e6a93 Author: Alan Garny Date: Wed Mar 4 10:55:13 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some cleaning up. commit 53afaf070be47e5a0a420350dc86f668cfe941b7 Author: Alan Garny Date: Wed Mar 4 10:46:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 0ecdd96349aa422b7636bf4a45ff49815eaec8fb Author: Alan Garny Date: Wed Mar 4 10:36:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 834558e7a9c2458ef1753271b5527edfa3414981 Author: Alan Garny Date: Tue Mar 3 18:56:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 2f29ad96b499daa76e701dfd41bc64238838b6a5 Author: Alan Garny Date: Tue Mar 3 18:46:52 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit e3d1fd9cebaa5c854c963551db833bb874c1491a Author: Alan Garny Date: Tue Mar 3 17:25:45 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 161062e8e44ee04c7c08c764c1db717eb49a022f Author: Alan Garny Date: Tue Mar 3 15:56:25 2015 +0100 Some minor cleaning up [ci skip]. commit c9d39124d31522641c652855f5fcd2f793f46213 Author: Alan Garny Date: Tue Mar 3 15:49:30 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit ea293d4141e944f074637416f66382eadfa32817 Author: Alan Garny Date: Tue Mar 3 15:35:02 2015 +0100 CellML Text view: fixed a small issue with the lexer and Unicode (#17) [ci skip]. commit e14852bfbfdc9a29b006a83343d353823faeb45e Author: Alan Garny Date: Tue Mar 3 15:04:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 6cb7720d73225c435778730a99f293267ca8370b Author: Alan Garny Date: Tue Mar 3 14:47:28 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 625d7dcc94384b2216508beb50cf67b27919dd6d Author: Alan Garny Date: Tue Mar 3 14:33:34 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit ccabc3f56ce0d9444b5b7f43b59bce658798fd49 Author: Alan Garny Date: Tue Mar 3 14:13:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 72ce21a449bf05fe075e11ecce5af8e4828c1e51 Author: Alan Garny Date: Tue Mar 3 13:55:25 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit c27689865757ecdef24516730b69aa27246b95d4 Author: Alan Garny Date: Tue Mar 3 13:48:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 096fcad9c79e4ea4a017d99bf539e5ac8b74d333 Author: Alan Garny Date: Tue Mar 3 11:20:07 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 1c64f798f221bd026a832c6ac228ea2839eaab22 Author: Alan Garny Date: Tue Mar 3 11:19:47 2015 +0100 Some minor cleaning up [ci skip]. commit 9f829f7edfa3090262cd929866d688f5c7012ac8 Author: Alan Garny Date: Tue Mar 3 10:46:34 2015 +0100 Some minor cleaning up [ci skip]. commit 28023f08da0001af9733193eca6faf639ddbf12a Author: Alan Garny Date: Tue Mar 3 10:43:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 604348a84ee39782581af36fb194190e14bbd6a2 Author: Alan Garny Date: Tue Mar 3 10:16:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 56f7d816bf0386568ce187ad15fc1c7d7464851d Author: Alan Garny Date: Mon Mar 2 18:10:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit d9b873f7778607f7e4e8fce1776ad473469b679f Author: Alan Garny Date: Mon Mar 2 17:33:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit ff624e2cbf38b57971e811a5a127ee3724bf25ac Author: Alan Garny Date: Mon Mar 2 17:28:59 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 1d82da1c94c0347a0c364379a9ad7881a3748b31 Author: Alan Garny Date: Sun Mar 1 13:41:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit d1a572a140716eab45e0199bd95184f3152e9bf3 Author: Alan Garny Date: Sun Mar 1 10:33:38 2015 +0100 Slight update to the developer documentation [ci skip]. commit 4abed792617672a2bc36d82504f602f8dc6ce047 Author: Alan Garny Date: Fri Feb 27 21:02:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 9f7f96b32bc4fc5062c87f6a625c9532021fa5f3 Author: Alan Garny Date: Fri Feb 27 17:19:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit eb3cf2640d97086b6ea33533872c1ed1b96bc94c Author: Alan Garny Date: Fri Feb 27 16:55:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 55521488c9e6e9054dbecc7d0e773dbeb1680656 Author: Alan Garny Date: Fri Feb 27 16:04:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 7da2c8e2257ae3e716fdcfccec933b4176757b28 Author: Alan Garny Date: Fri Feb 27 15:50:35 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 230719ea258113707994fa2a4fb7e90e85f74729 Author: Alan Garny Date: Fri Feb 27 15:35:04 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit ae45b6a394e385ee70bd11a27b9f41fb7647f435 Author: Alan Garny Date: Fri Feb 27 14:43:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 7f83547e04ea34d27ef8146af2659792f963b54c Author: Alan Garny Date: Fri Feb 27 14:40:51 2015 +0100 Some minor cleaning up [ci skip]. commit de4a1ca3f9b9adeaa055e979856964650122d257 Author: Alan Garny Date: Fri Feb 27 13:01:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit c377ca9d0c219d45ff13e254e4f7bd9f8cfaa59d Author: Alan Garny Date: Fri Feb 27 11:34:46 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 83ae17ad8ac00cef06d6c865e3af7919c70343c0 Author: Alan Garny Date: Fri Feb 27 10:35:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit beb65f7577ac509c335ba670c816ed268beb86e6 Author: Alan Garny Date: Fri Feb 27 10:08:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 8e693b539fec662161ff6e6f907178098454372a Author: Alan Garny Date: Fri Feb 27 09:50:31 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 71d5b300daf753d577b730afed1e0b03980134b1 Author: Alan Garny Date: Fri Feb 27 09:49:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 34f827a0de83c713f3deb6a3e4e4ac0b9b071766 Author: Alan Garny Date: Fri Feb 27 09:32:09 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 7bea1f8f7c6f0c4b633673c125fe43448d3520c2 Author: Alan Garny Date: Fri Feb 27 09:20:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit 459e5c9f242c3ee3e63df7667b5de2f4720cb448 Author: Alan Garny Date: Thu Feb 26 17:37:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 46e5bf2857c99bc855e0ec7e604484346690eeaa Author: Alan Garny Date: Thu Feb 26 17:14:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). Some minor fixes here and there. commit 8c6228626ca6b3e8ab4fc2a42ecff5926ab807ff Author: Alan Garny Date: Thu Feb 26 16:36:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). Done with mappings. commit b21b40b525addd17b3a463277313284cc7f67ae3 Author: Alan Garny Date: Thu Feb 26 15:48:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. Some minor cleaning up. commit e281bee78776d349c5632772ad84b39712c4f0dc Author: Alan Garny Date: Thu Feb 26 15:28:32 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). Done with imports. commit accad4b1a3e3e10f4719cd7890b622c4d04c6805 Author: Alan Garny Date: Thu Feb 26 15:00:27 2015 +0100 CellML Text view: some minor cleaning up (#17). commit 47bd559f796681545e2c9af10a6821793d71f8a1 Author: Alan Garny Date: Thu Feb 26 14:10:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 46f7126956628d9948f7fb4a1096b959045950fa Author: Alan Garny Date: Thu Feb 26 14:06:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 39e3d86463d33f7a4ef0b7faeb7ec0984f381507 Author: Alan Garny Date: Thu Feb 26 14:01:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 33160e9dc70342c59dc31c47004f51e1b48038c4 Author: Alan Garny Date: Thu Feb 26 14:00:28 2015 +0100 Some minor cleaning up [ci skip]. commit e4b344d1dd285cbcadf1084eef33006da5ac3946 Author: Alan Garny Date: Thu Feb 26 11:51:09 2015 +0100 Some minor cleaning up [ci skip]. commit 5b6e7f46b1a947aa42c6a876f38dffaa7f75cc6b Author: Alan Garny Date: Thu Feb 26 11:18:19 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 27875d4f33981f106cf6fc53419c54963a75d924 Author: Alan Garny Date: Wed Feb 25 19:18:01 2015 +0100 Some minor cleaning up [ci skip]. commit e004a18f2ae3017f008950e048c9fce128ac7f0c Author: Alan Garny Date: Wed Feb 25 19:12:21 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 7bbe6ddc36244c9c12c0c613278cd2e700590f63 Author: Alan Garny Date: Wed Feb 25 18:48:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit b8e976d0e840815e38d0fb856b149552ae476bbf Author: Alan Garny Date: Wed Feb 25 18:43:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 4eb224d6f370c446c93f29d44760bc8d33f508c8 Author: Alan Garny Date: Wed Feb 25 18:36:25 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit a9dfa24ace4c866e459fa88025f58bfb6d26fbc5 Author: Alan Garny Date: Wed Feb 25 18:20:53 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 81242b3121741dc6b048e0f6d20122451ae31107 Author: Alan Garny Date: Wed Feb 25 16:15:16 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 62ff2216eea5e5f5852cdfbd602ee70c5ad12ec6 Author: Alan Garny Date: Wed Feb 25 16:12:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit baa7c8b0ccdcdc72df55e0bd1bdad7586984a8e5 Author: Alan Garny Date: Wed Feb 25 14:00:13 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit cba8d0b39a91798fc3485b374aea9f6c0d507670 Author: Alan Garny Date: Wed Feb 25 13:32:15 2015 +0100 CellML support: added a static method to retrieve a CellML version as a string [ci skip]. commit ae3ffda0e550cba5d975d70c55cc477aef727133 Author: Alan Garny Date: Wed Feb 25 13:31:41 2015 +0100 Edit list widget: added support for messages of type information [ci skip]. commit 65c04ada28401acaee6cf4c9b5aa66a98a84f7c5 Author: Alan Garny Date: Wed Feb 25 11:13:12 2015 +0100 Fixed a small issue with opening a non-CellML file while in a CellML-based view [ci skip]. commit 9f27153ba6a8679fb48c702778d8670b00eb216c Author: Alan Garny Date: Wed Feb 25 10:59:05 2015 +0100 Some minor cleaning up [ci skip]. commit 83c5d89f4d5ca3b7766278112eee89f45bd49af5 Author: Alan Garny Date: Wed Feb 25 10:43:30 2015 +0100 CellML Text view: some work (#17) [ci skip]. commit c67c1c2abcd6f257a0bbd2fcb0c14a9f1826c761 Author: Alan Garny Date: Wed Feb 25 10:39:25 2015 +0100 CellML support: slight improvement to the code. Added CellMLSupport::CellmlFile::version(). commit 1831ea0264de35659e7eb4687ed3bfea1924c217 Author: Alan Garny Date: Wed Feb 25 10:17:01 2015 +0100 Some minor cleaning up [ci skip]. commit 57c5fb698b6f572e8ff1a87236682438aef32acc Author: Alan Garny Date: Wed Feb 25 09:19:37 2015 +0100 Qt 5.4: OpenSSL: addressed issue of some methods not being resolved (closes #516). commit 6925663e51fc21dbe5884b7245b2735047266446 Merge: f3cf50cd8 bffb35501 Author: Alan Garny Date: Wed Feb 25 09:17:19 2015 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit f3cf50cd80c6786195e797a66356fcfeaacde4af Author: Alan Garny Date: Wed Feb 25 09:14:17 2015 +0100 Qt: upgraded to version 5.4.1 (closes #556). commit bffb355010d0a0767575d7118c266272bdf1c0f1 Author: Alan Garny Date: Tue Feb 24 20:33:09 2015 +0100 Some minor cleaning up [ci skip]. commit a52d3e311e5bc4a5ad679cc944b9af9c02a15be9 Author: Alan Garny Date: Tue Feb 24 16:35:34 2015 +0100 Tests: make sure that tests.txt gets created even if there are no tests [ci skip]. commit b9a8b59fe8f5c40d16e3c42188e9f7eeeff07655 Author: Alan Garny Date: Tue Feb 24 15:08:55 2015 +0100 CellML Text view: properly handle new files (#17) [ci skip]. commit 1caf5e1007aa4352fb054ddf5c14452d2c638eff Author: Alan Garny Date: Tue Feb 24 15:07:09 2015 +0100 Slight update to the developer documentation [ci skip]. commit 00d3366a77d5ac46649fdeb30a4cd45c0f50accd Author: Alan Garny Date: Tue Feb 24 13:49:32 2015 +0100 CellML Text view: properly handle new files (#17) [ci skip]. commit 6d286df2aca7dac59b911e309cc76479242b82f9 Author: Alan Garny Date: Mon Feb 23 20:09:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 167a04e6491a2f4bed9e1798affa1c100922cc02 Author: Alan Garny Date: Mon Feb 23 19:42:24 2015 +0100 Continuous integration: remove support for AppVeyor (closes #555) [ci skip]. commit c876cf4a3f71f989d07b9c68a79a51a75b83a9e3 Author: Alan Garny Date: Mon Feb 23 19:33:06 2015 +0100 Continuous integration: remove support for AppVeyor (closes #555). commit 1e2144717f6c306eeaec3515a6e3a1fd95bf4896 Author: Alan Garny Date: Mon Feb 23 18:16:43 2015 +0100 Some minor cleaning up. commit 74dd2ce60d80210f3c74d26c37541c489af84c8b Author: Alan Garny Date: Mon Feb 23 17:35:09 2015 +0100 Some minor cleaning up [ci skip]. commit 616a1a9477b99be81ae96a1ed552c61c2b35979c Author: Alan Garny Date: Mon Feb 23 17:16:48 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 729334aa3bda9db96f1151c26115304ab1c41aea Author: Alan Garny Date: Fri Feb 20 21:32:28 2015 +0100 Some minor cleaning up [ci skip]. commit c1979ae666b525275fd58cf54d9c477e7603a145 Author: Alan Garny Date: Fri Feb 20 18:00:37 2015 +0100 CellML: now process namespaces whenever needed/possible. commit b8eb83b64588c1c2b24a8747f9bb26cd4e0452b9 Author: Alan Garny Date: Fri Feb 20 17:55:44 2015 +0100 Some minor cleaning up [ci skip]. commit 52f7dc8e5080abcc9fd5a3395c78d4e643d2f590 Author: Alan Garny Date: Fri Feb 20 10:28:41 2015 +0100 Some minor cleaning up [ci skip]. commit da6ab93749fca6a71a31864402a639e0918a4b7a Author: Alan Garny Date: Fri Feb 20 08:58:54 2015 +0100 Some minor cleaning up [ci skip]. commit c71afb9f2ed6284e3a09bc2e2cafb796f7324345 Author: Alan Garny Date: Thu Feb 19 21:05:44 2015 +0100 Some minor cleaning up. commit 10e12c1887031370772ae9954ad400a234928deb Author: Alan Garny Date: Thu Feb 19 20:56:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit ed1b73c9dcd979268b63581db4bbd83bd255bbb6 Author: Alan Garny Date: Thu Feb 19 19:05:17 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit eec239be94f1d450d638d6619e574a596fd88505 Author: Alan Garny Date: Thu Feb 19 18:30:54 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit b767099f02acda3300a166cc8a197309b351a988 Author: Alan Garny Date: Thu Feb 19 18:15:43 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit d8d666e456d1ad52dbc255080d2abc8d18866174 Author: Alan Garny Date: Thu Feb 19 16:54:36 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 36e4636df0f90080bdeb3af4799b4d0a10c6557c Author: Alan Garny Date: Thu Feb 19 16:46:55 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 6835274b7252a7bcb509b48051072a342fff15c2 Author: Alan Garny Date: Thu Feb 19 16:27:00 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit f5d052cc3fde890d006e5ef1ea2e7ed9327384a2 Author: Alan Garny Date: Thu Feb 19 15:46:41 2015 +0100 Some minor cleaning up [ci skip]. commit ab10cdf8f59c8a3fcd2e1bea11f67c305909d141 Author: Alan Garny Date: Thu Feb 19 15:45:04 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit e14dad1cd9e5945c0fad172d25ec74ecce1d8ee4 Author: Alan Garny Date: Thu Feb 19 15:05:26 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 86e1da47d174fffaa5f029977077a32f026def67 Author: Alan Garny Date: Thu Feb 19 14:45:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 5abd0f52a1d7baa3b4c83adcd755d755fa52e6e2 Author: Alan Garny Date: Thu Feb 19 14:42:43 2015 +0100 Some minor cleaning up [ci skip]. commit 86fc064812a27fe003b9cded2131b6095a6532a5 Author: Alan Garny Date: Thu Feb 19 14:09:47 2015 +0100 Some minor cleaning up [ci skip]. commit a14d4ac51a01b658b667003441f0ebff632f0493 Author: Alan Garny Date: Thu Feb 19 10:57:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit dd14fea615ef69e179768b0693a2f9c5a9327b0c Author: Alan Garny Date: Thu Feb 19 10:14:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 7ac67bc52303e97b9b5fd79f55ea2061c16e6e1e Author: Alan Garny Date: Wed Feb 18 20:33:01 2015 +0100 CellML Text view: added support for unicode characters (closes #554). commit 2e013e27f081d9c2a9d9f0047be307175a190c23 Author: Alan Garny Date: Wed Feb 18 20:12:10 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit 4e164d5e4d9d335321b679a9baea1492dcbf7ce3 Author: Alan Garny Date: Wed Feb 18 19:58:43 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit 278280185297572817463a894abea382fb8ecb1c Author: Alan Garny Date: Wed Feb 18 19:50:22 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit 82931e02f3198f24cb19b3a1681c2efc6edd5e64 Author: Alan Garny Date: Wed Feb 18 19:24:31 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit 394c3cd3b23bea9dc5ed7125ea6b845d01385d6f Author: Alan Garny Date: Wed Feb 18 19:17:35 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. Some minor cleaning up. commit 84a040d73e285cf5214a0562a1ba170251ae48a2 Author: Alan Garny Date: Wed Feb 18 19:05:58 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. Some minor cleaning up. commit e0c44187d4bf8abeab71abb403dd5e6b5a5f8a28 Author: Alan Garny Date: Wed Feb 18 18:40:25 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit eac408b9f5a402def85264db31ca69716cd57aaa Author: Alan Garny Date: Wed Feb 18 18:27:00 2015 +0100 CellML Text view: some work on adding support for unicode characters (#554) [ci skip]. commit f911110dfcf7ef8e07357f7a0a7bfcd4b3786bb1 Author: Alan Garny Date: Wed Feb 18 18:25:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit cfd6ab7772d3e0da047e41b586bf750e38c368b6 Author: Alan Garny Date: Wed Feb 18 17:37:56 2015 +0100 Some minor cleaning up [ci skip]. commit c3333ca5960cd8d5c668468245bf224322eb4d13 Author: Alan Garny Date: Wed Feb 18 14:38:14 2015 +0100 CellML Text view: improved the syntax highlighting of numbers (#17) [ci skip]. commit 0e61eddf5c6495dd11067980ea2bf74de5943ea5 Author: Alan Garny Date: Wed Feb 18 14:29:54 2015 +0100 CellML Text view: improved the syntax highlighting of numbers (#17) [ci skip]. commit 996d3f1a830c7d1d1e43fa4174601ac140b70ae5 Author: Alan Garny Date: Wed Feb 18 13:15:26 2015 +0100 Property editor widget: slight improvement to the validation of floating point numbers [ci skip]. commit 5ab08dc5f18cee9aca74600e7826a4bde46a8619 Author: Alan Garny Date: Wed Feb 18 13:14:52 2015 +0100 CellML Text view: improved the highlighting of numbers (#17) [ci skip]. commit cb94ad9fcf8be48fce0a00f8d49fc6ccca03f19a Author: Alan Garny Date: Tue Feb 17 18:04:55 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit a1a7d8a71d6f5fcd4837670bde051964be4685cd Author: Alan Garny Date: Tue Feb 17 15:41:39 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit ff7cdabbe74f5e4a37836ee37437173bc54e1fd5 Author: Alan Garny Date: Tue Feb 17 14:55:54 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 81d7aaa1657ad4e6b628857181c6c782d0f524ba Author: Alan Garny Date: Tue Feb 17 14:18:02 2015 +0100 Some minor cleaning up [ci skip]. commit 374e17e0d4b75d2473f180d822ed6f0be0e00cb6 Author: Alan Garny Date: Tue Feb 17 13:55:12 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 050ffc79db322146596d74f9e0056b067b1f1321 Author: Alan Garny Date: Tue Feb 17 13:37:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 86fb86ae9ee71343a69791f901041b278e686554 Author: Alan Garny Date: Tue Feb 17 11:22:20 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit ecbee08dd30b1a9a625c3accc57aa59cd7e77312 Author: Alan Garny Date: Tue Feb 17 10:58:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit a1c006351c1d43162208c2a87a29512e41534e3e Author: Alan Garny Date: Tue Feb 17 09:33:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit 841abb2af6541bb89c30a25d722520a93cfaba5d Author: Alan Garny Date: Mon Feb 16 18:46:01 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531). commit bec5a51beeec0ca10145798f11e52a6661187f1d Author: Alan Garny Date: Mon Feb 16 18:37:08 2015 +0100 Some minor cleaning up [ci skip]. commit 0b5e5a99baa70365883d56b7cd4b2c5a377b1d42 Author: Alan Garny Date: Mon Feb 16 17:22:51 2015 +0100 Testing strategy: don'\''t hard code the list of tests in our main test program (closes #553). commit 65b0fb9a33a1d97385b95743b30d638405b4612f Author: Alan Garny Date: Mon Feb 16 16:42:27 2015 +0100 Testing strategy: don'\''t hard code the list of tests in our main test program (closes #553). commit badcac3104f8d2838798a4ab490d3e34c164fc73 Author: Alan Garny Date: Mon Feb 16 15:19:45 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit bd6ecf5b2203f15ed5e1892a8ee981747557228a Author: Alan Garny Date: Mon Feb 16 15:17:00 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 22acaf2faae348c7aa04353b5924044601c102cc Author: Alan Garny Date: Mon Feb 16 14:52:48 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit 4f904ade6a036cc0ff7e286577e75157b605f39e Author: Alan Garny Date: Mon Feb 16 14:52:07 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 5a16433f9af63bbfb3161f10a0856ac401a7bffe Author: Alan Garny Date: Mon Feb 16 14:10:44 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 4d2251ae01c85d8fc12179f93207638afc74bf77 Author: Alan Garny Date: Mon Feb 16 11:48:14 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit b84d9195656deef7a9ea51d8f0fe03a55b1c7078 Author: Alan Garny Date: Mon Feb 16 11:30:14 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit c2147acdb475ba43362a228845e6b0b3a9cf1e31 Author: Alan Garny Date: Mon Feb 16 11:21:30 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 861bd5707c83ab216e86e401944f2f91dcce026f Author: Alan Garny Date: Sun Feb 15 18:03:59 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 80367c1967d51ac93a19f112936a8bfdf9759d70 Author: Alan Garny Date: Sun Feb 15 17:41:20 2015 +0100 Some minor cleaning up [ci skip]. commit 7e8a4abace26d53331da896e27a31f16a5cb8be4 Author: Alan Garny Date: Sun Feb 15 13:06:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 0ad829b41673b61119cc1a89d5300b07bacb88b0 Author: Alan Garny Date: Sat Feb 14 14:18:38 2015 +0100 Some minor cleaning up [ci skip]. commit b8d26704b940987cda40aa8e7e91ad253f271391 Author: Alan Garny Date: Fri Feb 13 18:07:19 2015 +0100 Fixed a small issue that preventing a file from being reloaded after a view couldn'\''t save it [ci skip]. commit 7b909a3ba9b06ed16847cef03d98a9049a45af7a Author: Alan Garny Date: Fri Feb 13 17:56:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 4a60a6a62d39a61afcbf22ec9b9dcb05fdd2ba84 Author: Alan Garny Date: Fri Feb 13 17:44:29 2015 +0100 CellML Text view: some minor refactoring [ci skip]. commit cd0c91b40853f3a7d28fa43000426710d1ec3fa1 Author: Alan Garny Date: Fri Feb 13 17:04:33 2015 +0100 Pretty CellML view: replaced "Pretty CellML" with "CellML text" (closes #548) [ci skip]. Had forgotten to rename those two files! commit d7daa0779df5ff4f30435107e48d4e0f2917398d Author: Alan Garny Date: Fri Feb 13 14:59:47 2015 +0100 Slight update to the developer documentation [ci skip]. commit a07b3879d1bbc260bb8af57d0886944669fedfa0 Author: Alan Garny Date: Fri Feb 13 14:29:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 1f9e4f310306830583cae15eae71681f1ec68b16 Author: Alan Garny Date: Fri Feb 13 14:15:06 2015 +0100 Some minor cleaning up [ci skip]. commit 444f60d454a5e16f12af4eea95d649a2addc0104 Author: Alan Garny Date: Fri Feb 13 14:02:17 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit f8521d606d479c19d03500022dd14753161c4b23 Author: Alan Garny Date: Fri Feb 13 10:34:17 2015 +0100 Some minor cleaning up [ci skip]. commit 590e0dc4853e3115af4ac5a45332a673ba24bc2c Author: Alan Garny Date: Thu Feb 12 18:07:13 2015 +0100 Can now quickly reopen the most recently closed file (closes #552). commit 0519810d7e0579fe38c2c1ed4109ae9ef445feba Author: Alan Garny Date: Thu Feb 12 17:04:58 2015 +0100 MathML: slight update to the XSL [ci skip]. The not element was rendered using a special character that would probably not make sense to most people, so now render it as “not” (as in COR). commit 7622494f3719c3853c3223dfc8727247a9d2f4e5 Author: Alan Garny Date: Thu Feb 12 16:54:04 2015 +0100 Some more reverting [ci skip]. I don’t know why, but I kind of assumed that we didn’t need to clean a MathML block. Well, wrong! Our MathML viewer indirectly crashes if a MathML block isn’t cleaned (e.g. when we have a cn element with a cellml:units attribute. If the attribute is left in, then we get a crash! commit c476eaf00a78cb25e6127fb12e37767736608e69 Author: Alan Garny Date: Thu Feb 12 16:38:26 2015 +0100 Reverted some changes related to the loading of a CellML file using namespace processing. Indeed, it would seem that if a model element has a cmeta:id and that it listed before the xmlns:cmeta attribute, then the cmeta:id won’t be recognised when trying to retrieve it using pDomNode.attributes().namedItemNS(CellMLSupport::CmetaIdNamespace, "id”). If we were to put the xmlns:cmeta attribute before the cmeta:id, then it’s all fine. However, my understanding is that the order of attributes doesn’t matter, yet it seems that it does in this particular case when using QDomDocument & Co. commit 72e1ffd8d311ed4091d4ef283808f3f7babc00de Author: Alan Garny Date: Thu Feb 12 10:43:49 2015 +0100 AppVeyor: only get email notifications when actually necessary. commit d85f2796eca28c4b343964439147b17d6a1decab Author: Alan Garny Date: Thu Feb 12 10:21:25 2015 +0100 Cleaned up some XML-related code [ci skip]. commit bd42b7ecebcdab4d2c95d841c3cf855148d1fae0 Author: Alan Garny Date: Thu Feb 12 09:45:40 2015 +0100 OpenSSL on Windows: now ship the version from http://indy.fulgan.com/SSL/ (closes #551). commit 25e160a16d3bdebddd450ebe4fd61e325c09d512 Author: Alan Garny Date: Wed Feb 11 20:09:57 2015 +0100 Cleaned up some XML-related code [ci skip]. commit c146e7318ae27b3be9e4367d654d764a5d20de4a Author: Alan Garny Date: Wed Feb 11 18:52:17 2015 +0100 Some minor cleaning up [ci skip]. commit 449aab3c899e74f00edbf83ef243da678eb2f127 Author: Alan Garny Date: Wed Feb 11 16:09:31 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit 35a1f2f078eaf9779096c4945e6837c6e96353e7 Author: Alan Garny Date: Wed Feb 11 14:27:18 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit dc87a76984336b6910c9c5ab00da902ff37ca55e Author: Alan Garny Date: Wed Feb 11 14:24:08 2015 +0100 Some minor cleaning up [ci skip]. commit ee63c7bcdd555341f063a7c855bf6a37ee554a58 Author: Alan Garny Date: Wed Feb 11 13:19:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit e51c279654166b056fb3f3e8d3bdbc843fc528d1 Author: Alan Garny Date: Wed Feb 11 11:13:49 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format (#531) [ci skip]. commit eb57c88bc9b30a6320e001059137445c49bb52b4 Author: Alan Garny Date: Wed Feb 11 11:12:58 2015 +0100 Some minor cleaning up [ci skip]. commit 6b77528a0c620ea2e763ad4482d68fca1d4c8adb Author: Alan Garny Date: Wed Feb 11 09:27:11 2015 +0100 AppVeyor: use the default platform and configuration. Indeed, to build/test so long on AppVeyor (slow queuing system and all the jobs are run sequentially rather than in parallel as in Travis CI) that it makes the whole CI a bit pointless. commit f15fed81d5239dd90c8dfa3b90b8633bee904a85 Author: Alan Garny Date: Wed Feb 11 09:23:50 2015 +0100 Slight update to the user documentation [ci skip]. commit f17257aaf05dd0062e1a72431d96fa654dc42ef7 Author: Alan Garny Date: Tue Feb 10 17:51:02 2015 +0100 Pretty CellML view: replaced "Pretty CellML" with "CellML text" (closes #548). commit 60d82b5ee14f0de3795d85c425acd61a4d227972 Author: Alan Garny Date: Tue Feb 10 17:30:38 2015 +0100 Pretty CellML view: some work on replacing its name with "CellML text" (#548) [ci skip]. commit f6f5b69f45a575170a5b1f3816fde8659d75a1a1 Author: Alan Garny Date: Tue Feb 10 13:16:08 2015 +0100 Some minor cleaning up [ci skip]. Argh, accidentally removed the x bit in the previous commit. commit 9fa38ff86b8f758b7494fdac38c11debd21c0ee9 Author: Alan Garny Date: Tue Feb 10 13:09:29 2015 +0100 Some minor cleaning up [ci skip]. commit 0d2c545934831047a33461a3e4ab859275827af7 Author: Alan Garny Date: Tue Feb 10 00:27:31 2015 +0100 Continuous integration: added support for AppVeyor (i.e. CI on Windows) (closes #549). commit 68733159eff48168fca9c5b265630a2f0e76d588 Author: Alan Garny Date: Mon Feb 9 23:44:53 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 0b502d4d13bb3ceb4e287176c1975d4b52c95f11 Author: Alan Garny Date: Mon Feb 9 23:43:19 2015 +0100 Windows: allow for runtests to work whether it'\''s run using "runtests.exe" or "runtests" [ci skip]. commit 968ad52443bc348ad26c13a83728cb249a2254b5 Author: Alan Garny Date: Mon Feb 9 22:57:34 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit ed742acf761759bd8441d4af7959cfb42e39c2de Author: Alan Garny Date: Mon Feb 9 20:14:21 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 5c0ea4b81593ca7cb5b6b9893953a0ae28b6c0a1 Author: Alan Garny Date: Mon Feb 9 19:56:43 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 23c1116a5b4511a08ad4e34aec4ada1e1f5354ef Author: Alan Garny Date: Mon Feb 9 19:37:16 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 8365446a054b2de1059e231a418ff9a9cf590aa3 Author: Alan Garny Date: Mon Feb 9 17:29:37 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 40a7918ee386639afeba23a1c2d2ca17a31f9da3 Author: Alan Garny Date: Mon Feb 9 17:14:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit e1787266de49bf8dc14f2a29fe160af8c91391bc Author: Alan Garny Date: Mon Feb 9 16:27:04 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 452fa1bc72178b4fcd8d1bd70a3566403f87c5b9 Author: Alan Garny Date: Mon Feb 9 15:44:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 4f1e3f3282a04e56e02632a7a5339570ff7ff117 Author: Alan Garny Date: Mon Feb 9 15:28:54 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 10b30372a766b0394e91206a44197c21781235f1 Author: Alan Garny Date: Mon Feb 9 14:11:35 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit b03a416443834e043368f5d6ed019326411435b3 Author: Alan Garny Date: Mon Feb 9 14:04:07 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 987b57f76cacdd6b971c70e67872761aa4d43d77 Author: Alan Garny Date: Mon Feb 9 13:50:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 3812a2aae19194344b4c31b5a52c5dd31f20086d Author: Alan Garny Date: Mon Feb 9 13:24:40 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 8100e51b30c00675b34caaa5efb7aad95fff1afb Author: Alan Garny Date: Mon Feb 9 13:13:56 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 6d34cc194d32dd8fba4368cf3b5f12343ef790e3 Author: Alan Garny Date: Mon Feb 9 11:50:23 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit fe1d59302b8d81cae5f327763d0498e9cf72bf58 Author: Alan Garny Date: Mon Feb 9 11:42:18 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 9fd11cd3d8733400873f24c82c957a93fa2efefa Author: Alan Garny Date: Mon Feb 9 11:28:06 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 0767c09852f39e09cea38d39da5937e2c70b643e Author: Alan Garny Date: Mon Feb 9 11:21:00 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 124391916a529f32ace95b131fb6940701507673 Author: Alan Garny Date: Mon Feb 9 11:11:11 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 341332b9fa888847a43364e0e84104c2fd270c53 Author: Alan Garny Date: Mon Feb 9 11:07:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 3f5fef3f02b14ce73e196ba09854703b50aedafe Author: Alan Garny Date: Mon Feb 9 10:59:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit e2bd78acd0f27477d5d22affadb4373ad75e6f31 Author: Alan Garny Date: Mon Feb 9 10:48:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 439fbdc4673b0eea234eff28d25657e3d61eb38e Author: Alan Garny Date: Mon Feb 9 10:39:09 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 416a7eaacda2b9b90e111e8b870b424f74f2b067 Author: Alan Garny Date: Mon Feb 9 10:30:01 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 561c9fb9bf1a3a96aa47f343c0272dd0104b58d3 Author: Alan Garny Date: Mon Feb 9 10:27:58 2015 +0100 AppVeyor: trying a simple dir command. commit 75cd6938ad7a681cad8cecf3daedc678aaf4b378 Author: Alan Garny Date: Mon Feb 9 10:21:11 2015 +0100 AppVeyor: initial YAML file [ci skip]. commit 098e061325af36cf57566f1e60c87328aab65a6a Author: Alan Garny Date: Sat Feb 7 14:08:39 2015 +0100 New snapshots. commit a8445b3b5aa3452c1a37110b67b5051d0d9f2d1b Author: Alan Garny Date: Sat Feb 7 14:03:39 2015 +0100 New snapshots. commit a7550395dd3831c0368d22fc655697a63f81ef37 Author: Alan Garny Date: Sat Feb 7 13:23:18 2015 +0100 Some minor cleaning up [ci skip]. commit 51bc945d02f496c46e42924554369061dd4d23a3 Author: Alan Garny Date: Sat Feb 7 11:55:22 2015 +0100 New snapshots. commit bc2ee4b633f9221578582936dc2d142bff01d678 Author: Alan Garny Date: Sat Feb 7 11:50:39 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit 5f16bc1f79aa6e20ca29ef07b5cc20c334e82d49 Author: Alan Garny Date: Sat Feb 7 11:28:23 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (closes #494). commit 74a8a220296996c3517356c4d90d2ff23227e0ea Author: Alan Garny Date: Fri Feb 6 19:42:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (closes #494). commit 1310eff47d2a8b415149a76be054ca8c483a7322 Author: Alan Garny Date: Fri Feb 6 16:39:00 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 972fdeddd71ee54f82d7e375d2358fecace1925b Author: Alan Garny Date: Fri Feb 6 16:08:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 41aa767c3525f091de7874017237dd72427d40a3 Author: Alan Garny Date: Fri Feb 6 16:01:12 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 06aad2f52ba084fab2e221409f818dffadb2071d Author: Alan Garny Date: Fri Feb 6 15:45:39 2015 +0100 Documentation: put a link to our published article in both the user and developer documentations (closes #547). commit 91efd083ec7a43439ec5f900838bfe01ee0cdf53 Author: Alan Garny Date: Fri Feb 6 15:34:26 2015 +0100 Some minor cleaning up [ci skip]. commit fc725bc772f8f4b34648bb6d56f50e2bd51eafb8 Author: Alan Garny Date: Fri Feb 6 15:15:00 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). The ‘minus’ and ‘divide’ are not n-ary operators. commit d22b5590fed9e70268d2fd292003bdd14833afee Author: Alan Garny Date: Fri Feb 6 15:03:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit b9487efde7dab828b59a8e5249aaa215d1880e44 Author: Alan Garny Date: Fri Feb 6 11:54:30 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit ad868b1d7f247a27ca1665d02067d4da74b10e06 Author: Alan Garny Date: Fri Feb 6 11:52:07 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit e0f68b9d0188e2aeba72e075951c94e076e849db Author: Alan Garny Date: Fri Feb 6 11:41:06 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit e60ce6ce934d31fb5dc1de2c823146d1cc31fa8a Author: Alan Garny Date: Fri Feb 6 11:29:11 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 6a3e35eba2dd4f3db423993fe24ca4d2daaa3a3c Author: Alan Garny Date: Fri Feb 6 11:28:12 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 9eb8093c26e2f4ffecee3901381fb0fd76d03e4b Author: Alan Garny Date: Fri Feb 6 11:20:24 2015 +0100 CellML support: prevent a file from importing itself (closes #546). commit a2612dd16f6ae50a8d6a7d30948c8e95864a2910 Author: Alan Garny Date: Fri Feb 6 11:18:23 2015 +0100 Some minor cleaning up [ci skip]. commit b42d75c79da1c3f271e6d45e9bdc4858318cd7c6 Author: Alan Garny Date: Thu Feb 5 19:19:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 77da91e1ecb3f3d19f7257aa640ede2e449d00f5 Author: Alan Garny Date: Thu Feb 5 19:15:37 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 4f588cac126e1072aa68d9f51c99e0411172836b Author: Alan Garny Date: Thu Feb 5 18:42:29 2015 +0100 Some minor cleaning up [ci skip]. commit b3ff978c8782477de44dfbf4efcc332ed26ef4ca Author: Alan Garny Date: Thu Feb 5 13:32:54 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit b2a7466150477cf15a2a081c15e8dc73a0d0baa4 Author: Alan Garny Date: Thu Feb 5 13:08:20 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit a6ad325b0289898f53b35826269c9d45906de474 Author: Alan Garny Date: Thu Feb 5 13:07:39 2015 +0100 Some cleaning up [ci skip]. commit 5b4aaa38a18a10ed1b40f7b071e13d374d7b8ec5 Author: Alan Garny Date: Wed Feb 4 19:16:19 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit cf00aff22caeca9dbc4d27b23024804a1309d31a Author: Alan Garny Date: Wed Feb 4 17:20:53 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit bc99d4e7401c0c8a110463c3c277145668805adf Author: Alan Garny Date: Wed Feb 4 15:38:51 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit f32f8eef4517b28f602ca4be8325c55fea07bb7e Author: Alan Garny Date: Wed Feb 4 13:46:37 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 835acd382bc1bc8d9d7c6d225a401851d4d2a0ee Author: Alan Garny Date: Wed Feb 4 11:15:50 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit a3c19d51f0b65c1fc14058412d63aabbc360aa4e Author: Alan Garny Date: Wed Feb 4 11:10:35 2015 +0100 Tests: improved the testing of string lists. commit 76de7b74aa63f7f81ed138d02d24eade7d49819e Author: Alan Garny Date: Wed Feb 4 10:03:56 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit be79963b3dbf8ba6afd8021fdef93f54f444fa95 Author: Alan Garny Date: Tue Feb 3 19:06:46 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit a8847537561cffe0a27b255fce9d08365b245279 Author: Alan Garny Date: Tue Feb 3 18:07:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit b9fe38618dde079d1a5328643871227102d1eb53 Author: Alan Garny Date: Tue Feb 3 18:00:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 103ee73eccc69bf5408cc7284d597f958fb5ab58 Author: Alan Garny Date: Tue Feb 3 17:18:35 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit eed11e48f8e7fab5739e259a4a91376ff01bdb45 Author: Alan Garny Date: Tue Feb 3 16:40:03 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 59feb6e1e0407ec057d6003c446d72d616a76ca5 Author: Alan Garny Date: Tue Feb 3 15:23:07 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 7ad03b2dde09fcaf003444d5f868715c788a0318 Author: Alan Garny Date: Tue Feb 3 15:07:16 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit e09713fe79ea38ac9d935d0ea36f7187bf3b0f1b Author: Alan Garny Date: Tue Feb 3 13:26:04 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 347993316f43b9e567339c77e428f707679aab3d Author: Alan Garny Date: Tue Feb 3 10:56:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit c3ce8b92c70177601e2961f10ef24f91dce4163d Author: Alan Garny Date: Tue Feb 3 10:46:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 59fac207f35c499d31c44e69de2d9f1f4fb8fdda Author: Alan Garny Date: Tue Feb 3 10:44:06 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 8c22957554aa24c06d8366270c1e0906a34017e0 Author: Alan Garny Date: Tue Feb 3 10:14:16 2015 +0100 Some minor cleaning up [ci skip]. Taking advantage of C++ 11. commit 28bf046c54be9bb857c32329b2666c4b5726f235 Author: Alan Garny Date: Mon Feb 2 20:41:17 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit e8b2194bf731284d2177a87b64b8e4c874e64bf4 Author: Alan Garny Date: Mon Feb 2 19:36:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 32804028db6fc06292557b5d3709064476a978e9 Author: Alan Garny Date: Mon Feb 2 19:34:35 2015 +0100 Some minor cleaning up [ci skip]. commit d26db7bfbce17b16a58e459108048512c707b3f2 Author: Alan Garny Date: Mon Feb 2 19:10:58 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit d98e77fb5d594862128237165721f6016e78cf65 Author: Alan Garny Date: Mon Feb 2 18:50:17 2015 +0100 Some minor cleaning up [ci skip]. commit 985f65cd1b78f239938bc939602a96508f73cb96 Author: Alan Garny Date: Mon Feb 2 18:47:09 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 992f53dfa1e8de96753c09f96da9f84b8a57e7f8 Author: Alan Garny Date: Mon Feb 2 18:37:43 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit d6f8ea5be71b0ff422d1e8c56303016de3b8aa62 Author: Alan Garny Date: Mon Feb 2 18:17:59 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit afc8f0958ac9ce5c0c53fb02ce8ce785b29f76dc Author: Alan Garny Date: Mon Feb 2 17:25:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit ceeaf0e0f5462b0132dcd31e49f10da1d4adef8c Author: Alan Garny Date: Mon Feb 2 17:23:36 2015 +0100 Some minor cleaning up [ci skip]. commit bc5bcd61831eaea182b8d838c56ee7bf3c843140 Author: Alan Garny Date: Mon Feb 2 17:04:30 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit d3abd999f47839e32ac985b42347381f1e4c3f55 Author: Alan Garny Date: Mon Feb 2 16:45:42 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 216a5c1a713146f18c32802b4a7997277f259bc1 Author: Alan Garny Date: Mon Feb 2 15:21:25 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 55136baf7fa21a3f89d6a1852a15a0e51bec58c4 Author: Alan Garny Date: Mon Feb 2 15:14:46 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit a9ab2dfa843177ce2c756f714628b8be325dd058 Author: Alan Garny Date: Mon Feb 2 14:49:27 2015 +0100 Some minor cleaning up [ci skip]. commit 89e36a9cb3280d1a5fd6b076f79f676f18388559 Author: Alan Garny Date: Sun Feb 1 11:29:53 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 722c8a1138734393853e791d9a62957664bc35fb Author: Alan Garny Date: Sat Jan 31 22:48:20 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 7c7213a2f1423284e9ad2d5d2b0f21f1d3fe62cb Author: Alan Garny Date: Sat Jan 31 22:41:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit f8a6b136837628bbc72ba2704d769a37dca29a74 Author: Alan Garny Date: Sat Jan 31 20:47:52 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 6b21babe6771cd35cc565fdcd5d2f4a2d2a4c695 Author: Alan Garny Date: Sat Jan 31 20:37:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 05af85471b30c5ffed3e976eb97512f848adffdb Author: Alan Garny Date: Sat Jan 31 14:35:14 2015 +0100 Editor list: don'\''t look up items that don'\''t have a valid line number [ci skip]. commit 4e725f0736f39782e7318c773673d2b81ed74a65 Author: Alan Garny Date: Sat Jan 31 14:30:04 2015 +0100 Some work on the pretty CellML view for a CellML file (#17). commit 637a303e5e09accd41223822eb115f2c93064614 Author: Alan Garny Date: Sat Jan 31 14:06:45 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 76c675a6d8b7497522cab8230fece1be969ca5b6 Author: Alan Garny Date: Fri Jan 30 13:01:25 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Let the user know if we find a ‘reaction’ node. commit b39a91d4a03a4904b14a2773bb73379a28ab25d3 Author: Alan Garny Date: Fri Jan 30 11:22:58 2015 +0100 NSIS packaging: set the icon, vendor and version information (closes #545). commit 0c105d369f0550b7f43c03129c4ee2d9e3316468 Author: Alan Garny Date: Thu Jan 29 19:39:17 2015 +0100 OS X: fixed an issue with opening an OpenCOR-supported file by double clicking on it when OpenCOR is not already running (closes #544). commit 22db2e5c635448e39cb552d5b0524e756d6f8116 Author: Alan Garny Date: Thu Jan 29 19:00:43 2015 +0100 Help plugin: enable printing only if printers are available (closes #543). commit 8891af0f51c4cbc2224b4609af4f2f220a1e5e74 Author: Alan Garny Date: Thu Jan 29 18:15:07 2015 +0100 Some minor cleaning up [ci skip]. commit c1e5ebcc992b994a2baf8a1d4a583aefb13feade Author: Alan Garny Date: Thu Jan 29 18:09:14 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (closes #530). commit e76e247d44737e27c2d457fdf9f13ed3fc957b34 Author: Alan Garny Date: Thu Jan 29 16:41:58 2015 +0100 Some minor cleaning up [ci skip]. commit a0513c344d03a3ec53893605ab0c27d41e0cbd54 Author: Alan Garny Date: Thu Jan 29 11:10:42 2015 +0100 Some minor cleaning up [ci skip]. commit 3f201b8175e45891a8952d15aba601cdbf702f02 Author: Alan Garny Date: Thu Jan 29 09:55:54 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 93e95ede65c5e2ac76546ec301d7377abecd565f Author: Alan Garny Date: Wed Jan 28 20:15:27 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 1f31c340cdb31fbc2c4d54f128d2508e921d599e Author: Alan Garny Date: Wed Jan 28 18:48:54 2015 +0100 Some minor cleaning up [ci skip]. commit 45ce8ca0fff38fe79012c93d4185ac8a17080c7e Author: Alan Garny Date: Wed Jan 28 16:21:00 2015 +0100 Addressed an issue with some Qt libraries being ignored for some plugins when building QScintilla and Qwt manually (closes #542). commit 8a26610d08a044a28f46f10847416c570f17f347 Author: Alan Garny Date: Tue Jan 27 19:32:55 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 5dcface5d19af3bfaa7560d4d8d1581bf89ba7c0 Author: Alan Garny Date: Tue Jan 27 19:19:32 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 3b7ca491bb1e69e62ee44865e9c38df123eafd83 Author: Alan Garny Date: Tue Jan 27 19:03:19 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit fec97d44dbd3f77e8ca9d86762efa37db4362bfd Author: Alan Garny Date: Tue Jan 27 17:16:52 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit b6ef5054d2033d600583df16c5d1b89fc523b2d0 Author: Alan Garny Date: Tue Jan 27 16:47:39 2015 +0100 Some minor cleaning up [ci skip]. commit b8032c1bc02b7309157e9d4accea5cca13cd2db6 Author: Alan Garny Date: Tue Jan 27 16:08:39 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 2456c76d69610a4d50b177f854cacb4540ec0019 Author: Alan Garny Date: Tue Jan 27 15:01:29 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 041e24a2da1f516f17f9d8014bed01829c92a3e9 Author: Alan Garny Date: Tue Jan 27 14:43:56 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 2a22cfd03824a615e6f3a7bfe3a35be0466fe6ec Author: Alan Garny Date: Tue Jan 27 14:10:46 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 4077d3325be76737a8e7af11dd049c9ad3be99d0 Author: Alan Garny Date: Tue Jan 27 13:56:51 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 501126852b376e0f9f1f4517ccfe9711a3e72f87 Author: Alan Garny Date: Tue Jan 27 13:23:01 2015 +0100 CellML Annotation view: don'\''t show '\''empty'\'' component mappings (closes #541). commit 488ee3ed1f5850ca9b9de01b41d23ecc14cec4ac Author: Alan Garny Date: Tue Jan 27 11:42:13 2015 +0100 CellML Annotation view: don'\''t show '\''empty'\'' component mappings (closes #541). commit dd9049ef74bae508f03dfa0d2d0aa509d03a9a47 Author: Alan Garny Date: Mon Jan 26 18:38:52 2015 +0100 CellML Annotation view: don'\''t show '\''empty'\'' component mappings (closes #541). commit d31672ce46ef0a3aa54bc81bdafd3959c88fd25e Author: Alan Garny Date: Mon Jan 26 18:34:23 2015 +0100 Some minor cleaning up [ci skip]. commit 7789eba14dd16804457d143cf1643e530ba25172 Author: Alan Garny Date: Mon Jan 26 18:18:23 2015 +0100 CellML Annotation view: mention the name, if any, of a group relationship (closes #540). commit 555273e1680b77bb2e2def8fe7937ef7cbcb8dff Author: Alan Garny Date: Mon Jan 26 18:01:50 2015 +0100 Some minor cleaning up [ci skip]. commit 57a2f74cbcea0b9d221395ae344282addc08e805 Author: Alan Garny Date: Mon Jan 26 17:55:09 2015 +0100 Some minor cleaning up [ci skip]. commit 886429131ee8bf60ae94c2d659a1d787af77f664 Author: Alan Garny Date: Mon Jan 26 17:33:59 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit b5793fd08273967e9364b32b0e46c4adcfb8a8c7 Author: Alan Garny Date: Mon Jan 26 16:15:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 06f011f586234a650699883e77ca3211a0eb8244 Author: Alan Garny Date: Mon Jan 26 16:08:41 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 94df9380ff93545cf69e0102a033f253ca08ae92 Author: Alan Garny Date: Mon Jan 26 14:44:52 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit a852e96fa7f9c6a0f9e8c6b3a9162f9118bdd91f Author: Alan Garny Date: Mon Jan 26 11:10:47 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit e0f54b1613527444ad03ff18237e00a7981e8a44 Author: Alan Garny Date: Fri Jan 23 19:12:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 57f8f136f14f0b7a0b885560ae429b62eb2a8fe9 Author: Alan Garny Date: Fri Jan 23 18:26:39 2015 +0100 Some work on the pretty CellML view for a CellML file (#17). commit 00c427ff5c1a3a73ad06fd3c24a29cbc48631460 Author: Alan Garny Date: Fri Jan 23 17:55:05 2015 +0100 Some minor cleaning up [ci skip]. commit fa2af8a761466a13e2084bf3dd5798b60de8ef59 Author: Alan Garny Date: Fri Jan 23 17:53:31 2015 +0100 Some minor cleaning up [ci skip]. commit aa0ea3e2466fe7339693a475016c8bff7da18fb2 Author: Alan Garny Date: Fri Jan 23 17:40:07 2015 +0100 Some minor cleaning up [ci skip]. commit 9026664f73c6d6910bdacbf82a02c9ac659d1a91 Author: Alan Garny Date: Fri Jan 23 16:53:09 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit dc7800d3f87f65cd6bb0b9f992029d441a7c5001 Author: Alan Garny Date: Fri Jan 23 16:25:03 2015 +0100 Some minor cleaning up [ci skip]. commit b8b0fc6e8a9b569ac01e98a7717025af87c625af Author: Alan Garny Date: Fri Jan 23 15:35:44 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Dealing with the styling of strings. commit a550bcc06fb970c08ccdab106f3cfb54fc9ad163 Author: Alan Garny Date: Fri Jan 23 14:22:12 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Dealing with the styling of strings. commit cf7b4e69dd68d3e6b80b25e0c54dd60fdca61ecc Author: Alan Garny Date: Fri Jan 23 14:19:07 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Dealing with the styling of strings. commit bfc4d68c1f03bd38e7a064785290ef5615e59a0b Author: Alan Garny Date: Fri Jan 23 10:29:05 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 07e9bfe1f2fb7b7da416a380e17e1ea7abdd3bed Author: Alan Garny Date: Fri Jan 23 10:28:51 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 204a951382f3dd1d9ffd7191159f6bd8a8b3bde7 Author: Alan Garny Date: Fri Jan 23 09:21:02 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit ece614e176f201ba13ce05b9efe82da17ad4875d Author: Alan Garny Date: Thu Jan 22 18:37:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 904dcc0e5d8b8935ecd006a7f203d38c39e2ba1a Author: Alan Garny Date: Thu Jan 22 18:35:20 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit cd04a11bbd962d3320d097a035e2679688f1ca54 Author: Alan Garny Date: Thu Jan 22 18:18:05 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 58430f05d285e89f37944e47101e6de81d084f26 Author: Alan Garny Date: Thu Jan 22 17:48:15 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit cfcac6eec8f27fb47edaa8966705cdf31124e9ab Author: Alan Garny Date: Thu Jan 22 17:47:58 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit bcd612a8f4284d457a4ef70b4e8ec7ae6089c13b Author: Alan Garny Date: Thu Jan 22 17:20:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit fbd38e9a0ba1e3a8a660fd039992f61ec905f322 Author: Alan Garny Date: Thu Jan 22 16:19:20 2015 +0100 Some minor cleaning up [ci skip]. commit 8415191f3bd6a1c485c7bbf4613f9f141cbc3620 Author: Alan Garny Date: Thu Jan 22 15:10:11 2015 +0100 The previous commit fixed our issue with Travis-CI on OS X, so removed our debug information. Bloody Brew for using a symbolic link for the Qt libraries! commit 8510af4252c4b518bb1da3ec94748677f3c6ef2e Author: Alan Garny Date: Thu Jan 22 14:42:58 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit a7fc1bb72f55d6adf88cec31bc159da735d6d0b0 Author: Alan Garny Date: Thu Jan 22 13:44:35 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 2d0e7ba217ed368ed8542b3104b292269237e348 Author: Alan Garny Date: Thu Jan 22 13:37:26 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 24dcd0aa2d60f8b847ad1ed527a31054031d04c8 Author: Alan Garny Date: Thu Jan 22 13:18:01 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 8e089f1f5fbf5c09f03fdc91b19f10802c00393c Author: Alan Garny Date: Thu Jan 22 11:59:10 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 2c6714a8a4112292dd836f40439cf8d3ca7f2501 Author: Alan Garny Date: Thu Jan 22 11:31:33 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 1abecd96f6d354386e9319e679fefb33099aa56b Author: Alan Garny Date: Thu Jan 22 11:05:34 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 81d41c3dfb0880733454914ff46cc47c0986d5ea Author: Alan Garny Date: Thu Jan 22 10:36:10 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 88d089707798956b27a35171c86ae8e31312eaab Author: Alan Garny Date: Thu Jan 22 09:36:28 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 3a75dc31e8ec62d547b6029e5405414192148e87 Author: Alan Garny Date: Wed Jan 21 20:48:42 2015 +0100 Travis-CI: trying to understand why the tests don'\''t pass on OS X while they do locally. commit 4da6130c28538c26a6c147bee40fb7325f752572 Author: Alan Garny Date: Wed Jan 21 20:02:32 2015 +0100 Travis-CI: reverting our use of ninja to speed up the build since it keeps failing (#539). commit 6d1c5224afe2f2403019f49b014d2771c4365a18 Author: Alan Garny Date: Wed Jan 21 20:00:08 2015 +0100 Slight update to our main CMake file [ci skip]. commit 890cb91b9cfd3473a3f089f6bea6ef6905ffdb93 Author: Alan Garny Date: Wed Jan 21 19:39:23 2015 +0100 Travis-CI: some work on using ninja to speed up the build (#539). commit 8704bc73727baa428eba7cf7a4b6a0c058f51c89 Author: Alan Garny Date: Wed Jan 21 19:25:57 2015 +0100 Travis-CI: some work on using ninja to speed up the build (#539). Use the latest build of ninja. commit d0041166458a4278bbb973da15371862268e6c36 Author: Alan Garny Date: Wed Jan 21 18:55:05 2015 +0100 Travis-CI: some work on using ninja to speed up the build (#539). Account for the fact that g++ might fail at some point… commit 884e629a26305735dda9fdd7bde843e80ba9f735 Author: Alan Garny Date: Wed Jan 21 18:06:55 2015 +0100 Travis-CI: some work on using ninja to speed up the build (#539). Also enabled a new CMake policy that got introduced in CMake 3.1.0. commit d5e8c21fb3bc14b3e62e83850aa7b7d6f5ab1fc4 Author: Alan Garny Date: Wed Jan 21 17:36:45 2015 +0100 Travis-CI: some work on using ninja to speed up the build (#539). commit 2f936b53b35647f7a6d1cb5004778a5c6eb90375 Author: Alan Garny Date: Wed Jan 21 17:26:08 2015 +0100 Travis-CI: simplified the Linux part (and temporarily disabled the OS X part). commit c80fdbce319f257c7a4a7430cf9400f0fe1bf156 Author: Alan Garny Date: Wed Jan 21 16:30:59 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit fb02f87e2c4193e44e8a1d85aea298d50a595589 Author: Alan Garny Date: Wed Jan 21 16:08:29 2015 +0100 CellML support: a file that is considered a CellML file keeps that status while it is opened (closes #538). commit d4855f9a421c2552c6f57296b986a099653b83bf Author: Alan Garny Date: Wed Jan 21 15:29:59 2015 +0100 Some minor cleaning up [ci skip]. commit b417004af81daba0488a025f50592e261cf47b43 Author: Alan Garny Date: Wed Jan 21 10:57:14 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 9195dc96a1ca6fc51afba9277ac4b9a6a12b0d85 Author: Alan Garny Date: Wed Jan 21 10:56:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit a31ac879303154852c826064951270f838e4b63d Author: Alan Garny Date: Wed Jan 21 10:50:57 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests don'\''t work. commit bbb930aa14b69489f574855905fa04992e96960a Author: Alan Garny Date: Wed Jan 21 10:32:18 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests don'\''t work. commit a0c6a8c5fb8058ecdacec6cdf6365f7e456e3a58 Author: Alan Garny Date: Wed Jan 21 10:26:37 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests don'\''t work. commit e48f7714609047d12951475280f9e54ad8b2edb9 Author: Alan Garny Date: Tue Jan 20 19:44:16 2015 +0100 Some minor cleaning up [ci skip]. commit 6ced984869dc8dcfa0aa61a8152ee5bdf321fcbc Author: Alan Garny Date: Tue Jan 20 18:55:45 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests don'\''t work. commit 4fed0635877f12335d653e098b4960edf5f071a4 Author: Alan Garny Date: Tue Jan 20 16:51:50 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494). commit 81132f05dd7f1283e3811cdc93c992f5d2c71df8 Author: Alan Garny Date: Tue Jan 20 15:40:01 2015 +0100 Don'\''t check for new versions of OpenCOR unless we are the main instance. Also remove global instances at suitable times [ci skip]. commit b323ec76d3c57f670b9014d534ec40a2bc0a7884 Author: Alan Garny Date: Tue Jan 20 10:21:02 2015 +0100 Tests: got all of them to pass fine on Windows. commit 88c5b7e217d1a5972d3f020d9b1507f74cf0b8f8 Author: Alan Garny Date: Mon Jan 19 18:43:54 2015 +0100 Copy rather than move our test programs [ci skip]. I originally thought it would be a good idea to move them, but this confuses CMake more than anything when having to rebuild something. commit a4c83f386123555891cb158d05c69156e8a273bf Author: Alan Garny Date: Mon Jan 19 18:04:22 2015 +0100 Some minor cleaning up [ci skip]. commit 16b5cc3a15604eec58d1cebb15f18db1f8a5eff0 Author: Alan Garny Date: Mon Jan 19 17:51:55 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 8e794732d77be96ecade46a2a1f8d5cb596df96a Author: Alan Garny Date: Mon Jan 19 17:25:29 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Allow for comments in a group definition. commit 5df377a12ada4fa0708824ca77f854234ca522bc Author: Alan Garny Date: Mon Jan 19 17:10:48 2015 +0100 Scintilla support: replace tabs with spaces [ci skip]. commit 4ba2183202ff5c8945105fcc9dfb8b000a251a35 Author: Alan Garny Date: Mon Jan 19 17:05:11 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Some work on our tests. Also, added support for unit definitions within components. commit e7d5a65a72b281b6eea7e1ce0a40766b0802f5e4 Author: Alan Garny Date: Mon Jan 19 15:56:43 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Make our tests pass. commit 52ee00f2e3a838588b69224bf93b6fe80f8ff205 Author: Alan Garny Date: Mon Jan 19 15:56:05 2015 +0100 CellML Tools tests: updated some expected output [ci skip]. Those should have been updated long ago, but because the tests were ‘passing’, we overlooked them… commit 2706d2dfa25a1c03e292d0b5ee234cc69601b954 Author: Alan Garny Date: Mon Jan 19 15:55:13 2015 +0100 Tests: properly clean up ourselves once we are done [ci skip]. commit 07f3a5e03a7e86a1f319680483b64103c4feecd3 Author: Alan Garny Date: Mon Jan 19 15:54:48 2015 +0100 Tests: fixed some paths. This was actually broken (for the CellML Tools plugin) for quite some time! It’s just that because this resulted in the comparison of empty strings, then everything was ‘fine’… commit 68003391d963d1de27b74f3db7aab9c394d54428 Author: Alan Garny Date: Mon Jan 19 15:52:58 2015 +0100 Some minor cleaning up [ci skip]. commit 674fe3090eebbc6019770848f7de8ddfb3e96f28 Author: Alan Garny Date: Mon Jan 19 15:52:28 2015 +0100 Make files: move rather than copy the test executables [ci skip]. commit 20bae6e2470d9896746f6f0d98653cfe36dc8b6e Author: Alan Garny Date: Mon Jan 19 14:00:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Added a couple of (failing for now) tests. commit 9867f1c95979aeb3855785a67f25b0e11e1b8a41 Author: Alan Garny Date: Mon Jan 19 13:50:25 2015 +0100 Some minor cleaning up [ci skip]. commit c49ada5064ad8aceeb44d12fa268b6c59fe0e16b Author: Alan Garny Date: Mon Jan 19 13:36:27 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Had forgotten to trim the text before testing it for emptiness. commit 8140415bfe45be76e7d0385922daa173b0dde7b6 Author: Alan Garny Date: Mon Jan 19 13:29:29 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Addressed a small issue with comments. commit 429c202ca9992abc4739d262cd215a2315f60331 Author: Alan Garny Date: Mon Jan 19 11:11:34 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Made the syntax highlighting as fast as possible. commit 86eef4e164131f21b12e6da290a3a58a61c25db9 Author: Alan Garny Date: Sun Jan 18 17:32:47 2015 +0100 LLVM: done upgrading to version 3.5.1 (closes #535). commit a2d5697258a2dc531e2c3b5b01959da6de1fc57e Author: Alan Garny Date: Sun Jan 18 14:14:19 2015 +0100 LLVM: some work on upgrading to version 3.5.1 [ci skip]. commit 210d23c14b5e4efe1ccb10d751e772e809f235ac Author: Alan Garny Date: Sat Jan 17 11:35:20 2015 +0100 Some minor cleaning up [ci skip]. commit 01b1657405133ce0e5ad02e64bfb9f0f76eb8ab8 Author: Alan Garny Date: Sat Jan 17 11:06:02 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for th…e pretty CellML format (#530) [ci skip]. Improved our use of regular expressions to style keywords and numbers. commit 36313a65a0469463a94f52c1c5114e6eb77797f1 Author: Alan Garny Date: Fri Jan 16 19:59:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Fixed an issue that might be coming from QScintilla. commit 736a3f115368080d0625214661334ae6642b23c3 Author: Alan Garny Date: Fri Jan 16 19:51:19 2015 +0100 Revert "Some minor cleaning up [ci skip]." This reverts commit e52093a973d40b255653e20af98f178ac498185d. commit e52093a973d40b255653e20af98f178ac498185d Author: Alan Garny Date: Fri Jan 16 19:18:58 2015 +0100 Some minor cleaning up [ci skip]. commit 14432f6df7f9f7a1430d25a6f2b0829975319f2f Author: Alan Garny Date: Fri Jan 16 19:01:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Added support for comments. Also better handle the use of empty lines. commit a5162602dd0ca085a902aa35813bee0a4cb953be Author: Alan Garny Date: Fri Jan 16 18:02:21 2015 +0100 Addressed an issue with the CellML API [ci skip]. commit 08aa1edd9250c8d5dcbf5fd32d5cc2e9ff351ce7 Author: Alan Garny Date: Fri Jan 16 13:37:45 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Support the styling of groups. commit 597779e0b85d44d3af3c4ea8358f8e2955fdd907 Author: Alan Garny Date: Fri Jan 16 13:37:24 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Started handling groups. commit 73be7987d1727bc85be75bf6ed5b691b5f2cbbec Author: Alan Garny Date: Fri Jan 16 11:33:18 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Added support for the definition of variables. commit 99edab158a80372cc58795bb24bd50c0e29f3842 Author: Alan Garny Date: Fri Jan 16 11:32:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. Now handle the definition of variables. commit 63c56f3d35bc055dc1c589099501995aef5594d8 Author: Alan Garny Date: Fri Jan 16 10:58:50 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Can how style numbers. commit 743a2529c5436dc418e9ffcc16906591045b6c3d Author: Alan Garny Date: Fri Jan 16 09:54:15 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Added some keywords for standard units and prefixes. commit 79d05f6399513181ab0e71652a0084e437486ccb Author: Alan Garny Date: Fri Jan 16 09:22:57 2015 +0100 Some minor cleaning up [ci skip]. commit e19c3de2c1c8109701f3a6a6e4bb8c13ae965a09 Author: Alan Garny Date: Thu Jan 15 19:13:01 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. We seem to be finally done with styling parameter groups together with // and /* XXX */ comments. commit 5559bd4e7716643a70037f900cd5eeff7f73d5c4 Author: Alan Garny Date: Thu Jan 15 17:43:09 2015 +0100 Some minor cleaning up [ci skip]. commit 905ccf19dfa2760b128428c19cc50a3fa1795386 Author: Alan Garny Date: Thu Jan 15 17:37:35 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit ff14bee44e73d584f5ad8f24caa8cd18e4b676af Author: Alan Garny Date: Thu Jan 15 17:26:02 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit aff44daa63acdfcab9897910c12bf37fe6dcc7fa Author: Alan Garny Date: Thu Jan 15 17:22:01 2015 +0100 Some minor cleaning up [ci skip]. commit 60bdbe356396f68f0939238a134cbfe68e6735d9 Author: Alan Garny Date: Thu Jan 15 14:25:47 2015 +0100 Some minor cleaning up [ci skip]. commit 79e85a61afb3a362c42a6d4fc9f6ede31a960c5c Author: Alan Garny Date: Thu Jan 15 14:20:31 2015 +0100 Some minor cleaning up [ci skip]. commit cbda47c658e28ed494005cdab3d7f293223f2180 Author: Alan Garny Date: Thu Jan 15 14:20:19 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 2506339640482dc47120f9083c8cbbcbb2c2136f Author: Alan Garny Date: Thu Jan 15 11:30:00 2015 +0100 Some minor cleaning up [ci skip]. commit 93c28af299c527a4d87bc6ff379f01a9b067f71b Author: Alan Garny Date: Thu Jan 15 10:20:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit c48b10c2d190599bd69d6058207b67ba534c0634 Author: Alan Garny Date: Wed Jan 14 18:21:38 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. ‘Normal’ keywords shouldn’t be styled when in a parameter group, and ‘parameter’ keywords shouldn’t be styled when not in a parameter group. commit 9c005460d8f004ea4adcb59de5d88168dcc48f9d Author: Alan Garny Date: Wed Jan 14 18:16:23 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Comments should have precedence over parameter groups. commit dc0cd67a8eef24080b2e3fada854ce380da5068c Author: Alan Garny Date: Wed Jan 14 16:52:41 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Can now style parameter groups (i.e. {XXX}). commit 14fb839c40bcb1779d6e3734cb853c2237fb015d Author: Alan Garny Date: Wed Jan 14 14:16:10 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit f80b9a9c0f722c159221a69d101f2bfea79275fb Author: Alan Garny Date: Wed Jan 14 14:11:55 2015 +0100 Some minor cleaning up [ci skip]. commit ec37e66d65bdfebebec55077aa5e0f22ae340ea1 Author: Alan Garny Date: Wed Jan 14 13:49:44 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 9b0e19372ccc907c8b7481b1db480bac3f9ba3ab Author: Alan Garny Date: Wed Jan 14 13:13:06 2015 +0100 Some minor cleaning up [ci skip]. commit 4a6407c8a78001fbaa89f620b05dc08fc514f461 Author: Alan Garny Date: Wed Jan 14 11:53:24 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Now style various groups of keywords. commit 5b284e627d0c83bdccddc92a94eae9326fbf9e48 Author: Alan Garny Date: Wed Jan 14 10:35:21 2015 +0100 Some minor cleaning up [ci skip]. commit 99b5757fe2bce98a1d92cbfa2143332b19a4cdbf Author: Alan Garny Date: Wed Jan 14 10:17:05 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Updated the user documentation. commit 760e60941dba3781b305ca9c3bf9d8a586f85937 Author: Alan Garny Date: Tue Jan 13 18:58:41 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Now handle both // and /* XXX *// comments. commit b383baa56a6d2013e4142d32fa926f6898a58b17 Author: Alan Garny Date: Tue Jan 13 18:46:14 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Addressed the case where full lines are surrounded by /* XXX */. commit ac18a1482e276f8114fb25155f7546301dba81f3 Author: Alan Garny Date: Tue Jan 13 18:42:42 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Addressed the case where full lines are surrounded by /* XXX */. commit 34584e673f71889c3f4594e1c9a3535adf3d3046 Author: Alan Garny Date: Tue Jan 13 18:41:43 2015 +0100 Some minor cleaning up [ci skip]. commit 03913db95113848336b76eee1d3f1f16053c206a Author: Alan Garny Date: Tue Jan 13 18:03:13 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Now handle both // and /* XXX *// comments. commit e2257a9331a5f9ab3f64f7ba804d081d51771860 Author: Alan Garny Date: Tue Jan 13 15:31:46 2015 +0100 Some minor cleaning up [ci skip]. commit db0c791674fe0dd1ae77d637bb877cef58ef5f8e Author: Alan Garny Date: Tue Jan 13 14:30:34 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Several (full) lines that are selected are now commented using // rather than /* XXX */. commit b44fac1543c8899dd064f76c52be4554446e09f7 Author: Alan Garny Date: Tue Jan 13 14:20:10 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Several (full) lines that are selected are now commented using // rather than /* XXX */. commit 3234966953a98feea8e93a54612be8118c63c2ef Author: Alan Garny Date: Tue Jan 13 14:19:12 2015 +0100 Some minor cleaning up [ci skip]. commit 7db91abf81f01cf8c17688378b31e87ef8fd0291 Author: Alan Garny Date: Mon Jan 12 19:09:05 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. Before, we used to split the text to style into lines, but that caused problems when styling parameters that didn’t fit one line. Also, this would have caused problems for comments such as /* I am a comment */. So, now, we style the whole line recursively. At this stage, we can style comments that use //. commit 3851e00cd03059ad3f9f24f5f293ca3f225be1bd Author: Alan Garny Date: Mon Jan 12 16:52:22 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Can now (un)comment some selected text or the current line (if no text is selected). commit b8075cdac0e049f1c96668a06001ea79d451f2b0 Author: Alan Garny Date: Mon Jan 12 15:31:08 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit d2d30b84a1da4274a849d07639acdd884d7f557f Author: Alan Garny Date: Mon Jan 12 11:32:28 2015 +0100 Some minor cleaning up [ci skip]. commit 54c2f97d7d43ddcbdbac8665fbfba11a96f0ae94 Author: Alan Garny Date: Mon Jan 12 11:20:30 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. commit 07c1b9b8f5fd48a74be82f9622ece73ce16ff173 Author: Alan Garny Date: Fri Jan 9 18:08:15 2015 +0100 QScintilla-based editing views: fixed an issue with only the current view getting its read-only state updated (closes #534). commit 8b61fdbe04a59b685332dcab334ba4e3e295b358 Author: Alan Garny Date: Fri Jan 9 17:46:25 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 35c8e62022edd705866ac3dfaf6baed5d0c4da60 Author: Alan Garny Date: Fri Jan 9 17:03:38 2015 +0100 Some minor cleaning up [ci skip]. commit 92efb3ce72425b35c4c7a725fe608d3335ae667f Author: Alan Garny Date: Fri Jan 9 13:32:11 2015 +0100 Some minor cleaning up [ci skip]. commit cd54a5d2d6317e757bbc335e5702bec2b083c447 Author: Alan Garny Date: Thu Jan 8 19:43:22 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 91644506752c74c072c6bffe11e05554ad19eed2 Author: Alan Garny Date: Thu Jan 8 18:39:47 2015 +0100 Some work on the pretty CellML view for a CellML file (#17) [ci skip]. Improved the way we detect whether the contents of the view has been modified. commit 509a91ea3269dbc151c61de53634f4d91974b24b Author: Alan Garny Date: Thu Jan 8 18:24:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 2a7d531e627d7fd8487349af13b5568681b8a8b0 Author: Alan Garny Date: Thu Jan 8 17:00:22 2015 +0100 QScintilla: updated the binaries now that we need QsciLexerCustom (#530) [ci skip]. commit f3f47ae219e6d7fd1c1dd1749cc38e6852364f38 Author: Alan Garny Date: Thu Jan 8 15:56:50 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit a067557b71ec857e6cfdbd11074f54e7254d0b62 Author: Alan Garny Date: Thu Jan 8 15:04:36 2015 +0100 Scintilla support: make a tab four spaces wide [ci skip]. commit 236e624491848cb153928f86ab50672424a75b28 Author: Alan Garny Date: Thu Jan 8 13:06:17 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 2991a8399ca22874edc61c38f1be71c3677eb468 Author: Alan Garny Date: Thu Jan 8 12:48:24 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit cc8a79ebbed16ed936e55660be003db2cd040c2f Author: Alan Garny Date: Thu Jan 8 11:22:53 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format (#530) [ci skip]. commit 1c419df5c719c3ab19ed6fce6ad38c36a67f282d Author: Alan Garny Date: Thu Jan 8 10:38:44 2015 +0100 QScintilla support: changed the font to be used on Windows [ci skip]. commit 7b56b4261386498cff4f3ebde0c8b6750e9eda66 Author: Alan Garny Date: Wed Jan 7 17:21:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit 6c35a3a4c854a76c4dfcd5380cdf77c37243b0e3 Author: Alan Garny Date: Wed Jan 7 15:04:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit fac52c77a243887eab33b1a9561898037ff9b86a Author: Alan Garny Date: Wed Jan 7 14:50:48 2015 +0100 CellML support: don'\''t necessarily consider a file with a .cellml extension as a CellML file (closes #533). commit 6d33c181a54de71bd61a3d29159a10abe585d674 Author: Alan Garny Date: Wed Jan 7 13:39:14 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter (#494) [ci skip]. commit df0c6ef430c88261de224ad9b47a7a36c9b170dc Author: Alan Garny Date: Tue Jan 6 17:57:00 2015 +0100 CellML support: improved CellML API related error messages (closes #529) [ci skip]. commit b2a3971feede685ff053282bc106af52231cc885 Author: Alan Garny Date: Tue Jan 6 17:53:49 2015 +0100 CellML support: improved CellML API related error messages (closes #529). commit c582a741318f3451438d11119d843ff76072429a Author: Alan Garny Date: Tue Jan 6 16:24:42 2015 +0100 Fixed an issue with reloading a non-CellML file in a CellML-based view doing nothing (closes #528). commit a162c5de34d1e24b03b236f29c505fa26f7c9320 Author: Alan Garny Date: Tue Jan 6 15:08:53 2015 +0100 Some minor cleaning up [ci skip]. commit 6a9e2de951bfe480ef7163a418052c5a17627699 Author: Alan Garny Date: Tue Jan 6 15:07:54 2015 +0100 Slight improvements to our CellML file manager [ci skip]. commit 1becaf10515ff718f0b3a14a87e6543a30a96f4d Author: Alan Garny Date: Tue Jan 6 13:53:28 2015 +0100 Revert "Some minor cleaning up [ci skip]." This reverts commit 7f6253e19883aa65d97f0a920d40fe3fd79fbc35. commit 7f6253e19883aa65d97f0a920d40fe3fd79fbc35 Author: Alan Garny Date: Tue Jan 6 13:52:24 2015 +0100 Some minor cleaning up [ci skip]. commit 7444d077780feec05b1ad707519d3f3776ebec94 Author: Alan Garny Date: Tue Jan 6 13:25:25 2015 +0100 Improved the saving of a file [ci skip]. commit 067b8b000148820dfceaaad68488921f0cd72e60 Author: Alan Garny Date: Tue Jan 6 11:45:17 2015 +0100 Some minor cleaning up [ci skip]. commit 7bbc9e211e566d4d91e175b1280000613a15c4a2 Author: Alan Garny Date: Tue Jan 6 11:20:04 2015 +0100 Improved our way to check that a file is a CellML file [ci skip]. In the case of a file that didn’t have the expected .cellml file extension, we used to load the file as an XML file and check whether its root element was a model element with either the CellML 1.0 or 1.1 namespace. Now, we simply try to load the file using the CellML API, which is better for the future (e.g. we will automatically handle future versions of CellML). commit b29220f1511369f704a347c926d009e7ce978b2b Author: Alan Garny Date: Tue Jan 6 11:15:32 2015 +0100 Addressed an issue with the saving of a file using the Raw (CellML) view [ci skip]. We were not checking that the file had an editor associated with it. commit 8ab72d1d450ef4276e18cbd7d79916674f15bf5c Author: Alan Garny Date: Tue Jan 6 10:40:34 2015 +0100 Some minor cleaning up [ci skip]. commit d3ce010b61e32f9cd2e3629234078843e343d1ae Author: Alan Garny Date: Tue Jan 6 09:57:00 2015 +0100 Some minor cleaning up [ci skip]... commit 74ec0a9e208ccc7017d08c368373b83d72fca6c2 Author: Alan Garny Date: Mon Jan 5 20:36:40 2015 +0100 CellML support: to load an invalid CellML file may crash OpenCOR (closes #527). commit 3c91bc1816fd3ccaa3c1c18367c0f48fd1f7f976 Author: Alan Garny Date: Mon Jan 5 19:34:59 2015 +0100 CellML support: to load an invalid CellML file may crash OpenCOR (closes #527). commit 64b660be5ad942567f09cefe4a34172574b1bcfa Author: Alan Garny Date: Mon Jan 5 19:07:22 2015 +0100 Some minor cleaning up. commit 3e370a7a286750449a13f95bfb0e01b10e225d72 Author: Alan Garny Date: Mon Jan 5 11:34:34 2015 +0100 Developer documentation: updated the reference to the version of the CellML API that we use (closes #526). commit 1b92af649278f9bc19ea54f8df0f12879f46694c Author: Alan Garny Date: Sun Jan 4 22:46:08 2015 +0100 jQuery: now use version 2.1.3 rather than version 1.11.2 (closes #525). commit 7e868634e7a1cb0ea7342c36a560dc1151d72955 Author: Alan Garny Date: Sun Jan 4 22:30:38 2015 +0100 jQuery: upgraded to version 1.11.2 (from version 1.11.1) (closes #524). commit 8ff86645f65bc0ef552828f9c37e7ed3e3246041 Author: Alan Garny Date: Mon Dec 22 01:29:37 2014 +0100 New snapshots. commit 3d585b858283c54b193c0b741c7c4c451264cdcd Author: Alan Garny Date: Mon Dec 22 01:21:12 2014 +0100 Oops, forgot to remove a debug trace... [ci skip] commit e3a384cae6f7120f286a298e9e5d75629bf48662 Author: Alan Garny Date: Mon Dec 22 01:19:03 2014 +0100 Saving files: now first save to a temporary file and then overwrite the original file (closes #523). commit 0e68b7e739c25e6fdd6ca435a4a212ebe36c365f Author: Alan Garny Date: Mon Dec 22 00:57:02 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file (#523) [ci skip]. commit e8c9ebafcd771da0aeefa3d504b49e1ae1fe5aed Author: Alan Garny Date: Mon Dec 22 00:36:53 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file (#523) [ci skip]. commit 71222b47e5b9d50b101e889a4e0f1a284a1a7a6a Author: Alan Garny Date: Sun Dec 21 23:46:37 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file (#523) [ci skip]. commit d1f65039827c7734eb911c5058d1b1342ba1799c Author: Alan Garny Date: Sun Dec 21 23:40:20 2014 +0100 Some minor cleaning up [ci skip]. commit 5c1e50d99bb23160cca554c4b73f2d76d980763c Author: Alan Garny Date: Sun Dec 21 23:26:23 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file (#523) [ci skip]. commit 768caab0024a3414ab2f273737aec85a11073ab6 Author: Alan Garny Date: Sun Dec 21 23:25:41 2014 +0100 Some minor cleaning up [ci skip]. commit 17b65343409621a24b4505f3861347bebce36fe3 Author: Alan Garny Date: Sun Dec 21 23:08:07 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file (#523) [ci skip]. commit 520f644e1e85dc1b64ccaa5b797eb102d16b3a00 Author: Alan Garny Date: Sun Dec 21 23:02:13 2014 +0100 Slight change for the OS X build [ci skip]. commit 40d27d7a0c5a6141b43825281e1ee383e135acfc Author: Alan Garny Date: Sun Dec 21 22:53:00 2014 +0100 Some work related to retrieving and using temporary file names [ci skip]. commit b8a998b44b91114324c6df79853c715750ce1f20 Author: Alan Garny Date: Sun Dec 21 21:47:23 2014 +0100 Some cleaning up of our file manager code [ci skip]. commit b37323fcb30176601ea530c187f105d5daa1d147 Author: Alan Garny Date: Fri Dec 19 18:17:02 2014 +0100 Some minor cleaning up. commit f98d617205e39bafd550256e94eaeaa71a857209 Author: Alan Garny Date: Fri Dec 19 16:31:12 2014 +0100 Some minor cleaning up [ci skip]. commit 96856fc001f7c088a7dcbe583dd6f4249961cfed Author: Alan Garny Date: Fri Dec 19 16:27:00 2014 +0100 Fixed an issue about none of the recent snapshots working properly on vanilla Linux (closes #519). This basically reverts f543e70d4a0d378988ae44071d9cf30977bc3a2f. Why on earth did I ever do that in the first place?! commit ab4f1de332bec44d7c951a64446d598f6dc77df0 Author: Alan Garny Date: Fri Dec 19 14:13:47 2014 +0100 Qwt library: upgraded to version 6.1.2 (#522). commit aaaf0ff34b221af9c3b4f811bf96674db58b8edf Author: Alan Garny Date: Fri Dec 19 13:26:28 2014 +0100 Qwt library: some work on upgrading to version 6.1.2 [ci skip]. commit 599a6d9af5b17864de737933b95e26e72af016ff Author: Alan Garny Date: Tue Dec 16 17:13:59 2014 +0100 Slight update to the developer documentation [ci skip]. commit 6e3c973a08365150e85b1123736b050a7b4cd232 Author: Alan Garny Date: Mon Dec 15 10:29:44 2014 +0100 Travis-CI: re-enabled OS X. Indeed, brew now uses Qt 5.4, so we ought to be fine. commit b6b2afa1a99ce8bc76e3873834d7f8637d5fd7d7 Author: Alan Garny Date: Mon Dec 15 09:53:11 2014 +0100 Slight update to the user documentation [ci skip]. commit 36d0d461438d0799b069e8a48025e1be9ba57e67 Author: Alan Garny Date: Sat Dec 13 09:25:24 2014 +0100 Removed the support for Windows XP and Windows Vista (closes #520). commit a58eab687fca2d5622277f37fea483dd21b4b23f Author: Alan Garny Date: Fri Dec 12 23:56:54 2014 +0100 Removed the support for Windows XP and Windows Vista (closes #520). commit 662a057dc2845bf8f06798219d792437cf30335a Author: Alan Garny Date: Fri Dec 12 18:03:14 2014 +0100 Removed the support for Windows XP and Windows Vista (closes #520). commit 7f49dad4228c49b4b9f06efed9f705092e278605 Author: Alan Garny Date: Fri Dec 12 17:48:38 2014 +0100 Windows: slight revert change to our main CMakeLists.txt file so that we can build on Windows with no plugins. commit 75e98864d3a91f394d634358999eba44479c1fde Author: Alan Garny Date: Fri Dec 12 09:31:43 2014 +0100 Travis-CI: only support Qt 5.4 on Linux for now. Indeed, brew is still with Qt 5.3.2, which breaks our build… commit 1b402bbee6aec03e67eb869a7bfdf257ba9f70b7 Author: Alan Garny Date: Fri Dec 12 09:24:23 2014 +0100 Travis-CI: testing Qt 5.4 on OS X. Not sure that brew is up to date with Qt 5.4, so we shall see… commit bd75f66d096e6222077dddccc69df64f98033db9 Author: Alan Garny Date: Fri Dec 12 09:00:40 2014 +0100 Travis-CI: testing Qt 5.4 on Linux. The PPA for Qt 5.4 seems to be available, so time to try it. commit 8314e3a3d6b25dcd334aece7ca0c4bcd52423eb4 Author: Alan Garny Date: Thu Dec 11 19:09:49 2014 +0100 Reverting commit f2d5af4794056ab99a47cdb385835aafa820e7d1 (#514) [ci skip]. commit 9c7ab894a7d639dc5767f0873834bf4b2a3ab1d9 Author: Alan Garny Date: Thu Dec 11 19:08:28 2014 +0100 Some minor cleaning up [ci skip]. commit 1cb2e27f4368a3c2c591735e6fdd93fe2ee8efaa Author: Alan Garny Date: Thu Dec 11 16:11:55 2014 +0100 Some minor cleaning up [ci skip]. commit 1f3898be889b4b10bd58c56069cf81b5c0695210 Author: Alan Garny Date: Thu Dec 11 16:02:24 2014 +0100 Revert "Main executable: only try the CLI version (on Linux and OS X) if there is at least one argument [ci skip]." This reverts commit 36bfa0be7f92f84015d58f902b4fa616f9a6757f. Indeed, completely forgot that we can start OpenCOR with some filenames as arguments! commit 36bfa0be7f92f84015d58f902b4fa616f9a6757f Author: Alan Garny Date: Thu Dec 11 15:48:36 2014 +0100 Main executable: only try the CLI version (on Linux and OS X) if there is at least one argument [ci skip]. commit 57ce9c32a57d1fbbcf3c6ab5abb968dcf3b6ce99 Author: Alan Garny Date: Thu Dec 11 14:10:42 2014 +0100 Some minor cleaning up [ci skip]. commit f2d5af4794056ab99a47cdb385835aafa820e7d1 Author: Alan Garny Date: Thu Dec 11 14:03:09 2014 +0100 Qt54: some work towards using Qt WebEngine instead of Qt WebKit (#514) [ci skip]. commit 873d49239462ca7a7d1477584698eae87379f96d Author: Alan Garny Date: Thu Dec 11 13:56:16 2014 +0100 Some minor cleaning up [ci skip]. commit 4ad1d699246fb815a38151f3be3ff0beccdac770 Author: Alan Garny Date: Thu Dec 11 13:55:24 2014 +0100 Qt: some work towards upgrading to Qt 5.4 (#513) [ci skip]. This updates our TRAVIS-CI script, which shouldn’t be executed since it requires using Qt 5.4 while neither of them is currently available on our Linux and OS X targets. commit 83321e455c23189f5f5ba7f9827f370a6cc43d71 Author: Alan Garny Date: Thu Dec 11 13:35:00 2014 +0100 Qt: some work towards upgrading to Qt 5.4 (#513) [ci skip]. commit 80bdf0a43396441a4b5cd514f5ef72069d8828a7 Author: Alan Garny Date: Thu Dec 11 11:14:59 2014 +0100 Qt: some work towards upgrading to Qt 5.4 (#513) [ci skip]. commit 299b3d720135745b6225653aa80a0a900b5872b3 Author: Alan Garny Date: Thu Dec 11 00:09:37 2014 +0100 Some minor cleaning up [ci skip]. commit 0ef68d1ab59121781d3516c47b126b3ff9083d98 Author: Alan Garny Date: Wed Dec 10 19:53:32 2014 +0100 Qt: some work towards upgrading to Qt 5.4 (#513) [ci skip]. commit fcfdddd3b823a74dd4bc07efc9c7e2fb4087957f Author: Alan Garny Date: Wed Dec 10 18:26:58 2014 +0100 Qt54: fixed an issue with getting a warning about having to instantiate the QApplication object first (closes #517). The issue was with OpenCOR::removeGlobalInstances() being called after destroying guiApp. Yet, OpenCOR::removeGlobalInstances() is the first method we call in main() and everything’s fine there…?! commit 11074f53a2119df9960926e7537844617bb7e9ff Author: Alan Garny Date: Wed Dec 10 18:01:44 2014 +0100 Some minor cleaning up [ci skip]. commit 2d3c4813c240521c7330787255d72a8588d49095 Author: Alan Garny Date: Wed Dec 10 17:45:22 2014 +0100 Temporarily disable OS X build on Travis-CI. This is because we updated to Qt 5.4 and brew doesn’t yet have it. commit 9ea98c26086cc6b8011f568fad4d0fac4b069bac Author: Alan Garny Date: Wed Dec 10 17:06:01 2014 +0100 OpenSSL: updated Windows binaries to version 1.0.1j (closes #515). commit 1a4a5b1fe51fb7e9168af86afa6d314f5076bd10 Author: Alan Garny Date: Wed Dec 10 16:11:07 2014 +0100 Qt: some work towards upgrading to Qt 5.4 (#513) [ci skip]. commit b8ffb7734f12cf09e566e9927e92a02fed4abc80 Author: Alan Garny Date: Tue Dec 9 17:48:06 2014 +0100 CellML Annotation view: fixed an issue with the same cmeta:id being potentially used for two different CellML elements (closes #510). commit 38eea9bea438ef0b4a5136c6ffa283eda59ce756 Author: Alan Garny Date: Tue Dec 9 17:34:14 2014 +0100 Cleaned the CellML files in the OpenCOR repository (closes #512). commit f03b115f91d0dca8526e7cb371ae5d665e05a859 Author: Alan Garny Date: Tue Dec 9 17:19:19 2014 +0100 Some minor cleaning up [ci skip]. commit 7cbce2086251444716af25b35a1a2e158b80cb3f Author: Alan Garny Date: Tue Dec 9 16:44:50 2014 +0100 Some minor cleaning up [ci skip]. commit 24e574815a13246bfcc70bf267a7052113ca16d3 Author: Alan Garny Date: Tue Dec 9 16:40:24 2014 +0100 Some minor cleaning up [ci skip]. commit 5566e9aa1554be78629068aefc82e1cd28d13cf5 Author: Alan Garny Date: Tue Dec 9 15:58:20 2014 +0100 Some minor cleaning up [ci skip]. commit 913aabaab3fcfd372d1c164003b8121f6c282b7c Author: Alan Garny Date: Tue Dec 9 14:13:23 2014 +0100 Viewer widget: improved rendering of Greek symbols (closes #511) [ci skip]. commit 9a48451d459693fe4462886323a8fd8d26325eaa Author: Alan Garny Date: Tue Dec 9 14:07:37 2014 +0100 Viewer widget: improved rendering of Greek symbols (closes #511). commit a525db31b5e7c18229ee84a1ff4f5d2c4b675881 Author: Alan Garny Date: Tue Dec 9 14:06:17 2014 +0100 Some minor cleaning up [ci skip]. commit 8451fca4464a46131900b144d9acc8c917d5f3e2 Author: Alan Garny Date: Tue Dec 9 11:32:17 2014 +0100 Some minor cleaning up [ci skip]. commit 2063601bf909a89657710e4b4211b874933c58b2 Author: Alan Garny Date: Mon Dec 8 19:37:08 2014 +0100 Increased the number of cmeta:ids we can have in a CellML file [ci skip]. commit bffa6aed56cae2fb40da2274279591ee32c5216b Author: Alan Garny Date: Mon Dec 8 19:30:32 2014 +0100 Increased the number of cmeta:ids we can have in a CellML file [ci skip]. commit 5d9a3f48952358801d5f937a3e5def029c6115ab Author: Alan Garny Date: Mon Dec 8 19:25:25 2014 +0100 Slight improvement to the serialisation of a QDomDocument [ci skip]. commit a9188e940e525acf30c63dc250819e49c1caf442 Author: Alan Garny Date: Mon Dec 8 18:54:51 2014 +0100 Some minor cleaning up [ci skip]. commit e25695795b367c687a75097d8fbdffa21199f629 Author: Alan Garny Date: Mon Dec 8 18:11:26 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter (#494) [ci skip]. commit 98fed634349621767fa0b66fab60a0fab7a9c95e Author: Alan Garny Date: Mon Dec 8 18:09:08 2014 +0100 Some minor cleaning up [ci skip]. commit b3ff727d433fe82e42cac9112930c15ff349741b Author: Alan Garny Date: Mon Dec 8 17:33:01 2014 +0100 Editor list widget: add support for hint items and improve format of item text (closes #509). commit c4c03903c87538292161ab16038c67a9ce6564c6 Author: Alan Garny Date: Mon Dec 8 16:02:13 2014 +0100 Don'\''t check for new versions at startup when we are in debug mode [ci skip]. The idea is not to have OpenCOR hang up unnecessarily. commit c395467ca785bd96651974d1844e81bcf3b3c238 Author: Alan Garny Date: Mon Dec 8 09:02:41 2014 +0100 Developer documentation: updated the version of the Oxygen library [ci skip]. commit b32c83395d21403afe9b84340be4384dfa7c3603 Author: Alan Garny Date: Fri Dec 5 20:58:31 2014 +0100 Some minor cleaning up [ci skip]. commit 747a2bc3024357bd37989c9a637911b7276ab6b0 Author: Alan Garny Date: Fri Dec 5 20:46:14 2014 +0100 New snapshots. commit 765b1696f0e8fda6dcff1de9af3371a2bfa4b685 Author: Alan Garny Date: Fri Dec 5 20:45:31 2014 +0100 Checking for updates (closes #1). commit e786651592ec5ce2abb920417d4ddc094ee85e4c Author: Alan Garny Date: Fri Dec 5 18:13:39 2014 +0100 Checking for updates (closes #1). commit 4fe8705eed1823d6fcde9b3d437171db6f6ca254 Author: Alan Garny Date: Fri Dec 5 16:56:13 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit f86300ea8566215ed7765dd950d91d3034e96317 Author: Alan Garny Date: Fri Dec 5 16:16:20 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit d87ce2db2d4e4b729afaa15fd0e06b175a969c30 Author: Alan Garny Date: Fri Dec 5 16:04:31 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit eeecdad9a30c44b7889eda788ab254cb2752616e Author: Alan Garny Date: Fri Dec 5 15:00:38 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit 5ab5ee58696ebc0d85aef1b422f48307ab23e1d4 Author: Alan Garny Date: Fri Dec 5 11:20:47 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit 5cdd23abe819eb4692fe36e300c62720bad925d7 Author: Alan Garny Date: Fri Dec 5 11:02:56 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit 6108389eed1aa6c273e79bf2ea952e4435cf3144 Author: Alan Garny Date: Fri Dec 5 09:26:01 2014 +0100 Some minor cleaning up [ci skip]. commit bc21c81ea93327bd2dfe8341657acfd772d77ae0 Author: Alan Garny Date: Fri Dec 5 09:25:48 2014 +0100 Some work on checking for updates (#1) [ci skip]. commit 545f528077105973879ee7f395cd1168284e0923 Author: Alan Garny Date: Thu Dec 4 16:17:04 2014 +0100 Main executable: removed dependencies on some of the Core plugin features (closes #508). Windows and its importing/exporting of classes/functions… :( commit 8a7f85585a3d989570e60476dfc4eff1497869da Author: Alan Garny Date: Thu Dec 4 16:05:15 2014 +0100 Revert "Some minor cleaning up [ci skip]." This reverts commit 24ba526d3616a2c90f746c291fcb6848f69e6cdf. commit 24ba526d3616a2c90f746c291fcb6848f69e6cdf Author: Alan Garny Date: Thu Dec 4 15:52:17 2014 +0100 Some minor cleaning up [ci skip]. commit f2a47d9b4106bb3fc6c81d5161c84e0ab63714f7 Author: Alan Garny Date: Thu Dec 4 14:55:43 2014 +0100 Main executable: removed dependencies on some of the Core plugin features (closes #508). Oops, forgot to update the CLI version of OpenCOR on Windows… commit 0a373f0739bed941c73f09570e27a8384fedaecc Author: Alan Garny Date: Thu Dec 4 14:50:14 2014 +0100 Main executable: removed dependencies on some of the Core plugin features (closes #508). I initially wanted to keep common.cpp/.h for the main executable, but that didn’t work for the CLI version of OpenCOR on Windows since common.cpp/.h contains both CLI and GUI utilities. So, now, we have cliutils.cpp/.h and guiutils.cpp/.h rather than common.cpp/.h, which means that the former cliutils.cpp/.h and guiutils.cpp/.h are now corecliutils.cpp/.h and coreguiutils.cpp/.h. commit 39b8f72b87b6986d6eae18b3bf4e191fbd2cc403 Author: Alan Garny Date: Thu Dec 4 11:19:09 2014 +0100 Main executable: removed dependencies on some of the Core plugin features (closes #508). commit 06fce14f14f978b7d24c6192997dfb286ceb5412 Author: Alan Garny Date: Thu Dec 4 10:27:41 2014 +0100 Main executable: removed dependencies on some of the Core plugin features (closes #508). commit fcc7a1c6da3fcbc1ed96faee73448900d613f8ff Author: Alan Garny Date: Thu Dec 4 10:20:22 2014 +0100 Some work on check for updates feature (#1) [ci skip]. commit ee34047470368a086720bd54c24e4759b12357c5 Author: Alan Garny Date: Thu Dec 4 10:13:30 2014 +0100 Some work on check for updates feature (#1) [ci skip]. commit e4935e32b6f00e835dbc8bac2396dff5f43323cf Author: Alan Garny Date: Thu Dec 4 09:40:44 2014 +0100 CellML export to user-specified format: updated the Python format [ci skip]. See https://github.com/cellmlapi/cellml-api/pull/7. commit 35aea2cdf7be122add1f40e33af2e57805c1a734 Author: Alan Garny Date: Wed Dec 3 18:00:57 2014 +0100 Main executable: some work towards removing dependencies on some of the Core plugin features (#508) [ci skip]. commit c9bb47ce0576d4c9d710ca2834645f6a4ab347f4 Author: Alan Garny Date: Wed Dec 3 13:07:00 2014 +0100 Some minor cleaning up [ci skip]. commit d8b475a8980cc9f8793a1129e136e7bd9a337414 Author: Alan Garny Date: Wed Dec 3 11:33:15 2014 +0100 CellML Annotation view: handle possible SSL errors [ci skip]. commit cd77aa4aff2c4ed3e79a13da46e65ea89bb22413 Author: Alan Garny Date: Wed Dec 3 11:28:44 2014 +0100 Some minor cleaning up [ci skip]. commit a723a0794d6ed94cbf8ca932a9fd50b53abbc047 Author: Alan Garny Date: Wed Dec 3 10:37:22 2014 +0100 Documentation: slight update to the developer documentation [ci skip]. commit 297ff89d78768bbf93927ba53366df739bfd26ec Author: Alan Garny Date: Wed Dec 3 10:35:34 2014 +0100 CellML Annotation view: handle possible SSL errors [ci skip]. commit b59bb2848b62caa719a8aedd6075ccb5fd754a34 Author: Alan Garny Date: Tue Dec 2 19:22:26 2014 +0100 Some work on the update feature (#1) [ci skip]. commit 92df9c12489fbe9584cd031de525f6d74adeb685 Author: Alan Garny Date: Tue Dec 2 19:06:09 2014 +0100 Rely on JSON files to show what is new in OpenCOR (closes #506). commit b13b1d67be5c242e837f1781e1cbff0d4d914ded Author: Alan Garny Date: Tue Dec 2 15:27:17 2014 +0100 Some minor cleaning up [ci skip]. commit c17a278d61e47d7fd3430672b3c482dd3e9d334f Author: Alan Garny Date: Tue Dec 2 15:07:06 2014 +0100 Some minor cleaning up [ci skip]. commit 3a2d13be1661f207682564f9a926431e64943c6e Author: Alan Garny Date: Tue Dec 2 11:19:52 2014 +0100 Rely on JSON files to download the different versions/snapshots of OpenCOR (closes #505). Those are not pure JSON files anymore, but JavaScript files that contain some JSON. Indeed, to have pure JSON files prevented us from testing the download pages locally. The only way to test them was through a web server, which was exactly what we want to avoid (see issue #490). The current solution still allows us to do what we need for issue #1, so we are fine. It’s just not as ‘neat’… commit 4afd5cdfeb1d48bc7ae598925eae5f074be1b145 Author: Alan Garny Date: Tue Dec 2 09:46:35 2014 +0100 Some minor cleaning up [ci skip]. commit afa175a0c7f5af56bcdfda181e2d6a7846103692 Author: Alan Garny Date: Mon Dec 1 18:56:11 2014 +0100 Removed some Qt libraries, which are not needed anymore by plugins on OS X. Probably the result of some Qt update, on which I didn’t pick up… commit 6e055f013fe2e66ed6ff054f935ac8cfb0aeb5da Author: Alan Garny Date: Mon Dec 1 17:22:05 2014 +0100 Rely on JSON files to download the different versions/snapshots of OpenCOR (closes #505). commit 9e4e0c34780b74cafd3ffe90b25d08ea4a8d6d19 Author: Alan Garny Date: Mon Dec 1 14:05:13 2014 +0100 Revert "Some minor cleaning up [ci skip]." This reverts commit 5c22c16917e7b9d7c6885ccba09c6443043d2c1f. commit 5c22c16917e7b9d7c6885ccba09c6443043d2c1f Author: Alan Garny Date: Mon Dec 1 11:04:22 2014 +0100 Some minor cleaning up [ci skip]. commit 76bdc1a4d6346a160a46c0ef7cbe750b80c435a7 Author: Alan Garny Date: Sat Nov 29 18:39:41 2014 +0100 CellML Annotation view: improve the setting of the modified state of a CellML file (closes #504). commit 546149ef941e6400932c78f3320f9e87b5d30b69 Author: Alan Garny Date: Sat Nov 29 18:33:26 2014 +0100 Some minor cleaning up [ci skip]. commit a4719d15473da35c1adca183ac2d5440e47e44b4 Author: Alan Garny Date: Fri Nov 28 18:42:29 2014 +0100 CellML Annotation view: improve the setting of the modified state of a CellML file (closes #504). commit 7184278fcdb0bc131f84e8aa4c8f805935b98c02 Author: Alan Garny Date: Fri Nov 28 17:00:54 2014 +0100 Raw CellML view: add the "CellML Validation" menu to the editor'\''s context menu (closes #503). commit 2bf83780f9272d84db19a52605336cfce9b122dc Author: Alan Garny Date: Fri Nov 28 16:58:38 2014 +0100 Some minor cleaning up [ci skip]. commit f2b5fa05626a97454da3da606181e721754b5795 Author: Alan Garny Date: Fri Nov 28 14:49:07 2014 +0100 Some minor cleaning up [ci skip]. commit f1dcf50ec128c213c73ed3fc90f8bbe233d725c6 Author: Alan Garny Date: Fri Nov 28 14:16:53 2014 +0100 Some minor cleaning up [ci skip]. commit 6593f982cb91ab9e2607812bb11d47af0e609fb8 Author: Alan Garny Date: Thu Nov 27 19:12:27 2014 +0100 New snapshots. commit d3177099a58791a0fde0ee96e9d7c86e44658d1b Author: Alan Garny Date: Thu Nov 27 19:02:29 2014 +0100 Documentation: disabled references to the Pretty CellML view [ci skip]. This is clearly temporary until we actually ship OpenCOR with the Pretty CellML view, which we don’t for the moment in our snapshots. commit 4f46a1c7a6e861c613f81792fcb1e8c0de37b7ad Author: Alan Garny Date: Thu Nov 27 18:47:26 2014 +0100 User documentation: slight update to the what'\''s new section [ci skip]. commit 55bf2714020f32d6929b3555ddd132bab04e5067 Author: Alan Garny Date: Thu Nov 27 18:45:42 2014 +0100 Raw CellML view: fixed an issue with widgets getting resized upon reloading a file when the view is not active (closes #501). This also fixes some other GUI-related issues, which I forgot to document… commit ceec0458cbcb89516621db0989b88b6835743f7d Author: Alan Garny Date: Thu Nov 27 16:18:54 2014 +0100 Raw CellML view: some work on fixing issue with widgets getting resized upon reloading a file when the view is not active (#501) [ci skip]. commit db116305b28ec5090935ad4c20c0e95cfa92ca31 Author: Alan Garny Date: Wed Nov 26 18:36:24 2014 +0100 CellML Annotation view: fixed a crash that occurs after adding annotation, saving, removing the annotation and resaving (closes #495). Argh, had forgotten to update one of our sample plugins! commit 64c8efcb94c56247d26aacec3f136846446c032d Author: Alan Garny Date: Wed Nov 26 18:13:28 2014 +0100 CellML Annotation view: fixed a crash that occurs after adding annotation, saving, removing the annotation and resaving (closes #495). commit 9f495ca192215c337c0128527f6bd053c96490f3 Author: Alan Garny Date: Wed Nov 26 16:26:55 2014 +0100 CellML Annotation view: some work towards fixing a crash after adding annotation, saving, removing the annotation and resaving (#495) [ci skip]. commit 691417b2cb9838af7a85bc6eae82e6a3d5161ef6 Author: Alan Garny Date: Wed Nov 26 15:34:29 2014 +0100 Some minor cleaning up. What is that “considered modified” status in the File class? Some quick tests seem to indicate that it is not necessary?… commit f126f707f1411e4250513964474cc33a71c33300 Author: Alan Garny Date: Wed Nov 26 15:05:58 2014 +0100 Some minor cleaning up [ci skip]. commit d66131bbff4d88cbecc3161d626d40822475dc54 Author: Alan Garny Date: Wed Nov 26 10:09:57 2014 +0100 Some minor cleaning up [ci skip]. commit d50783a3efc7a8b5aac741dcc0c590c87f4f310c Author: Alan Garny Date: Wed Nov 26 09:49:25 2014 +0100 Developer documentation: updated the version of the Oxygen library [ci skip]. commit 6f7e446322343e03af3e1bce854e7fb54471c4b9 Author: Alan Garny Date: Tue Nov 25 17:45:55 2014 +0100 Some minor cleaning up [ci skip]. commit b5238afd448010d87acfba48b59b47a36316ef40 Merge: a85fd47e9 3ae190a48 Author: Alan Garny Date: Tue Nov 25 14:00:39 2014 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit a85fd47e971e86fc06515519efbd8df5e0623ce7 Author: Alan Garny Date: Tue Nov 25 13:59:56 2014 +0100 Windows build: added the Xml library to the CLI version of OpenCOR [ci skip]. This is required for qDomDocumentToString (in the CLI utilities). commit 3ae190a4841c65ed6f7d54630772eeceefbb19b8 Author: Alan Garny Date: Tue Nov 25 13:45:15 2014 +0100 Updated the CellML files we ship with OpenCOR [ci skip]. This is a result of our improved serialisation of CellML files (see #497). commit 9df325657a6202b5126aaa801dcf5f487dfea9d0 Author: Alan Garny Date: Tue Nov 25 13:42:49 2014 +0100 CellML support: beautify the serialisation of a CellML file (closes #497). The difference with the previous solution is that now we do it the ‘proper’ way, i.e. we rely on QDomDocument::save() as much as possible. commit 5ab2384e390a71389e0d30a2f4cb73ba592097eb Author: Alan Garny Date: Mon Nov 24 17:06:21 2014 +0100 Updated the CellML files we ship with OpenCOR [ci skip]. This is a result of our improved serialisation of CellML files (see #497). commit aca16f2a654908733cfcda46649052b937c7322c Author: Alan Garny Date: Mon Nov 24 17:05:33 2014 +0100 CellML support: beautify the serialisation of a CellML file (closes #497). The difference with the previous solution is that now we ensure the order of the attributes. When it comes to XML, it doesn’t matter whether an attribute comes before another or not. However, to have attributes sorted makes it for easier comparison, which can be quite handy at times. commit 9d6ca318e45b2b5e86dd19daf70f87fd0f5dfc22 Author: Alan Garny Date: Mon Nov 24 16:29:16 2014 +0100 CellML Annotation view: prevent the annotation of a malformed CellML file (closes #499). commit 06948b329d50d7be9edea126cf87812fa9586b4b Author: Alan Garny Date: Mon Nov 24 14:52:18 2014 +0100 Slight improvement [ci skip]. commit d070f169ed58bd1b63b0578036e25ec5129030e4 Author: Alan Garny Date: Mon Nov 24 13:33:31 2014 +0100 CellML support: remove a model'\''s RDF node, should there be no annotations (closes #498). commit 5abc1ae2105be7ba05ffa1254e4b3dc58e0713f1 Author: Alan Garny Date: Mon Nov 24 11:46:10 2014 +0100 CellML support: remove the XML base value from the serialisation of a CellML file (closes #496). commit 47f2e147024ddb3d41a6919a1ab1c807bed4efec Author: Alan Garny Date: Mon Nov 24 11:43:34 2014 +0100 CellML support: beautify the serialisation of a CellML file (closes #497). commit 0d15929c3a323a192d2b55e983f13b0573f4a798 Author: Alan Garny Date: Mon Nov 24 11:21:07 2014 +0100 Some minor cleaning up [ci skip]. commit f587f5730758871ad5e3c0ad6bd87f0b4b9b0452 Author: Alan Garny Date: Sat Nov 22 18:50:09 2014 +0100 Some minor cleaning up [ci skip]. commit 1a1798334f1d0491805209ddf7beb29ec35f25f0 Author: Alan Garny Date: Thu Nov 20 17:57:06 2014 +0100 Some minor cleaning up [ci skip]. commit 03437035a8bb239f47d1ce18cf3e9d40af1027fd Author: Alan Garny Date: Tue Nov 18 18:42:11 2014 +0100 Some minor cleaning up [ci skip]. commit b02407f299f9108cc914fa711fa49b7ab9ad98d1 Author: Alan Garny Date: Tue Nov 18 17:53:01 2014 +0100 Some minor cleaning up [ci skip]. commit 24107a41ca28256372c5772a300bc2a2c2846da9 Author: Alan Garny Date: Tue Nov 18 15:25:13 2014 +0100 Pretty CellML view: make sure that an issue, if any, is properly shown (#17) [ci skip]. commit 3088112277f620633fbb77ab99b933444d16e7d5 Author: Alan Garny Date: Tue Nov 18 15:15:37 2014 +0100 Some minor cleaning up [ci skip]. commit ae27acfb45f5b3cf15f4717a29a226dd2d3a801b Author: Alan Garny Date: Tue Nov 18 15:00:35 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter (#494) [ci skip]. commit 8edf20cd1270f825a609474cca07136ef7da45bc Author: Alan Garny Date: Tue Nov 18 14:59:13 2014 +0100 Some minor cleaning up [ci skip]. commit 6060bee0b0630245e26eb4dbd647fca8f4f90590 Author: Alan Garny Date: Mon Nov 17 20:51:45 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter (#494) [ci skip]. commit 6488d63989573d058f5690c87a182cf6f77c9c3e Author: Alan Garny Date: Mon Nov 17 20:42:44 2014 +0100 Some minor cleaning up [ci skip]. commit 77c0e15e92b35d43c7253a1496d1b1684b85e2e2 Author: Alan Garny Date: Mon Nov 17 20:42:03 2014 +0100 Pretty CellML view: check whether an editor is useable (#17) [ci skip]. This is useful in case we want to open an invalid CellML file using the Pretty CellML view. commit 3f4433c5df04df4808570a29453320862653ff45 Author: Alan Garny Date: Mon Nov 17 18:46:51 2014 +0100 Some minor cleaning up [ci skip]. commit f84e57198e53146eb52694931ce5f21467b7c2f4 Author: Alan Garny Date: Mon Nov 17 17:30:31 2014 +0100 Pretty CellML view: some minor work on CellML validation (#17) [ci skip]. commit 40f1fc107fda5e14fb4fe92f7dbf30dbcca6516b Author: Alan Garny Date: Mon Nov 17 17:25:58 2014 +0100 Some minor cleaning up [ci skip]. commit 93dd06c28f0d0c7dde19f979636747c2f9db417d Author: Alan Garny Date: Mon Nov 17 17:09:07 2014 +0100 Some minor cleaning up [ci skip]. commit f9701bb66b35da7027336bda041b1714e019a3db Author: Alan Garny Date: Mon Nov 17 16:46:37 2014 +0100 Pretty CellML view: updated the way we detect the contents of an editor has been modified (#17) [ci skip]. commit 83af1350a8bff644a9cef1f8a73c5ed45e2dedcf Author: Alan Garny Date: Mon Nov 17 15:23:12 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter (#494) [ci skip]. commit 766c078b9fa44dbc8b520fe3a67c1f8f2ba4ed7c Author: Alan Garny Date: Thu Nov 13 16:29:57 2014 +0100 Single cell view: prevent the parameters section from being collapsed (closes #493). commit db6e55f196043c208837a6076d6c5c0efb5ea482 Author: Alan Garny Date: Wed Nov 12 16:14:34 2014 +0100 Single cell view: prevent the parameters section from being collapsed (closes #493). commit 3a8f8ccbad821112d7f28ca1b32fbe3c1457600c Author: Alan Garny Date: Wed Nov 12 12:25:44 2014 +0100 Slight update to the downloads page to suggest using the latest snapshot [ci skip]. commit 4a5a035be3891ad7e8bf5b1429213b396483fa48 Author: Alan Garny Date: Tue Nov 4 15:00:31 2014 +0100 Solver plugins: slight improvement to their description [ci skip]. commit 53529da00eb0fb6c3ce7457bfa53312d8675f93a Author: Alan Garny Date: Tue Nov 4 14:12:11 2014 +0100 Documentation: some minor cleaning up [ci skip]. commit 3773fd443c5245aef566b06d0ec53664ec2799c0 Author: Alan Garny Date: Thu Oct 30 13:59:16 2014 +0100 QtSingleApplication: updates the copyright information [ci skip]. commit 8b1c607c20258109d5a6317b204312bbc8dbae04 Author: Alan Garny Date: Thu Oct 30 13:58:59 2014 +0100 Some minor cleaning up of various Web addresses [ci skip]. Among other things, replaced certain instances of qt-project.org with www.qt.io. commit e7cda34c594e82b64c5d769dd756f5cca72341dc Author: Alan Garny Date: Wed Oct 29 15:10:16 2014 +0100 Documentation: update some of our screenshots (closes #491) [ci skip]. commit e1cf198e3766f9085217501d688dbbcb43151ad7 Author: Alan Garny Date: Tue Oct 28 16:41:49 2014 +0100 Slight improvements to the shortcuts for showing/hiding docked windows. commit 60b4c3c01bd00c59a4ded4b2500d3c0c28187284 Author: Alan Garny Date: Mon Oct 27 19:52:15 2014 +0100 Some minor cleaning up [ci skip]. commit 941a4725d7517c01eafece6d0391c8de4f51fe94 Author: Alan Garny Date: Mon Oct 27 15:58:51 2014 +0100 Some minor cleaning up [ci skip]. commit 840108cf47cef17f54eba949ea9130b947c37f2e Author: Alan Garny Date: Mon Oct 27 15:41:48 2014 +0100 Some minor cleaning up [ci skip]. commit e3af42eb5f8c60869eeaae727aeb92decd0ac2ac Author: Alan Garny Date: Mon Oct 27 15:22:14 2014 +0100 Documentation: update some of our screenshots (closes #491) [ci skip]. commit 01e27007ad0d4f42dc6904425da2d6f8bcd67033 Author: Alan Garny Date: Mon Oct 27 13:34:00 2014 +0100 Documentation: slight update to our user documentation [ci skip]. commit 5446fd15d2e42b56e9cf4ab2244b529bbc730957 Author: Alan Garny Date: Mon Oct 27 12:53:58 2014 +0100 Documentation: update some of our screenshots (closes #491). commit 33ba2848f595ae7663ebd3269645b66dc21d7c04 Author: Alan Garny Date: Thu Oct 23 18:19:44 2014 +0200 Documentation: slight updates to our developer documentation [ci skip]. commit 4dbf1ab6a0bfd02df4fbb148fe4333cd00a4d3dc Author: Alan Garny Date: Wed Oct 22 17:45:30 2014 +0200 Slight reorganisation of our file structure. commit 45e8679404cbf842310554c7d23bb97d118e44a7 Author: Alan Garny Date: Wed Oct 22 15:32:16 2014 +0200 Downloads pages: slight update to our previous snapshots page [ci skip]. commit 1174c4baf2ca15861d59d5ee7f8f8dee6f835899 Author: Alan Garny Date: Tue Oct 21 19:08:08 2014 +0200 Downloads pages: don'\''t rely on PHP anymore (closes #490) [ci skip]. We don’t provide the size of the downloads anymore. Instead, if we the script is to be run off the website, then we retrieve the file sizes using a PHP script that we execute from our JavaScript file (!!). commit 5c0415f0c924b4dd0b74ada10b3d1fb97adf8c3e Author: Alan Garny Date: Tue Oct 21 11:15:04 2014 +0200 Developer documentation: slight update following the release of Xcode 6.1 [ci skip]. commit c68553471827fbc83e7436d739ed0e0dcc120924 Author: Alan Garny Date: Mon Oct 20 19:52:35 2014 +0200 Downloads pages: don'\''t rely on PHP anymore (closes #490) [ci skip]. commit 18a74be02e96b188908a04f67b5c31f0efa2c863 Author: Alan Garny Date: Mon Oct 20 19:48:03 2014 +0200 Downloads pages: don'\''t rely on PHP anymore (closes #490). commit e9fc3914b7e31fd0c92f77c7c89722130b94b6e4 Author: Alan Garny Date: Sun Oct 19 19:39:46 2014 +0200 Make it optional to package with PackageMaker on OS X (closes #488) [ci skip]. commit 0ea47cfa0a93791aa623c1aef0419f75cb59ff88 Author: Alan Garny Date: Sun Oct 19 19:15:10 2014 +0200 Make it optional to package with PackageMaker on OS X (closes #488). commit bf3ee67f1bd14ab98a304c59a31b331e855ddb09 Merge: 46da3c46a dae3684e0 Author: Alan Garny Date: Sat Oct 18 15:56:02 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 46da3c46a870a84d9059e2e9ffa536c196449bbf Author: Alan Garny Date: Sat Oct 18 15:55:35 2014 +0200 Make it optional to package with NSIS on Windows (closes #487). commit dae3684e05c34bf903224f73dac6dc51822a7064 Author: Alan Garny Date: Fri Oct 17 17:35:12 2014 +0200 Cleaned up some code that '\''fixed'\'' an issue with the full screen mode on OS X [ci skip]. This is related to https://bugreports.qt-project.org/browse/QTBUG-30139. Our ‘fix’ used to work, except that we would get a message that reads something like: 2013-05-17 14:52:25.991 fullscreen[40864:707] not in fullscreen state Now, everything seems to be working fine… commit 9b476dcd23b4bc2be2bf2092369a4574506f55c6 Author: Alan Garny Date: Fri Oct 17 11:33:17 2014 +0200 New snapshots. commit a2612c101b4593c302376d6e8daba6351e3eebff Author: Alan Garny Date: Fri Oct 17 11:28:25 2014 +0200 Documentation: some minor cleaning up [ci skip]. commit 193c896cdcfaf15a88d0b15a733faf51779e38ba Author: Alan Garny Date: Fri Oct 17 11:08:16 2014 +0200 Added support for OS X 10.10 (Yosemite) (closes #486). commit b77e4dc902b206127408fab265aa66904d9f337b Author: Alan Garny Date: Thu Oct 16 14:22:07 2014 +0200 Documentation: updated the title of the user/developer documentation home pages [ci skip]. commit 3c2046df3d9ed6d73185befc3ff4156dedb8d9d6 Author: Alan Garny Date: Wed Oct 15 16:58:55 2014 +0200 Some minor cleaning up [ci skip]. commit a8815f9ee375c537839917befa6b600487f601c9 Author: Alan Garny Date: Wed Oct 15 16:49:54 2014 +0200 OpenCOR logo: updated the image versions of our logo [ci skip]. commit d91b1c7590b2c53e01b56f3e9b01e85668f9dfa1 Author: Alan Garny Date: Wed Oct 15 14:16:04 2014 +0200 OpenCOR logo: some major cleaning up of our SVG file [ci skip]. commit d538ec6a568be0cce971ba071b732aa406e1253b Author: Alan Garny Date: Wed Oct 15 11:16:31 2014 +0200 OpenCOR logo: some minor cleaning up of our SVG file [ci skip]. commit f075a37f7549bd0c5e2de4f369b4f87e50458bf7 Author: Alan Garny Date: Tue Oct 14 19:19:11 2014 +0200 OpenCOR logo: updated the icon version of our logo. commit 327d2b1d849d73f22e6ebdf737ee28287ccb10d3 Author: Alan Garny Date: Tue Oct 14 17:34:33 2014 +0200 OpenCOR logo: slightly shifted its contents to the left and made the splash screen image and logo itself transparent. No work on the icon version has been done yet. commit 4f65a1f18c428fd041bcfcc839bfcacc10887e99 Author: Alan Garny Date: Tue Oct 14 13:02:27 2014 +0200 Slight update to the developer documentation following the release of Qt Creator 3.2.2 [ci skip]. commit 8b457908ba4eff8107d221e9770cd767370b14b9 Author: Alan Garny Date: Tue Oct 14 10:48:18 2014 +0200 New snapshots. commit 0c16b170dcb5d8ebabd9836c95a2569202d6273e Author: Alan Garny Date: Tue Oct 14 10:20:46 2014 +0200 64-bit Windows: have the installer use the correct default installation directory (closes #484). commit 29e64d1a87906db8988ade13f1c2f1075c9b3acc Author: Alan Garny Date: Mon Oct 13 16:52:21 2014 +0200 OpenCOR logo: use the Physiome theme (closes #483) [ci skip]. commit 010b63dd1fa28d8d6c158222e847ea94b354ede0 Author: Alan Garny Date: Mon Oct 13 16:48:11 2014 +0200 OpenCOR logo: use the Physiome theme (closes #483). commit 73d2762b5789d694c4100595b5fe1e064a0f5f8b Author: Alan Garny Date: Mon Oct 13 16:14:11 2014 +0200 OpenCOR logo: some work towards using the Physiome theme (#483) [ci skip]. commit b210586198f0779f73137cb11f9b4665f9bbc2f4 Author: Alan Garny Date: Mon Oct 13 14:33:50 2014 +0200 OpenCOR logo: some work towards using the Physiome theme (#483) [ci skip]. commit d4de42a948507419cb0c3ce28dfe0378b301b344 Author: Alan Garny Date: Tue Oct 7 11:24:55 2014 +0200 Some minor cleaning up [ci skip]. commit e08298ba61076912e7b83bc29d1ed3e5bee2c3d5 Author: Alan Garny Date: Fri Oct 3 17:29:52 2014 +0200 Qwt: done upgrading to version 6.1.1 from version 6.1.0 (closes #482). commit 2cf3e7f9bdb70997ffdaae5ddde3f8ac63cb52d8 Author: Alan Garny Date: Fri Oct 3 16:48:49 2014 +0200 Qwt: some work on upgrading to version 6.1.1 from version 6.1.0 (#482) [ci skip]. commit 22c775a9d1042cfc152ec308ccb54b6316c382d7 Author: Alan Garny Date: Thu Oct 2 13:39:30 2014 +0200 CellML support: some slight improvements to the CellmlFileRdfTriples class [ci skip]. 1) We renamed CellmlFileRdfTriples:: contains() and CellmlFileRdfTriples::recursiveContains() to CellmlFileRdfTriples::associatedWith() and CellmlFileRdfTriples::recursiveAssociatedWith(), respectively. 2) Some minor improvements to CellmlFileRdfTriples::recursiveAssociatedWith(). commit 5558c19a06d1650661dabb0c47048621fcdc29d3 Author: Alan Garny Date: Thu Oct 2 13:37:37 2014 +0200 CellML support: keep track of an RDF triple'\''s element value as a string [ci skip]. We rely a lot on an RDF triple’s element’s value as a string, so rather than generate that value every time, we keep track of it once and for all. commit 453c83d78f5555836fd4f2f7d222b2eae8a1d215 Author: Alan Garny Date: Thu Oct 2 11:34:27 2014 +0200 Some minor cleaning up [ci skip]. commit 7ff384a834681b7c329c6c0d89892814942a4a8b Author: Alan Garny Date: Thu Oct 2 10:32:29 2014 +0200 Plugins window: slight improvement to the update of the selected state of all our unselectable plugins [ci skip]. commit ea05ab33d446953dd72992721eb53d38a158e5d7 Author: Alan Garny Date: Thu Oct 2 10:29:31 2014 +0200 CellML Annotation view: minor update to the plugin'\''s dependencies [ci skip]. commit 88e570dcb12cbe992870774f515093114ca3c6bc Author: Alan Garny Date: Wed Oct 1 19:01:36 2014 +0200 Some minor cleaning up [ci skip]. commit a7e9df7d197772570ebd9cf2d308a49f4041ad9c Author: Alan Garny Date: Wed Oct 1 18:47:50 2014 +0200 New snapshots. commit faafd01ccefa3a039af449b116161f9031e95cab Author: Alan Garny Date: Wed Oct 1 18:20:08 2014 +0200 CellML support: some work on improving CellmlFile::rdfTriple() (#481) [ci skip]. commit 08d5f37ca991efb815b13710ecda313d1e01d180 Author: Alan Garny Date: Wed Oct 1 16:30:25 2014 +0200 Updated the user documentation [ci skip]. commit 54eb09a324303348670c092368b78da30434d915 Author: Alan Garny Date: Wed Oct 1 16:23:52 2014 +0200 CellML Annotation view: prevent the addition of an ontological term in a read-only file (closes #480). commit 54e91d49dc1d9d867cc90097d787b2fcb8f23da8 Author: Alan Garny Date: Wed Oct 1 15:22:35 2014 +0200 File manager: improved the way it lets people know about a file'\''s permissions having changed [ci skip]. commit 96ea93a233ca3833375aafb84a54bec3a33c82ce Author: Alan Garny Date: Wed Oct 1 14:52:38 2014 +0200 Travis-CI: use CMake 3.0.2 on Linux and don'\''t install CMake from Brew on OS X anymore. commit 6c93832770dc103b894a1801cb61488a33bcbe9b Author: Alan Garny Date: Wed Oct 1 14:44:42 2014 +0200 Travis-CI: use CMake 3.0.2 on Linux and don'\''t install CMake from Brew on OS X anymore. Travis-CI now uses version 10.9.5 of OS X and it would seem that they already have CMake 3.0.2 installed. commit 734d21bdb4aeca3c7540bf473579b3d55e24ecb2 Author: Alan Garny Date: Wed Oct 1 14:21:11 2014 +0200 Some minor cleaning up. commit 6f358bdc2d75b79250897942900c7e6aba362f9a Author: Alan Garny Date: Wed Oct 1 13:19:23 2014 +0200 Qt 5: cleaned up some code as a result of Qt 5 having been updated (#138) [ci skip]. commit 6132f99a0be065e1c1e169cd6b210c1fa5c53a44 Author: Alan Garny Date: Tue Sep 30 17:18:17 2014 +0200 Removed some code, which is not at all used [ci skip]. commit fbf72e2cea97603c84f064474eeea48eb636a6f7 Author: Alan Garny Date: Tue Sep 30 16:51:55 2014 +0200 Slight improvement to Core::UserMessageWidget [ci skip]. commit 91039ee1d0ed2792f3658317d1fc5181bdca0d02 Author: Alan Garny Date: Tue Sep 30 14:54:20 2014 +0200 Some minor cleaning up [ci skip]. commit 243600c90d5bbc55bc48750092d0fd8288e6c7c2 Author: Alan Garny Date: Tue Sep 30 13:52:12 2014 +0200 Some minor cleaning up [ci skip]. commit c22be7ebb7ca690f68943401e499cfc649b535e7 Author: Alan Garny Date: Tue Sep 30 11:47:20 2014 +0200 Removed the different Core::newLabel() methods (closes #479). commit 16c256c1aabda3c5574581afd811976b7da42a98 Merge: 7f5a4f3c5 4694bc0a8 Author: Alan Garny Date: Tue Sep 30 11:09:16 2014 +0200 Merge pull request #478 from opencor/issue470 CellML Annotation view: list ontological terms using a web page of sorts (#470). commit 4694bc0a8c885dc527a739764b673cccf9074f59 Author: Alan Garny Date: Tue Sep 30 10:45:40 2014 +0200 CellML Annotation view: done with listing ontological terms using a web view of sorts (closes #470). commit bc9a0eab9f2f37080ae166cf9f8b1001d2fadac7 Author: Alan Garny Date: Tue Sep 30 10:45:06 2014 +0200 Slight updates to our user documentation. commit 2cc947bca979dd436cf6e64b070ccb3083d2c3da Author: Alan Garny Date: Mon Sep 29 19:04:02 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts (#470). commit bea02e060c0056c32a59aae02a444bd731ecc000 Author: Alan Garny Date: Mon Sep 29 17:00:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts (#470). commit bed7349ebe52fc938543d65b09fb0589f62d3a27 Author: Alan Garny Date: Mon Sep 29 16:03:37 2014 +0200 Some minor cleaning up. commit 699e7e3ffd3d5b8134056464ecd86e39b3ce11eb Author: Alan Garny Date: Mon Sep 29 15:59:45 2014 +0200 Some minor cleaning up. commit 9201ad7a5ca6d33104fd684680d0231a367a3fc0 Author: Alan Garny Date: Mon Sep 29 15:53:51 2014 +0200 Some minor cleaning up. commit 107837a6ae0656e75c532073c872311981ba2962 Author: Alan Garny Date: Mon Sep 29 15:06:49 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts (#470). commit 78e76ab66c992ad77ede1d6dc14e6a1501f9a033 Author: Alan Garny Date: Sun Sep 28 12:12:56 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit b1d28467761ca2411b7ff77a3fe74e0f1f60aeb6 Author: Alan Garny Date: Sun Sep 28 11:01:23 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit a468a7c48c88c1a13f9f0809ca07dceba4cceaa8 Author: Alan Garny Date: Sat Sep 27 17:46:49 2014 +0200 Added a couple of static functions to CellmlFileRdfTriple. They are modelQualifier() and bioQualifier(), and they can be used to retrieve a model/bio(logy) qualifier from a string. commit cb33f8f3351be78e5c0cb0038721a1b4b32fd0c3 Author: Alan Garny Date: Fri Sep 26 15:07:32 2014 +0200 Some minor cleaning up of our CellML support classes. Also added some CellMLFile::removeRdfTriple() methods (to make things easier with #470). commit b5779da089728173ef5018d785546fe4fe098d54 Author: Alan Garny Date: Fri Sep 26 14:17:51 2014 +0200 Some minor cleaning up. commit 4b965a906ab75846a82f24744a6b4400050438cc Author: Alan Garny Date: Fri Sep 26 13:13:03 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 8558d52b5e6d4294e644ccdd97f084d7656a4081 Author: Alan Garny Date: Thu Sep 25 17:34:49 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 544919a032cdb30e96f6b5d89efc96be143a6596 Author: Alan Garny Date: Thu Sep 25 14:20:11 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 5fcdc7de8e68019627919fade8a5ca20612e5085 Author: Alan Garny Date: Thu Sep 25 10:42:36 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit cf7a21e1e5ad99200c5f12e3cc3a1a9ac7c9c65d Author: Alan Garny Date: Thu Sep 25 10:17:24 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit e9e977154126779d0f61f7f4791b92b8db2c0111 Author: Alan Garny Date: Wed Sep 24 17:35:44 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 25c4d8a810b076911beda75ebcd91e0b6cc48626 Author: Alan Garny Date: Wed Sep 24 17:24:55 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 3e4617328a8f5416450fdfaa422b114816089d4c Author: Alan Garny Date: Wed Sep 24 17:13:58 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 63bc55be637b01c1d9f033102cfd14312dd9646a Author: Alan Garny Date: Wed Sep 24 16:11:48 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 73d545f9e94dc8abe6cdc16ecc5b03a2d19f2d44 Author: Alan Garny Date: Wed Sep 24 13:23:44 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit b0e47fc2b23b6fe2caa2f8b99dfb5e10c88c6de6 Author: Alan Garny Date: Wed Sep 24 11:37:47 2014 +0200 Some minor cleaning up. commit 01c4de95d9af45c4d3e173c178f5a3540a4af194 Author: Alan Garny Date: Tue Sep 23 17:51:59 2014 +0200 Slight improvement to Core::UserMessageWidget. commit 5087a9b62e9de0e45ca1eb039b7999f7676e3ac8 Author: Alan Garny Date: Tue Sep 23 17:47:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 01d98cfeaec4cdb9c1d789c37d7967355b6dcead Author: Alan Garny Date: Tue Sep 23 17:40:22 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit daba92714b3ddf420c656c41721073044a45c07c Author: Alan Garny Date: Tue Sep 23 16:30:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit f4e9ade66d12625de9f4b96f8c7ec20f900a14a8 Author: Alan Garny Date: Tue Sep 23 16:09:43 2014 +0200 Some minor cleaning up of our CellmlFileRuntime class. commit e874c68873c9f58bbb60237d1413c60c2828be4e Author: Alan Garny Date: Tue Sep 23 15:54:16 2014 +0200 Some minor cleaning up of our connection statements. commit 464914066e3db73ee68c8722cb1b9fee15f1e899 Author: Alan Garny Date: Tue Sep 23 14:41:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit d5577f1eb9fcf76bab6d13d889b3741062fd9a97 Author: Alan Garny Date: Tue Sep 23 10:27:10 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 0dfb63c6935ab557e1c3c2281652917a3244954f Author: Alan Garny Date: Tue Sep 23 09:19:06 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit be0a506f66765923e8b4ab41884285bc74d5795d Merge: 7e9ccfaee 7f5a4f3c5 Author: Alan Garny Date: Mon Sep 22 18:50:11 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470 commit 7e9ccfaeee98b9ca0ca7eb05a5057235fa69ab75 Author: Alan Garny Date: Mon Sep 22 18:48:33 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 54cbbe43fe23c467e83a817fde8f4f41e457f862 Author: Alan Garny Date: Mon Sep 22 17:08:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 0a45f146b07f2b51a170a6c53f22f813c4fd3f67 Author: Alan Garny Date: Mon Sep 22 16:13:45 2014 +0200 Some cleaning up of our main common.css file. commit 7f5a4f3c507599246f441bc318186958ee712696 Author: Alan Garny Date: Mon Sep 22 14:43:06 2014 +0200 Qwt and SUNDIALS plugins: updated the binaries (closes #476). commit f23528522309bed814742459ef9f297363b87ec6 Author: Alan Garny Date: Mon Sep 22 11:16:27 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit da2b684f63e45bd47de336a078b08b6b94273ad0 Author: Alan Garny Date: Mon Sep 22 10:34:40 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 7daf6836e1a2ba3aa7c16c461142947520044c41 Author: Alan Garny Date: Mon Sep 22 10:33:39 2014 +0200 Fixed a regression issue with HTML anchors that don'\''t accept hovering. commit 93f96c85e61d684db88ded50fa0152f21d37f609 Author: Alan Garny Date: Mon Sep 22 10:32:53 2014 +0200 Some cleaning up of main common.css file. commit 78cbfffc8825292bbec244349c75dae6cbceec9e Author: Alan Garny Date: Mon Sep 22 10:31:47 2014 +0200 Prevent dragging/dropping from our HTML pages. commit 9e9dd00ad9a19e77640a104a7511495e12175f47 Author: Alan Garny Date: Mon Sep 22 10:08:37 2014 +0200 Some minor CSS cleaning up. commit 0c2df8801f58530be5b987c185d1dad203283676 Author: Alan Garny Date: Sun Sep 21 20:30:12 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit ddb72896c455dc09ac60901242cebbcb32e63cd0 Author: Alan Garny Date: Sun Sep 21 19:49:55 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 8de293f4aad9b1bc58cefd8697b4e25fdc4091c1 Author: Alan Garny Date: Sun Sep 21 17:31:21 2014 +0200 Improved the translation of our views that display numbers. The idea is to be able to display numbers using digit grouping, this keeping in mind the current locale. commit 56dd0fbbe83f9fc8bc9dd05c31b3600a401081be Author: Alan Garny Date: Sun Sep 21 17:06:04 2014 +0200 Added OpenGL to our list of required Qt modules. commit feb182a5fc7a3c66efcb76c9ae302d5d3aa8a71f Author: Alan Garny Date: Sun Sep 21 14:58:07 2014 +0200 Improved the digit grouping of numbers by keeping in mind the current locale. commit 691f25fc50840e2efe9765dce435a39de14f8542 Author: Alan Garny Date: Sun Sep 21 14:56:32 2014 +0200 Improved the digit grouping of numbers by keeping in mind the current locale. commit c0bba9b3dbe1ae14fc188e3045a0ad0414903bc4 Author: Alan Garny Date: Sun Sep 21 12:13:18 2014 +0200 Use digit grouping in Core::sizeAsString(). commit 73dc1ad50f14749e6205110680813bf818a1bd5a Author: Alan Garny Date: Sun Sep 21 05:12:30 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit a682fd64a06526804812c560c6e5fa00abe79d36 Author: Alan Garny Date: Sat Sep 20 20:02:17 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit ba5c3f3075e6a6a8f2735b9efc13b5020d024df3 Author: Alan Garny Date: Sat Sep 20 18:00:14 2014 +0200 Refactoring: added a core GUI utility for retrieving the data URI of an icon. commit 066f4f2d94dab29f444e20b461ed1e81b2765d00 Author: Alan Garny Date: Sat Sep 20 15:23:19 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit b30fbc08d5d7b5cbf04d503dda04f5a85442f318 Author: Alan Garny Date: Sat Sep 20 15:20:37 2014 +0200 Refactoring: added a core CLI utility for doing digit grouping. commit ac6c098bb3a75ceebbbd0396b8e9bcc1eb9fe9ae Author: Alan Garny Date: Sat Sep 20 03:02:56 2014 +0200 Minor GUI clean up in CellmlAnnotationViewMetadataDetailsWidget. commit c83be375bc290a09bfa8f1c76b9a854aed2730de Author: Alan Garny Date: Sat Sep 20 02:58:56 2014 +0200 Improved the rendering of an icon in Core::UserMessageWidget. commit 22d6abeb7386d4c510adec927b96616b4a2bb510 Author: Alan Garny Date: Sat Sep 20 01:40:59 2014 +0200 Slight reworking of our Core::formatErrorMessage() function. commit d4b028a73aa5dd7e05eda1bc082b34ee9cad3e27 Author: Alan Garny Date: Sat Sep 20 01:32:43 2014 +0200 Some minor cleaning up. commit 6af3bafdb6ad8ea74ab74f1cfe0bfe4d1e34e6fd Author: Alan Garny Date: Sat Sep 20 01:09:30 2014 +0200 Some minor improvement to our HTML/CSS resources/files. commit 2ab7f1f70b325c07f634a4c8cc74dd64f04b90c5 Author: Alan Garny Date: Sat Sep 20 00:55:25 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit ce0b37a4e4643bb18efabbbe81cdb9b237c0ec88 Author: Alan Garny Date: Sat Sep 20 00:55:01 2014 +0200 CellML Model Repository window: some minor cleaning up of the HTML/CSS resource. commit 10953309b0e181951eafd40740f22abc09394a22 Author: Alan Garny Date: Sat Sep 20 00:51:22 2014 +0200 Some minor cleaning up of some HTML/CSS resources. commit e8a6b8de19a45d393aec27bf774c61d599ee875d Author: Alan Garny Date: Sat Sep 20 00:14:15 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 0bc0302002e4ae1cb6cc8c147417718eccd562d2 Author: Alan Garny Date: Sat Sep 20 00:01:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 7be8a25a4a0c9dfef8ed33da86fb67d7ceb4a286 Author: Alan Garny Date: Fri Sep 19 20:10:07 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 3efaf24da3f8fe2a9bdfce336a1e6f13c20a8ca4 Author: Alan Garny Date: Fri Sep 19 19:26:46 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit b2c10e612e0b4c392215a33f6a9bd6e993df00e9 Author: Alan Garny Date: Fri Sep 19 18:22:06 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit 277d2bb5f8dc5508bfb4ece25e1d631f8b9ddb54 Author: Alan Garny Date: Fri Sep 19 17:38:22 2014 +0200 Some minor cleaning up of some user messages. commit d643c557f675bb9dd57cfc96a9c835e8dd0354b8 Author: Alan Garny Date: Fri Sep 19 17:20:01 2014 +0200 Some minor cleaning up with regards to Core::UserMessageWidget. commit ffb7de2077614bbf44f2ee2a31df0f4f3bea8687 Author: Alan Garny Date: Fri Sep 19 16:05:26 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit ac44f592a4ff1f7da00a835eeb846b8f60b30f51 Author: Alan Garny Date: Fri Sep 19 15:21:01 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit 0e585484fa4cb10b9c0c8825e112c2e1d520947b Author: Alan Garny Date: Fri Sep 19 15:20:34 2014 +0200 Some minor cleaning up. commit 084ef455cce56313f80c0d96b9d4c9ecdc51ce77 Author: Alan Garny Date: Fri Sep 19 14:40:29 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit b946b5e373bfa98a922e210a1fd99c0bda08e762 Author: Alan Garny Date: Fri Sep 19 14:18:10 2014 +0200 CellML Annotation view: now use Core::UserMessageWidget to display user messages in CellmlAnnotationViewMetadataEditDetailsWidget (closes #474). commit 95ef480088d998b232babee867427d06b86a61ae Author: Alan Garny Date: Fri Sep 19 14:17:12 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit bd095594f03bdff601c002c3d974766e8ef267b6 Author: Alan Garny Date: Fri Sep 19 11:32:34 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 9d56d36d69bd23805d0841c34e696f7206fd74e0 Merge: 39fccdc48 14a9f6b2c Author: Alan Garny Date: Fri Sep 19 10:39:07 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470 commit 14a9f6b2c5991f557a9753d63d528adb5134c8c4 Author: Alan Garny Date: Fri Sep 19 10:38:54 2014 +0200 Some minor cleaning up [ci skip]. commit 39fccdc4877bb66cd8bd5d4100bc9e9b902d9e8e Merge: 0b6f7f9fb 53405c263 Author: Alan Garny Date: Fri Sep 19 09:59:54 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470 commit 53405c263b1ca7f1bfe27efa0bf1375e2d9ce83c Author: Alan Garny Date: Fri Sep 19 09:59:23 2014 +0200 CellML Model Repository window: make better use of the space when listing the models (closes #473). commit 73b417b33e683a6563f844726e3e096f498d9c71 Author: Alan Garny Date: Fri Sep 19 09:17:01 2014 +0200 Some minor cleaning up [ci skip]. commit 0b6f7f9fb50522bba146b56a20d07f6f00f08faa Merge: 8bd64d7e0 cc8e2d3b9 Author: Alan Garny Date: Fri Sep 19 09:09:52 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470 commit cc8e2d3b921ade8bbd36232cccd074daf94dc8dc Author: Alan Garny Date: Fri Sep 19 09:09:36 2014 +0200 Doc: updated the developer documentation [ci skip]. This is as a result of Xcode 6.0.1 having been released. commit 8bd64d7e0a5598949af427792c247eec886e433d Author: Alan Garny Date: Thu Sep 18 20:14:37 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 84940b3532db827f8928a3f0ea16d2a0539edc41 Author: Alan Garny Date: Thu Sep 18 17:26:36 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 0577a74bc85ae2f8f3215b2e196587823362ee87 Author: Alan Garny Date: Thu Sep 18 15:32:05 2014 +0200 Some minor cleaning up [ci skip]. commit ed2b9640c229e64e3e31ba70e9df435eb675e297 Merge: 1db809f24 15ec6ab1d Author: Alan Garny Date: Thu Sep 18 15:07:04 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470. commit 15ec6ab1dc5b1dd951eb810609e91c62e1dea781 Author: Alan Garny Date: Thu Sep 18 15:03:46 2014 +0200 CellML Annotation view: improved detection of direct terms (closes #472). commit 1db809f248c637477b9f178da4467cebb3f7e12c Author: Alan Garny Date: Thu Sep 18 14:50:28 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 08614b2b520110c8b67e8549912122ee14552454 Author: Alan Garny Date: Thu Sep 18 13:49:06 2014 +0200 Merge remote-tracking branch '\''origin/master'\'' into issue470. commit c6f8901d3ace6ccab5a2ff35fe96c3573bb9de15 Author: Alan Garny Date: Thu Sep 18 13:33:42 2014 +0200 CellML Annotation view: fixed an issue only the active file having its view retranslated (closes #471). commit e8d3dd7581124e9bd64334b6d81c791905361856 Author: Alan Garny Date: Thu Sep 18 13:16:30 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit feb714c1eb9843bc5b864f2d077de86f487cf2a2 Author: Alan Garny Date: Thu Sep 18 11:45:13 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit c910456a0ff7fa699c950017ea990fe10947e102 Author: Alan Garny Date: Thu Sep 18 10:26:04 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 3408fd619b3faf1b8769a7a7aa1c594b447d9ade Author: Alan Garny Date: Wed Sep 17 19:27:09 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit c28a4581a42270013161cb122e52d202777d692a Author: Alan Garny Date: Wed Sep 17 17:33:51 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts (#470). commit 08c1f073c42a14f357a20c013f86ddb7e24b802c Author: Alan Garny Date: Wed Sep 17 13:57:34 2014 +0200 Some minor cleaning up [ci skip]. commit 1eaae7277a0a44297b7fd1bdb22fd458f7a559d4 Author: Alan Garny Date: Wed Sep 17 11:36:52 2014 +0200 Some minor cleaning up [ci skip]. commit cb9ae2bb5c83e6d5b8ce7da41dcffcbf4b2bda3b Author: Alan Garny Date: Wed Sep 17 11:28:07 2014 +0200 Some minor cleaning up [ci skip]. commit 739ebc5e8718215110c135a17e9995a6557e9408 Author: Alan Garny Date: Wed Sep 17 11:05:08 2014 +0200 Some minor cleaning up [ci skip]. commit f5a5f62738234e6c8c1f20951ab67f4c0c322aa9 Author: Alan Garny Date: Tue Sep 16 18:24:42 2014 +0200 Some minor cleaning up [ci skip]. commit f71a5baeca8472d361f2bc907fd4f829141ca6ee Author: Alan Garny Date: Tue Sep 16 16:04:49 2014 +0200 Slight update to our Travis-CI script following our upgrade to Qt 5.3.2 (#468). commit 18e2d8a2592ee74d9cd1cd759232c2a28713a474 Author: Alan Garny Date: Tue Sep 16 15:59:06 2014 +0200 Qt 5: indirectly fixed an issue with moving a QWebView-based dockable window eventually crashing OpenCOR (closes #383). This is the indirect result of upgrading Qt from version 5.3.1 to version 5.3.2 (see issue #468). commit 53f78771c57be6d777624781180a1caa2afe0997 Author: Alan Garny Date: Tue Sep 16 15:52:23 2014 +0200 Qt: upgraded from version 5.3.1 to version 5.3.2 (closes #468). This also closes issue #383 as a result. commit 3bf87563223c7bfcf5b3370651c547805fb12e23 Author: Alan Garny Date: Tue Sep 16 13:48:35 2014 +0200 Some minor cleaning up [ci skip]. commit 0aee5aacf84a0e06fe815e5db6e22dab6fcd9c86 Author: Alan Garny Date: Tue Sep 16 13:16:27 2014 +0200 CellML Annotation view: improved the retrieval of possible ontological terms (closes #463). commit 0e8e17263c274ac79479f88f55addc4f5fce863b Author: Alan Garny Date: Tue Sep 16 13:14:14 2014 +0200 Some minor cleaning up [ci skip]. commit 8face7c5420f8b042645dee446739f68d320c1ce Author: Alan Garny Date: Mon Sep 15 16:15:53 2014 +0200 Core::BusyWidget: added support for showing the progress of a task (closes #467). Also some various cleaning ups of Core::BusyWidget. commit 147b6ae46d92557177751d30735b241dd63499a8 Author: Alan Garny Date: Mon Sep 15 13:29:04 2014 +0200 Some minor cleaning up [ci skip]. commit 5b676a56933202ca46577d83e4367f473c9f5011 Author: Alan Garny Date: Mon Sep 15 13:26:33 2014 +0200 Renamed Core::SpinnerWidget to Core::BusyWidget (closes #466). commit 6bd896c97a9e0a2cde67f3846eb66ee643d2094d Author: Alan Garny Date: Sat Sep 13 22:40:57 2014 +0200 Slight improvement to our CMake INITIALISE_PROJECT() macro [ci skip]. commit 3d5a501f87c00709b7fcb8774b9c9333b61fc9ce Author: Alan Garny Date: Sat Sep 13 21:44:38 2014 +0200 Done upgrading QScintilla to version 2.8.4 (closes #464). commit 6cdd99524327e5c681d567a1680da192e49cd5e3 Author: Alan Garny Date: Sat Sep 13 21:01:09 2014 +0200 Started work on upgrading QScintilla to version 2.8.4 (#464) [ci trip]. commit dd3e160cc3a5ca97f120dbaabad7bbc80428231d Author: Alan Garny Date: Thu Sep 11 14:54:07 2014 +0200 User documentation: slight updates to the HelpWindow plugin documentation [ci skip]. commit 011582acc39ec9b8730578195cbcc3add1f915d2 Author: Alan Garny Date: Thu Sep 11 14:41:22 2014 +0200 User documentation: slight updates to the HelpWindow plugin documentation [ci skip]. commit e4d88c1af192d5556d2d84f782d2adc2265dfc1f Author: Alan Garny Date: Tue Sep 9 22:54:31 2014 +0200 Some minor cleaning up [ci skip]. commit c7e11ebef3351910f9a5db7332a1778ffde52932 Author: Alan Garny Date: Mon Sep 8 13:52:59 2014 +0200 Single Cell view: got the simulation delay to work again (closes #461). commit 88565cbecd75e5a7b99aa422b39fde4ae7d8d9d1 Author: Alan Garny Date: Sun Sep 7 15:22:00 2014 +0200 New snapshots. commit 50527cd45aad15dbc85b5989a2990fe7befde6fd Author: Alan Garny Date: Sun Sep 7 15:07:43 2014 +0200 Central widget: now use a spinner when switching to a remote file or views for a remote file (closes #456). commit 9a5b04d5beb47edb48a2d2a515e7df48433ae47e Author: Alan Garny Date: Sun Sep 7 13:53:44 2014 +0200 Central widget: some work on using a spinner when switching to a remote file or views for a remote file (#456) [ci skip]. commit 21f4d8f562e3d87ec24d47f64198c1f0279be774 Author: Alan Garny Date: Sun Sep 7 13:48:11 2014 +0200 Some minor cleaning up [ci skip]. commit a618440a07d48595909c8eefb776f3ec9decdfb3 Author: Alan Garny Date: Sat Sep 6 20:16:40 2014 +0200 Help window: changed its title from "OpenCOR Help" to "Help" [ci skip]. commit be1c8fac84d25b163820d3da8c2688094f691de5 Author: Alan Garny Date: Sat Sep 6 19:39:16 2014 +0200 Some updates to the user and developer documentations [ci skip]. commit f439b1dacfcc7e75215e29ed52cb406acc2e8a1e Author: Alan Garny Date: Sat Sep 6 19:30:40 2014 +0200 Done upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (closes #460). commit aa4981adf94813f95654f483379a901351075106 Author: Alan Garny Date: Sat Sep 6 16:44:57 2014 +0200 Some work on upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (#460) [ci skip]. commit bff8461ec51ab3f96514e5118377b8f485aaa5f1 Author: Alan Garny Date: Sat Sep 6 13:45:56 2014 +0200 Some work on upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (#460) [ci skip]. commit dd9e288dc8e59ae78d943eff81eeadee2e0b27b0 Author: Alan Garny Date: Sat Sep 6 12:09:21 2014 +0200 Some work on upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (#460) [ci skip]. commit e64cf71811a3c771634bb5d6cde94d68bd1358ab Author: Alan Garny Date: Sat Sep 6 12:04:52 2014 +0200 Some work on upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (#460) [ci skip]. commit d3c68fa3b3f736abcfd3e3d8850441e6099eb589 Author: Alan Garny Date: Sat Sep 6 11:09:34 2014 +0200 Some work on upgrading LLVM (incl. Clang) from version 3.4.2 to version 3.5 (#460) [ci skip]. commit 42a9db32449c65b63cefd094c352d81cb63bad02 Author: Alan Garny Date: Fri Sep 5 17:21:06 2014 +0200 Some minor cleaning up [ci skip]. commit c8b2637f87b095c1f3c5c07ca36e2cd20222420f Author: Alan Garny Date: Thu Sep 4 19:11:13 2014 +0200 CellML Annotation view: now use a spinner when retrieving possible ontological terms (closes #455) [ci skip]. commit a3085cdfd5a4a6658cd703cd44a73f376ad93618 Author: Alan Garny Date: Thu Sep 4 19:09:57 2014 +0200 CellML Annotation view: now use a spinner when retrieving possible ontological terms (closes #455). commit 3d5368a9fd9f97829a625590ba3d6e67a63a1167 Author: Alan Garny Date: Thu Sep 4 19:03:13 2014 +0200 Some minor cleaning up [ci skip]. commit a1602fb964747044e4268855f90b728261170201 Author: Alan Garny Date: Thu Sep 4 18:56:45 2014 +0200 CellML Annotation view: some work towards using a spinner when retrieving possible ontological terms (#455) [ci skip]. commit 1d4e36ccc688d716f2137c0ce204fe9bd066cfd2 Author: Alan Garny Date: Thu Sep 4 18:17:47 2014 +0200 Some minor cleaning up [ci skip]. commit c14286c0a6d94b9300380944a33397d93f525779 Author: Alan Garny Date: Thu Sep 4 17:46:41 2014 +0200 CellML Annotation view: some work towards using a spinner when retrieving possible ontological terms (#455) [ci skip]. commit 243c2b81a45d31155ffad3d4443b2be8de418973 Author: Alan Garny Date: Thu Sep 4 16:32:48 2014 +0200 Single Cell view: show a spinner widget when exporting some simulation data (since it may take time) (closes #454) [ci skip]. commit ca2fd1696b7cd21162874bd3e50a9194370f8d5d Author: Alan Garny Date: Thu Sep 4 16:28:38 2014 +0200 Single Cell view: show a spinner widget when exporting some simulation data (since it may take time) (closes #454). commit 6aef292a619d6b9d29d0a9037a0202f179616b7a Author: Alan Garny Date: Thu Sep 4 16:20:35 2014 +0200 CSV Data Store: it doesn'\''t '\''block'\'' the main thread anymore when exporting a lot of data (closes #459). commit c228f664ff5014cae9071a238f69e9b6f875451b Author: Alan Garny Date: Thu Sep 4 15:00:36 2014 +0200 Some reworking of our spinner support widget [ci skip]. It now only has a spinner widget when really necessary, i.e. when one needs to be shown. commit 31fa5b5154fbd563f3374f18805ab64dedef2777 Author: Alan Garny Date: Thu Sep 4 14:34:56 2014 +0200 Some minor cleaning up [ci skip]. commit ecb3e7b6f32749518402a0240ae631062d36032b Author: Alan Garny Date: Thu Sep 4 11:25:06 2014 +0200 Travis-CI: build using one core only. Until now, we were using half of the cores available on a Travis-CI build machine, but this resulted in regular g++ crashes on 64-bit Ubuntu. So, now, it’s going to take longer to build, but at least it should be fine… commit c7f4f892f2b6034433687783224f8292981b6665 Author: Alan Garny Date: Thu Sep 4 11:04:01 2014 +0200 CellML Annotation view: allow all variables to be exposed, not only '\''defined'\'' ones (closes 458). commit ae28384ef5c073c1c0b15bbed29d347f214eb832 Author: Alan Garny Date: Wed Sep 3 17:47:44 2014 +0200 Some minor cleaning up [ci skip]. commit 431ebe8145b01867cd3dac88ddec1e71167f6631 Author: Alan Garny Date: Wed Sep 3 16:15:42 2014 +0200 We now have a spinner widget in our '\''core'\'' view and window widget classes [ci skip]. commit 7c952007fa93fbd2312cdfde5fcb12ef4c1ae50b Author: Alan Garny Date: Wed Sep 3 15:51:26 2014 +0200 Renamed the Core::DockWidget class to Core::WindowWidget. commit 602a73b4b6ab5d275b2d134cbf33fd1c9c10a9b3 Author: Alan Garny Date: Wed Sep 3 15:44:41 2014 +0200 Added a spinner widget to our window widget (#452) [ci skip]. commit 7886829dfdc3af67ecc9fd7679622e7d7cde689f Author: Alan Garny Date: Wed Sep 3 15:43:19 2014 +0200 Some minor cleaning up [ci skip]. commit f741f6a6d479f939cf34ec723facce9e47779ebd Author: Alan Garny Date: Wed Sep 3 15:19:03 2014 +0200 Moved the Spinner widget to the Core plugin. Indeed, anything that is needed by something from the Core plugin really ought to be in the Core plugin since the Core plugin shouldn’t have any dependency whatsoever. commit b802d4ce099116440f779f5a595f98d63ef4f675 Author: Alan Garny Date: Wed Sep 3 14:51:43 2014 +0200 Renamed the Core::DockWidget class to Core::WindowWidget. commit d934d3eaa6de07da5e3f88cd32bd72b7bb783183 Author: Alan Garny Date: Wed Sep 3 11:22:21 2014 +0200 Renamed the DataStoreVariable'\''s '\''name'\'' property to '\''label'\''. commit 360e5a646bf5ccbeb07016c601cca93dad5a1865 Author: Alan Garny Date: Tue Sep 2 19:41:58 2014 +0200 Done making it possible to build both the 32-bit and 64-bit versions of OpenCOR on the same 64-bit Windows machine [ci skip]. commit cf8e2f4167525fe0b5166fd0e7a8e380b62b8fef Author: Alan Garny Date: Tue Sep 2 19:41:28 2014 +0200 Some minor cleaning up [ci skip]. commit 02ce9d0c690487eadb1782d9040672d3040a5412 Author: Alan Garny Date: Tue Sep 2 18:24:56 2014 +0200 Some work on making it possible to build both the 32-bit and 64-bit versions of OpenCOR on the same 64-bit Windows machine [ci skip]. commit d321e154fa9600d502dc5af812569f5046b05f8f Author: Alan Garny Date: Tue Sep 2 18:18:18 2014 +0200 Some cleaning up in our batch scripts [ci skip]. commit c3d50548a6ee653395d26c0887b000b0ef4a0a45 Author: Alan Garny Date: Mon Sep 1 18:18:30 2014 +0200 Slight update to the developer documentation [ci skip]. commit 02b319bd11b29bcae0ebe2d215cd7da95d943384 Author: Alan Garny Date: Mon Sep 1 17:06:25 2014 +0200 Slight update to the Windows distribution README.txt file [ci skip]. commit 60a522a1cec24a522acfc248efa7d59d26b5fdea Merge: 9774b6e2d 897c1f48f Author: Alan Garny Date: Mon Sep 1 11:26:09 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 9774b6e2d0dc23da42e7104d2e35191ec5eea3ad Author: Alan Garny Date: Mon Sep 1 11:25:53 2014 +0200 CSV Data Store plugin: prevent people from un/selecting it [ci skip]. This will remain the case until we have implemented issue #451. commit 897c1f48fb50b10ea70904799c5459d3aeaf50d3 Merge: ebb95e096 1acc8275a Author: Alan Garny Date: Sun Aug 31 14:05:18 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ebb95e096c3fefe53ec7f2b7727fc14349140a2c Author: Alan Garny Date: Sun Aug 31 14:04:21 2014 +0200 Some minor cleaning up [ci skip]. commit 1acc8275a94eb0ab6312559e5dc3db51015fa800 Author: Alan Garny Date: Sun Aug 31 03:52:13 2014 +0200 Some minor cleaning up [ci skip]. commit 4e72583477c01e1e520b80dbb93a3a5949102a93 Author: Alan Garny Date: Sun Aug 31 03:32:31 2014 +0200 Now build OpenCOR using MSVC 2013, which is the only version of MSVC that is supported by Qt for both 32-bit and 64-bit Windows. As a result, we are now able to build both 32-bit and 64-bit versions of OpenCOR (closes #35). commit 585e5222bb1ad8048bbe8ce3d753ec78b979f0b7 Author: Alan Garny Date: Fri Aug 29 17:13:50 2014 +0200 Some minor cleaning up [ci skip]. commit 794008f7c76c87b0e8ce5fdd95916043ea9ee9e2 Author: Alan Garny Date: Fri Aug 29 14:22:24 2014 +0200 CellML Model Repository window: retrieve the list of CellML files only the first time the window is shown (closes #457). commit 55df8e1704761bd21d5470982ac872f31757a271 Author: Alan Garny Date: Fri Aug 29 09:55:41 2014 +0200 Some minor cleaning up [ci skip]. commit 26c2c37e00d66b1c395192ad522c10c8f12b3d4b Author: Alan Garny Date: Thu Aug 28 18:12:06 2014 +0200 Added a .gitattributes file (closes #453). commit 3a07b4e44a118f4b5680b30461cf79c7ae5d6b34 Author: Alan Garny Date: Thu Aug 28 17:47:37 2014 +0200 Now remove .ninja* files when cleaning [ci skip]. commit 0d7be26449c0455ed72e797fa507889b1f551c9e Author: Alan Garny Date: Thu Aug 28 17:35:04 2014 +0200 CellML Model Repository window: now use the spinner to indicate that the list of CellML files is being retrieved (closes #452) [ci skip]. commit 43f3173e65b7879d276f0e911ea292433b441bae Author: Alan Garny Date: Thu Aug 28 17:26:41 2014 +0200 CellML Model Repository window: now use the spinner to indicate that the list of CellML files is being retrieved (closes #452). commit 1d00c206782fa54409fa47dc2b3d7dfad6982cda Author: Alan Garny Date: Thu Aug 28 17:22:10 2014 +0200 Done creating a spinner widget (closes #448) [ci skip]. commit 991648a45cdd996955bab402d6f18502cbc671cb Author: Alan Garny Date: Thu Aug 28 17:17:30 2014 +0200 Done creating a spinner widget (closes #448). commit c4a0d62ffe72cd66f08a746061c480e29a9a2738 Author: Alan Garny Date: Wed Aug 27 18:44:07 2014 +0200 Some minor cleaning up [ci skip]. commit 42bb7c5014831140b790daf576f9d77c72de00ac Author: Alan Garny Date: Wed Aug 27 17:39:35 2014 +0200 Some minor cleaning up [ci skip]. commit 23a45743e5d0a7130ce654adccd850ee02589568 Author: Alan Garny Date: Wed Aug 27 17:23:33 2014 +0200 Fixed a small issue with our Plugin class [ci skip]. Its statusErrorsCount() method was returning 1 when there were actually no errors. commit e7679e1a40f07ec9443032792e75a6e998ef8b29 Author: Alan Garny Date: Wed Aug 27 16:37:14 2014 +0200 Travis-CI: upgraded the version of CMake on Ubuntu and asked for the sample plugins to be built too. commit e7e1ee2b29ad3405b70aa17262370054d3b097cf Author: Alan Garny Date: Wed Aug 27 16:29:52 2014 +0200 Travis-CI: upgraded the version of CMake on Ubuntu and asked for the sample plugins to be built too. commit 0942e5a25099c0795c071267145606c0b9dc9778 Author: Alan Garny Date: Wed Aug 27 16:08:41 2014 +0200 Some minor cleaning up [ci skip]. commit bb99c0087b36cb3842615a9271738c0b4bb39bb6 Author: Alan Garny Date: Wed Aug 27 15:45:26 2014 +0200 Some work on creating a spinner widget (#448) [ci skip]. commit fdfdd8c67b09f3331ca784118126125c59f2d92d Author: Alan Garny Date: Wed Aug 27 14:33:28 2014 +0200 Minor fix our Editor widget [ci skip]. It was related to the width of the icons for the find widget. commit 4a50c7a78792fb3fdc8ae60a183e64ae355ca194 Author: Alan Garny Date: Wed Aug 27 11:31:52 2014 +0200 Some minor updates to third-party libraries page of the developer documentation [ci skip]. commit d48f65336beb7f8e1d3435e8a65ee23286a53660 Author: Alan Garny Date: Tue Aug 26 18:56:42 2014 +0200 Updated the user documentation following the merging of pull request #445 (closes #450). commit f54723b44b7f35856c9332d836c006c5a3958f84 Author: Alan Garny Date: Tue Aug 26 18:44:10 2014 +0200 Some minor cleaning up of our plugins window code [ci skip]. commit 2c7305d94920dcffc75d9ed95852093302eba9d5 Author: Alan Garny Date: Tue Aug 26 18:29:12 2014 +0200 Some minor cleaning up related to our new data store code [ci skip]. commit d3386ba25873841d5fb45d9fa1efd8571ce08ef9 Author: Alan Garny Date: Tue Aug 26 17:46:36 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 907b87db4af45df0ad26a21ccc4b0f4ccfc7f35d Author: Alan Garny Date: Tue Aug 26 17:22:46 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 1bbffc2e857aaf2316c5d18cb981683b2f57b69d Author: Alan Garny Date: Tue Aug 26 16:00:20 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 849b544767e9e389cc79468163e3d9cb456ae6cd Author: Alan Garny Date: Tue Aug 26 15:28:59 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 21b4e55be5bb309a4db33ebcb496e7a8c146dfbd Author: Alan Garny Date: Tue Aug 26 15:26:41 2014 +0200 Some minor cleaning up [ci skip]. commit 8fb2ffc56dd29aab1cb6dc1544e01c3c71f9ccab Author: Alan Garny Date: Tue Aug 26 14:51:30 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit ee0b4557e7c05319666885c26c75f1205c4c11a5 Author: Alan Garny Date: Tue Aug 26 13:52:59 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 52bc7077fc4866e46a0132ecb2f033553795d1e6 Author: Alan Garny Date: Tue Aug 26 10:39:16 2014 +0200 Some minor cleaning up [ci skip]. commit 8f21c20602e1ed698af65fecc581b2a63adde1fe Author: Alan Garny Date: Tue Aug 26 10:12:33 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 6a0c1741f58fd067b0114261eda2fb06fc688e9d Merge: 75704fdf7 3ec1b6350 Author: Alan Garny Date: Tue Aug 26 10:10:00 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 75704fdf727217ba2583cd7a44a4693e69e48501 Author: Alan Garny Date: Tue Aug 26 10:09:00 2014 +0200 Slight update to the team'\''s page [ci skip]. commit 3ec1b63505380aef450df8494c5b2fab888d320a Author: Alan Garny Date: Mon Aug 25 20:24:21 2014 +0200 CSS-related update to our documentation [ci skip]. commit f956062455d59a270c6485f175bc150e7d320030 Author: Alan Garny Date: Mon Aug 25 18:46:48 2014 +0200 Re-included QVector in cellmlfilerdftriple.h [ci skip]. Indeed, without it, we get various warning messages between QList and QVector on Windows. commit b5b037748607d1ed83c0c11be7684950a23f1f2d Author: Alan Garny Date: Mon Aug 25 18:36:18 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 2fdd6e8143701a7e92e8521559962b7069a74a16 Author: Alan Garny Date: Mon Aug 25 18:10:17 2014 +0200 Some minor cleaning up [ci skip]. commit 55adfa7d354eec6428cd85164844e35076ba495e Author: Alan Garny Date: Mon Aug 25 17:44:33 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 09fbbeb94adffd33de0a098baa593e768e86d305 Author: Alan Garny Date: Mon Aug 25 17:43:39 2014 +0200 Some minor cleaning up [ci skip]. commit 7862a7087a5c6b1ead53b553d2c3bfb06b233419 Author: Alan Garny Date: Mon Aug 25 16:52:01 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 1dc8a9da72034225ba90d5f416b03c68f24f6e57 Author: Alan Garny Date: Mon Aug 25 15:18:38 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit 9737a963e483dacfd7a52077fc7a04ef6887a41d Author: Alan Garny Date: Mon Aug 25 15:04:11 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit d1213091743c85d4bc2895f20b410674f94747e1 Author: Alan Garny Date: Mon Aug 25 14:36:29 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit b14d53796d7b5fb588479b095fa867e55099d57b Author: Alan Garny Date: Mon Aug 25 14:10:40 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit a38d28e5ac0bcc86beaf232c3410bac005a5ab89 Author: Alan Garny Date: Mon Aug 25 13:52:23 2014 +0200 Some work towards making the code of pull request #445 more OpenCOR like (#449). commit b6b16e0bd42be59b3b78c2112d00175fa75001aa Author: Alan Garny Date: Mon Aug 25 13:42:59 2014 +0200 Some minor cleaning up [ci skip]. commit dfde2940b890c82a8a310cb96364665161868bff Author: Alan Garny Date: Mon Aug 25 13:04:21 2014 +0200 CSS-related updates to both our developer and user documentation [ci skip]. commit 688d9bbed0e090f772b94e424c79b02fbf4d5798 Author: Alan Garny Date: Fri Aug 22 16:29:15 2014 +0200 Updated the user and developer documentations [ci skip]. commit fd03f1256ef34e968d6955e3566ac3009596bf1b Author: Alan Garny Date: Fri Aug 22 15:41:31 2014 +0200 Pull request #445 can now build fine on Windows (closes #447). commit 54bdc519ccda43bda404ae9c456291b6c7f1b6d9 Author: Alan Garny Date: Fri Aug 22 15:19:31 2014 +0200 Updated the user and developer documentations [ci skip]. commit 941f255421ca00e2b0aa53a57988f12eccfe0c40 Author: Alan Garny Date: Fri Aug 22 14:35:16 2014 +0200 Some minor cleaning up [ci skip]. commit 97caf52cb42666ca84babd128e594b628fd849e4 Merge: 4f1273567 d42522657 Author: Alan Garny Date: Fri Aug 22 13:08:57 2014 +0200 Merge pull request #445 from dbrnz/datastore Datastore plugin commit d425226578fb5f148f7d0ea41c3d1933ba7bf0e1 Author: David Brooks Date: Fri Aug 22 15:08:57 2014 +1200 The CsvStore plugin depends upon CoreData, so change it'\''s position in the global CMakeLists.txt. commit fc196f6a3271970019781eeb69cec9891b035d2e Author: David Brooks Date: Fri Aug 22 15:00:56 2014 +1200 Memory for all of a DataSet'\''s variables is managed within the class. commit de9c739b37bf8f1bd957d63fe5beabae5f044aaf Author: David Brooks Date: Tue Aug 12 16:48:08 2014 +1200 GCC complains if we assert an unsigned quantity is >= zero. commit 8d30c8095fae07db584352b234784b7e0295043d Author: David Brooks Date: Thu Aug 7 16:17:46 2014 +1200 Data storage implementation code can be moved out of the header file without impacting performance. commit 626b3fdd3661350a36e561794f2ce4439cb7ccb2 Author: David Brooks Date: Fri Jul 25 15:41:41 2014 +1200 Header doesn'\''t have QObjects so remove from MOC list. commit 2b7cbc54f7452770d6b97d91886cabbc01019348 Author: David Brooks Date: Fri Jul 25 15:40:55 2014 +1200 A dataset'\''s variables no longer include the VOI. commit 0bdea775a7e78518901caea593501ede5929a8a7 Author: David Brooks Date: Fri Jul 25 15:37:22 2014 +1200 Tweaks to CoreData store. commit 881ab7192bdc045cc1955685ee9152e5d995a026 Author: David Brooks Date: Tue Jul 1 22:50:37 2014 +1200 CSV export of a DataSet is now in its own plugin. commit f87c9e3d44215cef96c7233da0c3f0e5f96b5684 Author: David Brooks Date: Tue Jul 1 22:47:07 2014 +1200 Rename `DataVariable::data()` to `DataVariable::getData()` for consistency. commit 4c95f76a25aa186e5d673c1b6cf1d4f7a3d9fab7 Author: David Brooks Date: Tue Jul 1 22:46:07 2014 +1200 Define more getter methods for DataSet and DataVariable. commit 3e1e3821eed2bce265a95367da9523dce73aac1e Author: David Brooks Date: Tue Jul 1 22:43:53 2014 +1200 Returning `const QString` means we can'\''t use `replace()` directly on the result... commit 2f77eb9d79994543567688aef001886c55ae50bc Author: David Brooks Date: Tue Jul 1 21:57:40 2014 +1200 Fix spelling. commit 2e6c909b08321ad5b13113ebb4c6095177a4bf71 Author: David Brooks Date: Tue Jul 1 21:50:02 2014 +1200 Rename `CoreDatastore` plugin to `CoreData`. commit 35b0241ee49bc5e051cb616a6262e592e1dcc7c0 Author: David Brooks Date: Tue Jul 1 21:33:15 2014 +1200 Track which of a DataSet'\''s variables is tracking the variable-of-integration. commit 5f3d3d1eea2dbebc55e42a9c6f8938a95a25ff0c Author: David Brooks Date: Thu Jun 26 23:23:33 2014 +1200 Fix typo. commit 9f8f1773250bd174050513d32f5223701dd7dab3 Merge: 2fdc49e98 4f1273567 Author: David Brooks Date: Fri Aug 22 10:53:59 2014 +1200 Merge branch '\''master'\'' into datastore commit 4f127356700168c9eaaef4020e267a48cef85d61 Author: Alan Garny Date: Wed Aug 20 19:55:08 2014 +0200 Slight updates to the user documentation [ci skip]. commit 4d9b609b734b6595616c0e990099c43e87feea24 Author: Alan Garny Date: Wed Aug 20 19:51:02 2014 +0200 CellML Annotation view: added support for the new BioModels.net Qualifiers (closes #442) [ci skip]. commit 0095e4f1b1c413e1629acc2b78a61a6de98f7d7b Author: Alan Garny Date: Wed Aug 20 19:41:33 2014 +0200 CellML Annotation view: added support for the new BioModels.net Qualifiers (closes #442). commit b5c354c20d2869bbed6733c26f4b5f80d7fbed23 Author: Alan Garny Date: Wed Aug 20 19:12:12 2014 +0200 Packaging: the files contained in the ZIP file are now in the root directory and not under Applications/OpenCOR (closes #443). commit 076024f18d8bbcd89e8a66502da60cf600397542 Author: Alan Garny Date: Wed Aug 20 19:08:27 2014 +0200 Some minor cleaning up [ci skip]. commit c6526526126c12d8cd23c9cd6fb2571b63c70e0e Author: Alan Garny Date: Wed Aug 20 19:02:21 2014 +0200 Some minor cleaning up [ci skip]. commit d1956d3f7210bf01ee9f62ae3af90045c666feaa Author: Alan Garny Date: Wed Aug 20 17:31:51 2014 +0200 Some minor cleaning up [ci skip]. commit 6c965df5fe08da759d4ec289179955f6d5f1aa00 Author: Alan Garny Date: Wed Aug 20 16:44:54 2014 +0200 Now use @rpath rather than @executable_path on OS X (closes #434). commit 9e99d3854092127c4414981cccffc3aab0ad1878 Author: Alan Garny Date: Wed Aug 20 15:50:27 2014 +0200 Some minor cleaning up [ci skip]. commit f543e70d4a0d378988ae44071d9cf30977bc3a2f Author: Alan Garny Date: Wed Aug 20 15:22:33 2014 +0200 Updated the RPATH value for Linux. commit 0b7fd98ae03c3de4bc3e5b3fdfc3ecc42c087372 Author: Alan Garny Date: Wed Aug 20 14:03:42 2014 +0200 Re-enabling the Pretty CellML view and updated the documentation accordingly (#17) [ci skip]. commit c59580b669b622bbb812bf7ca4682dc0a302240b Author: Alan Garny Date: Wed Aug 20 13:50:43 2014 +0200 Releasing snapshots once again [ci skip]. commit 6555a8d8426e8a9303f9c47116d12215e3ab95e0 Author: Alan Garny Date: Tue Aug 19 19:14:43 2014 +0200 Done updating the user documentation for version 0.3 of OpenCOR (closes #428). commit 2dc7022a20f67a0c980655c3068fb1a49109c159 Author: Alan Garny Date: Tue Aug 19 19:07:47 2014 +0200 Minor updates to the developer and user documentations [ci skip]. commit 747acb78f02d80a42695ec102e13f5479fdc724f Author: Alan Garny Date: Tue Aug 19 18:48:07 2014 +0200 Updated the user documentation (#428) [ci skip]. commit dc07bd2a9930105e2c4a7067e4ec38d77e8a51a0 Author: Alan Garny Date: Tue Aug 19 18:44:58 2014 +0200 Some minor cleaning up [ci skip]. commit 94fe1af80fd3c7b62a5a4301450024766f978854 Author: Alan Garny Date: Tue Aug 19 17:26:18 2014 +0200 Slowly getting ready for version 0.3 [ci skip]. commit 6e847b502ffc66a12347f28263e3072e5301a094 Author: Alan Garny Date: Tue Aug 19 17:15:50 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 4a90bc33e02f0e1c42430fb2d9ceed198e73f818 Author: Alan Garny Date: Tue Aug 19 16:33:06 2014 +0200 Updated the user documentation (#428) [ci skip]. commit fbe86054fc29c941353cf82e5efd6dcf072453f0 Author: Alan Garny Date: Tue Aug 19 16:16:39 2014 +0200 Updated the user documentation (#428) [ci skip]. commit d50fd2f9da21d413525dc60dd20919c87d663c0d Author: Alan Garny Date: Tue Aug 19 15:15:36 2014 +0200 Some minor cleaning up. commit f53af3362e7a3a3b431dc5a02e81b692d6f5b6c3 Author: Alan Garny Date: Tue Aug 19 15:03:22 2014 +0200 CellML support: fixed an issue with nested local imports not being properly retrieved (closes #441). commit 9d4c2c9e8782a5feb1d4c67b9caaee212b0134a7 Author: Alan Garny Date: Tue Aug 19 13:59:22 2014 +0200 Updated the user documentation (#428) [ci skip]. commit edc433c7e0e26be963d19958808a102d3d126db8 Author: Alan Garny Date: Tue Aug 19 13:15:26 2014 +0200 Updated the user documentation (#428) [ci skip]. commit f960a583992a00f2745a0a319724541c89f32abd Author: Alan Garny Date: Tue Aug 19 10:48:18 2014 +0200 Minor update to the developer documentation following the release of Qt Creator 3.2.0 [ci skip]. commit b697f16f18b782ef60ab6724e23e40bd76c7b7c4 Author: Alan Garny Date: Tue Aug 19 09:46:21 2014 +0200 CellML API plugin: updated its binaries. Somehow, the debug binaries were wrong, resulting in a debug version of OpenCOR not being able to load CellML-based plugins. In the same, running the tests on a debug version of OpenCOR would fail for CellMLTools. commit daa2f4dd7d490d3dc1642dc1b989adc77f1c580d Author: Alan Garny Date: Mon Aug 18 21:27:45 2014 +0200 Slight change to the README.txt file for the CellML API plugin [ci skip]. commit 314ceaba56503ea4b0257dfa19161a5792ca4c52 Author: Alan Garny Date: Mon Aug 18 18:15:13 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 79ee61d90f5fac76688599d79c5b61ac28bf39e4 Author: Alan Garny Date: Mon Aug 18 18:07:36 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 8c83bbfe9487cdbd144c0f1542984b63c54fa151 Author: Alan Garny Date: Mon Aug 18 17:58:49 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 4df4197f2e4262430ecc6e9656e18fb35a7b6c6b Author: Alan Garny Date: Mon Aug 18 17:48:36 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 2fbf40aff9dd95c8df5c56820017be1f14cdbd7e Author: Alan Garny Date: Mon Aug 18 17:25:32 2014 +0200 Updated the SUNDIALS plugin'\''s binaries. commit 9c5fe98c15ac28f12d65a3faac557f972030004e Author: Alan Garny Date: Mon Aug 18 17:01:29 2014 +0200 Updated the user documentation (#428) [ci skip]. commit fab146b0b9ec7c9d579e442946375ba6bec71da6 Author: Alan Garny Date: Mon Aug 18 16:58:54 2014 +0200 Slight update to the description of our SUNDIALS plugin [ci skip]. commit 8c1351391babbfc8bea6a2013ac2d55065493bf4 Author: Alan Garny Date: Mon Aug 18 16:20:22 2014 +0200 Updated the user documentation (#428) [ci skip]. commit f4d33c4308b7e671a7e537c27d021184828151f7 Author: Alan Garny Date: Mon Aug 18 15:38:33 2014 +0200 Updated the user documentation (#428) [ci skip]. commit c8048bd946610f57f8559582bd9f8e64d48cbb43 Author: Alan Garny Date: Mon Aug 18 14:33:38 2014 +0200 Some minor cleaning up [ci skip]. commit fa2d64c2456a5c6c00f922187c0190a756b24a05 Author: Alan Garny Date: Mon Aug 18 14:29:55 2014 +0200 Slowly getting ready for version 0.3. commit a9287c11e3a3fb44fa19dc20f04433002d1020e1 Author: Alan Garny Date: Mon Aug 18 13:06:51 2014 +0200 Slight improvements to initPluginsPath() [ci skip]. commit 7abd88a22413e54c2fa68843a986a3edb68ffe4e Author: Alan Garny Date: Sun Aug 17 11:25:17 2014 +0200 Improved Plugin::info() by only providing the error message, if any, when requested. commit 9565813d7d0e2ce4abcb68b80335fdc7536702a4 Author: Alan Garny Date: Sun Aug 17 11:07:01 2014 +0200 Some minor cleaning up [ci skip]. commit c910c7eca93285ed5ff4e06d0729e8c623ac6562 Author: Alan Garny Date: Sun Aug 17 09:47:12 2014 +0200 Only copy necessary Windows distribution files [ci skip]. commit 23cc1b67fbaeee58386d6de8bfb74170f3f8daff Author: Alan Garny Date: Sat Aug 16 18:01:14 2014 +0200 Use proper (i.e. release or debug) Windows distribution files [ci skip]. commit 6f51fefa98d3234712d56295c7b99744907b29fc Author: Alan Garny Date: Sat Aug 16 17:59:47 2014 +0200 Some minor cleaning up of the CellML API readme file [ci skip]. commit 8b6c0571325bea734873bbf9c3d173b781a6379d Author: Alan Garny Date: Sat Aug 16 16:23:20 2014 +0200 Use msvcp100d.dll and msvcr100d.dll (rather than msvcp100.dll and msvcr100.dll) when building in debug mode [ci skip]. commit b6a22109be83cae8173e25e057cd862a72649713 Author: Alan Garny Date: Fri Aug 15 22:57:26 2014 +0200 Some minor cleaning up [ci skip]. commit f4ed00f957f89617ddfae4afa6f61ede0d56ff2c Author: Alan Garny Date: Fri Aug 15 22:42:15 2014 +0200 Some minor cleaning up. commit 1d58cf39437bd37c02d1ac231afd81ae4c8245d3 Author: Alan Garny Date: Thu Aug 14 23:45:08 2014 +0200 Updated the user documentation (#428) [ci skip]. commit a8a1c0e094fe1e54fd8c2555f2715537d84f4f78 Author: Alan Garny Date: Thu Aug 14 23:07:13 2014 +0200 Core plugin: open-related actions are now disabled when no views are available (closes #440). commit 1d22037652474c38ea7ed0805a530558333726e6 Author: Alan Garny Date: Thu Aug 14 21:51:57 2014 +0200 Fixed the issue with some plugin selections crashing OpenCOR on restarting (closes #439). commit 9da316ad25016a65eb941bc5898efc6bee2c9881 Author: Alan Garny Date: Thu Aug 14 21:29:35 2014 +0200 Viewer: fixed the issue with digit grouping not working with integer numbers (closes #438). commit 9403b1c49a7dc77e97c36b03d013b02f48beff61 Author: Alan Garny Date: Thu Aug 14 17:03:05 2014 +0200 Improved the file and CellML file managers (closes #437). commit 43cdc8d5e965d841f32334b90964a6f234111e2c Author: Alan Garny Date: Thu Aug 14 16:38:18 2014 +0200 CellML support: slight improvement to our isCellmlFile() method (closes #436). commit 03d6fb37aaea1d973e37dbe197980fe5e6634729 Author: Alan Garny Date: Thu Aug 14 16:11:25 2014 +0200 Some minor cleaning up [ci skip]. commit 3f8c71eb29485ddaa61ca53eebd493e38383e00c Author: Alan Garny Date: Fri Aug 8 15:59:11 2014 +0200 Updated our CellML API binaries. commit 29e58a11f5a28c1fffdc571d95cf4014b4259390 Author: Alan Garny Date: Fri Aug 8 15:09:57 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 6320ef6bfa5d95dc50e33387f100a669dd36f822 Author: Alan Garny Date: Fri Aug 8 14:49:11 2014 +0200 Slight updates to the developer documentation [ci skip]. commit 98d26e1de41468d04f527094dba25f873e8bb306 Author: Alan Garny Date: Fri Aug 8 13:00:43 2014 +0200 Some minor cleaning up [ci skip]. commit 6e8829f4b6d0e272b80f78107f94880f8bd6e791 Author: Alan Garny Date: Fri Aug 8 11:58:49 2014 +0200 Can now use whatever file extension we want when exporting a file to CellML 1.0 (closes #433). commit c4dba6bf46426016a6f29ce48d0ef4dd94288c84 Author: Alan Garny Date: Fri Aug 8 11:03:14 2014 +0200 Slight updates to the developer documentation [ci skip]. commit 4726d87f889665701b3ec26e6b04419e349db20e Author: Alan Garny Date: Fri Aug 8 10:49:14 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 2bec3dac19564faa09dd79ddf4ab045526c78c2c Author: Alan Garny Date: Thu Aug 7 17:39:50 2014 +0200 Decrease the size (should it be possible) of some deployed files on Linux [ci skip]. commit b0de7e3a858259d496d484636f58140e6c5c66f4 Author: Alan Garny Date: Thu Aug 7 16:42:35 2014 +0200 Some minor cleaning up [ci skip]. commit 0b7ca855b956f0db094e6e2649908ff00fe5bc77 Author: Alan Garny Date: Thu Aug 7 10:56:57 2014 +0200 Some minor cleaning up [ci skip]. commit 3915c011dd5ac55dec235dee507623c347c14fb2 Author: Alan Garny Date: Thu Aug 7 10:35:43 2014 +0200 Some minor cleaning up [ci skip]. commit 5a9f9de34d82bd00bc8babf40e6c1716e99549c6 Author: Alan Garny Date: Wed Aug 6 15:46:29 2014 +0200 Some minor cleaning up [ci skip]. commit 713889c8f8d41ad84367bde26e46a6aff650bd74 Author: Alan Garny Date: Wed Aug 6 15:44:01 2014 +0200 Some minor cleaning up [ci skip]. commit 2152ad9f09f4409418f343e00463d5071895448f Author: Alan Garny Date: Wed Aug 6 15:34:44 2014 +0200 New snapshots. commit 3f6675ec7f0a987fcd25806f4cf1330d78736b5e Author: Alan Garny Date: Wed Aug 6 15:13:56 2014 +0200 "Save As" now allows users to name their file as they please (closes #432). commit 3793f82cbe450bf9aba6d33ebc5d1d81e60eb469 Author: Alan Garny Date: Wed Aug 6 15:13:32 2014 +0200 Some minor cleaning up [ci skip]. commit b6233f30d92c31abae48f5e28ba9ca4b6248c565 Author: Alan Garny Date: Sat Aug 2 20:21:45 2014 +0200 Fixed the issue with removing an ontological term associated with a CellML element erasing the list of possible ontological terms (if there was one) (closes #385). commit 105c6dfcb4b9366ba3a117effcafcd8f13a70fdf Author: Alan Garny Date: Sat Aug 2 19:16:53 2014 +0200 Fixed the issue with the wrong message being displayed after adding a term directly and removing it straightaway (closes #310). commit 9207b34fd60a0a31ae1b2a45e00d86d0b6faf500 Author: Alan Garny Date: Sat Aug 2 18:13:28 2014 +0200 Fixed the issue with duplicating and saving a file resulting in its original temporary file name being remembered in the list of recent files (closes #429). commit e8f8ef29f240f7bea6e8277f425d1d9cb005c21e Author: Alan Garny Date: Sat Aug 2 18:07:53 2014 +0200 Some minor cleaning up [ci skip]. commit 50ef4369f8b3609e0bfeaf9d52d0ddf8e989042d Author: Alan Garny Date: Sat Aug 2 18:03:51 2014 +0200 Some minor cleaning up [ci skip]. commit a45fe37c626cdb6065efc5514767869905acdb34 Merge: 39c7acdf0 51b501f06 Author: Alan Garny Date: Sat Aug 2 17:32:00 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 39c7acdf086be5584bb0f395c4eb77ee63c41132 Author: Alan Garny Date: Sat Aug 2 17:31:29 2014 +0200 Fixed the issue with opening a recent file on Windows (closes #430). commit 51b501f060f7b5d097f0b20c24dcb665bcc7ae1c Author: Alan Garny Date: Sat Aug 2 16:58:45 2014 +0200 Updated the user documentation (#428) [ci skip]. commit 02376380f2ffebec77cc7f48802c7ffafe1e279d Author: Alan Garny Date: Fri Aug 1 15:58:23 2014 +0200 Some minor cleaning up [ci skip]. commit 7c1618e608069e106243ad6b82f9244884237709 Author: Alan Garny Date: Fri Aug 1 15:56:33 2014 +0200 Some minor cleaning up [ci skip]. commit 14406995e3c71f6978afe1a03eb2c98812a906d7 Author: Alan Garny Date: Fri Aug 1 11:26:20 2014 +0200 New snapshots. commit a926ab82ad4da1a28210a1a8435d2eff9a52af75 Author: Alan Garny Date: Thu Jul 31 18:49:41 2014 +0200 Some minor cleaning up [ci skip]. commit c763636d79d3ef2dcf196b95b288b6d6fbfb4582 Author: Alan Garny Date: Thu Jul 31 18:43:12 2014 +0200 Functional tests: updated the documentation (#416) [ci skip]. commit 6ea079843c0ed7f1e0ae220d0a411b6ea2e1d2ca Author: Alan Garny Date: Thu Jul 31 18:14:34 2014 +0200 Functional tests: added some models (#416) [ci skip]. commit c453ed7bfd6e9d25b48e381aa499e459d596606a Author: Alan Garny Date: Thu Jul 31 17:40:52 2014 +0200 Fixed the text editor issue that resulted in the replacing all feature looping forever in some cases (closes #426). commit 7e59c1d50cfadc6daee4ccda844769cd93cc8e35 Author: Alan Garny Date: Thu Jul 31 17:21:26 2014 +0200 Fixed the text editor issue that resulted in the replacing all feature looping forever in some cases (closes #426). commit 72923e232af87129872fe1f05f9329ad0a921b1f Author: Alan Garny Date: Thu Jul 31 16:02:43 2014 +0200 Some minor cleaning up [ci skip]. commit 3ddc534abb22281f3ab905317ac46311c2940282 Author: Alan Garny Date: Thu Jul 31 14:16:57 2014 +0200 Some minor cleaning up [ci skip]. commit 5b0662c6add845d54cc9c2339daa4264737abfa8 Author: Alan Garny Date: Wed Jul 30 18:45:54 2014 +0200 Some minor cleaning up [ci skip]. commit b934b696506df2495fbaf1edff0db01caae81df0 Author: Alan Garny Date: Wed Jul 30 18:26:26 2014 +0200 Minor update to our developer documentation [ci skip]. commit 880ce23b9cd7d323662d69c3ccc88393995bcda5 Author: Alan Garny Date: Wed Jul 30 18:04:19 2014 +0200 Fixed an issue with the actions of the Core CellML editing widget not being always initialised (closes #425). commit 6ab999d062a32b9090364f1f69c1034879cd9958 Author: Alan Garny Date: Wed Jul 30 17:50:31 2014 +0200 Keep track of import contents for as long as the model is not reloaded (closes #424). commit 21da2ac02e26a0ed4c395812343c95c1584ec2b4 Author: Alan Garny Date: Wed Jul 30 17:45:47 2014 +0200 Some minor cleaning up [ci skip]. commit 65132d19e1f4c11de384d1d42a721452457d09f8 Author: Alan Garny Date: Wed Jul 30 16:48:50 2014 +0200 Fully instantiate all the imports, if any, of a CellML file only when necessary (closes #423). commit 4166633d1f6289f6c7ab33eabdd73f240cf3b937 Author: Alan Garny Date: Wed Jul 30 16:42:26 2014 +0200 Some minor cleaning up [ci skip]. commit d1a955ccbe0b0c378dce53bf6d26cafa740c7e32 Author: Alan Garny Date: Wed Jul 30 16:35:23 2014 +0200 Some minor cleaning up [ci skip]. commit 4f40e493a1cd16bb0f90a001a9fe9a9cd789312d Author: Alan Garny Date: Wed Jul 30 15:56:15 2014 +0200 Some minor cleaning up [ci skip]. commit a82bf1d0a0b1e1daa167c9ab9c68b5baaf3f1942 Author: Alan Garny Date: Wed Jul 30 14:37:39 2014 +0200 Some minor cleaning up [ci skip]. commit 8732e1180c56f01ceba8fc42cec3824ff118bf02 Author: Alan Garny Date: Wed Jul 30 13:54:18 2014 +0200 Some minor cleaning up [ci skip]. commit d25e6e3486424734bfa091604591529bfb45c99a Author: Alan Garny Date: Tue Jul 29 18:31:55 2014 +0200 New snapshots. commit deab43bc57ff80eaf728180caf234e1af461da20 Author: Alan Garny Date: Tue Jul 29 18:23:59 2014 +0200 Fixed the issue that prevented the CellML Tools plugin from exporting a remote CellML 1.1 file to a given file (closes #422). commit d280a86afe5d901315da49f44b4cf9cfaf2637a3 Author: Alan Garny Date: Tue Jul 29 16:22:16 2014 +0200 Done revisiting our handling of local/remote files (closes #420). commit 9ac581277bc333815ea8ce7063e9b82abd53d542 Author: Alan Garny Date: Tue Jul 29 16:03:35 2014 +0200 Some work on revisiting our handling of local/remote files (#420) [ci skip]. commit 8c0f4d23726937b7bc2f1dcc8f612e00879da375 Author: Alan Garny Date: Tue Jul 29 14:58:17 2014 +0200 Some minor cleaning up [ci skip]. commit 0e17a54473d416334e14ad503f44810a8d664513 Author: Alan Garny Date: Tue Jul 29 14:32:44 2014 +0200 Some minor cleaning up [ci skip]. commit 5895fd40d6279b0acddff7f7e2162a268c68da7f Author: Alan Garny Date: Mon Jul 28 20:36:19 2014 +0200 Fixed an issue with opening a local import in the CellML Annotation view (closes #419). commit 46cf73ac6642e3d9279e0e96c4225a6c90b14128 Author: Alan Garny Date: Mon Jul 28 20:33:18 2014 +0200 Some minor cleaning up [ci skip]. commit d7828abac169a3f0eec5f5762b968f404a865ac2 Author: Alan Garny Date: Mon Jul 28 20:20:16 2014 +0200 Some minor cleaning up [ci skip]. commit 808a1ea169541883d714b6b37f70aff80319cf64 Author: Alan Garny Date: Mon Jul 28 19:54:20 2014 +0200 Some minor cleaning up [ci skip]. commit a80829ffd62e1af6037fbeae2d331f843c3ab7fa Author: Alan Garny Date: Mon Jul 28 19:47:52 2014 +0200 Removed the xml:base value in the example Noble 1962 model (closes #418) [ci skip]. commit d7cfc219de9169b8ae8846c4109449892ce361e2 Author: Alan Garny Date: Mon Jul 28 19:42:50 2014 +0200 Fixed the issue with relative import href URLs not being resolved in the 24 July 2014 snapshot (closes #417). commit c32152e24340d35379eac576f4fe75d862482503 Author: Alan Garny Date: Mon Jul 28 16:00:37 2014 +0200 Some minor cleaning up [ci skip]. commit f1d0ec927435468259d03c05666ac44ff700d3f8 Author: Alan Garny Date: Thu Jul 24 17:48:41 2014 +0200 New snapshots. commit 5e0c512b4d1887b64f5c3a112ae78b97a66c5fa8 Author: Alan Garny Date: Thu Jul 24 17:44:30 2014 +0200 Fixed the issue with the 23 July 2014 snapshot not supporting imports (closes #412). commit af22c829ca1bc0d68771988a13b1646c05e963a4 Author: Alan Garny Date: Thu Jul 24 14:57:23 2014 +0200 Can now access access previous snapshots (closes #414) [ci skip]. Starting from the one from 13 April 2014. commit 2b20034039272ee6d0ec0506bd527f6ec5d750ad Author: Alan Garny Date: Thu Jul 24 14:54:26 2014 +0200 Can now access access previous snapshots (closes #414) [ci skip]. Starting from the one from 13 April 2014. commit 90d025a7d72692418c29dc375b9dcf30cd333581 Author: Alan Garny Date: Thu Jul 24 11:35:32 2014 +0200 Created a functional tests page in the developer documentation (closes #416) [ci skip]. Now, we just need to populate it... commit d6f90c0bb7009f412ba29218c8ce335e07b13932 Author: Alan Garny Date: Thu Jul 24 11:16:39 2014 +0200 Made the titles of information widgets opaque (closes #413). commit 01ea35d3638d770512064d258367b6d8d96ec937 Author: Alan Garny Date: Thu Jul 24 10:34:38 2014 +0200 Some minor cleaning up [ci skip]. commit 1b28184d332a5ed4ac70c845b9dc96165bec6ef2 Author: Alan Garny Date: Wed Jul 23 19:20:59 2014 +0200 Updated the download page [ci skip]. commit 04ddac4ef18fa0a51d3ea0edd48d7ea2cbead3b5 Author: Alan Garny Date: Wed Jul 23 18:59:16 2014 +0200 New snapshots. commit e2773cfb9ccbfdd33bfcf017ee58bb220141ae65 Author: Alan Garny Date: Wed Jul 23 18:54:39 2014 +0200 Now keep track of all the settings in the Single Cell view when reloading a file (closes #409). commit 8ef8b89498686f851f4769e7060af0b00ef5ef94 Author: Alan Garny Date: Wed Jul 23 18:08:27 2014 +0200 Some work on keeping track of all the settings in the Single Cell view when reloading a file (#409) [ci skip]. commit 1ba8e79cde96b59f77cba2fbe3d18a8338f90858 Author: Alan Garny Date: Wed Jul 23 17:13:05 2014 +0200 Fixed the issue that preventing the replace side of the find/replace feature from working properly in the Raw CellML view (closes #410). commit 97aeee2487a0da89cd2f7ea80ff683a48c263e57 Author: Alan Garny Date: Wed Jul 23 16:44:24 2014 +0200 Some minor cleaning up [ci skip]. commit aee0712599ef60fc31c9404a96d7ce15ac2f4e40 Author: Alan Garny Date: Wed Jul 23 15:56:32 2014 +0200 Fixed the issue with find previous/next in the Editor widget (closes #411). commit 76b0d0a3859be2fdf1eafb31327ef8dbc19e5fdb Author: Alan Garny Date: Wed Jul 23 15:53:34 2014 +0200 Some minor cleaning up [ci skip]. commit 0a1634f47b27e875acd643f66aeb19dd7ebc2ed6 Author: Alan Garny Date: Wed Jul 23 14:58:46 2014 +0200 Some minor cleaning up [ci skip]. commit b88243dbbc85c16ba4f525e0ba1e42be7f862363 Author: Alan Garny Date: Tue Jul 22 19:19:11 2014 +0200 Fixed the issue with a deleted file being wrongly added to the list of recent files when closing its tab (closes #408). commit 2c7246f55159d37410709082ad7a0214d1f90fc7 Author: Alan Garny Date: Tue Jul 22 19:08:53 2014 +0200 Some minor cleaning up [ci skip]. commit a00f59f2bb60c2a97b32c05e717965cd869ea517 Author: Alan Garny Date: Tue Jul 22 17:27:13 2014 +0200 Some minor cleaning up [ci skip]. commit 7aecddf72fc8ead39292f28848bd88ae07388d5f Author: Alan Garny Date: Tue Jul 22 16:39:17 2014 +0200 Some minor cleaning up [ci skip]. commit 8f0766aff29414c42ae763739c43a9787729766e Author: Alan Garny Date: Tue Jul 22 15:35:26 2014 +0200 Some minor cleaning up [ci skip]. commit a526eff792671e183c2d1ed1f63f9f0d92e016e5 Author: Alan Garny Date: Tue Jul 22 14:43:41 2014 +0200 Slight improvement to the error message generated by the CellML 1.0 exporter [ci skip]. commit 9bf28e1e63c0f6543183caf0d8506d9797cb20ab Author: Alan Garny Date: Tue Jul 22 14:28:46 2014 +0200 CellML tools: suggest a better file name when exporting a remote file to CellML 1.0 or a user-defined format (closes #407). commit d25a1aaed6fee372ada5205b817f222430e3b803 Author: Alan Garny Date: Tue Jul 22 13:57:48 2014 +0200 Fixed the issue with the plugins directory not being properly set in CLI mode (closes #406). commit a80938bb14978429c042229101a679922012a0c1 Author: Alan Garny Date: Tue Jul 22 13:40:21 2014 +0200 Fixed the issue with the plugins directory not being properly set in CLI mode (closes #406). commit 506fd2b4041f6936ad4214436f04625251495284 Author: Alan Garny Date: Tue Jul 22 13:37:00 2014 +0200 Some minor cleaning up [ci skip]. commit 341a15bd9033887f7599353bc1bf4afb553078d7 Author: Alan Garny Date: Mon Jul 21 19:46:11 2014 +0200 Slight update to the user documentation following our fix for issue #405 [ci skip]. commit 71a841e3a56b06c88028e3480888abad8f3f91ed Author: Alan Garny Date: Mon Jul 21 19:39:41 2014 +0200 Done getting rid of the flickering in the CellML Annotation and Single Cell views (closes #405). commit 26b90fc4773ea70bfe7b416b5715f25ed8848bb4 Author: Alan Garny Date: Mon Jul 21 19:22:49 2014 +0200 Some minor cleaning up [ci skip]. commit 17c12da59fd0cf135f28d4b2ba907f0c7cdb7401 Author: Alan Garny Date: Mon Jul 21 18:45:07 2014 +0200 Some work on reducing the flickering in the CellML Annotation and Single Cell views (#405) [ci skip]. commit 94ac44734738181e0e9266debb28f46b0a32f64d Author: Alan Garny Date: Mon Jul 21 18:05:53 2014 +0200 Some minor cleaning up [ci skip]. commit 61f8178968a45c85f315b2f0b599a0deeccb60cf Author: Alan Garny Date: Mon Jul 21 14:21:07 2014 +0200 Fixed an issue with the viewer that always rendered a valid equation as invalid if subscripts, Greek symbols and digit grouping were disabled (closes #404). commit f864c1778e136e2e154bf5d5780cec0e621c90dc Author: Alan Garny Date: Mon Jul 21 11:57:20 2014 +0200 Fixed the issue with saving a duplicated file resultign in the file being considered locked (closes #403). commit 710fce316b01e4ac1ba73da05d64dd7d436a729e Author: Alan Garny Date: Fri Jul 18 19:59:18 2014 +0200 Removed qStringToConstCharArray() (closes #402). commit 353ee999e1efba032d8fc18487c3935fc5dc15bd Author: Alan Garny Date: Fri Jul 18 19:15:36 2014 +0200 Slight updates to the user documentation [ci skip]. commit dee16595c61afe1e2d0753ae68e5bcd78a69b5c0 Author: Alan Garny Date: Fri Jul 18 19:10:42 2014 +0200 Fixed the issue with some plugin selections crashing OpenCOR on restarting (closes #401). commit 6ea90bbf28a0974d2a666c3e7adbf6d19077b241 Author: Alan Garny Date: Fri Jul 18 18:51:28 2014 +0200 The viewer does now get updated every time we switch files (closes #400). This is what we should have done all along, but ok nevermind… commit 47a8ecb81fe119cefc0baa00e8feb9634ec30132 Author: Alan Garny Date: Fri Jul 18 18:48:14 2014 +0200 Improved our Viewer plugin [ci skip]. commit 388644aac5d13a2451b35b311acbe6e4a0d1c5cc Author: Alan Garny Date: Fri Jul 18 18:41:54 2014 +0200 Some minor cleaning up [ci skip]. commit fd00768140b9b9b863b105fe313c89ac30705f97 Author: Alan Garny Date: Fri Jul 18 16:44:15 2014 +0200 Some minor cleaning up [ci skip]. commit 10512e50e36d07d035349cce8fa135c88538d4fc Author: Alan Garny Date: Fri Jul 18 16:39:13 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself (#399). Also some minor cleaning up [ci skip]. commit 0d456f80b09d694546f409611fc97164dbe640a9 Author: Alan Garny Date: Fri Jul 18 15:34:35 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself (#399) [ci skip]. commit 20c558a6df10a7ab92bf942e44cdf8649ad08b38 Author: Alan Garny Date: Fri Jul 18 15:23:33 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself (#399) [ci skip]. commit 988cd16b0cf779207fbd05102b5a71cc27fecd94 Author: Alan Garny Date: Fri Jul 18 14:04:10 2014 +0200 Revert "Some work on moving some widgets to their own plugin from the Core plugin (#396) [ci skip]." This reverts commit 0ad33124db1962fbbc119b28cf3ddd88dc5d7549. commit 0ad33124db1962fbbc119b28cf3ddd88dc5d7549 Author: Alan Garny Date: Fri Jul 18 13:53:02 2014 +0200 Some work on moving some widgets to their own plugin from the Core plugin (#396) [ci skip]. commit c0fe14d8e81c3e2d90977085fb221906ccc7145f Author: Alan Garny Date: Fri Jul 18 13:11:19 2014 +0200 Some minor cleaning up [ci skip]. commit 746326aa216c8253e3c3189db069156c1fefd1df Author: Alan Garny Date: Fri Jul 18 11:59:49 2014 +0200 Some minor cleaning up [ci skip]. commit d20b7cf22a734beed5f56ebc5b845d8786bf4332 Author: Alan Garny Date: Fri Jul 18 11:05:55 2014 +0200 Travis-CI: use homebrew to install CMake on OS X. commit b7c313ec7eb3e916dc0fa118dca1ed427e426d23 Author: Alan Garny Date: Fri Jul 18 11:03:25 2014 +0200 Travis-CI: use homebrew to install CMake on OS X. Indeed, for some strange reasons, to get the CMake binaries for OS X doesn’t seem to work anymore (see https://travis-ci.org/opencor/opencor/builds/30246404). commit 199eb63732401dc52c7396e3fde2c8e21b0cccb7 Author: Alan Garny Date: Fri Jul 18 10:47:27 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit 8abb37f180c8d4d789f1e1bc957b4025dee05365 Author: Alan Garny Date: Fri Jul 18 10:43:14 2014 +0200 Some minor cleaning up [ci skip]. commit 20c8f53daed3792e2ba0e822bfa7e3ea841e5d36 Author: Alan Garny Date: Fri Jul 18 10:35:33 2014 +0200 All the use of [Enter] to open a file in the file browser/organiser window plugins (closes #398). commit 645395a1776919fc663b3004b746cd2e143ca051 Author: Alan Garny Date: Fri Jul 18 10:26:45 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit 1e2b86eba85153563b222ae9adde3be19c2e2cde Author: Alan Garny Date: Thu Jul 17 19:04:00 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit 94c72855a49c8018125dacf90b7fb029c47e2531 Author: Alan Garny Date: Thu Jul 17 19:01:12 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit d723d0f8240ebc6c2c5d83d122be43db023e2a17 Author: Alan Garny Date: Thu Jul 17 18:40:29 2014 +0200 Remove Qt deprecated code (closes #397). commit 6423ca184ab89fa5d908345019f0784a87c10520 Author: Alan Garny Date: Thu Jul 17 18:14:32 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit c887e8801e829a7525e3c9c5917321e6c3f145dc Author: Alan Garny Date: Thu Jul 17 16:25:28 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit 65d1f2e667feed76ba6c48cc5bddef785d66492a Author: Alan Garny Date: Thu Jul 17 16:10:09 2014 +0200 Some minor cleaning up [ci skip]. commit 568c147025f3e70770f6d92420ba013b2a790aef Author: Alan Garny Date: Thu Jul 17 14:43:50 2014 +0200 Some minor cleaning up [ci skip]. commit 0ab49a782c9868e232578dd4b99d8bc8683932b5 Author: Alan Garny Date: Thu Jul 17 14:10:33 2014 +0200 Some work on the list for CellML warnings/errors (#360) [ci skip]. commit b7cae0346e08b9c1d78004b071457d0c408f1140 Author: Alan Garny Date: Thu Jul 17 13:28:45 2014 +0200 Some minor cleaning up [ci skip]. commit 46e0b9e155fb8dbd67822de218c85ef4500be6d0 Author: Alan Garny Date: Wed Jul 16 18:51:39 2014 +0200 Some work on the Raw CellML view plugin (#16) and the list for CellML warnings/errors (#360) [ci skip]. commit ed96f0a18c4e40043191b3c5c738b8a4541dcb0d Author: Alan Garny Date: Wed Jul 16 18:32:33 2014 +0200 Some work on the list for CellML warnings/errors (#360). commit 2b3aac03c35ec2dc3071ce7b58c24c5be15116cc Author: Alan Garny Date: Wed Jul 16 18:06:13 2014 +0200 Some work on the Raw CellML view plugin (#16) and the list for CellML warnings/errors (#360) [ci skip]. commit 3db3f6ddf3da48b9337e21a5fc123a1d023473ef Author: Alan Garny Date: Wed Jul 16 18:06:00 2014 +0200 Some minor cleaning up [ci skip]. commit 0b34f8fc5c60d28a5562b3589194c1a1cc516e23 Author: Alan Garny Date: Wed Jul 16 16:59:17 2014 +0200 Some work on the Raw CellML view plugin (#16) and the list for CellML warnings/errors (#360) [ci skip]. commit 7e548fd12863835aafa170f9edab455d254d622e Author: Alan Garny Date: Wed Jul 16 16:52:34 2014 +0200 Some minor cleaning up [ci skip]. commit 5af20a0507f8e9f8ee99d2809d715783001c802d Author: Alan Garny Date: Wed Jul 16 16:42:15 2014 +0200 Some work on the Raw CellML view plugin (#16) and the list for CellML warnings/errors (#360) [ci skip]. commit ea5716bc9c18ab6914e8e565003558bd609db9d6 Author: Alan Garny Date: Wed Jul 16 15:10:40 2014 +0200 Some work on the Raw CellML view plugin (#16) [ci skip]. commit f8754fa6537b4137d25de5c64fdbc59d3046d722 Author: Alan Garny Date: Wed Jul 16 14:41:39 2014 +0200 Some minor cleaning up [ci skip]. commit 51bda41cb268786aa746a6cce9bf1a626a3a8ce3 Author: Alan Garny Date: Wed Jul 16 14:36:50 2014 +0200 Some minor cleaning up. commit 63f4420142c018993556fe6bd41dee6fd6a070f9 Author: Alan Garny Date: Wed Jul 16 11:18:12 2014 +0200 Done adding a "CellML Validation" action to the Core CellML editing plugin (closes #361). commit 9ca36ff3f1239e860a7028b2d132e0d6d6126227 Author: Alan Garny Date: Wed Jul 16 11:11:39 2014 +0200 Some minor cleaning up [ci skip]. commit ec1bd1c8902c2843c8efe72b865a7f68a80bcc70 Author: Alan Garny Date: Wed Jul 16 11:06:39 2014 +0200 Some minor cleaning up. commit 42fe5e1d7149532bbcaddbdba06056ec19c511d0 Author: Alan Garny Date: Fri Jul 11 15:58:46 2014 +0200 Done adding a "CellML Validation" action to the Core CellML editing plugin (closes #361). commit be47e2a5db8ca070d32f22acec638200c88d7531 Author: Alan Garny Date: Fri Jul 11 14:24:05 2014 +0200 Some minor cleaning up [ci skip]. commit e8867fd4647add0a3e3764297fdf5bc88373b22a Author: Alan Garny Date: Fri Jul 11 14:21:05 2014 +0200 Some minor cleaning up [ci skip]. commit 1c96ee584e5eacb1a73a6c5cb24ecccdd78c87e5 Author: Alan Garny Date: Fri Jul 11 13:12:50 2014 +0200 Can now undo/redo changes that have been changed through the Core editing plugin (closes #395). commit ce263d93a62a1f274d09ddb384e2fc4d83eae762 Author: Alan Garny Date: Fri Jul 11 11:45:32 2014 +0200 Fixed the issue with modifying a file outside of OpenCOR resulting in being asked for it to be reloaded (closes #394). commit 63096d7e8eb9f800bf377d45a6529dc19966a18a Author: Alan Garny Date: Fri Jul 11 10:53:19 2014 +0200 Had forgotten to update our Pretty CellML view plugin [ci skip]. commit 38d4f59470236dd1536b24a44ed9c73c75cabd1a Author: Alan Garny Date: Fri Jul 11 09:21:06 2014 +0200 Some minor cleaning up [ci skip]. commit 11dba7d9096711f18c164b7f5f507a5cc535fcc1 Author: Alan Garny Date: Thu Jul 10 20:03:41 2014 +0200 Fixed the issue with a model requiring an NLA solver having its properties wrongly set in the Single Cell view (closes #393). commit 7031be023e93f38a144bc6ce2b609e2ac9222ec7 Author: Alan Garny Date: Thu Jul 10 19:17:31 2014 +0200 Updated the user documentation (#377) [ci skip]. commit 14b6cc7b4148b7d04cbb8c2263a4893ca58d4334 Author: Alan Garny Date: Thu Jul 10 17:17:51 2014 +0200 Improved the file name that we show in the information panel of the Single Cell view plugin (closes #392) [ci skip]. commit a8881abca9c99c640097fba3bb23eaddbcdb4626 Author: Alan Garny Date: Thu Jul 10 14:26:00 2014 +0200 Some minor cleaning up [ci skip]. commit db31519843e4c7e8c772bed6916ab711499dde07 Author: Alan Garny Date: Thu Jul 10 11:29:52 2014 +0200 Improved the file name that we show in the information panel of the Single Cell view plugin (closes #392). commit e051ca4620ffc770dba87083a308cfc0df865614 Author: Alan Garny Date: Thu Jul 10 11:22:19 2014 +0200 Some minor cleaning up [ci skip]. commit a7a5ec7a59e5e058ea857cd11efc2aeba1cf715a Author: Alan Garny Date: Wed Jul 9 14:28:48 2014 +0200 Some minor cleaning up [ci skip]. commit 09de0feba8dce291928dc47f916fc715cbeaad8f Author: Alan Garny Date: Wed Jul 9 14:03:04 2014 +0200 Some minor cleaning up [ci skip]. commit d93602cc0c4fc127aeea7812a4823f44ba9fc01c Author: Alan Garny Date: Wed Jul 9 12:59:23 2014 +0200 Done with making it possible to run very long simulations (closes #391). commit 83484cba75b2dee79cad00e8b31bf7bb4b0a967b Author: Alan Garny Date: Wed Jul 9 11:37:26 2014 +0200 Fixed an issue with Core::setFocusTo() [ci skip]. commit 5409be74c4e6f66e981b30b7168243250320dbf8 Author: Alan Garny Date: Tue Jul 8 18:52:03 2014 +0200 Slight change to our compiler plugin [ci skip]. This is the result of fixing a small Xcode building issue (see https://github.com/opencor/opencor/commit/6161ff7ee75c094f7f98dcf75221de 4534671d01). The difference is that here we don’t ask for LTO since our compiler plugin effectively compiles only one file… commit 7a969f60f8fd04ea7072c0c88195a613db6e4cbb Author: Alan Garny Date: Tue Jul 8 18:18:02 2014 +0200 Reverting some code that got committed by mistake [ci skip]. commit 7f07c97eab737f907a1ca74b5a811b93b5e05620 Author: Alan Garny Date: Tue Jul 8 18:12:20 2014 +0200 Minor cleaning up of our Travis-CI script. commit 4ba557bf5eefbc842df39f8afbe7736ea9d2b629 Author: Alan Garny Date: Tue Jul 8 17:56:42 2014 +0200 Minor cleaning up of our Travis-CI script. commit 9da17745b4aa2af92500ad1173560b59f1744f20 Author: Alan Garny Date: Tue Jul 8 17:49:04 2014 +0200 Updated our third-party binaries on Linux, now that we use better build flags [ci skip]. In the end, only the LLVM binaries are different. commit 87664362b80b54bb910dee8afca451dac1602795 Author: Alan Garny Date: Tue Jul 8 17:38:19 2014 +0200 Minor cleaning up of our Travis-CI script. commit 6ceaa9bd419d140c93cb024430c81b1551ff6204 Author: Alan Garny Date: Tue Jul 8 17:30:49 2014 +0200 Minor cleaning up of our Travis-CI script. commit 7c662b24b2215638c015752b28fcbbedf6ea0f3f Author: Alan Garny Date: Tue Jul 8 17:29:39 2014 +0200 Minor cleaning up of our Travis-CI script. commit e23f29def708eb2d0b769bd487ee08fe3d609267 Author: Alan Garny Date: Tue Jul 8 17:22:12 2014 +0200 Use GCC 4.8 on Travis-CI. Indeed, Travis-CI uses Ubuntu 12.04 LTS, which comes with a version of GCC that is older than 4.7 and therefore doesn’t support -std=c++11 (but -std=c++0x). commit 59ec574196673372ec95a7c8d3d6822e7ab274c8 Author: Alan Garny Date: Tue Jul 8 16:56:40 2014 +0200 Updated our third-party binaries on OS X, now that we use better build flags [ci skip]. commit 6161ff7ee75c094f7f98dcf75221de4534671d01 Author: Alan Garny Date: Tue Jul 8 16:33:07 2014 +0200 Fixed a small Xcode building issue [ci skip]. Xcode considers -O4 and -O3 to be equivalent and therefore generates a warning (and therefore an error in our case). Indeed, from Xcode 5.1, -O4 doesn’t imply LTO anymore, hence our ‘fix’. commit d9e1d1eab8d52506da4a28eed3eec1b0c5362da7 Author: Alan Garny Date: Tue Jul 8 16:08:29 2014 +0200 Updated our third-party binaries on OS X, now that we use better build flags [ci skip]. commit bf0f294159d204adb501da15a5e9f06288230c8c Author: Alan Garny Date: Tue Jul 8 15:46:37 2014 +0200 Optimise the build on Linux and OS X (as well as using LLVM/Clang). commit 914ddc869cef8d6eed225177c2296bb92bb0bc2e Author: Alan Garny Date: Tue Jul 8 15:00:40 2014 +0200 Make sure that we are using the compiler we support [ci skip]. commit aa4538ea910205291959d3508d8ea8f54dc055df Author: Alan Garny Date: Tue Jul 8 14:43:34 2014 +0200 Some minor improvement to our Windows packaging script [ci skip]. commit 33d57d52cfd5da85d701132edc53be7da2d4da42 Author: Alan Garny Date: Tue Jul 8 11:32:12 2014 +0200 Some minor cleaning up [ci skip]. commit c4df4ab7cd02f5123b21f484837cda12f747818d Author: Alan Garny Date: Tue Jul 8 11:31:35 2014 +0200 Some minor cleaning up [ci skip]. Created a function to convert a QString to a const char *, and used it in our QScintilla support plugin. commit 34f0de717e7d004a4be3a934f77e456f9648a140 Author: Alan Garny Date: Tue Jul 8 11:30:10 2014 +0200 Some minor cleaning up [ci skip]. Replaced calls to qPrintable(QString) with calls to QString::toStdString(). commit aafe239c589341be19dfafd9f55e45dda1e49513 Merge: aa4f57560 81183755e Author: Alan Garny Date: Mon Jul 7 15:51:51 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit aa4f57560c5f04081e9ba48c42efbac9afbff7a2 Author: Alan Garny Date: Mon Jul 7 15:51:29 2014 +0200 CellML support: slight improvement to our file runtime class. commit 81183755ed89aef1111f0a4831082d6cba7b3dc5 Author: Alan Garny Date: Mon Jul 7 14:51:42 2014 +0200 Travis-CI: it would seem that the PPA now offers libcupsprintersupport.so. commit 35e87def7afdda11083e96c19895b3151f31fe03 Author: Alan Garny Date: Mon Jul 7 14:42:00 2014 +0200 Some minor cleaning up [ci skip]. commit 45b7d5290e329d1f929a3076f3cde95ef34b7797 Author: Alan Garny Date: Mon Jul 7 11:05:25 2014 +0200 Fixed the issue about a deleted file continuously prompting for the file to be closed (closes #384). commit 777f58f496fc7404b96836d0d456928f51de1a60 Author: Alan Garny Date: Mon Jul 7 10:52:51 2014 +0200 Some minor cleaning up [ci skip]. commit 65601b7ace82718ee333af4b1441387e41e6932e Author: Alan Garny Date: Mon Jul 7 10:51:37 2014 +0200 Some minor improvement to our file manager [ci skip]. commit 77b4b61970e993c11b685f2ea76652b2b478235e Author: Alan Garny Date: Mon Jul 7 09:38:11 2014 +0200 Some minor improvement to our file manager [ci skip]. commit cc0d404686ea7e501f0fcbe31eef647cba5a31c8 Author: Alan Garny Date: Fri Jul 4 15:31:16 2014 +0200 Some minor cleaning up [ci skip]. commit 03d834873a5335ad9fe4c7d11a1f8febaac96058 Author: Alan Garny Date: Fri Jul 4 15:23:21 2014 +0200 Some work about a deleted file continuously prompting for the file to be closed (#384) [ci skip]. commit 8790b2accdb67a9c67ba88504b68569959d672f6 Author: Alan Garny Date: Fri Jul 4 14:25:51 2014 +0200 Some minor refactoring of our file manager [ci skip]. commit f1d8518af973c78496ac84709c22db9f4834e375 Author: Alan Garny Date: Fri Jul 4 14:22:42 2014 +0200 Some minor refactoring of our file manager [ci skip]. commit 6d20fd767105c14310cfd50c57e36d23ebd98919 Author: Alan Garny Date: Fri Jul 4 14:04:35 2014 +0200 CellML Annotation view: slight improvement to the retrieval of possible ontological terms. commit 82dff18b715c7965468ccc2d2f876e1d70fc4de1 Author: Alan Garny Date: Fri Jul 4 13:42:30 2014 +0200 Some minor cleaning up [ci skip]. commit bb773621f4cc97d5e0439207f6f3e418aa0fcb6a Author: Alan Garny Date: Fri Jul 4 12:51:58 2014 +0200 Done making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms (closes #333) [ci skip]. commit eb1f5e164cc45ea25010228653f709b35f382ef0 Author: Alan Garny Date: Fri Jul 4 11:46:41 2014 +0200 Done making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms (closes #333). commit 674c8d2a4eb27591fb9fb4044385c41c5ea864e3 Author: Alan Garny Date: Fri Jul 4 11:30:32 2014 +0200 Some minor cleaning up [ci skip]. commit 2f8466147fe224dd8dc1794a77f9e4977d5b9ba8 Author: Alan Garny Date: Fri Jul 4 00:43:27 2014 +0200 Minor update to our Travis-CI script. commit e09e8ec6194a7b15609bc6820a11685d336c26b3 Author: Alan Garny Date: Thu Jul 3 19:08:39 2014 +0200 Fixed the issue with the CellML Annotation view supporting both the editing and CellML editing interfaces (closes #389). commit 88abeaf0c9ab18eabe3bee1c9a871019e639db7e Author: Alan Garny Date: Thu Jul 3 18:55:03 2014 +0200 Fixed the issue about being able to create a new file only if there is already one that is opened (closes #388). commit ccfcd91587c557f1155f8e95a323068ac4713104 Author: Alan Garny Date: Thu Jul 3 18:53:34 2014 +0200 Some minor cleaning up [ci skip]. commit 153e5e9fc5b409b1b0f4d5c9227c8e9776aecdfa Author: Alan Garny Date: Thu Jul 3 17:03:37 2014 +0200 Some minor cleaning up [ci skip]. commit c2c464520e5cf3696017b8cbd656961ad0d95014 Author: Alan Garny Date: Thu Jul 3 16:35:29 2014 +0200 Done with a temporary solution to get our Linux build to work on Travis-CI. We are using ppa:beineri/opt-qt531, but that PPA misses /opt/qt53/plugins/printsupport/libcupsprintersupport.so, so we are getting off the OpenCOR website. This is clearly a temporary solution until, hopefully, the PPA author makes /opt/qt53/plugins/printsupport/libcupsprintersupport.so available in his PPA… commit 68481709867b64f5d896d387958f918193312dc5 Author: Alan Garny Date: Thu Jul 3 16:27:24 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 5659ebaa00c04f8f4db0873a45c3f22a48e3594b Author: Alan Garny Date: Thu Jul 3 16:21:02 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 735945f1708f60b4202a34bc21d17d0cb63a32d4 Author: Alan Garny Date: Thu Jul 3 16:15:53 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 8a9be7f0980b998cd7d8f196bc392f649ba41d30 Author: Alan Garny Date: Thu Jul 3 15:52:08 2014 +0200 Done upgrading QScintilla from version 2.8.2 to version 2.8.3 (closes #387). commit 50e07039925636f6f4d83bcdc062af8957eb432e Author: Alan Garny Date: Thu Jul 3 15:39:53 2014 +0200 Some minor cleaning up in the README.txt for our third-party plugins [ci skip]. Indeed, we don’t need to ‘package’ on OS X, now that we have improved our building process. commit b704052f0fb9e38661b03c0a56c4026f4f0180ec Author: Alan Garny Date: Thu Jul 3 15:31:50 2014 +0200 Some work on upgrading QScintilla from version 2.8.2 to version 2.8.3 (#387) [ci skip]. commit 6db924f21b275592230d20f1966e6e536a27ec88 Author: Alan Garny Date: Thu Jul 3 15:20:06 2014 +0200 Fixed the issue with applying changes in the plugins window resulting all the user settings being reset (closes #386). commit ce4d1b9e8515f7ab845494ce31ca42dc47479ccd Author: Alan Garny Date: Thu Jul 3 14:50:03 2014 +0200 Some work on making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms (#333) [ci skip]. Updated the user documentation. commit 3673f3799ef95911f97299d4005b417505d55ea7 Author: Alan Garny Date: Thu Jul 3 11:32:26 2014 +0200 Some work on making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms (#333). This is all done, we are just waiting the PMR2/Ricordo feature to be deployed, hence we are currently using http://staging.physiomeproject.org/pmr2_ricordo/miriam_terms/ rather than https://models.physiomeproject.org/pmr2_ricordo/owlterms/ at the moment. commit 29183b05d44075bfde54535e05e6d38e297a10b4 Author: Alan Garny Date: Wed Jul 2 17:39:29 2014 +0200 Some minor cleaning up [ci skip]. commit 97a2704202cf7c20c1998d2c0d93e5d4835d8afc Author: Alan Garny Date: Wed Jul 2 17:08:51 2014 +0200 ontological term associated with a CellML element used to erase the list of possible ontological terms (if there was one) (closes #385) [ci skip]. commit d0400b127565d6beee254a1b82e14bc4936f356c Author: Alan Garny Date: Wed Jul 2 17:04:04 2014 +0200 ontological term associated with a CellML element used to erase the list of possible ontological terms (if there was one) (closes #385). commit afa924c4af6a1cf91257ccc6149b4061aaadd35b Author: Alan Garny Date: Wed Jul 2 14:48:38 2014 +0200 Slight update to the user documentation [ci skip]. commit 1f44bcf56833b15377ec02e26d22bfa0780d302a Author: Alan Garny Date: Wed Jul 2 14:15:17 2014 +0200 Can now once again run OpenCOR from Qt Creator on Windows [ci skip]. Indeed, now that we are using QCoreApplication::setLibraryPaths(), we need to provide the debug version of the Qt plugins (when building in debug mode of course, otherwise we need the release version of those files). commit 487375ff5a08335bd404843097764cc0a832fd67 Merge: 74062e70f 6b5027cb9 Author: Alan Garny Date: Wed Jul 2 11:14:48 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 74062e70f2b48c376346921263c72a1cea953517 Author: Alan Garny Date: Wed Jul 2 11:14:14 2014 +0200 Improved the way we determine/retrieve the plugins directory [ci skip]. As a result, we can once again run OpenCOR from Qt Creator (from Linux at least since we are still having a problem on Windows with the Qt platform plugin "windows" not being found). On OS X, it hadn'\''t stopped working since it'\''s a bundle. Otherwise, the reason it stopped working is because of our use of QCoreApplication::setLibraryPaths(). commit 6b5027cb927a215c7962e753a511fd8a85e38e2d Author: Alan Garny Date: Wed Jul 2 10:20:13 2014 +0200 Slight updates to the developer documentation [ci skip]. commit 9636dcae99e36fa6cb7f87f8c09017c9c38e95be Author: Alan Garny Date: Tue Jul 1 20:02:55 2014 +0200 Linux builds are still '\''broken'\'' on Travis-CI, so reverting. We basically need the print support plugin in ppa:beineri/opt-qt531. commit 43a677de5adf0012a2e745056e7896317468f755 Author: Alan Garny Date: Tue Jul 1 19:53:31 2014 +0200 Checking whether our Linux builds are still '\''broken'\'' on Travis-CI. commit 844b6d5548d582f69b0ea54e36755a5e48f09ffb Author: Alan Garny Date: Tue Jul 1 19:46:43 2014 +0200 Slight change to the way we deploy OpenCOR on Windows, now that we use QCoreApplication::setLibraryPaths(). Basically, the platforms plugin is now located under plugins as it should always have and like all the other Qt plugins. commit e91a8f5326bbcb87edb3e8a4efc78db4c619fa70 Author: Alan Garny Date: Tue Jul 1 19:17:09 2014 +0200 Now that our tests are run using QT_GUILESS_MAIN(), we shouldn'\''t need to run them using the offscreen platform. commit 06a70c6adbe6561b647d405aef89e6733807d11d Author: Alan Garny Date: Tue Jul 1 19:15:12 2014 +0200 Don'\''t rely on qt.conf anymore to know where to get Qt plugins from [ci skip]. This was specific to Linux and OS X. Now, we rely on QCoreApplication::setLibraryPaths(). Otherwise, also cleaned up / improved various things in src/main.cpp. commit 62faa7d97cf5be050e1674a9066875754555514c Author: Alan Garny Date: Tue Jul 1 19:02:31 2014 +0200 Argh, committed too much in the previous commit [ci skip]! commit 7b2e5a2e0b21caab4cbd742897b77903b9ecd88b Author: Alan Garny Date: Tue Jul 1 18:59:06 2014 +0200 Moved settings constants in their own headers [ci skip]. commit b83de26aac89c04f7cbb3bfe500c11741eed5b38 Author: Alan Garny Date: Tue Jul 1 18:56:00 2014 +0200 Fixed a small memory leak [ci skip]. commit 37a7ee790f8cc5ea0c455b2fb179a5ff1c5cfeb6 Author: Alan Garny Date: Tue Jul 1 14:28:39 2014 +0200 Improved the SingleCell plugin by not resetting the view'\''s settings when reloading a file (closes #378). commit 621d09e16038006320db747c045bdf1fbc01cdb4 Author: Alan Garny Date: Tue Jul 1 13:58:12 2014 +0200 Trying to avoid the “QCoreApplication::applicationFilePath: Please instantiate the QApplication object first” on OS X in Travis-CI. commit a9e41db488502eea02080b274bee910bb18d47d9 Author: Alan Garny Date: Tue Jul 1 13:39:06 2014 +0200 Trying to avoid the “QCoreApplication::applicationFilePath: Please instantiate the QApplication object first” on OS X in Travis-CI. commit 9db90ffd9219bd0a2a6552a48f0453e42204e243 Author: Alan Garny Date: Tue Jul 1 13:22:33 2014 +0200 Fixed a small issue with an external change to a file resulting in two dialog boxes if the file is modified (closes #382). commit 481637af7533dc5521ebf63e1ea61c5a551773d2 Author: Alan Garny Date: Tue Jul 1 13:18:27 2014 +0200 Fixed the issue with 2+ external changes to a file resulting in the user being prompted twice for its reloading (closes #379). commit 8346e753af1f5e635f860f26bbd30ca8b23339ad Author: Alan Garny Date: Tue Jul 1 13:09:37 2014 +0200 Some minor cleaning up [ci skip]. commit 7542dbf92198f54fc218744c68c6d3c2e9de7149 Author: Alan Garny Date: Tue Jul 1 00:29:58 2014 +0200 Trying to optimise our Travis-CI script. The idea is that if something fails, then we don'\''t do the rest. commit d5b20032f785b4779b91c5d970b787a5575a01fe Author: Alan Garny Date: Tue Jul 1 00:19:57 2014 +0200 Done with getting the OS X build to succeed again on Travis-CI. In the end, the issue was that our new tests strategy requires deploying (and cleaning up) various Qt plugins. Now, the problem when installing Qt 5 with brew, the resulting Qt 5 files had a 444 right accesses, which means that we couldn'\''t clean them, etc. So, the solution was simply to change their right accesses to 755, but I hadn'\''t realised that /usr/local/opt/qt5 is actually a symbolic link, so we can'\''t change right accesses on it and instead we need to change them on /usr/local/opt/qt5/*. From there, everything'\''s fine! commit cc60f4543c76e6386dc3d7578bbcff581967d27f Author: Alan Garny Date: Mon Jun 30 23:16:54 2014 +0200 Finally got the OS X build to succeed again on Travis-CI. So, one final test to make sure that I got things right. commit fd8697d78eda85795146a6f12c7427b4637baa2a Author: Alan Garny Date: Mon Jun 30 22:47:18 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit e193da4634200df5e2e338b6c9fa5a247424604e Author: Alan Garny Date: Mon Jun 30 22:27:53 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit ce75524e7f5164deddc109703b2f98021600fe74 Author: Alan Garny Date: Mon Jun 30 22:08:51 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 95651010246a677a8dd24f424b141085d997b4c6 Author: Alan Garny Date: Mon Jun 30 21:48:47 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit bcfff4124a440782ec4af067d6b71194cd87ccde Author: Alan Garny Date: Mon Jun 30 21:13:17 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 12b3aeea78f45079d9dba9227fb5a53c35a6c5ad Author: Alan Garny Date: Mon Jun 30 20:41:54 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit e95e092ee7b28bf745ca81dc6853b503817a8e85 Author: Alan Garny Date: Mon Jun 30 20:23:07 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 27a1d1aa1ef5ca85dccfea6aac2328683d3008ac Author: Alan Garny Date: Mon Jun 30 19:04:43 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 3a21e73b1d90087334c92cd9ed5813849f8a5952 Author: Alan Garny Date: Mon Jun 30 16:04:01 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 032fa35f3494df8f5161d3156d8f8c5f64082d8b Author: Alan Garny Date: Mon Jun 30 15:55:33 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit a89599cf6e365edfeaee3cdb5afb3a950dc46d36 Author: Alan Garny Date: Mon Jun 30 15:46:38 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit a3bc48ed7087773457a5e356b0ab9f8045b2cf72 Author: Alan Garny Date: Mon Jun 30 15:38:17 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 93c7d7fc779eff8d345a425a5e472ea15739b676 Author: Alan Garny Date: Mon Jun 30 15:26:11 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 12fff76a5825226f706bd89e1dafb5c75718126c Author: Alan Garny Date: Mon Jun 30 15:22:41 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 0da185600fe05aa31e043fddf15dd242e7bd1ce7 Author: Alan Garny Date: Mon Jun 30 14:48:02 2014 +0200 Ping pong game! The qxcb plugin is of no use when testing OpenCOR on Travis-CI. We need the offscreen plugin. So, in the end, we should probably copy all the Qt plugins to build/plugins and ensure that all plugins are available on Travis-CI (thinking about the cupsprintersupport plugin here) [ci skip]. commit 761ab0f72bf690354ef394e58857aaaccd36dc02 Author: Alan Garny Date: Mon Jun 30 14:30:04 2014 +0200 Argh, we need the qxcb plugin to test OpenCOR on Linux! commit 603f9a2f6bd7c286145414c6dd40aa44b9f61584 Author: Alan Garny Date: Mon Jun 30 14:06:06 2014 +0200 Oops, forgot that our tests are now located somewhere else! commit cfeb7c008fb8d78183c334a3a08476a62b041a17 Author: Alan Garny Date: Mon Jun 30 13:58:27 2014 +0200 We don'\''t actually need the Qt plugins to test OpenCOR! commit 036ba5febba936c5ea6d377c68ee0d5016e3b981 Author: Alan Garny Date: Mon Jun 30 13:45:24 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit dfe1650833da63c58037e1bfd3bf532c066e7453 Author: Alan Garny Date: Mon Jun 30 13:41:32 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit a78c2af69df951bd29b7db6887982a628dc30df4 Author: Alan Garny Date: Mon Jun 30 13:39:13 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit 3bebe32b81e24c6271206bacda6612ac2ccb8bb5 Author: Alan Garny Date: Mon Jun 30 13:25:44 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit 88705ad19105a0cb813314c86728c1d10826ae75 Author: Alan Garny Date: Mon Jun 30 13:15:26 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit 242cd14c880fadd37c1d8c429da30439a9a88824 Author: Alan Garny Date: Mon Jun 30 13:07:17 2014 +0200 Minor updates to our developer documentation [ci skip]. commit 0cdcbe9d082a8fc9eb2f42b4fcd29d4dc3d8e2a4 Author: Alan Garny Date: Mon Jun 30 11:53:20 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit d13b7e185f6077d0607bc7bb6d815b1207d0ddfc Author: Alan Garny Date: Mon Jun 30 11:46:03 2014 +0200 Trying to find out why Travis-CI cannot copy "/opt/qt53/plugins/printsupport/libcupsprintersupport.so" to "/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so". commit a70c1ede9014e0e5b52e3b90bd5216114338529f Author: Alan Garny Date: Sun Jun 29 18:48:40 2014 +0200 Fixed the issue with the math element of a CellML equation not getting properly cleaned up in the Raw CellML view (closes #381). commit 3441431a1a6060ece13606f3d7e0816ad3b30948 Author: Alan Garny Date: Sun Jun 29 18:03:30 2014 +0200 Fixed an issue with deploying third-party libraries on Windows [ci skip]. commit 73101ac2d199695e1c5519708a78d9bab11a2491 Author: Alan Garny Date: Fri Jun 27 20:49:42 2014 +0200 Some minor cleaning up [ci skip]. commit b545342aaa29ce3526bb86720d239edf51ba366f Author: Alan Garny Date: Fri Jun 27 19:22:41 2014 +0200 Continue revising our testing strategy when it comes to CMake (on Linux) [ci skip]. commit 3fd024424fe3196c4422868c743f7f7c354e1062 Author: Alan Garny Date: Fri Jun 27 19:07:27 2014 +0200 Some minor cleaning up [ci skip]. commit ef9055af86c6056c4ef8157a29d0e7845c29e9be Author: Alan Garny Date: Fri Jun 27 18:19:20 2014 +0200 Continue revising our testing strategy when it comes to CMake (on Windows) [ci skip]. commit 7adbe9b4ab3cbe44ef5dedd780659c0fe1ad904d Author: Alan Garny Date: Fri Jun 27 18:18:40 2014 +0200 Some minor cleaning up [ci skip]. commit 91b96d1730c18cfceca2f67e55229be0e802f1ff Author: Alan Garny Date: Fri Jun 27 17:33:03 2014 +0200 Continue revising our testing strategy when it comes to CMake (on Windows/Linux this time). Also some minor cleaning up (for OS X). [ci skip] commit 5f74728e2e23f0ecdc03f64a400388eb5ebf5160 Author: Alan Garny Date: Fri Jun 27 17:09:42 2014 +0200 Improved our building process with Xcode. Also revised our testing strategy when it comes to CMake. [ci skip] Regarding our testing strategy, it works fine on OS X, but it now need to be tested (and, most likely, fixed) on Windows and Linux. commit deba7a1ba2e2eba375c7feb89924abda7433810c Author: Alan Garny Date: Fri Jun 27 14:00:12 2014 +0200 Fixed some minor issues reported by Xcode [ci skip]. commit 1fff6f0cd4454e4d7b30796e5908b9a80beb1e4f Author: Alan Garny Date: Fri Jun 27 11:30:51 2014 +0200 Some work on checking packaging now that we use Qt 5.3.x (#376) [ci skip]. commit 4c40b004d6e67a1d12d2b1aa1112b6c85882c74d Author: Alan Garny Date: Fri Jun 27 10:32:51 2014 +0200 Some work on checking packaging now that we use Qt 5.3.x (#376) [ci skip]. commit 8461bfb41c8d71c97c98c943c632bfa4c712a950 Author: Alan Garny Date: Thu Jun 26 17:49:08 2014 +0200 Some minor cleaning up [ci skip]. commit cc00c8b509dee4db302d18b0fff7f3b1b68a657a Author: Alan Garny Date: Thu Jun 26 16:04:16 2014 +0200 Some minor cleaning up [ci skip]. commit 9d4b1831ec6d2259d7786ab8e9d53e538cd63934 Author: Alan Garny Date: Thu Jun 26 15:53:30 2014 +0200 Some minor cleaning up [ci skip]. commit 39152bc83e736c5e2ad5c8db52fcd7d846537d68 Author: Alan Garny Date: Thu Jun 26 13:22:08 2014 +0200 Done with upgrading our (third-party) binaries, now that Qt 5.3.1 has been released (closes #380) . The issue with Qt 5.3.1 on Linux has been filed (see https://bugreports.qt-project.org/browse/QTBUG-39859). commit dcfeb1a359372c2f7103ccc76cb0b07fe84b5ef2 Author: Alan Garny Date: Thu Jun 26 10:23:17 2014 +0200 Some work on upgrading our (third-party) binaries, now that Qt 5.3.1 has been released (#380) [ci skip]. There seems to be an issue with the EGL library not being found on Linux. So, right now, we only have new binaries for Windows and OS X. commit 2fdc49e9845846b001cb682542972d3b6369bcd7 Author: David Brooks Date: Thu Jun 26 17:30:25 2014 +1200 Fix typo. commit 622fd706724f687475786c5d541442b175f23e60 Merge: 991f9cbeb 8bc27ce4a Author: David Brooks Date: Wed Jun 25 13:23:04 2014 +1200 Merge branch '\''master'\'' into dataplugin commit 991f9cbebef7c0892d360ab276589f6d748c69d3 Author: David Brooks Date: Wed Jun 25 13:19:25 2014 +1200 Rework CoreDatastore classes to use `double[]` arrays instead of vectors to store data points; pass in the index of where to store a point; and (important) put code directly into the header file. These changes half the execution time compared to the initial implementation. commit 8bc27ce4a7a0e939c27376be7b7f383f716201eb Author: Alan Garny Date: Sat Jun 21 18:38:40 2014 +0200 Trying a different way to handle qt.conf [ci skip]. The reason is that on Linux (Ubuntu 14.04 LTS at least), qt.conf doesn’t seem to be recognised, meaning that OpenCOR can’t load xcb. Anyway, we here use the first option mentioned at http://qt-project.org/doc/qt-5/qt-conf.html. commit f7918c44d89df1d87ecae39210c2585a42c5dded Author: Alan Garny Date: Sat Jun 21 18:37:45 2014 +0200 Some minor cleaning up [ci skip]. commit 769316f51c3ebeb0edbb25951e4d2c9fa303cd66 Author: Alan Garny Date: Sat Jun 21 15:24:42 2014 +0200 Minor cleaning up of our main and common CMake files [ci skip]. commit 75b22c3765c6a8f4772f3bdcef3689d96dd943f0 Author: Alan Garny Date: Fri Jun 20 19:42:37 2014 +0200 Some minor cleaning up of our CMake files. commit 16ba26a574f4397b9cf22f82ebc3403256f467e6 Author: Alan Garny Date: Fri Jun 20 19:28:39 2014 +0200 Some minor cleaning up of our CMake files. commit 536acf62a9c41ee0a41d2858361776f339dabf9f Author: Alan Garny Date: Fri Jun 20 19:00:20 2014 +0200 Some minor cleaning up of our CMake files [ci skip]. commit 60238aaf304367f2fb1874751311bcec0100c2d8 Author: Alan Garny Date: Fri Jun 20 18:57:10 2014 +0200 Revert "Some minor cleaning up of our CMake files [ci skip]." This reverts commit 8e76fec7c484d6928175c442d90a4fcf13df80d2. commit 8e76fec7c484d6928175c442d90a4fcf13df80d2 Author: Alan Garny Date: Fri Jun 20 18:56:02 2014 +0200 Some minor cleaning up of our CMake files [ci skip]. commit b61226e6c35256d60dd16daf50a86a3d8fa9b9f4 Author: Alan Garny Date: Fri Jun 20 17:53:30 2014 +0200 Slight improvement to our ADD_PLUGIN() CMake macro [ci skip]. commit 2845a3a82ec877dcb98e0dae6b7ab411d63a0315 Author: Alan Garny Date: Fri Jun 20 17:51:04 2014 +0200 Some minor cleaning up. commit 016e8a8166bc8d26a68e4318cfeab8b3cec0a789 Author: Alan Garny Date: Fri Jun 20 17:15:43 2014 +0200 Some work on adding a list to the Core CellML editing plugin (#360). commit 0382695d915c08683f54b4d7263b20269277dc3b Author: Alan Garny Date: Fri Jun 20 16:08:19 2014 +0200 Some minor cleaning up [ci skip]. commit b1c105e865f15215956ca41d3e5212c6834a346d Author: Alan Garny Date: Fri Jun 20 15:26:46 2014 +0200 Done remember which modes/views are selected when no files are opened (closes #366). commit ef19576ca7e4300e6548e73341599b895dd285a8 Author: Alan Garny Date: Fri Jun 20 15:04:58 2014 +0200 Some minor cleaning up [ci skip]. commit 013a46c51ecfe8df608cc619d3c41977ee0fd25d Author: Alan Garny Date: Fri Jun 20 14:03:30 2014 +0200 Only allow the master branch to be built by Travis-CI [ci skip]. commit aeae726a8e4c85ee277c400cc8f6199b96268b0e Author: Alan Garny Date: Fri Jun 20 13:46:22 2014 +0200 Slight update to our user documentation [ci skip]. commit 8de8f59ee45fc89879f5a4836b4717dd08629172 Author: Alan Garny Date: Fri Jun 20 13:25:37 2014 +0200 Packaging now accounts for the fact that Qt is now at version 5.3.0 (closes #375) [ci skip]. commit 6822165d5d4767d53adb3f46c0fa48c98d6b5b6d Author: Alan Garny Date: Fri Jun 20 11:51:24 2014 +0200 Can properly show itself on Linux and OS X (closes #126) [ci skip]. This was an issue with Qt, but this got fixed in Qt 5.3.0 and is now working fine on both Linux and OS X. commit 2fab053bb28882a37c5871d0ae0e9ec88ee9bf6a Author: Alan Garny Date: Fri Jun 20 11:25:38 2014 +0200 Ok, done with our Travis-CI script! commit 8ef057c83f3a63f358cf9fbbe5797e460c7841f1 Author: Alan Garny Date: Fri Jun 20 11:22:36 2014 +0200 Argh, in fact, it was bc that wasn'\''t available! commit 0430bc56722981e7677fee20ad227370ea51d301 Author: Alan Garny Date: Fri Jun 20 11:14:57 2014 +0200 Argh, it would seem that we really need to export PROCS in our Travis-CI script. commit 3d1211459110f16cea3b33a3eaf3d2b96e7fd12e Author: Alan Garny Date: Fri Jun 20 11:10:18 2014 +0200 Just for testing since the Linux builds don'\''t work anymore on Travis-CI. commit 0481255290df68567cd6ab2a68a89fb702bc0b88 Author: Alan Garny Date: Fri Jun 20 10:50:35 2014 +0200 Slight improvements to our Travis-CI script. Some Linux builds would fail because we were trying to use the maximum number of virtual CPUs while we probably ought to use the maximum number of physical CPUs. commit a91f1fa38e4b258c89a721a8b344a0b963f74b0e Author: Alan Garny Date: Fri Jun 20 10:25:37 2014 +0200 Done with IDASetStopTime() in the IDA plugin (closes #374). commit d16fbc98dd1d67f3e57bd66c8363d10277b072d6 Author: Alan Garny Date: Fri Jun 20 10:22:56 2014 +0200 Done with IDASetStopTime() in the IDA plugin (closes #374). commit 5041d2c69ca17b54374013662fbdad704b7e7520 Author: Alan Garny Date: Fri Jun 20 10:19:10 2014 +0200 Some minor cleaning up [ci skip]. commit a600edbd01e9a47c7e8cf961ee556eb612d9ff73 Author: Alan Garny Date: Fri Jun 20 10:06:03 2014 +0200 Minor update to our user documentation [ci skip]. commit a807be70c7c1e7c02e8cf9d39b45dd0d984e8cff Merge: 385c67982 dd04b51ae Author: David Brooks Date: Fri Jun 20 08:33:48 2014 +1200 Merge branch '\''master'\'' into dataplugin commit dd04b51aec61318680f01b1389266f58559ea88c Author: Alan Garny Date: Thu Jun 19 15:29:11 2014 +0200 Fixed the issue about not being able to build OpenCOR using Xcode on OS X (closes #373). commit f703f8f7fa97da3b16f174cc3d70784ef7d221bd Author: Alan Garny Date: Thu Jun 19 14:48:53 2014 +0200 Some minor cleaning up [ci skip]. commit 3ab4c1d87c8cc265266c95b6faf59d6bc6e6e27f Author: Alan Garny Date: Thu Jun 19 14:31:11 2014 +0200 Slight improvements to our common CMake file. commit 6eb8ced4f9cc77764b7609ae8cdd80be24d34ae2 Author: Alan Garny Date: Thu Jun 19 13:50:38 2014 +0200 Some minor cleaning up [ci skip]. commit bf371abc1348521483be6adbc00a3e6ed00b1bb7 Author: Alan Garny Date: Thu Jun 19 13:47:44 2014 +0200 Fixed a small issue with our run[tests].bat files [ci skip]. commit 64b057845888b82e507ee561053e953260ebf086 Author: Alan Garny Date: Thu Jun 19 13:47:03 2014 +0200 Some minor cleaning up [ci skip]. commit 385c67982f7a19d34ae05d3622b55df2799b467e Author: David Brooks Date: Thu Jun 19 11:43:52 2014 +1200 Use Qt classes instead of STL for data plugin. commit 5721753a724e78b0df7299539231e340fd7f3f4f Author: David Brooks Date: Thu Jun 19 11:29:47 2014 +1200 Add methods to retrieve a DataVariable'\''s metadata. commit ab23fcf20a3ed478d6bd9f0a7ff6d8dcccbf5518 Author: David Brooks Date: Thu Jun 19 11:28:48 2014 +1200 Allow for uninitialised vectors in simulation results. commit 967439e2ffc0549f2fcf16b693e3048a0ad4f4c5 Author: Alan Garny Date: Wed Jun 18 18:02:29 2014 +0200 Done upgrading LLVM from version 3.4.1 to version 3.4.2 (closes #372). commit 9a2c7580eab59033f71f66dc0bc8469dcc94efd6 Author: Alan Garny Date: Wed Jun 18 17:54:53 2014 +0200 Done upgrading LLVM from version 3.4.1 to version 3.4.2 (closes #372). commit 7d652d462430e33079a487a1b61716331155d9bc Author: Alan Garny Date: Wed Jun 18 15:38:08 2014 +0200 Some minor cleaning up [ci skip]. commit 3470dcade251a24c97bd9255f7b824a0a05b0508 Author: Alan Garny Date: Wed Jun 18 15:34:44 2014 +0200 Some work towards upgrading LLVM from version 3.4.1 to version 3.4.2 (#372) [ci skip]. commit cceba8bcb6cdb0d5b16cca33ff7f931006a75270 Author: Alan Garny Date: Wed Jun 18 11:12:40 2014 +0200 Slight update to the LLVM README.txt file since we now support building OpenCOR with ninja [ci skip]. commit ede2a64836a59a31a2ca88bb23f9dc7286bfde7c Author: David Brooks Date: Wed Jun 18 11:08:32 2014 +1200 CSV export is WIP — remove historical code. commit 47fb30685e70d471826a34559eb0911c43962aa7 Author: David Brooks Date: Wed Jun 18 11:07:48 2014 +1200 Tweak indentation. commit 772eaf3ca6290efd178c8779f56f303d371b4579 Author: David Brooks Date: Wed Jun 18 11:06:55 2014 +1200 Set uri, units, and label of data variables. commit a83fdd1113293aba3e39b036b951e99147ee7c3d Author: David Brooks Date: Wed Jun 18 11:00:57 2014 +1200 Rename `DataStore` to `DataSet` as the class represents a collection of data variables that may be held in a store (`DataStore` will then represent the class of stores). commit e318e090dd380462b8ecf8073ddb29765852807d Author: David Brooks Date: Wed Jun 18 10:54:17 2014 +1200 Remove Unicode file mark. commit ce2614fda7ad1f3a122efb53bcc62f416b150cfa Author: Alan Garny Date: Tue Jun 17 19:19:39 2014 +0200 Slight update to the developer documentation, now that we support building with Ninja [ci skip]. commit 57e1e7d9d9e07a3476e1303981f110620a224cad Author: Alan Garny Date: Tue Jun 17 18:53:14 2014 +0200 Done with supporting building OpenCOR with Ninja (closes #364). I thought our combined use of ADD_CUSTOM_COMMAND() and ADD_CUSTOM_TARGET() to add a plugin binary would work on all three platforms, but it only works on OS X! So, going for EXECUTE_PROCESS() instead. In the end, it’s an acceptable solution since this kind of files doesn’t have dependencies. commit 16b7dacbfad22e7e93b54a6e8990d6f743f2c1b3 Author: Alan Garny Date: Tue Jun 17 18:35:36 2014 +0200 Done with supporting building OpenCOR with Ninja (closes #364). commit 3fc00f3b72173a87d97841cc623b2890bc08eddb Author: Alan Garny Date: Tue Jun 17 18:20:27 2014 +0200 Done with supporting building OpenCOR with Ninja (closes #364). commit 4f517ce12e643f7adc65184174715e191a671fd1 Author: Alan Garny Date: Tue Jun 17 18:00:23 2014 +0200 Some work towards supporting building OpenCOR with Ninja (#364) [ci skip]. Not only does this work with Ninja (on Linux and OS X since it was already working fine on Windows), but it’s also neater. commit d19bbaa31d3badd46b936f6b52bf6c0bcc2cdfe6 Author: Alan Garny Date: Tue Jun 17 17:20:27 2014 +0200 Some minor cleaning up [ci skip]. commit 0d445930d9c9a635712addf1e48ba77909aed043 Author: Alan Garny Date: Tue Jun 17 16:35:40 2014 +0200 Some work towards supporting building OpenCOR with Ninja (#364) [ci skip]. commit 10429fd4232debfca8a790cfb5b24c174c104dc3 Author: Alan Garny Date: Tue Jun 17 16:25:20 2014 +0200 Revert "Some minor cleaning up [ci skip]." This reverts commit b66ae7e0bbf2faf6c22d26e0607084467e048c8a. commit b66ae7e0bbf2faf6c22d26e0607084467e048c8a Author: Alan Garny Date: Tue Jun 17 16:19:12 2014 +0200 Some minor cleaning up [ci skip]. commit 2fb080803a5cb5d3fe5d56f7d2edf6355d7ef516 Author: Alan Garny Date: Tue Jun 17 16:03:22 2014 +0200 Some minor cleaning up [ci skip]. commit 97939902cf578c41451945bcf6e2b817c53f081a Author: Alan Garny Date: Tue Jun 17 15:58:36 2014 +0200 Some work towards supporting building OpenCOR with Ninja (#364). commit 917f67e242ffa431918f0190a32964e7998839a8 Author: Alan Garny Date: Tue Jun 17 15:52:36 2014 +0200 Some minor cleaning up [ci skip]. commit fdd71dcd3730fd3419d714eb933e0b55098ae018 Author: Alan Garny Date: Tue Jun 17 11:34:43 2014 +0200 Slight improvements to our Windows batch files [ci skip]. commit 1143a64e8884e553fc55538dd4bbad17bf67c62f Merge: 710e57059 56c17f8f0 Author: David Brooks Date: Tue Jun 17 13:00:25 2014 +1200 Merge branch '\''master'\'' into dataplugin commit 56c17f8f0fef1a3c090034c3697e5e2664bf5337 Author: Alan Garny Date: Mon Jun 16 18:18:54 2014 +0200 Done with making it an option to use CVodeSetStopTime() (closes #371). commit c128197ceaf4693eb23f4c491164e7fbe11875f5 Author: Alan Garny Date: Mon Jun 16 17:56:46 2014 +0200 Some work on making it an option to use CVodeSetStopTime() (#371). commit 1e0282b2cf8cea0da60d2db5160c39151cde4337 Author: Alan Garny Date: Mon Jun 16 17:54:24 2014 +0200 Some minor cleaning up [ci skip]. commit fbc17ebb2f719f9464cee4b940a290dcf5f06542 Author: Alan Garny Date: Mon Jun 16 17:39:22 2014 +0200 Some minor cleaning up [ci skip]. commit 70f53c3d169984e0ba84e6fbaff6b0452f6f621a Author: Alan Garny Date: Mon Jun 16 17:38:49 2014 +0200 Manually reverting some changes which should never have been committed in the first place [ci skip]... commit d753e72dee2efdeeabd6a4ac328e2dc5a44da923 Author: Alan Garny Date: Mon Jun 16 17:31:46 2014 +0200 Some minor cleaning up [ci skip]. commit d6c98476b77812be72e0d95289975e0b7fd6df23 Author: Alan Garny Date: Mon Jun 16 17:27:00 2014 +0200 Some minor cleaning up [ci skip]. commit 50ac3affd686c283d7a1081459388528b0eda554 Author: Alan Garny Date: Mon Jun 16 13:58:16 2014 +0200 Some minor cleaning up [ci skip]. commit 5ac8b5bce8450aaef0b76bf7478b47843b21e558 Author: Alan Garny Date: Mon Jun 16 13:46:42 2014 +0200 Some work towards using CMake 3.0.0 to build OpenCOR (#365). commit 81b77ee7cb635d586cdfd27226bfbb0b8139ae8d Author: Alan Garny Date: Mon Jun 16 13:45:57 2014 +0200 Some work towards using CMake 3.0.0 to build OpenCOR (#365). commit 710e570593729e59b763aba7f4ec088f187fde1a Author: David Brooks Date: Mon Jun 16 21:01:46 2014 +1200 Add `size()` for a DataVariable’s buffer and don’t return size when saving points. commit 91b592a91957bcbfa63041ee7892b09a838bab4c Author: David Brooks Date: Mon Jun 16 20:54:06 2014 +1200 Use renamed methods from DataStore. commit b9d3326639f8e744081e876cd14453050b14c2c0 Author: David Brooks Date: Mon Jun 16 20:52:59 2014 +1200 Rationalise names of methods; return `vector` when holding points, not a starting index into the store’s internal buffer. commit 88a8dc7b62b819bfe5dbe7cc677b5976c86adadf Author: Alan Garny Date: Sun Jun 15 17:16:37 2014 +0200 Done with supporting both Linux and OS X with Travis-CI (closes #369). commit ae6bbb4d9dd978fde0e1900c7157b3ddb8805d16 Author: Alan Garny Date: Sun Jun 15 16:47:26 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 4377eab07ca2d9c56b6a0840f5d1052f29faccdd Author: Alan Garny Date: Sun Jun 15 16:43:53 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 767fab820a1519c6a22f1bfee71e816afab1a05c Author: Alan Garny Date: Sun Jun 15 16:40:37 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 36480baef23c07416b28d4bc88d4ec330e8406bf Author: Alan Garny Date: Sun Jun 15 16:34:58 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 506881ee348a148b377833640389a49a1410f845 Author: Alan Garny Date: Sun Jun 15 16:30:35 2014 +0200 Done with using CVodeSetStopTime() in the CVODE solver (closes #370). commit ecc8d4dc20420501c39d8b9015bdddd3fc45a7a1 Author: Alan Garny Date: Fri Jun 13 17:58:56 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 9f6e706c7e73a8a402a3c25b22605c6fa070c5e3 Author: Alan Garny Date: Fri Jun 13 17:54:51 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 6d3f8eb5e56719570703ecb7927a558ced00ea47 Author: Alan Garny Date: Fri Jun 13 17:51:45 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 88f3b88d7ae019c461959e2f927a73938b5b086c Author: Alan Garny Date: Fri Jun 13 17:31:36 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 1dbac15e69e9f2ee94163155a452ca97a84fdf14 Author: Alan Garny Date: Fri Jun 13 17:08:41 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI (#369). commit 831197324fd003aa36487c9cc7f0858b2b1a0e78 Author: Alan Garny Date: Fri Jun 13 17:04:27 2014 +0200 Done with getting our Travis-CI script to work with OS X (closes #363). commit f5f09ca9a37eaf463893919cc1358e3a6e3a3812 Author: Alan Garny Date: Fri Jun 13 16:51:12 2014 +0200 Done with fixing an issue with CellMLSupport crashing OpenCOR on OS X when exiting (closes #368) [ci skip]. commit a82d318bfd484a6077bcab6e27832296832e3141 Author: Alan Garny Date: Fri Jun 13 16:25:48 2014 +0200 Some minor cleaning up [ci skip]. commit 481129ebde3f2d8a50fee3f2f385732649b094cb Author: Alan Garny Date: Fri Jun 13 15:56:50 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit f2ce716e2d562c15f64b9029d175ac8e3290199d Author: Alan Garny Date: Fri Jun 13 15:35:55 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 0c622cb2166528bae1053e147e95e1e751650155 Author: Alan Garny Date: Fri Jun 13 15:16:22 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit e43c7a98a094fd511c174bfcc11dfe71615247c8 Author: Alan Garny Date: Fri Jun 13 15:13:03 2014 +0200 Some minor cleaning up [ci skip]. commit b879efa7b6ef38786ea6a0cb6d5eb6b5908fa23d Author: Alan Garny Date: Fri Jun 13 15:09:40 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 288d11c0b0548667712340522c7bc717203f0ba5 Author: Alan Garny Date: Fri Jun 13 15:02:17 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 85f0c6879d74065b194e42381f5a99c4faf9bef9 Author: Alan Garny Date: Fri Jun 13 14:54:35 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 6d7c99fa0d030e44c10fa5d5ed62168a21eee7a1 Author: Alan Garny Date: Fri Jun 13 14:50:36 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 87ff3ce91a503f72790a01456bfbb8a5dbaf4e15 Author: Alan Garny Date: Fri Jun 13 14:47:35 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit dd17c5230ccaa15678975d17bfaea648ea636677 Author: Alan Garny Date: Fri Jun 13 14:46:58 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X (#363). commit 2641c243870cfe0bfd4561b78a8c9b4153f8ec97 Author: Alan Garny Date: Fri Jun 13 14:40:02 2014 +0200 Dione with using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (closes #367). commit aee2ef64bc69a55195901779ca442a668d6b3aca Author: Alan Garny Date: Fri Jun 13 14:37:16 2014 +0200 Dione with using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (closes #367). commit a05eff2c00db370674cc3c37f8aec1754cd5b602 Author: Alan Garny Date: Fri Jun 13 14:34:00 2014 +0200 Dione with using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (closes #367). commit a1c5b7d4101e447884fb9a4e0f4839ec91afa426 Author: Alan Garny Date: Fri Jun 13 14:25:01 2014 +0200 Dione with using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (closes #367). commit b3428219a57310dc00d4b5a3e0a55182dc8ff894 Author: Alan Garny Date: Fri Jun 13 14:22:52 2014 +0200 Dione with using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (closes #367). commit 85092bb48021423b7904fdf2ed86e094baa46606 Author: Alan Garny Date: Fri Jun 13 14:10:31 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 8f447d15323f1b5b3ac0df08408d334ca0add1ff Author: Alan Garny Date: Fri Jun 13 14:09:10 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit df64be86c97aaa2d543f1daac4b1a99910ab92bf Author: Alan Garny Date: Fri Jun 13 13:55:18 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 000714cdbc49df1554ed90fc030bba6c76b35b6a Author: Alan Garny Date: Fri Jun 13 13:47:02 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 8ce448ea5cebfd9fd77c98e7fd8b4a0c06f9c9da Author: Alan Garny Date: Fri Jun 13 13:42:04 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 63e5c58ce247d22ad055a16e6421f0f2898f8a4c Author: Alan Garny Date: Fri Jun 13 13:33:54 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 837658cabf477856842a2624c9acd0a25e833afa Author: Alan Garny Date: Fri Jun 13 13:29:18 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 0dd684e35042524bd4576cd3c3fa8844b571f7f4 Author: Alan Garny Date: Fri Jun 13 13:19:32 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 58781e97efef65995bf47048ac5292ccde18310b Author: Alan Garny Date: Fri Jun 13 13:10:14 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 602ab4cbc3a8499722978e84f7d92db27807d8e5 Author: Alan Garny Date: Fri Jun 13 13:05:58 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit ba49318b530231bd03306a47eb62cc7257f0ae3a Author: David Brooks Date: Fri Jun 13 21:58:59 2014 +1200 Use a DataStore to hold a simulation’s results. commit aafa722f55914750e7b21d07b709398bb73fbe9d Author: Alan Garny Date: Fri Jun 13 11:58:43 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit c2884089d7fb043b4dac80d2e4191dca328cf68e Author: Alan Garny Date: Fri Jun 13 11:55:06 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit a6f1359aae0daebad24e744dc3b815488c181308 Author: David Brooks Date: Fri Jun 13 21:54:24 2014 +1200 Improve readability by underlying method names. commit 27cc68d29d53ccef8fe9908691a10bc13ed2726e Author: David Brooks Date: Fri Jun 13 21:53:11 2014 +1200 Use our own types for sizes and counts. commit bb71912e4c0408e652851bc27542ddc3e209556d Author: David Brooks Date: Fri Jun 13 21:52:17 2014 +1200 Retrieve a variable from a store by its index. commit 757460823a96573fd430c84b9564b90c1eb6fe97 Author: David Brooks Date: Fri Jun 13 21:50:59 2014 +1200 Return the (start) index into a store’s variables when holding elements and getting a new store variable. commit bb6a8c261d81c972001a19bf983afd685a45d2bb Author: David Brooks Date: Fri Jun 13 21:47:54 2014 +1200 Get an variable’s data array and an individual element. commit 9cc616f2c08590e2065dc36f7983608ed993b792 Author: David Brooks Date: Fri Jun 13 21:46:36 2014 +1200 Return index of where a value is stored. commit 7c1fa57e7b209d5744e0747e04d0c2d7ad2362d2 Author: Alan Garny Date: Fri Jun 13 11:42:22 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 99ba8f6d3cbcdf09b824f273929bc87668b132de Author: Alan Garny Date: Fri Jun 13 11:36:33 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit ae4be11500593f5c7cf7ab1e40b1211935132e99 Author: Alan Garny Date: Fri Jun 13 11:33:56 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit a325d2a640104c48a3aeb943a92f09ed8c27e5d9 Author: Alan Garny Date: Fri Jun 13 11:30:38 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 0c4a20c25f24e93238592cf2fec97f94fe1ca637 Author: Alan Garny Date: Fri Jun 13 11:26:58 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 8ad3042f85f83760d6888184f9a5e49fa8dbb562 Author: Alan Garny Date: Fri Jun 13 11:24:12 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit f9a9ef4d6fbebbc97af3290315286aa05439fa14 Author: Alan Garny Date: Fri Jun 13 11:18:21 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit a631c7820b79f8a152d401fc9a0293a9a69474a2 Author: Alan Garny Date: Fri Jun 13 11:14:47 2014 +0200 Some work on using the CMake binaries (in Travis-CI) rather than recompiling them ourselves (#367). commit 742b9601c2e2cbe13f00b852d7e0a208450fb22d Author: Alan Garny Date: Fri Jun 13 10:55:21 2014 +0200 Oops, forgot to update the minimum required version of CMake (#365). commit 39068ae9908d469daca4828da210cb1f8deed37f Author: Alan Garny Date: Thu Jun 12 16:25:08 2014 +0200 Done using CMake 3.0.0 to build OpenCOR (closes #365). commit 961e32ff0a55e8bbfd6796432dd7b109d94a902b Author: Alan Garny Date: Thu Jun 12 15:49:05 2014 +0200 Quickly going back to our original Travis-CI script as we want to upgrade to CMake 3.0.0. commit f0f320d5e4f5dfd16b447ff287650227fe0d4ae1 Author: Alan Garny Date: Thu Jun 12 15:32:00 2014 +0200 Travis-CI: some work on trying to get our script to work with OS X (#363). commit 4beb2879b1eb94d405ab6711290b30cff0a7d2c1 Author: Alan Garny Date: Thu Jun 12 14:49:03 2014 +0200 Travis-CI: adding OS X as one of the OS targets (in addition to Linux). commit 620a18254842e788bdb883eeaeff648777f1d30d Author: Alan Garny Date: Thu Jun 12 14:41:00 2014 +0200 Some minor cleaning up. commit 8a222e024f86fddf83486c3b44af7b7febbab5e6 Author: Alan Garny Date: Thu Jun 12 11:51:49 2014 +0200 Travis-CI: use the OS'\''s default compiler. Indeed, to build a release version of OpenCOR using Clang on Linux fails. There is an issue with __extern_always_inline being unknown while it’s all fine when building a debug version. Anyway, no time to investigate, not to mention that we always use the default compiler on a given OS, so… commit 4732553edf2a0d86c831ad4460be1989b6bd54f0 Author: Alan Garny Date: Thu Jun 12 11:23:35 2014 +0200 Travis-CI: add Clang as a compiler (in addition to gcc). commit 26a5211c7364c6314fb4629a3433fe126b30d456 Author: David Brooks Date: Thu Jun 12 12:55:22 2014 +1200 Define a `Datastore` plugin category and a `CoreDatastore` plugin. commit fa6163f93e739b98df2f40a67f3b0e9fb220015f Author: Alan Garny Date: Wed Jun 11 18:50:15 2014 +0200 Done fixing an issue with closing the last file (through the Core CellML editing plugin) and reopening it reseting all the settings (closes #362). We clear all the user settings as late as possible. commit e5d9ad841acc4d63c5e1eff76cea4a70ce90c19c Author: Alan Garny Date: Wed Jun 11 18:48:49 2014 +0200 Some work on fixing an issue with closing the last file (through the Core CellML editing plugin) and reopening it reseting all the settings (#362). commit e7b13e57320208d9a76762d6cfdbe3909d01f886 Author: Alan Garny Date: Wed Jun 11 18:00:49 2014 +0200 Some minor cleaning up. commit 5ba17c7b9b46e278263b881d3d59c681ff1d5ff9 Author: Alan Garny Date: Wed Jun 11 16:17:30 2014 +0200 Some minor cleaning up [ci skip]. commit 7d9c90539dfed62194d89709cb623a01544b987e Author: Alan Garny Date: Wed Jun 11 15:25:37 2014 +0200 Some work on adding a list to the Core CellML editing plugin (#360). commit 5a42affab97cbd27de43bdf31b516c460c419190 Author: Alan Garny Date: Wed Jun 11 14:38:24 2014 +0200 Some work on adding a "CellML Validation" action to the Core CellML editing plugin (#361). commit 937b9d589c3c8fb60d9650fa8fbd9379543f273c Author: Alan Garny Date: Wed Jun 11 14:14:44 2014 +0200 Some minor cleaning up [ci skip]. commit 8c3c0d8493a3c92333239b7fc2a64156f50641cf Author: Alan Garny Date: Wed Jun 11 13:52:55 2014 +0200 Some minor cleaning up [ci skip]. commit b03453a62456daa0c3a566d35d60f871c9287944 Author: Alan Garny Date: Tue Jun 10 19:01:52 2014 +0200 Slight improvement to our editor list (#360) [ci skip]. commit 7096a5ae3351dac3527d5377a43392938600e69e Author: Alan Garny Date: Tue Jun 10 18:50:55 2014 +0200 Some improvements to some of our editing plugins. commit 83ccfc0a79373fcde3d1138b2e7178cc65754d70 Author: Alan Garny Date: Tue Jun 10 18:34:20 2014 +0200 Some minor cleaning up [ci skip]. commit e442e73b189643062f23bfc988a27bb9c92989e7 Author: Alan Garny Date: Tue Jun 10 18:29:42 2014 +0200 Some slight improvements to some of our editing plugins. commit a27d0e360c51497e31bd0ce71155ad08a9bb9dd3 Author: Alan Garny Date: Tue Jun 10 18:19:28 2014 +0200 Quite a lot of cleaning up and, as a result, improved code. commit fc0191114e961646b0513a610f269dd1221fb0d4 Author: Alan Garny Date: Tue Jun 10 17:28:29 2014 +0200 We are sometimes having problems building OpenCOR on Travis-CI, so if the build machine has n processors, then we now run n-n/2 jobs simultaneously. commit f7beddb409b6700507a86b37c00a706c5146d402 Author: Alan Garny Date: Tue Jun 10 16:50:13 2014 +0200 Some work on adding a list to the Core CellML editing plugin (#360). commit 2a750e2ea8a0e4287040dc67cf56bfbf2c93af68 Author: Alan Garny Date: Tue Jun 10 15:19:47 2014 +0200 Some work on adding a list to the Core CellML editing plugin (#360). commit e49532ee9e3a83f8807c043749f12ab5343ad1eb Author: Alan Garny Date: Tue Jun 10 15:18:53 2014 +0200 Some minor cleaning up [ci skip]. commit c26cb587c2b2cc810efb2ba4df13072e34725bfc Author: Alan Garny Date: Tue Jun 10 15:17:01 2014 +0200 Some minor cleaning up [ci skip]. commit c2d8bbf60bb9b4cdd5607178c260841b4a34adfb Author: Alan Garny Date: Tue Jun 10 14:06:42 2014 +0200 Some minor cleaning up. commit be4e027488171b4dffb2465a10e4206921231cfb Author: Alan Garny Date: Tue Jun 10 14:00:01 2014 +0200 Some work on adding a list to the Core CellML editing plugin (#360). commit 82c3880221d9a388bf144ecf644fd5ce31b44b75 Author: Alan Garny Date: Sun Jun 8 23:15:19 2014 +0200 Done with handling a CellML API crash when when trying to generate code for a malformed CellML file (closes #340). commit e70f950a74e5d48454bb0d2c1a490f0bf83bd4cd Author: Alan Garny Date: Sun Jun 8 22:21:59 2014 +0200 Done with handling a CellML API crash when when trying to generate code for a malformed CellML file (closes #340). Done with handling a CellML API crash when when trying to generate code for a malformed CellML file (closes #340). commit 246471c7a820a436d144ef5a66c129b71e128fb7 Author: Alan Garny Date: Fri Jun 6 16:06:40 2014 +0200 Reverted our work towards handling a CellML API crash when when trying to generate code for a malformed CellML file (#340) [ci skip]. commit 1747087606dc44d75512d4c96be66b7d1599137a Author: Alan Garny Date: Fri Jun 6 15:56:51 2014 +0200 Reverted our work towards handling a CellML API crash when when trying to generate code for a malformed CellML file (#340). Indeed, there was (clearly) a fundamental issue with the CellML API, so it really ought to be fixed there than have us handle a possible crash of the API. commit 1bd0890ff0a4422488a2d9b2ea89883a67ef5dfc Author: Alan Garny Date: Thu Jun 5 16:59:34 2014 +0200 Done with only copying the exact contents of the viewer (closes #358). commit 2c1eaf55713c8ca8d1111fda4bb7ae883a6437e8 Author: Alan Garny Date: Thu Jun 5 16:22:27 2014 +0200 Done with making the looking up of an equation more accurate in the Raw CellML editing view (closes #359). commit 427f960fb5863d0d2b5111bc634a6fdf551ec0d2 Author: Alan Garny Date: Thu Jun 5 14:11:39 2014 +0200 Done with fixing an issue with the viewer in the raw CellML editing view (closes #357). commit fe9fcca177413a0d544a381fa7a8b49e2b75c151 Author: Alan Garny Date: Thu Jun 5 13:19:42 2014 +0200 Done with fixing an issue with the viewer in the raw CellML editing view (closes #356). commit 5ccd1978fcd4a1767a45edac6568d436a85dbe59 Author: Alan Garny Date: Thu Jun 5 11:34:44 2014 +0200 Only allow the contents of the viewer to be copied to the clipboard when there is actually some contents. commit 16948b105726101691feed210bb4e38d571ffedc Author: Alan Garny Date: Thu Jun 5 10:57:01 2014 +0200 Added a tooltip to some actions. commit 2e6e2a55703a48d6666f92ea3a4f4b5e90d58405 Author: Alan Garny Date: Wed Jun 4 18:05:37 2014 +0200 Some minor cleaning up. commit 54bdedd2f9101f37ff83c050422b6ca47e047d3c Author: Alan Garny Date: Wed Jun 4 17:32:55 2014 +0200 Done with allowing the contents of the viewer to be copied to the clipboard (closes #355). commit 37178059cd5babcd31da4a9d6a41c6d87c731706 Author: Alan Garny Date: Wed Jun 4 11:52:10 2014 +0200 Some minor cleaning up [ci skip]. commit 4d3aad790119bf79e88f5c1923bf1bf371514657 Author: Alan Garny Date: Wed Jun 4 09:50:52 2014 +0200 Some minor cleaning up [ci skip]. commit a8e0f255916b3ff3a6b2030deff832f41403ef14 Author: Alan Garny Date: Tue Jun 3 17:40:23 2014 +0200 Minor update to the developer documentation [ci skip]. commit dc75155a066de0a4e89dcab14c9d0f5cd7e9eac3 Author: Alan Garny Date: Tue Jun 3 17:31:06 2014 +0200 Done using CMake options whenever possible as part of the build process (closes #354). commit 8db398417980cc36c1ce1cbd4d7b635a5ef4e4c5 Author: Alan Garny Date: Wed May 28 19:08:54 2014 +0200 Done with upgrading QScintilla from version 2.8.1 to version 2.8.2 (closes #353). commit 3272212d04330d5342929713566fd1e8c4194825 Author: Alan Garny Date: Wed May 28 18:48:25 2014 +0200 Some work towards upgrading QScintilla from version 2.8.1 to version 2.8.2 (#353) [ci skip]. commit fb3599e0b33f42a284ef16e1b600eb0b54db0f40 Author: Alan Garny Date: Wed May 28 18:40:39 2014 +0200 Argh, sigaction() is not supported on Windows (#340) [ci skip]! commit 5824b12416d1161272e0f9e1a7c2157c086c62d2 Author: Alan Garny Date: Wed May 28 18:33:25 2014 +0200 Some work towards handling a CellML API crash when when trying to generate code for a malformed CellML file (#340) [ci skip]. This seems to be working fine on Windows and OS X. On Linux, if we try to switch to the Simulation view for the first time (for the CellML file mentioned in the issue), then it’s OK, but then if we switch to another view and then come back, then OpenCOR crashes!? commit be151761c954f78dd606343fbb409ac644974b96 Author: Alan Garny Date: Wed May 28 18:28:39 2014 +0200 Some minor cleaning up [ci skip]. commit 5e86eccf2371a28e538c1b17a8c3364778300329 Author: Alan Garny Date: Wed May 28 18:08:16 2014 +0200 Some minor cleaning up [ci skip]. commit 085b815a8f9607c4b978fc5f1467df44f41f771c Author: Alan Garny Date: Wed May 28 16:46:28 2014 +0200 Some minor cleaning up [ci skip]. commit 2973579d3780b58bb58fd3be2cc0659453fe7dd2 Author: Alan Garny Date: Wed May 28 16:17:08 2014 +0200 Some minor cleaning up [ci skip]. commit b0f5d70ec19c1de3a9b175ac120a70d782097852 Merge: 7f39abc7e d9d3372f4 Author: Alan Garny Date: Tue May 27 17:15:20 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7f39abc7e8feb9e151e7d054bb380f48585db522 Author: Alan Garny Date: Tue May 27 17:14:39 2014 +0200 Some minor cleaning up [ci skip]. commit d9d3372f4b72c18112a91546e0b68ddca5c6554e Author: Alan Garny Date: Mon May 26 08:49:52 2014 +0200 Some minor cleaning up [ci skip]. commit 91d83e69dc9b750651b9f7617ac58c1b6cac9ef5 Author: Alan Garny Date: Sun May 25 17:54:16 2014 +0200 Done with writing some sample plugins (closes #337). commit 1fe4d86619bd679fb029752e21527f05779521b3 Author: Alan Garny Date: Sun May 25 11:49:38 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit d2c54f0d12256928bbade8e276965cceaa012b1f Author: Alan Garny Date: Fri May 23 20:24:57 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 0af75b26183b1f14967e4f13ead7880471b97a0b Author: Alan Garny Date: Fri May 23 19:48:01 2014 +0200 Some minor cleaning up [ci skip]. commit ea9620587b79c82a0bd9e912904398adade644be Author: Alan Garny Date: Fri May 23 18:42:44 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 87461bd62ef60c9cbc23bc1cd49c393b61b05722 Author: Alan Garny Date: Fri May 23 18:12:24 2014 +0200 Avoid some OS X console messages from being generated. commit 5265cd66677cc7af0965d4f333db9d1cee055188 Author: Alan Garny Date: Fri May 23 10:54:30 2014 +0200 Updated our Windows redistributable files [ci skip]. commit 02083aa71bebcc4bc996028fee0a991dd0471ac1 Author: Alan Garny Date: Fri May 23 10:36:04 2014 +0200 Some minor cleaning up. commit ab69ca73eaac9a385e961681dc4038d5a3297f71 Author: Alan Garny Date: Fri May 23 10:29:18 2014 +0200 Make sure that the Windows redistributable files are reachable when wanting to test OpenCOR locally. Indeed, depending on how a user'\''s computer is configured, these files may or not be reachable [ci skip]. commit 29859353a9c10a1658f1bd855a82b5e67967970b Author: Alan Garny Date: Thu May 22 18:45:27 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit c60027f85c9863baa6926d9f661e5073d8855977 Author: Alan Garny Date: Thu May 22 18:21:22 2014 +0200 Minor cleaning up to our view interface. commit 29f59b70ae054a0bb3ac5572165fad4ffa01a9c0 Author: Alan Garny Date: Thu May 22 17:15:07 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit cde49f05b192ed533d8664f0de1097581f0a21aa Author: Alan Garny Date: Thu May 22 17:02:29 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 1fa5684c89359d814531a3d727cfbad71b3ea072 Author: Alan Garny Date: Thu May 22 16:55:01 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 4eee8e9f9410d9cb78fe448d8617262cf2a619bd Author: Alan Garny Date: Thu May 22 15:46:26 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 47aac104114e1d4a43a63bd29440a4c1d7e50bf7 Author: Alan Garny Date: Thu May 22 15:45:59 2014 +0200 Minor cleaning up to our plugin interface. commit 39dcde53f89bb2e7b7ec9a86528d1d77f544d4ef Author: Alan Garny Date: Thu May 22 14:58:11 2014 +0200 Simplified our view interface. commit b1db582911073d5f88e2ef8c9ed83a96b9d6845e Author: Alan Garny Date: Thu May 22 14:14:02 2014 +0200 Some minor cleaning up [ci skip]. commit 9bd57964831cd8e2dd0884afecb08dd5c9010936 Author: Alan Garny Date: Thu May 22 11:38:28 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 8cdf298073c19a17ff0ec50d906c95fdc51f3096 Author: Alan Garny Date: Thu May 22 11:18:38 2014 +0200 Some minor cleaning up [ci skip]. commit 089e5d92c3681f56890b5ed25538db93d56601ca Author: Alan Garny Date: Thu May 22 10:54:07 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 94d0895474d9d1e82a0080a8cee513d84b7b7fc8 Author: Alan Garny Date: Wed May 21 18:59:04 2014 +0200 Some minor cleaning up. commit 4659bb33a350559924e29425f23071433b41a86c Author: Alan Garny Date: Wed May 21 17:48:18 2014 +0200 Some minor cleaning up [ci skip]. commit 7fef23d529903a2c3ad0f0c829f60a8117e51e98 Author: Alan Garny Date: Wed May 21 17:22:51 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 44bb42fa25fe157fdcdff4f64e40b420bf521e74 Author: Alan Garny Date: Wed May 21 16:57:30 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 0d4efb34f8efc83dd09d036fc5359bf33b3d48e0 Author: Alan Garny Date: Wed May 21 16:13:38 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit a0c1740f0f8d1fb58e336b4d0ec6f52640b79af0 Author: Alan Garny Date: Wed May 21 14:45:05 2014 +0200 Done with improving the build time of third-party libraries (closes #352). commit c54e98cf4adad9b05c5fa54739aacb3cfdbcb027 Author: Alan Garny Date: Wed May 21 14:10:49 2014 +0200 Some work towards improving the build time of third-party libraries (#352) [ci skip]. commit 6fd8499cd90e26f646ceb5b4f4de34c38801ea5f Author: Alan Garny Date: Wed May 21 13:47:34 2014 +0200 Some work towards improving the build time of third-party libraries (#352) [ci skip]. commit 2fa4b0f9cf712d62054eada95291ad810c2a92bd Author: Alan Garny Date: Wed May 21 13:44:22 2014 +0200 Some work towards improving the build time of third-party libraries (#352) [ci skip]. commit 1878264d9e3ccd2817e2d446b5dd592229295ae2 Author: Alan Garny Date: Wed May 21 13:33:32 2014 +0200 Some work towards improving the build time of third-party libraries (#352) [ci skip]. commit 4285126fa548c2f37c61753302213bb3f4011971 Author: Alan Garny Date: Wed May 21 11:19:37 2014 +0200 Some minor cleaning up [ci skip]. commit 045445830e10eab63f2bdacde7ef8cfb34688690 Author: Alan Garny Date: Wed May 21 11:09:04 2014 +0200 Some work towards improving the build time of third-party libraries (#352). commit 438154391aca1308ef6ced563b7cd855522e6aca Author: Alan Garny Date: Wed May 21 11:04:31 2014 +0200 Some work towards improving the build time of third-party libraries (#352). commit c9d94201bb82c0b33528618289e0531f660098bf Author: Alan Garny Date: Wed May 21 10:55:10 2014 +0200 Some work towards improving the build time of third-party libraries (#352). commit f9f546400b8ba45564093a96b5d2020d1b6903fb Author: Alan Garny Date: Tue May 20 19:35:52 2014 +0200 Ok, it'\''s CMake 2.8.7, so still not good enough for us, so still using '\''our'\'' version of CMake. commit 270e08582bf47e35d1aacc8dcf87f1f04f7a6f22 Author: Alan Garny Date: Tue May 20 19:32:48 2014 +0200 Checking which version of CMake is nowadays available on Travis-CI. commit a286a93024fe4b132cad8ae459e7af5dd331c947 Author: Alan Garny Date: Tue May 20 19:24:52 2014 +0200 Updated our Travis-CI script now that Qt 5.3.0 is out. commit b14b252a58d3e03cfbeaaafd189c74aeea0ab3a7 Author: Alan Garny Date: Tue May 20 19:20:20 2014 +0200 Updated our Travis-CI script now that Qt 5.3.0 is out. commit e87e4d5edf5c242c56052c446cc65b96f7b07ff3 Author: Alan Garny Date: Tue May 20 18:53:17 2014 +0200 Updated our LLVM binaries now that Qt 5.3.0 is out. commit 926c8d4d4b675d309d51c610e49d93bc094a0552 Author: Alan Garny Date: Tue May 20 18:08:24 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 78bcd9fd248df8cda513fd705daa4c503089851f Author: Alan Garny Date: Tue May 20 16:28:15 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 1b60591ee982f2cb11f46dd955578f350e4fda31 Author: Alan Garny Date: Tue May 20 15:55:17 2014 +0200 Fixed a small issue with our CellML file manager (closes #351). commit e8054371e2530f129c43e984203aeeb2e02f3ce0 Author: Alan Garny Date: Tue May 20 15:39:45 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 601a0981b1efdc1485bc1dbc2b60bdb587643adb Author: Alan Garny Date: Tue May 20 10:55:19 2014 +0200 Slight update to the developer documentation, now that Qt 5.3.0 and Qt Creator 3.1.1 have been released [ci skip]. commit 8f078148a409ddf9db35e246dfc8577e9e5d1d05 Author: Alan Garny Date: Tue May 20 10:29:46 2014 +0200 Slight update to the developer documentation, now that Qt 5.3.0 and Qt Creator 3.1.1 have been released [ci skip]. commit b26d0046240dd02c19f65cf493ba01a06a1a710f Author: Alan Garny Date: Tue May 20 09:59:19 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 935d665710a36db5ef89337e96aec2547dc927c9 Author: Alan Garny Date: Tue May 20 09:53:52 2014 +0200 Slight improvement to our file manager [ci skip]. commit 27e285d362f2638f9a650fd231b7d093e4bacde9 Author: Alan Garny Date: Mon May 19 18:33:03 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 5cc6a98fbbcbe9efbeef8ddd508354e1d231454f Author: Alan Garny Date: Mon May 19 18:21:10 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit ee82c071c6c2596d281f44f24d11e8d22f0054d7 Author: Alan Garny Date: Mon May 19 18:05:33 2014 +0200 Some minor cleaning up [ci skip]. commit 3cc5219489230a7ecbeb269c47d1f909a90fb668 Author: Alan Garny Date: Mon May 19 18:03:32 2014 +0200 Oops! commit d5beedf60f64ccf02acc3ba429eb31fdaf0868bb Author: Alan Garny Date: Mon May 19 17:30:49 2014 +0200 Some minor cleaning up [ci skip]. commit 97eb2411dd1a9c9ea5e30f4d74251ead77379a6d Author: Alan Garny Date: Mon May 19 17:28:49 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 5da05ecbed59a210e00cf8795974327f5b53b937 Author: Alan Garny Date: Mon May 19 17:28:11 2014 +0200 Add support for a sample mode (only when building in debug mode), so that we can put our Sample view in it. commit dd72dbcb8b450aadfaf057eedcdb3e65b4c6a40f Author: Alan Garny Date: Mon May 19 17:00:27 2014 +0200 Add support for a sample mode (only when building in debug mode), so that we can put our Sample view in it. commit 1f9cdd9c6966ea647f9411b971bed111ac193668 Author: Alan Garny Date: Mon May 19 16:49:35 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 9587e75716c90b2652ddebbc07192118562f8547 Author: Alan Garny Date: Mon May 19 16:46:10 2014 +0200 Some minor cleaning up [ci skip]. commit 69e50ed5947e4e7c9557282105c646412844c766 Author: Alan Garny Date: Mon May 19 16:04:04 2014 +0200 Some minor cleaning up [ci skip]. commit 78fbe83e046531db4012299d4a0f848bddfe4e4e Author: Alan Garny Date: Mon May 19 15:33:00 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 271a1592f5f795a88503573f4689b3c94bc9413e Author: Alan Garny Date: Mon May 19 14:56:39 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 9e4df685f28c66ba5d9529111525b860f60f3407 Author: Alan Garny Date: Mon May 19 14:56:16 2014 +0200 Some minor cleaning up [ci skip]. commit 0ecfd34668b6c63c7a7f581938cccc7423fb08d4 Author: Alan Garny Date: Mon May 19 14:30:52 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit f1d0f77623a76e3f173653b6473f77e8b91b2d75 Author: Alan Garny Date: Mon May 19 13:50:34 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 174f7b65014714892185f7700018a201ccce7b90 Author: Alan Garny Date: Mon May 19 13:48:56 2014 +0200 Some minor cleaning up [ci skip]. commit 9d8a95514366eb7c69d60138d2a808831e4c351b Author: Alan Garny Date: Mon May 19 13:25:02 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 0ac8289fc584f644cea10e59ddfaf0bd96c231f2 Author: Alan Garny Date: Mon May 19 13:04:05 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit f309e171f9053d104100c4fe7f734d434f5d9f05 Author: Alan Garny Date: Mon May 19 12:26:42 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit b9d61d4ca20381aba66638d771226263235a0b8e Author: Alan Garny Date: Mon May 19 12:22:40 2014 +0200 Some work towards writing some sample plugins (#337). commit 9b840264f4240914f834fffb7a9bffdbc4caae0e Author: Alan Garny Date: Mon May 19 12:16:02 2014 +0200 Argh, I shouldn'\''t have '\''simplified'\'' things. There was a reason for the way things were done the way they were: we programmatically had a list, which needs to be '\''below'\''... commit 4c7c90fa12178442c9fae2f51386b05c618ff501 Author: Alan Garny Date: Mon May 19 11:57:58 2014 +0200 Some minor cleaning up [ci skip]. commit a96b0307ae2305fe915e4514a69e3883c972ba23 Author: Alan Garny Date: Mon May 19 11:49:53 2014 +0200 Some minor cleaning up [ci skip]. commit 72d6794313b36f9cccf97eb99ede49f7c72cec18 Author: Alan Garny Date: Mon May 19 11:41:26 2014 +0200 Some minor cleaning up [ci skip]. commit 67e92ebb78033f32081fa613ffb6ae7bff547f50 Author: Alan Garny Date: Mon May 19 11:25:20 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 4a5ebfb5d0a221eaef0ed18d9d11a88479c12204 Author: Alan Garny Date: Sat May 17 16:30:41 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 0da3a3d0d2fa3efba6c5a17914e0fbd1063fb55e Author: Alan Garny Date: Fri May 16 23:37:32 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit db8593ded7b48d9c4dd838c72de1ddd0ebac04a0 Author: Alan Garny Date: Thu May 15 16:51:52 2014 +0200 Some minor cleaning up [ci skip]. commit 65daf2129382939f458ac890837911b312cac124 Author: Alan Garny Date: Thu May 15 15:30:02 2014 +0200 Some minor cleaning up [ci skip]. commit d161b8c721764157717a5089e36ccde5b1327d2e Author: Alan Garny Date: Thu May 15 11:24:37 2014 +0200 Some minor cleaning up [ci skip]. commit da0ad6dcfc9380bcd8f5c94402622bb6f7150f0b Author: Alan Garny Date: Thu May 15 10:31:14 2014 +0200 Minor file reorganisation [ci skip]. commit d4175201fdbb2c1c5988de6d5700e59d45309ccf Author: Alan Garny Date: Thu May 15 10:20:32 2014 +0200 Minor files reorganisation [ci skip]. commit 3dbdd2827194d85215a37eae013e842e421fb938 Author: Alan Garny Date: Wed May 14 12:00:52 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit ab58f79a0538d4cdd8b4fb26a09935c51f38fc82 Author: Alan Garny Date: Tue May 13 17:34:13 2014 +0200 Some work towards writing some sample plugins (#337). commit ec55132d03e3e74298839a7f5d3257c09bf10c03 Author: Alan Garny Date: Tue May 13 17:33:41 2014 +0200 Some minor cleaning up [ci skip]. commit 9064c79d47dbef289af1b0c3f7d5031ecdb9554a Author: Alan Garny Date: Tue May 13 17:16:45 2014 +0200 Some work towards writing some sample plugins (#337). commit f7989976c705657d1a5abad2a99d011da7de0700 Author: Alan Garny Date: Tue May 13 16:59:17 2014 +0200 Some work towards writing some sample plugins (#337). commit 0170e955b87a67eaab3554906e048fc59b8b708c Author: Alan Garny Date: Tue May 13 16:43:21 2014 +0200 Some minor cleaning up [ci skip]. commit f16422e871d2787aaa071600fc02b1bcdad42d9e Author: Alan Garny Date: Tue May 13 16:34:50 2014 +0200 Some minor cleaning up [ci skip]. commit aadbef8dc2cf1857e5b59ae9bc1e4e6decac63eb Author: Alan Garny Date: Tue May 13 16:01:50 2014 +0200 Fixed the issue with anchors not working with our fixed header (closes #350) [ci skip]. commit 7996c89e95edfb78927d23b271c97ce6ced9adce Author: Alan Garny Date: Tue May 13 15:54:14 2014 +0200 Fixed the issue with anchors not working with our fixed header (closes #350) [ci skip]. commit 38cb6c8c3167babf91883410b240e98b48a79eca Author: Alan Garny Date: Tue May 13 15:36:12 2014 +0200 Some minor cleaning up [ci skip]. commit aec0c4ec8190abf0f67f6426d4012341605884fe Author: Alan Garny Date: Tue May 13 14:18:19 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 9bf9bad6e386ed519fe2599f3ebb0afef0e5b9ed Author: Alan Garny Date: Tue May 13 11:48:30 2014 +0200 Done with upgrading to LLVM 3.4.1 (#349). commit 7167d3752ff3b1813cf9d97815b329ef7986a1f3 Author: Alan Garny Date: Mon May 12 19:08:53 2014 +0200 Some work towards upgrading to LLVM 3.4.1 (#349) [ci skip]. commit 12c9c1d16f4779b44f9e3d4455caa150d68563a3 Author: Alan Garny Date: Mon May 12 15:29:28 2014 +0200 Some minor cleaning up [ci skip]. commit 0f88258b83b95931432e5192a85e601e47f4d54b Author: Alan Garny Date: Mon May 12 15:27:39 2014 +0200 Some minor cleaning up [ci skip]. commit 804f0612c2ec93b502e803ba34985365516ac5e9 Author: Alan Garny Date: Mon May 12 14:48:01 2014 +0200 Some work towards upgrading to LLVM 3.4.1 (#349) [ci skip]. commit c471d8e7ec30f7703df00d8e27eca016758b29f4 Author: Alan Garny Date: Mon May 12 13:41:41 2014 +0200 Fixed the issue with newly built application not opening under OS X (closes #347). The previous ‘fix’ was always starting OpenCOR in GUI mode (!!). commit 256e8c46794e725ae31078a345d371bcbfd94fb3 Author: Alan Garny Date: Mon May 12 11:12:28 2014 +0200 Fixed the issue with newly built application not opening under OS X (closes #347). commit e83ca82c9423bdc3e35951afd00c598efee35f0a Author: Alan Garny Date: Mon May 12 11:11:32 2014 +0200 Some minor cleaning up [ci skip]. commit e1cf203908fe98dba23ba7277a3810129afbdb4e Author: Alan Garny Date: Sat May 10 19:50:31 2014 +0200 Fixed the issue with regards to pressing Ctrl+Q during the splash screen (closes #348). commit 1620f11a4892a862fd1f32a5dc8daaa42f699341 Author: Alan Garny Date: Sat May 10 18:49:12 2014 +0200 Make sure that we delete our splash screen after it has been closed (!). commit 7720430aef31fb88c753f6731be97e1a38f53782 Author: Alan Garny Date: Fri May 9 17:13:26 2014 +0200 Some minor cleaning up [ci skip]. commit b187da81930e7767d51053b63df0c67b012f491d Author: Alan Garny Date: Wed May 7 18:10:29 2014 +0200 Some minor updates to the developer documentation [ci skip]. commit d47f37ab0b7bc04291d5bca7b04177547fec91b8 Author: Alan Garny Date: Wed May 7 17:59:19 2014 +0200 Slight improvement to our plugin class. commit 5c724b48004c245f7077a9410a0164b9b6cb9b2d Author: Alan Garny Date: Wed May 7 17:19:51 2014 +0200 Some minor updates to the developer documentation [ci skip]. commit 6302f07928698d4fcbfc594f64ba69c881cd5ada Author: Alan Garny Date: Wed May 7 15:46:31 2014 +0200 Slight updates to the user documentation [ci skip]. commit 6f850d5fb9313a87366e144b3c52ba6d68f635a6 Author: Alan Garny Date: Wed May 7 15:46:15 2014 +0200 Some minor cleaning up [ci skip]. commit eb871fbf78b2cf845fe926df4545553aad772f51 Author: Alan Garny Date: Wed May 7 15:07:22 2014 +0200 Some work on displaying the status of all the plugins in the CLI version (#346). commit b8478f65a0762bc9f6a540f226547921daa51f6f Author: Alan Garny Date: Wed May 7 14:41:09 2014 +0200 Some work on displaying the status of all the plugins in the CLI version (closes #346). commit 6d869d89f12855610ba4330958eeff491befccad Author: Alan Garny Date: Wed May 7 14:31:15 2014 +0200 To avoid a warning on Linux (and therefore an error since we consider warnings as errors) [ci skip]. commit 7009e7f54a9b6fb615555c05b2460e9caea08f1f Author: Alan Garny Date: Wed May 7 14:21:27 2014 +0200 Some minor cleaning up. commit 675e0cb6b6e5cac5be747e71de622af9e1f8c60e Author: Alan Garny Date: Wed May 7 11:44:35 2014 +0200 Some minor cleaning up [ci skip]. commit 4746840c5ed39f99bb24b861b23412f6506b8bb1 Author: Alan Garny Date: Wed May 7 11:30:18 2014 +0200 Some work on displaying the status of all the plugins in the CLI version (#346) [ci skip]. commit fc7fe7e88c4e240ae3130fa7c6c51f796428faa0 Author: Alan Garny Date: Wed May 7 10:48:31 2014 +0200 Some work on displaying the status of all the plugins in the CLI version (#346) [ci skip]. commit 16035313c5823a4ffd5a6f8dc8cc313a1c63689d Author: Alan Garny Date: Wed May 7 09:32:25 2014 +0200 Generated new LLVM binaries for Windows. commit 1929668d438afa0c21172c7fe4466779d95193f9 Author: Alan Garny Date: Tue May 6 22:17:25 2014 +0200 Slight improvement to our plugins window [ci skip]. commit a63922a4016f161c97cf6348326278293f674613 Author: Alan Garny Date: Tue May 6 19:54:06 2014 +0200 Generated new LLVM binaries for Linux [ci skip]. commit 8ccbc06a6de786f6e11c35e62fe2683a34910497 Author: Alan Garny Date: Tue May 6 19:43:36 2014 +0200 Slight update to our LLVM README.txt file [ci skip]. commit ebb0a9e44b71e3d63d5409f923e87bafd5e22258 Author: Alan Garny Date: Tue May 6 19:23:19 2014 +0200 Generated new LLVM binaries for OS X [ci skip]. commit 25d55cb49e05f7f96a7950de94464eefc41af412 Merge: d75d024d9 c3d5eb90b Author: Alan Garny Date: Tue May 6 18:57:34 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit d75d024d987fb85479a96198605bb33c2f9ca181 Author: Alan Garny Date: Tue May 6 18:55:38 2014 +0200 Fixed a small issue with our plugins window (it would crash OpenCOR when opening the plugins window with only non-selectable plugins available). commit c3d5eb90b2e7ff7efa67ebbbb8f0384520cfb899 Author: Alan Garny Date: Tue May 6 18:19:06 2014 +0200 Generated new LLVM binaries for OS X [ci skip]. The data structure for a plugin information having slightly changed (added the CLI support flag), new LLVM binaries had to be generated. commit 2bdeed7aee931b0a156eb74431932dfa96370e9f Author: Alan Garny Date: Tue May 6 17:48:15 2014 +0200 Had forgotten to update the LLVM plugin information [ci skip]. commit ba628c80f3f59070f3818ee097ad6cc9c82adbfd Author: Alan Garny Date: Tue May 6 17:00:56 2014 +0200 Slight improvements to our plugin manager code. commit ae2848bc85daa51874e4e944011735a0d1f7c7da Author: Alan Garny Date: Tue May 6 16:56:19 2014 +0200 Slight improvements to our plugin manager code. commit 84323e2731348eff3dc9cb28ab1ad9c70bd1f70c Author: Alan Garny Date: Tue May 6 16:41:56 2014 +0200 Done with simplifying our plugin interfaces (closes #341). commit c5d20ce2b4b1989d46b84cc68baa50785b01cdb0 Author: Alan Garny Date: Tue May 6 16:02:34 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit b634ff90c641a906f1bdc9081d0015b6ccd9f8d0 Author: Alan Garny Date: Tue May 6 16:00:35 2014 +0200 Some minor cleaning up [ci skip]. commit 2b0340be81975bba62f66042eb0dde46a3710288 Author: Alan Garny Date: Tue May 6 15:23:46 2014 +0200 Some minor cleaning up [ci skip]. commit e66bc139f3e3bda3fe7a098838a5e30e5a7387ca Author: Alan Garny Date: Tue May 6 15:06:44 2014 +0200 Some minor cleaning up [ci skip]. commit 0abce79ac492f4d30d0ccc8457bcc70cd034d0e5 Author: Alan Garny Date: Tue May 6 11:39:37 2014 +0200 Some minor cleaning up (which, incidentally, re-allow the building of the CLI version of OpenCOR on Windows). commit 103685ec523889a1204b2006a0beab1128b29841 Author: Alan Garny Date: Tue May 6 11:29:29 2014 +0200 Slight improvements to our Batch files [ci skip]. commit 9a1a799fbeb17bbb9cd98580f2ef186faf7c8a98 Author: Alan Garny Date: Tue May 6 10:26:11 2014 +0200 Some minor updates to the user documentation [ci skip]. commit a9afa3ffef37d6bed3eb3c9227dc2946ac09ab8a Author: Alan Garny Date: Tue May 6 10:22:05 2014 +0200 Slight improvement to our CellML Model Repository window plugin [ci skip]. commit b673cb11dab409bae748d8d31cb4b5bf4411aba8 Author: Alan Garny Date: Tue May 6 09:27:42 2014 +0200 Done with fixing the issue showing/hiding docked windows (closes #344). commit 06801a9df46069f2d852a64e68cbff54e795aa16 Author: Alan Garny Date: Tue May 6 09:25:25 2014 +0200 Reverted the work done done so far on fixing the issue showing/hiding docked windows (#344) [ci skip]. commit 6e8aea002cdb66dbe872b6753ef791cd0d816347 Author: Alan Garny Date: Mon May 5 17:50:31 2014 +0200 Some minor cleaning up [ci skip]. commit a084b539fa6d85e4362a25ede079899070b81c70 Author: Alan Garny Date: Mon May 5 17:50:15 2014 +0200 Some minor improvements to our main window class [ci skip]. commit 99a00f4a77527f9af11b4e8ceb066732a1db377e Author: Alan Garny Date: Mon May 5 17:11:16 2014 +0200 Some minor improvements to our central widget class [ci skip]. commit c5974490ab9352a70e0a8a0997951d489662d2d4 Author: Alan Garny Date: Mon May 5 16:46:35 2014 +0200 Some minor cleaning up [ci skip]. commit 13db3f0943a9d84b5c9660cb2ee3d070ee0ffc24 Author: Alan Garny Date: Mon May 5 16:46:16 2014 +0200 Some work towards fixing the issue showing/hiding docked windows (#344) [ci skip]. commit 72522b6ae0055a06200e4bfd9fd1414213b93e2d Author: Alan Garny Date: Mon May 5 16:26:39 2014 +0200 Done with only loading CLI-capable plugins (and their dependencies) in CLI mode (closes #345). commit 5fc8f453b53003e8bd8d921a8a13af9f7f729c9d Author: Alan Garny Date: Mon May 5 15:37:41 2014 +0200 Reverted some of the '\''improvements'\'' to our plugin manager [ci skip]. commit 958da2fe86e6377f95bd9365c1342805d9d5e2d6 Author: Alan Garny Date: Mon May 5 15:24:16 2014 +0200 Some minor cleaning up [ci skip]. commit 975d351e68d24edb2daa86fe1adca7768482d673 Author: Alan Garny Date: Mon May 5 14:13:54 2014 +0200 Slight improvements to our plugin manager [ci skip]. commit 3b1fc64b3761428fb16403f6b3f00f072e94bfc1 Author: Alan Garny Date: Mon May 5 13:33:25 2014 +0200 Some minor cleaning up [ci skip]. commit 2d0b04be3ee24a1bd176d61e2f7455d7ca0a2fb1 Author: Alan Garny Date: Mon May 5 13:21:13 2014 +0200 Some minor cleaning up [ci skip]. commit 389e3d29828e61693ce1e180e6dbdcc30206cb64 Author: Alan Garny Date: Sun May 4 19:03:23 2014 +0200 Fixed a small memory leak [ci skip]. commit 071715aa166f4f01dac0a8d3f882b56fe70f0f69 Author: Alan Garny Date: Sun May 4 19:02:09 2014 +0200 Some minor cleaning up [ci skip]. commit 1f50fc32b85f4e5e5d4bc7cec2c4df7743f8d965 Author: Alan Garny Date: Sun May 4 11:04:23 2014 +0200 Slight updates to the user documentation [ci skip]. commit 9881899dc4b68d80c11996c42c49eaf8d3c30c40 Author: Alan Garny Date: Sun May 4 10:56:44 2014 +0200 Can now build both the CLI and GUI version of OpenCOR at the same time on Windows (closes #343). commit 0464fc9edfeea1f73283c2facc9e63d04f8fd92c Author: Alan Garny Date: Sun May 4 08:47:39 2014 +0200 Some minor cleaning up [ci skip]. commit da9522edbe0ae541e37e2a1d072cd37fcd01fec3 Author: Alan Garny Date: Sun May 4 00:28:04 2014 +0200 Updated jQuery from version 1.11.0 to version 1.11.1 [ci skip]. commit 67b874b422653530df1569fe5eae11802ec5f0ba Author: Alan Garny Date: Sat May 3 20:32:13 2014 +0200 Done fixing the Travis CI build. This was indeed related to our making the CLI version of OpenCOR a proper CLI application on Linux and OS X. In other words, to pass “-platform offscreen” is not needed anymore (but was for the GUI version). commit 7d404a3f7acef1359d0b28d158da361e91fcd3ba Author: Alan Garny Date: Sat May 3 20:11:40 2014 +0200 Getting close to fixing things for Travis CI. commit 13a2968329d47a1ab93713407285cec498a98b59 Author: Alan Garny Date: Sat May 3 20:05:19 2014 +0200 Getting close to fixing things for Travis CI. commit 3a2210ef782244948928455bd67a315a43f12c77 Author: Alan Garny Date: Sat May 3 19:58:58 2014 +0200 Getting close to fixing things for Travis CI. commit df20c03b7a912221a46db550c0c447665fd90784 Author: Alan Garny Date: Sat May 3 19:46:52 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. This might have been because of making the CLI version of OpenCOR a true CLI application on Linux and OS X. In other words, to pass “-platform offscreen” might have only been needed for the GUI version?… commit bc0dd9f6f76ac3d91ef0af7165487a23844af51f Author: Alan Garny Date: Sat May 3 19:37:11 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit 25225132df5432ca9ec7781b9c69aa7ed868f749 Author: Alan Garny Date: Sat May 3 19:28:16 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit aa9f4fca13cf21e09c08d67aa652b47179e6e30c Author: Alan Garny Date: Sat May 3 19:16:32 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit c29b434b804e056ef3ca049dada951ae15183bd2 Author: Alan Garny Date: Sat May 3 19:09:30 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit 50c21b9a9959c9909c2e6ff4e9a5856a5b4eabde Author: Alan Garny Date: Sat May 3 18:52:18 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit de0adba4b88c7f5507dfaa83130cde54c10b2996 Author: Alan Garny Date: Sat May 3 18:39:37 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit 5f5e2f01120013476d1ed739ef9572517d1d3e8f Author: Alan Garny Date: Sat May 3 18:27:48 2014 +0200 Not sure what is going on with Travis CI, so adding a few '\''tests'\''. commit 78d6c692c1bcb2dc4e471fe7760fc9579766b3c2 Author: Alan Garny Date: Sat May 3 16:26:22 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 6c0b975f521c2200745ea0871d2c037ece42d612 Author: Alan Garny Date: Sat May 3 15:14:44 2014 +0200 Ok, the last commit was a bad move (see 15fde25). commit 15fde25f9a8c381b6e3f6dc0b418b063467ffaa5 Author: Alan Garny Date: Sat May 3 15:07:45 2014 +0200 Slight update to our Travis CI script, now that we have a '\''proper'\'' CLI version of OpenCOR on Linux and OS X. commit e984207d361c8bd79f8f71f52ed9cf1b160bb872 Author: Alan Garny Date: Sat May 3 14:44:05 2014 +0200 Done with improving the command line version of OpenCOR on Linux and OS X (closes #342). commit 08b84f139d8374f2f95b4c53128a6d853008d569 Author: Alan Garny Date: Sat May 3 14:38:16 2014 +0200 Some minor cleaning up [ci skip]. commit 6e11490d2130b9b7c82e46878b7c9df4ca776a50 Author: Alan Garny Date: Sat May 3 13:31:24 2014 +0200 Some minor cleaning up [ci skip]. commit 1e38028cd059b9ce247d2df1d0d599a901d3000b Author: Alan Garny Date: Sat May 3 13:23:45 2014 +0200 Some minor cleaning up. commit 12418f7885742ff289605aa97ffaf112b14af969 Author: Alan Garny Date: Fri May 2 19:38:16 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 076db685fdf8f51f339b85eee5eec66be0fc9e74 Author: Alan Garny Date: Fri May 2 19:04:45 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 19edb77d145c29a67a61bd0c196ca70974acf959 Author: Alan Garny Date: Fri May 2 17:35:31 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 1d84515829b7545ecad1f9fda0146cd0ce9ace44 Author: Alan Garny Date: Fri May 2 17:25:12 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 63a65611067bdb260827c6d988d1c7d231941d6f Author: Alan Garny Date: Fri May 2 17:16:49 2014 +0200 Some minor cleaning up [ci skip]. commit 3b3722166d303ee4949fbf0c6836621d915579bd Author: Alan Garny Date: Fri May 2 15:51:39 2014 +0200 Revert "Some work on simplifying our plugin interfaces (#341)." This reverts commit a4ef1cef9933b08d5c613cf671f507a8ba929c52. commit a4ef1cef9933b08d5c613cf671f507a8ba929c52 Author: Alan Garny Date: Fri May 2 15:10:12 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 058f15ce10a35fafb257bdbee8a7c176342004c5 Author: Alan Garny Date: Thu May 1 18:17:20 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 422a62d35704bc487a6c4d75e05e1ac835552aee Author: Alan Garny Date: Thu May 1 18:02:12 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 28a08ab81f615a8b199111d20b65203cf3d7600e Author: Alan Garny Date: Thu May 1 17:35:57 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit ce9272e98ca538f3b6a6e82571fbb3f058932b39 Author: Alan Garny Date: Thu May 1 16:34:27 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 3e131f8dbbcc74707dd4efd1abf11099ebc627b4 Author: Alan Garny Date: Thu May 1 16:21:36 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 7e3efcf1b25e10d085fd29bc78b9d1b9b88478fe Author: Alan Garny Date: Thu May 1 15:47:11 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 5c769a69fb8a72bf2f36ba03c1ca342c3f3e7814 Author: Alan Garny Date: Thu May 1 15:42:24 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 3a7a0545bbc46dc3516556b04e15eebfb6e6162a Author: Alan Garny Date: Wed Apr 30 18:48:26 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 8f7f2633326e78f767ad8a4eb1b8d52ee6cc31ce Author: Alan Garny Date: Wed Apr 30 16:21:39 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 9a35790b2860f450d40ff377587a4829294a8040 Author: Alan Garny Date: Wed Apr 30 15:56:21 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 4d23dec405fa7a9f1d1e4af77e0c370b50c59cf0 Author: Alan Garny Date: Wed Apr 30 10:50:08 2014 +0200 Removed the test that exports a remote CellML 1.1 file to CellML 1.0. Indeed, to have such a test requires the CellML model repository to work flawlessly and well… sometimes it can be done or something may be wrong with it, so… commit d6a96e149bbebcbf6a2e276a1da6012386a9d40b Author: Alan Garny Date: Wed Apr 30 10:26:17 2014 +0200 Some minor cleaning up [ci skip]. commit 50f6f8151f37c78a12d803671c89bc4a12801479 Author: Alan Garny Date: Wed Apr 30 10:14:52 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 1f00109b30452fdc699e03e9c51f2b539bbde4ea Author: Alan Garny Date: Wed Apr 30 10:08:20 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit ea01cef02aa5aea4d1d970b6e67ef523ae582454 Author: Alan Garny Date: Tue Apr 29 18:45:28 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit a8ec3c3358ca1b42529a071165033aae084fc1dc Author: Alan Garny Date: Tue Apr 29 18:07:02 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit fb452385a20d1db82feb213773365ef7e205c28f Author: Alan Garny Date: Tue Apr 29 18:00:03 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 64edd69fd6fce573ed1d25649699ad3123c9b5d9 Author: Alan Garny Date: Tue Apr 29 15:19:48 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit e08a807699885f946b999ec8622ed28297b32ade Author: Alan Garny Date: Tue Apr 29 11:44:32 2014 +0200 Some work on simplifying our plugin interfaces (#341). commit 4c74c384975c0714e78d6c44c090fed6c5d1f7cc Author: Alan Garny Date: Tue Apr 29 10:19:37 2014 +0200 Some work towards writing some sample plugins (#337). commit 3801b0460323ec4d4a73a52c98f40f8abea56733 Author: Alan Garny Date: Tue Apr 29 10:16:39 2014 +0200 Some minor cleaning up [ci skip]. commit 7637fb68c872b671ebc6d23afb537ffebdcc3f0c Author: Alan Garny Date: Mon Apr 28 18:35:24 2014 +0200 Slight update to our CellMLTools tests since we now have SampleTools (and therefore another CLI-capable plugin). commit 095848434d6d4596d645d2ddf70fae0361775097 Author: Alan Garny Date: Mon Apr 28 18:28:43 2014 +0200 Some work towards writing some sample plugins (#337). commit d838af5e98cc1ab47bf9fc24b06829289df03e73 Author: Alan Garny Date: Mon Apr 28 18:28:30 2014 +0200 Some minor cleaning up [ci skip]. commit 751af46f9e66ea8c4d4acfe5188c73161ca5f38c Author: Alan Garny Date: Mon Apr 28 17:52:43 2014 +0200 Some work towards writing some sample plugins (#337). commit e3d000fae901eb4a82e5e58a7eb6a0cd005e68f1 Author: Alan Garny Date: Mon Apr 28 17:01:12 2014 +0200 Argh, it sometimes resized our plugins window when it shouldn'\''t have [ci skip]. Say that you decide to show/hide non-selectable plugins, then the plugins window would get resized when it clearly shouldn’t be. In the end, it’s probably best to leave things as they were before. If some text doesn’t fit, then the user can always resize the plugins window him/herself. commit f41d8f53168b1d31aa320615e7e6a4e762c8016a Author: Alan Garny Date: Mon Apr 28 16:13:41 2014 +0200 Some minor improvements to our building scripts. commit 0ea5ce1f9eca5af51a478d4d05b004edfe05402c Author: Alan Garny Date: Mon Apr 28 15:52:46 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit d315a12c66b34a8ae5789fc8d462b5b4e47d4b45 Author: Alan Garny Date: Mon Apr 28 15:48:50 2014 +0200 Improved, whenever necessary, the resizing of our plugins window. commit 65597f27afc835708f31e434f6921d41fe3c9d0d Author: Alan Garny Date: Mon Apr 28 14:45:54 2014 +0200 Some minor cleaning up [ci skip]. commit 87d5ebf6a205e1b20d38b27253c9a87ec01097ab Author: Alan Garny Date: Mon Apr 28 12:59:49 2014 +0200 Some minor cleaning up [ci skip]. commit d31c8a3414b710accc901063bc0fef6ca0b7f95b Author: Alan Garny Date: Mon Apr 28 10:37:10 2014 +0200 Slight update to our user documentation [ci skip]. commit 0ba7e2b2c41cf616075f43fe947b4fb8d54bc07f Author: Alan Garny Date: Sun Apr 27 15:36:52 2014 +0200 Some minor cleaning up. commit 045000adf0cfb2680e340bcafa4160da06901d9b Author: Alan Garny Date: Sat Apr 26 15:12:09 2014 +0200 Some minor cleaning up [ci skip]. commit 185ac33f9eae2f0ca755e70a3374fa1b1594a267 Author: Alan Garny Date: Sat Apr 26 14:47:13 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 345df50154a5c08b1e0ea58496ebb6f98a092750 Merge: d86f3291b e2c05fe97 Author: Alan Garny Date: Sat Apr 26 14:31:36 2014 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor Conflicts: doc/developer/develop/plugins/Sample.html commit d86f3291b966a9dd86defdce58b106e7ed4c1360 Author: Alan Garny Date: Sat Apr 26 14:14:53 2014 +0200 Some minor cleaning up. commit 9961eb37bc582129eea282d3af7680a89aac03d1 Author: Alan Garny Date: Fri Apr 25 17:22:55 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit e2c05fe97872828f42f715ffb8a8dcb9047b0426 Author: Alan Garny Date: Fri Apr 25 17:22:55 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit c57894360993aa79fb89a2b60850c128b8481c71 Author: Alan Garny Date: Fri Apr 25 17:04:30 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 626b2ae1302e9bf8cbb24044412470fad6318865 Author: Alan Garny Date: Fri Apr 25 16:07:48 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit c5c922bb9c345601f4b67b200b50dd8ed8a79287 Author: Alan Garny Date: Fri Apr 25 11:52:55 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit fed7342b6be874d2edb34f5a8fa995730f6c6a1f Author: Alan Garny Date: Thu Apr 24 19:31:31 2014 +0200 Some minor cleaning up [ci skip]. commit 7d7a680c9ad5a6c0704bf0d36be402bab775909b Author: Alan Garny Date: Thu Apr 24 18:30:55 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 1517519c31074c5f1dd3c7874ae25aa91a634cf5 Author: Alan Garny Date: Thu Apr 24 18:30:19 2014 +0200 Minor update to the developer documentation [ci skip]. commit 777ef64fe54adad1e4d3590d0cc0e1cf728d45dc Author: Alan Garny Date: Thu Apr 24 10:24:34 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit adc5073acac80a84dd3e861799017f7c2bd15d35 Author: Alan Garny Date: Thu Apr 24 10:24:21 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 3c6b3d8aea10fce2c4495554151dd4eda98e5e29 Author: Alan Garny Date: Wed Apr 23 19:57:10 2014 +0200 Oops, not quite all done properly (#339). commit 80ff091f916aa7fad02aab39fd0876e808af6147 Author: Alan Garny Date: Wed Apr 23 17:26:48 2014 +0200 Done renaming some plugins (closes #339). commit 04bde739c0d198ebb8d03be0af5694f913298e8d Author: Alan Garny Date: Wed Apr 23 17:12:03 2014 +0200 Some work towards renaming some plugins (#339). commit cdd8f9f35a7fa05800c0550a7271f9d3b6119c91 Author: Alan Garny Date: Wed Apr 23 15:58:48 2014 +0200 Renamed the [OpenCOR]/src/plugins/misc to [OpenCOR]/src/plugins/miscellaneous. commit 388de4e74702f2693bfd66ad9391b79d34872572 Author: Alan Garny Date: Wed Apr 23 15:46:32 2014 +0200 Some work towards renaming some plugins (#339). commit 385b50e8bff79875bd7ad0bfe3331b868d93866d Author: Alan Garny Date: Wed Apr 23 15:23:11 2014 +0200 Some work towards renaming some plugins (#339) [ci skip]. commit ddeb39c18fda20ee9def16c812fadaaa890d499e Author: Alan Garny Date: Wed Apr 23 15:19:07 2014 +0200 Some minor cleaning up [ci skip]. commit 7241dfc97b421393f9226ee49c1d26db22492389 Author: Alan Garny Date: Wed Apr 23 15:15:12 2014 +0200 Slight improvement to our plugins window [ci skip]. commit 3f00e2f0dfdb4bc530159263f7c612c1425f2bb1 Author: Alan Garny Date: Wed Apr 23 15:14:38 2014 +0200 Some work towards renaming some plugins (#339). commit f05443152aa4e03988716f98bc197eed76c26013 Author: Alan Garny Date: Wed Apr 23 14:07:42 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit c3aeb1d37d1b29e33a1c12f2599b43e90518e756 Author: Alan Garny Date: Wed Apr 23 09:21:21 2014 +0200 Some work towards writing some sample plugins (#337). commit 796b046ee5229c1d989173d7704d5f9f2db73fe2 Author: Alan Garny Date: Tue Apr 22 17:51:05 2014 +0200 Some minor cleaning up [ci skip]. commit bb2e0f914427f0e794167975ffbad5fb71517562 Author: Alan Garny Date: Tue Apr 22 17:45:04 2014 +0200 Removed the need to provide a type for a window plugin. commit 7bad0f7e8b2631fc53b8dd464528f3900bcae2f5 Author: Alan Garny Date: Tue Apr 22 14:37:51 2014 +0200 Some work towards writing some sample plugins (#337) [ci skip]. commit 90eb4caca821d841713bf5ba26b21e83848ccc19 Author: Alan Garny Date: Tue Apr 22 14:14:36 2014 +0200 Some minor cleaning up [ci skip]. commit 675ad6dc73c39beca9535e475710a2d9c6836eb8 Author: Alan Garny Date: Tue Apr 22 14:13:44 2014 +0200 Always use indirect rendering on Linux (closes #338). commit f5422fd7dfab1b643fbb51e8a900efda593f6e11 Author: Alan Garny Date: Tue Apr 22 13:13:49 2014 +0200 Slight improvement to our run script [ci skip]. commit 9ef71902ad9c2635de94c007fd59d364b4fafbf1 Author: Alan Garny Date: Mon Apr 21 11:16:25 2014 +0200 Slight updates to the developer documentation [ci skip]. commit 0616253f22f938edbc8bbdca53e062acf4636f9e Author: Alan Garny Date: Sat Apr 19 10:42:12 2014 +0200 Fixed a small typo on our downloads page [ci skip]. commit 8d2362b7bdd38e9a8f37ced0cb4ba70e63184cd4 Author: Alan Garny Date: Wed Apr 16 17:57:27 2014 +1200 Some minor cleaning up [ci skip]. commit e1fd84fc72df0f12f2849b138cbc7a7def3687b4 Author: Alan Garny Date: Wed Apr 16 15:00:24 2014 +1200 Some minor cleaning up [ci skip]. commit 2a8a5422e59c66435feb8008093c4426f9c3206e Author: Alan Garny Date: Tue Apr 15 16:13:29 2014 +1200 Minor updates to the user documentation [ci skip]. commit 5d71937ce0042228ad1139001b9e3f4079e72e5e Author: Alan Garny Date: Sun Apr 13 19:06:56 2014 +1200 New snapshots. commit 10f2864cb434f6c6b4b70d24d82b555efc89cd66 Author: Alan Garny Date: Sun Apr 13 18:34:43 2014 +1200 Fixed a small issue with removing global instances on a vanilla Linux machine. This was working all fine on our development machine, but definitely not a vanilla one. Whatever the case, the fix simply consists of delaying the removal of global instances after we have created our application. It is actually better this way! commit 8441cd420ec2214f3294122a9127ba8e7cb7e30d Author: Alan Garny Date: Sun Apr 13 18:03:00 2014 +1200 Some minor cleaning up [ci skip]. commit e31e6d06ccad5a6233e84c9a96a0d6c8c1c5d612 Author: Alan Garny Date: Sun Apr 13 17:07:52 2014 +1200 The qjpeg plugin from Qt is necessary if we want to be able to render JPEG images (as is required for our Help plugin). Incidentally, everything is actually OK without this plugin on Windows and Linux. It’s just on OS X that it is really needed. Still, it can’t harm having it on Windows and Linux too. commit 2d382cdfd888f096ddb684572af625dd296def23 Author: Alan Garny Date: Sun Apr 13 13:22:39 2014 +1200 Updated the user documentation related to the RawView plugin (closes #77) [ci skip]. commit d3f71237d5051a09d522d9448061daaf205ee2a0 Author: Alan Garny Date: Sun Apr 13 11:55:01 2014 +1200 Some minor cleaning up. commit 42ece6c178ceadeab2c44530fd5f4476bd5873e1 Author: Alan Garny Date: Sat Apr 12 21:27:44 2014 +1200 Some minor updates to our user documentation [ci skip]. commit 81dcb3e4388c47c5c0d5eacd666a6c334bce3f21 Author: Alan Garny Date: Sat Apr 12 21:23:39 2014 +1200 Only use Google Analytics for the website itself (i.e. not locally or within OpenCOR) [ci skip]. commit cee23626d4990fff8ba85421f02ec184d6c45848 Author: Alan Garny Date: Sat Apr 12 18:59:00 2014 +1200 Updated the screenshots for our Help plugin documentation [ci skip]. commit f8734da0a3d4e98ee184cd3c1e392f0c18d5af22 Author: Alan Garny Date: Sat Apr 12 18:24:47 2014 +1200 Reorganised the user documentation for our plugins [ci skip]. commit f06fbfb3545f3a24ece9f452a806c8382e2c78b4 Author: Alan Garny Date: Sat Apr 12 16:31:03 2014 +1200 Improved our file manager by handling the case of file not being readable anymore. commit 14251e2853b5f1b44dd80a40387e2bdd3e429778 Author: Alan Garny Date: Sat Apr 12 16:30:40 2014 +1200 Some minor cleaning up [ci skip]. commit 39e1ff09acbb77e97981ac5d1071abe93ece19a6 Author: Alan Garny Date: Sat Apr 12 15:03:08 2014 +1200 Some minor improvements to the way our file manager checks files. commit fec6753c5c69ae7ab6555ae32a93eab96293fa32 Author: Alan Garny Date: Sat Apr 12 14:48:32 2014 +1200 Minor fix to our file manager [ci skip]. commit e77f2b3e178a84132eaaf5af2f5d60248f1dbb34 Author: Alan Garny Date: Sat Apr 12 14:19:09 2014 +1200 Some minor cleaning up. commit 0ae4d6e898e4d13c5667db88a158533a2098ec6d Author: Alan Garny Date: Sat Apr 12 13:43:56 2014 +1200 Some minor cleaning up [ci skip]. commit 1f04490325653a2b45461429bdbc1599a30c2af8 Author: Alan Garny Date: Sat Apr 12 03:24:18 2014 +1200 Slight update to our user documentation (#329) [ci skip]. commit 6f7a4bffb62a1ac227e8addf8a277a50bd3dde86 Author: Alan Garny Date: Sat Apr 12 03:06:12 2014 +1200 Fixed the issue with folders and files not getting remembered from one session to another anymore in our File Organiser window (closes #329). This was caused by commit f4682b158504b2c61eca1acfc68a09f2d2505465, which was the result of some Xcode analysis (!?). commit 3e15956a27442711224b06686da7b0414bfe4288 Author: Alan Garny Date: Sat Apr 12 02:37:37 2014 +1200 Fixed the issue with not being able to open a recent local file on Windows (closes #331). I had forgotten something while working on issue #328. commit 932b6b057c5eabae7723214f512ba00f6ad2901a Author: Alan Garny Date: Fri Apr 11 16:29:54 2014 +0200 Can now close a file using Ctrl+W on Windows (as well as with Ctrl+F4; closes #330). commit be653418623f1042a846e3a249c51395e1d1b4d2 Author: Alan Garny Date: Sat Apr 12 02:08:38 2014 +1200 Fixed the issue with local and remote files not being properly distinguished on Windows (closes #328). commit 2a90acbc40ba8e3a6d786a36777f0bbb83296a37 Author: Alan Garny Date: Sat Apr 12 01:45:14 2014 +1200 Slight improvement to our find/replace widget in EditorWidget (#261). commit 2ec207b74b4158bc04221f628e399ebd62f02ddc Author: Alan Garny Date: Sat Apr 12 00:41:33 2014 +1200 Some minor cleaning up. commit 722dee5079a44d743ee17e0469673a929dba573e Author: Alan Garny Date: Fri Apr 11 19:30:24 2014 +1200 For some reasons, the export of a remote file to a user-defined format doesn'\''t work as expected on my local 32-bit Ubuntu 12.04 LTS, but is fine my 64-bit Ubuntu 12.04 LTS and on Travis CI!? commit 05f3b45742a74733e57b6ebeef2e679dc523e9cf Author: Alan Garny Date: Fri Apr 11 19:05:35 2014 +1200 Some minor cleaning up. commit dfa7e90f3bf927a6a1ae90bb78578ecdc5df4458 Author: Alan Garny Date: Fri Apr 11 19:03:07 2014 +1200 Slight update to our developer documentation [ci skip]. commit 00649db80f5c6e6cc011d6f3dc5ba4941e1c31eb Author: Alan Garny Date: Fri Apr 11 18:52:41 2014 +1200 Added some more tests to our CellMLTools plugin. commit bf0d73b2536b4c7f21bf35648764fa3238f4e9d9 Author: Alan Garny Date: Fri Apr 11 16:52:36 2014 +1200 Some minor cleaning up [ci skip]. commit 7988585ba7cb5c69c8e9c7a12afc09aeccd8bad9 Author: Alan Garny Date: Fri Apr 11 16:12:07 2014 +1200 Fixed the export to CSV issue with derived parameters (closes #327). commit af78f1873a71a03d1a5a44aa1962bf8dd91277b9 Author: Alan Garny Date: Fri Apr 11 13:52:17 2014 +1200 Disable the Pretty CellML view for now. commit 4dcc7682e18cedb0534d8c5e79b03b14bb57a5df Author: Alan Garny Date: Fri Apr 11 12:25:14 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 910c59c5f169e671f620ce975059a9598cb876b1 Author: Alan Garny Date: Fri Apr 11 11:28:25 2014 +1200 Some minor cleaning up. commit cbf00a7cd7e8468b9896bd74e1e3c22769917208 Author: Alan Garny Date: Fri Apr 11 11:21:33 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit f0b2dc9b96fd99467dc436bafa3ddfb74c8144c9 Author: Alan Garny Date: Fri Apr 11 10:53:16 2014 +1200 Improved the updating the viewer in the raw CellML view. commit ff7baf4fe07d0e7a60551d53f736566c16077654 Author: Alan Garny Date: Fri Apr 11 10:33:11 2014 +1200 Some minor cleaning up [ci skip]. commit 93e2df2a7a92599b1f28d7d4f84f355744df40d6 Author: Alan Garny Date: Fri Apr 11 09:48:26 2014 +1200 Some minor cleaning up. commit 0268511fa97ca3d41973f67b1795e33bd0d066d6 Author: Alan Garny Date: Fri Apr 11 09:20:58 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 2019d77e108954e2754aa212ec0564d6c8cfef94 Author: Alan Garny Date: Fri Apr 11 09:05:47 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 2becb7263b89afac606ee2ffdb78c0e3d7f9701b Author: Alan Garny Date: Thu Apr 10 19:01:14 2014 +1200 Got rid of our canUndo/canRedo strategy (#261). It was causing more problems than anything and we can, in fact, do perfectly without, so… commit 2774947c1e82c3698b47db274ca4462f0d09dfb9 Author: Alan Garny Date: Thu Apr 10 18:19:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 0469283683d3936921046d67a7f2121d1e994d2e Author: Alan Garny Date: Thu Apr 10 17:16:17 2014 +1200 Done with replacing "^" and "v" with "and" and "or", respectively (closes #326) [ci skip]. commit 667a66478ccf7ea7b63475dc92e5fc44ae73f0d1 Author: Alan Garny Date: Thu Apr 10 17:12:11 2014 +1200 Oops, I forgot to remove a line in my last commit! commit 8a6137cd217c75550f4eddfcc2023f77bc2ee75d Author: Alan Garny Date: Thu Apr 10 17:06:18 2014 +1200 Reverted some recent changes (#261). The textChanged() signal is good enough in those cases. In fact, to use the SCN_MODIFIED() signal in EditorWidget was causing issues with the rendering of equations (too many signals were emitted in some cases). commit 896ea2ea8983f50031bb69b6ee7339e58aaa39bd Author: Alan Garny Date: Thu Apr 10 16:36:56 2014 +1200 Some minor cleaning up. commit 1577fb8c29037171d8b1f17ee51c9f74f7563722 Author: Alan Garny Date: Thu Apr 10 16:34:28 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit a1cd5c40753689640e0f5cac7281cfdb88b2b486 Author: Alan Garny Date: Thu Apr 10 16:22:28 2014 +1200 Some minor cleaning up [ci skip]. commit 7051504816212a059e51a3cf0f2df58e0f7941c3 Author: Alan Garny Date: Thu Apr 10 15:47:43 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit a6e0c7c8eb41d675843c410b1741b09fc4a1426d Author: Alan Garny Date: Thu Apr 10 15:15:48 2014 +1200 Minor update to the developer documentation [ci skip]. commit b1dc529abc3d20cb3419e31508b463067b12bf5d Author: Alan Garny Date: Thu Apr 10 14:46:12 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 1c4d98282ebc7d4a94dbc017b20c578bf06c0a7a Author: Alan Garny Date: Thu Apr 10 14:33:03 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 0a492a373d8c345d325b44b6d21c579db4b36d49 Author: Alan Garny Date: Thu Apr 10 14:06:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit cafa3c073dd076e78d6a1551269d76fd66516e51 Author: Alan Garny Date: Thu Apr 10 11:50:45 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit c833de27ef2303ac4a4fbd5a4d5ee1a590c4fbdc Author: Alan Garny Date: Thu Apr 10 09:38:19 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b5845a20bb895f8d2a7e70e1bff6238b1c0bcbf5 Author: Alan Garny Date: Wed Apr 9 18:41:17 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 09e96a7b14bf5d472e290485c52f64108195331e Author: Alan Garny Date: Wed Apr 9 17:29:13 2014 +1200 Some minor cleaning up [ci skip]. commit f15dc8556fdb062f901faf23e5c6b13f94e46672 Author: Alan Garny Date: Wed Apr 9 17:20:44 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 96cb31d4d22da013811cfc423ace0e034b459acb Author: Alan Garny Date: Wed Apr 9 17:10:58 2014 +1200 Some minor cleaning up [ci skip]. commit 999998d6d1989fa84b3055661046a8aa4c710479 Author: Alan Garny Date: Wed Apr 9 16:43:35 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit dc8ce2c2fb6c6d86c24df20527d93641452631ac Author: Alan Garny Date: Wed Apr 9 16:33:38 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b24e32f59aa64ca260ff2b365196f1b9f7379c48 Author: Alan Garny Date: Wed Apr 9 16:22:51 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 25934281d81cc70f0a5c0e26a857835ede72a439 Author: Alan Garny Date: Wed Apr 9 16:07:19 2014 +1200 Some minor cleaning up [ci skip]. commit ae7e74d21ee8229c790d00b3841b99a50cea80c6 Author: Alan Garny Date: Wed Apr 9 15:06:07 2014 +1200 Some minor cleaning up [ci skip]. commit 67f3ff322d682575c706de8eef7017f4596bc6e5 Author: Alan Garny Date: Wed Apr 9 14:52:59 2014 +1200 Oops, actually need to enable/disable our find spacer [ci skip]. commit a090235fecad5622415ce8a19a30c7344d53c0f8 Author: Alan Garny Date: Wed Apr 9 13:50:15 2014 +1200 Some minor cleaning up [ci skip]. commit d716133985b6fc366c5077aa61cbd06aaecda421 Author: Alan Garny Date: Wed Apr 9 13:33:03 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit facbbff04243c1e4d043510416989bd8e2bc5b67 Author: Alan Garny Date: Tue Apr 8 09:46:59 2014 +0200 Fixed some small build issues on Windows. commit d14db932dd80a7df45eb17a3f918d84be3242577 Author: Alan Garny Date: Tue Apr 8 19:19:19 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit d5dad237d201e45c5c82c1370309a904ed1f8e2c Author: Alan Garny Date: Tue Apr 8 18:51:52 2014 +1200 Some minor cleaning up [ci skip]. commit 872d3228ef03d0d4d3f426afea39f2d55eaa3748 Author: Alan Garny Date: Tue Apr 8 17:59:42 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b60d0a4a290e380ab71a6f05122ccffd1bc511ae Author: Alan Garny Date: Tue Apr 8 16:40:53 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit a7245389c9eaa55ab9740521f35bb93484cdf434 Author: Alan Garny Date: Tue Apr 8 16:21:07 2014 +1200 Some minor cleaning up [ci skip]. This now looks OK using Qt 5, so… commit 4725082d7efdaf4c99319e3a17fcf9e6e6b0832c Author: Alan Garny Date: Tue Apr 8 16:17:18 2014 +1200 Some minor cleaning up [ci skip]. commit 1baac84430ec67f279d9ca338abeaf7081b03b29 Author: Alan Garny Date: Tue Apr 8 15:11:48 2014 +1200 Some minor cleaning up [ci skip]. commit dda3ed1364e140a8c4addf6f3512d51b8652c24d Author: Alan Garny Date: Tue Apr 8 14:12:22 2014 +1200 Some minor cleaning up [ci skip]. commit b0eb4005ba2a10e1ab8b75be182544e86dd06669 Author: Alan Garny Date: Tue Apr 8 12:31:45 2014 +1200 Some minor cleaning up. commit 156c3f5d471ae4ed6de28b35dd4e0fc07ef9f8f0 Author: Alan Garny Date: Tue Apr 8 12:20:34 2014 +1200 Minor update to our user documentation [ci skip]. commit f04c187e3551b6dff2e3b813afaa64184552ec1d Author: Alan Garny Date: Tue Apr 8 12:15:35 2014 +1200 Done with adding support for remote files in the command line version of the CellMLTools plugin (closes #325). commit 766a7c96d5884d7edfca504619609a8cf796dbcf Author: Alan Garny Date: Tue Apr 8 12:04:22 2014 +1200 Added a test to our CellMLTools plugin. commit f74c23ebba73eb74fe5f17a91956dcc8443002e0 Author: Alan Garny Date: Tue Apr 8 11:57:18 2014 +1200 Some minor cleaning up [ci skip]. commit 46fa83ea364c71cc870c595bf38260a425163a60 Author: Alan Garny Date: Mon Apr 7 18:56:04 2014 +1200 Some minor cleaning up. commit 605073b4d93c9598a79295577b2271e48dfa962e Author: Alan Garny Date: Mon Apr 7 18:21:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 4b9474a1e36330e241319c674b09d35ed681d78e Author: Alan Garny Date: Mon Apr 7 16:00:39 2014 +1200 Some minor cleaning up [ci skip]. commit df7a0f30e4eab5f57a8ea131272a68e9b640b704 Author: Alan Garny Date: Mon Apr 7 15:40:28 2014 +1200 Some minor cleaning up. commit 00abe041158e2cb33601699d565511a48d5a49f6 Author: Alan Garny Date: Mon Apr 7 14:32:40 2014 +1200 Some minor cleaning up [ci skip]. commit c5fc975ba32f33f41f16a2dacdc7c6f0740a03f0 Author: Alan Garny Date: Mon Apr 7 14:32:01 2014 +1200 Some minor cleaning up [ci skip]. commit ba513179e005abba0a48398ec080fa72c264fb27 Author: Alan Garny Date: Mon Apr 7 14:17:55 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 2a760adbf9808d0162b77baf778341d8f8192804 Author: Alan Garny Date: Mon Apr 7 13:48:47 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit afc43778c8c9815f5fa9508b0c44b0d9713df2a4 Author: Alan Garny Date: Mon Apr 7 13:36:50 2014 +1200 Some minor cleaning up [ci skip]. commit 5b084bf0e3af2f91e8e8369640a8167c36b3aa4d Author: Alan Garny Date: Mon Apr 7 09:37:43 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 5317a9932db7f8601647e997358a25bce726baa5 Author: Alan Garny Date: Sun Apr 6 23:15:21 2014 +0200 Minor fix to get the console version of OpenCOR to build on Windows. commit 903f34ccff55bd5ce4aac9b39d8e56db81b9e052 Author: Alan Garny Date: Fri Apr 4 18:41:49 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b2a0e7b4602fc70031ca808ae555f838d116dbee Author: Alan Garny Date: Fri Apr 4 16:21:50 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit fed75a246c0db12ce0c188e03e2a73fcbac0ec37 Author: Alan Garny Date: Fri Apr 4 15:17:20 2014 +1300 Done supporting remote files in recent files (closes #324). commit 42a005d8a18a948d35255c44dda4c6b89be246dc Author: Alan Garny Date: Fri Apr 4 15:02:36 2014 +1300 Slight overlooks regarding issue #313 [ci skip]. commit bbccaf617e543764c6282378c47b4a97141f9f4b Author: Alan Garny Date: Fri Apr 4 15:00:56 2014 +1300 Some minor cleaning up [ci skip]. commit 30b563ad3522e60249ab07d5d94c6ef20d22535f Author: Alan Garny Date: Fri Apr 4 14:18:09 2014 +1300 Some minor cleaning up [ci skip]. commit a2364254a277e49cf3dcdd42353d0f4b4cc8d59f Author: Alan Garny Date: Fri Apr 4 12:51:57 2014 +1300 Done supporting the opening of remote imports in the CellML Annotation view (closes #323). commit 27d41efb5b173ddf4d23729c3ae66e2f425b669c Author: Alan Garny Date: Fri Apr 4 11:43:44 2014 +1300 Some minor cleaning up [ci skip]. commit 029cdc93c2e437d4eb607f593bc72293e060c745 Author: Alan Garny Date: Fri Apr 4 11:40:41 2014 +1300 Some minor cleaning up. commit df4eb8ae274a75f5195d0868136c3363e0c02411 Author: Alan Garny Date: Fri Apr 4 11:26:55 2014 +1300 Done with opening a remote file (closes #313). commit 2f256c9154997668f0718c1660d2dabe1b7425c5 Author: Alan Garny Date: Fri Apr 4 11:18:47 2014 +1300 Some minor cleaning up. commit 124f4069f47e1979b02ec9073f7e5871c8edfa88 Author: Alan Garny Date: Fri Apr 4 11:05:03 2014 +1300 Some work towards opening a remote file (#313). commit d500b418a280bfa3b808db7c4904bd46c0f2c329 Author: Alan Garny Date: Fri Apr 4 11:03:58 2014 +1300 Some minor cleaning up. commit bb200022a3e9d44f1ed838a158bc75ef374730db Author: Alan Garny Date: Fri Apr 4 10:20:25 2014 +1300 Addressed an issue with QThreadStorage due to a QNetworkAccessManager object getting deleted too late. commit fd9ba753d7f0a68aeb1efc0cf007f34fb4d151af Author: Alan Garny Date: Fri Apr 4 10:01:51 2014 +1300 Some work towards opening a remote file (#313). commit bf5c6d43bce8bface3fd8fcc0eb0221dc1f12e72 Author: Alan Garny Date: Fri Apr 4 09:57:43 2014 +1300 Oops, got commit ddd1f8e112a2eaf07ecc71e79571280534ff5d8a slightly wrong [ci skip]. commit 718a3706b5048e037141861460a63da966e2994d Author: Alan Garny Date: Thu Apr 3 19:28:32 2014 +1300 Some work towards opening a remote file (#313). commit a0784a7115865351036dd2b5eff23241ac9b07f9 Author: Alan Garny Date: Thu Apr 3 18:57:34 2014 +1300 Some minor cleaning up [ci skip]. commit 5dde045bc36c2ebcc984b845a895fd874be25dbc Author: Alan Garny Date: Thu Apr 3 18:05:35 2014 +1300 Some work towards opening a remote file (#313). commit 6c607136d229d0ae8ce565c2072589f114e8cc61 Author: Alan Garny Date: Thu Apr 3 17:44:58 2014 +1300 Some minor cleaning up. commit f4f940d407bb6e1dcd119cfd1f0d18fe9d44a463 Author: Alan Garny Date: Thu Apr 3 17:43:21 2014 +1300 Some minor cleaning up. commit dd819a3beccffff3d6f15b8e26e3b47f9256a9db Author: Alan Garny Date: Thu Apr 3 16:52:20 2014 +1300 Fixed the issue with the status bar not getting reset when a file in, say, Raw view gets closed (closes #322). commit 53cec64c4b5ee2b4e74c09cb660c733da5e58807 Author: Alan Garny Date: Thu Apr 3 16:37:54 2014 +1300 Fixed the issue with reloading a locked file while in Raw or Raw CellML view (closes #321). commit 4de37f98fbf68934819ae40aaef34d98ef248030 Author: Alan Garny Date: Thu Apr 3 15:41:26 2014 +1300 Fixed the issue with reloading a file and then switching to an(other) editing view (closes #320). commit 9187ed591e8bed8e84bf4cc13b0e5a03770cbd96 Author: Alan Garny Date: Thu Apr 3 15:05:20 2014 +1300 Some work towards opening a remote file (#313). commit e60d3f578e75cdfcd8309019924e6b2cde1af24c Author: Alan Garny Date: Thu Apr 3 14:04:31 2014 +1300 Some work towards opening a remote file (#313). commit 7d0b9587b399e497df9ac15efe0be4562b11d5a7 Author: Alan Garny Date: Thu Apr 3 13:03:48 2014 +1300 Some minor cleaning up [ci skip]. commit a94fd0f340492c3b8cb8ce0db4cbd39ea1109ecc Author: Alan Garny Date: Thu Apr 3 11:50:24 2014 +1300 Some work towards opening a remote file (#313). commit 4a8ff6636f8dc0c86d693a1c8fb09b90cb34788b Author: Alan Garny Date: Thu Apr 3 10:53:25 2014 +1300 Some work towards opening a remote file (#313). commit 1e436c32fa2bcd9d97b2696a4b850316e5e93572 Author: Alan Garny Date: Thu Apr 3 10:06:51 2014 +1300 Some work towards opening a remote file (#313). commit ae33465892158239a3231e8bcdb60dea5dcc89aa Author: Alan Garny Date: Thu Apr 3 09:28:40 2014 +1300 Some minor cleaning up. commit a24370ce0ee37a7db2ca7cb2065db996ad7236a9 Author: Alan Garny Date: Wed Apr 2 17:57:28 2014 +1300 Some minor work on OS X packaging [ci skip]. commit 83b8851266971fb4c06854db8e62f5ffe9b0cc4a Author: Alan Garny Date: Wed Apr 2 17:45:49 2014 +1300 Some work towards opening a remote file (#313). commit 1e74524dd799ff53f5493af615c7a63ad56ad81b Author: Alan Garny Date: Wed Apr 2 17:28:51 2014 +1300 Done removing the CentralWidget and DockWidget dependencies from the GUI interface (closes #319). commit 628e50b6a3351cfc19eedf0d8050175b49aedc15 Author: Alan Garny Date: Wed Apr 2 15:55:44 2014 +1300 Some work towards opening a remote file (#313). commit 69db3651d728c6db8156735fe3d61d7c86211cf7 Author: Alan Garny Date: Wed Apr 2 14:48:48 2014 +1300 Issue #318 was more about improving than actually fixing something [ci skip]. commit 094d537ca4a76da62004390eabb533f6c123fec9 Author: Alan Garny Date: Wed Apr 2 14:08:28 2014 +1300 Got a bit carried away in my last commit. commit f468a3e7a1b7002c5ef2b5ce98e24713cef8ff1a Author: Alan Garny Date: Wed Apr 2 13:55:50 2014 +1300 Some minor cleaning up. commit 3d1b17b1114184df63b81670a4186d1166afe9ff Author: Alan Garny Date: Wed Apr 2 11:45:57 2014 +1300 Some work towards opening a remote file (#313). commit fe37c3ad8da48adb62c3ec3db033b98ed0d4cbe1 Author: Alan Garny Date: Tue Apr 1 19:01:20 2014 +1300 Fixed the issue with expanding/collapsing a node in a tree view (closes #318). commit e51079ecb35a959a6204ac369921e73072f36d1f Author: Alan Garny Date: Tue Apr 1 18:43:02 2014 +1300 Some minor cleaning up. commit a2d3baea821e4aefb1bf528478862870ef407aef Author: Alan Garny Date: Tue Apr 1 12:51:32 2014 +1300 Some minor cleaning up [ci skip]. commit 0be8b31710e4d9c6312549353308ace6e9d56593 Author: Alan Garny Date: Tue Apr 1 12:14:51 2014 +1300 Some work towards opening a remote file (#313). commit e0a012d92d23145473271c24112dc5a59bdb3798 Author: Alan Garny Date: Tue Apr 1 12:14:32 2014 +1300 Some minor cleaning up [ci skip]. commit 3f5ee69a56f62ad85648c069164ab9bfe48e3dc0 Author: Alan Garny Date: Tue Apr 1 11:06:09 2014 +1300 Some work towards opening a remote file (#313). commit ddd1f8e112a2eaf07ecc71e79571280534ff5d8a Author: Alan Garny Date: Tue Apr 1 11:06:01 2014 +1300 Some minor cleaning up [ci skip]. commit 5171633b524f1e66b541f11e14ed91802b1192f6 Author: Alan Garny Date: Mon Mar 31 18:44:33 2014 +1300 Some work towards opening a remote file (#313). commit af8ddc0e1ce0141d0c5c4d860b6fff774e4266e3 Author: Alan Garny Date: Mon Mar 31 18:30:56 2014 +1300 Some work towards opening a remote file (#313). commit beaada6bf382a42f1546e0bd5349fa96b7941a81 Author: Alan Garny Date: Mon Mar 31 18:13:18 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit f30504fa4e4e316f5f832b54a9fde853b1dd55df Author: Alan Garny Date: Mon Mar 31 17:02:48 2014 +1300 Some minor cleaning up [ci skip]. commit 09777a123ce8b724107fee2397c06e748e7e6af7 Author: Alan Garny Date: Mon Mar 31 16:41:36 2014 +1300 Some minor cleaning up. commit ca71e86b76fccb60e631326a529926cbdfed6564 Author: Alan Garny Date: Mon Mar 31 16:24:31 2014 +1300 Some minor cleaning up [ci skip]. commit dd76d8cd58bad9715981e12357daaf47c90b00c3 Author: Alan Garny Date: Mon Mar 31 16:14:52 2014 +1300 Some work towards opening a remote file (#313). commit 7054f39552cccb2d6ce36021200d44a8de8e9c99 Author: Alan Garny Date: Mon Mar 31 15:51:51 2014 +1300 Some minor cleaning up. commit abed9df3ec0a7baf777a93c2b80088e015bba5ca Author: Alan Garny Date: Mon Mar 31 15:39:37 2014 +1300 Done with exporting a CellML file to some user format (closes #312). commit 01fdd784d7676518ae38489e48856a79b041a326 Author: Alan Garny Date: Mon Mar 31 12:45:27 2014 +1300 Fixed an issue with the removal of a graph panel that is selected for another file (closes #315). commit ef94e9ae597cfcb35fcc03bcbddf62b4f111040e Author: Alan Garny Date: Mon Mar 31 11:17:01 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit 2241e8f5979a5cf19e6ea60dbbf82afe96227206 Author: Alan Garny Date: Mon Mar 31 11:14:49 2014 +1300 Done with allowing the use of Ctrl+= to zoom in text in QScintillaWidget (closes #314). commit eed0371314f52ff3f4ca7cea3cc53a90c3b0583c Author: Alan Garny Date: Sat Mar 29 13:41:01 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit 6b0bc42aa8fcb3438d9d188436b50a8bd4cba98e Author: Alan Garny Date: Fri Mar 28 19:08:52 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit 782ca57dd7e1ba9f660afcfb5ad830edbe267b35 Author: Alan Garny Date: Fri Mar 28 19:02:42 2014 +1300 Some minor cleaning up [ci skip]. commit fef3dfcb343050db3b82ce85d615ef1f7fc9c172 Author: Alan Garny Date: Fri Mar 28 18:38:42 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit 6f5173dd423f7a5d4ec9e8bf2a25f34417a84284 Author: Alan Garny Date: Fri Mar 28 06:36:08 2014 +0100 Some work towards exporting a CellML file to some user format (#312). commit c33ad09232a959d87ce540b88c57a3aff380b558 Author: Alan Garny Date: Fri Mar 28 18:13:22 2014 +1300 Some work towards exporting a CellML file to some user format (#312). It now works from the command line. commit 8316377bdd5d11974b11f979cefc47e6a83af4a7 Author: Alan Garny Date: Fri Mar 28 17:18:22 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit ad2efdfe412b67aaad19efd8c05978f48c2b655c Author: Alan Garny Date: Fri Mar 28 16:24:01 2014 +1300 Well, we actually need that TRAVIS_CI check... commit 5fac6be700743a2fe89f1d04dd466f57956f08ee Author: Alan Garny Date: Fri Mar 28 15:19:38 2014 +1300 Some work towards exporting a CellML file to some user format (#312). commit 12e6e9bc60ce06b2d9444a2dcbd60f3319948705 Author: Alan Garny Date: Fri Mar 28 15:03:12 2014 +1300 Some minor cleaning up. commit da0f0e86c5042da7e56bcac9c63c1976db63cb34 Author: Alan Garny Date: Fri Mar 28 14:33:15 2014 +1300 Got confirmation that the previous commit fails on Travis CI. The CellML Tools tests fail. commit 1fc1680cbd6f16a6c7cdbbb7cbb6a886525e95b2 Author: Alan Garny Date: Fri Mar 28 14:27:13 2014 +1300 Just for testing: this should fail on Travis CI. commit 7df648f910063640216757e402d22d6fd18bdab9 Author: Alan Garny Date: Fri Mar 28 14:20:35 2014 +1300 Some minor updates for our CI strategy. commit 7b8c1cbbf9779b068ea1f6e4082e2919b77640fa Author: Alan Garny Date: Fri Mar 28 14:18:33 2014 +1300 Minor update to our Travis CI file. commit cc1069fd9f9a13e4cf09a5f64f9bfb7e0799d12b Author: Alan Garny Date: Fri Mar 28 13:54:32 2014 +1300 Some minor cleaning up following our improved building of tests. commit 1a9a42b62d8f363d497869fd76e149b1811e0bdd Author: Alan Garny Date: Fri Mar 28 13:42:07 2014 +1300 Fixed the building of tests on Windows. The Core tests were not building properly. commit 75cb7bf4808f7e95ddc12862c4d231dcb7d7f853 Author: Alan Garny Date: Fri Mar 28 11:11:13 2014 +1300 Minor update to the developer documentation [ci skip]. commit 4e5d6294b3bd2ab86289e2944ca5f239b47de589 Author: Alan Garny Date: Thu Mar 27 07:10:17 2014 +0100 Some minor cleaning up. commit 3c5c6279f6b5529ee23817baaa82927a809d2585 Author: Alan Garny Date: Thu Mar 27 18:21:26 2014 +1300 Some work towards the export of a CellML file to a predefined format (#312) [ci skip]. commit 54d5dea15d25d035a11367c36607bb2dfdc7b52d Author: Alan Garny Date: Thu Mar 27 14:49:33 2014 +1300 Fixed the issue with the wrong equation being potentially rendered in the viewer of the Raw CellML view (closes #311). commit ced7bbdf926302ff1010ddad04d59308cbf64a95 Author: Alan Garny Date: Thu Mar 27 14:08:02 2014 +1300 Added a couple of Core CLI utilities, as well as created more Core tests. commit 626101704d8cfd911d9d9d026ff4f1fa42d9ec8c Author: Alan Garny Date: Thu Mar 27 11:46:27 2014 +1300 Added some tests for the Core plugin. commit f1315efa0134913c3e399dc3e7ab461ab4548367 Author: Alan Garny Date: Thu Mar 27 11:25:57 2014 +1300 Some minor cleaning up [ci skip]. commit 53bf8be1384de3489a0b0baac15515e6dc354762 Author: Alan Garny Date: Wed Mar 26 17:59:15 2014 +1300 Fixed the issue with the wrong message being displayed after adding a term directly and removing it straightaway (closes #310). commit 7e15ea39af84071e2476195ee8d4a6935435fbe5 Author: Alan Garny Date: Wed Mar 26 17:58:20 2014 +1300 Some minor cleaning up [ci skip]. commit 93a01e392fee2f10a3d6719d92d9df27fdee7086 Author: Alan Garny Date: Wed Mar 26 16:40:53 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit daec3ee8497772094a43be815f1924a7d14baff4 Author: Alan Garny Date: Wed Mar 26 15:22:20 2014 +1300 Some minor cleaning up [ci skip]. commit fa668533e34f2538f4076c05c77c3fbed3737aed Author: Alan Garny Date: Wed Mar 26 13:37:03 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 47a0d40b1ddb37289241c22c5dd229f0de5dc1a7 Author: Alan Garny Date: Wed Mar 26 10:35:03 2014 +1300 Slight update to our developer documentation [ci skip]. commit f72410c6ba8a183e0175bf047056567a6a747239 Author: Alan Garny Date: Tue Mar 25 19:10:40 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 997dcb947893f64fbfb44c3322cd6492801cd94b Author: Alan Garny Date: Tue Mar 25 19:02:57 2014 +1300 Some minor cleaning up. commit 20f8230403b8d5a74ce254849a71de2550f32222 Author: Alan Garny Date: Tue Mar 25 18:50:31 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261) [ci skip]. commit 6f6d28a6d04b95dd8801f6ed1a26f8d83978323c Author: Alan Garny Date: Tue Mar 25 18:48:47 2014 +1300 Prevent our tab bars (in our central widget) from getting the focus. Indeed, in some cases, when pressing the Tab key a tab bar may get the focus while we really don’t want that (it doesn’t look ‘neat’, especially on OS X). commit 1c0ac45069f1bb6dbf22b029fb07f47c5f67db03 Author: Alan Garny Date: Tue Mar 25 18:29:47 2014 +1300 Some minor cleaning up [ci skip]. commit 91b3ff64644bb5e2d4b09aeda6d07093a163fc05 Author: Alan Garny Date: Tue Mar 25 18:05:59 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit dc68e096301e2f8f88289591f015e05b09b2da6c Author: Alan Garny Date: Tue Mar 25 17:04:34 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 5b7d07828b4fac3b0597ea8efbbb44f673c22f01 Author: Alan Garny Date: Tue Mar 25 16:26:59 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit c939c60a3bf63b55fff651387aa00a80a5549f37 Author: Alan Garny Date: Tue Mar 25 16:14:03 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b02b8aec6536757385d16cc0aa6e8121536e305d Author: Alan Garny Date: Tue Mar 25 15:55:25 2014 +1300 Some minor cleaning up [ci skip]. commit 964b77b5c7b02748230a85ae5de47c1d690c0e63 Author: Alan Garny Date: Tue Mar 25 15:17:38 2014 +1300 Some minor improvements to our GUI interface. This arose from trying to debug something by creating a test view that doesn’t inherit from CommonWidget, which someone else might very well decide to do too, so… commit 4aadeb3922c2624dd2d58b4bc4a4041b8571f34f Author: Alan Garny Date: Tue Mar 25 11:42:46 2014 +1300 Some minor cleaning up [ci skip]. commit 9dda03830a637d7a9a88ec9ff71aadee908dc8e5 Author: Alan Garny Date: Tue Mar 25 09:45:57 2014 +1300 Some minor cleaning up. commit aa650017de244e5e2d5a42579561fc819927dd73 Author: Alan Garny Date: Tue Mar 25 09:35:49 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit b9b449ebc33ce25293ae84afd4b2ee2a32c043e1 Author: Alan Garny Date: Mon Mar 24 18:55:10 2014 +1300 Some minor cleaning up [ci skip]. commit fdd5b3662486a8b234cba1f7658bc59175255bb0 Author: Alan Garny Date: Mon Mar 24 17:56:08 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 6bfb1e8fafc5736a3792e8645c2842989b909947 Author: Alan Garny Date: Mon Mar 24 17:34:34 2014 +1300 Fixed the issue with removing some unrecognisable metadata in the CellML Annotation view (closes #309). commit f6f1f4a2a330f8528bed928ef4117de6d8304c9f Author: Alan Garny Date: Mon Mar 24 16:47:38 2014 +1300 Some minor cleaning up [ci skip]. commit 63605ea52381c254c27083647f63a7b9f638a612 Author: Alan Garny Date: Mon Mar 24 16:47:27 2014 +1300 Slight update to the user documentation [ci skip]. commit e82f960dcd275954f87b94ceee2afd2c920090ed Author: Alan Garny Date: Mon Mar 24 15:27:44 2014 +1300 Fixed the issue with changing qualifiers resetting the list of possible ontological terms in the CellML Annotation view (closes #308). commit 3fcff6b1dc20152396c2cdd2a893164ea14cef99 Author: Alan Garny Date: Mon Mar 24 11:31:42 2014 +1300 Some minor cleaning up [ci skip]. commit ae3723570dfae8a445a312e5ae3112c2dec4dff6 Author: Alan Garny Date: Fri Mar 21 17:28:23 2014 +1300 Some minor cleaning up. commit d8510d954973e1a0685a74468eb168bead0beccb Author: Alan Garny Date: Fri Mar 21 17:18:00 2014 +1300 Some minor cleaning up. commit b1c2fe5ec6399334632a52607590b5c74f0c9ab6 Author: Alan Garny Date: Fri Mar 21 17:07:17 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 391b78a7c847e68a7f4733c119572875f57277dc Author: Alan Garny Date: Fri Mar 21 13:52:02 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 845f19ae19e1384ed5f4bf8dafe5e89dd4937524 Author: Alan Garny Date: Fri Mar 21 11:54:56 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget (#261). commit 603425e6edc7840b85a5ef6bd86f361d665d8ea3 Author: Alan Garny Date: Fri Mar 21 11:49:25 2014 +1300 Some minor cleaning up [ci skip]. commit 569b3d91ee89f54129108c81bcc05e03a39c50a4 Author: Alan Garny Date: Fri Mar 21 11:02:39 2014 +1300 Some minor cleaning up [ci skip]. commit 49f853eda867d9bb9b53f5ad256151b27cb3c632 Author: Alan Garny Date: Fri Mar 21 10:46:53 2014 +1300 Slight update to our developer documentation [ci skip]. commit ab5d171e0b99350e01587592448d5278e2a31974 Author: Alan Garny Date: Fri Mar 21 10:34:45 2014 +1300 Some minor cleaning up [ci skip]. commit 92019f7539c7c6f85bf88e1cb706f8d623450780 Author: Alan Garny Date: Thu Mar 20 18:42:29 2014 +1300 Some minor cleaning up. commit 575655ff3a53ed3fe9b7c568d21ad2cc70eab28f Author: Alan Garny Date: Thu Mar 20 18:34:18 2014 +1300 Some minor cleaning up [ci skip]. commit db32b6adbf947fb11a9573fd418114c104cf00e3 Author: Alan Garny Date: Thu Mar 20 05:00:32 2014 +0100 Some minor cleaning up [ci skip]. commit 26898e2149dbeca966beb0c9c3e069cd9bd6d029 Author: Alan Garny Date: Thu Mar 20 16:53:23 2014 +1300 Some minor cleaning up [ci skip]. commit a1d152c8d8559ec4d281a38e0d52e49ad0a9b3b3 Author: Alan Garny Date: Thu Mar 20 16:48:18 2014 +1300 Some minor cleaning up [ci skip]. commit 117aa3f4460a129b1505cb665d6f98304291931c Author: Alan Garny Date: Thu Mar 20 16:34:24 2014 +1300 Some minor cleaning up [ci skip]. commit 6003fe62c5ee1d13e6c6dfb6dde078747fbf3263 Author: Alan Garny Date: Thu Mar 20 15:57:41 2014 +1300 Some minor cleaning up [ci skip]. commit cd30d3344cd53ea47d5c82154588f505e5bc74ca Author: Alan Garny Date: Sat Mar 15 16:45:30 2014 +0100 Updated QScintilla to version 2.8.1. commit 0e0b5e953e752eef5285596e3da6d9b7150025b3 Author: Alan Garny Date: Sat Mar 15 11:59:55 2014 +0100 Re-enabled the Pretty CellML view plugin for our development [ci skip]. commit 0dcf10fb423c89c59234db9cd39f42792101bf9a Author: Alan Garny Date: Sat Mar 15 11:59:00 2014 +0100 New snapshots. commit b73dc40c8039744829c764db8ed9b807fa215310 Author: Alan Garny Date: Sat Mar 15 11:35:58 2014 +0100 Updated various CMake files so that QtXmlPatterns gets properly referenced on OS X. commit c2388128ebe18abcb2c815b6e9412635555db383 Author: Alan Garny Date: Fri Mar 14 19:47:53 2014 +0100 Had forgotten to add XmlPatterns to the list of Qt modules needed for the Windows CLI version of OpenCOR [ci skip]. commit 9ab1938a4c3eb0f59b446eec367d8684ca5118dc Author: Alan Garny Date: Fri Mar 14 19:26:41 2014 +0100 New snapshots. commit f28fb95abf2636ae146ce79b28d8888f0c29e8bc Author: Alan Garny Date: Fri Mar 14 19:19:50 2014 +0100 Done with using Greek symbols in our Viewer widget (closes #303). commit 57788f9998a9bd16c83cf5827c7ed4d41d31e41d Author: Alan Garny Date: Fri Mar 14 18:46:33 2014 +0100 Some minor cleaning up [ci skip]. commit 9dda4895c19d95c70d43ba0bbc1807906c74b897 Author: Alan Garny Date: Fri Mar 14 17:51:32 2014 +0100 Improved the rendering of subscripts and superscripts in Qwt. commit bb3cbbc2dcc2ceba17d374e87e9841d03cc9cfc8 Author: Alan Garny Date: Fri Mar 14 17:23:12 2014 +0100 Some work towards using Greek symbols in our Viewer widget (#303). commit 0e78d2c97eda99c976d57b0e29c14fd91b300380 Author: Alan Garny Date: Fri Mar 14 16:41:43 2014 +0100 Done with using subscripts in our Viewer widget (closes #302). commit 463cba09db2ba39bb4074f7638ead7d72d826aa9 Author: Alan Garny Date: Fri Mar 14 15:10:33 2014 +0100 Some work towards using subscripts in our Viewer widget (#302). commit 993bcc754a02cdacd6f47b564966f479c980bd3a Author: Alan Garny Date: Fri Mar 14 14:55:13 2014 +0100 Some work towards using subscripts and Greek symbols in our Viewer widget (#302 and #303). commit f7b29ff17f8ce2ddc44456adf815d7f9d4e8ea78 Author: Alan Garny Date: Fri Mar 14 14:04:22 2014 +0100 Improved the rendering of subscripts and superscripts in Qwt. commit c988348c7b32ffb74bc6f76619f36d0de2f0b004 Author: Alan Garny Date: Fri Mar 14 11:39:47 2014 +0100 Some minor cleaning up. commit 389cb2569344a1dca3d558742b05bf5ac4c49ec7 Author: Alan Garny Date: Fri Mar 14 11:28:00 2014 +0100 Some minor improvement to our Viewer widget (#304). commit 2c0945378d0bd649f7375240d955d3f7d2221f7c Author: Alan Garny Date: Fri Mar 14 11:08:21 2014 +0100 Some work towards using subscripts in our Viewer widget (#302). commit be955ac1cfd78a9c04f3409be842cec9253a9f5a Author: Alan Garny Date: Fri Mar 14 11:04:03 2014 +0100 Some minor cleaning up. commit 6dda63ebd7f690eea9e69ea757b2b09e78fc1c63 Author: Alan Garny Date: Fri Mar 14 11:01:42 2014 +0100 Some work towards using subscripts in our Viewer widget (#302). commit 818af62f687d2647ddaea8b5fcaea2dfbb6ba29b Author: Alan Garny Date: Fri Mar 14 09:33:50 2014 +0100 Some work towards using Greek symbols in our Viewer widget (#303). commit b0ad8c022e80e289d7666abf78028cda83aac0ed Author: Alan Garny Date: Fri Mar 14 09:29:12 2014 +0100 Some work towards using Greek symbols in our Viewer widget (#303). commit f7fae691ab5c6420f824aebb10acdd391cbd973e Author: Alan Garny Date: Fri Mar 14 09:16:33 2014 +0100 Slight improvement to our Viewer widget (#304). commit edf77dec616e2fce093b0fef9acfa73a742d8131 Author: Alan Garny Date: Fri Mar 14 08:45:05 2014 +0100 Updated our copy of QScintilla to the latest snapshot available [ci skip]. commit 85cd6639f6dfee866adc8e0e933572b4e01b78b3 Author: Alan Garny Date: Thu Mar 13 17:58:57 2014 +0100 Some minor cleaning up. commit ae385186f99fc2c194844de91e56281be323f97f Author: Alan Garny Date: Thu Mar 13 17:50:29 2014 +0100 Some minor cleaning up [ci skip]. commit 891a661e1e7091bb5608833b9e59a15edb270cf2 Author: Alan Garny Date: Thu Mar 13 15:37:30 2014 +0100 Minor update to our copy of ctop.xsl [ci skip]. commit 5c84167e174a7316c9ac59b6479a4812f13389c3 Author: Alan Garny Date: Thu Mar 13 11:43:13 2014 +0100 Some minor cleaning up. commit 0a03b81f8875a6c327f64074f375338fd95746ed Author: Alan Garny Date: Thu Mar 13 09:09:41 2014 +0100 Some minor cleaning up. commit 4edabbf73bfb5b99c0d0af7993ec7d9a3f055a00 Author: Alan Garny Date: Wed Mar 12 19:41:56 2014 +0100 Done with adding support for digit grouping in our Viewer widget (closes #304). commit 7d583ff23244ca047445e6544ce9f5df622a58a8 Author: Alan Garny Date: Wed Mar 12 19:34:06 2014 +0100 Some minor cleaning up. commit 2aac03ed2cd8d0336ee9f058534a9787eb48a64f Author: Alan Garny Date: Wed Mar 12 17:10:10 2014 +0100 Some work towards adding support for digit grouping in our Viewer widget (#304). commit dd9fda1a4aef9be7581e7e72f02822ec579f6fa7 Author: Alan Garny Date: Wed Mar 12 16:48:21 2014 +0100 Some work towards adding support for digit grouping in our Viewer widget (#304). commit 98e8be43120d69f081051b4a4c6389152a72d3d8 Author: Alan Garny Date: Wed Mar 12 16:12:14 2014 +0100 Some minor cleaning up [ci skip]. commit 5e54711e4c3741581d5bbe87d4644a521b700944 Author: Alan Garny Date: Wed Mar 12 16:06:22 2014 +0100 Some minor cleaning up. commit 54e85e3318937d39a8765fdb779fe605eacaebe6 Author: Alan Garny Date: Wed Mar 12 15:57:17 2014 +0100 Some minor cleaning up [ci skip]. commit 5df328fc6e6c05e057726224ced8938c1cbc0ba2 Author: Alan Garny Date: Wed Mar 12 15:43:17 2014 +0100 Done with keeping track of the view used by a given file and this for all possible modes (closes #306). Also some minor cleaning up here and there, as well as various improvements to the code. Finally, also fixed an issue with changing modes not retrieving the ‘old’ view for the ‘new’ mode, this for a given file. commit 805a61ac8148430af74ba2b902925c0fed2bdb41 Author: Alan Garny Date: Wed Mar 12 10:45:36 2014 +0100 Only show our splash screen when in release mode (since it can get in the way when debugging) [ci skip]. commit c92961832c23aa329fc7ad93ea09ce31c2b585bf Author: Alan Garny Date: Tue Mar 11 15:31:53 2014 +0100 Some minor cleaning up [ci skip]. commit c175e7d764fbaf2376b28b204c24666cf1500231 Author: Alan Garny Date: Tue Mar 11 14:52:12 2014 +0100 Some minor cleaning up [ci skip]. commit feb538887579b3eccfaf41e8847829f2a39eb76c Author: Alan Garny Date: Tue Mar 11 14:47:26 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes (#306). commit ad042457ebd01cedd92cb92ee21d8dc098dbf35c Author: Alan Garny Date: Tue Mar 11 14:45:43 2014 +0100 Some minor cleaning up [ci skip]. commit 6f8d2d927f790ac621f78a6202e4707d046fba33 Author: Alan Garny Date: Tue Mar 11 11:18:14 2014 +0100 Don'\''t need the viewRawName() interface in the end [ci skip]. commit fe2bb7f4274e8d6e9bc8fb842594107485e395fb Author: Alan Garny Date: Tue Mar 11 10:28:56 2014 +0100 Some minor cleaning up [ci skip]. commit 884ba3cb4d3d901020021abd4b1d1297270aa75d Author: Alan Garny Date: Tue Mar 11 10:20:58 2014 +0100 Some minor cleaning up [ci skip]. commit 67c4fd08b1606ce063edd326a086bae4e2011b43 Author: Alan Garny Date: Tue Mar 11 10:02:10 2014 +0100 Some minor cleaning up [ci skip]. commit 928a1e742a134e5c93e9eff9101dbbb7806af0fb Author: Alan Garny Date: Tue Mar 11 09:44:10 2014 +0100 Some minor cleaning up [ci skip]. commit c5a5959b0d7b57965430e4004a59e1b0d7418bb4 Author: Alan Garny Date: Tue Mar 11 08:39:12 2014 +0100 Slight update to the developer documentation [ci skip]. commit c629de4396226dbe77fa18a13eaa1470bb04d9ab Author: Alan Garny Date: Mon Mar 10 18:15:34 2014 +0100 Some minor cleaning up. commit e6ae7771d9d59a55719f904c0928da4099da3fda Author: Alan Garny Date: Mon Mar 10 18:02:36 2014 +0100 Some minor cleaning up. commit 71720c63fc8f5bb0a5a3535995f8b0e5395a0fbf Author: Alan Garny Date: Mon Mar 10 16:21:19 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes (#306). commit 0c1657771b78fa259c2729408ba90171638129e3 Author: Alan Garny Date: Mon Mar 10 15:52:24 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes (#306). commit 7a05de6a13bb41a64218acdf37e320c4fea1e564 Author: Alan Garny Date: Mon Mar 10 15:23:31 2014 +0100 Some minor cleaning up. commit b8c9b92c178304c51a75cf8dc129826d55e22022 Author: Alan Garny Date: Mon Mar 10 15:12:36 2014 +0100 Some minor cleaning up. commit ff47c9d71cce8a847202226e09e3c7ad86cd7113 Author: Alan Garny Date: Mon Mar 10 15:00:25 2014 +0100 Some minor improvement to our readTextFromFile() function. commit 9fb63b5d9d9f8ed985f6858abd97366896dc034a Author: Alan Garny Date: Mon Mar 10 13:49:27 2014 +0100 Done with making it possible for our Viewer widget to toggle its optimise font size feature, as well as keep track of its settings from one session to another (closes #305). commit 0e94c26795854938a386f85589d3b925ea16dfd5 Author: Alan Garny Date: Mon Mar 10 12:54:30 2014 +0100 Fixed a small issue with building on Windows. commit f69da5cf1d1cc8ff7ab827a432607f9ae11004e8 Author: Alan Garny Date: Mon Mar 10 11:55:34 2014 +0100 Some work on making it possible to toggle the optimise font size feature of our Viewer widget (#305). commit 2cf0403b3f9131109e63922c1f4c4832ba15e15a Author: Alan Garny Date: Mon Mar 10 10:32:21 2014 +0100 Some minor cleaning up. commit cb3041053478734ce2c1c9d276a2f50f8456c8de Author: Alan Garny Date: Mon Mar 10 09:48:35 2014 +0100 Some minor cleaning up. commit 63a91cce62950f1644260c6398539e24ba12d4c3 Author: Alan Garny Date: Sat Mar 8 18:42:15 2014 +0100 New snapshots. commit 03251368fc7cb811525aabe10dae0b635f94f70b Author: Alan Garny Date: Sat Mar 8 18:39:52 2014 +0100 Now using middle dots rather than invisible multiplication signs in our Viewer widget (closes #301). commit b809a09f311acb0027f5e16ac6628ea590271178 Author: Alan Garny Date: Sat Mar 8 18:37:57 2014 +0100 Now using middle dots rather than invisible multiplication signs in our Viewer widget (closes #301). commit 152b1117f3832a3bb4202313ed8cdf23099661d8 Author: Alan Garny Date: Sat Mar 8 18:31:36 2014 +0100 Fixed the issue with the Viewer widget and some mi elements not being in italics (closes #297). commit 06707199cd4bbdbd1eb4080db45003f73fdc6ebb Author: Alan Garny Date: Sat Mar 8 18:08:00 2014 +0100 Updated QScintilla to the latest snapshot available. commit d075b99184d0e03c0e004ae38ae420f8324ac873 Author: Alan Garny Date: Sat Mar 8 17:53:56 2014 +0100 Fixed the issue with the Viewer widget showing some extra space in some equations (closes #298). commit 6d463d86ff8a82167d667360e75743f279b04875 Author: Alan Garny Date: Sat Mar 8 17:13:30 2014 +0100 Fixed the issue with the Raw CellML view not always having its viewer updated (closes #300). commit bc2c2aab4c5aae87ba7aacbce24bb0d2737031a5 Author: Alan Garny Date: Sat Mar 8 16:56:34 2014 +0100 Fixed the issue with the Raw CellML view not properly extracting some Content MathML equations (closes #295). commit 992427932d09a7e0d5af0f76ad2f3c2f29f0c65f Author: Alan Garny Date: Sat Mar 8 14:49:28 2014 +0100 Fixed the issue that prevented the 2014-03-07 snapshot from working on a vanilla machine (closes #299). commit d5ebd25edb945933d2f57410358e378e37592df1 Author: Alan Garny Date: Sat Mar 8 00:16:32 2014 +0100 Fixed the issue with some plugin selections crashing OpenCOR on restarting (closes #296). commit d480bcdf69fa8c095caa2db094aaefb3530cdd5f Author: Alan Garny Date: Fri Mar 7 18:17:47 2014 +0100 Re-enabled the Pretty CellML view [ci skip]. commit ec88df88d58016648ae78131827cf01096ed62f3 Author: Alan Garny Date: Fri Mar 7 18:02:08 2014 +0100 New snapshots. commit 2a525bd620691d049b51174b0040d68e0a3bfa63 Author: Alan Garny Date: Fri Mar 7 17:53:34 2014 +0100 Oops, forgot to remove a debug trace [ci skip]. commit d11ab47d6797365c09bf8baa1fd8380285c7b251 Author: Alan Garny Date: Fri Mar 7 17:49:31 2014 +0100 Done with showing mathematical equations in the viewer of the Raw CellML view (closes #275). Note that things could improved, but at least we now have a first full working version of it. commit 56479f4e178dfc0a63ff4c07e0cbdfee2f7c6458 Author: Alan Garny Date: Fri Mar 7 15:16:38 2014 +0100 Some minor improvement to our QScintilla-based widget. commit b412bfb3899aea0ac1a6f3cfa5e1acddebf85908 Author: Alan Garny Date: Fri Mar 7 08:39:09 2014 +0100 Minor cleaning up [ci skip]. commit c11611255a27c82f0c972d9541c22dcdfb340ed5 Author: Alan Garny Date: Thu Mar 6 18:50:59 2014 +0100 Some minor cleaning up [ci skip]. commit 46d79804165632ef2e0343dab42d8d709454fd12 Author: Alan Garny Date: Thu Mar 6 17:26:20 2014 +0100 Some minor cleaning up [ci skip]. commit 56cdc45aeb85d024cd0484ca4ef27bed65189e43 Author: Alan Garny Date: Thu Mar 6 17:24:10 2014 +0100 Done improving the Content MathML to Presentation MathML conversion (closes #294). commit ca6f669e6076c12662f24afd659fa2c2bf774aeb Author: Alan Garny Date: Thu Mar 6 16:53:51 2014 +0100 Some work on improving the Content MathML to Presentation MathML conversion (#294). commit 341040052b91197e751dd557b679b44aa80fb68c Author: Alan Garny Date: Thu Mar 6 16:34:02 2014 +0100 Some documentation regarding issue #294 [ci skip]. commit a367c154610725988e1b0b41ccb21ff09f6cb1e7 Author: Alan Garny Date: Thu Mar 6 15:52:30 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 617dfb9b6eb1807ebce7d38d5ec874bc49549c57 Author: Alan Garny Date: Thu Mar 6 13:02:34 2014 +0100 Some minor cleaning up [ci skip]. commit d2e178c026110b4413d809f58fa016ee03650ed8 Author: Alan Garny Date: Thu Mar 6 11:29:42 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 1c996e7b2f165362f411910c929009d567d029fa Author: Alan Garny Date: Wed Mar 5 18:19:41 2014 +0100 Some minor cleaning up [ci skip]. commit 9c1174ebd111b7b37ef2f6a4576b24e1e90a6da5 Author: Alan Garny Date: Wed Mar 5 18:17:06 2014 +0100 Minor update to our developer documentation [ci skip]. commit 91d01fd4ef83b8639121220b90c02a6f53b134b3 Author: Alan Garny Date: Wed Mar 5 18:09:18 2014 +0100 Minor update to our developer documentation [ci skip]. commit 7db251ba871cb7c9ebfd48837cf79f842035bf56 Author: Alan Garny Date: Wed Mar 5 17:45:48 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 4711b4ef324c9d4bf6effa560cb5538c3ce50a4f Author: Alan Garny Date: Wed Mar 5 16:31:15 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit e45ddabfff2cb84a98d64a33bff7dc7b1567e9c6 Author: Alan Garny Date: Wed Mar 5 15:48:31 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit c005649ee144fb93b1d30f6cac43589127a40a16 Author: Alan Garny Date: Wed Mar 5 15:36:42 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 70df222bb3a125ee3fc5d411250063b28ada5640 Author: Alan Garny Date: Wed Mar 5 14:34:06 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit e4eb9ecebbea97e8faa4c9ba30a0a38e2f169e2a Author: Alan Garny Date: Wed Mar 5 14:14:13 2014 +0100 Minor update to our developer documentation [ci skip]. commit cac44606e33960ee117061084e123d82d9a47672 Author: Alan Garny Date: Wed Mar 5 14:08:46 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit df2992131293dafbf2b883006e03ab3bd05f3f86 Author: Alan Garny Date: Wed Mar 5 13:34:02 2014 +0100 Some minor cleaning up [ci skip]. commit 4ebc26133b589a14f6ab052153f9252308e0f4d3 Author: Alan Garny Date: Wed Mar 5 13:33:46 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit d5edd2cd683c0b19fb879c18df6c116672489af8 Author: Alan Garny Date: Wed Mar 5 11:00:23 2014 +0100 Some minor cleaning up. commit 9de3646d3c4676e77be8c72aa504160035bae362 Author: Alan Garny Date: Wed Mar 5 10:50:26 2014 +0100 Some minor cleaning up. commit 50c5e8c58887eddf316ca49bffd1f7eb9c5b41b2 Author: Alan Garny Date: Wed Mar 5 10:39:06 2014 +0100 Some minor cleaning up [ci skip]. commit c836dd6a0196d24f2f155f95d95be494a5bdf154 Author: Alan Garny Date: Wed Mar 5 10:37:31 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 12c6cc0c4e423aacc333d9814120e12baec96e54 Author: Alan Garny Date: Tue Mar 4 16:56:53 2014 +0100 Some minor cleaning up. commit d95b367364df74cb206083bd6a4d5b10fd86cc36 Author: Alan Garny Date: Tue Mar 4 16:49:45 2014 +0100 Some minor cleaning up. commit 3e00fb07e1a19a66fce4593ef6f75c81d09e60df Author: Alan Garny Date: Tue Mar 4 16:26:05 2014 +0100 Some minor cleaning up [ci skip]. commit 050c61998e031db1bfa9706ea6f22dde95b55738 Author: Alan Garny Date: Tue Mar 4 14:29:43 2014 +0100 Fixed the problem with QScintillaWidget-based view and the undo feature not allowing the widget to be modified again (closes #292). commit 94afc10e3864126f5810da8049d7d1705991b458 Author: Alan Garny Date: Tue Mar 4 13:37:50 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 5249c07979704d41fdc30b572473f254333a6834 Author: Alan Garny Date: Tue Mar 4 13:35:43 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 52e119020442a8d8e2a9bb174b834e6e3730b8ec Author: Alan Garny Date: Tue Mar 4 13:31:01 2014 +0100 Some minor cleaning up. commit 8560af7328c8f3b76951b70b9577e6f43f7ffbf7 Author: Alan Garny Date: Tue Mar 4 13:27:18 2014 +0100 Some minor cleaning up [ci skip]. commit 70ea6e0250edf94621c9b142cec8bf6648bf6ed4 Author: Alan Garny Date: Tue Mar 4 13:18:35 2014 +0100 Some minor cleaning up [ci skip]. commit 894a1568fa6d93be61aa70441a36d2bf69ec4516 Author: Alan Garny Date: Tue Mar 4 13:13:07 2014 +0100 Some minor cleaning up. commit 2dcfc8a15b1692ffad98ca00208ec48d56d2d36e Author: Alan Garny Date: Tue Mar 4 11:03:13 2014 +0100 Some minor cleaning up. commit 38b084633b79e6e49a50ecbed7217de6e5ac24a9 Author: Alan Garny Date: Mon Mar 3 19:30:38 2014 +0100 Some minor cleaning up [ci skip]. commit 983dde39da31224c86bc2989add69fcc79074643 Author: Alan Garny Date: Mon Mar 3 19:07:00 2014 +0100 Some minor cleaning up [ci skip]. commit e40598c448bdf1aaf0d3ec84db57ca3c8308768d Author: Alan Garny Date: Mon Mar 3 18:42:37 2014 +0100 Some minor cleaning up [ci skip]. commit e79d8ef788b15109c269a731a13991f11c23979b Author: Alan Garny Date: Mon Mar 3 18:27:07 2014 +0100 Done with having all our widget classes require a parent (closes #293). commit a8041dc14c8bab8d117fd9f3be9c3d13f5f40111 Author: Alan Garny Date: Mon Mar 3 16:49:55 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit f8231125252e1264c5321df97f981931030c1890 Author: Alan Garny Date: Mon Mar 3 16:39:42 2014 +0100 Some minor cleaning up [ci skip]. commit d98ac6037ee9f0f980746b018bf51d69eba12fd6 Author: Alan Garny Date: Mon Mar 3 14:49:44 2014 +0100 Some minor improvements to our Single Cell view simulation worker. commit b49a7f4c588f40f22190de39771d334a272941e2 Author: Alan Garny Date: Mon Mar 3 09:52:22 2014 +0100 Slight update to our Travis-CI script following the availability of Qt 5.2.1. commit 199193c26776cfbf26722873d2950c668372fa35 Author: Alan Garny Date: Mon Mar 3 09:43:25 2014 +0100 Slight update to our Travis-CI script following the availability of Qt 5.2.1. commit e20bff5fd86b3cc21cf96b622768667cdc04c00b Author: Alan Garny Date: Mon Mar 3 09:38:54 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit a2ddcf1768440090bc8686268e1e89506eb6e27f Author: Alan Garny Date: Sun Mar 2 12:07:47 2014 +0100 Fixed a small memory leak [ci skip]. commit b6c0ab9d8b266cd7ad71b959a18c1a6c9b895ee3 Author: Alan Garny Date: Sun Mar 2 09:50:34 2014 +0100 Some minor cleaning up [ci skip]. commit fd4491a29a71636276416096656b93de8d203cec Author: Alan Garny Date: Sun Mar 2 09:10:56 2014 +0100 Some minor cleaning up. commit 2f59ce5176dc6f673e93fc1bdf818807d43109a1 Author: Alan Garny Date: Sun Mar 2 01:12:47 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit ef414ce10eb518e5260c08edfe6dab5561747631 Author: Alan Garny Date: Sun Mar 2 01:05:38 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit cfb68e66f7c79065cfa00898d69222a6c8488444 Author: Alan Garny Date: Sat Mar 1 21:01:33 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit d7b208c5faf5ccd81d5912f2ab2951ee2a3e576f Author: Alan Garny Date: Sat Mar 1 21:01:06 2014 +0100 Some minor cleaning up [ci skip]. commit bc7e18f9967735483695c59536b96175c51622c5 Author: Alan Garny Date: Fri Feb 28 17:54:29 2014 +0100 Replaced some calls to repaint() with ones to update() since the former may result recursion in some cases (not that it has ever happened to us, but we never know how we might end up using some of our widgets in the future). Otherwise, regarding the progress bar widget, I couldn'\''t see any choppy progress on Windows. So, it might be that Qt improved things in that respect? Same with the file organiser widget: we don'\''t need to update the widget after trying to drop the same file again. commit c28d24326c8ce932d596e0d80d6944a3273a7257 Author: Alan Garny Date: Fri Feb 28 17:21:40 2014 +0100 Minor improvement to our Viewer widget. commit 0ba2d6d08be69cf7dab89c667441144cb80b3f18 Author: Alan Garny Date: Fri Feb 28 17:14:02 2014 +0100 Some minor cleaning up. commit f80cae0fb689176a750fe3f32a576ee322cb258f Author: Alan Garny Date: Fri Feb 28 16:59:28 2014 +0100 Some minor cleaning up. commit cc7e47f0dc19f9dd58b79be6cde9662e1eed2938 Author: Alan Garny Date: Fri Feb 28 16:39:00 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 7e3126f26a4c058bdbd52162ce828f59be4fc6f7 Author: Alan Garny Date: Fri Feb 28 16:38:44 2014 +0100 Some minor cleaning up [ci skip]. commit f308aad1644e4cc4276e253b1984c6ebfa292deb Author: Alan Garny Date: Fri Feb 28 16:28:35 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 9c7dbc3606dc9318cebbef2945f5cae276b0867a Author: Alan Garny Date: Fri Feb 28 16:28:30 2014 +0100 Some minor cleaning up [ci skip]. commit bd84c6f054e9f6fab097b239d958e1848a84d9a6 Author: Alan Garny Date: Fri Feb 28 16:13:58 2014 +0100 Some minor cleaning up. commit 5adddd456a7522d2a5e1d89b9e36a443287ba2c3 Author: Alan Garny Date: Fri Feb 28 15:44:01 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit 0390f9f3b348d28841e2cf2f33ca1d2f4766aa5d Author: Alan Garny Date: Fri Feb 28 12:56:59 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view (#275). commit bab4ad7f6a38db87cf6b63b0cec1883f13148d46 Author: Alan Garny Date: Fri Feb 28 10:59:20 2014 +0100 Fixed the issue with the CellML Annotation view not reloading a blank new file that has been saved after some contents has been written to it using, say, the Raw CellML view (closes #291). commit 093cc8240e62031f22cdb8d75e5f2055c4210f60 Author: Alan Garny Date: Thu Feb 27 18:45:50 2014 +0100 Fixed a small Windows build issue. commit a2875e5172a890490b51cdf29b85a99371b30451 Author: Alan Garny Date: Thu Feb 27 18:41:32 2014 +0100 Some minor cleaning up. commit 55139ee89e10502cc7187bf7ce4d493801bc6e1d Author: Alan Garny Date: Thu Feb 27 18:28:25 2014 +0100 Done with creating a blank new CellML 1.0/1.1 file (closes #279 and #280). Also some minor cleaning up. commit 611b2a9360fa039e5c131d4f96f74c5c0e5c30e9 Author: Alan Garny Date: Thu Feb 27 18:04:37 2014 +0100 Some minor cleaning up [ci skip]. commit 79cdb940c143097b8e101c84a441372d24e93286 Author: Alan Garny Date: Thu Feb 27 18:01:12 2014 +0100 Some minor cleaning up [ci skip]. commit b89cb27c0292baed3f4766453c71b6ef7b09f8f5 Author: Alan Garny Date: Thu Feb 27 17:53:42 2014 +0100 Some work towards creating a blank new CellML 1.0/1.1 file (#279 and #280). commit 1f4d1f807b03724ba75016958c07956771982f45 Author: Alan Garny Date: Thu Feb 27 17:45:07 2014 +0100 Fixed the issue with saving a blank new file (closes #290). commit 89866c3971ba54abeeb73f87f93ece41ef9c2737 Author: Alan Garny Date: Thu Feb 27 17:10:09 2014 +0100 Consider a blank new file as a(n empty) CellML file (closes #289). commit 0b79d2f2a7f8506e162d5666097d238808f59fdd Author: Alan Garny Date: Thu Feb 27 16:28:53 2014 +0100 Account for the fact that we might want to save a blank new file. commit a7862acd34da18129b41fea3384e96943bfd3774 Author: Alan Garny Date: Thu Feb 27 16:27:31 2014 +0100 Various minor improvements to our file manager. commit bcdd9eedb4a1e7369334382b1c77feeb6e07b389 Author: Alan Garny Date: Thu Feb 27 14:48:33 2014 +0100 Some work towards creating a blank new file (#278). commit 5f01e2fb1f35d3bde5247f95a14b18bc1027df56 Author: Alan Garny Date: Thu Feb 27 14:31:33 2014 +0100 Some work towards creating a blank new CellML 1.0/1.1 file (#279 and #280). commit 7c08a6c09ad1ebe4660e0f5accc03b5cf2309608 Author: Alan Garny Date: Thu Feb 27 14:23:13 2014 +0100 Some work towards creating a blank new file (#278). commit c2241cb90e6f80f88f5631b0f1bfae9dea8e7a5d Author: Alan Garny Date: Thu Feb 27 13:57:03 2014 +0100 Some minor cleaning up. commit c13df662368b6bde978a13c896ec8f51f0caa2fe Author: Alan Garny Date: Thu Feb 27 13:19:25 2014 +0100 Some minor cleaning up [ci skip]. commit eb1d7853fd48591e57b1197633b269b75770f382 Author: Alan Garny Date: Thu Feb 27 13:15:48 2014 +0100 Some minor cleaning up. commit caf33e41d65609c09f52763a3b77815204d9dced Author: Alan Garny Date: Thu Feb 27 11:14:43 2014 +0100 Done with adding support for EditingInterface and CellMLEditingInterface to the CellML Annotation view plugin (closes #288). commit 5058a61d73d910a496d8ef50b3c5fc6d4c819a8f Author: Alan Garny Date: Wed Feb 26 18:04:27 2014 +0100 Fixed the issue with duplicating a file while in CellML Annotation view (closes #287). commit 5a8f94cc7a59ed25d5b6e165d0537e1360d2f45a Author: Alan Garny Date: Wed Feb 26 17:17:40 2014 +0100 Done with ensuring that '\''disabled'\'' actions that have shortcuts don'\''t get get triggered when they shouldn'\''t be (closes #284). commit a0a91d557cea7bbeb63e087c7d718cfe5712f769 Author: Alan Garny Date: Wed Feb 26 16:13:31 2014 +0100 Some work towards ensuring that '\''disabled'\'' actions that have shortcuts don'\''t get get triggered when they shouldn'\''t be (#284). commit 0d0d8f09b923680b34d204c9d95d898ef78b0e20 Author: Alan Garny Date: Wed Feb 26 15:08:07 2014 +0100 Some minor cleaning up. commit 3ab110d1b8b9b8e30fe8df93536446db5265c2a9 Author: Alan Garny Date: Wed Feb 26 14:35:48 2014 +0100 Some minor cleaning up. commit e9cafc7601684ec67b8227dcaae1ee8ff00db876 Author: Alan Garny Date: Wed Feb 26 11:23:44 2014 +0100 Done with the loading/saving of QList settings on Linux (closes #286). commit 0eecb51ea694f32ef5abe05438a76b825d92ab2a Author: Alan Garny Date: Wed Feb 26 11:06:52 2014 +0100 Some work towards the loading/saving of QList settings on Linux (#286). commit c19149d868670e2c881723378e1f294e842e2ff4 Author: Alan Garny Date: Wed Feb 26 10:53:30 2014 +0100 Some work towards the loading/saving of QList settings on Linux (#286). commit 653bf65ea4bbd4e9819f4d5d43cabf8867c59f42 Author: Alan Garny Date: Tue Feb 25 16:15:55 2014 +0100 Some minor cleaning up [ci skip]. commit 259709ead20b33768e57e0f31d5e84dc66a84b48 Author: Alan Garny Date: Tue Feb 25 14:26:59 2014 +0100 Some minor cleaning up. commit 831bb5b20605eea55605789cfb621b26a70b7110 Author: Alan Garny Date: Tue Feb 25 13:25:19 2014 +0100 Fixed the issue with the GUI not being properly updated when closing all the files (closes #285). commit e7ae1944f16a8f860243efe329b4e26f28f02431 Author: Alan Garny Date: Tue Feb 25 11:43:53 2014 +0100 Some minor cleaning up [ci skip]. commit 4c5652935e208cda3efe460ecfa2903c9b726fea Author: Alan Garny Date: Mon Feb 24 19:06:29 2014 +0100 A new/duplicated is now always unlocked (until it gets actually saved) (closes #283). We also fixed/improved various things on the way… commit 8585712ea6ae29b1fda4ad9d7bdaf0dfb72834a0 Author: Alan Garny Date: Mon Feb 24 15:10:22 2014 +0100 Some slight improvements to showing some information about the editor in the status bar (#277). Functionally speaking, there is no difference, but in debug mode it prevents us from receiving some warnings on Windows. Indeed, it to call removeWidget() obviously means that the status bar loses track of the widget, which means that when we try to remove the same widget a second time, we get a warning about the widget not being found… commit 11a5cb9062169e5dcc035c3a8b551cd9c1a895d5 Author: Alan Garny Date: Mon Feb 24 14:36:23 2014 +0100 Oops, had forgotten about the Raw CellML and Pretty CellML views (#277).) commit 51dffa4eae82d4bb95a2896c806a1e5d3f960305 Author: Alan Garny Date: Mon Feb 24 14:29:50 2014 +0100 Done with showing some information about the editor in the status bar (closes #277). commit e2503c914e2d3c261f136cfb75e7f5f591c0d116 Author: Alan Garny Date: Mon Feb 24 10:30:18 2014 +0100 Some minor cleaning up [ci skip]. commit 496712b32c5ae516db3b82bac0a149b2b3738f37 Author: Alan Garny Date: Mon Feb 24 10:22:20 2014 +0100 Some work towards showing some information about the editor in the status bar (#277). commit 52d4cb80b89d17b30ff986f9fdec72270716198c Author: Alan Garny Date: Mon Feb 24 10:21:21 2014 +0100 Some minor cleaning up [ci skip]. commit afacf67f4482494a89e46170111c10df41b53015 Author: Alan Garny Date: Sun Feb 23 20:06:36 2014 +0100 Final work on using the ViewWidget class for all our view widgets (closes #281). This work was on the CellML Annotation view and resulted also in various improvements. commit 93354f0012d8aee667e4f83e0f7bd52df245e9b7 Author: Alan Garny Date: Sun Feb 23 20:03:03 2014 +0100 Some minor cleaning up [ci skip]. commit 9daffabf88813a0963111cb425d3bfeaef88de51 Author: Alan Garny Date: Sun Feb 23 15:00:33 2014 +0100 Some minor cleaning up [ci skip]. commit 977910a16f18a8216c9561ec7eceb2cb81741ff7 Author: Alan Garny Date: Sun Feb 23 14:23:51 2014 +0100 Some minor cleaning up [ci skip]. commit 3e296c3d8fb3589ba194ab4958d8abd06861fe0a Author: Alan Garny Date: Sun Feb 23 00:39:23 2014 +0100 Some minor cleaning up [ci skip]. commit b9902ab64d0ca17d9fb7c958b765e80c796fa289 Author: Alan Garny Date: Sun Feb 23 00:26:48 2014 +0100 Some minor cleaning up [ci skip]. commit 998b0da2354c48d54087b49ec840b47c2e8efad9 Author: Alan Garny Date: Sun Feb 23 00:03:22 2014 +0100 Some minor cleaning up [ci skip]. commit cdb1d60d0b03428476779d2909ef16e61e94e355 Author: Alan Garny Date: Sat Feb 22 23:19:01 2014 +0100 Some minor cleaning up [ci skip]. commit c70768f6f853a013a235b6bbc6c7b5bf5c5cc8ef Author: Alan Garny Date: Sat Feb 22 18:13:37 2014 +0100 Final work towards refactoring code that loads/saves QList settings (closes #282). commit cda7b387e5105b03c776c71f0791947f904baf64 Author: Alan Garny Date: Sat Feb 22 18:09:16 2014 +0100 Some work towards refactoring code that loads/saves QList settings (#282). commit 863cf86ba7eaea88c7cc9e6667bccd116e170799 Author: Alan Garny Date: Sat Feb 22 17:10:19 2014 +0100 Fixed a small issue with f21e5d21cca64301583e5bf337a8f0c0d6f5b486. commit 0ea6a7d2bbc2adde333c5137c1c1fd15d1fe070b Author: Alan Garny Date: Sat Feb 22 15:23:23 2014 +0100 Some minor cleaning up [ci skip]. commit 113551850e327788c74cbc12d9703fbda93d9067 Author: Alan Garny Date: Sat Feb 22 15:22:57 2014 +0100 Reverted what I thought was some safe cleaning up. (Shouldn'\''t have read some of my old comments!) commit f21e5d21cca64301583e5bf337a8f0c0d6f5b486 Author: Alan Garny Date: Sat Feb 22 14:46:08 2014 +0100 Some work towards refactoring code that loads/saves QList settings (#282). Also, some minor cleaning up. commit b7b9745130c82deb006a3a06452687c4cc1b5c66 Author: Alan Garny Date: Sat Feb 22 14:21:51 2014 +0100 Some work towards refactoring code that loads/saves QList settings (#282). Also, some minor cleaning up. commit 16d3a6339676e6747dca70ea10d6ce5de0bc8c6a Author: Alan Garny Date: Sat Feb 22 13:42:44 2014 +0100 Fixed a minor issue with resetting all the settings [ci skip]. commit c25f3008e0fd2764946bbbb2f5d202bfe83b23aa Author: Alan Garny Date: Sat Feb 22 13:33:53 2014 +0100 Fixed a small building issue on Linux. commit af1dfd3f17515b0677259cf340f639276beb1b43 Author: Alan Garny Date: Sat Feb 22 13:10:10 2014 +0100 Some work towards refactoring code that loads/saves QList settings (#282). Also, some minor cleaning up. commit fbde72c82ee74c1ae360cf2561faa42ac52e28d3 Author: Alan Garny Date: Sat Feb 22 12:46:21 2014 +0100 Some work towards refactoring code that loads/saves QList settings (#282). Also, some minor cleaning up. commit 723de88f5cb7984906717939a30e6ddc012a2686 Author: Alan Garny Date: Fri Feb 21 19:51:48 2014 +0100 Fixed a small building issue on Windows [ci skip]. commit 22503314903692b201dad9f0772f679700962c57 Author: Alan Garny Date: Fri Feb 21 18:36:06 2014 +0100 Some work towards using ViewWidget class for all our view widgets (#281). commit 1e82c1cb8134de08cf092b3aee47d51f7682c372 Author: Alan Garny Date: Fri Feb 21 18:29:17 2014 +0100 Some minor cleaning up [ci skip]. commit 2fa32a4c80b0af2d409267e4003146c3b093e073 Author: Alan Garny Date: Fri Feb 21 18:25:22 2014 +0100 Some work towards using ViewWidget class for all our view widgets (#281). commit 4154f087f99c29c38e63187f5ce0936dd108fbfb Author: Alan Garny Date: Fri Feb 21 18:19:45 2014 +0100 Some minor cleaning up [ci skip]. commit 8bb2eff9450ec034f28a2c02118e4c6b093750f2 Author: Alan Garny Date: Fri Feb 21 17:35:40 2014 +0100 Some minor cleaning up [ci skip]. commit 921287e4f417119639d6c1354813c8ce608b428e Author: Alan Garny Date: Fri Feb 21 17:33:41 2014 +0100 Fixed a silly issue in our central widget (following commit 1f3bedb29163d3fa15f15bb492732580ade444b3). commit 23b2e78c13277a9c5cb4c11e3bdc66df256a3624 Author: Alan Garny Date: Fri Feb 21 15:15:46 2014 +0100 Some minor cleaning up [ci skip]. commit 38bfeeed67be6482203a0c0b8bdd6587f65f2cb4 Author: Alan Garny Date: Fri Feb 21 15:04:20 2014 +0100 Some minor cleaning up [ci skip]. commit 9c3113e31bc0edcd2f0c519bd44981f11f496134 Author: Alan Garny Date: Fri Feb 21 14:55:07 2014 +0100 Some minor cleaning up [ci skip]. commit 701bf5c2cdd55a3eda77ac9a5448e6d3d1b77665 Author: Alan Garny Date: Fri Feb 21 11:06:12 2014 +0100 Some work towards using ViewWidget class for all our view widgets (#281). commit 97cf084c55943958c75aa7d574d5c38107fb9091 Author: Alan Garny Date: Fri Feb 21 10:30:43 2014 +0100 Some minor cleaning up [ci skip]. commit e3fe0dd904dacd3cada6930b4f3aa912c694c5c7 Author: Alan Garny Date: Fri Feb 21 10:05:36 2014 +0100 Some work towards using ViewWidget class for all our view widgets (#281). commit a429eb24dedbd84fe0fd8c9c1c3f8abed3cf9003 Author: Alan Garny Date: Thu Feb 20 18:17:50 2014 +0100 Some minor cleaning up [ci skip]. commit 731d079fda212bd421bfd08d97e42c6c66bc46c7 Author: Alan Garny Date: Thu Feb 20 17:26:16 2014 +0100 Some minor cleaning up. commit 555e25885f4104a63339884e3a04406176d21412 Author: Alan Garny Date: Thu Feb 20 17:23:34 2014 +0100 Some minor cleaning up [ci skip]. commit e7f478391a7e84654e949ec08b56afbadcaae36b Author: Alan Garny Date: Thu Feb 20 16:05:07 2014 +0100 Some minor cleaning up [ci skip]. commit 09937423ab7b367904a76786b7ced695829a21ac Author: Alan Garny Date: Thu Feb 20 15:54:05 2014 +0100 Some minor cleaning up [ci skip]. commit af5080dc9213b7c6a1e1e48a1715e7d62a332fdc Author: Alan Garny Date: Thu Feb 20 13:35:53 2014 +0100 Some work towards using ViewWidget class for all our view widgets (#281). commit 56e53abc487e09deb758bbfe86dfec63a69973be Author: Alan Garny Date: Wed Feb 19 16:20:49 2014 +0100 Some work towards showing an editor'\''s information in the status bar (#277). commit d4629244dd9177ab2a18af03340a567592dd0d84 Author: Alan Garny Date: Wed Feb 19 13:58:35 2014 +0100 Slight improvement to showing the caret line in QScintillaWidget (#276). commit 6597708e6adbf65c40a5758162ef5e9fdd77b01c Author: Alan Garny Date: Wed Feb 19 13:04:35 2014 +0100 Show the caret line in QScintillaWidget (closes #276). commit e9e5c0743d62526d97dd4e1791039532e75d0dae Author: Alan Garny Date: Wed Feb 19 11:44:38 2014 +0100 Some minor cleaning up [ci skip]. commit 8a5893b9b530de3e6511e80f00916c95aa7d7077 Author: Alan Garny Date: Wed Feb 19 10:47:02 2014 +0100 Some minor cleaning up [ci skip]. commit 0f539c34695a5a5cf804625258c8aec30b365a5a Author: Alan Garny Date: Wed Feb 19 10:04:29 2014 +0100 New snapshots. commit 0c2d21fdf8001e636192cae570edfd857c701022 Author: Alan Garny Date: Tue Feb 18 18:43:53 2014 +0100 Minor update to the user documentation [ci skip]. commit 176542dbe11143825819c479e2d540c787706472 Author: Alan Garny Date: Tue Feb 18 18:34:54 2014 +0100 Fixed the issue with OpenCOR crashing as a result of switching to the Raw view from the CellML Annotation view (closes #274). Also slight improvement to our CoreEditing plugin. commit 1f3bedb29163d3fa15f15bb492732580ade444b3 Author: Alan Garny Date: Tue Feb 18 17:29:29 2014 +0100 Done with a modified file only preventing switching views for the current file (closes #263). commit d3adf263e9754cccfe7c06b312dcf1be4eb9532b Author: Alan Garny Date: Tue Feb 18 16:40:21 2014 +0100 Some minor cleaning up [ci skip]. commit e082eab9cefbb505662de02220f463dd0c1039a2 Author: Alan Garny Date: Tue Feb 18 16:01:42 2014 +0100 Minor improvement to issue #269. commit 139e331f83d834c060eabbbf246c267e96eb42f2 Author: Alan Garny Date: Tue Feb 18 15:29:21 2014 +0100 Done with remembering the mode and view used of a particular file (closes #269). commit d5e5f642e6c673118e9882e078f3511214260cfb Author: Alan Garny Date: Tue Feb 18 11:45:30 2014 +0100 Some minor cleaning up [ci skip]. commit 50202ea38933939af94f68572fdb383be0448ee4 Author: Alan Garny Date: Tue Feb 18 10:02:58 2014 +0100 Some minor cleaning up [ci skip]. commit 01afb5aea42625c352504c84b913289b4e3ad913 Author: Alan Garny Date: Mon Feb 17 18:42:06 2014 +0100 Some work on allowing each file to have its '\''own'\'' mode and view (#269). commit d4e9ec48a71ef5059106bdc430ed517d75040a5d Author: Alan Garny Date: Mon Feb 17 18:37:40 2014 +0100 Support file renaming in the Pretty CellML view (closes #273). commit 5d6e07bf16fc8d2f2873f640d0f372cff34d1277 Author: Alan Garny Date: Mon Feb 17 18:37:12 2014 +0100 Support file renaming in the Raw CellML view (closes #272). commit da3890fb09ac1d09bea75ffd09ec1f8e35ffa8ac Author: Alan Garny Date: Mon Feb 17 18:33:25 2014 +0100 Some minor cleaning up. commit 5918b8849941555f4f291103149bb4f160cf137c Author: Alan Garny Date: Mon Feb 17 18:11:32 2014 +0100 Fixed the issue with renaming a file without having used the CellML Annotation view (closes #271). commit 975d72510e0f201e896150d20d67236e23c37ad5 Author: Alan Garny Date: Mon Feb 17 18:01:13 2014 +0100 Fixed the issue with renaming a file without having used the Raw view (closes #270). commit abbda6a719d957fd2bc89389c09e65d7bb886753 Author: Alan Garny Date: Mon Feb 17 17:03:08 2014 +0100 Some work on allowing each file to have its '\''own'\'' mode and view (#269). commit 1b7c8766bd8327be319bd90b04aebf2b5cb77646 Author: Alan Garny Date: Mon Feb 17 17:02:21 2014 +0100 Some minor cleaning up [ci skip]. commit 738172c7c7fcac3ad846bfdf904754ef64c71a48 Author: Alan Garny Date: Mon Feb 17 16:16:18 2014 +0100 Some minor cleaning up [ci skip]. commit 0134a1d6e7844655963f6c31540fc3abf6acc7de Author: Alan Garny Date: Mon Feb 17 16:06:14 2014 +0100 Some work on allowing each file to have its '\''own'\'' mode and view (#269). commit f8d0a72c6ea1a9822edaf1ed235df37d69584c73 Author: Alan Garny Date: Mon Feb 17 15:24:33 2014 +0100 Some minor cleaning up [ci skip]. commit 737a6a08b7af8b263573f2407ece92147a5a5999 Author: Alan Garny Date: Mon Feb 17 13:42:33 2014 +0100 Some minor cleaning up. commit dcda7683355a0b2c82ac50875a96e09b8fb72acf Author: Alan Garny Date: Mon Feb 17 13:28:01 2014 +0100 Some minor cleaning up. commit 0858d000d3911fbda02ea201ddf4a674554e5a53 Author: Alan Garny Date: Mon Feb 17 11:56:41 2014 +0100 '\''Fixed'\'' an issue with the last commit [ci skip]. commit b32b4f8ca8ab346224b43a354fb0677f1c23be62 Author: Alan Garny Date: Mon Feb 17 11:49:30 2014 +0100 Some minor cleaning up [ci skip]. commit 52fc36570949e5924a8c9dbcc0a7c0b0644da6a3 Author: Alan Garny Date: Mon Feb 17 10:52:34 2014 +0100 Minor update to our developer documentation [ci skip]. commit c7dce34577042fd866138983243bd465eeff350c Author: Alan Garny Date: Mon Feb 17 10:25:19 2014 +0100 Fixed the issue with the saving of a CellML file not resulting in its reloading in the SingleCell view (closes #268). commit f7aa43d0d0f73921a351804cc998313a060d53d5 Author: Alan Garny Date: Mon Feb 17 09:40:03 2014 +0100 Some minor cleaning up. commit 7d0e9294f5a13d043a764a731be292a36466b472 Author: Alan Garny Date: Sun Feb 16 17:00:52 2014 +0100 Fixed a problem with closing (and saving) a duplicated file (closes #267). commit fabd82261ac20eb70597423365d1f6c86ed0aeaf Author: Alan Garny Date: Fri Feb 14 16:57:28 2014 +0100 Fixed the issue with the saving of a duplicated file suggesting the temporary file name (closes #262). commit 67e721e23015f5ea2aa630eecd88858aec393914 Author: Alan Garny Date: Fri Feb 14 16:55:53 2014 +0100 Make sure that only managed and non-new files can be added to our list of recent files [ci skip]. commit 365fa304413598ec22cb2b8c4a15ba0f6e3a999c Author: Alan Garny Date: Fri Feb 14 16:54:45 2014 +0100 Fixed a small issue with the tab tool tip of a new file [ci skip]. commit 14bb3e6c8162c7130afae46994f5d8391a9bec93 Author: Alan Garny Date: Fri Feb 14 16:47:32 2014 +0100 Oops, didn'\''t commit enough last time! commit 805099508c4d5200d356256ea4b893f20622ec1f Author: Alan Garny Date: Fri Feb 14 16:38:32 2014 +0100 Delete temporary files that get created for duplicated/new files (closes #266). commit c8d9d3d7874c8775ba553e30d7e1023af184f87f Author: Alan Garny Date: Fri Feb 14 16:23:44 2014 +0100 Improved the resetting of a file object in our file manager [ci skip]. commit 40940e31ec16f2a0ebeff19a8ad385260111ca1d Author: Alan Garny Date: Fri Feb 14 14:44:29 2014 +0100 Fixed the issue with a duplicated file being closed but not saved, and showing up next time round (closes #264). commit e4585267bfcc6735d5a470410fceb2b3c3e5d097 Author: Alan Garny Date: Fri Feb 14 14:29:23 2014 +0100 Some minor cleaning up [ci skip]. commit ed6085c58860d696c6cca05ce6c5bb29cb804cb0 Author: Alan Garny Date: Fri Feb 14 14:16:58 2014 +0100 Fixed the issue with a duplicated file being closed but not saved, and being put in the list of recent files (closes #265). commit 6cbd7520684c135bfa5adf6c1cdeeb6cbe7635a4 Author: Alan Garny Date: Fri Feb 14 11:47:04 2014 +0100 Can now save a file using the Raw CellML view (closes #260). commit db253f500ad3d9a12c806d8f6b62aaa5de30f4c0 Author: Alan Garny Date: Fri Feb 14 11:46:23 2014 +0100 Fixed a small issue with resetting the undo history of our QScintilla widget [ci skipped]. commit 580eb9d5bda0b7f1b83260c704fba6754b87262e Author: Alan Garny Date: Thu Feb 13 17:57:11 2014 +0100 Improved the way we handle the saving of a file. commit 2adb5491f5de85d708293e65c5120ae9fb71ac01 Author: Alan Garny Date: Thu Feb 13 13:43:36 2014 +0100 Can now save a file using the Raw view (closes #259). commit c4bac10ac1b490a34c346285837c771415b90e51 Author: Alan Garny Date: Wed Feb 12 17:50:50 2014 +0100 Working towards being able to save a file that has been edited using one of our text-based views. commit 026636ea3978f4020de9b843e22043c7a5bbfd07 Author: Alan Garny Date: Wed Feb 12 17:41:44 2014 +0100 Some minor cleaning up. commit 233f50c0959d9f4cda996a33a32534e3f48151b7 Author: Alan Garny Date: Wed Feb 12 17:29:19 2014 +0100 Some minor cleaning up. commit 07abea80d958621106abbfed7809e8afb51f6bd6 Author: Alan Garny Date: Wed Feb 12 17:12:46 2014 +0100 Some minor cleaning up. commit c5dcd9ebe65cf28aafdec88e88bd98da27b45c30 Author: Alan Garny Date: Wed Feb 12 16:54:34 2014 +0100 Some minor cleaning up. commit 1067e691e0982c0595fc8c2409cc19df420a89de Author: Alan Garny Date: Wed Feb 12 16:19:41 2014 +0100 Some minor cleaning up. commit 5cb14d25bda98d48705df4a6c818ee7e8a468508 Author: Alan Garny Date: Wed Feb 12 16:08:06 2014 +0100 Some minor cleaning up [ci skip]. commit 4237b82a1a1fe895566ccb725316a389faf7bd49 Author: Alan Garny Date: Wed Feb 12 11:53:04 2014 +0100 Some minor cleaning up. commit e3bc727f1bed2ce9d7c1472c45ec478d8a2f515f Author: Alan Garny Date: Wed Feb 12 11:50:09 2014 +0100 Fixed our CentralWidget::saveFile() method now that we can roughly duplicate files. commit 0e9d6cd123e8853fa31e91a3a7456b677474d0de Author: Alan Garny Date: Wed Feb 12 11:03:29 2014 +0100 Fixed our CentralWidget::saveFile() method now that we can roughly duplicate files. commit 6e27feccd1bea05948644f86994d63786cd4f15b Author: Alan Garny Date: Tue Feb 11 17:23:25 2014 +0100 Fixed a small issue with regards to updating the modified state of a file that has been modified through our QScintillaWidget. commit 48589a99715cbdcef3d0967059398569bd3541ff Author: Alan Garny Date: Tue Feb 11 16:57:26 2014 +0100 Update the modified state of a file that has been modified through our QScintillaWidget. commit 1825b781642bd5ed8b033acc960e00be3a50397d Author: Alan Garny Date: Tue Feb 11 16:55:26 2014 +0100 Some minor cleaning up [ci skip]. commit 02cb345fa4b3c2c94cefc89ce741703129c05d13 Author: Alan Garny Date: Tue Feb 11 13:13:24 2014 +0100 Some work on the duplication of a file (#255). commit eb5ef6aa5074bac2c2e5376a6ee34265dc62e5f4 Author: Alan Garny Date: Tue Feb 11 13:05:45 2014 +0100 Some work on the duplication of a file (#255). commit a0fca5fa12f214462e14922df7a3327bce66c3e0 Author: Alan Garny Date: Mon Feb 10 09:29:47 2014 +0100 Updated our developer documentation, as well as our copy of QScintilla. commit fc9b2c096f08fc6dc6fa99d96274e7de90ce47c8 Author: Alan Garny Date: Thu Feb 6 10:49:47 2014 +0100 Slight updates to the developer documentation following the release of Qt 5.2.1 and Qt Creator 3.0.1 [ci skip]. commit db75f306c007a75d63a8e7fda5d78210d5a96fd3 Author: Alan Garny Date: Thu Feb 6 10:10:05 2014 +0100 Slight updates to the developer documentation following the release of Qt 5.2.1 and Qt Creator 3.0.1 [ci skip]. commit 49d3fa291eb639ff564f9fe3c1f1b5d46cfd1a4d Author: Alan Garny Date: Fri Jan 31 17:44:15 2014 +0100 Some work on the duplication of a file (#255). commit 0e453b92bb7793e48c13865478d483a1e0084bc1 Author: Alan Garny Date: Fri Jan 31 17:06:16 2014 +0100 Some minor cleaning up. commit 2c6d7e5226a591b01b48a477026f8f1ab1004364 Author: Alan Garny Date: Fri Jan 31 15:03:23 2014 +0100 Some minor cleaning up [ci skip]. commit 5b772d182e3868814cd89146eefdf03c950b5733 Author: Alan Garny Date: Fri Jan 31 12:03:59 2014 +0100 Slight update to our user documentation [ci skip]. commit 563d34e30a57b85f4ba14e52339e01dcbbef4a16 Author: Alan Garny Date: Fri Jan 31 11:42:13 2014 +0100 Some work on the duplication of a file (#255). commit 4978249df5b35e40d28f01dd655ff07b5af125b0 Author: Alan Garny Date: Thu Jan 30 15:33:51 2014 +0100 Some minor cleaning up [ci skip]. commit fc90c15d45443f3cbf5e9ef25a64a6077f951f37 Author: Alan Garny Date: Wed Jan 29 18:31:36 2014 +0100 Some minor cleaning up. commit b9704ed33d2e8f4a3fb4eb7773fd43150bdb0fb5 Author: Alan Garny Date: Wed Jan 29 14:59:58 2014 +0100 Show a lock in the file tab when a file is locked (closes #258). commit fed33708014c99a27a8e18c965a694d7779900f4 Author: Alan Garny Date: Tue Jan 28 19:47:33 2014 +0100 CellML Annotation view: fixed a small issue with the information message about the direct term not being properly updated when locking/unlocking a file. commit beaf7fb9dd5f87985a4dee09056efda3655d1355 Author: Alan Garny Date: Tue Jan 28 19:00:16 2014 +0100 A lot (too many!) changes to improve our handling of file permissions changes (#257). commit c895d8d9b54d6dda1303606e8df928a1c909149c Author: Alan Garny Date: Tue Jan 28 13:28:15 2014 +0100 Some minor cleaning up [ci skip]. commit b415cfee7d1dccf21762787d99f20b3a6afab75e Author: Alan Garny Date: Mon Jan 27 19:40:17 2014 +0100 Slight update to QtSingleApplication. commit 09e470a1fa679924a4256fc1aef7e700818b53d7 Author: Alan Garny Date: Mon Jan 27 19:23:19 2014 +0100 Some minor improvements to locking/unlocking a file. commit 0dbaae06c410970fea59e22b6bc15aeefd928e64 Author: Alan Garny Date: Mon Jan 27 19:00:28 2014 +0100 Some minor improvement to our CellML Annotation view (#257). commit 0af6a107b940e22f41e8184b78b79b3ea046c251 Author: Alan Garny Date: Mon Jan 27 18:08:01 2014 +0100 Some minor cleaning up (#257). commit 8f782b0eafaf0bbce8974e9cdf9c85eeab200410 Author: Alan Garny Date: Mon Jan 27 17:58:42 2014 +0100 Make sure that the CellML annotation view only allows editing of writable files (closes #257). commit 654a320c56a5bf7502134b6ea066290ff6324dc1 Author: Alan Garny Date: Mon Jan 27 16:28:32 2014 +0100 Some minor cleaning up. commit 2d1f30a66b3d48d725da93975625aa82663b8be8 Author: Alan Garny Date: Mon Jan 27 10:35:20 2014 +0100 Updated jQuery from version 1.10.2 to version 1.11.0 [ci skip]. commit 4d629b650ad729c0cefe4efbf0146c62bb9faca6 Author: Alan Garny Date: Sat Jan 25 23:49:15 2014 +0100 Upgraded QScintilla to the latest snapshot. commit ab4d9c7490b73eeefd81cc4431d26d7bfa797057 Author: Alan Garny Date: Wed Jan 22 15:00:10 2014 +0300 Minor update to our documentation readme file (so that we can trigger a build!). commit 709032b7966ff392dd0241f45e7ef7bfcf91f5e3 Author: Alan Garny Date: Wed Jan 22 10:59:49 2014 +0300 Customised a message from the metadata editing view, based on whether a file is locked. commit 49bd8cd61db631a32afbcb6b6208cdba6d3ca1a8 Author: Alan Garny Date: Wed Jan 22 10:41:54 2014 +0300 Make it possible for plugins (that support the GUI interface) to be told about a file having had its locked status changed or having been modified. commit e77ecf016603dd530b70002ed3402dabee64929c Author: Alan Garny Date: Mon Jan 20 16:56:37 2014 +0300 Some minor cleaning up. commit 2d46f544413df6e010f62ac65a54a0d75e6418de Author: Alan Garny Date: Mon Jan 20 10:37:45 2014 +0300 Updated our copy of QScintilla to its latest snapshot. commit b927e074878dcab2a160b0ad775ecf84bf6c3652 Author: Alan Garny Date: Sun Jan 19 11:59:17 2014 +0300 Some work on our file duplication feature (#255). commit 3d7226359b20c16df8e4ed23a103d839ca4b0e95 Author: Alan Garny Date: Sun Jan 19 11:55:15 2014 +0300 Some improvements to our File class. commit 482a6a4c9b767f4646ee208db145c8663c7e3926 Author: Alan Garny Date: Sun Jan 19 11:37:33 2014 +0300 Some minor cleaning up [ci skip]. commit 339ae9399e1952b8e3ffb74832d864bb4545b701 Author: Alan Garny Date: Sat Jan 18 20:52:12 2014 +0300 Minor update to the developer documentation [ci skip]. commit 94f72090debb6dfb5c0a2749c577ea4e2e129aba Author: Alan Garny Date: Tue Jan 14 20:03:22 2014 +0100 Slight improvement to our CMake code for retrieving a binary file. commit 047bca07a7eaae1715f112091048a402760e308c Author: Alan Garny Date: Tue Jan 14 19:59:22 2014 +0100 Slight improvement to our CMake code for retrieving a binary file. commit f7ec491142c6a04f5dfc3246c843f37b9dfa6f6c Author: Alan Garny Date: Tue Jan 14 19:53:28 2014 +0100 Some minor cleaning up of our common CMake file. commit 67cbceea8aa3729c95c2ee210d09ef170cfd9bed Author: Alan Garny Date: Tue Jan 14 19:01:17 2014 +0100 Slight update to our .gitignore file [ci skip]. commit 702a26fe2f8b5d2a5ec5bb7b57d9461e415134b1 Author: Alan Garny Date: Tue Jan 14 18:44:43 2014 +0100 Some more work on our CoreEditing plugin. commit 9f94ef208503149888d78a5c0cb57ccf57100cf1 Author: Alan Garny Date: Tue Jan 14 15:42:32 2014 +0100 Minor improvement to the un/locking of a file. commit c91dd4f6d98919b47c7001c2d824c0a6b227095b Author: Alan Garny Date: Tue Jan 14 15:42:00 2014 +0100 Enable/disable the Duplicate menu item depending on whether the current file is modified. commit 1c8a066dc33f19f8626985a22612174cbf3aafd3 Author: Alan Garny Date: Tue Jan 14 14:11:45 2014 +0100 Enable/disable the Locked menu item depending on whether the current file is modified. commit 0ce0a84c069083799d3cc7e56182a405e4fcb5d2 Author: Alan Garny Date: Tue Jan 14 11:07:02 2014 +0100 Fixed a couple of issues with locked files and editors. commit bee022e49003e27731b27ee6c2ceebe30b070341 Author: Alan Garny Date: Mon Jan 13 19:51:13 2014 +0100 Make editor-based views reddish for locked files. commit 7ca57cc1f229c3b1dcab4d1e34814ca77d1217f8 Author: Alan Garny Date: Mon Jan 13 19:38:05 2014 +0100 Some minor cleaning up. commit 194eac64e137231d64befdb153a72dbd1658e3c7 Author: Alan Garny Date: Mon Jan 13 19:19:00 2014 +0100 Some minor improvements on our file manager class. commit c7f7ae67ff718f7982e36bd1a7665b5afa0b9627 Author: Alan Garny Date: Mon Jan 13 18:47:21 2014 +0100 Bypass shortcuts used by QsciScintilla. commit b008bcabb8353afc83a4f99baabeb4ef5120e6d4 Author: Alan Garny Date: Mon Jan 13 18:22:20 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). commit c5f3a5c610a8e453208c7fe5df3a733a439e9fa1 Author: Alan Garny Date: Mon Jan 13 17:30:15 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). commit 3667155adaffef236699122f6e5a0c0cd43d4f83 Author: Alan Garny Date: Mon Jan 13 16:01:02 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). commit 59121c80e2e2044ac554498c4dcaa40a1466ae2b Author: Alan Garny Date: Mon Jan 13 15:18:21 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). commit 16d9708968a3695a5955d353c13ee7328368fc19 Author: Alan Garny Date: Mon Jan 13 15:00:28 2014 +0100 Some minor cleaning up [ci skip]. commit 0435541b095166b2e517ebdbb8d230bd00ba1f4c Author: Alan Garny Date: Mon Jan 13 14:57:53 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). Now works on all our supported platforms (i.e. Windows, Linux and OS X). commit 32253ba1d3424eee8bed9d4f95cdfddf23d9df7a Author: Alan Garny Date: Mon Jan 13 11:38:55 2014 +0100 Some minor cleaning up [ci skip]. commit 5d83424a36d258e8de83cbcaf417735b079e08b8 Author: Alan Garny Date: Mon Jan 13 11:26:03 2014 +0100 Some work on allowing a file to be locked/unlocked (#256). commit 2828051a35e5e6503404e794aa974f490321d60b Author: Alan Garny Date: Fri Jan 10 16:00:21 2014 +0100 Generated new LLVM (3.4) binaries. commit 4d8aee880123be8ecc2e7b0a06eec0c8988a03d4 Author: Alan Garny Date: Fri Jan 10 15:22:53 2014 +0100 Some minor cleaning up of our common CMake file for LLVM [ci skip]. commit 5042969294c28efa1db3433466b88ae5d7fccc97 Author: Alan Garny Date: Fri Jan 10 14:01:58 2014 +0100 Some minor cleaning up of our common CMake file for LLVM [ci skip]. commit 54d247dbfcf3bfe9b84581b9e1115e17dabc4878 Author: Alan Garny Date: Fri Jan 10 13:13:04 2014 +0100 Some minor cleaning up of our common CMake file for LLVM [ci skip]. commit f6887622ee5e1b32065772859a7dd095e5cca496 Author: Alan Garny Date: Fri Jan 10 11:10:21 2014 +0100 Some minor cleaning up of our common CMake file for LLVM [ci skip]. commit c75421d293bf8a1bcd219f470f6686b61f2ea08c Author: Alan Garny Date: Fri Jan 10 11:04:48 2014 +0100 Slight improvement for Linux with regards to our splash screen [ci skip]. commit 19d01caef3cb9c0ad790b16eb968db5f052e4a08 Author: Alan Garny Date: Thu Jan 9 21:31:07 2014 +0100 Some work on LLVM on Windows (it now works fine on Windows) [ci skip]. commit 68159be958d158df506dca98dd4d8dc7de59d8d4 Author: Alan Garny Date: Thu Jan 9 18:57:48 2014 +0100 Some work on LLVM on Windows [ci skip]. commit a0f31c90f6647c2dd1fa0dce50610e65e1fdb148 Author: Alan Garny Date: Thu Jan 9 18:38:25 2014 +0100 Some work on LLVM on Windows [ci skip]. commit 9eedae481b858a9a81d8122dcfb4ce3c985b9273 Author: Alan Garny Date: Thu Jan 9 18:26:36 2014 +0100 Some work on LLVM on Windows [ci skip]. commit 0be104286e645f5fefb81dcf702e110218a45054 Author: Alan Garny Date: Thu Jan 9 18:21:57 2014 +0100 Some work on LLVM on Windows [ci skip]. commit fe3829331e08a58a1551a10752acce1cad3f7636 Author: Alan Garny Date: Thu Jan 9 17:38:04 2014 +0100 Some work on LLVM on Windows [ci skip]. commit 85a7fc30cf19be10ea34c7832bdfb66c0474c4f3 Author: Alan Garny Date: Thu Jan 9 17:14:56 2014 +0100 Had forgotten to unignore some LLVM files. Also some work on LLVM on Windows [ci skip]. commit 52e28b71ca22b20ea8f66d76110158f5c364c452 Author: Alan Garny Date: Thu Jan 9 16:33:04 2014 +0100 Slight update to various documentations [ci skip]. commit 2659cc6070681893c75710436286bb6d44674b22 Author: Alan Garny Date: Thu Jan 9 16:09:40 2014 +0100 Some minor cleaning up of the LLVM files. commit 4c0139d87f7b72f9f3b38d78308d980f0a0131e1 Author: Alan Garny Date: Thu Jan 9 15:55:40 2014 +0100 Fixed an issue with our Plugins window. commit 5955db401f9e6df61fd7721f888fa50122b08c1d Author: Alan Garny Date: Thu Jan 9 14:19:09 2014 +0100 Reimplemented the need to specify whether a plugin is selectable. Indeed, if only one plugin was to be available (e.g. the Core plugin), then it used to be selectable no matter what while only a truly selectable plugin (e.g. the RawView plugin) should be made selectable. It’s because we used to determine the selectable state of a plugin based on whether it was needed by another plugin. commit d35a5364143318a8e29e68493fa2d3da6b935292 Author: Alan Garny Date: Thu Jan 9 09:48:34 2014 +0100 Upgraded QScintilla to the latest changeset. commit 470bcb25b4f4b49695eb6bb4d9f6cc340fa822a5 Author: Alan Garny Date: Thu Jan 9 09:40:36 2014 +0100 Some minor cleaning up. commit d66b05c7dd8c38a06b2d19fffb31a86b40c998fe Author: Alan Garny Date: Wed Jan 8 19:43:39 2014 +0100 Upgraded LLVM to version 3.4 [ci skip]. It all works fine on OS X, so now we need to check things on Linux and Windows (the latter will require introducing the import/export statements). commit acb417bc41f72fd814337ae6aee2ae9d951ebd8e Author: Alan Garny Date: Wed Jan 8 17:52:14 2014 +0100 Removed the EXTERNAL_LIBRARIES option when building a plugin. commit 9a27bfd3a005499cf008c44d0f28ebce69b864b2 Author: Alan Garny Date: Wed Jan 8 11:55:17 2014 +0100 Removed the EXTERNAL_LIBRARIES option when building a plugin. It was introduced to support the use of ZLib in LLVM on OS X, but we should never have needed this in the first place. commit ce789a3402f6beaf57cdc09d86c7f38ade5adbc1 Author: Alan Garny Date: Wed Jan 8 10:47:56 2014 +0100 Some minor cleaning up (so that we can build the OpenCOR executable without any plugin if we need/want). commit 76c30ecc600a94eab1e317ff27d525d77773e2c7 Author: Alan Garny Date: Tue Jan 7 15:51:47 2014 +0100 Some minor cleaning up [ci skip]. commit c25775c36a41878f0d1f43dad7a54bd064bbca8e Author: Alan Garny Date: Tue Jan 7 13:53:01 2014 +0100 Slight update to the LLVM readme file [ci skip]. commit 8a16f075d7d6f26f18e85ea72fd245e0d9f3aad6 Author: Alan Garny Date: Tue Jan 7 09:58:32 2014 +0100 Upgraded QScintilla to the latest changeset. commit 9b67f225e04958e225180c8783223eacf8b1f3a0 Author: Alan Garny Date: Mon Jan 6 17:44:01 2014 +0100 Some minor cleaning up. commit bf69659b8d28816547ba45eef507a9aba01506f4 Author: Alan Garny Date: Sun Jan 5 18:21:15 2014 +0100 Some initial work on allowing to toggle the locked state of a file (#256). commit 968aa5e968f35de7b8887e2b6ac8c558cbf15d27 Author: Alan Garny Date: Sun Jan 5 18:20:23 2014 +0100 Some initial work on allowing the duplication of a file (#255). commit 35940a2817ee4c5a1a3e37aab63e26899080a98a Author: Alan Garny Date: Sun Jan 5 16:20:54 2014 +0100 Added support for some more editing features (select all) in our different text-based editing views. commit 34eb3399e7e96703b237116e726752a14b90c4dc Author: Alan Garny Date: Sun Jan 5 16:09:28 2014 +0100 Temporarily disable the find/replace features in our core editing plugin. commit fdb5a623d01d5a38cd8142acbf1d8419ac6bbcb8 Author: Alan Garny Date: Sun Jan 5 11:34:25 2014 +0100 Upgraded QScintilla to the latest changeset. commit e06cff53e833a5125e97a0f820a26325a53e003f Author: Alan Garny Date: Sat Jan 4 11:26:22 2014 +0100 Slight update to our developer documentation [ci skip]. commit 82249ec0acde5a0028ec766947f02504cfd8aedb Author: Alan Garny Date: Sat Jan 4 11:26:02 2014 +0100 Upgraded QScintilla to the latest change set. commit 3f1dc09f80aa57315d5da575984ecca360a7070f Author: Alan Garny Date: Fri Jan 3 11:44:36 2014 +0100 Upgraded QScintilla to the latest snapshot, which '\''properly'\'' fixes the issue with Retina displays (#248). commit 70fd54095e77ea70a4eea8f8d41932f27caa43e2 Author: Alan Garny Date: Thu Jan 2 11:45:03 2014 +0100 Minor update to QScintilla. commit 46e09bf2a2265f11fcf843f3259a8e016ef92f13 Author: Alan Garny Date: Sun Dec 29 13:51:41 2013 +0100 Added support for some more editing features (undo and redo) in our different text-based editing views. commit 7bdde0752f6083fea5d3a05f157f0b46a2298e7d Author: Alan Garny Date: Sat Dec 28 20:00:28 2013 +0100 Improved the way we set our editors'\'' context menu. commit 0542ab0aa0fa2519c98d1d3ece2ad1680f62f8bf Author: Alan Garny Date: Sat Dec 28 17:41:04 2013 +0100 Have our editors show a more accurate context menu. commit 3e6ed5d4a76bf195b0ccad99c9dad463c7aba244 Author: Alan Garny Date: Fri Dec 27 17:31:52 2013 +0100 Disable the edit menu items if no file is opened. commit b44b14670ca4db71a45fab803839e357d2bc2b38 Author: Alan Garny Date: Thu Dec 26 20:47:56 2013 +0100 Added support for some editing features (cut, copy, paste and delete) in our different text-based editing views. commit de332f7af35f2c4c3300921b9c596aed577d9454 Author: Alan Garny Date: Mon Dec 23 09:50:53 2013 +0100 Added a "New file" action to our CoreEditing plugin. commit 1219d7d5bf70339f3494cc32d17bcbb72a92febe Author: Alan Garny Date: Mon Dec 23 09:35:19 2013 +0100 Updated QScintilla to the snapshot version of 21 December 2013. commit 7f03269e0c585dc29b6eb6226599d220aed4d27e Author: Alan Garny Date: Sun Dec 22 17:45:17 2013 +0100 Fixed a small issue with separators being counted in when they shouldn'\''t have been. commit 91f6a41eb57b2d429c4230d4fdcf671d14d8509c Author: Alan Garny Date: Sun Dec 22 17:25:49 2013 +0100 Fixed an issue with building on Windows. commit 90df29439535c61e6bc94929587ba1048f4aa25a Author: Alan Garny Date: Sun Dec 22 16:46:16 2013 +0100 Show/enable or hide/disable actions within plugins themselves rather than within our main window code. commit 3a2ac2121183b7988cc7479eee059317144af17d Author: Alan Garny Date: Sun Dec 22 11:50:40 2013 +0100 Added a new (CellML editing) interface. commit f9ebb6f8958a80dae8299306f7f96c2e021e45f8 Author: Alan Garny Date: Sat Dec 21 23:31:35 2013 +0100 Some minor cleaning up. commit e79f97aae61c6c16dc0508e4cf782e1a6737b9d4 Author: Alan Garny Date: Sat Dec 21 23:07:50 2013 +0100 Some minor cleaning up. commit d9249445e3770e77dca42513d7c3c85beba344b9 Author: Alan Garny Date: Sat Dec 21 22:07:06 2013 +0100 Created a new (editing) interface. Also, some minor cleaning up of our main CMake file. commit c66f1b5c8a281f9f25e80d2a683fa2c59fc437b1 Author: Alan Garny Date: Sat Dec 21 20:58:20 2013 +0100 Some minor cleaning up [ci skip]. commit 4d984fefe176a445a8936f196bee9e21d40f24aa Author: Alan Garny Date: Sat Dec 21 18:48:44 2013 +0100 Some minor cleaning up of our CellML Annotation view. commit bbb6ed7250fd93b1c4a26731f6b2209ab655b438 Author: Alan Garny Date: Sat Dec 21 18:26:22 2013 +0100 Minor update to our developer documentation [ci skip]. commit 88e68fab56f066d849b8fce1ef7f5e5c08a54c4a Author: Alan Garny Date: Wed Dec 18 14:13:45 2013 +0100 Slight improvements to our splash screen. commit 5790fd4199dd440d300122673e12771db35c27e9 Author: Alan Garny Date: Wed Dec 18 11:01:36 2013 +0100 Slight improvements to our splash screen. commit b392464c32089fe920e8863cd3363a944d029a90 Author: Alan Garny Date: Wed Dec 18 10:22:16 2013 +0100 Some minor cleaning up. commit 88c367343d08d2675de56d724759c9d5a5897616 Author: Alan Garny Date: Tue Dec 17 20:46:26 2013 +0100 Some minor cleaning up [ci skip]. commit aead7eca6fc21c8922a9cff6bbacde8d2d781c11 Author: Alan Garny Date: Tue Dec 17 20:37:12 2013 +0100 Some minor cleaning up. commit 9dfdd1fd4866a0ee113f7f2efdc499543cd0ad0e Author: Alan Garny Date: Tue Dec 17 20:31:38 2013 +0100 Various improvements to our splash screen. commit d1ac96de7664249113578b193e2639e201c3cc9c Author: Alan Garny Date: Tue Dec 17 20:23:01 2013 +0100 Moved some global functions in a better place (from CommonWidget to guiutils). commit 39f6784a63c896999f07b80ae296fabd18da12a0 Author: Alan Garny Date: Tue Dec 17 20:04:19 2013 +0100 Some minor cleaning up of code. commit c3e2239ce66ca5b730f114006ec28a4547365a47 Author: Alan Garny Date: Tue Dec 17 17:58:30 2013 +0100 Added a splash screen. commit cab8e5fcadf7eaf91f86f257ab22b78eea1f5428 Author: Alan Garny Date: Tue Dec 17 10:56:21 2013 +0100 CellML tools are now available no matter which view is being used (closes #253). commit cbe188fdf2395193a64361178b22ac2155281a57 Author: Alan Garny Date: Mon Dec 16 18:32:54 2013 +0100 Minor updates to our documentation [ci skip]. commit e363b19b354296064ec6f662db4a55cda4727cac Author: Alan Garny Date: Mon Dec 16 18:25:47 2013 +0100 Slight updates to the user documentation [ci skip]. commit 105b0cbafb1ccd2d2ebb50d7137ac52bdd567f71 Author: Alan Garny Date: Mon Dec 16 18:11:50 2013 +0100 Keep track, from one session to another, of the zoom level used by our various QScintilla-based views. commit 68e591d5ac16474dc86a9d8416e9df74ed6451b5 Author: Alan Garny Date: Mon Dec 16 17:56:03 2013 +0100 Some minor cleaning up [ci skip]. commit 4e642958b69780ffde38351ab9439cc6afbb32a1 Author: Alan Garny Date: Mon Dec 16 17:30:13 2013 +0100 Our various QScintilla-based views (i.e. Raw, RawCellML and PrettyCellML) use the same zoom level for all the files they edit. commit de1bbd45a9be6119cc6b2c8e5076471be89f4595 Author: Alan Garny Date: Mon Dec 16 10:33:15 2013 +0100 Allow the resetting of QScintillaWidget'\''s font size. commit 293d290285721b5ce773608a0beac072b23d7b1c Author: Alan Garny Date: Mon Dec 16 10:20:56 2013 +0100 Slight updates to our developer documentation [ci skip]. commit 44733a87440f62717c1010ae00fecce74632194e Author: Alan Garny Date: Mon Dec 16 09:57:35 2013 +0100 Slight update to QScintilla [ci skip]. commit 6ed15fefc6e7012d5586ebaa7c0c16c5dc14d178 Author: Alan Garny Date: Sun Dec 15 10:13:43 2013 +0100 Fixed a small issue with QScintilla. commit a3f36ac9db84e85c44df8bdff4a1ed7c5e675dcb Author: Alan Garny Date: Sun Dec 15 09:56:51 2013 +0100 Some minor cleaning up of various files [ci skip]. commit d006c3ad634966ae20be4beed09c5f06865a3758 Author: Alan Garny Date: Sun Dec 15 09:35:57 2013 +0100 Upgraded QScintilla to the latest snapshot available (14 December 2013), which among other things addresses the Retina issue (#248). For now, at least, QScintilla disables buffered drawing on Retina displays. commit 5cca6328dd963442f70e8398795282ae10d66a03 Author: Alan Garny Date: Fri Dec 13 16:57:08 2013 +0100 Re-added a Qt plugin (clearly important for the shape of buttons on OS X, at least) [ci skip]. commit f1ca37c3d87e6bbc8df7519871910c154cd35283 Author: Alan Garny Date: Fri Dec 13 16:49:36 2013 +0100 Hopefully done with properly deploying Mac Extras on OS X [ci skip]. commit e083ac14659a7883354c599a5dbb19d770e575b0 Author: Alan Garny Date: Fri Dec 13 16:08:09 2013 +0100 Had forgotten to deploy Mac Extras on OS X [ci skip]. commit 45968f48f7eb78e9bbae0ffed81aaf2ccbc3f16c Author: Alan Garny Date: Fri Dec 13 15:21:06 2013 +0100 Added a missing Qt library for deployment on Windows and Linux [ci skip]. commit 16975c462f5b5973eeeddf228d7a9a7a7361229a Author: Alan Garny Date: Fri Dec 13 15:06:18 2013 +0100 Fixed an issue with the MathML renderer in Qwt when using Qt 5.2. commit 1864feb6c5e5e7b83ecfc726fc02f13eba470a81 Author: Alan Garny Date: Fri Dec 13 14:42:45 2013 +0100 Some minor cleaning up [ci skip]. commit 95d89bdca3b7d19e3d0bf9b8ac7aeac80c606747 Author: Alan Garny Date: Fri Dec 13 14:12:49 2013 +0100 Removed some Qt plugins when deploying OpenCOR [ci skip]. commit 01f79972250e57a248b4624a0d93a77194d14463 Author: Alan Garny Date: Fri Dec 13 14:12:33 2013 +0100 Removed some Qt plugins when deploying OpenCOR [ci skip]. commit 6e10a0548384e2763ec92270ddf618dcec3f40f2 Author: Alan Garny Date: Fri Dec 13 13:23:18 2013 +0100 Fixed a small issue with QScintilla on OS X [ci skip]. commit a501b40490e21e6f797a4f0821da7f376d1d7d13 Author: Alan Garny Date: Fri Dec 13 11:55:25 2013 +0100 Fixed a small issue with QScintilla on OS X [ci skip]. commit da9c76641023216e0a39479c97e312959f287add Author: Alan Garny Date: Fri Dec 13 09:56:50 2013 +0100 Some work towards building OpenCOR with Qt 5.2. commit 11b09c136f452a53ef32a2c546c535e1acd4710a Author: Alan Garny Date: Thu Dec 12 19:30:26 2013 +0100 Slight update to the developer documentation (Xcode got updated) [ci skip]. commit eb4a0d64ddb820825f5ec0487b43772ee46689a8 Author: Alan Garny Date: Thu Dec 12 17:36:20 2013 +0100 Updated the developer documentation (but not yet the source code), now that Qt 5.2 is out [ci skip]. commit 3b73a2a927cda034f0ef2dd876d66dfcc92fed5e Author: Alan Garny Date: Thu Dec 12 17:31:14 2013 +0100 Fixed a recently introduced issue with our packaging of OpenCOR on OS X. commit 0c8bac827ef6ca83fd5274fe830f6af339994835 Author: Alan Garny Date: Thu Dec 12 17:18:53 2013 +0100 Some minor improvements to the building (without packaging) of OpenCOR on OS X [ci skip]. commit 3d8d1f9fea9a4d9eb2abc07aab2237367d920f57 Author: Alan Garny Date: Thu Dec 12 16:59:03 2013 +0100 Some minor improvements to the building (without packaging) of OpenCOR on OS X [ci skip]. commit 0a38e98e40dfafd4c27c5173b3acfa288140cc85 Author: Alan Garny Date: Thu Dec 12 16:24:40 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit 3bdad2901b7df7d675180e09fc3991ba9999fe8e Author: Alan Garny Date: Thu Dec 12 13:23:26 2013 +0100 Cleaned up the wheelEvent() method of SingleCellViewGraphPanelPlotWidget. commit e5efef968527112957f1b5b724d3dd023a52e73e Author: Alan Garny Date: Thu Dec 12 13:15:40 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit 97b5da82fce435d6c2a2f021903cdafa3b8929eb Author: Alan Garny Date: Thu Dec 12 11:36:01 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit a49580704cca4d1b055541c1fe6c1973ee2e5b33 Author: Alan Garny Date: Wed Dec 11 18:37:19 2013 +0100 Some minor improvements to the building (without packaging) of OpenCOR on OS X [ci skip]. commit ff6647a1de3bde770737291fe1ddd25338214a98 Author: Alan Garny Date: Wed Dec 11 17:20:38 2013 +0100 Minor update to the user documentation [ci skip]. commit cb1dd3417d8f427c50152f05febec4617db084cf Author: Alan Garny Date: Wed Dec 11 14:13:07 2013 +0100 Some minor cleaning up. commit 49b36f8286b42bf8806d60b184caf7008c8cbc46 Author: Alan Garny Date: Wed Dec 11 11:58:02 2013 +0100 Some minor cleaning up. commit e6af186a8749efbec92f9793a55ea8d526f5a989 Author: Alan Garny Date: Wed Dec 11 11:15:43 2013 +0100 Some (initial) work on our PrettyCellMLView plugin (#17). commit 09b702df816b8920e1156da24d66f2dfb6f5e539 Author: Alan Garny Date: Wed Dec 11 11:04:47 2013 +0100 Slight update to the user documentation [ci skip]. commit 1753772040e1fdf393f5c8b40c4af62749948c83 Author: Alan Garny Date: Tue Dec 10 19:19:11 2013 +0100 Fixed the blurry text issue with QScintilla on Retina displays (closes #248). commit e61260564d1cca908df454cd8ed2b091359fc1b2 Author: Alan Garny Date: Tue Dec 10 11:37:25 2013 +0100 Some minor cleaning up [ci skip]. commit 1a312bccdeb82b898ec201c2a13fefd8ba2f242d Author: Alan Garny Date: Mon Dec 9 19:00:15 2013 +0100 Minor cleaning up [ci skip]. commit 1e62d2ca08fa2364f1542b39c97d4e8e3e37157c Author: Alan Garny Date: Fri Dec 6 16:11:14 2013 +0100 Don'\''t actually need to set NSHighResolutionCapable to true (on OS X) since it'\''s the default value [ci skip]. commit ba301fb008c766f277d5e6b4596e61721eda6b03 Author: Alan Garny Date: Thu Dec 5 11:34:53 2013 +0100 Improved the implementation of our Core::doNothing() method. commit 37a837a8564efb1276adb44363dbb5cd01ef2697 Author: Alan Garny Date: Wed Dec 4 18:48:50 2013 +0100 New snapshots. commit ab72b60616547e292977c2d59bd8c4819a948ffd Author: Alan Garny Date: Wed Dec 4 18:42:19 2013 +0100 Our '\''do nothing'\'' loop function still got optimised by GCC, so explicitely asked for no optimisations on Linux. commit 9bdbbbfbca84753e20c2cc15f0f9fabb720c17af Author: Alan Garny Date: Wed Dec 4 18:30:24 2013 +0100 Got our '\''do nothing'\'' loop to work properly when compiling with optimisations. commit 6d77ffc568dd1e63fe79a0611a4f517bbc8548de Author: Alan Garny Date: Wed Dec 4 17:17:29 2013 +0100 Improved the delay between two data points (closes #250). commit 1c039a2a30d5b252ff8a8d181486cef5818f73d0 Author: Alan Garny Date: Wed Dec 4 16:48:48 2013 +0100 Some minor cleaning up. commit 33db8d52ba0ea08c72629def1c9efae0f95bc8cc Author: Alan Garny Date: Wed Dec 4 16:30:19 2013 +0100 Some minor cleaning up. commit a9b3c2cc96ed07a8a175967fa51748cfe4d95728 Author: Alan Garny Date: Wed Dec 4 13:53:39 2013 +0100 Slight improvement to the timing code (and not timing itself) of a simulation. commit c99ea489f906db4abac60155cb6bc9153dbd8677 Author: Alan Garny Date: Wed Dec 4 11:30:31 2013 +0100 Some minor cleaning up. commit a85375bc72f8fd7d49baf4e821f8676fc475d176 Author: Alan Garny Date: Tue Dec 3 18:05:26 2013 +0100 Fixed a memory leak. commit 06e257f40b42abe1a9c2059670c491945b598a11 Author: Alan Garny Date: Tue Dec 3 11:19:55 2013 +0100 Some minor cleaning up [ci skip]. commit c558a3694e7e47e941ae82e7ba21a60e95c0981a Author: Alan Garny Date: Mon Dec 2 15:41:57 2013 +0100 Some minor improvements to our Info.plist template [ci skip]. I was hoping that setting NSHighResolutionCapable to true would make a difference with regards to issue #249, but it doesn’t… commit ec94ad2782df4420e2f4751a7d645c0bd39b3587 Author: Alan Garny Date: Mon Dec 2 12:52:55 2013 +0100 Upgraded QScintilla from version 2.7.2 to version 2.8. commit facaf3d6ffa55674e1731c0dc4633b2447c22225 Author: Alan Garny Date: Mon Dec 2 11:55:49 2013 +0100 Minor update to the developer documentation [ci skip]. commit 720566cc1b84c44d54e8e220763f6332beb7ad6f Author: Alan Garny Date: Thu Nov 21 10:27:21 2013 +0100 Some minor cleaning up. commit a65a7748926a9f97edf40026eeb189e51c3f0eb2 Author: Alan Garny Date: Wed Nov 20 14:44:56 2013 +0100 Minor improvement to our downloads page. commit 26137d0152ff2e6d7eadc7b06f0e69b5854fccf4 Author: Alan Garny Date: Wed Nov 20 14:36:52 2013 +0100 Minor improvement to our main CMake file. commit d10521187f9951fd50f09fab80cd7ae4dadfbf5f Author: Alan Garny Date: Wed Nov 20 13:32:53 2013 +0100 New snapshots. commit f646822107f0e616d27d20bdb1a72cd4e4770fdc Author: Alan Garny Date: Wed Nov 20 11:52:50 2013 +0100 Updated our downloads page [ci skip]. commit e9d9ac34c4a1b4d6a48caab7256ca9c7419b2c8e Author: Alan Garny Date: Wed Nov 20 11:18:04 2013 +0100 Updated our user documentation to account for our RawCellMLView and RawView plugins [ci skip]. commit 25caa2ea2c39585f5dea670717a501702ea73d3e Author: Alan Garny Date: Wed Nov 20 10:47:39 2013 +0100 Re-enabled some plugins that got disabled for version 0.2. Also some minor cleaning up. commit 92272bbb28a0f80b71055c6581e0b444a9d68eca Author: Alan Garny Date: Wed Nov 20 09:59:52 2013 +0100 Some minor cleaning up. commit 304cf6f4501823635fb223fbac768e90e233cecc Author: Alan Garny Date: Wed Nov 20 09:39:25 2013 +0100 Minor cleaning up [ci skip]. commit 1420b594f567fe70daf52b85e6863053f88344ed Author: Alan Garny Date: Tue Nov 19 19:16:24 2013 +0100 Version 0.2 released, back to generating snapshots [ci skip]. commit e8f78e917a02ea4688da612fdf0f6b40f886ef8d Author: Alan Garny Date: Tue Nov 19 17:19:17 2013 +0100 Version 0.2. commit e4fc14dbfcfc6b2a89fdd7ade55eaf4c9f3c45d6 Author: Alan Garny Date: Tue Nov 19 17:02:50 2013 +0100 SingleCellView plugin: don'\''t remove all the graphs when no files are left open. Indeed, if after having closed all files, we decide to open one, we might then be happy to have the graphs still there… commit a1c20ecdc3a3259bf307a2395db82980cb8fc0a9 Author: Alan Garny Date: Tue Nov 19 16:56:40 2013 +0100 Fixed an issue with reloading files in the SingleCellView plugin, resulting in a slight improvement to our GUI interface. commit a801d21cafb33e06303fbdbef7c810afcb577127 Author: Alan Garny Date: Tue Nov 19 16:51:15 2013 +0100 Minor improvement to our CellML support plugin. commit 1c6156fe86f414bbfc92a6120a4a4ab71dd86ca8 Author: Alan Garny Date: Tue Nov 19 13:03:42 2013 +0100 Slowly getting ready for version 0.2. commit 034a90d49e1af5b1999c001bc8644c2e57d0316c Author: Alan Garny Date: Tue Nov 19 11:54:47 2013 +0100 Slowly getting ready for version 0.2. commit a4220e5e6f006f739c319894e00d1d998efe4817 Author: Alan Garny Date: Tue Nov 19 11:32:22 2013 +0100 Slowly getting ready for version 0.2. commit 4f00c79695f4784c5dc358127d6c5266702ac21a Author: Alan Garny Date: Tue Nov 19 11:11:36 2013 +0100 Some minor cleaning up. commit 1137eda200e4e3a7bc783d0692d4f5f4a1eebd2e Author: Alan Garny Date: Tue Nov 19 09:27:05 2013 +0100 Replaced a couple of '\''static const QString'\'' to '\''static const auto'\''. Had missed those since they are in a plugin that we disabled for version 0.2. commit c2dcd9fc7a78e79a57c700d55c5b7ee6c210396a Author: Alan Garny Date: Mon Nov 18 19:59:29 2013 +0100 Some minor improvements to the formatting of a plugin error. commit 4b28a37ea0fc1b2a4c784ce450309cd98622df28 Author: Alan Garny Date: Mon Nov 18 19:29:25 2013 +0100 Fixed some issues that got reintroduced when working on our building the CellML API. commit 7ad952bb9ea7acc30779aacc2e03d109b410da7a Author: Alan Garny Date: Mon Nov 18 17:29:29 2013 +0100 Some minor cleaning up [ci skip]. commit fb3a42e8ac1d3356f5f2328ef9c193c097f129f0 Author: Alan Garny Date: Mon Nov 18 16:57:54 2013 +0100 Tell the user why a plugin couldn'\''t be loaded, should that happen. commit d8c7eb3284d23bf8ec9160b5af3b08cbf1b1e723 Author: Alan Garny Date: Mon Nov 18 16:56:57 2013 +0100 Some minor cleaning up [ci skip]. commit 2686142affa3fbfe45c12cc34627837655c55acd Author: Alan Garny Date: Mon Nov 18 16:34:42 2013 +0100 Some minor cleaning up. commit dce9946d82879127624c8e329e787548777135b2 Author: Alan Garny Date: Mon Nov 18 16:32:40 2013 +0100 Updated the LLVM binaries on Windows, now that we use C++11 to build OpenCOR. commit f7c826ba980de9f8e3d63c3ba4b1ee3a8c238ba5 Author: Alan Garny Date: Mon Nov 18 14:55:14 2013 +0100 Updated the CellML API binaries on Windows and Linux, and the LLVM binaries on Linux, now that we use C++11 to build OpenCOR. commit 85db3ca13eafb75fbd6dd0d047f9362d59c70d60 Author: Alan Garny Date: Mon Nov 18 13:48:05 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit f7572a8026f60a61317069f3c2b15259568b4b6c Author: Alan Garny Date: Mon Nov 18 11:52:27 2013 +0100 Update the CellML API and LLVM binaries on OS X, now that we use C++11 to build OpenCOR. commit bab14bc6fe954634dd293fdc052aa00e74471169 Author: Alan Garny Date: Sat Nov 16 01:12:45 2013 +0100 Some minor cleaning up. commit 19c161e9ea86876710ddd213a365c7d7aab92344 Author: Alan Garny Date: Sat Nov 16 00:56:16 2013 +0100 Some minor cleaning up. commit c8dc25964c912582e72f646f1691aa885b632c6b Author: Alan Garny Date: Sat Nov 16 00:41:21 2013 +0100 On OS X, make sure that we use at least the Mac OS X 10.7 SDK. commit 7fff25d351dfb8da12aa65a1e2c667968568d77b Author: Alan Garny Date: Sat Nov 16 00:40:40 2013 +0100 Some minor cleaning up of common CMake file [ci skip]. commit 5f7ee80321a836d6f6aa988252a2a24503df4dd3 Author: Alan Garny Date: Fri Nov 15 17:07:06 2013 +0100 Some minor cleaning up. commit 94466165325b0881abd86cab1b56fefc13bd2988 Author: Alan Garny Date: Fri Nov 15 13:38:24 2013 +0100 Some minor cleaning up [ci skip]. commit c3403e1f11ab2798bf81f7c8fff926ff95eb18d1 Author: Alan Garny Date: Fri Nov 15 13:32:59 2013 +0100 Trying to use C++11 [ci skip]. commit 29d9ac739083abe885c8a369d2ff411411d2a0f1 Author: Alan Garny Date: Fri Nov 15 13:29:45 2013 +0100 Trying to use C++11 [ci skip]. commit 5d13460c09b649fd0333841471b8edbca24b49ba Author: Alan Garny Date: Fri Nov 15 13:28:57 2013 +0100 Trying to use C++11 [ci skip]. commit d7010b48b9b23a9794998dbc94a86c3b3b45a13d Author: Alan Garny Date: Fri Nov 15 13:20:55 2013 +0100 Trying to use C++11 [ci skip]. commit 32d58feecfcd76456058f1f2f2dddce016bdeb25 Author: Alan Garny Date: Fri Nov 15 13:12:19 2013 +0100 Trying to use C++11 [ci skip]. commit 159baba26bb897fb3a91fbfb72ad2ac6776aae0c Author: Alan Garny Date: Thu Nov 14 18:51:09 2013 +0100 Some minor cleaning up [ci skip]. commit dd4e36189fdb672fddd0c7698b9696ff4a4a782f Author: Alan Garny Date: Thu Nov 14 18:40:05 2013 +0100 Some minor cleaning up [ci skip]. commit 2802d608d14f1082039b50374f8f762ebd438c90 Author: Alan Garny Date: Thu Nov 14 18:38:33 2013 +0100 Some minor cleaning up [ci skip]. commit 4d06bfadefa8f107ab368d55e3634c6c6842d0f2 Author: Alan Garny Date: Thu Nov 14 18:23:39 2013 +0100 Addressed a gcc limitation when it comes to suppressing warnings. commit ad8156fba3d46feea0e2d8724b8311ab12743aec Author: Alan Garny Date: Thu Nov 14 17:18:59 2013 +0100 Some minor improvements to our compiler flags strategy [ci skip]. commit b9bbde26d4afb69a3404447f8e01dbe48df5dd91 Author: Alan Garny Date: Thu Nov 14 17:06:30 2013 +0100 Some minor improvements to our compiler flags strategy [ci skip]. commit 53939688a75f82cd925267240d3b804932c64060 Author: Alan Garny Date: Thu Nov 14 16:43:06 2013 +0100 Got our latest commit to build on Windows [ci skip]. commit 9363e58e0cb84efe0021e909bdab8ccb1e881735 Author: Alan Garny Date: Thu Nov 14 15:44:12 2013 +0100 Some minor cleaning up of code (to respect our coding style) [ci skip]. commit 15c126ecec9b45f5b04b09c8869158589e680e57 Author: Alan Garny Date: Thu Nov 14 15:14:26 2013 +0100 Some updates to our developer documentation [ci skip]. commit a243ccda43f0bc84b3086abf37cdf010c965357d Author: Alan Garny Date: Thu Nov 14 13:13:05 2013 +0100 Some minor cleaning up of code (to respect our coding style). commit 44ab2eb2db3c16922716ad3e5eda651112f2c61e Author: Alan Garny Date: Thu Nov 14 13:13:00 2013 +0100 Some updates to our developer documentation [ci skip]. commit 1e78f449bca5ec1cd41f5f5762a52c9f5cb10e76 Author: Alan Garny Date: Thu Nov 14 11:13:00 2013 +0100 Some minor cleaning up of code (to respect our coding style). commit df7f11d64d8f4b08b698baaba582b99524cba93f Author: Alan Garny Date: Wed Nov 13 18:59:06 2013 +0100 Some updates to our developer documentation [ci skip]. commit 5eb7264c080318e446c8d8e23d69e7701ec661b3 Author: Alan Garny Date: Wed Nov 13 18:01:14 2013 +0100 Slight improvement to our plugins window. commit f0dac87a19ad38c98e57c3fb71448517ab8c7b58 Author: Alan Garny Date: Wed Nov 13 17:56:40 2013 +0100 Slight improvement to our plugins window. commit 071056b9e5cc10c0a71db0fe069843ab29d0ed76 Author: Alan Garny Date: Wed Nov 13 17:39:02 2013 +0100 Some updates to our user documentation [ci skip]. commit 5456061d16c06e119de2fb951fe28f748308232d Author: Alan Garny Date: Wed Nov 13 17:13:45 2013 +0100 Some updates to our user documentation [ci skip]. commit 00aaa57aea4ca8c2232df6413181f276be70f704 Author: Alan Garny Date: Wed Nov 13 16:35:32 2013 +0100 Some updates to our user documentation [ci skip]. commit a88e1b069b489e70ff4f81f146d4c4bfd55867e6 Author: Alan Garny Date: Wed Nov 13 14:53:30 2013 +0100 Re-disabled some plugins in preparation for version 0.2. commit 40bcbbb853c02fc5c9838f3fcb7bcaaa8deffa2e Author: Alan Garny Date: Wed Nov 13 14:48:38 2013 +0100 Some updates to our user documentation [ci skip]. commit 034880c84a6d60a8c2f1030c46103da892917966 Author: Alan Garny Date: Wed Nov 13 13:52:53 2013 +0100 Got the Windows CLI version of OpenCOR to work again (following some of our minor refactoring). commit 3664c11381f64ba77bcea15a31ef68bb77fc0fad Author: Alan Garny Date: Wed Nov 13 11:57:16 2013 +0100 Some minor refactoring. commit 1afd313e5102e4d63210135a373a1b004ab8cd98 Author: Alan Garny Date: Wed Nov 13 11:42:05 2013 +0100 Some minor refactoring. commit 223e7716354ae3bd78e958e396752a479a3d0ee7 Author: Alan Garny Date: Wed Nov 13 11:07:53 2013 +0100 Moved some GUI utils to CLI utils. commit 3438d40faa1d6ea421115321cd7d13612ea4d0c7 Author: Alan Garny Date: Wed Nov 13 10:05:52 2013 +0100 Some minor refactoring. commit 73257aba37ca771c8d6896fabfaee74c1b251a16 Author: Alan Garny Date: Wed Nov 13 10:01:02 2013 +0100 Some minor improvements to our plugins window. commit 5bd49e12aae1db3aad29fd972df5add5cb3442b7 Author: Alan Garny Date: Tue Nov 12 18:27:30 2013 +0100 Updated the LLVM plugin on Windows [ci skip]. commit 3f6875fe5172f44f57b4045ccfa483347f634cf1 Author: Alan Garny Date: Tue Nov 12 17:29:14 2013 +0100 Updated the LLVM plugin on Linux and OS X. commit b4c648a5ca9a4832681584610b21bcec470872ef Author: Alan Garny Date: Tue Nov 12 17:23:29 2013 +0100 Some minor cleaning up [ci skip]. commit aa3f5b34e79059947049e8d2f12994690879bc12 Author: Alan Garny Date: Tue Nov 12 17:01:46 2013 +0100 Temporarily re-enabling some plugins so we can make sure that everything works fine on all our supported platforms. commit 6c1bb121383b3d88e069670eeedfc8618a0c7fc7 Author: Alan Garny Date: Tue Nov 12 16:56:33 2013 +0100 Moved some plugins to their correct category. commit d81ee9f9f73dc58b5f2adf5df5730d005c39aa4c Author: Alan Garny Date: Tue Nov 12 16:46:01 2013 +0100 Added some new categories for our plugins. commit a0fc13df3ca7a3ef5f982518a01279c0addda7a3 Author: Alan Garny Date: Tue Nov 12 15:17:27 2013 +0100 Some minor work on our plugins window. commit 5b7f54a715b9679e5cfb9749f6506199943c1e1a Author: Alan Garny Date: Tue Nov 12 15:17:01 2013 +0100 Some minor cleaning up [ci skip]. commit 567057950838b00dff68e1fc281df7404c865916 Author: Alan Garny Date: Tue Nov 12 14:41:03 2013 +0100 Updated the LLVM plugin on OS X [ci skip]. commit 3a4dac12939bb60abcf79a695ab3bbee2d7bbaf0 Author: Alan Garny Date: Tue Nov 12 14:37:54 2013 +0100 Some work on our developer documentation [ci skip]. commit e5b0e9a547e742ccd9a0cc02ef244a9115d90db5 Author: Alan Garny Date: Tue Nov 12 14:23:32 2013 +0100 Some work on our plugin architecture [ci skip]. commit 5be1bb140824605239dbcbf74b661daff21a50ba Author: Alan Garny Date: Tue Nov 12 13:57:35 2013 +0100 Some minor cleaning up. commit 67552f51e1ad398049494588907613a546f5adea Author: Alan Garny Date: Mon Nov 11 11:14:04 2013 +0100 Some explanations about our '\''new'\'' plugin information. commit d75fb1ec6268680d85756f1ccd32d49382b5267b Author: Alan Garny Date: Sun Nov 10 20:59:37 2013 +0100 Updated our LLVM binaries since we removed the CLI support information in our plugins. commit f067a199fad8eee749783142fd3a7753929b5989 Author: Alan Garny Date: Sun Nov 10 19:58:45 2013 +0100 Some further cleaning up of our plugin information, resulting in the addition of the CLI interface. commit 3f4c3b36048ece6ae0ee032660d0f02953cf711b Author: Alan Garny Date: Sun Nov 10 18:16:42 2013 +0100 Some work on our developer documentation [ci skip]. commit a35cee80110dc571c8a3b7ed3abb09b391727962 Author: Alan Garny Date: Sun Nov 10 18:16:21 2013 +0100 Some minor cleaning up of our CMake files. commit ae57e32214eb75b77dbdf2a67de168783ffc0924 Author: Alan Garny Date: Sun Nov 10 15:46:39 2013 +0100 Updated our LLVM binaries since we removed the interface version in our plugins. commit 3ecc4f6d3c41c2d6c41369bfa33a52c14ff0ee4d Author: Alan Garny Date: Sun Nov 10 15:44:41 2013 +0100 Some work on our developer documentation [ci skip]. commit 1450730a4a34154fc98bf827c83df78652d3b22c Author: Alan Garny Date: Sun Nov 10 13:14:06 2013 +0100 Don'\''t use an interface version for our plugins [ci skip]. Our plugin interface is hardly going to change and if it was ever to change then plugin developers would just have to update their plugin. commit 0aada5e661d1e4d64c400797e800089f997ad69b Author: Alan Garny Date: Sun Nov 10 13:08:33 2013 +0100 Some work on our developer documentation [ci skip]. commit 56e4ab175f8c1fda4f52c00194876d837ad1b8d8 Author: Alan Garny Date: Fri Nov 8 18:16:17 2013 +0100 Some work on our developer documentation [ci skip]. commit be0d145a9ea7a741aa50699830c272ea70fb032f Author: Alan Garny Date: Fri Nov 8 16:34:55 2013 +0100 Some work on our developer documentation [ci skip]. commit 4ba4d23fc3af38d7b70b03efe96252de69cb1e19 Author: Alan Garny Date: Fri Nov 8 16:14:27 2013 +0100 Some minor cleaning up [ci skip]. commit 13ffeef8367cb1a0d14db16a326c30096555c9fb Author: Alan Garny Date: Fri Nov 8 15:58:40 2013 +0100 Some work on our developer documentation [ci skip]. commit 926472de89e02f8c7a20ca2a9c85abcdc268dcbf Author: Alan Garny Date: Fri Nov 8 13:56:34 2013 +0100 Some work on our developer documentation [ci skip]. commit 4b319d257ba9541cfabc3396496b7f02da778086 Author: Alan Garny Date: Fri Nov 8 11:34:32 2013 +0100 Some minor cleaning up. commit 2cd4112d85839b09d5c1dd2023da6af51301eb23 Author: Alan Garny Date: Fri Nov 8 10:45:32 2013 +0100 Some work on our user and developer documentations [ci skip]. commit 0fe8c7014f26d2a259516c91ec75595a29368a29 Author: Alan Garny Date: Thu Nov 7 16:30:29 2013 +0100 Some minor work on our developer documentation [ci skip]. commit 848fda3f7742d068b56557c11f5365c1f4de692b Author: Alan Garny Date: Thu Nov 7 16:30:12 2013 +0100 Some work on our user documentation [ci skip]. commit 9af4a04c5278a4e5d2853c0f3c9a00401abc5f1a Author: Alan Garny Date: Wed Nov 6 18:01:26 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 809144578043f77a292022ae22279bf1fa163c51 Author: Alan Garny Date: Wed Nov 6 17:52:30 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 148ee6d3bff133e83347bcd24c2c176556506568 Author: Alan Garny Date: Wed Nov 6 17:31:42 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 4784e1d53aba5d397c4a04a911db3664a17741c8 Author: Alan Garny Date: Wed Nov 6 17:21:04 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 81e70be8d883db6d28777d1e45c13a03f25393ea Author: Alan Garny Date: Wed Nov 6 17:00:50 2013 +0100 Minor fixes for our CellMLAnnotationView plugin. commit 0f93591b12eb74198996ad13edf546b0386d6082 Author: Alan Garny Date: Wed Nov 6 16:39:14 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 48b1cca3603b794539511fee9a06d6d4c6e03fcb Author: Alan Garny Date: Wed Nov 6 16:38:55 2013 +0100 Minor fix for our CellMLAnnotationView plugin. commit ad93427158433c6f0411b8ed80823566dcf6924c Author: Alan Garny Date: Wed Nov 6 15:31:34 2013 +0100 Some minor cleaning up of our user documentation [ci skip]. commit 142c2c740aa960f784bb8ea9af3b71c5c88ef529 Author: Alan Garny Date: Wed Nov 6 15:01:00 2013 +0100 Updated some screenshots for the user documentation [ci skip]. commit c177a09bf743c6025ca1ba4f583e8891c914079b Author: Alan Garny Date: Wed Nov 6 14:48:21 2013 +0100 Some minor cleaning up. commit 303633288fd329d281371fda5da04360c750c632 Author: Alan Garny Date: Wed Nov 6 14:30:24 2013 +0100 Updated some screenshots for the user documentation [ci skip]. commit 652ea1d5a37c0eb2af4775f6b5b89421e78c9014 Author: Alan Garny Date: Wed Nov 6 14:16:36 2013 +0100 Updated our .gitignore file now that we have two more redistributable files for Windows [ci skip]. commit 50497e3cdc18cc09bcf0cd67e57f9282ca368e3c Author: Alan Garny Date: Wed Nov 6 14:10:08 2013 +0100 Added a couple of DLLs that are needed for the Windows package. This is so that the CellML Model Repository plugin can work properly since it now requires of SSL (to ignore the SSL certificate). commit 6c6a36c8b3093218e629d15839b40743e1bea7ab Author: Alan Garny Date: Wed Nov 6 11:41:31 2013 +0100 Some minor cleaning up. commit f4a7164aede6fc7fa094962ba80fdb15f132fc16 Author: Alan Garny Date: Wed Nov 6 11:06:37 2013 +0100 Some minor cleaning up. commit 13897e0309ac89a7d0566cf22d6c60af4b4b556a Author: Alan Garny Date: Tue Nov 5 18:50:56 2013 +0100 Updated some of the user documentation [ci skip]. commit a2b892d58527e221f997c5c91b32c034b005a540 Author: Alan Garny Date: Tue Nov 5 18:36:00 2013 +0100 Recognise OS X 10.9 (Mavericks). commit 2861b2519c33166333fe3a032fedf735c5f9937c Author: Alan Garny Date: Tue Nov 5 17:54:37 2013 +0100 Updated our download page [ci skip]. commit 6cec62e3f5a4a5b8d1b19eeb463f70cf6d49d2d2 Author: Alan Garny Date: Tue Nov 5 11:58:52 2013 +0100 Updated our download page [ci skip]. commit 772957ba346ea9103f701e1a13fbb9debcc06898 Author: Alan Garny Date: Mon Nov 4 18:25:59 2013 +0100 Update our documentation. commit 1680cb8e7e21c01dc825b9d0a8eec1767bfe0607 Author: Alan Garny Date: Mon Nov 4 11:47:36 2013 +0100 Some minor updates to our documentation [ci skip]. commit 294e1d042115e4c15ebdbaa5df31d94d08dd1028 Author: Alan Garny Date: Thu Oct 31 19:00:13 2013 +0100 Minor update to our documentation readme file [ci skip]. commit f5f310a4c1986132ed22ed9347c3faedb399b2bc Author: Alan Garny Date: Thu Oct 31 18:33:22 2013 +0100 New snapshots. commit 2a0bd8e2264b00985f84f784ddb991d4b3ef692d Author: Alan Garny Date: Thu Oct 31 18:13:40 2013 +0100 Some work on renaming a file and its consequences on view plugins. commit cd6586bd0c93cbb74b42d2011e657fe100b46f46 Author: Alan Garny Date: Thu Oct 31 17:47:21 2013 +0100 Fixed an issue with view plugins when closing OpenCOR. commit a06846f46bcf724df6af523369f54ec4da980eff Author: Alan Garny Date: Thu Oct 31 15:43:15 2013 +0100 Some work on the reloading feature in the Raw view and Raw CellML view plugins. commit 9cd8be463ff1747dcad5fcdde22ec3c53cb8162c Author: Alan Garny Date: Thu Oct 31 15:32:46 2013 +0100 Some minor cleaning up. Also fixed an issue with the reloading of a file in the Single Cell view plugin. commit bc4632af3697f93d95409bd7a5095e2b73e97f3c Author: Alan Garny Date: Thu Oct 31 13:22:41 2013 +0100 Only clean up the Qt frameworks when packaging OpenCOR. commit 62f4da3c4be00420441b4d90a5eaae8515ded24b Author: Alan Garny Date: Thu Oct 31 10:50:40 2013 +0100 Some minor cleaning up [ci skip]. commit 3b678cb6c2f7561b2c80ac4fa73dc1309fc672c9 Merge: 2653217f4 452d78e6d Author: Alan Garny Date: Thu Oct 31 10:06:39 2013 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 2653217f40f3f3e96b3e578ad1029451f403aaea Author: Alan Garny Date: Thu Oct 31 09:28:27 2013 +0100 Minor update to our developer documentation [ci skip]. commit 452d78e6d6c99633feee06f39d3fc6be851fe098 Author: Alan Garny Date: Wed Oct 30 23:33:53 2013 +0100 Minor change to our .travis.yml file (mainly wanted to change its hidden attribute on Windows). commit 6c059d0f17de2d6b125388941e7ce94842c75440 Author: Alan Garny Date: Wed Oct 30 19:45:48 2013 +0100 Fixed various minor issues with the setting of the file tab icon in our Single Cell view. commit f9e303096309a155d4c8e774cdfaa9fba8148c01 Author: Alan Garny Date: Wed Oct 30 19:22:13 2013 +0100 Minor improvements following an Xcode anaylsis. commit 412fdd772ca47dbeca4bc4c25154850f5ea6050e Author: Alan Garny Date: Wed Oct 30 19:05:23 2013 +0100 Minor improvements following an Xcode anaylsis. commit dbc461291e6c4bba5fcb40ac618263417524710a Author: Alan Garny Date: Wed Oct 30 18:52:16 2013 +0100 Minor improvements following an Xcode anaylsis. commit f4682b158504b2c61eca1acfc68a09f2d2505465 Author: Alan Garny Date: Wed Oct 30 17:57:50 2013 +0100 Minor improvements following an Xcode anaylsis. commit 5a379545d22a9085abbf80d36eac0f89ab58d83d Author: Alan Garny Date: Wed Oct 30 14:51:02 2013 +0100 Minor improvements following an Xcode anaylsis. commit 8f5fdfaf5143fbebbd771ea6437bd96c2db28248 Author: Alan Garny Date: Wed Oct 30 13:13:46 2013 +0100 Fixed an issue with building LLVM on OS X. Could that issue be a result of our build system having changed?... commit 0ab2e559517d418e10bd3d5d8953712fd7ba18dd Author: Alan Garny Date: Wed Oct 30 11:52:03 2013 +0100 Fixed an issue with our OS X bundle now that we have modified our build system. commit 0e93e06a0a9cb745310b585c77ada32d540fb22c Author: Alan Garny Date: Wed Oct 30 10:58:26 2013 +0100 Trying to be too smart... commit 810fafe2f8515659fc941439873ff701f5fd0aa6 Author: Alan Garny Date: Wed Oct 30 10:49:57 2013 +0100 Allow offscreen execution only if the tests are built on Travis CI. commit 64a4dd3021cad6bb05637977e8e237d342de91c1 Author: Alan Garny Date: Wed Oct 30 10:31:45 2013 +0100 Allow offscreen execution only if built on Travis CI. commit a3589d5a893ea974b57f78a30b19a1c0243b44b6 Author: Alan Garny Date: Wed Oct 30 10:16:53 2013 +0100 Fixes an issue with our tests now that we have modified our build system. commit fd7548eeb4db9c457440815d0109443a25e04a7a Author: Alan Garny Date: Wed Oct 30 10:05:24 2013 +0100 Re-arranged where update our CMake policies (we still had the warnings on Windows) [ci skip]. commit 3ff0917443ffbf7848e621dfb040523308c6b290 Author: Alan Garny Date: Wed Oct 30 09:26:22 2013 +0100 Some minor work on our common.cmake file. commit a03117eb45a8254f52b32d4f33473760992a1c21 Author: Alan Garny Date: Wed Oct 30 00:25:00 2013 +0100 Some minor cleaning up of some of our build-related files. commit c484906e0dd533454f393761bdf6935f175315a9 Author: Alan Garny Date: Tue Oct 29 19:37:23 2013 +0100 Some minor cleaning up [ci skip]. commit 262d076536f28e28d1cd666e776a35ea65446b90 Author: Alan Garny Date: Tue Oct 29 19:11:51 2013 +0100 Hopefully fixes our tests on Linux! Doesn'\''t make sense to me since OpenCOR was built in the same way as the tests, yet the LLVM-based tests wouldn'\''t work... commit 240dc8475bebadaa1d2121c6af606b274d40e0ff Author: Alan Garny Date: Tue Oct 29 17:15:59 2013 +0100 Fixed a minor CMake issue for Windows. commit f45fb5903978a0dc0c332796d8a469344e4317f3 Author: Alan Garny Date: Tue Oct 29 16:53:02 2013 +0100 Language files can safely be generated in CMAKE_BINARY_DIR. Also fixed a minor issue we just introduced with packaging on Linux. commit 3a4e47a009ecdb046b23804f1acc8a2383be3a1f Author: Alan Garny Date: Tue Oct 29 16:39:09 2013 +0100 Cleaned up some of our CMake files. commit 9515dd1b777681a6c50c320ac81f9a8589dda52c Author: Alan Garny Date: Tue Oct 29 16:14:24 2013 +0100 Some minor work on our common.cmake file. commit 8211fd5b6a582fcc845397d461fd1a8f3fc06186 Author: Alan Garny Date: Tue Oct 29 16:08:31 2013 +0100 Cleaned up some of our CMake files. commit 2769109ae05c72a4de2b73d46fbe6807b63e4ec0 Author: Alan Garny Date: Tue Oct 29 15:05:53 2013 +0100 Addressed an issue that prevented us from closing OpenCOR using Ctrl+Q on Linux. commit 578b4aa8982833d7fb5a5d9d220181d71e46b80d Author: Alan Garny Date: Tue Oct 29 14:23:35 2013 +0100 Cleaned up some of our CMake files. commit 29701e00c94aa11d40bca460472c3b626790a76b Author: Alan Garny Date: Tue Oct 29 11:15:19 2013 +0100 Some minor cleaning up. commit 03aab3339875b3517dadea1a854d3c3afaf7412e Author: Alan Garny Date: Tue Oct 29 10:49:58 2013 +0100 Some minor cleaning up. commit 58b01d249a12c6e79a22edba4e4804bf10e69f4e Author: Alan Garny Date: Tue Oct 29 10:22:01 2013 +0100 Some minor cleaning up. commit 21c8f5425cda1316ef6756f356269a859d4230e0 Author: Alan Garny Date: Mon Oct 28 16:03:58 2013 +0100 Minor correction to a comment [ci skip]. commit 74dbd01c3db3a0eece5e2de052a49a6a94b6f088 Author: Alan Garny Date: Mon Oct 28 15:24:04 2013 +0100 Fixed a small issue with the progress bar in our Single Cell view. commit 7df17c3e42216ae143afdedf786b9e1b01d15082 Author: Alan Garny Date: Mon Oct 28 12:48:24 2013 +0100 Some work towards reloading a file in the Single Cell view (#159 and #233) [ci skip]. commit 9f7e89cf9f1c2e7098f8abfa2a1818949be265e3 Author: Alan Garny Date: Mon Oct 28 12:37:59 2013 +0100 Some work towards reloading a file in the Single Cell view (#159 and #233). commit c95edcbc3c7bf5a92c4dbd9c540b1fbe0de0fd77 Author: Alan Garny Date: Mon Oct 28 12:29:10 2013 +0100 Some work towards reloading a file in the Single Cell view (#159 and #233). commit 917c094d7adfe3fbc7d5f07aa412597ba9cae852 Author: Alan Garny Date: Mon Oct 28 10:27:15 2013 +0100 Added another test for our CellMLTools plugin. commit 35e75ac0a1735780b0c54935e86abc8511769ae2 Author: Alan Garny Date: Sun Oct 27 19:52:53 2013 +0100 Minor improvement to our CellMLSupport plugin. commit 30edc824606b73dcbf77b4cad4976d775ab351dc Author: Alan Garny Date: Sun Oct 27 19:19:09 2013 +0100 Some minor cleaning up. commit 33dce7e6b599adfbe998ad2eee7879e8016133ae Author: Alan Garny Date: Sun Oct 27 13:49:44 2013 +0100 Some minor cleaning up. commit 9a5eeefbc3d5bd0149b271203cd8afd5117749a9 Author: Alan Garny Date: Fri Oct 25 17:48:05 2013 +0200 Some work towards reloading a file in the Single Cell view (#159 and #233). commit b6251c151b9d07bd8c43ee8c04a0d23106549e0d Author: Alan Garny Date: Fri Oct 25 17:34:52 2013 +0200 Some work towards reloading a file in the Single Cell view (#159 and #233). commit f016ad1ae7e563e27a39e51fe70153987191840e Author: Alan Garny Date: Fri Oct 25 17:27:57 2013 +0200 Let a caller know whether a simulation-related action has been carried out. commit 3a1ffe23beb7ee6f0106bb2bf3398cb7cd8dd466 Author: Alan Garny Date: Fri Oct 25 16:36:08 2013 +0200 Some minor cleaning up [ci skip]. commit 3325bae3ee5970d454d20e3d609503e6cb25fa90 Author: Alan Garny Date: Fri Oct 25 15:48:43 2013 +0200 Some minor cleaning up [ci skip]. commit ffd6b14a0d406887f00cc5afc005f14d237624e7 Author: Alan Garny Date: Fri Oct 25 15:32:09 2013 +0200 Some minor cleaning up. commit 66070b476dff711fadd65b2598c8739c443e2fb8 Author: Alan Garny Date: Fri Oct 25 15:21:52 2013 +0200 Can now properly navigate the property editor widget using the keyboard (closes #247). commit 21d0a8399de5ad73dae605ec8597e9ec593ad8b4 Author: Alan Garny Date: Fri Oct 25 14:35:53 2013 +0200 Some minor cleaning up. commit 4ebada784ecd4656db1e0bb00de1335c36c60054 Author: Alan Garny Date: Fri Oct 25 14:10:08 2013 +0200 Some work towards reloading a file. The CellML Annotation view can now reload a file (#159 and #233). commit a7f6d71e0fd2e32f369e606cc8152831943819bc Author: Alan Garny Date: Fri Oct 25 13:40:22 2013 +0200 Some minor cleaning up. commit 98d3857e262ae54cbc5a2d51867db3f2c2dea217 Author: Alan Garny Date: Fri Oct 25 12:01:42 2013 +0200 Some minor cleaning up. commit 726363916eb9966d359bff21ac426e7fab076a67 Author: Alan Garny Date: Fri Oct 25 11:53:23 2013 +0200 Some work towards reloading a file (#159 and #233). commit 6b910a7ff28ab16ed20842ecaa76f32d4efcf842 Author: Alan Garny Date: Fri Oct 25 11:10:09 2013 +0200 Some work towards reloading a file (#159 and #233). commit e867b0bfc341f4757c7e87cf221b495dc88c1911 Author: Alan Garny Date: Fri Oct 25 09:38:27 2013 +0200 Some work towards reloading a file (#159 and #233). commit 2a980ebc614a622a31b579200ceff26f03d13b7d Author: Alan Garny Date: Thu Oct 24 17:16:04 2013 +0200 Some work towards reloading a file (#159 and #233). commit dc9608182c9f40c33267a465fb85c9b7a461d70e Author: Alan Garny Date: Thu Oct 24 16:57:53 2013 +0200 Some minor cleaning up [ci skip]. commit b548c1a3da54cd1beabc4c5c64201fba6762ef20 Author: Alan Garny Date: Thu Oct 24 16:21:04 2013 +0200 Some minor cleaning up. commit bc2da2e3d510ef7537026286caf5dee980c3dfa1 Author: Alan Garny Date: Thu Oct 24 15:58:08 2013 +0200 Some work towards reloading a file (#233). commit 51bd2cdbdd04e59ca0c4c88c2f35743987118862 Author: Alan Garny Date: Thu Oct 24 15:42:38 2013 +0200 Some work towards checking whether a file has been modified outside of OpenCOR (#159). commit 8e1be8c218b6b3a5eacab683925e9aad82c307b3 Author: Alan Garny Date: Thu Oct 24 15:24:30 2013 +0200 Fixed a problem with the initial value of model parameters not being shown (closes #246). commit 06f7bd14c2409740e2e0662e22f94bc23ff8ba10 Author: Alan Garny Date: Thu Oct 24 13:44:26 2013 +0200 Disabled some plugins for version 0.2 of OpenCOR. commit dd0c4b95314a2680fdeb05ecaa154f6c1cda987f Author: Alan Garny Date: Thu Oct 24 13:22:58 2013 +0200 Some minor cleaning up. commit 88c0e06fba7adb674db0ca2af69e727b7d084d9e Author: Alan Garny Date: Thu Oct 24 12:34:40 2013 +0200 Minor improvement to our File class. commit 927baa4805e62e133aecb1c364a41a6a9492ea48 Author: Alan Garny Date: Thu Oct 24 12:13:46 2013 +0200 Minor improvement to our File class. Also some minor cleaning up. commit b29509376c357b4b0349fd97a948d86e76245862 Author: Alan Garny Date: Thu Oct 24 11:40:51 2013 +0200 Allow any view to save a file under a new name (not only those that support at least one specific MIME type). commit 050fdc529c6cf4d80b8b688de46b4a708a75e5ce Author: Alan Garny Date: Thu Oct 24 11:16:54 2013 +0200 Some refactoring. commit e9797a9758b065711bf702c70a80245f4446745e Author: Alan Garny Date: Thu Oct 24 10:47:03 2013 +0200 Can now save a file using the Single Cell view (closes #245). Also some minor cleaning up. commit e472b825bddef08a567a2b17cea48570d0c8d856 Author: Alan Garny Date: Thu Oct 24 10:44:10 2013 +0200 Some minor cleaning up. commit f82c8b9bb5b19d0e98aee47cb1bce5a0829e8db1 Author: Alan Garny Date: Wed Oct 23 18:23:44 2013 +0200 Handle the case where a file has been deleted outside of OpenCOR (closes #244). commit 03d158e310ca52605f03c9c78659e00e1c4d08e2 Author: Alan Garny Date: Wed Oct 23 17:09:21 2013 +0200 Slight improvement to our nativeCanonicalFileName() method. commit b76e1ecfb28b1479a7500ed03fb7afe9c600735c Author: Alan Garny Date: Wed Oct 23 16:23:33 2013 +0200 Minor cleaning up. commit 2aa34cd41b86c217be22d8e2df5ed459ddc84870 Author: Alan Garny Date: Wed Oct 23 16:05:50 2013 +0200 Improved the way we check the SHA-1 value of a file. Also fixed our previous commit. commit 405789f54ceebeba4ad150209d49ec646ce18bac Author: Alan Garny Date: Wed Oct 23 15:31:14 2013 +0200 Some minor cleaning up [ci skip]. commit 18b5ffcacba7d2e040f8fd89c4a27e17ff5a085e Author: Alan Garny Date: Wed Oct 23 15:03:04 2013 +0200 Slight improvement to our download page [ci skip]. commit 1708ed51a2342f9a51e74c307cfa25c817b932e7 Author: Alan Garny Date: Wed Oct 23 14:45:39 2013 +0200 Slight CSS improvement to our download page [ci skip]. commit 472fed8ecf1a2cf60ed04e02d5642e1a8b56cbda Author: Alan Garny Date: Wed Oct 23 13:53:32 2013 +0200 Minor update to our documentation following the release of OS X 10.9 (Mavericks) [ci skip]. commit 8ea5f73238ace01a3e5df696c18b9a5d083718a4 Author: Alan Garny Date: Wed Oct 23 13:48:19 2013 +0200 Minor update to our documentation following the release of OS X 10.9 (Mavericks) [ci skip]. commit d6c352999c852d2431ba4c36a4c115477e364d91 Author: Alan Garny Date: Wed Oct 23 13:45:21 2013 +0200 Some minor updates to our documentation following the release of OS X 10.9 (Mavericks) [ci skip]. commit b5ce840623e1795bff9e317f5c3b2e9922c4d3f0 Author: Alan Garny Date: Tue Oct 22 16:44:12 2013 +0200 Reverting to Xcode 4.6.3 since Xcode 5 doesn'\''t come with gdb anymore and lldb is not properly supported in Qt Creator. Also put back the version of NSIS that we actually use. [ci skip] commit aeaec1557f831f9ee971ca42534acda48f44000d Author: Alan Garny Date: Tue Oct 22 11:47:49 2013 +0200 Slight update to the developer documentation [ci skip]. commit 873cf70a26b4ab4ecbb76fe4e99aca9f4fc291b8 Author: Alan Garny Date: Tue Oct 22 10:10:04 2013 +0200 Added some tests for our CellMLTools plugin. commit 09450b70b03763c4d46a252d8e91b5534d0cefa1 Author: Alan Garny Date: Mon Oct 21 20:09:03 2013 +0200 Fixed the issue with Travis CI. commit 07326f68b9a8706b3ada336cd48c1f84694421e7 Author: Alan Garny Date: Mon Oct 21 20:06:25 2013 +0200 Some minor cleaning up [ci skip]. commit 25fb4a3afd2ff37bc2a05d643af2c07cb7a0ea2a Author: Alan Garny Date: Mon Oct 21 19:32:13 2013 +0200 Fixed a problem with running tests on Travis CI (?). commit e3734e0bafd13e21bf65e62675c5a0319590ace8 Author: Alan Garny Date: Mon Oct 21 19:21:54 2013 +0200 Added some tests for our CellMLTools plugin. commit b20183c7c67f0e7a48b854874de28ca704204547 Author: Alan Garny Date: Mon Oct 21 16:04:56 2013 +0200 Improved our maketests scripts. commit 7d470f3988d2785941e3dc7e94f33184dc3533ed Author: Alan Garny Date: Mon Oct 21 15:36:56 2013 +0200 Fixed a small issue with our CellMLTools tests on Windows. commit da6adb4fb363c853dfb344ef8fb9d7b7156ce772 Author: Alan Garny Date: Mon Oct 21 12:29:11 2013 +0200 Created a skeleton for some CellMLTools tests. commit b981e2d8bbe5a967911db924595c234c66a83acc Author: Alan Garny Date: Sun Oct 20 18:49:48 2013 +0200 Some minor work for building our tests. commit e4c5e87f4e0b0f364510c9727ef41313475cfe05 Author: Alan Garny Date: Sun Oct 20 18:44:10 2013 +0200 Some minor work for building our tests. commit 2f52b512d544ce6a7cc0c1a2f16731fb34ddc111 Author: Alan Garny Date: Sun Oct 20 18:33:26 2013 +0200 Some minor work for building our tests. commit 7e23db45be98e35619b78e8843697a29d086d7b6 Author: Alan Garny Date: Sun Oct 20 18:25:30 2013 +0200 Some minor work for building our tests. commit 97a828433f560aa233b8523b5bb3108291c434fb Author: Alan Garny Date: Sun Oct 20 18:04:54 2013 +0200 Some minor work for building our tests. commit 12141d4f94b8b04cef35356bb3d5662640a0b629 Author: Alan Garny Date: Sun Oct 20 16:04:54 2013 +0200 Cleaned up some code for the generation of our tests. commit 6e97f6122cb33b6fc487fcaefc61a0a77d6393b2 Author: Alan Garny Date: Sun Oct 20 15:09:52 2013 +0200 Some minor cleaning up. commit e6c3517c90323cb12af78a1d18e5a1200fd337ad Author: Alan Garny Date: Sun Oct 20 14:57:40 2013 +0200 Some minor cleaning up. commit 36804fcd9a86f0ec6af422463e53be78b1d06050 Author: Alan Garny Date: Sun Oct 20 14:45:25 2013 +0200 Oops, renamed a couple of functions which shouldn'\''t have been renamed! commit 1c75e4017fae8bd42595637fcfdafaa433747fa7 Author: Alan Garny Date: Sun Oct 20 14:39:02 2013 +0200 Slight refactoring of our tests framework. commit 8151dd4db783ae9dfed4f0420ad74555e5d34584 Author: Alan Garny Date: Sun Oct 20 13:49:42 2013 +0200 Some minor cleaning up [ci skip]. commit 96a6251365a781cd972f58bd7eb90f831f08ed40 Author: Alan Garny Date: Sun Oct 20 13:21:35 2013 +0200 Slight improvement to our .travis.yml file. commit e1ff41e1f82a34de080d2ae17826fb3c091fb4fc Author: Alan Garny Date: Sun Oct 20 13:06:12 2013 +0200 Slight update to our .travis.yml file [ci skip]. commit 3b12443888bc2887e0a294f83252a57bfa05d29b Author: Alan Garny Date: Sun Oct 20 12:54:15 2013 +0200 Some minor cleaning up. commit 696c21053bedd2c8c58248a6dbe2c0366af07447 Author: Alan Garny Date: Sun Oct 20 12:37:01 2013 +0200 Some major refactoring for our plugin interfaces to ensure that a plugin cannot overlook one or several interfaces by mistake. commit dcda23c31fae7f8c333df86f9562122a80eca4c1 Author: Alan Garny Date: Sat Oct 19 09:39:43 2013 +0200 Some minor updates to our documentation [ci skip]. commit 42d4edcb6b15cd6eff2eda9dfdc7f559c47a44a6 Author: Alan Garny Date: Fri Oct 18 17:59:15 2013 +0200 Some minor refactoring. commit 3defdd6caada508863ffa10c44f53083e0c0a3e5 Author: Alan Garny Date: Fri Oct 18 16:29:11 2013 +0200 Some minor refactoring. commit 02706f9d26f394aa2609c710176303f276a92b2c Author: Alan Garny Date: Fri Oct 18 15:47:09 2013 +0200 Some minor refactoring. commit 4860db0c5889fbbace9c82519e9fc7e562420c4e Author: Alan Garny Date: Fri Oct 18 14:33:45 2013 +0200 Some updates to our documentation [ci skip]. commit 3c86e4293c9ce22278309366066bfa4ce38e23d5 Author: Alan Garny Date: Fri Oct 18 11:49:57 2013 +0200 Some minor cleaning up. commit f7417c4bff9b9eedf21c5e47d83509fbc503d335 Author: Alan Garny Date: Thu Oct 17 17:43:57 2013 +0200 Slight update to our developer documentation [ci skip]. commit a895e1c8ffb6ed64ad953a5cad2b5723ab8662c4 Author: Alan Garny Date: Thu Oct 17 17:30:06 2013 +0200 Slight update to our developer documentation [ci skip]. commit 9f7c6f27afda0d0401eddc1bf693053adeb3ce12 Author: Alan Garny Date: Thu Oct 17 17:16:06 2013 +0200 Now have an optimal Travis CI script. commit a25416c409fa34b59abb87dc417a85632807032f Author: Alan Garny Date: Thu Oct 17 17:14:43 2013 +0200 Slight update to our README.md file [ci skip]. commit 41824967c5e31cbbac8b3953a009ca43530a9537 Author: Alan Garny Date: Thu Oct 17 17:13:17 2013 +0200 Slight update to our README.md file [ci skip]. commit 0d6af6eb3a95417f3f614abbd00e523ce6f3432a Author: Alan Garny Date: Thu Oct 17 17:11:01 2013 +0200 Added a README.md file so that GitHub visitors can see the contents of our homepage [ci skip]. commit 3a39229c01018729218a42559f79b208b5727371 Author: Alan Garny Date: Thu Oct 17 17:07:28 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit d31be07cf0bb69cc2e8237e9a7b335e4c93905c7 Author: Alan Garny Date: Thu Oct 17 16:56:54 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit 16d0b1181e821f3c4b47ae643674254e9d6b493c Author: Alan Garny Date: Thu Oct 17 16:50:08 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit 38349b6e90b2c08890cfd32d08db4ec1c665e1bb Author: Alan Garny Date: Thu Oct 17 16:33:24 2013 +0200 Some tests to reduce our Travis CI script. commit bf3511d7263a6c95f291c9d278c2f602a42d2c89 Author: Alan Garny Date: Thu Oct 17 16:22:15 2013 +0200 Removed a test in our Compiler plugin (use of definite integrals are not tested in that plugin anymore). commit 9edccf7cfe420e062cdd07760954a6527e64fc5b Author: Alan Garny Date: Thu Oct 17 16:10:00 2013 +0200 Some work on our Travis CI script. Everything now builds and runs fine on Travis CI, so try to see what we can get rid of in our .travis.yml script. commit fa01f6526a592303f68e7a2f9f33759465be2982 Author: Alan Garny Date: Thu Oct 17 16:01:59 2013 +0200 Some work on our Travis CI script. Now, the build time is optimal, so now try to get our tests to run properly. commit fdbd203de3d34f0328a865be1d284d0f7c546b39 Author: Alan Garny Date: Thu Oct 17 15:54:47 2013 +0200 Some work on our Travis CI script. Allow a build with n parallel jobs, with n the number processors on the Travis CI server. commit cbfe1685f23010746bae38bdce5613fdfab84980 Author: Alan Garny Date: Thu Oct 17 15:41:18 2013 +0200 Some work on our Travis CI script. Increased the number of jobs since the build now goes through with 4 parallel jobs. Also some minor cleaning up. commit caa81b9881af43421f67a2595bdef30137f07d62 Author: Alan Garny Date: Thu Oct 17 15:25:07 2013 +0200 Some work on our Travis CI script. Removed Clang as one of the compilers since our binaries for the CellML API and LLVM were built using gcc, which means that we cannot build OpenCOR with Clang on Ubuntu. Also limited the number of parallel jobs for the compilation. We used to have no limit and this would eventually crash the build. Oops! commit 678a1ba74b48e33dad0f749c265325bde2d8c41a Author: Alan Garny Date: Thu Oct 17 15:13:40 2013 +0200 Some work on our Travis CI script. commit 69bc031aa978571ef2bad528bc0d8c5744bcd752 Author: Alan Garny Date: Thu Oct 17 15:06:58 2013 +0200 Some work on our Travis CI script. commit d97a3ad1f269d66a6eee72f1156261f9d66332b0 Author: Alan Garny Date: Thu Oct 17 14:19:35 2013 +0200 Some work on our Travis CI script. commit e65d383ad28e6161c5d98c9c9dfb538bb265b2d7 Author: Alan Garny Date: Thu Oct 17 14:12:59 2013 +0200 Some work on our Travis CI script. commit 1a78c75ea5dfbb54805c23b12035987c28f41424 Author: Alan Garny Date: Thu Oct 17 13:45:23 2013 +0200 Some work on our Travis CI script. The Travis CI server seems to be configured in such a way that we can install neither ia32-libs nor ia32-libs-multiarch (to be able to run 32-bit applications on a 64-bit system). So, we are going back to building CMake ourselves... commit 48703554dd79ee223bf0e660ca4a6589bac82dab Author: Alan Garny Date: Thu Oct 17 13:41:05 2013 +0200 Some work on our Travis CI script. commit 432fbcab378fc381e6f76ce422a88e3966afaab3 Author: Alan Garny Date: Thu Oct 17 13:39:48 2013 +0200 Some work on our Travis CI script. commit 6c85798969c0c8d8af8215b0bc37cc87b44b1fe1 Author: Alan Garny Date: Thu Oct 17 13:24:55 2013 +0200 Some work on our Travis CI script. commit 359ca7573f2f6ab082c34cffbe24fa4a9bdea122 Author: Alan Garny Date: Thu Oct 17 13:17:47 2013 +0200 Some work on our Travis CI script. commit 42a459959f812ddb6243b7bd9588272f41d80b2e Author: Alan Garny Date: Thu Oct 17 13:06:13 2013 +0200 Some work on our Travis CI script. commit 11fcc938deb7044559f8c45c7ba720ca0b598466 Author: Alan Garny Date: Thu Oct 17 13:04:58 2013 +0200 Some work on our Travis CI script. We don'\''t build CMake ourselves (it takes too long and generates too many log entries). Instead, we get the 32-bit binaries and install ia32-libs so that we can run the 32-bit version of CMake on the Travis CI'\''s 64-bit server. Also added qt51svg to our list of Qt dependencies. commit 81c37012429d240217b156022e41ddab8ed988d9 Author: Alan Garny Date: Thu Oct 17 12:49:27 2013 +0200 Some work on our Travis CI script. commit c38ab65133f67336bedf27cdf22348e6886246e3 Author: Alan Garny Date: Thu Oct 17 12:46:33 2013 +0200 Some work on our Travis CI script. commit b7ce9b5490146652604da84ab13bc4b92e101410 Author: Alan Garny Date: Thu Oct 17 12:28:17 2013 +0200 Some work on our Travis CI script. commit cc99d58d7c89921a9f18c787a06d9a29d18e6039 Author: Alan Garny Date: Thu Oct 17 12:16:33 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. We were trying to use a 32-bit version of CMake while the build machines at Travis CI run the 64-bit version of Ubuntu 12.04 LTS. So, now, we build and install our own version of CMake… commit 7a7327d71e85bf013946db2e06e068a2f9a97053 Author: Alan Garny Date: Thu Oct 17 11:56:31 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit 2adedd6f1002012b6cf03e71901b34aedb6ed98d Author: Alan Garny Date: Thu Oct 17 11:38:57 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit c3469d1b67557b7243f5241c66583fb299fc43a4 Author: Alan Garny Date: Thu Oct 17 11:35:13 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit fb59818f0d18065fb499e2f78894a4dcab465a7c Author: Alan Garny Date: Thu Oct 17 11:32:46 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit f1fbec292c054388e28d3c08f0dd120f8fdc0f1f Author: Alan Garny Date: Thu Oct 17 10:27:22 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit 172150fb0d072328abb02b2fce9c292da257bc2e Author: Alan Garny Date: Thu Oct 17 10:22:10 2013 +0200 Some improvements to our .travis.yml file though it should still fail due to Qt5 not being fully setup. commit f3b9a4aaf791e277d1594c89236351b08118c997 Author: Alan Garny Date: Thu Oct 17 02:26:02 2013 +0200 Minor updates to the developer documentation [ci skip]. commit bb21c4862af27786d4ecc51a921ff830b893cad5 Author: Alan Garny Date: Thu Oct 17 02:20:38 2013 +0200 Minor updates to the developer documentation [ci skip]. commit 112c7621fc37c80539b9e3bba39cfada74d231a8 Author: Alan Garny Date: Thu Oct 17 02:18:25 2013 +0200 Minor updates to the developer documentation [ci skip]. commit 8dfac7c2b0d05b5d2450d6008d998e1ddb93591d Author: Alan Garny Date: Wed Oct 16 20:51:46 2013 +0200 Some minor cleaning up [ci skip]. commit 34506e942b0f1a5bd7017d77d8d734ae8c8fea86 Author: Alan Garny Date: Wed Oct 16 20:15:44 2013 +0200 Ask for CMake 2.8.12 to be used with Travis CI. commit 86c08d4e0ebc2748dc6fe11aa1f17e16e6e757c8 Author: Alan Garny Date: Wed Oct 16 20:01:24 2013 +0200 Added our initial .travis.yml file. commit 0b3be6058a94b20d2f27f70234b3bfb896fcac1d Author: Alan Garny Date: Wed Oct 16 17:52:45 2013 +0200 Some minor cleaning up. commit 9212b8e542c50c44a937213f37c9a0aa1be51fdf Author: Alan Garny Date: Wed Oct 16 17:48:04 2013 +0200 Some minor refactoring. Basically removed our Interface class. commit 855410682de4ab83a490426c4b322f213ff8d11a Author: Alan Garny Date: Wed Oct 16 16:01:09 2013 +0200 SingleCellView plugin: handle the case when a file is being closed. commit 84083f9487a932f6e100d0ba7ad3b0f7ff8576fc Author: Alan Garny Date: Wed Oct 16 15:21:47 2013 +0200 Some minor cleaning up. commit 6c906fb1a66093d188313acae1225338da1072de Author: Alan Garny Date: Wed Oct 16 14:48:26 2013 +0200 Some minor cleaning up. commit 414fec7382b84ddd6f263c7d3caa5ab553935f1c Author: Alan Garny Date: Wed Oct 16 14:42:11 2013 +0200 Addressed an issue with PMR2'\''s certificate having expired. We should obviously get the PMR2 guys to update their certificate, but still we don'\''t want our users to '\''suffer'\'' from it in the future, so… commit a829eb31cb9270e6e2ffe79899437ff952778e81 Author: Alan Garny Date: Wed Oct 16 14:05:09 2013 +0200 Some minor cleaning up. commit 71cdd324690a3c035426a502afaec32e04958cfc Author: Alan Garny Date: Wed Oct 16 12:38:43 2013 +0200 Minor update to the developer documentation. commit 15ba84dce9ea78fea06f9d0d532b6dcf3e619cbd Author: Alan Garny Date: Wed Oct 16 10:43:51 2013 +0200 Some minor cleaning up. xcodebuild used to always generate an error message, even though everything was fine. However, now, there is no such message anymore (!?), so… commit 4c9b029394a20272a92e49a446f34070a3e5598b Author: Alan Garny Date: Tue Oct 15 17:51:22 2013 +0200 Some minor cleaning up. commit dce3d0fba25de9fbf0fc0bfd07ce182377bc8c6a Author: Alan Garny Date: Tue Oct 15 17:22:19 2013 +0200 Re-enabled some plugins now that we have created a branch for v0.2. commit cb3e70c24c8836414559ad85e57b0aa579decf81 Author: Alan Garny Date: Tue Oct 15 15:48:50 2013 +0200 New snapshots. commit cc63af66a5ec0687aa9145f993b7e385fe8f98e9 Author: Alan Garny Date: Tue Oct 15 15:40:59 2013 +0200 Fixed a typo. commit 92076f464e9ee302a6d103c771b08cd6400e3ec0 Author: Alan Garny Date: Tue Oct 15 15:31:49 2013 +0200 Fixed an issue with the plotting of some imported variables (closes #231). The fix has resulted in us displaying model parameters by respecting the encapsulation information. In the end, it'\''s better that way, so it'\''s all good! commit 563f6dc77631404d4ec9cf82d160250927009d11 Author: Alan Garny Date: Mon Oct 14 14:16:16 2013 +0200 New snapshots. commit 81136cd717832aeaaa7e7f65bf943261fa055389 Author: Alan Garny Date: Mon Oct 14 14:05:32 2013 +0200 Some work on our graph panel plot widget. commit 324d8c9ce1159e3d348285cbde8fa5bef7fa118e Author: Alan Garny Date: Mon Oct 14 14:00:24 2013 +0200 Some minor cleaning up. commit f92448ba5d4ec0b37b3ce4db03fd75a45e635aca Author: Alan Garny Date: Mon Oct 14 13:58:51 2013 +0200 Some minor cleaning up. commit 042ef8f7c88d5110c2a5fb504808a90269906e82 Author: Alan Garny Date: Mon Oct 14 13:30:15 2013 +0200 Some work on our graph panel plot widget. commit 080f8188b9d7d382faeab039a1eb5c92647794fc Author: Alan Garny Date: Mon Oct 14 12:42:42 2013 +0200 Some work on our graph panel plot widget. commit 540ed0c543aac82e9c7b6a3221d17d7da80a8b38 Author: Alan Garny Date: Mon Oct 14 12:08:12 2013 +0200 Some work on our graph panel plot widget. commit d6457ec0fdd90453aadeb26e3311c966e024f80b Author: Alan Garny Date: Mon Oct 14 11:16:51 2013 +0200 Some work on our graph panel plot widget. commit 28984e4c532859606f0ae2eee911cb30cb6a6280 Author: Alan Garny Date: Sun Oct 13 09:47:35 2013 +0200 Slight updates to the user documentation. commit 8b3444ce9b73b730794ad40f807f828d968a0f5a Author: Alan Garny Date: Sat Oct 12 09:55:28 2013 +0200 Slight update to the user documentation. commit 690d8f75c4a512d2e56fa4ec21159896fd833559 Author: Alan Garny Date: Fri Oct 11 13:05:02 2013 +0200 Some minor cleaning up. commit dc7d7bee589e0d3f2ba8be4a50c149af30829d80 Author: Alan Garny Date: Fri Oct 11 09:14:13 2013 +0200 Some minor updates to the documentation. commit 525769805b2aeb7043b17726bcd6620bd7719d74 Author: Alan Garny Date: Thu Oct 10 18:16:39 2013 +0200 Very slight speedup in the plotting of data during a simulation. commit e727f37482c4ab920a7bd3136e5c06e07614f7b0 Author: Alan Garny Date: Thu Oct 10 16:59:20 2013 +0200 Fixed an issue with quitting OpenCOR while a simulation is still running. This didn'\''t use to cause problems, but I guess we had just been lucky until now, i.e. that nothing was taking long enough for SingleCellViewWidget::checkResults() to fail. commit 800a4d32ad42c59de0d9e92cfb8394eb23f5eaec Author: Alan Garny Date: Thu Oct 10 16:42:10 2013 +0200 Some minor cleaning up. commit f84d4504817e08a55c5ad48d74ac2c0a050b0801 Author: Alan Garny Date: Thu Oct 10 16:39:36 2013 +0200 Some work on our graph panel plot widget. commit 3150c63d7e26456a1e022f712fbe2cb6fe2c65af Author: Alan Garny Date: Thu Oct 10 16:10:37 2013 +0200 Some minor cleaning up. commit 0562f83ad77d47bac628fc7d6abe1ee4684195a5 Author: Alan Garny Date: Thu Oct 10 15:50:12 2013 +0200 Some work on our graph panel plot widget. commit 23d4b696d347f64a89b22b5db06a9ec4e2a9130a Author: Alan Garny Date: Thu Oct 10 15:44:21 2013 +0200 Keep track of which graphs are selected when switching from one file to another in the simulation view plugin. commit 0d522596348bdb1405ec9feb0a1137a7e87fcac8 Author: Alan Garny Date: Thu Oct 10 15:38:56 2013 +0200 Keep track of which graphs are selected when switching from one file to another in the simulation view plugin. Also some minor cleaning up. commit 37336d03c9a501575622ebccf09e948c915718e4 Author: Alan Garny Date: Thu Oct 10 15:04:19 2013 +0200 Some work on our graph panel plot widget. commit 80fdf0a5c6b3cd4260ba8fb2edeede54336f0104 Author: Alan Garny Date: Thu Oct 10 14:08:54 2013 +0200 Some minor cleaning up and refactoring. commit 4718523e47a77a37966e782b2c52b8440049d528 Author: Alan Garny Date: Thu Oct 10 13:34:09 2013 +0200 Some work on our graph panel plot widget. Also some minor cleaning up. commit 10886d1903012607abfe4f8d1252844399263385 Author: Alan Garny Date: Thu Oct 10 13:22:40 2013 +0200 Some minor cleaning up. commit 582e21e3975a212487c85b96b1217352e7e14e92 Author: Alan Garny Date: Thu Oct 10 13:12:47 2013 +0200 Some minor cleaning up and refactoring. commit 1bb71154e7cb3c2d61629d8396ceb4ef988a3d0a Author: Alan Garny Date: Thu Oct 10 12:13:24 2013 +0200 Some minor cleaning up. commit 144c9f32dba60b9334c878af73c112d7e619417c Author: Alan Garny Date: Thu Oct 10 11:39:40 2013 +0200 Improved the resetting of the zoom level in our graph panel plot widget. commit 7201883c6e15a01cad647197a2a80df24207624b Author: Alan Garny Date: Thu Oct 10 11:14:18 2013 +0200 Keep track of the active graph panel when switching files in the simulation view plugin. commit b0f41fac61645fa5451052b0df94aa83650a95ac Author: Alan Garny Date: Thu Oct 10 10:53:07 2013 +0200 Some minor cleaning up. commit 65e33e56c2733b6a4f3b8835cef8ec7f7e555757 Author: Alan Garny Date: Wed Oct 9 19:24:32 2013 +0200 Some work on our graph panel plot widget. commit 6edf8f044f108a072582b42b223a4999c591a2e0 Author: Alan Garny Date: Wed Oct 9 18:02:52 2013 +0200 Some work on our graph panel plot widget. commit 6c93e820adb2538ec1c384c7fb54f9c1921272f0 Author: Alan Garny Date: Wed Oct 9 17:15:47 2013 +0200 Some work on our graph panel plot widget. commit 0efa99329858ebcf261b404175158f53fe480644 Author: Alan Garny Date: Wed Oct 9 16:52:38 2013 +0200 Some work on our graph panel plot widget. commit 2f0863d9f2a230c49fc5c41d2ea8f85fa2b1366f Author: Alan Garny Date: Wed Oct 9 16:04:05 2013 +0200 Some work on our graph panel plot widget. commit 9d3a2e1eca69b4918b0615a8ea191873e8f60d9f Author: Alan Garny Date: Wed Oct 9 15:20:24 2013 +0200 Some work on our graph panel plot widget. commit 64bfcb35783dbcaa62dd3ec073aea37297f38afc Author: Alan Garny Date: Wed Oct 9 14:52:32 2013 +0200 Some minor cleaning up. commit ca0b0c65bbbcbf7fd56cac1c44ce4b84ff4fa8d5 Author: Alan Garny Date: Wed Oct 9 14:44:23 2013 +0200 Some minor refactoring. commit 587b32858d943aa618cc1d0f6d439d846ce75eae Author: Alan Garny Date: Wed Oct 9 14:01:43 2013 +0200 Some work on our graph panel plot widget. commit 0423ac798ffca3620e56ca771dd8d142b9e3d7f7 Author: Alan Garny Date: Wed Oct 9 13:37:53 2013 +0200 Some work on our graph panel plot widget. commit f328dd9ff8b2137951cf06e777bfca754838bc5e Author: Alan Garny Date: Wed Oct 9 12:39:59 2013 +0200 Some work on our graph panel plot widget. (92ec1d6) commit 92ec1d6b9c18f8307dfe28ebb7bf2318a8a15513 Author: Alan Garny Date: Wed Oct 9 12:10:32 2013 +0200 Some work on our graph panel plot widget. commit 5edd833e1d6b79d75a9b2235df5c5f46de45e049 Author: Alan Garny Date: Wed Oct 9 12:00:14 2013 +0200 Can now reset the zoom level in a graph panel plot widget. commit a552f0fc4da943122fb3f2e272a10a4f1f77956e Author: Alan Garny Date: Wed Oct 9 11:15:05 2013 +0200 Some minor cleaning up. commit 16ab9802300034f482b7f6852bc3b520d71fb4de Author: Alan Garny Date: Wed Oct 9 11:04:52 2013 +0200 Some minor refactoring. commit e2f7a82288cc55528b903d041b71a9a5ffc0401c Author: Alan Garny Date: Wed Oct 9 10:50:04 2013 +0200 Some minor cleaning up. commit fff37fbc91ca716fab76c16ff427fce0b8ac0603 Author: Alan Garny Date: Wed Oct 9 10:45:10 2013 +0200 Some work on our graph panel plot widget. commit 98d04b098dc21eead7a6637089e10540056e8b6d Author: Alan Garny Date: Tue Oct 8 18:48:15 2013 +0200 Minor comment. commit ea904de19b9d775b30631d4fe9b200db3ff101c8 Author: Alan Garny Date: Tue Oct 8 18:09:21 2013 +0200 Fixed a minor issue with zooming a region. commit f37be6f031eb82923e2929b09da356bbf9495127 Author: Alan Garny Date: Tue Oct 8 17:45:05 2013 +0200 Some minor refactoring. commit 448d92c5cb25c4c4e9c8796c7c8d244b92cb5ca2 Author: Alan Garny Date: Tue Oct 8 16:21:07 2013 +0200 Some minor cleaning up. commit c894c088691003ed6996ec078531f5e45de36b5a Author: Alan Garny Date: Tue Oct 8 15:55:58 2013 +0200 Some work on zomming in/out around the mouse position in our graph panel plot widget (#241). commit 4515c2dcf795946957d84f5ca262f48c03fc18d7 Author: Alan Garny Date: Tue Oct 8 13:49:22 2013 +0200 Some minor cleaning up. commit 888ef723d78871a7603142cb5ac62a32062e403b Author: Alan Garny Date: Tue Oct 8 13:42:20 2013 +0200 Some minor cleaning up. commit d2c02374fd53b0704d33b6486c2dfc02198832b2 Author: Alan Garny Date: Tue Oct 8 13:27:35 2013 +0200 Some work on our graph panel plot widget. commit 6b3df49235b8bd367432714f0870581462e7915f Author: Alan Garny Date: Tue Oct 8 10:12:57 2013 +0200 Some work on our graph panel plot widget. commit 99ede9263add8e72d0eadbc13896643c486c7632 Author: Alan Garny Date: Tue Oct 8 09:20:55 2013 +0200 Some minor cleaning up. commit a477821401619716364873b34706ed7a4c9af0c0 Author: Alan Garny Date: Mon Oct 7 18:47:44 2013 +0200 Fixed a previous commit. commit 5e1e904f87a00109d363bdb4351564e551ec94d1 Author: Alan Garny Date: Mon Oct 7 18:26:06 2013 +0200 Some minor cleaning up. commit b481f20378bb8a61b71d7e6db41a43360dd9c61e Author: Alan Garny Date: Mon Oct 7 18:12:45 2013 +0200 Some cleaning up and refactoring. commit 71bd691b8dceadf06345a3808780eebcc5a5f7eb Author: Alan Garny Date: Mon Oct 7 15:45:48 2013 +0200 Some minor cleaning up and refactoring. commit d1477da29518cb645951a4397cd2f650d4c0d0af Author: Alan Garny Date: Sun Oct 6 15:21:50 2013 +0200 Minor fix to our graph panel plot widget. commit 66f56d256063a2ce778e22013f8fb68749cc1d2d Author: Alan Garny Date: Sun Oct 6 12:43:35 2013 +0200 Improved the accuracy of our graph panel when showing coordinates and zooming a region. Indeed, before, there could be cases where moving the mouse by one pixel wouldn'\''t move the crossing lines for showing the coordinates (however, the label for the coordinates would still get updated, as expected). This was due to rounding issues following some mapping/unmapping. Otherwise, also addressed a small issue related to the fact that we now use QRect rather than QRectF in some cases, and that for historical reasons some of its methods (e.g. bottom(), right() and bottomRight()) don'\''t behave the same way as its QRectF counterparts. commit 3e9205182817e25ef9aab9a533658ecd7500c6d7 Author: Alan Garny Date: Sat Oct 5 18:45:10 2013 +0200 Disabled some plugins for version 0.2 of OpenCOR. commit ed67acd560129f250194bd9ea73bfeaef0921301 Author: Alan Garny Date: Sat Oct 5 18:22:15 2013 +0200 Some minor improvements to the displaying of coordinates in our graph panel. commit 47d7dafb7695ab15bef0cae0245aafad1cc30bfa Author: Alan Garny Date: Sat Oct 5 17:36:45 2013 +0200 Fixed a typo. commit 486a05050b5a9c57381086cc29551e18edeaa5c9 Author: Alan Garny Date: Sat Oct 5 15:27:09 2013 +0200 Finally managed to fix an issue with the displaying of coordinates in our graph panel. commit cb2c993fb5870390082092f530442d2ece94b106 Author: Alan Garny Date: Sat Oct 5 10:06:02 2013 +0200 Some minor cleaning up. commit 0e254ab1d47dbea34ca2e68f094cecb3d83fa959 Author: Alan Garny Date: Fri Oct 4 16:35:08 2013 +0200 Some minor cleaning up. (4b4b259) commit 4b4b2598f87b0c29857987fac2a1e361d63b5f85 Author: Alan Garny Date: Fri Oct 4 16:17:18 2013 +0200 Some minor cleaning up. commit 9b59930b4dc2f82814f3e219866408fdc0e7be18 Author: Alan Garny Date: Fri Oct 4 16:07:50 2013 +0200 Some minor cleaning up. commit da39c7e1184e42cafd5f73e7bc0f75e04d20dea0 Author: Alan Garny Date: Fri Oct 4 13:27:01 2013 +0200 Some minor cleaning up. commit fb8bfd34e8ba7b5e89add00580dd33f33d751333 Author: Alan Garny Date: Fri Oct 4 11:14:47 2013 +0200 Some work towards zooming out more (#240). commit 870b3311a1081fc5fb06ee379b648d6ff866b016 Author: Alan Garny Date: Fri Oct 4 11:02:45 2013 +0200 Some work towards zooming out more (#240). commit 5ccd7a2109cdd766b929b870012e35c005e6ed1d Author: Alan Garny Date: Thu Oct 3 18:55:12 2013 +0200 Some minor cleaning up. commit 8b59570fc7862d32e593752bc05568b14e97e542 Author: Alan Garny Date: Thu Oct 3 18:17:06 2013 +0200 Minor improvement to the formatting of coordinates in our graph panel. commit 2fabe789bacde23830661aa3c879ed03ac946fc1 Author: Alan Garny Date: Thu Oct 3 17:19:09 2013 +0200 Some work towards zooming out more (#240). commit 7447738025cc3c932f06ded45bae9cab2c0523fc Author: Alan Garny Date: Thu Oct 3 15:39:48 2013 +0200 Some minor cleaning up. commit b62bd3f68d8741b51b50bd74e649666986ed1797 Author: Alan Garny Date: Thu Oct 3 15:26:30 2013 +0200 Fixed a small problem with our graph panel. commit 5a491048bf714b414e0c3cd8b1d616add9f059cd Author: Alan Garny Date: Thu Oct 3 12:15:00 2013 +0200 Improved the zooming in of data by making axes'\'' labels more accurate. commit 8a8d11cbc94789828ebafb6a142d6d26693ea3c5 Author: Alan Garny Date: Thu Oct 3 09:07:04 2013 +0200 Minor update to QtSingleApplication. commit 2ad6bde8533be25fe486b6fce79ed0a197b7a4f2 Author: Alan Garny Date: Wed Oct 2 18:40:37 2013 +0200 Fixes an issue with unique constant graphs (closes #243). commit 5cb746e36a7f580f647b0b2b1bf16b74a428fd0f Author: Alan Garny Date: Wed Oct 2 17:59:08 2013 +0200 Improved the speed of switching files when having many selected graphs with many data points. commit 70313e8f86a56a2fec8fb57b76843483f2902877 Author: Alan Garny Date: Wed Oct 2 17:50:06 2013 +0200 Minor fix. commit bb0b55455bfdb85cef88d2fa357f944ec77a7404 Author: Alan Garny Date: Wed Oct 2 13:32:05 2013 +0200 Various improvements to the (un)selection/removal of graphs in our SingleCellView plugin. commit 88ec644ee3881824917b5b8531b67012c1c3c194 Author: Alan Garny Date: Wed Oct 2 09:47:32 2013 +0200 Minor update to our developer documentation. commit 139a18309662c01c7ccb354215004e8af139ea91 Author: Alan Garny Date: Tue Oct 1 16:56:06 2013 +0200 Some minor cleaning up. commit f68f45b70b1d227d06fc17127d61288cc74a60fe Author: Alan Garny Date: Tue Oct 1 16:35:53 2013 +0200 Some minor cleaning up. commit 3d5d4a18770f66dc1e184c8fd912f97569f0ae63 Author: Alan Garny Date: Tue Oct 1 16:20:11 2013 +0200 Made double clicking on a graph panel'\''s plot reset the zoom level rather than copy its contents to the clipboard (which can still be done through the context menu). commit 14eb38f78588f249db44b9cc2fea0555269003e0 Author: Alan Garny Date: Tue Oct 1 15:57:44 2013 +0200 Optimised our graph panel'\''s plot'\''s axes. commit 7c41d025ee02d2872cd9b7c34e4894491d375f49 Author: Alan Garny Date: Tue Oct 1 15:29:56 2013 +0200 Optimised our graph panel'\''s plot'\''s axes. commit be1a47214bd48b5c3d33575b2d8acd7047fbfe2a Author: Alan Garny Date: Mon Sep 30 10:55:16 2013 +0200 Some minor cleaning up. commit f2f31a64dcab404a3defd2886527d5163087b2a3 Author: Alan Garny Date: Mon Sep 30 10:52:45 2013 +0200 Some work on our graph panel plot widget. commit 1fc9dcd6bce88abec79d4d8e73f293a2447279fb Author: Alan Garny Date: Sun Sep 29 17:54:39 2013 +0200 New snapshots. commit acb2fa517bec95ceed55c4e331a0828de5fe19c6 Author: Alan Garny Date: Sun Sep 29 16:44:38 2013 +0200 Don'\''t make rows'\'' height uniform in TreeViewWidget. Indeed, this was causing problems with PropertyEditorWidget on Windows XP (both the top and the bottom of the icon of model parameters in the SingleCellView plugin were chopped off). commit a3f9448df94b54d4e4e17bbcaebfc6c145d43ef3 Author: Alan Garny Date: Sun Sep 29 14:56:54 2013 +0200 Some minor cleaning up. commit 86bd7d277d6948679c0db81795e827454573fabe Author: Alan Garny Date: Sun Sep 29 14:35:25 2013 +0200 Some minor cleaning up. commit 4a923235dc7e51e10a502a3f2f320c28f966a32d Author: Alan Garny Date: Sun Sep 29 14:04:56 2013 +0200 Some minor cleaning up. commit 6d35011ef7dfd1d8f71d107174ff9c30d8e854db Author: Alan Garny Date: Sun Sep 29 13:28:18 2013 +0200 Some minor cleaning up. commit 5edbd2b9bedd1d5a704eafc6e86eadab36593519 Author: Alan Garny Date: Sun Sep 29 02:24:04 2013 +0200 Worked around a very puzzling issue with Qt 5.1.1 (?) (closes #229). commit 11f0ac53ec749b29a34fed91dc6a79561726e98d Author: Alan Garny Date: Sun Sep 29 01:53:39 2013 +0200 Some minor cleaning up. commit 55751742e4c9d1d3d712307ef65ff4f7fdecccd0 Author: Alan Garny Date: Sat Sep 28 16:42:02 2013 +0200 Some minor cleaning up. commit b7a7f4217ff6c50865eb1b8bad77d55fc1f2d3be Author: Alan Garny Date: Sat Sep 28 16:21:37 2013 +0200 Some minor cleaning up. commit d39a28848742b2da35e666e12b58f61c9c811cbe Author: Alan Garny Date: Sat Sep 28 15:19:09 2013 +0200 Some minor cleaning up. commit 0c47eeb4d0c12a0362bb28c56fb175eeacf6f599 Author: Alan Garny Date: Sat Sep 28 10:14:35 2013 +0200 Some minor cleaning up. commit c882e423be737fe82ec24bb26201b7f8e4c59b6c Author: Alan Garny Date: Sat Sep 28 09:56:23 2013 +0200 Some minor cleaning up. commit cffa6681ed414ad506fcd5102df7b3a76e932761 Author: Alan Garny Date: Sat Sep 28 09:48:39 2013 +0200 Slight modifications to our make.bat and maketests.bat files to make them generate NMake Makefiles (as opposed to JOM ones). Indeed, ideally, we would generate JOM Makefiles, but even though Qt Creator uses JOM to effectively build OpenCOR, it still generates NMake Makefiles (after all, NMake and JOM Makefiles are the same). So, now we can build OpenCOR from the command line and then switch to Qt Creator without first having to make clean everything. commit 345cdc9f5142cf67a65ab08d525c7fe2b16a14f5 Author: Alan Garny Date: Sat Sep 28 09:34:30 2013 +0200 Some minor cleaning up. commit 009f93646f2d896e229033ebdcd719d6c785dcf8 Author: Alan Garny Date: Sat Sep 28 09:26:58 2013 +0200 Some minor cleaning up. commit 4dabf32fb3bce7b94f2d20a070b3013a1042b47f Author: Alan Garny Date: Fri Sep 27 15:58:43 2013 +0200 Slight improvements to the way we build OpenCOR on OS X. commit 6ee118c5a72655a347175036347ecae56865dd21 Author: Alan Garny Date: Fri Sep 27 15:47:14 2013 +0200 Some minor cleaning up of our compiler engine code. commit a6e40daf6548475190c5864a97d4559e1ddff934 Author: Alan Garny Date: Fri Sep 27 15:41:44 2013 +0200 Some minor cleaning up of our compiler engine code. commit 8c8b6defc36026fbe9d462452e098a745dec06c3 Author: Alan Garny Date: Fri Sep 27 15:18:02 2013 +0200 Some minor cleaning up of our compiler engine code. commit b56c2dbcc7b4809646720c205f00d2c02c1517fe Author: Alan Garny Date: Fri Sep 27 11:35:38 2013 +0200 Some minor cleaning up. commit 3076b8bf55371597a9fd069c3fd898797b9c1b86 Author: Alan Garny Date: Fri Sep 27 09:33:50 2013 +0200 Some minor rearrangement of code. commit 39fbc047ac96289f813b5276b115209d101c6ac7 Author: Alan Garny Date: Fri Sep 27 09:32:57 2013 +0200 Some minor typos. commit a44767d1c802dd6f2ea92813de30abc591d0f210 Author: Alan Garny Date: Thu Sep 26 20:20:49 2013 +0200 Updated our LLVM binaries on Windows, now that we need access to the llvm::Function class. commit 5293ef73ebab14129e1af4ebdd46b706983406e1 Author: Alan Garny Date: Thu Sep 26 18:56:58 2013 +0200 Make sure that we are able to retrieve the compiled ODE/DAE functions of a CellML file. commit dff41e8853aa289334108275b7a6bf212b474767 Author: Alan Garny Date: Thu Sep 26 17:20:58 2013 +0200 Updated the user documentation. commit 7c41bd0426e427717416d743f02d0c93d3e9e775 Merge: 788705ab2 868e3a804 Author: Alan Garny Date: Thu Sep 26 15:01:09 2013 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 788705ab24c99c9b18f01443dd8ce88207616490 Author: Alan Garny Date: Thu Sep 26 15:00:20 2013 +0200 New snapshots. commit 868e3a804e1f308d983be519de45524364690f8f Author: Alan Garny Date: Thu Sep 26 14:44:05 2013 +0200 Fixed an issue with states being recomputed when they shouldn'\''t have (closes #234). commit 09a13f7cf47878e4ca5d3e51d570ad2fd6b6e3d3 Author: Alan Garny Date: Thu Sep 26 14:39:43 2013 +0200 Some minor cleaning up. commit 679669e70649494b5476f487a508b11aafe555dc Author: Alan Garny Date: Thu Sep 26 13:53:53 2013 +0200 Added a copy action to our graph panel'\''s context menu. Also fixed a minor issue with handling a double click in a graph panel. commit 54e083cd3dcbafb77c5bc983e12123d6f23b6164 Author: Alan Garny Date: Thu Sep 26 13:53:01 2013 +0200 Some minor cleaning up. commit 7c6e59a717ac505eef4e45a3fd0dcd5e0edea49b Author: Alan Garny Date: Thu Sep 26 13:23:32 2013 +0200 (Greatly) improved the showing of coordinates and zooming of a region in our graph panel (closes #237 as a result). commit 3a92130438063ec16f9eed391fff50a982553118 Author: Alan Garny Date: Wed Sep 25 17:38:33 2013 +0200 Fixed a silly boolean test (#238). commit a6226549c824a2c061901fa6025dd863cd42cd4c Author: Alan Garny Date: Wed Sep 25 16:57:10 2013 +0200 Some work on addressing HiDPI-related issue in our graph panel (#237). commit 14c2a13357324d1f9c21b021719a420ab9c5f951 Author: Alan Garny Date: Wed Sep 25 15:39:31 2013 +0200 Some work on addressing HiDPI-related issue in our graph panel (#237). commit b352bb29d576ea7f2265c9871df302f712b1c061 Author: Alan Garny Date: Tue Sep 24 18:58:08 2013 +0200 Some minor cleaning up. commit 3df64ed36b76cfc8cffcabe83fffb6bc15acec4f Author: Alan Garny Date: Tue Sep 24 17:53:27 2013 +0200 New snapshots. commit 1825cb81e6e094d1de3a43dd2f9046374a27bde5 Author: Alan Garny Date: Tue Sep 24 17:51:47 2013 +0200 Fixed a silly issue with panning and zooming in/out that got introduced while recently refactoring some code. commit 1653c751d3f7cefe7ae18446c75347eb60db8967 Author: Alan Garny Date: Tue Sep 24 17:24:13 2013 +0200 Some minor improvements to our graph panel'\''s plot widget. commit 89514b9ba25a138c67dd93339fd6b521c73e96f0 Author: Alan Garny Date: Tue Sep 24 16:55:18 2013 +0200 Some minor improvements to our graph panel'\''s plot widget. commit 2aa73d821e8fc01e41648eaedb92d92554a5d6a4 Author: Alan Garny Date: Tue Sep 24 15:33:04 2013 +0200 Fxed a silly mistake with zooming a region in a graph panel. commit d570ea9b9f9e124dee2f0ec3513c86e576cccc2e Author: Alan Garny Date: Tue Sep 24 15:02:35 2013 +0200 Added a custom context menu to our graph panels to zoom in/out and reset the zoom level (closes #238). commit e471aeaab5c2400645a4baada7374484b1f2231f Author: Alan Garny Date: Tue Sep 24 15:00:28 2013 +0200 Addressed an issue with some plugins not being properly translated. commit 1118107eb9ce007a2b5f0a9b5dfc225feec93d30 Author: Alan Garny Date: Tue Sep 24 15:00:05 2013 +0200 Some minor cleaning up. commit d29b1abe849220db60d2c5323fb1b7f4fa3a1059 Author: Alan Garny Date: Tue Sep 24 11:32:09 2013 +0200 Some minor refactoring. Also fixed a small issue with the copy action in our CellMLModelRepository plugin. commit edfc14802f9720cebb98194bcd306641ff4affbc Author: Alan Garny Date: Mon Sep 23 17:44:26 2013 +0200 Some minor cleaning up. commit 53d33e19ea6795eac405eba03f2918f21e506243 Author: Alan Garny Date: Mon Sep 23 17:18:38 2013 +0200 New snapshots. commit f2762c704a8dcda92bb61fc78dc76e4fd84e5bb4 Author: Alan Garny Date: Mon Sep 23 16:59:36 2013 +0200 Some minor updates to our user documentation. commit 32af454f5c8ffa2423c76d677abe13464076a8fe Author: Alan Garny Date: Mon Sep 23 16:29:26 2013 +0200 Simulation plugin: fixed an issue that occurred when double clicking on a graph panel (to copy its contents to the clipboard). commit e5097de0af31dcce725b3cc7389175aa4bf53601 Author: Alan Garny Date: Mon Sep 23 15:47:56 2013 +0200 Some minor refactoring and improvements to our plotting widget. commit 8f59def779659209b9adc9ffc9c0c52b9c738079 Author: Alan Garny Date: Mon Sep 23 11:32:14 2013 +0200 Make sure that the mouse wheel can only be used when not already carrying out another action (closes #239). commit 8e272b3d106691500e6a5a63b09bcc1ad0e5dccc Author: Alan Garny Date: Mon Sep 23 09:36:49 2013 +0200 Updated our copy of Qwt'\''s MathML renderer from https://github.com/uwerat/qwt-mml-dev. commit b2abbd99f829118b938fd3eb92254e96639656d0 Author: Alan Garny Date: Fri Sep 20 19:17:39 2013 +0200 Removed some verifications in the Compiler plugin tests. Indeed, we were checking the error message, but this wouldn'\''t work on a non-English system... commit b4a84fac6222178e5cc2cf7b0d3f747871912d22 Author: Alan Garny Date: Fri Sep 20 10:12:25 2013 +0200 Made sure that make.bat generates a release version of OpenCOR. commit a358b6c7142a7f9494cfe745c5cee9b546678f04 Author: Alan Garny Date: Fri Sep 20 09:58:11 2013 +0200 Made the zooming in/out less sensitive (closes #235). commit a920f81db3c41217cc04cbeeb5d386bc504d7b6f Author: Alan Garny Date: Thu Sep 19 14:50:07 2013 +0200 Now use jom (i.e. parallel compilation) to build OpenCOR from the command line on Windows. commit 8c25b3396b05d374f0d25fffe21ea77a41a15efd Author: Alan Garny Date: Wed Sep 18 18:07:09 2013 +0200 New snapshots. commit ae9fe0b286cc7ee84e04ca7090fecbb39722b510 Author: Alan Garny Date: Wed Sep 18 17:35:19 2013 +0200 On OS X, build OpenCOR using the oldest SDK shipped with Xcode. commit ba7d6a53125c29948c3d94b294bd4e87353b29e2 Author: Alan Garny Date: Wed Sep 18 15:02:51 2013 +0200 Rebuilt LLVM using the oldest SDK (10.7) available with Xcode 4.6.3. commit d45821436d5a12af27e85f6b9dde5fba7666e8ac Author: Alan Garny Date: Wed Sep 18 11:27:35 2013 +0200 On OS X, build OpenCOR using the oldest SDK shipped with Xcode. commit d6a8504dca6f11e17ded3d2bfd40c8900b67f258 Author: Alan Garny Date: Wed Sep 18 11:20:30 2013 +0200 Some minor cleaning up. commit affba49643ea4b659c633e43d73e6023aa62df43 Author: Alan Garny Date: Tue Sep 17 19:01:40 2013 +0200 Some minor cleaning up. commit 0d6ae1d2d0a2cbb5207f0a005749f3d06f0938bc Author: Alan Garny Date: Tue Sep 17 17:43:15 2013 +0200 Some minor cleaning up. commit c095afd5d04b507ee98ab06fd8b4e2b15efa36d0 Author: Alan Garny Date: Tue Sep 17 16:31:25 2013 +0200 Minor reformatting of our README.txt file. commit 9133927edd21331ca974467cc91bc00b28bf01e0 Author: Alan Garny Date: Mon Sep 16 17:39:37 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 05b1aed736532b0737058148252c4678e4fa84c6 Author: Alan Garny Date: Mon Sep 16 15:12:05 2013 +0200 Some work on Qwt'\''s MathML renderer. commit bbe7b59ca5a05c4e24298468c26cb718612af7cb Author: Alan Garny Date: Sun Sep 15 17:28:19 2013 +0200 Minor update to the user documentation. commit ee8a2782701ddec853ae5bf509bd5e7333fa6b19 Author: Alan Garny Date: Sat Sep 14 17:40:27 2013 +0200 Some work on Qwt'\''s MathML renderer. commit e7014f4d0beef0c1d0a200986a4f5222b0650469 Author: Alan Garny Date: Fri Sep 13 10:57:57 2013 +0200 Slight update to the user documentation. commit b665cb77b297c07fbcb996ec10f4098996094df0 Author: Alan Garny Date: Fri Sep 13 10:52:36 2013 +0200 Added Noble 1962 as one of the model examples (closes #232). commit 947e51fb3287dc4c69416713f6f5c8fc65ff717d Author: Alan Garny Date: Thu Sep 12 18:44:06 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 467cb6e077d7ab154c96bdcdc4bedef573352a6f Author: Alan Garny Date: Thu Sep 12 16:12:41 2013 +0200 Some work on Qwt'\''s MathML renderer. commit c384a2270dd98ac920afb6c52f217d1cd80fbe29 Author: Alan Garny Date: Wed Sep 11 18:28:17 2013 +0200 Some work on Qwt'\''s MathML renderer. commit ba5a843b06f374b7ea18c5e1a8f1d1c0db37780e Author: Alan Garny Date: Wed Sep 11 11:57:04 2013 +0200 Minor update to the developer'\''s documentation. commit 9df1932d3570e3c478c833ed9a9faf3479458975 Author: Alan Garny Date: Tue Sep 10 14:51:56 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 66154e50090f87042b248f9a3285fbcfcf8a36e9 Author: Alan Garny Date: Mon Sep 9 19:26:03 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 86310c3bd0f1e8d5f031b4dd75f3087fae9b974c Author: Alan Garny Date: Mon Sep 9 16:27:38 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 26b89b9ba77034a4c475c174350f93ad655bd2a8 Author: Alan Garny Date: Mon Sep 9 12:59:22 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 6246205f9b86fe1aecd0b03893c1d455686d5987 Author: Alan Garny Date: Mon Sep 9 09:07:45 2013 +0200 Some work on Qwt'\''s MathML renderer. commit eb7d5ae3a462398dbbaa6666c37c124b68aa56d1 Author: Alan Garny Date: Sun Sep 8 17:15:25 2013 +0200 Some work on Qwt'\''s MathML renderer. commit e26f9e4ef55ace69f9297653ea1e892b2c66dcfa Author: Alan Garny Date: Fri Sep 6 17:50:00 2013 +0200 Some work on Qwt'\''s MathML renderer. commit bc7df9e5e12546a751a25899348726e60cae8266 Author: Alan Garny Date: Fri Sep 6 16:55:43 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 0c8c22a3282ba6f47b5d377142edb64b7c2f7dd0 Author: Alan Garny Date: Thu Sep 5 19:32:33 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 7a7003dff022ee09b8c5c502d1f14dfb748ed2d8 Author: Alan Garny Date: Thu Sep 5 17:41:11 2013 +0200 Some work on Qwt'\''s MathML renderer. commit ec840c49a2386f279679b4691b77645671118ed1 Author: Alan Garny Date: Thu Sep 5 14:11:14 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 7e48c9765e7cec07a58f36411afbd753890639a5 Author: Alan Garny Date: Wed Sep 4 18:51:13 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 49c89ef00f68ac74b3dcb5fe1c274288043670e3 Author: Alan Garny Date: Wed Sep 4 18:39:20 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 703de419c23948a15e8c7096a950aa6125e4bc69 Author: Alan Garny Date: Wed Sep 4 16:20:47 2013 +0200 Some work on Qwt'\''s MathML renderer. commit e93926647479a6e908c4200197b8691b6f6f4bd7 Author: Alan Garny Date: Wed Sep 4 13:03:30 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 33e0787d56181c6432d849b34dd5fe27b7ed2d36 Author: Alan Garny Date: Mon Sep 2 19:16:29 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 3c7211318b8e87e84a3858c32e38f3482fad7047 Author: Alan Garny Date: Mon Sep 2 16:54:10 2013 +0200 Improved the formatting of error messages. commit b2d411008bf8a7b5c520a1bfbeaca8b05ef8ae77 Author: Alan Garny Date: Sun Sep 1 21:05:48 2013 +0200 Some minor cleaning up. commit f63ac53a53ca3443469a3c372d6ae3c151f4ae86 Author: Alan Garny Date: Sun Sep 1 20:39:10 2013 +0200 Minor update to the developer documentation. commit 9c5168aec0100177989dca7906462e41099b3a16 Author: Alan Garny Date: Fri Aug 30 19:33:36 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 01ec347476b78d9634dfa848eaebc72a7a752a74 Author: Alan Garny Date: Fri Aug 30 18:17:43 2013 +0200 Some work on Qwt'\''s MathML renderer. commit c2128bf54cebea06da7eb61534fa1131afa7d616 Author: Alan Garny Date: Fri Aug 30 10:16:39 2013 +0200 Qt 5.1.1 fixes an issue that got introduced in Qt 5.1.0 (closes #). commit 01a2868580847e7248fd9e8c2fedb57c0f8b4ea9 Author: Alan Garny Date: Fri Aug 30 10:09:13 2013 +0200 Some work on Qwt'\''s MathML renderer. commit 26ea7993e89349dccfb7d7099b8f188f5f7c7777 Author: Alan Garny Date: Thu Aug 29 19:14:34 2013 +0200 Some work on Qwt'\''s MathML renderer. commit afd2c8fe4fe4aef20dc36bfb831cea8e4cb2ad49 Author: Alan Garny Date: Thu Aug 29 13:53:31 2013 +0200 Use Qt with OpenGL on Windows (#229). Indeed, this is needed for Windows XP (see http://qt-project.org/wiki/Qt-5-on-Windows-ANGLE-and-OpenGL). commit 0941dca1c54ca66a9c9263bbf2dc532d551a48b5 Author: Alan Garny Date: Wed Aug 28 16:38:06 2013 +0200 Some minor cleaning up. commit be62e40ddc2ccfe8f77803f048a0ede7b52b5a9b Author: Alan Garny Date: Wed Aug 28 14:32:58 2013 +0200 Updated the developer documentation as a result of Qt and Qt Creator having been updated (Qt 5.1 -> 5.1.1 and Qt Creator 2.7.2 -> 2.8.1). commit aea22948b1ed6d8365b438c770a85601903792a8 Author: Alan Garny Date: Wed Aug 28 14:32:25 2013 +0200 Updated the developer documentation as a result of Qt and Qt Creator having been updated (Qt 5.1 -> 5.1.1 and Qt Creator 2.7.2 -> 2.8.1). commit d18c9e7a58db8714534d2f67c3d567f4ee8fdada Author: Alan Garny Date: Wed Aug 28 13:49:15 2013 +0200 Qwt'\''s MathML renderer: replaced '\''double'\'' with '\''qreal'\'' which is more portable. commit f89f686b1bf47ae552078176667431df859769af Author: Alan Garny Date: Wed Aug 28 11:57:24 2013 +0200 Some minor cleaning up of our Qwt'\''s MathML renderer code. commit f0979a284859e9e6f6c413dab09daebfb2908f82 Author: Alan Garny Date: Wed Aug 28 08:50:49 2013 +0200 Minor cleaning up. commit 0108f307bb69ca0905999a3a9917640714a25768 Author: Alan Garny Date: Tue Aug 27 23:01:05 2013 +0200 Minor update to our third-party libraries page. commit 78bcb685d7c809042ef75f890ee13fb3339af212 Author: Alan Garny Date: Tue Aug 27 19:54:51 2013 +0200 Released OpenCOR under Apache 2.0 (closes #226). commit 9955ef33726fa4d0d0f5197210d57398bce02a31 Author: Alan Garny Date: Tue Aug 27 17:00:00 2013 +0200 Qwt'\''s MathML renderer: now use a floating point based approach. commit 6a439edaea089a469ab529036b7dd2cd5c657af1 Author: Alan Garny Date: Tue Aug 27 16:49:56 2013 +0200 File access rights issue. commit 63522271fc563ca734ee8e9854e8a288b120c889 Author: Alan Garny Date: Mon Aug 26 16:15:30 2013 +0200 Qwt'\''s MathML renderer: kind of starting over by reverting to the QtMmlWidget version that works with Qwt, and which contains the various cleaning ups. Indeed, the idea is to make the renderer use a floating point based approach rather than an integer one. By doing this, maybe some of the issues we found will disappear… commit 7de5a9a8c79fc26e0a07b8ad143a0f5000f3ff40 Author: Alan Garny Date: Fri Aug 23 15:46:55 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the line for mfrac being too thin (#225). commit 959f283bdd7d982917062475c444335b07fa78ad Author: Alan Garny Date: Fri Aug 23 15:45:29 2013 +0200 Some minor cleaning up. commit f5d4492692baea8d70ccd7e845ce835ff5854304 Author: Alan Garny Date: Fri Aug 23 15:42:05 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the line for mfrac being too thin (#225). commit a4692db0084e11a67a34c72971a125013a4e9798 Author: Alan Garny Date: Fri Aug 23 15:41:30 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the line for mfrac being too thin (#225). commit 9e1ed6a229dfd2ea7a6c950502e5ef2069d5d5bf Author: Alan Garny Date: Fri Aug 23 11:28:12 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the sub and sup bits of msubsup overlapping (#225). commit 9854cc81f4a4d84ef5b87a35c09294143240cd9c Author: Alan Garny Date: Fri Aug 23 10:50:27 2013 +0200 Added a link to OpenCOR'\''s Twitter account (closes #227). commit 6270f643d72124de988a8dc5b4a6102734dcff4b Author: Alan Garny Date: Thu Aug 22 19:31:11 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the horizontal line for msqrt and mroot being too thin on all platforms and even too low on Windows (#225). commit 888e861ef6dc673a38affd7ce77894cfc76120c6 Author: Alan Garny Date: Thu Aug 22 19:09:37 2013 +0200 Qwt'\''s MathML renderer: fixed the issue of the horizontal line for msqrt and mroot being too thin on all platforms and even too low on Windows (#225). commit 7bb27443eeee2dff78119c9193133279b0fbf080 Author: Alan Garny Date: Thu Aug 22 13:33:27 2013 +0200 Some cleaning up of Qwt'\''s MathML engine. commit 5d77aa87cf95f2c0bbed0b80cd9b39c9336502dc Author: Alan Garny Date: Wed Aug 21 20:17:13 2013 +0200 Some cleaning up of Qwt'\''s MathML engine. commit 6f827b06f238ec0fb1d2f27b8bf1eb0697423632 Author: Alan Garny Date: Wed Aug 21 20:15:45 2013 +0200 Some cleaning up of Qwt'\''s MathML engine. commit 949b8edb5606ea3e3eebff2a8002617436f872d6 Author: Alan Garny Date: Wed Aug 21 19:57:14 2013 +0200 Some cleaning up of Qwt'\''s MathML engine. commit 7cfecb4065b75ce45c86df868f4ed8c2e9d77439 Author: Alan Garny Date: Wed Aug 21 19:50:59 2013 +0200 Some cleaning up of Qwt'\''s MathML engine. commit 9f94b3f150bf325db72b8821ec731152d80e64b1 Author: Alan Garny Date: Wed Aug 21 19:15:51 2013 +0200 Some minor cleaning up. commit eff4fbe8faf79c1788b4b1e48c64a744f3a24850 Author: Alan Garny Date: Wed Aug 21 19:04:50 2013 +0200 Slight improvement to our Viewer widget. commit bd2dea456cf406b9c70248ed476efedf098ff5bb Author: Alan Garny Date: Wed Aug 21 18:16:28 2013 +0200 Re-enabling our (temporarily) disabled plugins. commit c9e2992a1bbe80fdd99311e6d17406fa6cba9c91 Author: Alan Garny Date: Wed Aug 21 18:14:20 2013 +0200 Slight improvement to our Viewer widget. The previous commit was fine for Linux and OS X, but not Windows! commit 2cf2ff3ed591f2195c604b2f0123eb790019362e Author: Alan Garny Date: Wed Aug 21 18:06:59 2013 +0200 Slight improvement to our Viewer widget. commit 770eeae2cb65d4d0944d046e47b145d27d7ac22a Author: Alan Garny Date: Wed Aug 21 18:01:39 2013 +0200 Some minor cleaning up. commit 068486db33d4d10268741fcbb63781158e870ea7 Author: Alan Garny Date: Wed Aug 21 18:01:26 2013 +0200 Fixed the issue with Qwt'\''s MathML engine (closes #222). commit eb94951a12af44872428949d8aa3191fdd503311 Author: Alan Garny Date: Wed Aug 21 17:59:07 2013 +0200 Some minor cleaning up. commit ed8916f43782c0c5bf4fd73bd5407892a4714ab8 Author: Alan Garny Date: Wed Aug 21 17:54:27 2013 +0200 Some minor cleaning up. commit 477e85a98f34233f46d20b4920b1cab105096563 Author: Alan Garny Date: Wed Aug 21 16:54:52 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit cffa11eb84e0da3bf38180c6c0ce4ddfca2663ae Author: Alan Garny Date: Wed Aug 21 16:45:19 2013 +0200 Some work on Qwt'\''s MathML engine (#222). Kind of starting afresh in that we have reverted our use of devicePoint(relOrigin()). Also made a few changes that we made in QtMmlWidget back then. commit 3ffc484fdfefd856a80eb7f1ec3a3afc82b42df4 Author: Alan Garny Date: Wed Aug 21 13:32:48 2013 +0200 Suggest a minimum size for our viewer widget. commit f7cf2a697cfc94e184d46ebb7163ea69cb678937 Author: Alan Garny Date: Tue Aug 20 19:33:00 2013 +0200 (Temporarily) disabling some plugins. commit 9638e8e5aac1c6d29d492d0a58902b46a3cabb7e Author: Alan Garny Date: Tue Aug 20 19:27:12 2013 +0200 Some work on our Viewer widget. commit 1b395682233d7d8e6ff211102aa6946e1e4027ef Author: Alan Garny Date: Tue Aug 20 18:37:18 2013 +0200 Some work on our Viewer widget. commit a9f53e0b9ef378a2a2a1ead89ee1649ae240e3ca Author: Alan Garny Date: Tue Aug 20 17:17:22 2013 +0200 Our logo didn'\''t get properly renamed (on Linux) in a previous commit (from Windows). commit ab3137b615a7cfb9881d50df568158100b7ce664 Author: Alan Garny Date: Tue Aug 20 16:09:48 2013 +0200 Some work on our Viewer widget. commit ea3e13fe4cc67664f160691d0b6dcd6e5323ee14 Author: Alan Garny Date: Tue Aug 20 15:56:54 2013 +0200 Some work on our Viewer widget. commit 65f2ab3ff2432f3c5183ec83b15884a37b981a03 Author: Alan Garny Date: Tue Aug 20 11:43:32 2013 +0200 Some minor cleaning up. commit cfc044de4596e77acb4d491030b0c696bb2e2874 Author: Alan Garny Date: Mon Aug 19 17:53:47 2013 +0200 Some minor cleaning up. commit bc8bbaf8de9cd0df75d40f5c71d7363df2ee5f43 Author: Alan Garny Date: Mon Aug 19 15:42:50 2013 +0200 Some minor cleaning up. commit 200ceadbc18173c41847a6b0ae3644ef6d7525e5 Author: Alan Garny Date: Mon Aug 19 15:40:24 2013 +0200 Some minor cleaning up. commit bba65c5fd8d49cb39f134dfcc1f61ac8ec39a728 Author: Alan Garny Date: Mon Aug 19 15:16:13 2013 +0200 Updated the version of the Oxygen library. commit 76eed208e4c3ac1ead005073e1846cc731b7f9a5 Author: Alan Garny Date: Mon Aug 19 15:12:16 2013 +0200 Some minor refactoring. commit 44a894d555e48279e49947d7b6ec87868f9be1ce Author: Alan Garny Date: Mon Aug 19 13:12:35 2013 +0200 Slight update to the CellMLModelRepository plugin to use an alternative URL to PMR2. commit 31fb0662c14ecc9c0ae3da24e5d0db092c407760 Author: Alan Garny Date: Mon Aug 19 13:05:40 2013 +0200 Slight update to the CellMLModelRepository plugin to use an alternative URL to PMR2. Indeed, http://models.cellml.org/workspace/rest/contents.json is reported as being suspicious by Sophos while https://models.physiomeproject.org/cellml/workspace/rest/contents.json isn'\''t. commit 21a9948503e6ae76d1666a2cbc84c322543f821a Author: Alan Garny Date: Mon Aug 19 09:53:53 2013 +0200 Our logo didn'\''t get properly renamed (on Linux) in a previous commit (from Windows). commit 02093f4714b0bba90e9dd2f2a56facee3990aa78 Author: Alan Garny Date: Sat Aug 17 12:55:41 2013 +0200 Fixed a couple of issues with Firefox and Internet Explorer when it comes to the copyright information for our documentation / web site. commit 7e880993b929126cbf66fa531cd0d0f419b11723 Author: Alan Garny Date: Tue Aug 13 23:27:11 2013 +0200 Fixed a small CSS issue with Internet Explorer (at least that version). commit f8c77c82fe8c7774a8962127e83fe7855e6b4c81 Author: Alan Garny Date: Tue Aug 13 21:02:37 2013 +0200 Added links to the VPR project. Also some minor cleaning up. commit 9b9431198f0a1b1612d270805f7b9fa8a3ae0865 Author: Alan Garny Date: Tue Aug 13 20:44:35 2013 +0200 Fixed a minor issue with our CellMLAnnotationView plugin. commit e945c7ee44c1f8c73f6d97ac349876e8d2f9f3b8 Author: Alan Garny Date: Tue Aug 13 18:22:32 2013 +0200 Minor cleaning up of the CellMLAnnotationView plugin. commit ea616cf494322d558209d3fff731dd452d71b302 Author: Alan Garny Date: Sat Aug 10 20:55:47 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit d30a952c515c4b6dfa4d01365dfd399149d47100 Author: Alan Garny Date: Sat Aug 10 18:01:15 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit 62e427ca5f850d8ab2a9389c6d51eaa07f204acd Author: Alan Garny Date: Sat Aug 10 17:48:35 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit b8ec1db7174eec868ebe0bf298d9fa7967acd8be Author: Alan Garny Date: Sat Aug 10 17:44:21 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit e007442bf345554aad8cd9d4af6a9ef05ceecf40 Author: Alan Garny Date: Sat Aug 10 16:59:07 2013 +0200 Some work on Qwt'\''s MathML engine (#222). commit 8c1c96cdd97dbee667449e1a2afed3eebc37b0a9 Author: Alan Garny Date: Sat Aug 10 16:38:25 2013 +0200 Some minor cleaning up of Qwt'\''s MathML engine. commit 17048525ab044e361335fbfc392205df3b846dc6 Author: Alan Garny Date: Sat Aug 10 15:24:06 2013 +0200 Some minor cleaning up. commit a6b53fb17a2f3c6bea9514123b3c6db35b733124 Author: Alan Garny Date: Sat Aug 10 15:16:42 2013 +0200 Argh, Ctrl+Space (to show/hide docked widgets) doesn'\''t work on OS X! commit 28d08af1a66eb4d90490d61f88fb19a61b04335f Author: Alan Garny Date: Sat Aug 10 14:54:27 2013 +0200 Also use Ctrl+Space on OS X to show/hide docked widgets. commit cb0fcf46c80f967367eeefa85fb3d1b50fe821ae Author: Alan Garny Date: Sat Aug 10 14:33:51 2013 +0200 Some minor cleaning up of Qwt'\''s MathML engine. commit c52648f53496f320be373e826edc90bbea71dea7 Author: Alan Garny Date: Sat Aug 10 13:58:31 2013 +0200 Some minor cleaning up of Qwt'\''s MathML engine. commit 7f59b0afc8469736d259fbdfb50d3a9e1a29906c Author: Alan Garny Date: Fri Aug 9 19:23:13 2013 +0200 Minor update to the version of the Oxygen icons we use. commit 8380a3193433f442f28177907d9ecc3c96078c01 Author: Alan Garny Date: Thu Aug 8 16:39:46 2013 +0200 Fixed an issue with integer properties in PropertyEditorWidget. We were allowed to enter something like 1e3, yet QString::toInt() wouldn'\''t recognise it... commit c8408770c2a6a19591f4fffb6f5c302aefd49a4b Author: Alan Garny Date: Thu Aug 8 14:01:04 2013 +0200 Some minor cleaning up. commit 5654d8be712d7d6b14384748c7efb3aa37783e66 Author: Alan Garny Date: Thu Aug 8 13:49:05 2013 +0200 Some minor improvement to our Viewer plugin (#222). commit 359eeb66442feb349cedcf4d7f3e6c7c051e63c0 Author: Alan Garny Date: Thu Aug 8 13:47:09 2013 +0200 Some minor cleaning up. commit 86cf7944df8b08b471f229c26221db557506754b Author: Alan Garny Date: Thu Aug 8 13:47:03 2013 +0200 Some minor improvement to our Viewer plugin (#222). commit b3e4fb63123c6ccd5f7285b89cae3a78ab8a63ae Author: Alan Garny Date: Thu Aug 8 13:31:45 2013 +0200 Fixed a small issue of compilation for our Viewer plugin on Windows. commit d186dafadcc65e9f4bdc72dff4bd151df647399f Author: Alan Garny Date: Thu Aug 8 13:17:48 2013 +0200 Some minor cleaning up. commit fd92fe6956e2349974a33b079244484706f30085 Author: Alan Garny Date: Thu Aug 8 13:11:43 2013 +0200 Now have a way to clear previously computed data (closes #223). commit 77903b21dc38252777d671214be73f45a1b3e90c Author: Alan Garny Date: Thu Aug 8 11:31:15 2013 +0200 Some work on getting ViewerWidget to work as it used (#222). commit 7485ef12d25e425de3a14b6f604db70974c9dd72 Author: Alan Garny Date: Thu Aug 8 09:53:02 2013 +0200 Fixed some corner case issues with our optimising of axes in our graph panels. commit f7f26a5d0d9c941d90526b98854a53081d556aa3 Author: Alan Garny Date: Wed Aug 7 16:00:33 2013 +0200 Removed our dependency on QtMmlWidget (closes #221). Note that our MathML viewer is not working as it used to anymore. Most likely some differences between QtMmlWidget and the version used in Qwt. commit 367772aefa07d964e0e15f2954c134d90a611cfa Author: Alan Garny Date: Wed Aug 7 09:37:04 2013 +0200 Fixed an issue that made OpenCOR crash upon starting when a plugin needed another plugin which wasn'\''t available (closes #220). commit bfe1a1dd5a01a97bde37ee9443d7d8bb5fb1cf1e Author: Alan Garny Date: Tue Aug 6 19:10:43 2013 +0200 Fixed a small compilation issue with our CellMLAnnotationView plugin on Windows. commit 4b4e9f5e974d5be14cf22644e82ae9fddd2555b0 Author: Alan Garny Date: Tue Aug 6 18:30:12 2013 +0200 Fixed the exporting of some classes on Windows. commit 1c1a8e5e17f0e391fe88ca44f5c76937023aa3a6 Author: Alan Garny Date: Tue Aug 6 18:09:22 2013 +0200 Forgot to export some classes for Windows. commit 773046e1d0fc5d17eac29bc4ddef015c45927114 Author: Alan Garny Date: Tue Aug 6 17:53:30 2013 +0200 Fixes the issue with trying to open the plugins window when no selectable plugins are available (but at least one non-selectable plugin is) (closes #219). commit 8ed9fe1cbd52caa3a9191251532fe4a32f5f020a Author: Alan Garny Date: Tue Aug 6 17:29:58 2013 +0200 Re-enabled our editing views (RawView and RawCellMLView). Also added a way to show/hide inherited menus/actions. commit cba9be5f932f24a195f7d57a25bf04b4b4663bfe Author: Alan Garny Date: Mon Aug 5 20:06:10 2013 +0200 New snapshots. commit c12e5ecf52e87590afca3f60cfc931635370a648 Author: Alan Garny Date: Mon Aug 5 20:01:19 2013 +0200 Wrong screenshot file. commit 0a47cfd71c49c5ec0c2ea8158d144973b7315f2a Author: Alan Garny Date: Mon Aug 5 19:54:29 2013 +0200 Updated the user documentation with regards to the new features in our simulation plugin (closes #31). commit 456951fa0f5ea9c6fb57d1c57af51e4a40152c1a Author: Alan Garny Date: Mon Aug 5 17:28:54 2013 +0200 Updating the user documentation with regards to the new features in our simulation plugin (#31). commit 46ca5062b092037db10d490ba052ce9473bea4c2 Author: Alan Garny Date: Mon Aug 5 17:00:30 2013 +0200 Added a readme file for generating documentation screenshots. commit ffd34dc064cf073facafb1e29a1f1e9d3db10e6c Author: Alan Garny Date: Mon Aug 5 17:00:10 2013 +0200 Slight updates to the user documentation (#31). commit 41afe193287517612949921f24b8e412f6ea5f42 Author: Alan Garny Date: Mon Aug 5 16:32:11 2013 +0200 Minor update to our developer documentation. commit fc50f405586b7ed678d9786c174d54a70e6acb53 Author: Alan Garny Date: Mon Aug 5 16:12:50 2013 +0200 Some minor comments. commit 82b7504b8dbc69a0629338b28e8b0d9a090e0f33 Author: Alan Garny Date: Mon Aug 5 15:40:47 2013 +0200 Distinguish unlocked graphs (in blue) from locked ones (in red) (#31). commit 222350f848b334d07d731a2df418f794598c2b82 Author: Alan Garny Date: Mon Aug 5 15:34:22 2013 +0200 Distinguish unlocked graphs (in blue) from locked ones (in red) (#31). commit c88ada56e6397662cfb626b205b5e18fb9a976e2 Author: Alan Garny Date: Mon Aug 5 15:27:52 2013 +0200 Improved the setting of our axes (#31). commit 1ed84d58b3a85bcd8a0e4bedac8d012aae04d6e9 Author: Alan Garny Date: Mon Aug 5 14:33:23 2013 +0200 Some work on the plotting of graphs (#31). commit 4eaa9334b1379cb9220f674cd37d36a3e2daf258 Author: Alan Garny Date: Mon Aug 5 13:21:13 2013 +0200 Improved our property editor widget by allowing a property to be checked/unchecked. commit 9c67c4a24f41f0224b5a10e5b01fbca1b9a0a5c4 Author: Alan Garny Date: Sun Aug 4 19:47:49 2013 +0200 Some work on the plotting of graphs (#31). commit ed7e2d58c4ca774dec0789854d0cc8c38ab0303c Author: Alan Garny Date: Sun Aug 4 19:33:13 2013 +0200 Some minor cleaning up. commit 1bb91ccc8ee1769f7ab5da68efa6c870d736f07c Author: Alan Garny Date: Sun Aug 4 16:50:25 2013 +0200 Some (very) minor improvement. commit e15f020639844fb665262cf8b6c8d44e52868c77 Author: Alan Garny Date: Sun Aug 4 13:17:07 2013 +0200 Minor comment. commit 44f2795f7243f74d6b1760c03ca29a7deb3dde1d Author: Alan Garny Date: Sat Aug 3 13:49:57 2013 +0200 Addressed an issue with removing a graph panel which contains at least one graph (#31). commit 0dffceb402c2ff08605d317befc6ac09c1597e0d Author: Alan Garny Date: Sat Aug 3 00:16:00 2013 +0200 Added a comment. commit 62d929a1e1dcf1f532d5566ac12b1f62ee96e0dc Author: Alan Garny Date: Fri Aug 2 18:45:01 2013 +0200 Some work on the plotting of graphs (#31). commit 4a36058a94601c80a6d926e187d8e6458a189ff7 Author: Alan Garny Date: Fri Aug 2 17:55:11 2013 +0200 Fixed a small issue with building OpenCOR from the command line (closes #218). commit abfa943e25ccebabe37a1e4e8af0438285b873a5 Author: Alan Garny Date: Fri Aug 2 15:46:30 2013 +0200 Some minor fixes (#31). commit 58ab8b473f60e9696b83db442018b68d80abcb0b Author: Alan Garny Date: Fri Aug 2 14:53:55 2013 +0200 Some minor cleaning up. commit 60990ace9364fddfd6ac2589739a6547809e9ebf Author: Alan Garny Date: Fri Aug 2 14:14:52 2013 +0200 Some minor cleaning up (following the closing of https://bugreports.qt-project.org/browse/QTBUG-29549). commit fd4a6ed5d9614cd3441076d23b8412c6d81083fa Author: Alan Garny Date: Fri Aug 2 14:03:50 2013 +0200 Some work on the plotting of graphs (#31). commit d24348c2410e8ad66cad3becac72accd493535c9 Author: Alan Garny Date: Fri Aug 2 11:52:45 2013 +0200 Some work on the plotting of graphs (#31). commit 72ea9cc7a0294ea1d0ab3072aa5c07adababb525 Author: Alan Garny Date: Fri Aug 2 10:51:54 2013 +0200 Some work on the plotting of graphs (#31). commit 00f42b1a982163fc520a5469c03d1682fc311bbd Author: Alan Garny Date: Thu Aug 1 20:28:54 2013 +0200 Some work on the plotting of graphs (#31). commit 8e72e6e59018a960225314066e0a50f208a82c38 Author: Alan Garny Date: Thu Aug 1 16:07:55 2013 +0200 Some work on the plotting of graphs (#31). commit 004b3b4063ddfdb367541a7a3057b14970ba7c82 Author: Alan Garny Date: Thu Aug 1 15:21:10 2013 +0200 Some work on the plotting of graphs (#31). commit 127c5e0e409d8279bad244105b938ce1e57346c7 Author: Alan Garny Date: Thu Aug 1 14:43:46 2013 +0200 Some work on the plotting of graphs (#31). commit 404d9fae10809f1943130630b04cfecf9d9973e2 Author: Alan Garny Date: Wed Jul 31 18:50:53 2013 +0200 Some work on the plotting of graphs (#31). commit 703adacd0a954824d1c76d5c9027db8149351608 Author: Alan Garny Date: Wed Jul 31 14:51:28 2013 +0200 Minor fix to our graphs property editor (#31). commit a03d993cf8da923778e16bb0087fed0c57dc49bd Author: Alan Garny Date: Wed Jul 31 14:48:33 2013 +0200 Some work on the plotting of graphs (#31). commit 9af87d4e70972ad568dfce69ee0ddccaa897a9b3 Author: Alan Garny Date: Wed Jul 31 11:31:24 2013 +0200 Some work on the plotting of graphs (#31). commit baeb5de3f383365f05377bd921246149737d5a3a Author: Alan Garny Date: Tue Jul 30 17:17:25 2013 +0200 Some minor cleaning up. commit 85a0c12e2934ba982a2f7f756b51e4676b5c620d Author: Alan Garny Date: Tue Jul 30 15:46:28 2013 +0200 Some work on plotting graphs for another simulation (#31). Also some refactoring. commit cb1471d54b698de1e636696e26a862ee9ab806c2 Author: Alan Garny Date: Tue Jul 30 15:25:57 2013 +0200 Some minor refactoring (#31). commit a37741dc3a22a94f5726bd14a04858b4b991ae2c Author: Alan Garny Date: Tue Jul 30 14:16:59 2013 +0200 Some minor cleaning up (#31). commit 06a9393af0e2ccf8faac5328bd79245b90d7892c Author: Alan Garny Date: Tue Jul 30 11:12:31 2013 +0200 Some minor cleaning up (#31). commit e59c1916300758cb97f606b18c8323bf39e6afe2 Author: Alan Garny Date: Mon Jul 29 17:01:02 2013 +0200 Some minor cleaning up (#31). commit 827d799b6dc136053b5087af09f53744b18ceeec Author: Alan Garny Date: Mon Jul 29 16:40:32 2013 +0200 Some minor cleaning up (#31). commit 0553753c84485f17e3e986e107c8c9098a336241 Author: Alan Garny Date: Mon Jul 29 14:34:03 2013 +0200 Some minor cleaning up (#31). commit 6d60dd0b194e0a352f1687d265ff440864e7269c Author: Alan Garny Date: Mon Jul 29 13:34:39 2013 +0200 Some minor cleaning up (#31). commit 9ecdd21d999bd30dfb4c391c5f66c0fd31945b55 Author: Alan Garny Date: Mon Jul 29 11:32:32 2013 +0200 Some minor cleaning up (#31). commit 6abd59bf8f2614ddceb7368bf20c6f0761889978 Author: Alan Garny Date: Fri Jul 26 18:31:26 2013 +0200 Made our simulation output widget read-only and not accepting drops. commit 793d01e8470c2713622fbc16013052c88a85cc8e Author: Alan Garny Date: Fri Jul 26 18:12:15 2013 +0200 Some minor cleaning up (#31). commit fc5611d277361cbb4fe5ec3ac6e234e2bfe873f9 Author: Alan Garny Date: Fri Jul 26 17:04:15 2013 +0200 Fixed various potential issues with a CellML file with no runtime (i.e. the CellML file is malformed). commit 03e7467d76bcedc4a5ff4950091099a3d3af315e Author: Alan Garny Date: Thu Jul 25 17:58:28 2013 +0200 Some work on plotting any parameter against any other (#31). commit 097f9a9429fc5f693d0efeb08843ed3d62a0cdb0 Author: Alan Garny Date: Thu Jul 25 11:38:07 2013 +0200 Updated our copy of QtSingleApplication (from the Qt Creator repository, as always). commit fc4499e2d19e94dbc7faae49e265f0b3f3474669 Author: Alan Garny Date: Thu Jul 25 11:23:26 2013 +0200 Updated/cleaned up the information about our third-party libraries. commit afb40eb481405ea3f1dba1f33dabb17d2edaa474 Author: Alan Garny Date: Thu Jul 25 11:23:00 2013 +0200 Some minor cleaning up (#31). commit c9e70be4f589bb6f5e42253e165e053399a2f202 Author: Alan Garny Date: Thu Jul 25 09:35:33 2013 +0200 Some minor cleaning up (#31). commit 9cc245cf5c6b37cfa29907c24ff6316bae6457ca Author: Alan Garny Date: Thu Jul 25 09:14:23 2013 +0200 Some minor cleaning up (#31). commit 67dc7d5a5fbfab4e1f7962dfeaae62bf760deac3 Author: Alan Garny Date: Wed Jul 24 19:01:31 2013 +0200 Some minor cleaning up (#31). commit f295b20e0f6740750f2e96fff4321b0b11001bfe Author: Alan Garny Date: Wed Jul 24 17:43:49 2013 +0200 Our main simulation widget can now keep track the addition, removal and updating of a graph (#31). commit 0d9d973e796f42a19e82ee36d0e15da1a2d38d52 Author: Alan Garny Date: Wed Jul 24 15:27:18 2013 +0200 Some minor cleaning up (#31). commit 84bbfd634cb3c8ffca33a3cbc2bcd87a25c5e821 Author: Alan Garny Date: Wed Jul 24 14:28:07 2013 +0200 Some minor cleaning up (#31). commit c16318ee4dae410bd681910d2a3bfbe96103257b Author: Alan Garny Date: Wed Jul 24 11:53:22 2013 +0200 Can now remove the current graph panel or all of them (but the first one) (#31). commit 88846bb431355ed36bc39870c42da022cf80d0e1 Author: Alan Garny Date: Tue Jul 23 19:03:29 2013 +0200 Some minor cleaning up of our CellML 1.1 to 1.0 exporter. commit 623d3ffa1ca73c78849b550fc62b35fc56f57a43 Author: Alan Garny Date: Tue Jul 23 10:45:57 2013 +0200 Removed "&" from our actions (closes #216). commit 42d5035e21275c06f986d733d5b35904db87e07f Author: Alan Garny Date: Mon Jul 22 18:50:18 2013 +0200 Can now remove all graphs (#31). commit 4072bdd13500a1ea71012c72d5c215ca5bdadaf3 Author: Alan Garny Date: Mon Jul 22 18:47:54 2013 +0200 Can now remove the current graph (#31). commit db85d220248cab44c20bd5258cadd919d43f574f Author: Alan Garny Date: Mon Jul 22 18:07:56 2013 +0200 Some minor improvements to our simulation plugin. commit 7004e62c75914f85232566d443e3a953ed1509c8 Author: Alan Garny Date: Mon Jul 22 17:20:34 2013 +0200 Some minor cleaning up. commit 0c06d2d18d44f77dfa1366a07325c9246d7b34c4 Author: Alan Garny Date: Mon Jul 22 16:43:14 2013 +0200 Make sure the graph object gets updated upon changing the value of the X or Y parameter (#31). commit 459153fd8e366ae9222c4edf24e64a47f558f431 Author: Alan Garny Date: Mon Jul 22 16:04:59 2013 +0200 Can now '\''properly'\'' add a graph '\''manually'\'' (#31). commit 3e2fd9e11c3673b31b1326838f1a01e394a338e4 Author: Alan Garny Date: Mon Jul 22 15:13:07 2013 +0200 Some minor cleaning up. commit cef0a51dd0a5e78fd61718a853a70337b7e1e190 Author: Alan Garny Date: Mon Jul 22 14:40:30 2013 +0200 Can now '\''manually'\'' add a graph (#31). commit f3cc5cef2d87e60a3b30cc878d935611fd151ccb Author: Alan Garny Date: Mon Jul 22 13:55:48 2013 +0200 Some work on the context menu for our graphs property editor (#31). commit 22c403541337facc65542d5d6ea236582344b656 Author: Alan Garny Date: Mon Jul 22 12:55:58 2013 +0200 Minor improvement to our tree view widget. commit d808661cd4013c2e1d11d639fd346fce1ab86ca0 Author: Alan Garny Date: Mon Jul 22 10:36:03 2013 +0200 Fixed a QSettings issue with OS X. commit 0a1606925024f5f8f333ff8efe587d2ffbac13be Author: Alan Garny Date: Sat Jul 20 11:20:09 2013 +0200 Some minor cleaning up. commit d5042e7a8d5bc07268a4e64833cb153644ca5c68 Author: Alan Garny Date: Fri Jul 19 18:13:07 2013 +0200 Started some work on a general context menu for our graphs property editor (#31). commit cc3956f3f756526f1fd1a1e6391a5543b6f769bb Author: Alan Garny Date: Fri Jul 19 17:42:13 2013 +0200 Started some work on a general context menu for our graphs property editor (#31). Also removed our "There are no graphs…" message. commit 218bab435cd1fdb5dd6fb3066992573ee9989564 Author: Alan Garny Date: Fri Jul 19 17:01:47 2013 +0200 Slight improvement to our tree view widget. commit 7c3dc590b4d7a72a53feefd47e2604350f5f9a0a Author: Alan Garny Date: Fri Jul 19 16:41:43 2013 +0200 Some minor cleaning up (#31). commit ef7b6a8a170d27d96d0273fffeaa1da1c741ead2 Author: Alan Garny Date: Fri Jul 19 16:30:02 2013 +0200 Fixed an issue with setting the value of a model property directly (#31). commit 7d0c0b5ef3aab201b3a53e11890c6e8089262194 Author: Alan Garny Date: Fri Jul 19 14:54:36 2013 +0200 Slight improvement to our graphs property editor (#31). commit 5b504bf6dcc97d8c9297a78553d26dd92528e635 Author: Alan Garny Date: Fri Jul 19 14:12:36 2013 +0200 Slight improvement to our property editor widget. commit 035307c5401d3a95b94b70c38b0142fd172ecc8e Author: Alan Garny Date: Fri Jul 19 13:57:04 2013 +0200 Can now update a graph'\''s parameter value through a custom context menu (#31). commit 51792e17037b700f8d516cb01c359fb4c2a13888 Author: Alan Garny Date: Fri Jul 19 13:46:16 2013 +0200 Some minor cleaning up (#31). commit 85ff79e68c25e6748d5c0ccc136e463599cfccb5 Author: Alan Garny Date: Fri Jul 19 13:03:01 2013 +0200 Some minor refactoring (#31). commit 628236de28b8c36797804910f14f9ecfc348e1f9 Author: Alan Garny Date: Fri Jul 19 11:19:41 2013 +0200 Some minor refactoring (#31). commit d0d0e6cf6fd6a0edaef8c9a3e3391dc4a5cfb2a6 Author: Alan Garny Date: Fri Jul 19 11:19:10 2013 +0200 Don'\''t keep track of which graph panel used to be active (#31). We will re-enable this the day we also keep track of the required graphs. commit c121005e10476d93e0c0534c1ffa41ba3c964330 Author: Alan Garny Date: Fri Jul 19 10:33:37 2013 +0200 Can now handle the properties of a graph that involves a parameter with a non-zero degree (#31). commit cc9fec409814c3b1f8b89b872fb2cd25142efd95 Author: Alan Garny Date: Fri Jul 19 10:33:05 2013 +0200 Some minor cleaning up. commit 83979a6dcd8d8ee4a657effb00df0fe50fdd3745 Author: Alan Garny Date: Fri Jul 19 08:51:17 2013 +0200 Fixed a minor issue with retranslating our graphs property editor (#31). commit dea60a206c8c97db3232a99f8f73e1239454fdd9 Author: Alan Garny Date: Thu Jul 18 18:51:13 2013 +0200 Fixed a QtWebKit-related issue (closes #206). commit c1a260f02bd3f54a3bd7d7fe8d6166b5abb027cd Author: Alan Garny Date: Thu Jul 18 18:34:43 2013 +0200 Can now lock a graph to a particular model and everything will be fine if the file gets renamed or the locale gets changed (#31). commit da3c5c3439dc2eeae721b9bf0e95feb89e15b3e5 Author: Alan Garny Date: Thu Jul 18 16:55:23 2013 +0200 Some minor cleaning up. commit e3b05e46119e11286fc42c92b34093ce992c463a Author: Alan Garny Date: Thu Jul 18 16:49:05 2013 +0200 Improved our Core::getSaveFileName() method. commit 3f3d4810c79b516b7c8637b3b6f65bf263eb4bff Author: Alan Garny Date: Thu Jul 18 16:23:59 2013 +0200 Some minor cleaning up. commit 71458276cde846c094be786778fc423dbb5f349e Author: Alan Garny Date: Thu Jul 18 15:46:13 2013 +0200 Can now save an unmodified file under a new name which is already used for an existing file (closes #215). commit bf583e1336f9cc61d94120b7ae5bfe92855e6fa3 Author: Alan Garny Date: Thu Jul 18 15:27:48 2013 +0200 Some work on our graphs property editor (#31). commit 03108c0e827b5cbc990cf6038e2173edd1c5f8c2 Author: Alan Garny Date: Thu Jul 18 15:07:24 2013 +0200 Slight improvement to our property editor. commit ee0d7158ef9cdb3db391d13527034208d4257a51 Author: Alan Garny Date: Thu Jul 18 13:07:59 2013 +0200 Some work on our graphs property editor (#31). commit 76fbd2840ff69f25416ed8ecbc84314291b1ef9d Author: Alan Garny Date: Thu Jul 18 12:59:52 2013 +0200 Some work on our graphs property editor (#31). commit c6c298491ecaff8c4bb2737ac762be0ad2c20d3c Author: Alan Garny Date: Thu Jul 18 11:51:29 2013 +0200 Fixed our Saving As of an unmodified file (closes #214). commit 62982867e9fa79af8689d4b8eb03be64a9dde08c Author: Alan Garny Date: Thu Jul 18 11:35:39 2013 +0200 Minor fix to our property editor. commit 19c8c417b8276a6a8a724a5eac8565ed6859b182 Author: Alan Garny Date: Thu Jul 18 10:55:10 2013 +0200 Some work on our graphs property editor (#31). commit 1e2ebeaa19db79512cfb5ee9dbe81d78fe82012f Author: Alan Garny Date: Thu Jul 18 10:54:50 2013 +0200 Can now create a property editor with no unit column (closes #213). commit 0916e7e1734453a726bd571a7caac5ce6b30fad4 Author: Alan Garny Date: Wed Jul 17 19:39:28 2013 +0200 Some minor cleaning up. commit 733a5c1ba6d3671ebf1a77c7b28d50496be22963 Author: Alan Garny Date: Wed Jul 17 19:39:23 2013 +0200 Minor fix to our list of recent file names after we have renamed a file. commit 18c666134b5fa1e1e1413c29cd349864b3b6f25d Author: Alan Garny Date: Wed Jul 17 19:29:42 2013 +0200 Some work on our graphs property editor (#31). commit 84f77738682e8ea850c32422b194b61a1a4880c0 Author: Alan Garny Date: Wed Jul 17 18:56:51 2013 +0200 Can now rename an unmodified file (closes #211). commit edfb51fbc294bff4910b33dbb4d3e1e830630980 Merge: 0803d39d2 f5181b000 Author: Alan Garny Date: Wed Jul 17 07:45:18 2013 -0700 Merge pull request #212 from opencor/issue31 Some work mainly towards issue #31. commit f5181b0003550d96b0243b1d6974a47ed603a2cc Author: Alan Garny Date: Wed Jul 17 16:43:34 2013 +0200 Minor comment. commit f5b4e486085bb6fe5b9cb5a38c6d7b8e136c5fd7 Author: Alan Garny Date: Wed Jul 17 16:27:17 2013 +0200 Some minor improvement to our property editor widget. commit 9f5380eafc5439a4a2fa4557d90122a12dcc7a18 Author: Alan Garny Date: Wed Jul 17 16:04:04 2013 +0200 Some minor cleaning up. commit 5d94facd6ba7a2592950261d688e379343fed906 Author: Alan Garny Date: Wed Jul 17 15:28:13 2013 +0200 Some work on our graphs property editor (#31). commit 912fe8885e5ad7abc0f6682083ad5ec12d884b51 Author: Alan Garny Date: Wed Jul 17 14:42:17 2013 +0200 Some work on our graphs property editor (#31). commit 3a699d71ed4f054193d0afccfd9becae4e453f14 Author: Alan Garny Date: Wed Jul 17 14:02:39 2013 +0200 Some work on our graphs property editor (#31). commit 09d57fdbfd868d85ed253c930d769fcf26620243 Author: Alan Garny Date: Wed Jul 17 11:24:37 2013 +0200 Some work on our graphs property editor (#31). commit 7c6f3823271f8f7b1f8892ccb5b8f84ec5276778 Author: Alan Garny Date: Wed Jul 17 10:51:55 2013 +0200 Some work on our graphs property editor (#31). commit 0bc720aaf4d968b1f8e56cea7c97ec484afd795d Author: Alan Garny Date: Wed Jul 17 10:20:49 2013 +0200 Some work on our graphs property editor (#31). commit e9ad500bfc68deca994c33d7ab83522b8a9f92a0 Author: Alan Garny Date: Wed Jul 17 09:49:45 2013 +0200 Some work on our graphs property editor (#31). commit 8421ac0a40a5971fafba19ba8b8ebde3e0cbdb8b Author: Alan Garny Date: Tue Jul 16 18:51:02 2013 +0200 Some work on our graphs property editor (#31). commit d03902c8aacc41f85076fb2d36c40364c38a83c3 Author: Alan Garny Date: Tue Jul 16 18:44:30 2013 +0200 Improved our GUI interface so that plugins can be told about a file being opened, saved, renamed and closed. commit c3561fc9de556734ed42de7922c0cf4905000969 Author: Alan Garny Date: Tue Jul 16 18:00:10 2013 +0200 Improved our GUI interface so that plugins can be told about a file being opened, saved, renamed and closed. commit daac5da354c069f028915c7b0ff5e4469961b4b1 Author: Alan Garny Date: Tue Jul 16 15:01:06 2013 +0200 Some work on our graphs property editor (#31). commit 86a153819a83a74ddc34dc6e39bfbbdcb9dbc799 Author: Alan Garny Date: Mon Jul 15 18:56:38 2013 +0200 Some work on our graphs property editor (#31). commit f760bb62095673213f23e016288ace50653c2823 Author: Alan Garny Date: Mon Jul 15 16:59:00 2013 +0200 Minor fix for the list editor of our property editor (#31). commit 4e3996ad34b1a5312efe23f245b55c3606a10319 Author: Alan Garny Date: Mon Jul 15 15:40:52 2013 +0200 Some work on our property editor to support lists with separators (#31). commit 5fdd51845db40827892d2be7549ee957626d3af0 Author: Alan Garny Date: Fri Jul 12 15:05:04 2013 +0200 Simulation: added some icons for our graphs property editor (#31). commit a7c56e27cbeee3e0e6d54ec6eaf5428f5be1ad4a Author: Alan Garny Date: Fri Jul 12 14:49:31 2013 +0200 QTreeViewWidget: removed the mouse double-click handling. We were originally trying to address an issue with double-clicking on a checkbox which would expand/collapse a graph property (in the simulation view) and that was because of our handling a mouse double-click. It was probably handled because of something else preventing a mouse double-click from working? Whatever the case, mouse double-clicking expands/collapses a property unless it'\''s done over a check box, in which case it will just change the check box state. commit f34e7dcb88b0f5dd362a72ee30a015e65bce7b47 Merge: b78556180 0803d39d2 Author: Alan Garny Date: Fri Jul 12 14:30:54 2013 +0200 Merge branch '\''master'\'' into issue31 commit 0803d39d2f02a37c26e9ffd394d3e48497957992 Author: Alan Garny Date: Fri Jul 12 14:29:42 2013 +0200 Upgrade jQuery from version 1.10.1 to version 1.10.2. commit b78556180f500f73c0a73cab34be87b14c66d81c Author: Alan Garny Date: Fri Jul 12 14:18:50 2013 +0200 Make a graph section checkable (and checked by default) (#31). commit 57edd87f9844f6e6f45c86fb85570582f317af64 Author: Alan Garny Date: Fri Jul 12 13:44:49 2013 +0200 Simulation: fixed a small issue with our progress bar tab icon (closes #210). commit 92bbed22784e941dbcb83a42fedb217af0fbfea4 Author: Alan Garny Date: Fri Jul 12 13:34:53 2013 +0200 Some major refactoring of our property editor widget. Also, some improvements here and there. This now needs '\''proper'\'' testing. commit 7421ce2d596c4a5eca118db300b30c216c5d6cee Author: Alan Garny Date: Wed Jul 10 16:59:58 2013 +0200 Some minor refactoring (#31). commit 9383c06595276afc53f22917e63a8bd8012aaa63 Author: Alan Garny Date: Wed Jul 10 14:34:24 2013 +0200 Some minor cleaning up. commit 75f7b5186c0f05df898951d141077f55ad70a84d Author: Alan Garny Date: Wed Jul 10 13:44:41 2013 +0200 Keep track of the size of the columns of our graphs panel (#31). commit 05afc67179b7ef98ee0bbf5f95d2ce4dab73f2c6 Author: Alan Garny Date: Wed Jul 10 13:08:24 2013 +0200 Some minor cleaning up. commit 5fc51cd21a278f7481053e02de6dec5c5a0446b0 Author: Alan Garny Date: Wed Jul 10 13:03:08 2013 +0200 Some minor refactoring (#31). commit 7482150d77491c0115060639035367a5b998d3d5 Author: Alan Garny Date: Wed Jul 10 11:53:00 2013 +0200 Some minor refactoring (#31). commit e11b9edc110067664b26c8b1a3f4a5a92034a9b1 Author: Alan Garny Date: Wed Jul 10 11:45:37 2013 +0200 Some minor refactoring (#31). commit cd52c27a5032c9f384765215eea7a0a6140769e4 Author: Alan Garny Date: Wed Jul 10 11:44:22 2013 +0200 Some minor refactoring (#31). commit 2a41a8a5ea45a082e0912d25797337f0a6874eff Author: Alan Garny Date: Wed Jul 10 11:17:44 2013 +0200 Some minor refactoring (#31). commit 07073f7a21620055890b5fc927dc3264db3d9f77 Author: Alan Garny Date: Wed Jul 10 11:13:46 2013 +0200 Some minor refactoring (#31). commit 2a5af5b395c053242c834d68afab72d2af23ab6c Author: Alan Garny Date: Wed Jul 10 11:07:02 2013 +0200 Some minor cleaning up and refactoring (#31). commit c0ca68e21093fb99ca637feae0b1c2fa61fda618 Author: Alan Garny Date: Wed Jul 10 10:14:07 2013 +0200 Slight updates to our user documentation (following the removal of the midpoint solver). commit ab413d33dbbd90c337131fc15e54358a08befd70 Author: Alan Garny Date: Wed Jul 10 10:07:40 2013 +0200 Slight updates to our user documentation (following the removal of the midpoint solver). commit 3db6ed42744f7d7cae84a52e557b5a75c3bc3d4a Author: Alan Garny Date: Wed Jul 10 10:00:48 2013 +0200 Updated our VOI icon (#31). commit aa5a14c4a22e501c513ea8d75d0b8096db4224c3 Author: Alan Garny Date: Tue Jul 9 18:35:16 2013 +0200 Some work on our single cell simulation plugin (#31). commit 47243af59be8cc161edb156d10d2f6d2fc12825d Author: Alan Garny Date: Tue Jul 9 18:14:59 2013 +0200 Some work on our single cell simulation plugin (#31). commit 74360836bb0a553791715fc6548d352a63209894 Author: Alan Garny Date: Tue Jul 9 16:22:19 2013 +0200 Some work on our single cell simulation plugin (#31). commit f4632a2a03ddb564e3156c935fd0989302fb9e18 Author: Alan Garny Date: Tue Jul 9 15:01:45 2013 +0200 Some minor cleaning up. commit 937a0b9aec15a505bfc9d2e939b9a556cec500e8 Author: Alan Garny Date: Tue Jul 9 13:29:09 2013 +0200 Some work on our single cell simulation plugin (#31). commit 54c2e0b7185d49a27743ca9e328d6bbf29c905fc Author: Alan Garny Date: Tue Jul 9 11:26:57 2013 +0200 Some work on our single cell simulation plugin (#31). commit dc02b0ae4261a25e6f0b28ad780062a8167ee74a Author: Alan Garny Date: Mon Jul 8 18:12:13 2013 +0200 Some work on our single cell simulation plugin (#31). commit 3d7e9b5842cbfc3ee14030fbc947312bbfb19bce Author: Alan Garny Date: Mon Jul 8 16:44:27 2013 +0200 Some work on our single cell simulation plugin (#31). commit 80f695cc1f1b4276dd35d622936d351e0b72f741 Author: Alan Garny Date: Mon Jul 8 16:27:48 2013 +0200 Some work on our single cell simulation plugin (#31). commit d9d9d7210ac1bc4a76091b7ea8af8cbe99266a3e Author: Alan Garny Date: Mon Jul 8 15:30:05 2013 +0200 Some work on our single cell simulation plugin (#31). commit bebf3e87b10f937dde215be8ff4b245a0595103f Author: Alan Garny Date: Mon Jul 8 15:24:19 2013 +0200 Some work on our single cell simulation plugin (#31). commit 1ed9fc1b7aaf33e66593234e5ca4eb9512b609c7 Author: Alan Garny Date: Mon Jul 8 14:35:03 2013 +0200 Some work on our single cell simulation plugin (#31). commit ec8157a5d5f00416b448cf5c085996e069043e41 Author: Alan Garny Date: Mon Jul 8 11:55:10 2013 +0200 Some work on our single cell simulation plugin (#31). commit e5a34336fe7585f51993849a733c9c6bd0d99cc6 Author: Alan Garny Date: Mon Jul 8 10:34:00 2013 +0200 Some work on our single cell simulation plugin (#31). commit 1c3864400960c212bc934a022fb2506b2d1628e0 Author: Alan Garny Date: Mon Jul 8 10:29:54 2013 +0200 Some work on our single cell simulation plugin (#31). commit 251c65547df3a80b3148b35c02627278fd2c5be4 Merge: cfd671ceb d4d9e8b91 Author: Alan Garny Date: Sat Jul 6 22:44:45 2013 +0200 Merge branch '\''master'\'' into issue31 commit d4d9e8b91ef9e8733257392e83e08f5d8ecd5999 Author: Alan Garny Date: Sat Jul 6 22:41:06 2013 +0200 Removed the midpoint ODE solver since it'\''s the same as RK2 (closes #209). commit cfd671cebf49bcb54ab898cdbc50a261a70a40f6 Merge: 7dc24a293 795acd119 Author: Alan Garny Date: Fri Jul 5 18:40:39 2013 +0200 Merge branch '\''master'\'' into issue31 commit 795acd1194bca23c87423f52bebbfd476d713937 Author: Alan Garny Date: Fri Jul 5 18:40:16 2013 +0200 Slight updates to our user documentation. commit 7dc24a293fe20fd83247de2d55850f39030c0d9b Merge: 2b9284971 b833ae084 Author: Alan Garny Date: Fri Jul 5 18:14:00 2013 +0200 Merge branch '\''master'\'' into issue31 commit b833ae084e0392eaeb048ec9728fcbde21e3dca4 Author: Alan Garny Date: Fri Jul 5 18:12:52 2013 +0200 Simulation plugin: made sure that we don'\''t emit signal in our main simulation loop (closes #208). commit c17858cf16ffd9a6f0a41c2b401448078dff9d02 Author: Alan Garny Date: Fri Jul 5 17:01:42 2013 +0200 Simulation plugin: improved the speed with which we check that constants and/or states have been modified. commit 2b9284971ce55067e22a432e902b2fbc7e9ef13f Merge: 0f3fe5170 2c09af2ac Author: Alan Garny Date: Fri Jul 5 14:08:37 2013 +0200 Merge branch '\''master'\'' into issue31 commit 2c09af2acf1199f61f89337fd9f037aea5854f0e Author: Alan Garny Date: Fri Jul 5 14:00:14 2013 +0200 Updated our LLVM binaries (following the release of Qt 5.1). commit 0f3fe5170cccf20e3a179a7137bf2adb4620538a Merge: e69ac7b7a ce5cfa43d Author: Alan Garny Date: Thu Jul 4 19:46:45 2013 +0200 Merge branch '\''master'\'' into issue31 commit ce5cfa43d74dbc7a48b5e873031a8442755397ca Author: Alan Garny Date: Thu Jul 4 19:46:24 2013 +0200 Minor update to our user documentation. commit e69ac7b7aefaa4cc463caf742d687c713e87e5f2 Merge: 0af80a9ee 94187e024 Author: Alan Garny Date: Thu Jul 4 19:44:51 2013 +0200 Merge branch '\''master'\'' into issue31 commit 94187e0247906e685c4efa5d26e7ff7db0c6ba66 Author: Alan Garny Date: Thu Jul 4 19:43:22 2013 +0200 Some minor improvement to our File|Quit menu. commit 0af80a9ee2cf03b8a2f42e95ae2e315242920fe5 Merge: e0150684a 90f0c8ee6 Author: Alan Garny Date: Thu Jul 4 19:28:51 2013 +0200 Merge branch '\''master'\'' into issue31 commit 90f0c8ee6fbdc575de128d6e6df062216586f637 Author: Alan Garny Date: Thu Jul 4 19:26:07 2013 +0200 Revert "Minor improvements to our Help and CellMLModelRepository windows following the release of Qt 5.1." This reverts commit 3d643300434770e21d4b433b0b72391106d77a44. commit 3d643300434770e21d4b433b0b72391106d77a44 Author: Alan Garny Date: Thu Jul 4 19:21:31 2013 +0200 Minor improvements to our Help and CellMLModelRepository windows following the release of Qt 5.1. commit 08deffbfdd92cf61b66e7bb4dc692c4e4a1688bb Author: Alan Garny Date: Thu Jul 4 19:12:30 2013 +0200 Fixed the issue with some special menu items on OS X (closes #163). commit ae9b3d9340ea69e565c55211982cc9fd520f9bd7 Author: Alan Garny Date: Thu Jul 4 18:50:44 2013 +0200 Implemented a workaround to address an issue that got introduced with Qt 5 on OS X (closes #138). commit e0150684ab93a4d56a0fbb7dc7061cb865eb421d Merge: 5379c7f84 a60e5bee0 Author: Alan Garny Date: Thu Jul 4 17:59:40 2013 +0200 Merge branch '\''master'\'' into issue31 commit a60e5bee0a5e229a845ca5509d42f91fa8b67526 Author: Alan Garny Date: Thu Jul 4 17:57:24 2013 +0200 Updated our main CMakeLists.txt files so that OpenCOR can be properly built on Windows using Qt 5.1. commit 5379c7f84fed602b4e0d6f70d44c868c5c759c6b Merge: 87a7df3fb 1ad18f14c Author: Alan Garny Date: Thu Jul 4 17:44:15 2013 +0200 Merge branch '\''master'\'' into issue31 commit 1ad18f14c22a2cf3ff1cfcba2b477355188ddf13 Author: Alan Garny Date: Thu Jul 4 17:36:50 2013 +0200 Updated some of our CMake files so that OpenCOR can be properly built on Linux and OS X using Qt 5.1. commit 3f702d0fdfcbc171b9c12d56898f98808a97f47c Author: Alan Garny Date: Thu Jul 4 14:52:07 2013 +0200 Slight update to the developer documentation (following the release of Qt 5.1). commit d9383497642dc457558b06d45bbd30eb95a3cdfd Author: Alan Garny Date: Thu Jul 4 13:22:51 2013 +0200 Updated our main CMakeLists.txt file so that we can build OpenCOR on Ubuntu using Qt 5.1. commit 203ae9fc17af1e8077acf06646858ebcae10ace4 Author: Alan Garny Date: Thu Jul 4 10:27:26 2013 +0200 Minor improvements to our developer documentation (following the release of Qt 5.1). commit 87a7df3fbc7ee1c4949f4f6a3f58c1f4a0eadf8a Merge: 24383fd58 08109b303 Author: Alan Garny Date: Wed Jul 3 19:09:33 2013 +0200 Merge branch '\''master'\'' into issue31 commit 08109b303d282b6bb024c66be9bccd9b5d3273bc Author: Alan Garny Date: Wed Jul 3 19:08:38 2013 +0200 Updated the CMakeLists.txt file for our Windows CLI version of OpenCOR. commit 24383fd58420c75b213271519632bf58bf3a5c0a Merge: b6f1d4faa 49806b61d Author: Alan Garny Date: Wed Jul 3 18:50:37 2013 +0200 Merge branch '\''master'\'' into issue31 commit 49806b61d4378969e1502d2ebf46d6ddf1e3d3e6 Merge: c26fb8cfc 43562c167 Author: Alan Garny Date: Wed Jul 3 18:44:18 2013 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit c26fb8cfc0707d291c95fda7dba5bf7aeca59be9 Author: Alan Garny Date: Wed Jul 3 18:43:30 2013 +0200 Fixed the QtWebKit memory '\''leaks'\'' issue (closes #141). commit 8adbb58579de71f0cb834aceb50888a99209ba5e Author: Alan Garny Date: Wed Jul 3 18:17:38 2013 +0200 Updated the developer documentation and our main CMakeLists.txt (the Windows bit of it) following the release of Qt 5.1. commit b6f1d4faa73e0de0eec07f7b229aaf332b14903c Merge: 61725f70a 43562c167 Author: Alan Garny Date: Tue Jul 2 18:22:18 2013 +0200 Merge branch '\''master'\'' into issue31 commit 43562c16762accf0dabcea86f5d85a91a3138c60 Author: Alan Garny Date: Tue Jul 2 18:21:49 2013 +0200 Revisited our policy on enabling/disabling menus. The idea is that a menu should always be enabled. It'\''s just its items which should be enabled/disabled as needed. commit 61725f70a798d49fa9804d6d8c5e4f2b4ffdb22e Author: Alan Garny Date: Tue Jul 2 18:11:35 2013 +0200 Some minor cleaning up. commit 8f15fc20a08e01dabcf500d55eeb1c96023afbb9 Author: Alan Garny Date: Tue Jul 2 18:07:56 2013 +0200 Some work on our CellMLModelRepository plugin (#204). commit 9cc80676b00ccaa2b69fe677415f3cbbb2b3b5ca Merge: af5513ef8 562b11a62 Author: Alan Garny Date: Tue Jul 2 16:26:45 2013 +0200 Merge branch '\''master'\'' into issue31 commit 562b11a6226299ff975b195e3a9f69c28e027a2d Author: Alan Garny Date: Tue Jul 2 16:25:56 2013 +0200 Fixed a small GUI issue with our File|Reopen menu. commit 5551fddf5c5c920c19489eff9542a402577b4eb2 Author: Alan Garny Date: Tue Jul 2 16:12:12 2013 +0200 CellMLTools plugin: enable/disable our CellML File Export menu based depending on whether some exports are enabled. commit d60fa424cd4c7de008a8824f2519a27e37944fb7 Author: Alan Garny Date: Tue Jul 2 15:56:51 2013 +0200 CellMLTools plugin: enable/disable our CellML File Export menu based depending on whether some exports are enabled. commit af5513ef863581ca9d2141db4d6f6379db9e77c6 Merge: 5041dd535 fa547aba4 Author: Alan Garny Date: Mon Jul 1 18:12:03 2013 +0200 Merge branch '\''master'\'' into issue31 commit fa547aba44b69720d294229da909d13b24e34062 Author: Alan Garny Date: Mon Jul 1 18:11:24 2013 +0200 Fixed a small issue that would make a saved CellML file unrecogniseable by any view. commit 5041dd535d4ee04400c44a0f5ed2b9985543af56 Author: Alan Garny Date: Fri Jun 28 18:02:40 2013 +0200 Some minor refactoring. commit 32910b49856bb2c8c0428757ec0f2d1e0938ce10 Author: Alan Garny Date: Fri Jun 28 17:48:05 2013 +0200 Some work on our CellMLModelRepository plugin (#204). commit 3836d9449f2848a2657d3c581b0c567a32f8831a Author: Alan Garny Date: Fri Jun 28 16:37:14 2013 +0200 Some work on our CellMLModelRepository plugin (#204). commit 49e2d8657c2c664aa867dfc3ac230f2e8a8485b7 Author: Alan Garny Date: Fri Jun 28 16:13:11 2013 +0200 Some minor cleaning up. commit 43e483fad20f17f54becddd9d0904172c9987291 Merge: 2e518c632 c1895ea5a Author: Alan Garny Date: Fri Jun 28 16:10:15 2013 +0200 Merge branch '\''master'\'' into issue31 commit c1895ea5a7279a93061a002dbd8a8f32535b239a Author: Alan Garny Date: Fri Jun 28 16:09:58 2013 +0200 Some minor cleaning up. commit 2e518c6323913e74cad923ebeda621d6bd7dda7a Author: Alan Garny Date: Fri Jun 28 16:05:56 2013 +0200 Some minor cleaning up. commit cf07643ef0e4f169df65f908ea70419b73181a16 Merge: 54e3eb92e 965b88093 Author: Alan Garny Date: Fri Jun 28 15:51:59 2013 +0200 Merge branch '\''master'\'' into issue31 commit 965b88093cddf45f8573166df0cfcc34342ed655 Author: Alan Garny Date: Fri Jun 28 15:49:49 2013 +0200 Some minor cleaning up. commit 54e3eb92e580c4d8f8e593c738a3f3a01644d1fc Author: Alan Garny Date: Fri Jun 28 15:47:36 2013 +0200 Some work on our CellMLModelRepository plugin (#204). commit 61405be261a1d2a41bf57f2be7e22c627137ff99 Merge: 4446521dc 7bc45ed5e Author: Alan Garny Date: Fri Jun 28 15:11:36 2013 +0200 Merge branch '\''master'\'' into issue31 commit 7bc45ed5e633e73059ce82199d921afbf891ad27 Author: Alan Garny Date: Fri Jun 28 14:45:53 2013 +0200 Some minor cleaning up. commit a20e0b7fda4ab7ee0093c2c0ccdda2cc2adea093 Author: Alan Garny Date: Fri Jun 28 13:28:23 2013 +0200 Some minor cleaning up. commit 4446521dc3237e2ce56159bcc040ec29672a0a95 Author: Alan Garny Date: Thu Jun 27 18:18:52 2013 +0200 Some minor work on our CellMLModelRepository plugin (#204). commit e6825075be46eff4ceeebab8a6198e82d82d1fcc Merge: 4a0f75012 2ead8f6c1 Author: Alan Garny Date: Thu Jun 27 17:25:00 2013 +0200 Merge branch '\''master'\'' into issue31 commit 2ead8f6c11b12644a5bff22cf653b93838ccaa02 Author: Alan Garny Date: Thu Jun 27 17:24:11 2013 +0200 Some minor cleaning up. commit 4a0f7501216b8c76ae567f3ca31d9480f8fc145b Author: Alan Garny Date: Thu Jun 27 17:12:35 2013 +0200 Minor cleaning up. commit ad2149b56446904f6eff09e9dd2f2573372560b0 Author: Alan Garny Date: Thu Jun 27 17:07:05 2013 +0200 Some minor work on our CellMLModelRepository plugin (#204). commit b31bf69746838554be498d5ffc8e93157ec452aa Merge: 20c1aea04 be46464ee Author: Alan Garny Date: Wed Jun 26 17:33:04 2013 +0200 Merge branch '\''master'\'' into issue31 commit be46464ee509990315a6cdfd414358b48b8346df Author: Alan Garny Date: Wed Jun 26 17:32:27 2013 +0200 Some minor cleaning up. commit 20c1aea046267d2ef8fd8346bfd34b05c9c542ee Merge: 4378e1b95 d90437b11 Author: Alan Garny Date: Wed Jun 26 15:11:07 2013 +0200 Merge branch '\''master'\'' into issue31 commit d90437b111eda64303efecfc5e1213212bf0699c Author: Alan Garny Date: Wed Jun 26 15:10:47 2013 +0200 Some minor cleaning up. commit 4378e1b95a527a7ec0b00aeb68cddf8929f7d6d2 Author: Alan Garny Date: Wed Jun 26 15:08:10 2013 +0200 Some minor work on our CellMLModelRepository plugin (#204). commit 31567bf78b9238c2132875998841ac4ff7d6b2c5 Merge: 23c12bc80 7e49bc242 Author: Alan Garny Date: Wed Jun 26 14:15:51 2013 +0200 Merge branch '\''master'\'' into issue31 commit 7e49bc242b6e97430950b59878a476a22edce1a2 Author: Alan Garny Date: Wed Jun 26 13:30:36 2013 +0200 OS X: can now resume from full scree mode by pressing the Escape key (closes #205). commit 23c12bc808bbf9ef5a3af43773901049f1791ec9 Author: Alan Garny Date: Tue Jun 25 18:16:45 2013 +0200 Make sure that right-clicking on the mouse doesn'\''t start the editing of a property (#31). commit c3ae97394bdba8589e384a1636c9b5f5d6ac1d25 Author: Alan Garny Date: Tue Jun 25 16:50:11 2013 +0200 Some cleaning up for our forthcoming work on supporting the plotting of simulation results against any model parameter (#31). commit 8580db54b2ac9ef675d285542f6082809676e382 Author: Alan Garny Date: Tue Jun 25 13:39:05 2013 +0200 Done with improving our CellMLModelRepository plugin (closes #204). commit 1c4fbbedfaf3dea61bfaf3db1aee0a261a6a69f9 Author: Alan Garny Date: Tue Jun 25 13:11:05 2013 +0200 Some work on our CellMLModelRepository plugin (#204). commit b3db75bffeb4af6b4eb7f040eea246da89305d9c Author: Alan Garny Date: Tue Jun 25 11:05:33 2013 +0200 Fixed our main CMakeLists.txt files. The issue was with CMake Policy #0020 which got introduced in CMake 2.8.11 and which automatically links a qtmain.lib to a Windows executable. So far, our different solutions ended up working on some platforms and/or command line / Qt Creator combinations and with CMake 2.8.11 or earlier, but never in all possible combinations. Now, it'\''s all fine! commit 3f0bfb042326b0bed30291f6bf0c9051c37e0d71 Author: Alan Garny Date: Tue Jun 25 00:43:14 2013 +0200 Updated our two main CMakeLists.txt files. Indeed, on Windows at least, to use CMAKE_POLICY(VERSION ${CMAKE_MINIMUM_REQUIRED_VERSION}) is fine from the command line, but not from within Qt Creator (!!). Also, to set the policies in INITIALISE_PROJECT() (so that it can also be used for the Windows CLI version of our CMakeLists.txt file) doesn'\''t work either (!!). commit a51b6fe246bb6bfba88f3c266d970415ba04fee8 Author: Alan Garny Date: Tue Jun 25 00:04:27 2013 +0200 Forgot to remove a debug trace. commit 026a2e2af5f62c8a395af99b173b87ebf134f581 Author: Alan Garny Date: Mon Jun 24 23:51:14 2013 +0200 Minor improvement to our main CMakeLists.txt file. commit 466039c9b588af1f0daff10dff8346175327cb63 Author: Alan Garny Date: Mon Jun 24 10:27:07 2013 +0200 Slight update to our main CMakeLists.txt file. commit c1947b8337698ddf12b1137b5bd331237bae2a3a Author: Alan Garny Date: Sun Jun 23 00:38:41 2013 +0200 Minor improvement to our main CMakeLists.txt files (to handle a new CMake policy that got introduced in CMake 2.8.11). commit 2297e8cf016d53d52bf9ce0fdea2c4fcfa08224a Author: Alan Garny Date: Sat Jun 22 13:28:45 2013 +0200 New snapshots. commit cffa841453224b642b10e7c7acb7a46d63199dfd Merge: ff34fd831 a98086ef2 Author: Alan Garny Date: Sat Jun 22 04:09:23 2013 -0700 Merge pull request #203 from opencor/llvm_3.3 Upgrade to LLVM 3.3 (closes #202). commit a98086ef2efa16bd654ecbe34d7e65fd8493cb43 Author: Alan Garny Date: Sat Jun 22 12:30:55 2013 +0200 Generated binaries for LLVM 3.3 and updated our CMakeLists.txt file to make use of them (#202). commit 48b26cb37c7a9d2e9d2a722c347a146e17d3df0a Author: Alan Garny Date: Sat Jun 22 11:31:47 2013 +0200 Make it possible to build LLVM 3.3 on Linux (#202). Some minor cleaning up. commit 03256504809aed124dff2daefa839c620d833ffd Author: Alan Garny Date: Sat Jun 22 11:15:27 2013 +0200 Can now build LLVM 3.3 on Windows in debug mode (#202). commit 8584ce835ec2f302ab4b39e2ad4b0b0730e8b348 Author: Alan Garny Date: Sat Jun 22 10:32:51 2013 +0200 Some minor cleaning up. commit ff34fd8312f56f2e45032c0b479e1313f75d6d6f Author: Alan Garny Date: Sat Jun 22 01:19:35 2013 +0200 Minor update to the user documentation. commit b6a8dab892c1512f7e64d4e90ae772a2821eb156 Author: Alan Garny Date: Sat Jun 22 01:07:10 2013 +0200 Can now build LLVM 3.3 on Windows (#202). commit 629c53332d8fdb4748dc63e8fbd5ab02c5c76e03 Author: Alan Garny Date: Fri Jun 21 18:41:35 2013 +0200 Fixed an issue with LLVM itself. commit 93a9cdce841fafea3c99a75e79efe511ac081525 Author: Alan Garny Date: Fri Jun 21 17:26:25 2013 +0200 Some minor updates to our user documentation. commit 92ccad99d90416e8e2eca0fecf84885df28f8819 Merge: 62affdcd0 23b746f51 Author: Alan Garny Date: Fri Jun 21 16:45:34 2013 +0200 Merge branch '\''master'\'' into llvm_3.3 commit 23b746f514a97f638a9e9947b392ab046776b64a Author: Alan Garny Date: Fri Jun 21 16:45:09 2013 +0200 Some minor cleaning up. commit 62affdcd025e7f1cb86c6a3a087ac92b31fa3312 Merge: 27cface2f 5fbcb392a Author: Alan Garny Date: Fri Jun 21 15:08:48 2013 +0200 Merge branch '\''master'\'' into llvm_3.3 commit 5fbcb392a61c3f0daa7c5c255be2eaeb3996c7dd Author: Alan Garny Date: Fri Jun 21 15:02:23 2013 +0200 Slight update to the user documentation. commit 27cface2f644f4b182d729b3ef9ef05d66001343 Merge: 2aba7167f 797a480b5 Author: Alan Garny Date: Fri Jun 21 00:53:46 2013 +0200 Merge branch '\''llvm_3.3'\'' of github.com:opencor/opencor into llvm_3.3 commit 2aba7167f5d83174f21c3ca0a248f61a4cb9db82 Author: Alan Garny Date: Fri Jun 21 00:52:50 2013 +0200 Some minor work on getting LLVM 3.3 to build on Windows (#202). commit 797a480b59cccf07bc5fffc47271955671f9c65f Author: Alan Garny Date: Wed Jun 19 17:52:57 2013 +0200 Some minor cleaning up. commit 17ed3a2c232ab5b0bab4d3b20d5452ffe798476b Author: Alan Garny Date: Wed Jun 19 17:03:23 2013 +0200 Slight update to our compiler tests. Also some minor cleaning up. commit 65bb89646de6aaa7c05d46ea469b635649eaa908 Author: Alan Garny Date: Wed Jun 19 11:49:57 2013 +0200 Some minor cleaning up (#202). commit a95b89a1654eca1f5422c4b88df925f82ebc0611 Author: Alan Garny Date: Wed Jun 19 10:15:47 2013 +0200 Improved our building of LLVM (#202). We can now take advantage of ZLib being present on a user'\''s system. commit a5013b40a77c0c47cc94cfd53f21905be7127c3e Author: Alan Garny Date: Tue Jun 18 20:36:57 2013 +0200 Can now build LLVM 3.3 on OS X (#202). The compiler tests currently fail with: clang: for the -vectorize-loops option: may only occur zero or one times! commit e4f750a976527029e3e56e57bc231a9c6d0194d7 Author: Alan Garny Date: Tue Jun 18 16:20:46 2013 +0200 Upgraded the LLVM distribution from version 3.2 to version 3.3. It doesn'\''t yet build though… commit 6452c1b4aa5f271a0b3b8a80552347da536aa641 Author: Alan Garny Date: Tue Jun 18 11:32:41 2013 +0200 Updated our various LLVM configuration files (#202). commit 6a821d19630cf551aab94385e32c8ad085523607 Author: Alan Garny Date: Tue Jun 18 10:52:06 2013 +0200 Slight updates to our LLVM-related documentation. commit 409c58e75bc8983a72ee947781db1f65a12ab51e Author: Alan Garny Date: Mon Jun 17 14:28:28 2013 +0200 Some minor cleaning up for our RawCellMLView plugin. commit b1808a8edb952349db82ce0c5a5a300e2bdeb119 Author: Alan Garny Date: Mon Jun 17 14:00:00 2013 +0200 Some minor cleaning up. commit 11cbfc1df381f65a5ca391091be02954e0c013e3 Author: Alan Garny Date: Mon Jun 17 13:56:56 2013 +0200 Upgraded QScintilla from version 2.7.1 to version 2.7.2. commit 909918477ff269d82d920ae614d17f160cf5d513 Author: Alan Garny Date: Sat Jun 15 13:38:43 2013 +0200 Minor update to our user documentation. commit e2d630321ed687326e9aca5868b90d793fa3feb2 Author: Alan Garny Date: Sat Jun 15 10:13:55 2013 +0200 Fixed a stupid mistake with the CLI side of our CellMLTools plugin. commit 6cb8f5435deb2340d37ca8f1ab054630de35321b Author: Alan Garny Date: Sat Jun 15 08:44:49 2013 +0200 Some minor cleaning up. commit beae96155462d992cb07d99d24a2c3e00f6b9447 Author: Alan Garny Date: Sat Jun 15 00:42:49 2013 +0200 Some minor cleaning up. commit 2a59bc4bf9d53a3ab4147eba972e491288ba6e90 Author: Alan Garny Date: Fri Jun 14 19:01:31 2013 +0200 Slight improvement to our CLI code. commit 28bf1122b937069ffcccad5617f0f56cc7d754ae Author: Alan Garny Date: Fri Jun 14 18:52:34 2013 +0200 Updated the user documentation (now that our CLI work is done). Also a minor fix to our CellMLTools plugin description. commit 15de8e7611a5549d6fc7aaea360e3c014b7b0ab2 Author: Alan Garny Date: Fri Jun 14 18:32:03 2013 +0200 Minor change to the order of our export command arguments (#199). commit 4bbe320dea7bcae150d57ec5c15627b882a22b62 Author: Alan Garny Date: Fri Jun 14 18:18:14 2013 +0200 Done with our work on our CLI code (closes #199). commit da4f42b158a46119e40e3458a91fbd08bbb84add Author: Alan Garny Date: Fri Jun 14 14:08:40 2013 +0200 Some work on our CLI code (#199). commit e4cf3df7cda3f2a9dd77ff616d98313bd42637ec Author: Alan Garny Date: Fri Jun 14 12:54:56 2013 +0200 Slight improvement to some of our Shell scripts. commit d6285c4ae9060ee6b5e88cce8d14f3b15d3cfa39 Author: Alan Garny Date: Fri Jun 14 10:10:31 2013 +0200 Some work on our CLI code (#199). commit 8f575c72ba8f19213f39644fc657d6aaad7f2a15 Author: Alan Garny Date: Fri Jun 14 09:11:56 2013 +0200 Slight update to the developer documentation. commit 43f075a77bb1847379089ed03e5f231fa4dd2786 Author: Alan Garny Date: Thu Jun 13 17:00:10 2013 +0200 Some work on our CLI code (#199). commit 7c8403b3ad5730e1577fc2e6cced861f544aa4df Author: Alan Garny Date: Thu Jun 13 15:49:14 2013 +0200 Some work on our CLI code (#199). commit d01528846367fd39882fe76b4cc718d0ab91a778 Author: Alan Garny Date: Thu Jun 13 15:47:44 2013 +0200 Some work on our CLI code (#199). commit 20578869ecdca03bee8d8f1fc7746df80fb50822 Author: Alan Garny Date: Thu Jun 13 13:00:02 2013 +0200 Some work on our CLI code (#199). commit afd832d27f5fa2224d297fdd16d04782e8d478e6 Author: Alan Garny Date: Thu Jun 13 11:24:26 2013 +0200 Some work on our CLI code (#199). commit ae5aaedd45eda161e03390c1abcd733169d845fe Author: Alan Garny Date: Thu Jun 13 11:21:34 2013 +0200 Some minor refactoring. commit 79602978f5b5020a2c1f37849a83a6f84460dddf Author: Alan Garny Date: Thu Jun 13 11:06:15 2013 +0200 Some minor refactoring. commit 85f59823f24f31339f518ae2208006ed44e381dd Author: Alan Garny Date: Thu Jun 13 10:30:06 2013 +0200 Some minor cleaning up. commit 5c89c8edfab727007055a5ac3bddba9131829126 Author: Alan Garny Date: Wed Jun 12 19:21:39 2013 +0200 Some minor cleaning up. commit af0f9dda40903ff4de1d53a2311d13f1b53f86d2 Author: Alan Garny Date: Wed Jun 12 18:57:27 2013 +0200 Some work on our CLI code (#199). commit 846755d79958ddc3124a24c7a8c424523e3dc3f4 Author: Alan Garny Date: Wed Jun 12 18:17:41 2013 +0200 Some refactoring for our CLI version (#199). commit d1ae2624d2e329f22e25eeaabeb6579c8c935d00 Author: Alan Garny Date: Wed Jun 12 17:30:52 2013 +0200 Some minor cleaning up. commit b910f24a3161291405108cda0c1cd6e067c103ac Author: Alan Garny Date: Wed Jun 12 16:25:40 2013 +0200 Now zoom in/out around the mouse position (closes #201). Also various improvements and quite a bit of cleaning up of our plotting widget. commit 63e62f11ecaa0b9acba9469a97df7562aad5b926 Author: Alan Garny Date: Wed Jun 12 11:37:21 2013 +0200 Some minor cleaning up. commit 5630683cdbd822a8551a792deacdf0c4bb17d449 Author: Alan Garny Date: Tue Jun 11 17:33:40 2013 +0200 Slight improvement to our plotting widget. commit 34ae059786256951ef9878c9ab7bb129561dccea Author: Alan Garny Date: Tue Jun 11 17:06:39 2013 +0200 Improvements to our plotting widget. commit 9e49da92034e0a50daa0cf8b679210dfd6ed17dc Author: Alan Garny Date: Tue Jun 11 14:50:25 2013 +0200 Minor fix for our plotting widget. commit 1cd53cd5cdcc16cd15a14a7fd4ff53f5d3aa1b4e Author: Alan Garny Date: Tue Jun 11 14:20:23 2013 +0200 Minor fix for our plotting widget. commit 0f079afcecb076fd5864d46a6394a1402ed76853 Author: Alan Garny Date: Tue Jun 11 14:02:49 2013 +0200 Slight improvements to our plotting widget. commit 255087e259f0ea28f9d941a1e133eeb690a5c461 Author: Alan Garny Date: Tue Jun 11 11:43:44 2013 +0200 Slight improvement to our plotting widget. commit 69d7d5d46d6078607fcd0b71544d64e42a037f4a Author: Alan Garny Date: Tue Jun 11 11:32:21 2013 +0200 Some minor cleaning up. commit b1f897b542682381a9b0dc220a22e82af6c64904 Author: Alan Garny Date: Mon Jun 10 18:26:12 2013 +0200 Some minor cleaning up of our graph plotting widget code. commit f70b25f45e8ee8882174a3749b28475e31ace2bf Author: Alan Garny Date: Mon Jun 10 18:25:44 2013 +0200 Addressed a small issue with Windows not handling threads very efficiently. The issue was that a remaining call to SingleCellViewWidget::simulationRunning() would be made after the simulation has finished, thus making the plot non-interactive. So, now, we set the interactive mode based on the actual state of the simulation. commit e4eed8e9a2a6b3d0d1dc5fe83a91b500a24a85d4 Author: Alan Garny Date: Mon Jun 10 11:20:26 2013 +0200 Some minor cleaning up. commit cd6e50dce49cb983881e8ac52c55a1ded68ba5f9 Author: Alan Garny Date: Mon Jun 10 11:20:16 2013 +0200 Updated the user documentation (as a result of #201). commit a96a37121593803eba1e532efc818f3a9b8febc9 Author: Alan Garny Date: Mon Jun 10 10:19:36 2013 +0200 Some minor cleaning up. commit 93906d7ebef53cd79348ac680f55d1de2533a396 Author: Alan Garny Date: Sat Jun 8 18:48:59 2013 +0200 Some minor cleaning up. commit b96607e347c58994baecdff1b3c9f78ec9b7f6e5 Author: Alan Garny Date: Fri Jun 7 21:07:48 2013 +0200 Slight update to our LLVM binaries (since we slightly modified our core plugin interface). commit a86ea206e338e4653799370b48998304181f1b1e Author: Alan Garny Date: Fri Jun 7 17:48:49 2013 +0200 Some minor cleaning up. commit 468a3d71a0cdffd4372fb470b64f706772bc00c3 Author: Alan Garny Date: Fri Jun 7 17:37:42 2013 +0200 Some minor cleaning up. commit 6b493c9da632cab493f2a2d66e6f943b3fd87679 Author: Alan Garny Date: Fri Jun 7 17:27:09 2013 +0200 Cleaned up the Windows CLI version of OpenCOR commit 48b2fe776de0dae31ebb19a68d43f4cdafe570fd Author: Alan Garny Date: Fri Jun 7 15:22:27 2013 +0200 Some minor cleaning up for building LLVM on Linux. commit f604fc0288a496b1b4df5d90f7db95e048772d49 Author: Alan Garny Date: Fri Jun 7 15:15:24 2013 +0200 Updated the user documentation to provide some information about the features of the plotting area (closes #200). commit 33bc8f1a34222afa5ba2a14f22c8e50a43d23f44 Author: Alan Garny Date: Fri Jun 7 14:40:10 2013 +0200 Some work on the CLI version of OpenCOR (#199). commit b2e333dd0f582dcec1cb033cea74d7d5b3492f22 Author: Alan Garny Date: Fri Jun 7 12:56:31 2013 +0200 Improved the switching of file tabs. commit 04d4c3e50993ea1a9d713cbd554d4fd33266d3ee Author: Alan Garny Date: Thu Jun 6 16:38:20 2013 +0200 Temporarily disable the preferences action (since we are not going to work on it just yet). commit 770377c1d896e80ae2140c7809659c91aea16ca6 Author: Alan Garny Date: Thu Jun 6 16:11:01 2013 +0200 Slight update to our third-party libraries page. commit b9b65f61b25a18af4a634fe9e51af6952851d58c Author: Alan Garny Date: Thu Jun 6 16:09:27 2013 +0200 Some minor cleaning up. commit 74669f76ffce39d547fd1a28b3d58c748cd2e21f Author: Alan Garny Date: Thu Jun 6 00:09:48 2013 +0200 Some minor cleaning up. commit acbb2650fc6b6882995e06addfa5c64c4775081c Author: Alan Garny Date: Wed Jun 5 20:58:15 2013 +0200 Minor improvement to our plugins window. commit 8d111fa6a72b4f3355241c8ec0eec976e47638c2 Author: Alan Garny Date: Wed Jun 5 20:46:30 2013 +0200 Got rid of the type of a plugin (General, Gui or Console). Indeed, a plugin might want to offer both CLI and GUI features. commit 39a9c359ecc5ffefd20fe07390c88776abc3c3ab Author: Alan Garny Date: Wed Jun 5 16:35:30 2013 +0200 Some work on supporting CLI features (#199). Also some minor cleaning up. commit a6e0b34108db4c4ec3c3ed771475e392a749dd54 Author: Alan Garny Date: Tue Jun 4 17:57:35 2013 +0200 Disable the export to CellML 1.1 until we actually get around to implement it. commit 396d8e7b318a1391cb8e6d03fdc0b81f7a157cfe Author: Alan Garny Date: Tue Jun 4 17:56:55 2013 +0200 Minor fix (export to CellML 1.1 was always failing). commit 607dd24dd0f30a67f34cc5d97f4cd322f7581c71 Author: Alan Garny Date: Tue Jun 4 17:46:21 2013 +0200 Updated the user documentation (closes #196). commit 2336ca96b517f1608cee54f3a04f73aa65a9a5b4 Author: Alan Garny Date: Tue Jun 4 15:46:29 2013 +0200 Some minor cleaning up. commit 59c6da1208328fd5563e23ed777282ee4dd317c4 Author: Alan Garny Date: Tue Jun 4 15:39:22 2013 +0200 Made the CellML 1.0 export a bit more COR friendly (i.e. don'\''t export containment groups and make sure that encapsulation groups are all in one group) (#196). commit 1587a339b7375f0e9c06b6e8a3161156adbe53d9 Author: Alan Garny Date: Tue Jun 4 10:28:42 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 3f50aa89773dd30ce21a0dd3380c81ed0832e368 Author: Alan Garny Date: Mon Jun 3 19:47:29 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 700392fe4fd1cac0d28967d883e0c57d488404f8 Author: Alan Garny Date: Mon Jun 3 19:47:16 2013 +0200 Some minor cleaning up. commit 769705e52b43b05d0176729709590d2777f9266c Author: Alan Garny Date: Mon Jun 3 18:13:03 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 673d56ecfb4601329d749214060cc8a44523a9e1 Author: Alan Garny Date: Mon Jun 3 18:06:51 2013 +0200 Some minor cleaning up. commit de1b29a79a1de7c15be30a5277a6d1f100399d4c Author: Alan Garny Date: Mon Jun 3 11:10:59 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 88de953edd4bffc4d7464db77a650ec709be3505 Author: Alan Garny Date: Sun Jun 2 19:28:49 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 4ffd82d01c341bedaca564f67e18f080c765298d Author: Alan Garny Date: Sun Jun 2 14:29:42 2013 +0200 Some minor cleaning up. commit bcb77ba4dd5170385e91ceeec88b0481ec567ffe Author: Alan Garny Date: Sat Jun 1 10:33:28 2013 +0200 Updated jQuery from version 1.10.0 to version 1.10.1, and Qwt from version 6.1.0 RC3 to version 6.1. commit 244582f55923499ac615ff3daadd1772dbc40b1d Author: Alan Garny Date: Fri May 31 19:01:52 2013 +0200 Some minor cleaning up. commit 40d02434f482d73afd5a60fa714e57576dfecdae Author: Alan Garny Date: Fri May 31 17:32:12 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 576c4efec18ee3cf571022e3ac95efcf596edbd3 Author: Alan Garny Date: Fri May 31 16:50:18 2013 +0200 Some minor cleaning up. commit 37fbba01421267c949c77fe718fd897b61c41562 Author: Alan Garny Date: Fri May 31 15:24:40 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit 0243fb56bcb66086d88296eaec77a53d848c287e Author: Alan Garny Date: Fri May 31 14:20:55 2013 +0200 Some minor cleaning up. commit bb40aa019fff5839a6d943354812faa836db4c2f Author: Alan Garny Date: Thu May 30 18:35:51 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 (#196). commit cba0d1463aed0da0e893fbb7dd75f3547c62363a Author: Alan Garny Date: Thu May 30 17:53:07 2013 +0200 Added some CellML bootstrap header files which we might need. commit fc6d9d9b66d2624ee1f79a7dd7fb007f5e6387a5 Author: Alan Garny Date: Thu May 30 11:50:01 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 (#196 and #197). commit be5dcaaa395139a754cb3050534152203e2e47c3 Author: Alan Garny Date: Thu May 30 10:58:11 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 (#196 and #197). commit eaa66923c7fcf82b50b2b54ca1df8864e8be1650 Author: Alan Garny Date: Wed May 29 22:29:39 2013 +0200 Slight update to our download page (had forgotten to update some relative links!). commit 336ae93cbd060d2ba808774103b5f8d9bdd1ea7c Author: Alan Garny Date: Wed May 29 22:19:41 2013 +0200 Avoiding a warning on Windows. Also addressed some Windows specific issues related to shared libraries. commit c4f1afe6c2fb3e5fe377fd1b7ef77c894b99f9df Author: Alan Garny Date: Wed May 29 18:32:27 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 (#196 and #197). Also some minor improvement to the way a CellML file is saved. commit 57fd1ab095a349b8d8826a13e1a25a35544dec13 Author: Alan Garny Date: Wed May 29 18:31:05 2013 +0200 Minor improvement to saving a file from our central widget. commit d5793c471d7af23252283faf460013aecd4c383b Author: Alan Garny Date: Wed May 29 17:49:50 2013 +0200 Some minor cleaning up. commit aa33873548db4a43e2a2fa2f734b052c6a192781 Author: Alan Garny Date: Wed May 29 15:09:41 2013 +0200 Stupid mistake! commit 144bf8d52066d434d33439120d5d1edfe44e8a46 Author: Alan Garny Date: Wed May 29 15:01:48 2013 +0200 Slight update to our documentation. commit cfb88b6ca23bc97d341a271fe772146b0c2a8ef2 Author: Alan Garny Date: Wed May 29 12:58:14 2013 +0200 Some minor cleaning up. commit 16fbdb08330baeb8c56ee5154eca8a6160813350 Author: Alan Garny Date: Tue May 28 18:33:13 2013 +0200 Got rid of our depency on LibQxt. commit 22572f2a733237936fb786617d12443c65549331 Author: Alan Garny Date: Mon May 27 20:08:30 2013 +0200 Some minor cleaning up. commit 748da3dea7160277b22954e4b3dd8a452896ec3e Author: Alan Garny Date: Mon May 27 19:19:35 2013 +0200 New snapshots. commit 98e447348468b4dc69f43b894213a63f58a7b0a4 Author: Alan Garny Date: Mon May 27 18:58:07 2013 +0200 Upgraded the CellML API to the snapshot of 22 May 2013. commit 0b45465ba86b12263e6e58ba76223b99b5c464a7 Author: Alan Garny Date: Mon May 27 18:16:20 2013 +0200 Some minor cleaning up. commit 1d1ac7938c20a9e14d40d6505a2d92ea7310c6d3 Author: Alan Garny Date: Mon May 27 14:00:10 2013 +0200 Improved the way the GUI gets updated when a '\''new'\'' plugin or file name gets selected commit dcef63724af3097b21b79ca06a58681cad6d7622 Author: Alan Garny Date: Mon May 27 13:56:38 2013 +0200 Some slight improvements to our CellMLSupport plugin. commit 55ce081915baee21a206aa72d9bae7056553c446 Author: Alan Garny Date: Sun May 26 18:36:57 2013 +0200 Make sure that our CellMLTools menu and actions get enabled/disabled and shown/hidden when appropriate. commit ecd4a67a8a59ce25d22c8625995cc7142dadfcef Author: Alan Garny Date: Sun May 26 16:47:01 2013 +0200 Some minor cleaning up. commit c6d39230055cd6edd1cb53f0a70fb08fbe2ad11d Merge: 895ad3696 e707af9d1 Author: Alan Garny Date: Sun May 26 11:04:40 2013 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 895ad36966b8460252e7c2bba92bcb40f6851fed Author: Alan Garny Date: Sun May 26 11:04:07 2013 +0200 Some minor cleaning up. commit e707af9d18761bd7a98f0ba588eb02a002e0d61d Author: Alan Garny Date: Sat May 25 16:30:15 2013 +0200 Updated jQuery from version 1.9.1 to version 1.10.0. commit 958de4f9765d016c3afc1617bb5b23a9eb0feeb9 Author: Alan Garny Date: Fri May 24 17:52:27 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit 95e5b9ec8219d37ea85c5582cda1bfaceddd454d Author: Alan Garny Date: Fri May 24 17:40:37 2013 +0200 The status tip of a menu doesn'\''t get displayed in the status bar, so no actual need for it. commit 3171f2825dad626c2592ed164c25c46dc7514f01 Author: Alan Garny Date: Fri May 24 17:34:40 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit c932a77ef5e2c2feac2b46184a46f06f7d4a02b0 Author: Alan Garny Date: Fri May 24 16:38:28 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit 6fc51c9eb8056607296d0bcae0d426fed1ca0ab4 Author: Alan Garny Date: Fri May 24 15:27:27 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). Also updated the user documentation. commit b82ff079114c1d320f4787f5d0be5e87b978c4c5 Author: Alan Garny Date: Fri May 24 13:20:50 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit 9a8e41ed0ec0bac5861e9fc7938c414440dae138 Author: Alan Garny Date: Fri May 24 10:57:12 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit a2f2240ef42366b527c8a72cae650a8835256084 Author: Alan Garny Date: Fri May 24 10:44:06 2013 +0200 Working on the GUI side of the CellML conversion (#196 and #197). commit add6ac8761f8096b8f93779e3620c52df37804fa Author: Alan Garny Date: Mon May 20 15:54:24 2013 +0200 Minor update to the OpenCOR website. commit b3467d12671f197a827c0a0542b2060674fa603e Author: Alan Garny Date: Mon May 20 15:49:19 2013 +0200 Some minor updates to the OpenCOR website. commit 27dc7bfa9ce78e6023233c1e2166e02e5f6b01fa Author: Alan Garny Date: Mon May 20 14:25:23 2013 +0200 Some minor improvements to our un/selecting of a category of plugins (#192). commit caef1f61bb3e30ef598baf406a33111604ba436a Author: Alan Garny Date: Sat May 18 19:38:30 2013 +0200 Done with un/selecting a category of plugins (closes #192). commit 59f0e7e60f852e6fa33fd1155d451409ff0f8ff6 Author: Alan Garny Date: Fri May 17 18:23:16 2013 +0200 Some minor cleaning up. commit b036ed139a7530667f2a84ca6903e9cc77790d84 Author: Alan Garny Date: Fri May 17 16:53:06 2013 +0200 Some minor cleaning up. commit a293e0b25c01a7758f25c911b28a4409d98f4867 Author: Alan Garny Date: Fri May 17 16:32:52 2013 +0200 Created an empty preferences window (#193). Also some minor cleaning up. commit 05d6338f6f8b1229a7c9eefbdbf27fc4c2929bb2 Author: Alan Garny Date: Fri May 17 13:52:20 2013 +0200 New snapshots. commit fea72ec386bb267b0122324e40a1d92dfb8e72a3 Author: Alan Garny Date: Fri May 17 13:25:56 2013 +0200 Commented out a few CellML API related things which break our Windows build (and are not necessary for our use of the CellML API). commit 94cd35887329416725350d10d2bc10ecd4e112f0 Author: Alan Garny Date: Thu May 16 20:23:31 2013 +0200 Some minor cleaning up. commit 549d2f8cebbdf286373244d202ef9a795328d7a5 Author: Alan Garny Date: Thu May 16 19:24:02 2013 +0200 Upgraded the CellML API from version 1.12 to the latest snapshot available (6 May 2013). Also, a slight improvement to the retrieval of binary files. commit bf922bba78fee07813f3d7a64f989f8e6639a553 Author: Alan Garny Date: Thu May 16 18:21:25 2013 +0200 Removed from our CellML API plugin all the bits that we don'\''t actually use. One of the reasons is that the latest version of CIS now comes with LLVM statically linked to it and we just don'\''t want that. commit eddcc444b55cf5aac5b021a5f0d564f2e0866587 Author: Alan Garny Date: Thu May 16 17:44:01 2013 +0200 Improved our showing/hiding of docked widgets (closes #149). commit 8d7d8b6c79ddd7be9b62f5883da9bd36c0c53a14 Author: Alan Garny Date: Thu May 16 16:05:52 2013 +0200 Some minor cleaning up. commit 2e4393612d419f690c0e8e6e8a4ae7ea3c9a8f76 Author: Alan Garny Date: Thu May 16 15:47:40 2013 +0200 Some work on showing/hiding a dock area (#149). commit 20a2b9dad57d4b618f20acbf036f50a3aefea6bc Author: Alan Garny Date: Tue May 14 15:25:22 2013 +0200 New snapshots. commit 333d109b85a63e83151500288b67b2ec2c3d7027 Author: Alan Garny Date: Tue May 14 13:02:49 2013 +0200 Minor cleaning up. commit 15469a5432466805c1c77ffcfc41a525d85f40d1 Author: Alan Garny Date: Tue May 14 11:58:23 2013 +0200 Properly distinguish between '\''proper'\'' and '\''computed'\'' constants (closes #190). commit 609c5a0ae393c1999fdb7e4fe89b8087a6203124 Author: Alan Garny Date: Mon May 13 19:35:25 2013 +0200 Some minor cleaning up. commit 51ff1dc90c643aa0afaa69de22081774d8ecb59d Author: Alan Garny Date: Mon May 13 19:29:03 2013 +0200 Some minor cleaning up. commit 7a69b8536835f5f8b3d16faca722bf1aecc19df4 Author: Alan Garny Date: Mon May 13 19:08:51 2013 +0200 SingleCellView plugin: consider non-finite values as being different from initial values (#189). commit 820d64e1ac148f66e0d72dc04e3a88bc11ea7a67 Author: Alan Garny Date: Mon May 13 16:56:00 2013 +0200 Some minor cleaning up. commit 8864dbe5c282ebaf6329ce4bee7a7c2236599ef6 Author: Alan Garny Date: Mon May 13 11:40:19 2013 +0200 New snapshots. commit b5c968492d86f748b62b00b79b28207495cc6f17 Author: Alan Garny Date: Mon May 13 11:36:35 2013 +0200 Reverted some changes to some of our CMake files. commit 53d4dbccec7548c61e7fe9b6d8d135d86a2ac7d5 Author: Alan Garny Date: Mon May 13 09:32:41 2013 +0200 Some minor cleaning up. commit 702fa936446ca4657a6286b3472e9c055771b21d Author: Alan Garny Date: Sun May 12 02:26:42 2013 +0200 Some minor cleaning up. commit 3f82f496e1557b82a3f2b267a4d5b1d7a4c38d52 Author: Alan Garny Date: Sun May 12 01:54:11 2013 +0200 Some minor cleaning up in our core and IDA solvers. commit cc18745f03509fd2b57bcd9763100ab10f254ee2 Author: Alan Garny Date: Sun May 12 00:42:53 2013 +0200 Some minor cleaning up. commit 6064d549c703ca40a368fc4376df7609fbfff5cb Author: Alan Garny Date: Sat May 11 20:04:29 2013 +0200 Quite a bit of refactoring for our solvers. Also fixed an issue with solving DAE models (#188). CONDVAR wasn'\''t passed to computeVariables(), meaning that the compilation of a DAE model might fail (if the model was to make use of CONDVAR in computeVariables()). commit 4729ab72c891fb1cdcf426175bda85e7bdfc228f Author: Alan Garny Date: Sat May 11 08:34:56 2013 +0200 Some minor improvements to some of our CMake files. commit 232300ec60940ae4bd9a4802027a78efa0a5051a Author: Alan Garny Date: Fri May 10 12:42:09 2013 +0200 Use the default corner settings for docking areas (#149). commit 9a6d38f7b36b06e49c701c408902f4094df98ecb Author: Alan Garny Date: Fri May 10 10:09:33 2013 +0200 In the end, we don'\''t want people to use the HTTPS protocol with our GitHub repository. Indeed, according to http://git-scm.com/book/en/Git-on-the-Server-The-Protocols, the HTTPS protocol is simple to set up but it is very inefficient. commit f7b8d99551a943f914a4331e76905436f58bc889 Author: Alan Garny Date: Thu May 9 19:42:12 2013 +0200 Slight update to the developer documentation. commit 6b1c1123c1177d47e9b0397a36d7f7966003573a Author: Alan Garny Date: Thu May 9 18:58:00 2013 +0200 Slight update to the user documentation (partly addresses #186). commit 43986ab53e757f7c74c100bcd086a16fdf39546e Author: Alan Garny Date: Sat May 4 09:34:49 2013 +0200 Handle the fact that binaries are now hosted on the OpenCOR website (rather than the OpenCOR repository itself; #185). commit 368b8da70c9009484c3a0bad4718eb15dc5c9115 Author: Alan Garny Date: Fri May 3 17:46:13 2013 +0200 Minor update to the developer documentation. commit d693e6b4c1af0ce98b31f7840b760e04f4480434 Author: Alan Garny Date: Fri May 3 17:44:55 2013 +0200 Handle the fact that binaries are now hosted on the OpenCOR website (rather than the OpenCOR repository itself; #185). commit 7fd7e3359e6ef4ff8d0af62b6ad8ec3645af0382 Author: Alan Garny Date: Fri May 3 17:40:22 2013 +0200 Improved the make/package scripts (they will now stop as soon as a build/packaging error occurs). commit 07b6c5fa466b6b4473ecfadc4aa35e28a4e919b5 Author: Alan Garny Date: Tue Apr 30 11:36:08 2013 +0200 Minor update to our user documentation. commit 1734150b91510a066951eca39c8c3ad4143b2b8e Author: Alan Garny Date: Mon Apr 29 17:17:27 2013 +0200 An OS X specific minor GUI fix. commit 5831b809addaae58071df41865bcf474a96bbdcf Author: Alan Garny Date: Mon Apr 29 16:17:27 2013 +0200 Some minor cleaning up. commit 178c349141b4205cad86aff0c7273e691da84562 Author: Alan Garny Date: Mon Apr 29 11:51:38 2013 +0200 On Linux systems, we should apparently include unistd.h to use _SC_PAGESIZE (closes #184). commit e91d0d5d4a9eb366316fb437399f3cf81c246859 Author: Alan Garny Date: Mon Apr 29 10:37:29 2013 +0200 Slight update to our developer documentation. commit 8f564c6915a226794ef273d1b5f5c727445c1bd0 Author: Alan Garny Date: Sun Apr 28 02:15:06 2013 +0200 Slight update to the user documentation. commit 17e272a2b3c0c12e7cf50bd0c358bd4d2831b6e1 Author: Alan Garny Date: Fri Apr 26 08:05:57 2013 -0400 Added the NSPrincipalClass key to our Info.plist file to enable high DPI on OS X. High DPI is not supported in Qt 5.0.2, but it should be in Qt 5.1. Still, by adding this key, we will be ready. There is another key (NSHighResolutionCapable), but it'\''s optional and set to true by default, so we don'\''t need it. For more information, see http://blog.qt.digia.com/blog/2013/04/25/retina-display-support-for-mac- os-ios-and-x11/. commit 2f030a51f7611dc1a3dae9b9439732064fe4592f Author: Alan Garny Date: Wed Apr 24 19:16:17 2013 -0500 Updated the user documentation. commit 7e69ade230bf462b0833f423da29c8d8bf0e20f3 Author: Alan Garny Date: Wed Apr 24 18:21:40 2013 -0500 Some minor cleaning up. commit 4051dc492304143110024873110a97284e3d02c8 Author: Alan Garny Date: Wed Apr 24 14:43:22 2013 -0500 Some minor cleaning up. commit b89dc63daef70bb35f42028d484be998f31976f6 Author: Alan Garny Date: Wed Apr 24 14:37:37 2013 -0500 Some minor cleaning up and fixing of a property tool tip in our property editor widget. commit f90582e0422216cb3a9ca58709dacb75dd9dc917 Author: Alan Garny Date: Tue Apr 23 17:32:38 2013 -0500 Updated our documentation. commit a45733bd4624ab3cc18a37302c0f8868dd3d42de Author: Alan Garny Date: Tue Apr 23 17:18:22 2013 -0500 Slight improvement to our property editor. commit ccafee1038857aed681cd35a2cd559ef75160689 Author: Alan Garny Date: Tue Apr 23 17:13:01 2013 -0500 Some minor cleaning up / improvements. commit f8078521aa6332dfddb6bfb56b8973a7eb5dd938 Author: Alan Garny Date: Tue Apr 23 16:51:09 2013 -0500 Simulation and solvers properties now have a tool tip similar to that of parameters properties (closes #181). commit 9a1aeef4585c0131d974fedb0205b3d7c6e526ba Author: Alan Garny Date: Tue Apr 23 16:05:54 2013 -0500 Some minor cleaning up. commit fe58abe1c48139872a270d6d4f2db77bbe031902 Author: Alan Garny Date: Tue Apr 23 15:56:01 2013 -0500 Done with the internationalisation of our solvers (closes #180). Quite a bit of cleaning up too. commit 8bcb0747e2a4f46c3d39dc743dd06b2987367513 Author: Alan Garny Date: Tue Apr 23 14:50:44 2013 -0500 Some work towards the internationalisation of our solvers (#180). commit 2c7ae98c3823616c4e1446a79aeb141e5e37c5e4 Author: Alan Garny Date: Tue Apr 23 14:47:53 2013 -0500 Some minor cleaning up. commit 7036ecd093a10d4b730364286d7934930e12b9e4 Author: Alan Garny Date: Tue Apr 23 13:55:12 2013 -0500 Keep track of the locale in our global settings so that it can be retrieved from any plugin. commit af11f453dda863759da6956589833d462318994e Author: Alan Garny Date: Tue Apr 23 13:09:49 2013 -0500 Minor locale-related fix when retrieving the description of a plugin. commit d1e481803c55b0977cac7b9cf7f58b1669169620 Author: Alan Garny Date: Mon Apr 22 19:58:57 2013 -0500 Single cell view plugin: provide a more comprehensive tool tip for model parameters (closes #169). commit 079650c234f4c4e192b706038539844d33506e7d Author: Alan Garny Date: Mon Apr 22 17:29:25 2013 -0500 Some minor refactoring (renamed the SingleCellSimulationView plugin to SingleCellView). commit 282dd498ac642b86266f0dcd33659cab6709493d Author: Alan Garny Date: Mon Apr 22 16:45:56 2013 -0500 Updated our user documentation. commit e5236a11a8c546fc341b88826817dd39dd561075 Author: Alan Garny Date: Mon Apr 22 16:30:42 2013 -0500 Some minor refactoring and cleaning up related to the opening of files from a plugin. commit f70569a46aebc90f3b9cb208c1dc55176863e37e Author: Alan Garny Date: Mon Apr 22 12:45:50 2013 -0500 CellML annotation view plugin: can now open an imported file using the context menu (closes #178). commit 2f0012a00d6479741f456e05b0378fa6965de5a7 Author: Alan Garny Date: Mon Apr 22 12:32:18 2013 -0500 Some minor cleaning up. commit 3318acfb040b9f9a7cd0547354413a100af65dd9 Author: Alan Garny Date: Mon Apr 22 11:39:04 2013 -0500 Reverted what I thought was some '\''safe'\'' cleaning up. commit e56dc4db062adf57398ce4d1ef1ebd984f60ecdc Author: Alan Garny Date: Mon Apr 22 11:10:02 2013 -0500 Added support for left/right arrow keys support in our tree views (closes #179). commit b8ba8817412c04fbb23094cc32a960aab934e311 Author: Alan Garny Date: Mon Apr 22 10:49:16 2013 -0500 Some minor cleaning up. commit eb3eb056e4e46ff2ddaf05c2882edbc7948521d1 Author: Alan Garny Date: Sat Apr 20 13:59:29 2013 -0500 Slight update to the user documentation. commit c63dddf8eac3fa13a3c71dad30a8db07fd726614 Author: Alan Garny Date: Fri Apr 19 20:07:17 2013 -0500 SingleCellSimulation plugin: made model parameters more obvious (closes #169). As in COR, we use a colour coding to distinguish between the different types of model parameters: - Constants (editable): filled red circle with a white hole; - Computed constants (non-editable) filled red circle; - State (editable): filled blue circle with a while hole; - Rate (non-editable): filled blue circle; and - Algebraic (non-editable): filled green circle. commit 3598ca57fa598bca66fbfb00bf524304a09b392c Author: Alan Garny Date: Fri Apr 19 19:36:26 2013 -0500 Some minor cleaning up. commit d290d6a3f20d36e46c84fecd1f4219b41f894e76 Author: Alan Garny Date: Fri Apr 19 16:11:57 2013 -0500 Some minor cleaning up. commit e3455d965ded5cf6afe6bbc9e74c7d25d5bb70ab Author: Alan Garny Date: Fri Apr 19 15:11:40 2013 -0500 Some minor cleaning up (removed our debug traces). commit e46a5f29b570e300133934e60c9aea5cebc934d7 Author: Alan Garny Date: Thu Apr 18 16:02:32 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit eab4f3d016844a0067428e2ba60a21eeef7dc703 Author: Alan Garny Date: Thu Apr 18 16:01:22 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit 6c533856dc8386bd95e02885939aae64a1cde8c8 Author: Alan Garny Date: Thu Apr 18 15:55:17 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit 0912c071766536b3838762c14aa83eab95b21a91 Author: Alan Garny Date: Thu Apr 18 10:53:46 2013 -0500 Some minor cleaning up of our compiler plugin. commit b46eaf5701500552ef8c5c883d77277af88709a7 Author: Alan Garny Date: Wed Apr 17 22:49:47 2013 -0500 Minor update to our developer documentation. commit 6528ac334039223d7a78f0a59b8315412a0575d4 Author: Alan Garny Date: Wed Apr 17 17:06:45 2013 -0500 Some minor editing. commit b35d4c5312478feefc38e43f4b8a468e911f917b Author: Alan Garny Date: Wed Apr 17 15:26:56 2013 -0500 Minor editing of our main documentation'\''s menu. commit 7e48318a86b2dd302e24b292ed42df6356412674 Author: Alan Garny Date: Wed Apr 17 14:19:24 2013 -0500 Increased the precision of property values (closes #177). commit 26111881f4908de1c4b6217706e8d657b4769542 Author: Alan Garny Date: Wed Apr 17 13:26:32 2013 -0500 PropertyEditorWidget: fixed the issue that would consider a property value as changed when it wasn'\''t (closes #176). commit d362a11d631709af63fa6ac3e5d3bd6199509518 Author: Alan Garny Date: Wed Apr 17 10:38:00 2013 -0500 Slight update to our user documentation. commit 0e59eec640ec050583ec5152c7a9632f61ba5bd3 Author: Alan Garny Date: Tue Apr 16 22:24:46 2013 -0500 Oops, forgot to test things after updating our copy of QtSingleApplication! commit ba93a576e4112474a74ccc70268b2bffd162df2a Author: Alan Garny Date: Tue Apr 16 17:03:12 2013 -0500 Updated our copy of QtSingleApplication. commit 6d037dea89a0accd493e7cb4f375601582f31391 Author: Alan Garny Date: Tue Apr 16 03:07:52 2013 +0200 Slight update to our user documentation. commit 3acaf31c231047a48690f6fca42fac0e00aeab33 Author: Alan Garny Date: Tue Apr 16 03:05:04 2013 +0200 Slight update to our developer documentation following the release of Xcode 4.6.2. Also slightly updated our download page. commit edac69833fa79fe9bba7d222059bca2936703096 Author: Alan Garny Date: Tue Apr 16 03:04:20 2013 +0200 Slight improvement to our run/pause(/resume) action. commit 7573052c18644389716721e89feccd02785a0759 Author: Alan Garny Date: Tue Apr 16 02:38:54 2013 +0200 (Hopefully) fixed an issue which used to crash OpenCOR following two successive (very) quick attempts at trying to run a simulation (closes #160). commit b094335d7c759c0a726d3b03ed1854cba14f6ffb Author: Alan Garny Date: Tue Apr 16 00:37:19 2013 +0200 Some minor refactoring. Rather than having two actions for running and pausing a simulation, we now have only one since the same shortcut is to be used for both actions. commit 37326629f01cdbec6a18b05bcc9f9c9e534ef662 Author: Alan Garny Date: Mon Apr 15 14:16:51 2013 -0500 Fixed the issue which allowed OpenCOR to remember which parameters to plot after closing and reopening a CellML file (closes #174). Also some minor cleaning up. commit d9ad69295e6320a3fc3b4254f8dd419fa658ccbd Author: Alan Garny Date: Mon Apr 15 19:01:45 2013 +0200 Minor reverting of our user documentation. commit eee33cebfdb4d84835faceb149c531a0dc2be48d Author: Alan Garny Date: Mon Apr 15 11:36:00 2013 -0500 Some minor cleaning up. commit c5bd543cfe4045cf62d25920af58876f873957d8 Author: Alan Garny Date: Sun Apr 14 21:33:21 2013 -0500 Minor update to our documentation. commit 36828df52fd8fd6fe9966d8dcd22acc495694bf7 Author: Alan Garny Date: Sun Apr 14 13:30:28 2013 -0500 Slight update to our download page. commit 5ccaa68f47648788496c3deffa583095b3133673 Author: Alan Garny Date: Sun Apr 14 12:32:00 2013 -0500 Minor updates to our documentation. commit f2caea1e40dedbce401569671440a44211e7cb3e Author: Alan Garny Date: Sat Apr 13 19:49:13 2013 -0500 Some minor cleaning up. commit 29c5cbf4e65a8b51f203bb12028115523c7a9270 Author: Alan Garny Date: Sat Apr 13 09:10:43 2013 -0500 Implemented the midpoint solver (closes #173). commit 81ee4b073cc9536d906f2ec6e64be09444cd94b6 Author: Alan Garny Date: Sat Apr 13 09:09:45 2013 -0500 Some minor cleaning up. commit 6b546138ea9d85324ced84ae2364f20aa98700d2 Author: Alan Garny Date: Fri Apr 12 15:22:23 2013 -0500 Some minor cleaning up. commit 09ca2d0802e962601402efda77e513a5672bf0cd Author: Alan Garny Date: Fri Apr 12 09:37:38 2013 -0500 Slight update to our common CMake file. commit c8192d7635c0897f2913ae6465ebe45e25d0e857 Author: Alan Garny Date: Fri Apr 12 09:30:55 2013 -0500 Minor update to our developer documentation. commit e4a4532c4cda464c7c5d4ea705cb23bfc8f04255 Author: Alan Garny Date: Thu Apr 11 11:39:38 2013 -0500 Updated the developer documentation and common CMake file following the release of Qt 5.0.2 and Qt Creator 2.7. commit e37a20c2f7c6db20aadecee0876d57d2e9258896 Author: Alan Garny Date: Tue Apr 9 20:25:59 2013 +0200 Some minor cleaning up and refactoring. commit 914726b6fbdf0d0b2f9ff47ff6e2c47a0ffa3cb9 Author: Alan Garny Date: Sun Apr 7 14:08:22 2013 +1200 Improved our download page. commit 095496225f83d65389b71a38f707180b78fe4520 Author: Alan Garny Date: Sun Apr 7 13:50:14 2013 +1200 New snapshots. commit 9f628a83f2d0e858e09c76d869df94c158e0416a Author: Alan Garny Date: Sun Apr 7 13:33:41 2013 +1200 Slight update to our user documentation. commit 8b8928a5bb5c0b567e1b1a210a42422e7e1378e3 Author: Alan Garny Date: Sun Apr 7 13:31:53 2013 +1200 Slight update to our user documentation. commit e19f0ecbd1c3071624e9ae9a80915a3ea9f8826a Author: Alan Garny Date: Sun Apr 7 13:27:09 2013 +1200 Improved our graph panel (closes #171). commit 0ff10e1159b5ceaa735bc48df1192e080b90dcf1 Author: Alan Garny Date: Fri Apr 5 20:08:05 2013 +1300 Updated our user documentation. commit e8b8e715f1770140358deaeb4b037f7e50a7ba3f Author: Alan Garny Date: Fri Apr 5 19:29:04 2013 +1300 Addressed a potential memory access issue in our plugin framework. commit 36160c916ae01d71d909645ddbce6681b5ce551a Author: Alan Garny Date: Fri Apr 5 18:45:52 2013 +1300 Some minor cleaning up. commit 90a86a0ad1cbca6b5ede974bdb0b652673965ede Author: Alan Garny Date: Fri Apr 5 16:26:46 2013 +1300 Improved our property editor widget. commit 81e4c4210626e8ebd85a117fc5191efea2a650fa Author: Alan Garny Date: Fri Apr 5 15:38:52 2013 +1300 Fixed the issue which prevented a simulation tree widget from expanding with single click (closes #170). commit 60b34a6f88ecb382332a4a604ce026a7d4e9eb01 Author: Alan Garny Date: Fri Apr 5 14:07:18 2013 +1300 Some minor cleaning up. commit ec31433e8d39037a9ecde2cd3ae09644faf0929a Author: Alan Garny Date: Fri Apr 5 13:58:04 2013 +1300 Some minor cleaning up. commit 1391cc99a7c349583619dbea4cbb6ad26b480cd7 Author: Alan Garny Date: Thu Apr 4 18:32:13 2013 +1300 Implemented the Heun solver (closes #168). commit 401a33748e396034a9ca61646a3066b9a357ce7a Author: Alan Garny Date: Thu Apr 4 18:31:19 2013 +1300 Some minor cleaning up. commit 95cbf208e49e19ec24b1fba42ff8aff484d2e429 Author: Alan Garny Date: Thu Apr 4 17:05:18 2013 +1300 Updated our documentation. commit e43e6111f4913edb9b2ec689e4b3544ce47357d9 Author: Alan Garny Date: Thu Apr 4 16:15:32 2013 +1300 Slight update to our documentation following our work on #167. commit c3950f4c497f2eae55408973db9248e89b4aa666 Author: Alan Garny Date: Thu Apr 4 15:08:38 2013 +1300 Prevent a property from being cancelled unless explicitly requested by the user (closes #167). commit f37a8da0e07ce4e6fedaad91fb5cbb0b7682b041 Author: Alan Garny Date: Thu Apr 4 10:06:50 2013 +1300 Update our documentation. commit 3141b5a9dec681daf0aac68b168a85995222fa65 Author: Alan Garny Date: Wed Apr 3 19:38:38 2013 +1300 Some cleaning up. commit 6ea9a65e678b4f6087c7f554115ace635b93c765 Author: Alan Garny Date: Wed Apr 3 19:27:39 2013 +1300 Oops, used the wrong version number on our what is new page. commit 505fd5fc2f5238479936e79e3f958cf7d91b42bc Author: Alan Garny Date: Wed Apr 3 19:23:50 2013 +1300 New snapshots. commit 425d6080cf0dcff18d74c1947722464dc1bc1348 Author: Alan Garny Date: Wed Apr 3 19:20:08 2013 +1300 Updated the user documentation now that we have two more ODE solvers. commit b46e9e68379330bee99e9dd5ccb32b314ac55f9f Author: Alan Garny Date: Wed Apr 3 19:07:52 2013 +1300 Updated the user documentation now that we have two more ODE solvers. commit e5c50729e9fbb29b28e0e70fa4121dcd00191715 Author: Alan Garny Date: Wed Apr 3 18:51:17 2013 +1300 Now working towards version 0.2. commit b7feee862453761d5283a9f2e13d34389196840c Author: Alan Garny Date: Wed Apr 3 18:35:17 2013 +1300 Implemented the fourth-order Runge-Kutta solver (closes #166). commit 9797b6ec3f4943917c49b059b933512fb584dcb7 Author: Alan Garny Date: Wed Apr 3 18:33:50 2013 +1300 Some minor cleaning up. commit e9c37737ea10832268b9bfd0a9f3e2cf1c44a5d5 Author: Alan Garny Date: Wed Apr 3 17:59:07 2013 +1300 Some minor cleaning up. commit 116fa60cb85753857a820e7a12790fd93ed3dfc8 Author: Alan Garny Date: Wed Apr 3 17:05:04 2013 +1300 Implemented the second-order Runge-Kutta solver (closes #165). commit 8976cbdd6fd151ed9e200e060f0efe8224c8b093 Author: Alan Garny Date: Wed Apr 3 16:51:55 2013 +1300 Some minor cleaning up. commit 5ed7e098d5ef01ed3bc70f9e7680fe43e43fcd09 Author: Alan Garny Date: Wed Apr 3 15:51:13 2013 +1300 Some minor cleaning up. commit 5f7fa1d1f7bece4ce8c37c119b7af9f8b38201d6 Author: Alan Garny Date: Mon Apr 1 21:15:58 2013 +0200 Updated our download page now that we have released version 0.1. commit 425a42810e187d37080edac727c118a4d6ff8739 Author: Alan Garny Date: Mon Apr 1 20:23:59 2013 +0200 Oops, a minor issue with packaging on Linux. commit 273fb33dc90835e9ebb7b0906f4f35d484fa7622 Author: Alan Garny Date: Mon Apr 1 20:04:40 2013 +0200 Version 0.1. commit 655fae86b931bb92cd0a20c5543fcd2b6451dc11 Author: Alan Garny Date: Mon Apr 1 20:03:58 2013 +0200 Some editing of our documentation. commit c332a2716a60148c7857706d6ad0edaf800cd2a7 Author: Alan Garny Date: Mon Apr 1 19:25:30 2013 +0200 Some editing of our documentation. commit 7612e4e7855180124d2da1f9189cf6d58fbe8d29 Author: Alan Garny Date: Mon Apr 1 17:02:30 2013 +0200 Fixed a couple of aesthetic issues with our simulation plugin. commit 75b9920bd5008944b731887cee32604c0ee9430d Author: Alan Garny Date: Mon Apr 1 15:13:32 2013 +0200 Some editing of our documentation. commit a0216755d28daccce7eb3694ddba0b27ea0825c5 Author: Alan Garny Date: Mon Apr 1 14:42:31 2013 +0200 Some editing of our documentation. commit b8306095dbd27977373e1319ed504d35e96d5775 Author: Alan Garny Date: Mon Apr 1 14:20:31 2013 +0200 Some editing of our documentation. commit 5805e2c35aa3e407ef16eb9e2c2501ac5fab3563 Author: Alan Garny Date: Mon Apr 1 13:30:24 2013 +0200 Some editing of our documentation. commit 61bd50cd7cba90e143a2ebb49d6a742348531213 Author: Alan Garny Date: Mon Apr 1 13:17:23 2013 +0200 Fixed a small issue of the CellML Annotation view plugin'\''s GUI not being properly updated. commit e9cc946b083b6346c45bae240647bfbe8e727a2d Author: Alan Garny Date: Mon Apr 1 11:13:09 2013 +0200 Some editing of our documentation. commit b64598452f2dc9f99df47dda3db04289da31464e Author: Alan Garny Date: Mon Apr 1 11:11:39 2013 +0200 Some editing of our documentation. commit c20ab49d7fd4b310d4e359a46faf76ec65051b69 Author: Alan Garny Date: Mon Apr 1 11:04:21 2013 +0200 Some editing of our documentation. commit 6274fadf4aebe8347a7a1347f481ac17b22d4ef5 Author: Alan Garny Date: Mon Apr 1 10:33:29 2013 +0200 Some editing of our documentation. commit fe817766949302afe5889d223fff70c8e080f1ce Author: Alan Garny Date: Mon Apr 1 10:28:41 2013 +0200 Some editing of our documentation. commit 53326dcf327fe23b12bc0097c7d84f8b7c179b34 Author: Alan Garny Date: Mon Apr 1 10:13:58 2013 +0200 Some editing of our documentation. commit 3b1ffe5ed4e33972f4de6281f7a7d21cec48031f Author: Alan Garny Date: Mon Apr 1 10:09:47 2013 +0200 Some editing of our documentation. commit dbd48fb543906e46d9af6829db51f08eb8488fc1 Author: Alan Garny Date: Mon Apr 1 20:46:40 2013 +1300 Some editing of our documentation. commit e08c13d1afe298d7257663cd744f0cc322f68fe8 Author: Alan Garny Date: Mon Apr 1 18:24:28 2013 +1300 Some editing of our documentation. commit fc6070cd0db5819420cba22747fcd501e046af31 Author: Alan Garny Date: Mon Apr 1 17:42:59 2013 +1300 Slight cleaning up in our FileOrganiser plugin. commit 58f1b35b0de13a4fa3ca243a6bc32507238d487e Author: Alan Garny Date: Mon Apr 1 17:21:47 2013 +1300 Some editing of our documentation. commit 2af420685b28139a23532aebb60e597e47fc383a Author: Alan Garny Date: Mon Apr 1 17:19:48 2013 +1300 Some editing of our documentation. commit 77f1ec72cdad15e2e89110eaadd2e79c40ee2a0c Author: Alan Garny Date: Mon Apr 1 17:11:56 2013 +1300 Fixed a small issue with our FileBrowser plugin. commit 0733457acea92f51f4977ff2525fa509b49b761a Author: Alan Garny Date: Mon Apr 1 17:03:51 2013 +1300 Some editing of our documentation. commit aa97229eda4bea4453891117899244baca12fa4a Author: Alan Garny Date: Mon Apr 1 16:37:27 2013 +1300 Some editing of our documentation. commit d6812d6c26761646705cc9588bafe5ba4eabf269 Author: Alan Garny Date: Mon Apr 1 16:28:04 2013 +1300 Some editing of our documentation. commit ae86a330bbcef33eee1563d0a83d20d84919ff30 Author: Alan Garny Date: Mon Apr 1 16:14:02 2013 +1300 Oops, had forgotten to update some of our CMake files! commit 22f771edf19703b62a135f8498df24a01311ccd8 Author: Alan Garny Date: Mon Apr 1 16:01:30 2013 +1300 Some editing of our documentation. commit afdaf726a43fd01c7b56875efe5f39a616e0dbc3 Author: Alan Garny Date: Mon Apr 1 15:44:30 2013 +1300 Some editing of our documentation. commit 20527e445ad69d531a8312b1860cb96ac814537d Author: Alan Garny Date: Mon Apr 1 15:43:49 2013 +1300 Slight update to our SUNDIALS plugin. commit a128c259d0249a6c419bab17c2fef82a198ce0b0 Author: Alan Garny Date: Mon Apr 1 15:29:31 2013 +1300 Some editing of our documentation. commit 82068652609cbc3edfc9d154347fd88c625889ca Author: Alan Garny Date: Mon Apr 1 15:13:15 2013 +1300 Some editing of our documentation. commit 232ffc41febd1e8e24803e5b4cfc5e330a601c3a Author: Alan Garny Date: Mon Apr 1 14:39:05 2013 +1300 Some editing of our documentation. commit 1ae07e487a0e525d518d73fd8ab333bf9f7dad6c Author: Alan Garny Date: Mon Apr 1 14:35:24 2013 +1300 Some editing of our documentation. commit b68194bbd76ec16933ffe55bad5508791fa40c5c Author: Alan Garny Date: Mon Apr 1 14:24:04 2013 +1300 Some editing of our documentation. commit c8ebf209fb343c41f60989a2f25dbbd6c4c4f99c Author: Alan Garny Date: Mon Apr 1 14:11:43 2013 +1300 Some editing of our documentation. commit 63150ae932abf3a8fe1d640b48ca44d6290861b2 Author: Alan Garny Date: Mon Apr 1 13:52:35 2013 +1300 Some editing of our documentation. commit 6bb77f6ba7fe0e4c8eef89f5e3b91aeb89335c9f Author: Alan Garny Date: Mon Apr 1 13:23:59 2013 +1300 Some editing of our documentation. commit bba7fb6cf63da693c8fb7daba90e4d435f93eea6 Author: Alan Garny Date: Mon Apr 1 13:00:33 2013 +1300 Some editing of our documentation. commit e12db3228dd4115e321290418315963cf6101ab9 Author: Alan Garny Date: Mon Apr 1 12:33:23 2013 +1300 Some editing of our user documentation. commit 2e935de4a4406aa0e774f1ca8421b409aa3bac0f Author: Alan Garny Date: Mon Apr 1 12:10:56 2013 +1300 Cleaned up all of our non-binary files, so that they don'\''t have trailing spaces and use a UNIX ending. commit 41c063005600ebd7ef6dc95c4067d1550a6c7024 Author: Alan Garny Date: Mon Apr 1 11:28:53 2013 +1300 Some editing of our user documentation. commit d9147ab30ed6623a176f24aa0af28720f64b0101 Author: Alan Garny Date: Mon Apr 1 10:36:49 2013 +1300 Some minor editing of our home page. commit f743b4090b5a28cf2761a95ac3f359229cd2505e Author: Alan Garny Date: Sun Mar 31 19:44:49 2013 +1300 Some editing of our developer documentation. commit e4f038b916fb65e4ec01ccbcdc802fd7015285f2 Author: Alan Garny Date: Sun Mar 31 19:18:51 2013 +1300 Some minor cleaning up. commit e3239028887de58bea51705231922f96aa8159bf Author: Alan Garny Date: Sun Mar 31 19:04:40 2013 +1300 Some minor cleaning up. commit 508d6633fdcefab5904f62054303b629229f6a80 Author: Alan Garny Date: Sun Mar 31 17:26:35 2013 +1300 Some minor editing of our developer documentation. commit d76fea1c8b5bdabe066db5e9bf7ace91651a48e8 Author: Alan Garny Date: Sun Mar 31 17:18:39 2013 +1300 Some minor editing of our developer documentation. commit d6a357b71427676e3eaa85d41bc87a321112e9d8 Author: Alan Garny Date: Sun Mar 31 16:59:44 2013 +1300 Some minor editing of our developer documentation. commit 4e2fd750e642f0ed49229ff6c29b5c983a3e6b0a Author: Alan Garny Date: Sun Mar 31 16:46:32 2013 +1300 Some minor cleaning up. commit 63e7e685b4e17387282b9ccaabf71415d6b38fd9 Author: Alan Garny Date: Sun Mar 31 15:02:02 2013 +1300 Some editing of our documentation for internationalising OpenCOR. Also some minor cleaning up as a result of the updated documentation. commit 38ee31b36ba9787541e86358d63bfa0837d41ec3 Author: Alan Garny Date: Sun Mar 31 09:58:16 2013 +1300 Some editing of our developer documentation. commit d5b83e20f8a1bd685b859f650473039c17297a0a Author: Alan Garny Date: Sat Mar 30 19:27:52 2013 +1300 Some editing of our documentation. commit 5858409ec44c19d3e678d737427fe6f2fc0b11d2 Author: Alan Garny Date: Sat Mar 30 19:16:05 2013 +1300 Some editing of our documentation. commit a450c71da702ad2cf10b9e28496446855b8a3c7c Author: Alan Garny Date: Sat Mar 30 19:01:58 2013 +1300 Some editing of our documentation. commit ba1109b11e7140a2227717e5927705687df2e763 Author: Alan Garny Date: Sat Mar 30 18:27:47 2013 +1300 Some minor refactoring to respect our coding style. commit 1284cf5f615f77bb508c5d6f5b1be1262024add1 Author: Alan Garny Date: Sat Mar 30 18:22:34 2013 +1300 Some minor refactoring to respect our coding style. commit 6ea199903f2f83dcac73e420dab3733b2f8da03f Author: Alan Garny Date: Sat Mar 30 18:20:37 2013 +1300 Some editing of our documentation. commit 6712cdcf9314722ec07cf43d4447857615d3e28a Author: Alan Garny Date: Sat Mar 30 16:40:45 2013 +1300 Some editing of our documentation. commit 62ec503eb4af2c5e74320befe142574c458dbc85 Author: Alan Garny Date: Sat Mar 30 15:56:44 2013 +1300 Some minor editing of our documentation. commit 0201b7625a79c64ac0e8a4c896f364be5acbe2c1 Author: Alan Garny Date: Sat Mar 30 15:31:40 2013 +1300 Some minor editing of our documentation. commit d30ecae33557610c61c6e0ac86a828624dfacae8 Author: Alan Garny Date: Sat Mar 30 12:39:25 2013 +1300 Minor Windows compilation related issue. commit 0b05ddda594c0168443e666c60c44bdb071cab23 Author: Alan Garny Date: Sat Mar 30 12:15:50 2013 +1300 Improved our downloads page. commit 95bab3f5ecc5ef8de2313bea5b49eddd56fd73bb Author: Alan Garny Date: Fri Mar 29 18:25:19 2013 +1300 Updated our clean batch file. commit 3d420c62559eb113173893648e8dd979841f47bc Author: Alan Garny Date: Fri Mar 29 17:24:12 2013 +1300 Updated our copy of Google Code Prettify. commit 1f3dc2bb9012ef2ca4be88a1c8427a53ed12fba5 Author: Alan Garny Date: Fri Mar 29 16:50:17 2013 +1300 Improved our downloads page. commit 72e2d0d40ff88dc6dc542fbd8ed557d1ba06cfb1 Author: Alan Garny Date: Fri Mar 29 16:46:19 2013 +1300 Improved our downloads page. commit 3f8c6d8b86708470e68892f77c2dbf6b4ec74fdb Author: Alan Garny Date: Fri Mar 29 15:03:35 2013 +1300 Use PHP in our downloads page, so we can retrieve the size of a download file. commit 83127658ff96040e140cf61392cc087156bc6a01 Author: Alan Garny Date: Thu Mar 28 20:17:51 2013 +1300 Some minor updates to one of our CSS files. commit 173b19ff9bba0b40a6453d43e169e7c6960e0804 Author: Alan Garny Date: Thu Mar 28 20:02:15 2013 +1300 A minor update to our downloads page. commit 3a5792b62dd772ad425142d3ae6229f688958164 Author: Alan Garny Date: Thu Mar 28 19:59:58 2013 +1300 Some minor updates to our downloads page. commit a0de082c62685c307fda9d7005ba8e7015a86324 Author: Alan Garny Date: Thu Mar 28 19:58:34 2013 +1300 Some minor cleaning up. commit 8efa85c315ca592941da93678b3ca7ef0bbd396f Author: Alan Garny Date: Thu Mar 28 19:50:12 2013 +1300 Slight improvement to our conversion of a size to a string. commit 826e193202c4e87da28f993b80ee25ce36b87192 Author: Alan Garny Date: Thu Mar 28 15:33:53 2013 +1300 Some minor improvements to our documentation. commit ed18167d0bcccae49e15e9f1c0e0514ddf819518 Author: Alan Garny Date: Thu Mar 28 15:10:50 2013 +1300 Some minor improvements to our documentation. commit 7b2c6405b4e81ec80573baf7cc5a23339ad42937 Author: Alan Garny Date: Thu Mar 28 13:30:35 2013 +1300 Some minor cleaning up for Version 0.1. commit 67596ba25f17778534c22216c93f8b0b987316ea Author: Alan Garny Date: Thu Mar 28 13:27:41 2013 +1300 Some minor cleaning up. commit 7b8f68a138256d69ca8bf57b0bb4f68a648f954b Author: Alan Garny Date: Thu Mar 28 13:22:30 2013 +1300 Slight modification to our Google Analytics tracking of clicks. commit 2d761b74d13c34d9f38af86a5c23819fcc4feb75 Author: Alan Garny Date: Thu Mar 28 11:54:46 2013 +1300 Some minor cleaning up. commit 6c4a7a9dfce73727ac6e8bd562e85c21a8fda4d3 Author: Alan Garny Date: Wed Mar 27 16:39:42 2013 +1300 Fixed a minor issue with the File menu on OS X. commit 7370c4203fe3962f7043c6d2b1b10f81180b2fc9 Author: Alan Garny Date: Wed Mar 27 13:55:50 2013 +1300 Fixed an issue with replotting our graph panel. commit 9b83af1c5398b5bc8136d9399ea23e326fb34c41 Author: Alan Garny Date: Wed Mar 27 09:42:02 2013 +1300 Some minor cleaning up. commit 1f346425612419a97e4b25fb6d8778e7da08050b Author: Alan Garny Date: Wed Mar 27 09:40:26 2013 +1300 Keep track of the reset status of our simulation plugin. commit 493a1e0238721bd3cf85699337a37429b2a1260a Author: Alan Garny Date: Wed Mar 27 09:04:37 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. Also cleaned up some of our JavaScript files. commit a832aab192767cfc90037640088b186f2bbb6f42 Author: Alan Garny Date: Mon Mar 25 11:49:17 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit b06a851ce144f0d486d3905e27a904fe41e083d6 Author: Alan Garny Date: Mon Mar 25 11:33:59 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit 36a887d9a1a147bbb5b2a797ea36b503485e0cf8 Author: Alan Garny Date: Mon Mar 25 11:10:35 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit ff512d8d0a2550e6fa263f851c7327f16ff1d3c3 Author: Alan Garny Date: Mon Mar 25 09:30:49 2013 +1300 Slight modification to our Google Analytics tracking of clicks. commit f404651d6454c975b80814d7e0c83d0b763ac85a Author: Alan Garny Date: Sun Mar 24 16:58:57 2013 +1300 Some cleaning up of the file structure and documentation. commit 9226d1a6e38819032a12df5ffd1b5bb92cc4a763 Author: Alan Garny Date: Sat Mar 23 13:19:44 2013 +1300 Allow Google Analytics on all pages of our web site. commit 0ecc3edb4acd62416940120e252e7d5097252cea Author: Alan Garny Date: Sat Mar 23 13:13:30 2013 +1300 Allow Google Analytics on all pages of our web site. commit a2d941cdd62819560f546886070a6673d1551e71 Author: Alan Garny Date: Sat Mar 23 13:05:13 2013 +1300 Allow the tracking of emails, downloads and external links in Google Analytics. commit 7b59892454ea3156e669e64a2bff69bf576ddff3 Author: Alan Garny Date: Sat Mar 23 12:34:31 2013 +1300 Some minor cleaning up. commit 95c9947ed2c7df7be85ddb7dc70e9c00bd2e820d Author: Alan Garny Date: Sat Mar 23 12:19:30 2013 +1300 Some minor cleaning up. commit f8857d7a11d027fe0bec3c358cb3d8b0320f6f26 Author: Alan Garny Date: Fri Mar 22 19:03:59 2013 +1300 Added support for Google Analytics to our main and download web pages. commit 3b32bccc8a7de3f20f8a9edc4eac4b4593335acf Author: Alan Garny Date: Fri Mar 22 18:38:58 2013 +1300 Better handling of variables defined in imported components (#112). commit eb53d6763379faa39fd6c4bd4dfaa5c57801dee4 Author: Alan Garny Date: Fri Mar 22 15:14:09 2013 +1300 Minor cleaning up of our main CMake file. commit 057dcd4f19a74735c923986371c4562821589e02 Author: Alan Garny Date: Fri Mar 22 15:11:47 2013 +1300 Minor cleaning up of our main CMake file. commit fbe8fd31990de2fed22e15529b24f4e7dd9ab4bf Author: Alan Garny Date: Thu Mar 21 18:35:41 2013 +1300 New snapshots. commit efbf224365ee6644e5b9d3e50c8a3231fbf9e989 Author: Alan Garny Date: Thu Mar 21 18:18:56 2013 +1300 Done on reworking our CellML-related code. commit 7e23694c73cd860c28bc09324f52d3e9558a84c5 Author: Alan Garny Date: Thu Mar 21 15:20:38 2013 +1300 Some minor cleaning up. commit 014e6817919a64ad6e0f6c2f406a8c9f0bedcbd7 Author: Alan Garny Date: Thu Mar 21 14:54:48 2013 +1300 Revert "Some minor cleaning up." This reverts commit fbcbd5148ff8da11041f7f93db45846dfe92976e. commit 3107eb762ce36e3f32209257100a20873668222a Author: Alan Garny Date: Thu Mar 21 14:51:26 2013 +1300 Wrong casting which worked on Linux, but not on Windows and OS X. commit 3e754bceab1b3065c4d98f497f58d44d82f6118e Author: Alan Garny Date: Thu Mar 21 14:38:48 2013 +1300 Some minor cleaning up. commit 203dc5684447591d92bef88b7e7ab8fa1f5a3dc5 Author: Alan Garny Date: Thu Mar 21 13:45:24 2013 +1300 Fixed a small issue with showing/hiding menus. commit 373dd5cb318cf99e048e81fe3ce4d3fa12e30149 Author: Alan Garny Date: Thu Mar 21 11:37:54 2013 +1300 Forgot to remove a trace. commit 345be41870a838eb984cf04a50dbecac7bece648 Author: Alan Garny Date: Thu Mar 21 11:29:54 2013 +1300 Fixed a crash that occurred when trying to run OpenCOR after having manually deleted a plugin. commit d6506a0f65b31b4ad83c0cf54685af18bbcf8d80 Author: Alan Garny Date: Thu Mar 21 11:07:06 2013 +1300 Disabled the Raw and Raw CellML views in preparation of version 0.1. commit c2e57520af3ca78b3aba4b5f30ffddf44cf00e0f Author: Alan Garny Date: Thu Mar 21 08:16:25 2013 +1300 Disabled the Raw and Raw CellML views in preparation of version 0.1. This means that we also disabled our QScintillaSupport and Viewer plugins since they are not used by other plugins. commit b6427455ab354aba81abdb7e4b88f10411d3bb14 Author: Alan Garny Date: Wed Mar 20 20:22:49 2013 +1300 Fixed a silly mistake. commit f94bb3c3d21004ed6153dc855e31104aef345d0d Author: Alan Garny Date: Wed Mar 20 19:33:49 2013 +1300 Better handling of a snapshot information which is now retrieved within our CMake script and also used as part of our packaging. commit 32c96e68d19267e77da5eb9fdf88d9496aaf74fd Author: Alan Garny Date: Wed Mar 20 18:46:53 2013 +1300 Some work on our CellML-related code. commit 30cd44736f380b318de9204393aac4c62225d6b7 Author: Alan Garny Date: Wed Mar 20 17:04:41 2013 +1300 A stupidily HUGE commit regarding our CellML-related code. Note that, at this stage, the CellML annotation plugin doesn'\''t work anymore. We need to do some more work on our new RDF code. OpenCOR doesn'\''t use its own internal representation of a CellML file anymore. It was just going to be too cumbersome in the long run. The only thing we are keeping is the RDF stuff since we did add quite a bit of a layer on top of what the CellML API offers. In the process, we also improved our use of ObjRef. commit dec04c12bebe2f76d94058bf79f2062a0a81acf2 Author: Alan Garny Date: Wed Mar 20 16:36:42 2013 +1300 Some fixes/safeguards to our simulation plugin. commit b2c7f7d14ea10390623ca007883d3be56ade2f1a Author: Alan Garny Date: Tue Mar 19 13:45:29 2013 +1300 Fixed a small issue with a constant being imported, in which case we cannot use our internal representation of it. commit 1bc4e49e797ff35cc2ba0c4a071a7313a567ed67 Author: Alan Garny Date: Tue Mar 19 11:48:06 2013 +1300 Some work on making sure that the zoom factor of our plot is valid. commit afdc1d9ececb5b3ad746f3f25dbb69dc215a7ba1 Author: Alan Garny Date: Tue Mar 19 11:20:24 2013 +1300 Some work on making sure that the zoom factor of our plot is valid. Also some minor cleaning up. commit 768abc1b2e47c7af062815de18ef06f978648e54 Author: Alan Garny Date: Tue Mar 19 09:33:34 2013 +1300 Some minor cleaning up. commit 68d3c646d18f7045478399596a90aed94c460b0e Author: Alan Garny Date: Mon Mar 18 18:04:53 2013 +1300 Addressed an issue with a plot'\''s axes (#112). commit b47fc7fb874eb78d949b81f3e25c4c24a9c0836b Author: Alan Garny Date: Mon Mar 18 14:54:44 2013 +1300 Fixed a translation. commit 3dd62d4e2a0a030fcb1d37e133e1affe3b2afa33 Author: Alan Garny Date: Mon Mar 18 14:49:30 2013 +1300 Updated our CellML icons. commit 3c06e6390305cd4dd3d8ae9379ef01472bba406c Author: Alan Garny Date: Mon Mar 18 14:20:11 2013 +1300 Updated the developer'\''s documentation following the release of Xcode 4.6.1. commit 0431ee52e8d71ea0cfc900705875940f44563daf Author: Alan Garny Date: Mon Mar 18 14:16:21 2013 +1300 Fixed some translations. commit cf9e3b2546d41c6bbad5bd5cb16611b71c783a76 Author: Alan Garny Date: Mon Mar 18 14:15:50 2013 +1300 Can now display the version of a snapshot of OpenCOR (e.g. 20130318) (#155). commit b8328c6a2a8fe0aeb7badbc0874fe6d4bd6bb8e4 Author: Alan Garny Date: Thu Mar 14 16:43:55 2013 +0100 Some minor refactoring. commit ae93ff843d47a83fa5afc58661cc42de77190d22 Author: Alan Garny Date: Thu Mar 14 15:37:11 2013 +0100 New snapshots. commit edc61e10a92b64808337140a0b955ee4d994ee4b Author: Alan Garny Date: Thu Mar 14 15:07:35 2013 +0100 Addressed the issue of double clicking on a CellML file (closes #156). The problem was that the existing CellML file(s) would take time to handle since we were in simulation mode and therefore needed to retrieve its (their) runtime. Now, since we would only later on create some connections, including the one that would allow OpenCOR to handle a file opening request from the operating system, this means that the operating system would send us a file opening request, but we wouldn'\''t handle it. So, the fix consisted of creating the connections as early as possible and certainly before opening existing CellML files... commit 5cfca45e1af52ca15e8010589e1fc12e19e088ee Author: Alan Garny Date: Thu Mar 14 14:45:20 2013 +0100 Some minor comment editing. commit c18bec822d976be1e57ae7877b5bb6b7ecd85f1e Author: Alan Garny Date: Thu Mar 14 14:12:02 2013 +0100 Done with showing/hiding actions based on the selected view (closes #150). commit 71140f71cc2c0da5f8e510513986477e5645a01a Author: Alan Garny Date: Fri Mar 8 14:36:11 2013 +0100 New snapshots. commit 8cc2eecf3d450dea69f448aba3960fe7b85b869a Author: Alan Garny Date: Fri Mar 8 14:35:27 2013 +0100 Upgraded to version 4.10.1 of the Oxygen library. commit a09b32f2f2c8b6092b76e992e97a3a6ffe456f9b Author: Alan Garny Date: Fri Mar 8 14:06:09 2013 +0100 Improved our plotting widget so that it can now plot anything including non-finite values (#112). commit 78abeb13ff06f19adfaa220e340b13d5f3ef2cbf Author: Alan Garny Date: Thu Mar 7 18:57:45 2013 +0100 New snapshots. commit 19b2c59d2081ba89e55faa3db471e7baf8263cfa Author: Alan Garny Date: Thu Mar 7 18:46:05 2013 +0100 Done with showing/hiding actions based on the selected view (closes #150). commit 27e1f4688c66b6e1bb54d691eaf7b93e197be3ea Author: Alan Garny Date: Thu Mar 7 16:53:49 2013 +0100 Some work on showing/hiding actions based on the selected view (#150). Also some minor cleaning up. commit 155b009ce932e88267458b9165c51f19f38e5275 Author: Alan Garny Date: Thu Mar 7 15:39:40 2013 +0100 Fixed the issue of the IDA solver not being able to retrieve consistent initial conditions (closes #153). commit 1f9d41f231c345fabb513b00733b173e8a27b747 Author: Alan Garny Date: Thu Mar 7 15:03:52 2013 +0100 Fixed the issue of the IDA solver not being able to retrieve consistent initial conditions (closes #153). commit 2291984be879c9cfae3868c8a7598d625cd288c0 Author: Alan Garny Date: Thu Mar 7 14:51:09 2013 +0100 Fixed the issue with Infinite/NaN axes crashing QwtPlot (closes #152). commit f01b4dd4a319857a779ae066065fc2ee25ed5611 Author: Alan Garny Date: Thu Mar 7 14:40:04 2013 +0100 Temporarily (really) removed the marker in our graph panel (#112). commit 19b0989cd3a714c19d54ff0444e4e5fba0e1b2d7 Author: Alan Garny Date: Thu Mar 7 11:45:38 2013 +0100 Some work on showing/hiding actions based on the selected view (#150). commit 355cbb7bbc545db5ce70918e7cc89903c81c5666 Author: Alan Garny Date: Thu Mar 7 11:22:22 2013 +0100 Fixed an issue when no appropriate solver is available (closes #151). Also some minor refactoring. commit c2ba4790e35d2c605b551228515925c9bd1ed089 Author: Alan Garny Date: Thu Mar 7 10:46:59 2013 +0100 Some refactoring for our work on showing/hiding actions based on the selected view (#150). commit 7feb5d3072cdd50e09d7948e31abf4e3c581b67b Author: Alan Garny Date: Thu Mar 7 09:41:26 2013 +0100 Some minor cleaning up. commit 26d3cd558b5804aff3ddbb82a2b72c3b763fee4d Author: Alan Garny Date: Wed Mar 6 20:38:12 2013 +0100 Replaced a qobject_cast with a static_cast since the former didn'\''t work on Linux. commit e6c0ab127b1d620d506a9cb86baeaf64d69e7163 Author: Alan Garny Date: Wed Mar 6 18:59:27 2013 +0100 Some minor cleaning up. commit e75938adabacffc57c831f50df63cbcacc3a9d04 Author: Alan Garny Date: Wed Mar 6 18:48:14 2013 +0100 Minor editing of a comment. commit 9a07fbefe29463426c4b23218dea449e319b2cb7 Author: Alan Garny Date: Wed Mar 6 18:27:17 2013 +0100 Reverted a couple of Unicode-related changes which are actually proving necessary on Windows. commit d692006c07d9625752b6cd3486312f84a34b699e Author: Alan Garny Date: Wed Mar 6 18:04:43 2013 +0100 Previously enabled more warnings on Linux, resulting in some fixes here and there. commit c2b5fb24ad05c43c04da392af86e3007163ef8b8 Author: Alan Garny Date: Wed Mar 6 17:53:57 2013 +0100 Enable more warnings on OS X, resulting in some fixes here and there. commit b13e9cfe5636fad2d8307734a39c81b5a6bfe438 Author: Alan Garny Date: Wed Mar 6 17:15:59 2013 +0100 Some minor cleaning up of our common CMake file. commit f45f339298497c4385585c3f8f16d592d15ccfe8 Author: Alan Garny Date: Wed Mar 6 16:32:52 2013 +0100 Some minor cleaning up for our LLVM plugin. commit d888c21e77a5e06f34f69096e39d25fda1e85a17 Author: Alan Garny Date: Wed Mar 6 15:45:40 2013 +0100 Some minor cleaning up of our CMake files. commit 30d12603a2b702888367db87cf23c0acbd8c9cbd Author: Alan Garny Date: Wed Mar 6 10:17:42 2013 +0100 Fixed a couple of issues which caused problems when trying to use an invalid CellML file for simulation. commit a6cbfcd953deaaf06e20e2d96e81b69df0ad4173 Author: Alan Garny Date: Wed Mar 6 09:53:31 2013 +0100 Temporarily removed the marker in our graph panel (#112). commit aade19e2ce4fda51d1b29cce8dd896c7b95ecff4 Author: Alan Garny Date: Wed Mar 6 09:53:09 2013 +0100 Improved the panning of our graph panel'\''s plot (#112). commit 3b526002f0877d099dd8ab3cc7ab89015f80e086 Author: Alan Garny Date: Tue Mar 5 18:44:04 2013 +0100 New snapshots. commit 83be53cb91cbd41184b4411b0a471afe0dc97e72 Author: Alan Garny Date: Tue Mar 5 18:31:20 2013 +0100 Minor fix to avoid some warnings on Linux. commit 32e8f5185af650718223170167b0b432f7bce5c6 Author: Alan Garny Date: Tue Mar 5 17:53:00 2013 +0100 Show the coordinates of a region to be zoomed within our graph panel (#112). commit ef3c76dba928848e46eef4da11f9718d3b137270 Author: Alan Garny Date: Tue Mar 5 16:28:18 2013 +0100 Prevent interaction with our graph panel'\''s plot during a simulation (#112). commit 33e4c679287f0a3ac6aaa6d7d7cf354f18eb32a4 Author: Alan Garny Date: Tue Mar 5 15:16:22 2013 +0100 Can now show the coordinates of a point within our graph panel (#112). commit 8efd53fea3153d79347abfddd9641f8f6d1b67dd Author: Alan Garny Date: Tue Mar 5 15:13:20 2013 +0100 Can now show the coordinates of a point within our graph panel (#112). commit 615257dfb3310f6b0440c524840dcdd281fc8df9 Author: Alan Garny Date: Tue Mar 5 11:33:16 2013 +0100 Upgraded QScintilla to version 2.7.1. commit 374d5b214b87ecdb6737ccd4bbc6c7cefd436e0f Author: Alan Garny Date: Tue Mar 5 11:14:24 2013 +0100 Can now zoom a region within our graph panel (#112). commit 0d48c64da37fce1f65ec17a6f61b2534bb26d847 Author: Alan Garny Date: Mon Mar 4 17:03:09 2013 +0100 Can now pan our graph panel (#112). commit 4d1836fce8b5271e11673811ee3e4ad95a555a82 Author: Alan Garny Date: Fri Mar 1 14:47:11 2013 +0100 Can now pan our graph panel (#112). commit 1f13dc3c9c87f2697359a1c76e77059e95908fd6 Author: Alan Garny Date: Fri Mar 1 14:04:11 2013 +0100 Some work on our simulation plugin (#112). commit f0870983f2300537a56ead4ec554190cfe958964 Author: Alan Garny Date: Fri Mar 1 10:46:48 2013 +0100 Some work on our simulation plugin (#112). commit f377b940c56aeff7a0d9b8f4303b6b6e84f0d730 Author: Alan Garny Date: Thu Feb 28 20:02:25 2013 +0100 Some work on our simulation plugin (#112). commit 9015e684b73e367439cd5158736c3e0853188fb8 Author: Alan Garny Date: Thu Feb 28 18:36:51 2013 +0100 Some work on our simulation plugin (#112). commit 88e577f09097257ef5273ab1761d3d0ab2feef13 Author: Alan Garny Date: Thu Feb 28 18:33:51 2013 +0100 Quite a bit of work on our simulation plugin (#112). commit 11c3e2639cd1562f6ed76402e50da40b4bb4f1a1 Author: Alan Garny Date: Thu Feb 28 15:23:44 2013 +0100 Fixed a small issue with our plotting widget (#112). commit 4a7aa01383ea93ef188f9649e7506619ee75d6b0 Author: Alan Garny Date: Thu Feb 28 14:37:58 2013 +0100 Quite a bit of work on our simulation plugin (#112). commit f0dcf8b8a83d698570de33ce32e97c10fa0cbd8f Author: Alan Garny Date: Thu Feb 28 14:37:31 2013 +0100 Improved our property editor with regards to letting people know when a property has been un/checked. commit 30de1c25b2b907bf618ac2b711f781435ed0637c Author: Alan Garny Date: Wed Feb 27 14:07:50 2013 +0100 Quite a bit of work on our simulation plugin (#112). commit c712cd362728ec6c9bbedaa1234baf58a2356199 Author: Alan Garny Date: Tue Feb 26 17:27:46 2013 +0100 Fixed a small issue with simulations which are too fast to run (!!) (#112). Also, some minor cleaning up. commit 695b00d21d0127dacf03194104b839de5e47e763 Author: Alan Garny Date: Tue Feb 26 16:55:10 2013 +0100 Some minor cleaning up and refactoring. commit 511b1efc78c0ae22ef857bf314da0e6ae8dc0778 Author: Alan Garny Date: Tue Feb 26 14:09:11 2013 +0100 Prevent interaction with the plot during a simulation (#112). commit 0d01f7b43d5a5de469c9c540463f1c3d51eaaec1 Author: Alan Garny Date: Tue Feb 26 13:50:09 2013 +0100 Allow zooming in/out individual axes using the mouse (#112). commit 1b3eb786f8b3e3d61150e2adb14e7795635eedd1 Author: Alan Garny Date: Sun Feb 24 17:19:04 2013 +0100 Some minor cleaning up (#112). commit 298c98dd32dc34ff79f7eb1016c59ccefdac8dd0 Author: Alan Garny Date: Sun Feb 24 17:17:48 2013 +0100 Some minor refactoring and cleaning up (#112). commit 4e499385599dcf1b83eb0449c67b9a20f9b174c2 Author: Alan Garny Date: Sun Feb 24 16:52:34 2013 +0100 Some minor refactoring (#112). commit e831e54fbd0d1485d70a6bd5b0571776a43e2909 Author: Alan Garny Date: Sun Feb 24 16:36:23 2013 +0100 Allow zooming in/out individual axes using the mouse (#112). commit ca77f61b79bfd06ffbeb06ce0b06064727803b55 Author: Alan Garny Date: Sun Feb 24 14:41:21 2013 +0100 Allow zooming in/out using the mouse wheel (#112). commit a47c25e83a089ea25a4223214641c14ac926482e Author: Alan Garny Date: Sat Feb 23 16:56:47 2013 +0100 What was supposed to help with the retina display (on OS X) actually makes things worse! In our simulation plugin, we have check boxes for the different parameters that make up a model. Now, without the two deleted lines, everything works as expected, but if we have the deleted lines, then the check boxes don'\''t show up!? commit fe21dff143f7b378f1e0ffc0fc67aa7ca3700d56 Author: Alan Garny Date: Sat Feb 23 16:40:42 2013 +0100 Some minor OS X related improvements. commit cfefe46b6282abe3ebdc10eb4f25041e45c6d3e5 Author: Alan Garny Date: Sat Feb 23 12:51:06 2013 +0100 Some minor cleaning up. commit 5ae68fe1be5a3deb751749d8c9abdf11372d1f2b Author: Alan Garny Date: Sat Feb 23 11:58:15 2013 +0100 Fixed a small issue of when we have successfully run a simulation and then want to run a simulation which requires too much memory: we were not resetting our graph panel and that obviously caused OpenCOR to crash (#112). commit 379117e1c387186eb5009b4989ae708d21d6aa00 Author: Alan Garny Date: Fri Feb 22 18:48:59 2013 +0100 To double click on a plot will copy its contents to the clipboard (#112). commit 084546abae986220166098b34b31e4bd2ee0ce22 Author: Alan Garny Date: Fri Feb 22 17:37:45 2013 +0100 Some minor cleaning up. commit 203f5a37cb9de3aba2b1ada7fa0a65fd21f4dfb9 Author: Alan Garny Date: Fri Feb 22 10:35:36 2013 +0100 Improved our plotting of simulation data (#112). commit 2b3404d86ecdb03fe3aa27c6963084ca6fae1a78 Author: Alan Garny Date: Fri Feb 22 10:02:22 2013 +0100 Some minor refactoring (#112). commit b7ea08a542a465e3f348d6f6660f9e4a6eee1071 Author: Alan Garny Date: Thu Feb 21 18:54:06 2013 +0100 Fixed a minor issue with our solvers panel whereby a property with VOI unit wouldn'\''t show the correct tooltip (#112). commit 7d2a5eabd6485dbe228a0b29aa708a68e4e0c79e Author: Alan Garny Date: Thu Feb 21 18:39:07 2013 +0100 Improved our plotting of simulation data (#112). We only plot the new data as opposed to replotting everything everytime. commit 4316dcea8ea56243393140b76df7f994fe2ff2d8 Author: Alan Garny Date: Thu Feb 21 18:13:01 2013 +0100 Improved our plotting of simulation data (#112). We only plot the new data as opposed to replotting everything everytime. commit 359868fc9b59816368d88d5f94125fc40b9027dd Author: Alan Garny Date: Thu Feb 21 15:42:26 2013 +0100 Fixed a small threading issue with our simulation worker (#112). commit c810cd493503da8c0d8ad0c72e34cac0bca49343 Author: Alan Garny Date: Thu Feb 21 15:10:31 2013 +0100 Some minor refactoring for our graph panel (#112). commit 7e26e652ecabf6283c61bed686d3c6f4e39786db Author: Alan Garny Date: Thu Feb 21 11:33:32 2013 +0100 Improved our simulation work loop (#112). commit 119d3f0d7310ecc26df00ab471fabcd85078002a Author: Alan Garny Date: Wed Feb 20 17:34:16 2013 +0100 Done with supporting the resetting of model parameters (#112). Also fixed an issue when closing OpenCOR when a simulation (i.e. a thread) is still running. commit 8256b224970de8a56f9af0828fbfa86f6492c41d Author: Alan Garny Date: Wed Feb 20 14:01:44 2013 +0100 Fixed a memory leak. commit 19d519392cd155a64f3522bc26a6e247128ee515 Author: Alan Garny Date: Tue Feb 19 18:06:30 2013 +0100 New snapshots. commit 34af101fe958b4e5fba7ba843ea78521240a11da Author: Alan Garny Date: Tue Feb 19 17:59:52 2013 +0100 Some work on supporting the resetting of model parameters (#112). commit 4a8fba3d2b29c5e70ffc1770914a1dcf283a2a82 Author: Alan Garny Date: Tue Feb 19 16:32:31 2013 +0100 Minor update to our developer documentation. commit cdc6a632a56975750cd03f862c4698d7c0d74d90 Author: Alan Garny Date: Tue Feb 19 16:10:36 2013 +0100 Fixed a small problem which prevented us from seeing the progress of another simulation on Windows and Linux. commit f187377019cc0e6c387f709a86f82554aa1632a7 Author: Alan Garny Date: Tue Feb 19 15:45:21 2013 +0100 Minor editing of a comment. commit 8bbddc0b8a8e2f846b871b07907e15adacb7f2a2 Author: Alan Garny Date: Tue Feb 19 15:26:30 2013 +0100 Slight improvement to our simulation plugin (the enabling/disabling of the CSV export was improved). commit f38aed29dc09ebaba497f16a5bbf74b677a710f6 Author: Alan Garny Date: Tue Feb 19 14:27:56 2013 +0100 Make sure that several simulations can not only be run at once, but that their progress can be monitored accurately. commit ccc82130bbe9ef1953d67335e909d473c1f2ce39 Author: Alan Garny Date: Tue Feb 19 11:07:53 2013 +0100 Make sure that the CSV export action gets properly enabled/disabled. commit 315beea91f9ff417cb91ceb46ca6d5453d95c661 Author: Alan Garny Date: Mon Feb 18 18:59:49 2013 +0100 New snapshots. commit 2356a5c0450c6a028e8c01174374e7b277680e17 Author: Alan Garny Date: Mon Feb 18 18:25:11 2013 +0100 Greatly improved OpenCOR'\''s responsiveness when it comes to running a simulation (#112). commit 3e5adb97ae261f7e8d3c13b91f4cb80e7f01f043 Author: Alan Garny Date: Mon Feb 18 15:09:38 2013 +0100 Oops! commit 4cf64d615b3d7b9191a7071d11332709a6ca9ae3 Author: Alan Garny Date: Mon Feb 18 15:06:29 2013 +0100 Greatly improved OpenCOR'\''s responsiveness when it comes to running a simulation (#112). commit f5c89fd467ebba9e554dbd328885112e4f38097e Author: Alan Garny Date: Sun Feb 17 19:18:38 2013 +0100 Quite a bit of refactoring of our threaded code (#112). commit b689fe5e2ed791a68176057cf58edbfca021a614 Author: Alan Garny Date: Sun Feb 17 16:12:32 2013 +0100 Some minor refactoring of our threaded code (#112). commit 04d0f8e51d9ff71c4b41a55d6689fd1160e1ed93 Author: Alan Garny Date: Sun Feb 17 15:34:41 2013 +0100 Disabled the creation/removal of graph panels, as well as debugging feature (which, anyway, isn'\''t implemented) since we will likely not be supporting those in time for the our March release. commit 83639836707ddb2dfbcae1b7052aa8e77f53e894 Author: Alan Garny Date: Sat Feb 16 15:25:24 2013 +0100 Improved memory allocation for a simulation. commit 803d162ce9b7ec7e79c7b81bacaba55365786d61 Author: Alan Garny Date: Sat Feb 16 14:38:28 2013 +0100 Improved memory allocation for a simulation. commit 5d9e5fd4899535d436488c282774604d67cfb9ac Author: Alan Garny Date: Sat Feb 16 14:36:29 2013 +0100 Improved memory allocation for a simulation. commit 3a3660163e168c6743477570a899f7326dbcd965 Author: Alan Garny Date: Sat Feb 16 12:28:02 2013 +0100 Allocate results data memory only when actually necessary. commit 55debdef8e6c1d896ba4091567158ce0b02ce0ec Author: Alan Garny Date: Sat Feb 16 11:53:48 2013 +0100 Allocate results data memory only when actually necessary. commit c6eb302c8b320d40db4d009d762e2f3e9be093af Author: Alan Garny Date: Sat Feb 16 11:06:36 2013 +0100 Some minor improvements. commit 6c7582a134e379ace0646572bb6eba2757fa2313 Author: Alan Garny Date: Fri Feb 15 18:52:04 2013 +0100 Improved the way we let people know about the progress of a simulation. commit d7fec9abe5df4c40cc42b2bb840da7b250df985a Author: Alan Garny Date: Fri Feb 15 14:11:32 2013 +0100 Some minor cleaning up. commit 992bfcdf77e2195eca3dfa2d73a3ddf6062880f4 Author: Alan Garny Date: Fri Feb 15 13:24:10 2013 +0100 Improved the way we let people know about the progress of a simulation. commit 77d02e73e47614f5e8e27a4be4bd4df85dd58b09 Author: Alan Garny Date: Thu Feb 14 16:56:30 2013 +0100 Some minor cleaning up. commit f2cfdd8909fb364cc71edee51245289d6b2eecb8 Author: Alan Garny Date: Thu Feb 14 16:51:07 2013 +0100 Some minor cleaning up. commit dc19c2c3702e0913e9fff102f28e53019e457680 Author: Alan Garny Date: Thu Feb 14 16:48:44 2013 +0100 Some minor improvements to our progress bar. commit b1d65a94269e792497a38e39558318e5472acd6c Author: Alan Garny Date: Thu Feb 14 11:55:01 2013 +0100 Some minor cleaning up. commit 9d7815d12c6ca50e1f160e0996296cf05f48cc6d Author: Alan Garny Date: Thu Feb 14 11:43:18 2013 +0100 Some minor cleaning up. commit b9d5c08ce483de85a638f60dc3678e49617d7678 Author: Alan Garny Date: Thu Feb 14 11:28:38 2013 +0100 Minor update to our developer documentation. commit 2c33df9445e8ed7ff22e128efa624e6abb6265ec Author: Alan Garny Date: Thu Feb 14 11:07:36 2013 +0100 Some minor cleaning up. commit 214cb9e0e3364eb0d7a33c919491be53f283a2bf Author: Alan Garny Date: Thu Feb 14 11:01:31 2013 +0100 Some minor cleaning up. commit 4cbf3959572fecb1eaabb3c7ac071fcdffc35d16 Author: Alan Garny Date: Wed Feb 13 20:35:54 2013 +0100 Edited a Qt-related bug comment. commit fd6cc0c3784e9aa75e0cf4ab18bef1ccd8705d04 Author: Alan Garny Date: Wed Feb 13 18:42:07 2013 +0100 New snapshots. commit ff3983d49de8dfd1a1569003fba564a32ce789d6 Author: Alan Garny Date: Wed Feb 13 18:39:37 2013 +0100 Done with exporting to CSV (closes #32). commit b7ac2aba2d9448a7a9fb188d17df0f0d69c569c6 Author: Alan Garny Date: Wed Feb 13 18:02:25 2013 +0100 Done with exporting to CSV (closes #32). commit 85504167061e3ba519d803429179d4e26de3ad26 Author: Alan Garny Date: Wed Feb 13 16:52:27 2013 +0100 Some minor cleaning up. commit ebbbb69992b241832a58cd912d224551ced89ef5 Author: Alan Garny Date: Wed Feb 13 16:29:35 2013 +0100 Done with being able to run two simulations that require an NLA solver (closes #146). commit b6598fd55c5a1889d0681a3a80d9e18e5dcdb228 Author: Alan Garny Date: Wed Feb 13 15:05:46 2013 +0100 Improved our globalInstance() method. commit 62fdd6ebcb14dfd7fc1c31ae9eca68a3b617eb56 Author: Alan Garny Date: Wed Feb 13 13:16:14 2013 +0100 Some work towards being able to run two simulations that require an NLA solver (#146). commit adf5d1212da30626a0c4dbb25c81fc72eebcc0ff Author: Alan Garny Date: Wed Feb 13 13:15:51 2013 +0100 Some work towards being able to run two simulations that require an NLA solver (#146). commit fb29aafb0779eafb6d2244cc7c94d2bba1388788 Author: Alan Garny Date: Wed Feb 13 10:03:42 2013 +0100 Slightly improved our settings code. commit bbe7f8645de6b501a19c8d9f6e33b746d922ea1e Author: Alan Garny Date: Tue Feb 12 17:39:49 2013 +0100 Some work towards being able to run two simulations that require an NLA solver (#146). commit 7fbf024896d74da8481b239cc878525d35506a58 Author: Alan Garny Date: Tue Feb 12 17:29:54 2013 +0100 Some minor cleaning up. commit c886ad8e5cb075ec907d0fa50e807233da5cdbfa Author: Alan Garny Date: Tue Feb 12 17:13:58 2013 +0100 Some work towards being able to run two simulations that require an NLA solver (#146). We still need to handle the case where one or several NLA systems need to be solved to initialise some parameters. commit 1e77d7d295a23aa9932d1dac2c775244b3a27c16 Author: Alan Garny Date: Tue Feb 12 15:55:03 2013 +0100 Re-specify an organisation/application name for QSettings. Also some minor cleaning up. We used to have something like QSettings(qApp->applicationName()) and it was working fine, except that there were a few cases where it wasn'\''t convenient to get access to qApp. So, we decided to use QSettings() without any argument (after all, the documentation says that by default QSettings will use the application'\''s name, if nothing is given), but that clearly doesn'\''t work as expected when using a plugin approach to software development. So, instead, we now use QSettings(SettingsApplicationName) with SettingsApplicationName being a string constant set to "OpenCOR". commit aeda1011e9c980f4786708df4f806864feab90f1 Author: Alan Garny Date: Tue Feb 12 13:43:04 2013 +0100 Some minor cleaning up. commit 14956af7274ffbe192d97043b4b954aa31f3f6f1 Author: Alan Garny Date: Tue Feb 12 13:21:34 2013 +0100 Improved some of our castings. commit 27ed17d45a8f4cd3747dd57f9e72b89a860253bf Author: Alan Garny Date: Tue Feb 12 11:40:50 2013 +0100 Some minor cleaning up. commit f657a93dc9b45f061df570bdd99c9b1708621b87 Author: Alan Garny Date: Tue Feb 12 11:38:24 2013 +0100 Some minor cleaning up. commit ac2d6e15080c21b52ce570fc6b4ae23ed6126005 Author: Alan Garny Date: Tue Feb 12 10:37:49 2013 +0100 Too much cleaning up is not always good on Windows. commit ce19e37e3cc0cdcb157ef08a24b4084659e30bf9 Author: Alan Garny Date: Mon Feb 11 17:52:30 2013 +0100 Some minor cleaning up. commit 88dbf15ae8dafbe21494a944b0b3050b0c3a72c0 Author: Alan Garny Date: Mon Feb 11 16:35:32 2013 +0100 Some minor cleaning up. commit 21a552cf441a7717248a1240ab13be3c42a9b683 Author: Alan Garny Date: Mon Feb 11 16:05:04 2013 +0100 Some minor cleaning up. commit 0945ae0fb987d38990dea653320511267c73d763 Author: Alan Garny Date: Mon Feb 11 14:43:27 2013 +0100 Improved the shutting down of OpenCOR (and, at the same time, fixed a memory releasing issue in our simulation plugin). commit 10f2cc366333308a2879556b8aeb041ac953a37d Author: Alan Garny Date: Mon Feb 11 14:02:06 2013 +0100 Some minor cleaning up (#112). commit e0f62e84b6d2915ef84fb32e2bae4fcf76c5b067 Author: Alan Garny Date: Mon Feb 11 14:01:08 2013 +0100 Some minor cleaning up (#112). commit ff4dda2565d6f94f0e23e33247e01bbbefc7f161 Author: Alan Garny Date: Mon Feb 11 11:59:26 2013 +0100 Quite a bit of refactoring (#112). commit b91da6e2bc9d6d617fb2b5b45d1ce041fd01fdce Author: Alan Garny Date: Mon Feb 11 10:17:09 2013 +0100 Removed the sunken border in our graph panels. commit 60fbf926491f152aa3cb4931d86d8dbab55c09de Author: Alan Garny Date: Mon Feb 11 09:42:25 2013 +0100 Some minor cleaning up. commit 1da83e45f5a2d83816d0207730245a1a3a34da9f Author: Alan Garny Date: Fri Feb 8 18:20:49 2013 +0100 Check how much memory is availble before running a simulation (closes #147). commit 0433b3ecc7030fdc8adfece1084cfd08859b66e2 Author: Alan Garny Date: Fri Feb 8 17:46:05 2013 +0100 Check how much memory is availble before running a simulation (closes #147). commit a9f97e7a28feed9baed2f237ad24fdf37caf2057 Author: Alan Garny Date: Fri Feb 8 17:38:55 2013 +0100 Some minor refactoring. commit 7c470615ae2ea8e931eca73b056f6af6b17a7b03 Author: Alan Garny Date: Fri Feb 8 16:44:52 2013 +0100 Some minor cleaning up. commit b4d97af2d05915a88bb0cbf995b423796ef0b803 Author: Alan Garny Date: Fri Feb 8 15:52:05 2013 +0100 Some minor cleaning up. commit 841e0cefcb1e1e51d3e1c542da0de18ed45a81ab Author: Alan Garny Date: Fri Feb 8 12:46:18 2013 +0100 Retrieve the available amount of physical memory. commit 1f3c3e5673c083a0e6469466cb9b718c114a0311 Author: Alan Garny Date: Fri Feb 8 11:59:44 2013 +0100 Retrieve the available amount of physical memory. commit 281b2b2179c9ea005f342126eab241ffcbadc3d2 Author: Alan Garny Date: Thu Feb 7 19:40:20 2013 +0100 Retrieve the total physical memory available. commit ddafbdef16161732d271a84a878d65a576a199e1 Author: Alan Garny Date: Thu Feb 7 19:27:19 2013 +0100 Retrieve (on Linux and OS X, so far) the total physical memory available. commit 83a42f16693aac7904e20778b230682e2f8b7723 Author: Alan Garny Date: Thu Feb 7 18:25:03 2013 +0100 Retrieve (on OS X, so far) the total physical memory available. commit c6c878f1f66c8b67fb5c3e42c8b057d240d55a6d Author: Alan Garny Date: Thu Feb 7 18:10:20 2013 +0100 Retrieve (on OS X, so far) the total physical memory available. commit 6c5ed2c3f3c6cd0c433e38a3d390ece80b05015f Author: Alan Garny Date: Thu Feb 7 18:08:11 2013 +0100 Some cleaning up. commit 6686a1f5eecb0d7b34e476bb960d33ebf908da75 Author: Alan Garny Date: Thu Feb 7 16:16:19 2013 +0100 Fixed some frustrating warnings! commit c87d01b5a351bedf9ae6e0d0a1db390b50001672 Author: Alan Garny Date: Thu Feb 7 15:03:16 2013 +0100 Improved our detection of a user'\''s OS. commit e0ce5d4b2487e519a8fd50128d5bb107b3ce4a77 Author: Alan Garny Date: Thu Feb 7 14:13:43 2013 +0100 Done with properly using Q_OS_xxx (closes #148). Also some minor cleaning up. commit 6b0a93170d8ba24c058a2faf717fc337c538dd7a Author: Alan Garny Date: Thu Feb 7 11:25:53 2013 +0100 Some minor cleaning up. commit 76d9eca2a721441ddfcdc9b9037f50ab50277d10 Author: Alan Garny Date: Thu Feb 7 10:47:10 2013 +0100 Recognise Windows 8 as the host machine. commit 97f5ce322e7c213e0a9bcce956d257363d2068fa Author: Alan Garny Date: Wed Feb 6 21:14:23 2013 +0100 Was missing a couple of Qt DLLs for deployment on Windows. commit 3169fc4a242d4fbb592f9a209855bf69e2626c72 Author: Alan Garny Date: Wed Feb 6 20:11:35 2013 +0100 New snapshots. commit 420b880aa290470229c149f8608bee03697aaf80 Author: Alan Garny Date: Wed Feb 6 19:47:18 2013 +0100 Some work on exporting simulation results to CSV (#32). commit ab1eab03599efaa8efed7e103ed09c96ace6ee7d Author: Alan Garny Date: Wed Feb 6 19:24:37 2013 +0100 Some work on exporting simulation results to CSV (#32). commit 4b4027f9f288eaccd77462e387f425b8f6fd4e00 Author: Alan Garny Date: Wed Feb 6 19:20:54 2013 +0100 Some refactoring. commit de932f0c1017203211ede50231a4a6a073968615 Author: Alan Garny Date: Wed Feb 6 17:29:15 2013 +0100 Some work on exporting simulation results to CSV (#32) commit 7e23ed3dc2ce73ff4004362b39c08f3b51935ae9 Author: Alan Garny Date: Wed Feb 6 15:28:42 2013 +0100 Fixed an issue with our SingleCellSimulation plugin which could crash OpenCOR. commit e149f1ee7e7320af25bd91287f8edb1d70dcc80c Author: Alan Garny Date: Wed Feb 6 11:39:18 2013 +0100 Upgraded jQuery from version 1.9.0 to version 1.9.1. commit 437fda3e6be7c8c88a425afd5285d3274b79b4b3 Author: Alan Garny Date: Tue Feb 5 19:29:28 2013 +0100 New snapshots. commit 63c61a581f33dee053058653ce6437a9e2478378 Author: Alan Garny Date: Tue Feb 5 19:18:27 2013 +0100 Forgot to change the patch version of Qt which we use. commit ee83b425cb467ebcaf3739cba4929ed704deba9a Author: Alan Garny Date: Tue Feb 5 19:03:11 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 913b6cdcb3cbd365dc92cbaedf461c4e87a86b39 Author: Alan Garny Date: Tue Feb 5 18:48:03 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit da79408570e275e82ce724a2b8fd947f2ee52823 Author: Alan Garny Date: Tue Feb 5 18:20:51 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 033619f1c006cacafc04f571fd17ee8f938b8bb4 Author: Alan Garny Date: Tue Feb 5 18:01:02 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 7d4d82670603846c0d616b633d3a47715a44a4c2 Author: Alan Garny Date: Tue Feb 5 17:07:19 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit b7fdf3459aee1c5b23fa5be0f3a948027040b671 Author: Alan Garny Date: Tue Feb 5 17:01:29 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit e2d52d056c96ddfaac44ca8535f79695502436b5 Author: Alan Garny Date: Tue Feb 5 16:12:35 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 4ebbc209b6cc86c05a60a867c2a70505db99d535 Author: Alan Garny Date: Tue Feb 5 16:12:31 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 5a095612d2f3773a0aae3343fa5e2d425fbd3dc4 Author: Alan Garny Date: Tue Feb 5 15:45:54 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit f3962ebd3f7520beb6c65967a9f031e7bfe22db6 Author: Alan Garny Date: Tue Feb 5 15:39:22 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit b760883e140cc92c57d6eac9edcf78b54b86b22e Author: Alan Garny Date: Tue Feb 5 15:36:10 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit f6bb35283604d0deaa1c88bc458d770ada7efcbb Author: Alan Garny Date: Tue Feb 5 15:18:20 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 97b19709cdfcb6a62bff678bd48c920760b7d959 Author: Alan Garny Date: Tue Feb 5 14:30:15 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 4f72ff8a3223a3cc2d88861fb6f08245dc3c4ca4 Author: Alan Garny Date: Tue Feb 5 13:54:21 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit e78df044652b71695518abeb3999a41253e897ad Author: Alan Garny Date: Mon Feb 4 21:41:16 2013 +0100 Removed the focus from our delay wheel in our SingleCellSimulationView plugin. commit b3d6af8639eaf3efed5479989fc9f19cb512d5cd Author: Alan Garny Date: Mon Feb 4 19:27:54 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit d3e90dab102d676215cac6fb315baf870b9a23fe Author: Alan Garny Date: Mon Feb 4 18:46:23 2013 +0100 Some minor cleaning up. commit 8c8c93ebdec30847b681e992475e91d7292b683c Author: Alan Garny Date: Mon Feb 4 18:44:46 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 58d57492a01205dbbcb15d2edb8e620916b95875 Author: Alan Garny Date: Mon Feb 4 18:36:34 2013 +0100 Some minor cleaning up. commit aeb56fdca661ec181ab7ed54c2b431947abe908b Author: Alan Garny Date: Mon Feb 4 18:24:53 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit b79ba3efe4e61e42d54f8e40e21078fc37c896a0 Author: Alan Garny Date: Mon Feb 4 17:54:24 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit e8781f80a35eb3208f9571356072a71c887ad2d1 Author: Alan Garny Date: Mon Feb 4 17:46:51 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit b1777208c442e44a832a0d4cbb57faf141689038 Author: Alan Garny Date: Mon Feb 4 17:35:21 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). Also some minor refactoring. commit 29899b6e6e5df2edd648474f42a8a06d7eca876f Author: Alan Garny Date: Mon Feb 4 16:57:32 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). Also some minor cleaning up. commit c69f4ed37559f68f44ad36ae7194f155554d12f6 Author: Alan Garny Date: Mon Feb 4 15:17:26 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 2114bacecf74c22a7b9022d8100959b7734fdee4 Author: Alan Garny Date: Mon Feb 4 14:12:11 2013 +0100 Retrieve the solvers'\'' properties (#112). Also some minor refactoring and cleaning up. commit a6d75690bcc85d81ddc31de5be680a7e37d93a87 Author: Alan Garny Date: Mon Feb 4 13:01:33 2013 +0100 Some minor cleaning up. commit 2de03657e7a74ef8288f4c259fd67b83f9e71159 Author: Alan Garny Date: Mon Feb 4 13:01:08 2013 +0100 Some minor cleaning up. commit d16cd70754e3641bf71a31e52cd602cd2bb5d175 Author: Alan Garny Date: Mon Feb 4 11:27:29 2013 +0100 Retrieve the solvers'\'' name (#112). Also some minor refactoring and cleaning up. commit 550d08f3d20b05f5547a3e2848f400a7bfbd09d7 Author: Alan Garny Date: Mon Feb 4 10:43:37 2013 +0100 Some work on our SingleCellSimulationView plugin (#112). commit 356416a98f480bcb1d6fd94820709a30ba13bb00 Author: Alan Garny Date: Mon Feb 4 10:34:33 2013 +0100 Temporarily removed the Traces frame (#112). commit 9e857dd3ef11a6da80c483030124f927f3694f8b Author: Alan Garny Date: Mon Feb 4 10:11:09 2013 +0100 Make the model parameters checkable (to be able to plot them; #112). commit df439c538359909c0036dc273f8370ebbebc6539 Author: Alan Garny Date: Sat Feb 2 18:07:38 2013 +0100 Done with allowing categories to be selected in the plugins window (closes #145). commit 6dadf05f065e59060e4edada32716b751c818228 Author: Alan Garny Date: Sat Feb 2 12:27:40 2013 +0100 Done with allowing categories (i.e. Units, Components, etc.) to be selected in the CellMLAnnotationView plugin (closes #144). commit 09a36f07a14f9be145663a764955ff9f221c1202 Author: Alan Garny Date: Sat Feb 2 10:00:32 2013 +0100 Minor update to our developer documentation. commit 33a04527f329feee61885b9acd3c722fec806258 Author: Alan Garny Date: Fri Feb 1 19:29:35 2013 +0100 Improved PropertyEditorWidget so that even sections can now be selected (making it easier to collapse/expand a section). commit 70de7937bed905febf2345a2a038be360d881598 Author: Alan Garny Date: Fri Feb 1 19:21:24 2013 +0100 Some minor cleaning up of PropertyEditorWidget. commit 9db613652179ffdaf6d9a75e48bc77cf96e2f562 Author: Alan Garny Date: Fri Feb 1 19:11:42 2013 +0100 Some minor cleaning up (#112). commit ce5080ac23c6e79b8163191dfa6cf35225107f2f Author: Alan Garny Date: Fri Feb 1 15:57:18 2013 +0100 Fixed a small issue which crashed OpenCOR because of a property editor not closing. commit 9765000f474f0f4fa750301639c748ae9fab9f52 Author: Alan Garny Date: Fri Feb 1 15:56:25 2013 +0100 Added a comment about a limitation in the CellML API. commit 1f089acd967fdd0b18a527a6ce1fe53860747e4f Author: Alan Garny Date: Fri Feb 1 14:58:19 2013 +0100 Distinguish between '\''proper'\'' constants and '\''computed'\'' constants (#112). Also some minor cleaning up. This is very important in case the user modifies a model parameter which requires recomputing constants. The CellML API doesn'\''t distinguish between '\''proper'\'' and '\''computed'\'' constants which means that we couldn'\''t recompute '\''computed'\'' constants without resetting all the '\''proper'\'' constants too (something we don'\''t want to do since we want to allow the user to modify those!). Ideally, the CellML API would distinguish the two of them, but no time to wait for it so we do it ourselves. commit 9a66c840570a328927a751e2d7fe8556af40a5bd Author: Alan Garny Date: Fri Feb 1 11:28:07 2013 +0100 Keep track of user changes to parameter values (#112). Also some minor cleaning up. commit 66d7fcbd93ebbe314666007c522a397a39820fef Author: Alan Garny Date: Fri Feb 1 11:10:29 2013 +0100 Some refactoring (#112). commit 777b62446c4d5a9fdf9a97b45a46921a97ce97a4 Author: Alan Garny Date: Fri Feb 1 10:14:46 2013 +0100 Some work towards keeping track of solvers, traces and parameters property values (#112). commit 9e2278f531fd1cb0d59efcc82cf60e920965c6f5 Author: Alan Garny Date: Thu Jan 31 20:24:38 2013 +0100 Some work towards addressing the crash on OS X when trying to save a file under a new name (#110). commit 7c16ed676c847202cf5a782db3031192301004c4 Author: Alan Garny Date: Thu Jan 31 17:42:18 2013 +0100 Qt 5.0.1 and Qt Creator 2.6.2 have just been released, so updated our developer documentation. commit 2ba3cadede0fb67a2d230d56f97017c301a36ac4 Author: Alan Garny Date: Thu Jan 31 16:47:24 2013 +0100 Now keep track of simulation property values (#112). Also some refactoring. commit 54ce37366ba97122bcbbf603cf4ec5a81693ca4c Author: Alan Garny Date: Thu Jan 31 09:45:36 2013 +0100 Minor updates to OpenCOR'\''s website. commit 0c3c30f0c5441435edd12e4182accdb9735196d2 Author: Alan Garny Date: Wed Jan 30 22:26:34 2013 +0100 Some minor improvement to our user documentation. commit 8e206f451b9fc5016fcbcfa534fd711a735e5465 Author: Alan Garny Date: Wed Jan 30 19:30:14 2013 +0100 Some minor improvement to our user documentation. commit 888d3f72c0b5d4519debc8726af8d349b2ee4eb7 Author: Alan Garny Date: Wed Jan 30 18:43:30 2013 +0100 Some minor cleaning up. commit 7ac58b2259cce5a6445d2d2f1edacf236fedfd19 Author: Alan Garny Date: Wed Jan 30 17:09:22 2013 +0100 Found the reason of the conflict between the system and OpenCOR versions of LLVM (closes #136). There is no solution as such since it'\''s an issue with VirtualBox and its lack of proper 3D acceleration handling, but at least there is a workaround for the user to get OpenCOR to work as expected, hence updated the user documentation. commit a9e31de5787c973086413c5da589984ef5cf5a14 Author: Alan Garny Date: Wed Jan 30 11:51:29 2013 +0100 Minor update to the developer documentation. commit b60f4baa0d5c4c22a8608bbcea163c97411241c2 Author: Alan Garny Date: Tue Jan 29 19:00:27 2013 +0100 New snapshots. commit 20ec9e204da112da62482fb5fda74e41a5afa6d4 Author: Alan Garny Date: Tue Jan 29 18:56:24 2013 +0100 Fixed a building issue on OS X. commit b9d86a670e0d12a38c8ba7ace85c49cf1605ae15 Author: Alan Garny Date: Tue Jan 29 18:39:59 2013 +0100 Fixed a building issue on Windows and Linux. commit e84c6cf193adfb60e1793e2cb7ea830acd39684c Author: Alan Garny Date: Tue Jan 29 18:18:30 2013 +0100 Addressed a small issue with debug information always being generated. Also fixed an issue with QtTest/QtTest generating some warnings. commit dcb8efbbb6dc989f6b96b3ddb0d82086e2bb245d Author: Alan Garny Date: Tue Jan 29 17:36:03 2013 +0100 Some minor cleaning up (as a result of Xcode 4.6 being better than Xcode 4.5). commit fa08535b6bd87059598e539776cf39aa2a0dbb69 Author: Alan Garny Date: Tue Jan 29 17:07:54 2013 +0100 Done with retrieving all the model parameters (closes #142). commit a9946dbca3f40fd0f8e8b9252176ab5a13f1be7d Author: Alan Garny Date: Tue Jan 29 14:51:07 2013 +0100 Some minor cleaning up (#142). commit 1cd68ff61879e3c7affeb61167f694f3911ff4ed Author: Alan Garny Date: Tue Jan 29 14:38:39 2013 +0100 Done with addressing the the reopening a CellML file (closes #143). commit 4db73a99e3236f6171c4a85565f0499d898c843e Author: Alan Garny Date: Tue Jan 29 13:04:32 2013 +0100 Slight update to the developer documentation. commit 809aecf80c8c3cd3840633e65b0f0ad34240eb57 Author: Alan Garny Date: Tue Jan 29 11:44:13 2013 +0100 Some work on addressing the the reopening a CellML file (#143). commit a5c05194797ed14787ca6e878d892e0c7b727363 Author: Alan Garny Date: Tue Jan 29 10:41:02 2013 +0100 Some minor refactoring (#143). commit 82205671915d3a27d6292bec283d14e8a397802e Author: Alan Garny Date: Mon Jan 28 19:33:53 2013 +0100 New snapshots. commit b11635ae1c6471d23771eab6dc377436ac82752d Author: Alan Garny Date: Mon Jan 28 19:06:10 2013 +0100 Some work on retrieving all the model parameters (#142). commit 9e84254bd6766c3aa16a38126188cbdd8bf5cb84 Author: Alan Garny Date: Mon Jan 28 18:10:23 2013 +0100 Some work on retrieving all the model parameters (#142). commit b7e8e60db514ae1b7706d9bc452114f13bb11004 Author: Alan Garny Date: Mon Jan 28 17:38:07 2013 +0100 Some work on retrieving all the model parameters (#142). commit a84f873d65a9c645c2eb33b694f5cf24fb3a27a9 Author: Alan Garny Date: Mon Jan 28 17:28:55 2013 +0100 Some work on retrieving all the model parameters (#142). commit 1db74fee54b325c17e3931e2bdf5a603aab45b3a Author: Alan Garny Date: Mon Jan 28 14:57:34 2013 +0100 Some work on retrieving all the model parameters (#142). commit afefe2d2cc60b699aac53e69f4da48d95ee30f9f Author: Alan Garny Date: Mon Jan 28 14:34:56 2013 +0100 Some work on retrieving all the model parameters (#142). commit aad8af999f3a52bccc09a3e5231b67e9cd50f4d7 Author: Alan Garny Date: Sat Jan 26 13:18:40 2013 +0100 Upgraded Qwt from version 6.1.0 RC2 to version 6.1.0 RC3. commit aef81e33ef9698c21a4f5a87f4889f5674cdd773 Author: Alan Garny Date: Sat Jan 26 12:36:15 2013 +0100 Some refactoring which makes the use of runtime model parameters more generic (#142). commit ae2c1372c26b26e731624d97735b63b18da9409e Author: Alan Garny Date: Sat Jan 26 01:18:15 2013 +0100 Some work on retrieving all the model parameters (#142). commit 2de85806fdc05a579dbb68f241a3effeb184c720 Author: Alan Garny Date: Sat Jan 26 00:44:48 2013 +0100 Some work on retrieving all the model parameters (#142). commit a69459ebc05a03ce474124d7893e7bdd88e603c1 Author: Alan Garny Date: Fri Jan 25 18:38:07 2013 +0100 Some work on retrieving all the model parameters (#142). commit 9b144a3ac128390d0fe96e5f4f3a67a4290790f5 Author: Alan Garny Date: Fri Jan 25 17:46:42 2013 +0100 Now emit an error if a solver cannot retrieve a property value for its initialisation (closes #121). commit da29765703c88b5ad8affd9367a68aad1e17b3a9 Author: Alan Garny Date: Fri Jan 25 16:51:25 2013 +0100 Some work on retrieving all the model parameters (#112). commit e62f0380ed0d9eb66c2ca13d1815fb1914061062 Author: Alan Garny Date: Fri Jan 25 16:44:55 2013 +0100 Allow the switching of modes even when a file has been modified (only the editing views now remain disabled). commit 779954afead58ce14231a560d3ff90ebf7b69c9a Author: Alan Garny Date: Fri Jan 25 16:30:21 2013 +0100 Some cleaning up (#142). commit b1c720136a1b17dae687d6ff9ae839eceb896862 Author: Alan Garny Date: Fri Jan 25 14:43:52 2013 +0100 Some minor cleaning up. commit 25663428053c561df332d58e75f9aa23e020938d Author: Alan Garny Date: Fri Jan 25 14:05:01 2013 +0100 Some minor cleaning up. commit 22e685cee2962dea1254bc340dc36818a2d2728e Author: Alan Garny Date: Fri Jan 25 11:55:29 2013 +0100 Tried to be too '\''smart'\'' with our tree item delegates... commit 5b60f80ddfc1eb93024ada95ed5980879b289d85 Author: Alan Garny Date: Fri Jan 25 11:48:52 2013 +0100 Some work on retrieving all the model parameters (#142). Also some minor cleaning up. commit b36299d7f7277a81b6e44a6c9c5ae2b45954c635 Author: Alan Garny Date: Fri Jan 25 10:57:37 2013 +0100 Some work on retrieving all the model parameters (#142). commit fe1390cacace7e66a63daf3da31c644a206a82f3 Author: Alan Garny Date: Thu Jan 24 19:16:34 2013 +0100 Some minor cleaning up of our CellMLAnnotationView plugin. commit b7b1ba6e513b2bde2ed12eb58d375368a0880c86 Author: Alan Garny Date: Thu Jan 24 19:07:47 2013 +0100 Imrpoved PropertyEditorWidget (#142). commit 99dbaddf943aa4de2011e787d15ce162ba96c065 Author: Alan Garny Date: Thu Jan 24 18:28:12 2013 +0100 Some minor cleaning up. commit cb10b80b79fda76c0f66105209797df927aca3dd Author: Alan Garny Date: Thu Jan 24 17:40:05 2013 +0100 Some work on retrieving all the model parameters (#142). commit 4fe56aa3cdf3302baedd0f0fb96817975f90067b Author: Alan Garny Date: Thu Jan 24 16:29:45 2013 +0100 Some work on retrieving all the model parameters (#142). commit d9b32382046a34abe4b9161c430f6a2b0e409a93 Author: Alan Garny Date: Thu Jan 24 16:20:26 2013 +0100 Some work on retrieving all the model parameters (#142). commit 4262bd64dd2baa4209d7152936f315046b9e8242 Author: Alan Garny Date: Thu Jan 24 14:40:14 2013 +0100 Some work on retrieving all the model parameters (#142). commit 0234555174c5ebe2a5ddd8d3efd119668aa379d5 Author: Alan Garny Date: Thu Jan 24 13:54:09 2013 +0100 Some work on retrieving all the model parameters (#142). commit 2b22aab124339c95eeaa30ce7965c4a910ddf5fd Author: Alan Garny Date: Thu Jan 24 13:24:51 2013 +0100 Some work on retrieving all the model parameters (#142). commit e1429f2d0d696fd2a55fda3cab7d36ae1f7760d5 Author: Alan Garny Date: Thu Jan 24 11:05:34 2013 +0100 Let people know why they can'\''t switch modes/views. commit 07e39533d83a196597785444a32d8e5140824863 Author: Alan Garny Date: Thu Jan 24 11:03:07 2013 +0100 Let people know why they can'\''t switch modes/views. commit 34e3909610cbbf380f6ae3c16265a7aa42ca9be9 Author: Alan Garny Date: Thu Jan 24 10:35:53 2013 +0100 Reverted a small change which broke things in our CellMLAnnotationView plugin. commit eda13c5a323bea205dfc1636b9b504814e688afd Author: Alan Garny Date: Thu Jan 24 10:03:48 2013 +0100 Some (minor) work on retrieving all the model parameters (#142). commit 3a97cb3f5b6b2d5f839a41605943042455512de6 Author: Alan Garny Date: Wed Jan 23 18:35:33 2013 +0100 Some more (minor) work on retrieving all the model parameters (#142). commit 4542bd9505f604640e5fc043422c2f40dfb5514e Author: Alan Garny Date: Wed Jan 23 18:27:33 2013 +0100 Done with replacing QRegExp with the better QRegularExpression (#137). commit 802227ad44161f55a5b3363bdbdcd14bbbbd86f3 Author: Alan Garny Date: Wed Jan 23 18:19:37 2013 +0100 Slightly improved our CellMLAnnotationView plugin. commit 973432b21166de50982d902951f4b1523a6a3d16 Author: Alan Garny Date: Wed Jan 23 17:43:36 2013 +0100 Started replacing QRegExp with QRegularExpression (#137). commit b8050eb000aef655da0be716115b3adfcedee2d3 Author: Alan Garny Date: Wed Jan 23 17:32:19 2013 +0100 Started working on retrieving all the model parameters (#142). commit 2e66391bf7f4111f990a9ffd490e27495eb0f9a2 Author: Alan Garny Date: Wed Jan 23 13:24:33 2013 +0100 Allow CollapsibleWidget to be collapsed/expanded by simply double clicking its header'\''s title commit 40e176e59ec6d98aa2b07a09dbc23abf184ccb85 Author: Alan Garny Date: Wed Jan 23 13:23:08 2013 +0100 Some minor cleaning up. commit 1a07ab7f783db6fccc233b5d32131e1f698638e4 Author: Alan Garny Date: Wed Jan 23 12:02:23 2013 +0100 Fixed a few CellML-related issues in our SingleCellSimulation plugin (#112). commit 3fd24b3af587736190ba7832af3fafba999247e3 Author: Alan Garny Date: Wed Jan 23 11:18:44 2013 +0100 Keep track / retrieve the width of our property editors'\'' columns in the Parameters section (#112). commit 30fa06b4aab44ceee179a4c1e75c72caddbcde14 Author: Alan Garny Date: Wed Jan 23 10:34:53 2013 +0100 Some work on our SingleCellSimulation plugin (#112). commit 7332e613b91392ad4d5e25090cd670240e6f456c Author: Alan Garny Date: Wed Jan 23 10:23:43 2013 +0100 SingleCellSimulation plugin: some work on our Parameters property editor. Also changed the proxy focus for our simulation view (it used to be the Simulation property editor, but since it can be collapsed we now use the graph panels widget instead) and did some minor cleaning up. commit 3d053c5caea9b84e05935ede8ce8fb436633455c Author: Alan Garny Date: Tue Jan 22 16:28:13 2013 +0100 Addressed a few Qwt-related warnings on Windows. commit a7bf07028400917958b3177d06ed1352e39d068b Author: Alan Garny Date: Tue Jan 22 15:00:38 2013 +0100 Upgraded Qwt from version 6.0.2 to version 6.1.0 RC2. Also '\''upgraded'\'' our Oxygen icons from version 4.9.97 to version 4.9.98. commit 305dd0b10fc08efa5618d2cda8c28acec0b65299 Author: Alan Garny Date: Tue Jan 22 13:41:23 2013 +0100 Slight updates to the developer documentation. commit bd5d7807e33e7b238266ce0cce2adc4a50f40e71 Author: Alan Garny Date: Tue Jan 22 13:16:09 2013 +0100 Minor editing of a comment. commit 51e0e3977636c51eead86ab7e11947d231b853d9 Author: Alan Garny Date: Mon Jan 21 19:57:43 2013 +0100 New snapshots. commit 654364411b8b2fbb269f1f877774820dccad26a1 Author: Alan Garny Date: Mon Jan 21 18:05:30 2013 +0100 Improved our handling of a double click in TreeViewWidget. commit d57829a23b3e13ac22d0349890d840c202344ec8 Author: Alan Garny Date: Mon Jan 21 17:39:29 2013 +0100 Fixed the CSS import issue (it was just the syntax that changed between Qt 4 and Qt 5! Closes #127). Also some minor cleaning up. commit e4e9f0169794824f981ed30ded0a3916cb842e04 Author: Alan Garny Date: Sun Jan 20 18:01:35 2013 +0100 Fixed our TreeView widget which caused our FileBrowser plugin (as well as our FileOrganiser plugin in fact) not to respond to the double clicking of a file (closes #135). commit b58c60357ce49c8415c5bbdf344835704eee73ab Author: Alan Garny Date: Fri Jan 18 17:19:18 2013 +0100 Some minor cleaning up. commit 73f17353d7ff3363388014b845674206070d1e8c Author: Alan Garny Date: Fri Jan 18 15:30:02 2013 +0100 Minor update to the developer documentation. commit 55fd4b1140387ca80b0de4a94993c82341a46ee9 Author: Alan Garny Date: Fri Jan 18 13:48:18 2013 +0100 Some minor Linux-related fixes to some of our CMake files. commit 29fe670f73c2d889a8d66a7532cf084b4843e34d Author: Alan Garny Date: Fri Jan 18 13:13:06 2013 +0100 Some minor Windows-related fixes to some of our CMake files. commit 90e36c2bce73d780780f2a6046aa8d92c17f1e03 Author: Alan Garny Date: Fri Jan 18 11:20:45 2013 +0100 Stopped using macdeployqt on OS X and, instead, deploy everything ourselves (closes #124). Also some cleaning up of our CMake files. commit ea09b330db59cdb1a9731f0dae5398aa105d62fe Author: Alan Garny Date: Wed Jan 16 14:32:49 2013 +0100 Upgraded jQuery from version 1.8.3 to version 1.9.0, and the Oxygen icon theme from version 4.9.2 to version 4.9.97. commit 0aa5caad38ca4216e7061a2dabf0f72ba74629a2 Author: Alan Garny Date: Wed Jan 16 11:50:25 2013 +0100 Got rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit system. commit e4533abb791dc6085a8a1c8fe8d8d43baa91686b Author: Alan Garny Date: Wed Jan 16 11:49:37 2013 +0100 Revert "Revert "Minor CSS fix for our user documentation (for Internet Explorer 10)."" This reverts commit e67a849b61fec3ec653a406dc1ebe9eafabe973c. commit a9d1a9683b9187759f8151c12cb821976fd6c198 Author: Alan Garny Date: Wed Jan 16 11:49:37 2013 +0100 Revert "Revert "Minor editing of a comment."" This reverts commit fb5ca80b5416ab767b9d09431e6b6c53e6f54c62. commit 21b98c99d8bb38b9cbf183e09670d67970711a48 Author: Alan Garny Date: Wed Jan 16 11:49:37 2013 +0100 Revert "Revert "Can now deploy OpenCOR on Windows (in addition to Linux and OS X; #120)."" This reverts commit 313d26c3ad9944669c7c0138a508b2c8a871638a. commit 6cec440ecc39b01666fd44d83299925ade251bf7 Author: Alan Garny Date: Wed Jan 16 11:49:37 2013 +0100 Revert "Revert "Some work on addressing the issue of importing a CSS file into another (#127). Also some minor cleaning up and a minor fix."" This reverts commit 7f51611da0beddee62db1bf0b43d4f59df47f568. commit dd61faacbb5dfd59bfc573eadff1aa7a2d1adcc3 Author: Alan Garny Date: Wed Jan 16 11:49:37 2013 +0100 Revert "Got rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit system." This reverts commit 62788e869a191b5338850fcaf5f28ad88730d649. commit 835524d7b3a1f0f746bc823e9efc3f918c7c9ba8 Author: Alan Garny Date: Wed Jan 16 11:43:21 2013 +0100 Got rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit system. commit 9e5c6e815018fbbaa08ccf4b8ad535305dd86b85 Author: Alan Garny Date: Wed Jan 16 10:47:01 2013 +0100 Revert "Some work on addressing the issue of importing a CSS file into another (#127). Also some minor cleaning up and a minor fix." This reverts commit 2ebcba48c907e734d41e3a4426d358988b91f4bd. commit 676787b2eef347e5e1fdd6c810f5b44751e6bed2 Author: Alan Garny Date: Wed Jan 16 10:47:01 2013 +0100 Revert "Can now deploy OpenCOR on Windows (in addition to Linux and OS X; #120)." This reverts commit a7bad65a8ca8965cfa03e62c13a102a6932c3611. commit 6994326524a2e69ea1c3948c9dd98c5562447ddd Author: Alan Garny Date: Wed Jan 16 10:47:01 2013 +0100 Revert "Minor editing of a comment." This reverts commit 0723ec9ca8a7ade0c3c1d126c6f118d2c1f59364. commit 19d6f7333828622bf92567b2a056b101631e2d81 Author: Alan Garny Date: Wed Jan 16 10:47:01 2013 +0100 Revert "Minor CSS fix for our user documentation (for Internet Explorer 10)." This reverts commit d929590ef376703e4c0fddf25fae74ba20bd580d. commit a286f57a0c07a1f7a6ac8702a1d066f9bf67efb4 Author: Alan Garny Date: Wed Jan 16 09:51:33 2013 +0100 Minor CSS fix for our user documentation (for Internet Explorer 10). commit 0900cf45d926b8308003e54cba210434a936f06d Author: Alan Garny Date: Tue Jan 15 17:03:39 2013 +0100 Minor editing of a comment. commit c6e11999e0e56a008249abb9916e8b8ec5a7003d Author: Alan Garny Date: Tue Jan 15 16:19:28 2013 +0100 Can now deploy OpenCOR on Windows (in addition to Linux and OS X; #120). commit cbde9e6be2ffba9b33df28bf5ffd7f5a74e32741 Author: Alan Garny Date: Tue Jan 15 15:10:05 2013 +0100 Some work on addressing the issue of importing a CSS file into another (#127). Also some minor cleaning up and a minor fix. We don'\''t rely on the CSS importing feature anymore. Instead, we directly include all the CSS files in a HTML file. However, this has resulted in another unrelated issue which is that, since the import statement was different for the online and offline help, we now have to programmatically change the CSS style of span.opencor. Though this should be very simple (see line 215 of helpwidget.cpp), it doesn'\''t work! At least, not when we want to change the display propery of span.opencor. If we had wanted to change its colour, then it would have been fine (!!). So, though now the help is all styled and everything, we can'\''t currently show the code which would allow the help to command OpenCOR (through OpenCOR'\''s URL scheme). commit c7ab3c6ae6c579dc9e0aa16dcdca0b8486b27e65 Merge: 1561d2e7e 0d3becd11 Author: Alan Garny Date: Mon Jan 14 19:13:03 2013 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 1561d2e7ee5640502158bde9bca23b940484d333 Author: Alan Garny Date: Mon Jan 14 19:11:00 2013 +0100 Minor update to the developer documentation. commit 0d3becd1109081e69dd4a0b9ce2d6a9ea439077c Author: Alan Garny Date: Mon Jan 14 17:11:22 2013 +0100 Minor editing of a comment. commit 2d4f1af1db4315dce0c266278701bc22083a818c Author: Alan Garny Date: Mon Jan 14 17:09:48 2013 +0100 Minor editing of a comment. commit 1233a3a5b833d8147f0a1ca73a3f2a391bbc7448 Author: Alan Garny Date: Mon Jan 14 16:38:31 2013 +0100 Some minor editing of a comment. commit 53b9bc3e62d9249ef1ddc4b423233ec6439b9198 Author: Alan Garny Date: Mon Jan 14 15:39:27 2013 +0100 Some minor comments. commit 488046be9131d4178082dcf2632dc4425fd4f2a0 Author: Alan Garny Date: Sat Jan 12 01:14:29 2013 +0100 Fixed a couple of memory leaks. commit 6d3e34df3df9d6c83c1601f62590a9069e582efa Author: Alan Garny Date: Sat Jan 12 01:09:21 2013 +0100 Fixed a couple of memory leaks. commit c7bff03bf39bb71fffbe433b4f3eb9289841b12f Author: Alan Garny Date: Fri Jan 11 23:55:25 2013 +0100 Updated the developer documentation. commit f9a2932f0431bc679408d69bb33f201af06f9b53 Merge: 8f1fc3ac6 7b430d8c1 Author: Alan Garny Date: Fri Jan 11 20:33:35 2013 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor Conflicts: CMakeLists.txt commit 8f1fc3ac681c23cf8c42e36c48cf68d99a595b33 Author: Alan Garny Date: Fri Jan 11 19:43:14 2013 +0100 Some work on the Windows deployment. commit 7b430d8c1a881c77f5993998266996f0fadc9939 Author: Alan Garny Date: Fri Jan 11 19:43:14 2013 +0100 Some work on the Windows deployment. (Possibly) improved Linux deployment. commit 049111eb8b3bdcbc47448b205d5b36e716ba02d3 Author: Alan Garny Date: Fri Jan 11 18:23:15 2013 +0100 Can now deploy OpenCOR on Linux (#120). commit 4576a2a604ca207973ee13bc33e8928981e1e3bf Author: Alan Garny Date: Fri Jan 11 17:33:11 2013 +0100 Some work on deploying the Linux version of OpenCOR (#120). commit 1d06f2f54cd5ab95549441a2a426ac925f00f2a6 Author: Alan Garny Date: Fri Jan 11 16:50:43 2013 +0100 Some minor cleaning up. commit f1a978183a3b607ea7b8c94907263cfabc64c93c Author: Alan Garny Date: Fri Jan 11 15:36:20 2013 +0100 Qt 5: got rid of the Linux qt.conf since it now breaks things for us (and we don'\''t actually need it -- the default path for the plugins directory is what we use anyway). commit 92f6517721d67013fe70485c5c13b3b074f74d15 Author: Alan Garny Date: Fri Jan 11 14:49:46 2013 +0100 Some minor cleaning up. commit 887460230e15967e2a19c22cb53ea4659bc4fadd Author: Alan Garny Date: Fri Jan 11 14:13:42 2013 +0100 Some minor cleaning up. commit dde1bb69b685eef9090f14bb781fea41da242721 Author: Alan Garny Date: Fri Jan 11 13:10:26 2013 +0100 Some minor cleaning up. commit bf068649087aeb324614c5eec872b9346a5bcb23 Author: Alan Garny Date: Thu Jan 10 10:01:21 2013 +0100 Slightly improved our matching of metadata ids. commit ef8102ba61b9d86df2c0b41abd6f393e19170f27 Author: Alan Garny Date: Wed Jan 9 21:23:51 2013 +0100 Minor editing. commit 12f28bcad6f7ddcb4e86afa4df4937ed96c18550 Author: Alan Garny Date: Wed Jan 9 19:29:36 2013 +0100 Added a comment. commit 5c0cf6d04da73cc0e0367202c469045801782ce4 Author: Alan Garny Date: Wed Jan 9 18:41:49 2013 +0100 Fixed the full screen mode issue on OS X (closes #125). commit 928cc6ac6ae40c99faa109eb54ff7354fedf80ca Author: Alan Garny Date: Wed Jan 9 18:25:03 2013 +0100 Minor comment. commit cd9ae645942063349061a2672185fbcce9092cd4 Author: Alan Garny Date: Wed Jan 9 17:48:05 2013 +0100 Improved our full screen mode. Also some minor cleaning up. commit b3b43b6edea353d0d1ee583049c2c95b7d9685bc Author: Alan Garny Date: Wed Jan 9 15:18:58 2013 +0100 Some minor cleaning up with regards to some shortcuts. commit 70f3a9b431030f1f7cf0b5d0609b452d671fa74f Author: Alan Garny Date: Wed Jan 9 14:22:25 2013 +0100 Qt 5: some minor cleaning up. commit 34615bce61969012c999b47927ffecb1d457c171 Author: Alan Garny Date: Wed Jan 9 13:58:28 2013 +0100 Some minor cleaning up. commit 44fffef51013b90b6a426a6759c1c94c644906e8 Author: Alan Garny Date: Wed Jan 9 13:57:29 2013 +0100 Removed our RICORDOSupport plugin since it doesn'\''t currently do anything. commit 4fa7b2929c215c8e4c48d79284cfbfc9079598fc Author: Alan Garny Date: Wed Jan 9 13:13:41 2013 +0100 Some minor cleaning up. commit e3e9b2536f156e0706b1efe245adc42c3be82937 Author: Alan Garny Date: Wed Jan 9 12:57:01 2013 +0100 Fixed the Qt 5 related issue with TreeViewWidget (closes #124). commit 9b85f0ede99c93ae6785e445f175d9a63de890d5 Author: Alan Garny Date: Wed Jan 9 10:52:45 2013 +0100 Replaced QJson with Qt 5'\''s JSON support (closes #123). commit ff412faee440db8cee6de37ca57eb029fe72ad87 Author: Alan Garny Date: Wed Jan 9 10:33:45 2013 +0100 Some cleaning up (this allows OpenCOR tests to run on Windows again following our move to Qt 5). commit 662ad362f8f307d0d1604a40c36190f752088511 Author: Alan Garny Date: Tue Jan 8 17:39:37 2013 +0100 Some minor cleaning up. commit 199c158c89334281e2776ec5ae7f4ebe2283ba58 Author: Alan Garny Date: Tue Jan 8 17:15:28 2013 +0100 A lot of work on porting OpenCOR to Qt 5 (#120). We can now build on all three platforms, but not yet deploy. Note that there appear to be a few issues with Qt 5 which will need to be looked into. Otherwise, quite a bit of cleaning up too. commit 9055cae430833544b60f11c290f549651181b1cd Author: Alan Garny Date: Wed Jan 2 23:25:50 2013 +0100 Use llvm::outs() (rather than llvm::errs()) for debugging outputs since that stream is used by Qt Creator to retrieve compilation issues, and some of our Compiler plugin'\''s tests generate some '\''valid'\'' compilation errors, so... commit 6aaadfbfeb897a4b03cdd8146e877595bf5ba029 Author: Alan Garny Date: Wed Jan 2 10:29:36 2013 +0100 Upgraded from version 6.0.1 to 6.0.2 of Qwt. commit 31eae6f0ce056418774f6439cd53632dbc0cf00f Author: Alan Garny Date: Tue Jan 1 17:33:34 2013 +0100 Updated QtSingleApplication from Qt Creator 2.6.1. commit 69605980cbeaaaedad0f2bcedab92b4b9a35d7a1 Author: Alan Garny Date: Tue Jan 1 15:18:46 2013 +0100 Minor refactoring of our CMake files. commit a8175ce56db894d8119052a5e0000b6264bfbe6b Author: Alan Garny Date: Sun Dec 30 14:29:05 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 (#122). Some work on making things to build on Windows. Also built the release and debug on Windows. commit 73532c5eb97ed3ad230c6ddb47acab9fd4703188 Author: Alan Garny Date: Fri Dec 28 16:31:58 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 (#122). It seems to be working fine on OS X. commit 0e438d5a2d94f3533124a229f7970fa9c1f78991 Author: Alan Garny Date: Fri Dec 28 14:33:55 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 (#122). It seems to be working fine on OS X. commit 1b9716ab7680a430f2a1b7295cbb2c71599f0a6e Author: Alan Garny Date: Fri Dec 21 01:44:20 2012 +0100 Got our list editor widget for our property editor widget to work as we want on OS X. commit ad469ec603efee848f32d9c9ddec57db5324e59b Author: Alan Garny Date: Thu Dec 20 23:20:24 2012 +0100 Added a comment about our list editor widget for our property editor widget since things don'\''t work as on Windows and Linux. commit e83f1d9d6537d031dcb72ea49c481102f7cfc4c3 Author: Alan Garny Date: Thu Dec 20 22:27:18 2012 +0100 Improved our list editor widget for our property editor widget. commit 37a00587fd600e8330b03ab3573524e93a485697 Author: Alan Garny Date: Thu Dec 20 20:57:39 2012 +0100 Some minor cleaning up. commit cdf7fe8da36b742331ef92cccecd5e07a6347580 Author: Alan Garny Date: Thu Dec 20 14:34:37 2012 +0100 Some minor cleaning up. commit 6cecfb40d29678646b25f35f4ec79c741014d05f Author: Alan Garny Date: Thu Dec 20 11:46:35 2012 +0100 Replaced Q_WS_xxx with Q_OS_xxx in prepraration of our porting to Qt 5 (#120). commit 58892f8c6a2228cdea1072627d571d6741662418 Author: Alan Garny Date: Wed Dec 19 15:51:33 2012 +0100 Fixed a small issue between Internet 9 and the web site. commit 1c89edef878d19548268c086d6c5dadf3b19b179 Author: Alan Garny Date: Wed Dec 19 15:38:45 2012 +0100 Some minor refactoring of '\''struct'\''s to '\''class'\''s. commit caaca54a513622074bf0754d205da26325588b28 Author: Alan Garny Date: Wed Dec 19 14:21:20 2012 +0100 Some minor refactoring of '\''struct'\''s to '\''class'\''s. commit 5a58f289c3c162b96125c7b6c2bb6878de5bbc6b Author: Alan Garny Date: Tue Dec 18 18:04:37 2012 +0100 Fixed a memory leak. commit f2240f0b3c2fe5bffb706f2d28c9febd66a6d3d7 Author: Alan Garny Date: Tue Dec 18 18:00:13 2012 +0100 Some minor cleaning up. commit d122dc86dcb3fc1ec9fcf60d05a98502b3a99400 Author: Alan Garny Date: Tue Dec 18 17:53:16 2012 +0100 Some minor refactoring of '\''struct'\''s to '\''class'\''s. commit 1b0edd1d41e1bf80e0b85106bad7dbab27d0feb6 Author: Alan Garny Date: Tue Dec 18 17:21:02 2012 +0100 Some minor refactoring of '\''struct'\''s to '\''class'\''s. commit a9c92f04ea5aaa3b9343e46f0417b67cf6156edd Author: Alan Garny Date: Tue Dec 18 16:51:44 2012 +0100 Some minor refactoring of '\''struct'\''s to '\''class'\''s. commit 80409dee60ba6f3db27b9c5a1bf94647968f7a71 Author: Alan Garny Date: Tue Dec 18 16:06:08 2012 +0100 Some work on our solvers'\'' properties (#112). We now have a default value. commit ba0fc28d95dac27cd0bcf4396088eab2d045e0fd Author: Alan Garny Date: Tue Dec 18 15:58:29 2012 +0100 Some work on the solver interface for properties to have a default value. commit 82a0a1dee79e6acdd7e1f3dd2584d2f7df4ec8c6 Author: Alan Garny Date: Tue Dec 18 15:57:12 2012 +0100 Some work on the solver interface for properties to have a default value. commit 0c2c818e0d73bf194c6a3227b777e5aa2732c586 Author: Alan Garny Date: Tue Dec 18 15:21:09 2012 +0100 Some work on the simulation and solvers properties (#112). Can now keep track of the properties'\'' values for a given CellML file. commit 1f99a998bf0f4649196d217006a40bbff8158632 Author: Alan Garny Date: Tue Dec 18 15:06:13 2012 +0100 Some work on the simulation and solvers properties (#112). Can now keep track of the properties'\'' values for a given CellML file. commit 1a4cd91942d6f43859889176e47623de2025a842 Author: Alan Garny Date: Tue Dec 18 12:52:12 2012 +0100 Some minor cleaning up. commit 96d684e5a7956802db2a5a66ba6f9b4a56673b42 Author: Alan Garny Date: Tue Dec 18 11:55:13 2012 +0100 Some minor cleaning up. commit 856e2d4ec2e28063d772c0890d94e9a0d52d9563 Author: Alan Garny Date: Tue Dec 18 11:51:18 2012 +0100 Some minor cleaning up. commit 06488d2379b9e331b07ac90a6c3a7b4e6a3a85f8 Author: Alan Garny Date: Tue Dec 18 11:46:10 2012 +0100 Some minor cleaning up. commit 1d7d7c45d1f9b2171b48af4f7ea0c7bb3f2dbeda Author: Alan Garny Date: Mon Dec 17 19:16:50 2012 +0100 New snapshots. commit 56cb7b42f50003c5e3d5c98568d477a8b5a1d24e Author: Alan Garny Date: Mon Dec 17 18:32:07 2012 +0100 Some refactoring of our SingleCellSimulation plugin (#112). commit d90e23e31452b16666cd533eeac2ce18c5e91893 Author: Alan Garny Date: Mon Dec 17 16:59:53 2012 +0100 Some refactoring of our SingleCellSimulation plugin (#112). commit 0a18243c748b957d163f4dbb8f7847ef0de67c05 Author: Alan Garny Date: Mon Dec 17 16:20:40 2012 +0100 Some refactoring of our SingleCellSimulation plugin (#112). commit 7337b6d535e298e0a00da14713a55a12d01bd2c5 Author: Alan Garny Date: Mon Dec 17 15:52:14 2012 +0100 Some refactoring our SingleCellSimulation plugin (#112). commit c377eae720c807463101cddd21ffcae1eb5c3dd1 Author: Alan Garny Date: Mon Dec 17 15:06:44 2012 +0100 Some refactoring our SingleCellSimulation plugin (#112). commit 20f51ba68b21960a05ba81ad816a342643d11bba Author: Alan Garny Date: Mon Dec 17 14:01:57 2012 +0100 Some minor cleaning up. commit e21d636cfbcbba630f1ef64d2670b6a1a5e015d4 Author: Alan Garny Date: Sun Dec 16 13:56:16 2012 +0100 Allow our property editor widget not to show its units column (since units are not relevant for our list of traces). commit 18e12b1b1d724ce5e912b35fde32731da7592106 Author: Alan Garny Date: Sat Dec 15 19:37:10 2012 +0100 ow use a wheel to change the delay between the output of two data points. commit 7b02807dfc9f73a04fb28691aadce75b083bc119 Author: Alan Garny Date: Sat Dec 15 15:42:03 2012 +0100 Now use a wheel to change the delay between the output of two data points. commit 50b693255fc7a87ff94f3beb52a710fdca11b1f2 Author: Alan Garny Date: Sat Dec 15 12:10:35 2012 +0100 Updated the developer documentation. commit 7637921428a0510b743f163282fad9288e209c84 Merge: 949210c2f eed8003d1 Author: Alan Garny Date: Sat Dec 15 12:03:15 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 949210c2f45119e5ee15c87c597ccf3ca82166c0 Author: Alan Garny Date: Sat Dec 15 03:17:59 2012 +0100 Upgraded QScintilla from version 2.6.2 to version 2.7. commit eed8003d1f0289bbab10674f4d01422f04a2ce0b Author: Alan Garny Date: Sat Dec 15 03:17:59 2012 +0100 Updated the developer documentation. commit ecaafa4bdc54c02044ec47fb70096fa838c9414a Author: Alan Garny Date: Sat Dec 15 02:25:03 2012 +0100 Upgraded QJSon from version 0.7.1 to version 0.8.1. commit 0feb4a7759bca3cf90f4553c07efef9cc1c93478 Author: Alan Garny Date: Fri Dec 14 18:17:45 2012 +0100 Use the VOI unit for any solver parameter that needs a unit (#112). commit 7b5d6db3c45c87b6050d0d1f8a055726f880a274 Author: Alan Garny Date: Fri Dec 14 17:23:29 2012 +0100 Some work on our solvers'\'' infrastructure. commit 6bb8ec5f4ee2297ed838132dda1ac095898b767c Author: Alan Garny Date: Fri Dec 14 17:08:19 2012 +0100 Some minor cleaning up. commit ab96a8dcd2e8593ffc7c1fced2718eccda13803d Author: Alan Garny Date: Fri Dec 14 16:40:18 2012 +0100 Support double clicking on a list item in our property editor widget, this to automatically go to the next item in the list (or go back to the first item, if needed). commit f6d292c53ac16d6ad95ef688b792d32c191e179b Author: Alan Garny Date: Fri Dec 14 15:39:42 2012 +0100 Can now show/hide the properties associated to a particular solver (#112). commit be28e25e181b4e838414bf82f0b6b0d0260f931d Author: Alan Garny Date: Fri Dec 14 14:46:54 2012 +0100 A minor fix for our SingleCellSimulation plugin. commit 0add656bc196e299fd42f66cf25bb795052eef91 Author: Alan Garny Date: Fri Dec 14 13:00:22 2012 +0100 Keep track of changes to a list property (#112). commit 9511d14878d0a9ed66b1ca018ac73d8801845ff0 Author: Alan Garny Date: Fri Dec 14 11:54:42 2012 +0100 Fixed a small issue with the resizing of headers in our property editor widget. commit 98f6c9b673c3edfe1bdc9ba103452f6e8b9930e1 Author: Alan Garny Date: Fri Dec 14 11:48:50 2012 +0100 Some minor cleaning up. commit 653ba7c9616bdeabaa18a73f64ab003e6f87dc04 Author: Alan Garny Date: Fri Dec 14 11:40:27 2012 +0100 Keep track of changes to a list property (#112). commit 7c0b5625141885a48f99959778d0e33b4a74a42a Author: Alan Garny Date: Thu Dec 13 18:09:56 2012 +0100 Minor editing. commit c53468b19672c2b368b114bb92b7e08038bba49c Author: Alan Garny Date: Thu Dec 13 18:01:02 2012 +0100 Some work on our property editor. commit fd300852948acab9c5f18f0cfc7757dc6387cee9 Author: Alan Garny Date: Thu Dec 13 17:27:07 2012 +0100 Improved TreeViewWidget so that double clicking anywhere on a row (as opposed to just in its first column) results in the row expanding/collapsing (if possible). commit 5367e3827e9bdaae0c6525e7b7ec3dcaf53b01b6 Author: Alan Garny Date: Thu Dec 13 16:58:44 2012 +0100 Some work on our solvers property editor (#112). commit a3b4836f7912d4160692d03c477122158800735f Author: Alan Garny Date: Thu Dec 13 15:14:05 2012 +0100 Some minor cleaning up. commit a80adc6240f3004897e6e440ce612ec2e7ec4570 Author: Alan Garny Date: Thu Dec 13 13:16:46 2012 +0100 Some work on our solvers property editor (#112). commit e5d393b09b10965fb9d0c739240c04f534a7f86a Author: Alan Garny Date: Thu Dec 13 11:51:00 2012 +0100 Some work on our property editor widget and solvers property editor (#112). commit fb01d87c7d8cc1f55f42545ebc2958b0880afbd6 Author: Alan Garny Date: Wed Dec 12 18:17:25 2012 +0100 Some work on our property editor widget and solvers property editor (#112). commit 7afa84b69aa166867beb871c3b2990c6eb4f5d43 Author: Alan Garny Date: Wed Dec 12 15:43:38 2012 +0100 Some minor cleaning up. commit 05bb179b61f5e3cf3151620423b10a35a8a94d2a Author: Alan Garny Date: Wed Dec 12 15:39:04 2012 +0100 Some work on our property editor widget and solvers property editor (#112). commit e5b0d472480bc17f2542cc957ffe9b919db6879c Author: Alan Garny Date: Wed Dec 12 14:49:23 2012 +0100 Some work on our solvers property editor (#112). commit bd0fb5fbf3f33c9bec034b6b1d2cb1e9f36e0993 Author: Alan Garny Date: Wed Dec 12 14:34:38 2012 +0100 Some work on our property editor. commit 76121f9a168e3120cd6175e88c63e1610b4150ae Author: Alan Garny Date: Tue Dec 11 18:07:38 2012 +0100 Minor fix to get things to build on Windows. commit f1d807eea403817f503494bed10b98f7d8e9c4c7 Author: Alan Garny Date: Tue Dec 11 17:56:45 2012 +0100 Reworked our property editor quite a bit to make it easier to expand. commit 597a6ccc929fe5c3d9bfac4126075d2596e2d2df Author: Alan Garny Date: Tue Dec 11 16:01:53 2012 +0100 Some work on our property editor widget. commit 2de2c40f9fec075dbfe32ec087f8ad69b42c0604 Author: Alan Garny Date: Tue Dec 11 14:51:07 2012 +0100 Improved our property editor widget and fixed a small GUI issue. commit ec9889c4e2c6d76eba487935fee60a266e4644f1 Author: Alan Garny Date: Tue Dec 11 14:25:48 2012 +0100 Some work on our property editor widget. commit 7070ac208d76c6944e7f34777105abb27a39dbee Author: Alan Garny Date: Tue Dec 11 13:52:10 2012 +0100 Some minor refactoring. commit f4d2e6dd4024d6545395c5da56b6fa59f3621b59 Author: Alan Garny Date: Tue Dec 11 13:52:02 2012 +0100 Some minor cleaning up. commit 1b114abfd7017f0bbe34de7a6e9e91178eb990b2 Author: Alan Garny Date: Tue Dec 11 13:33:25 2012 +0100 Some minor cleaning up. commit 4ec400ad4837b28ffa9c1cb11cfbbfff35716086 Author: Alan Garny Date: Tue Dec 11 13:33:15 2012 +0100 Some minor cleaning up. commit 71037fbad4324c9c5472d13c0e12ff24ed6fffaf Author: Alan Garny Date: Tue Dec 11 12:59:45 2012 +0100 Some work on supporing the '\''editing'\'' of a list item in our property editor. commit ce15ca2b44f2137b59c3a4de7c90392cdca7a0d9 Author: Alan Garny Date: Tue Dec 11 11:52:05 2012 +0100 Some work on supporing the '\''editing'\'' of a list item in our property editor. commit 5d838718835e182492cae30d3531d495e81551ac Author: Alan Garny Date: Mon Dec 10 18:23:14 2012 +0100 New snapshots. commit 4a3b7b6abfc3b1f9455de2b50ea746a26323e576 Author: Alan Garny Date: Mon Dec 10 18:21:03 2012 +0100 Minor fix for Windows. commit 3932de7864ffb76e814e1b820c8eb1d2424ab8e7 Author: Alan Garny Date: Mon Dec 10 18:03:16 2012 +0100 Fixed a small issue with the columns'\'' width of our Solvers property widget (#112). commit a97f0dcc9eb44b2348c80dbfb1a6e8a485c8f723 Author: Alan Garny Date: Mon Dec 10 17:29:12 2012 +0100 Some minor cleaning up. commit d3e81bd2e603e6354ade024d0266d3dd45c86f15 Author: Alan Garny Date: Mon Dec 10 17:01:56 2012 +0100 Fixed a small issue with our graph panels (#112). commit 575c160b057216777cdcb421a2b2f1d911a66506 Author: Alan Garny Date: Mon Dec 10 16:58:15 2012 +0100 Some minor cleaning up. commit 02b5dfb299bc8ec65746bc2dcfedc9d90a8251c0 Author: Alan Garny Date: Mon Dec 10 16:54:18 2012 +0100 Fixed some issues of splitters settings not being properly loaded/saved (due to them not being shown). commit fd41578a76517a11f95f01e4b46a66b698f1a49d Author: Alan Garny Date: Mon Dec 10 16:45:56 2012 +0100 Some minor cleaning up. commit eda63cdb260163fa188a0d9c034113d654b07c99 Author: Alan Garny Date: Mon Dec 10 15:37:54 2012 +0100 Some work on our simulation plugin (#112). commit cc49035959612f90498f6c8e0167e6cd78d611bd Author: Alan Garny Date: Mon Dec 10 15:20:00 2012 +0100 Some work on our simulation plugin (#112). commit 548acc0a6137e39aca763d8b599648d16bfbad85 Author: Alan Garny Date: Mon Dec 10 15:15:08 2012 +0100 Some work on getting access to the available solvers needed to compute a model (#112). commit dca8b105a444dab67020965ba7ea4ce6300d0a6b Author: Alan Garny Date: Mon Dec 10 13:08:43 2012 +0100 Some work on getting access to the available solvers needed to compute a model (#112). Also some minor cleaning up. commit e51cac278e067c3c0cfa2f62d5a89573a58ca23a Author: Alan Garny Date: Mon Dec 10 10:52:16 2012 +0100 Some work on getting access to the available solvers needed to compute a model (#112). commit 4967ef1c6587a8afaee50d2dff90f4c53f914611 Author: Alan Garny Date: Mon Dec 10 10:49:47 2012 +0100 Some work on getting access to the available solvers needed to compute a model (#112). commit 55a1dd30b7dfdbd5e8e7cf948f384a2856754bf4 Author: Alan Garny Date: Sat Dec 8 03:12:23 2012 +0100 Improved Core::CollapsibleWidget. commit 557ade151f80e64a6e99ae56f59d9f0ac119b8d5 Author: Alan Garny Date: Fri Dec 7 18:52:02 2012 +0100 Some work on our simulation plugin (#112). commit 92dd823fcd97cf31a76e7c18410d60256f58afa7 Author: Alan Garny Date: Fri Dec 7 17:29:16 2012 +0100 Decided not to use QtPropertyBrowser in the end (it required too much tweaking around to get what I wanted). commit 79107254c9ffb5381c5805a9f390b64e48137b9a Author: Alan Garny Date: Fri Dec 7 13:47:28 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 7d506c835af18b2d6104cb76753eed3862a3a619 Author: Alan Garny Date: Fri Dec 7 13:30:21 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 60d25d0c8089313076db9d141672c6c441419413 Author: Alan Garny Date: Fri Dec 7 13:10:14 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit d76c46ac3ecbcd49a47127962ad232df2e92dfdb Author: Alan Garny Date: Fri Dec 7 11:43:04 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 8e8a5a54ac804c93f82b4a0e2aa9d8ae7afbde8d Author: Alan Garny Date: Fri Dec 7 11:37:11 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit e461a05ff461664d7af67cb4a8ddbd848d2d09ec Author: Alan Garny Date: Fri Dec 7 11:30:55 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit b31c0502cc1ce0bae54f41b3c37431ae974fc7e5 Author: Alan Garny Date: Fri Dec 7 11:22:30 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 7cebe3bd7ad2b2f48a30dc7510023f7c5bd510e3 Author: Alan Garny Date: Fri Dec 7 11:19:06 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit dfd6826053f26f6a5d29d8e1a3c30bf4b24d7364 Author: Alan Garny Date: Fri Dec 7 10:59:46 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 4dd8880c5c1621f12bb44041f7ea44e9ad101e8f Author: Alan Garny Date: Fri Dec 7 10:32:24 2012 +0100 Some refactoring for our property editor. commit caa63230e8b9df35f796935ff65c52c26245ade5 Author: Alan Garny Date: Fri Dec 7 10:31:54 2012 +0100 Some refactoring for our property editor. commit ce5b9f1ad55ca2f7bea7891cec62ea47a3af26eb Author: Alan Garny Date: Fri Dec 7 10:06:10 2012 +0100 Some minor cleaning up. commit b7986b5a0ea721093114bd4fc67bca8ae449dde5 Author: Alan Garny Date: Thu Dec 6 18:56:56 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit f5dc423ce667c21e225ff35f985fbe3a1b1883f1 Author: Alan Garny Date: Thu Dec 6 18:14:35 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit fd2b22676e0f382a893549c22df0b395970c36be Author: Alan Garny Date: Thu Dec 6 16:40:43 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 1843fbb570ffd65041ead6a1e39f5639a1988aa3 Author: Alan Garny Date: Thu Dec 6 15:29:48 2012 +0100 Some minor cleaning up. commit 46d8165fa01824fb1031d6883f3ce6f420619e17 Author: Alan Garny Date: Thu Dec 6 14:53:40 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin (#112). commit 7dbf67a6fd0c4eb07b06fe902a762cbb2fbbe861 Author: Alan Garny Date: Thu Dec 6 14:12:38 2012 +0100 Improved our property browser widget. commit fb3c342e22ce0bc16bb7f6677726abd7530db468 Author: Alan Garny Date: Thu Dec 6 13:28:25 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin (#112). commit 25d8b9782776e9a0f4ae12bce1d913434c724e7d Author: Alan Garny Date: Thu Dec 6 11:34:08 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin (#112). commit 53127ab446b4690a7113ccf73f3826156a57d628 Author: Alan Garny Date: Thu Dec 6 10:17:31 2012 +0100 Some work on our simulation plugin (#112). commit 4616f5e78e8e2be5339178929b0106657a16350d Author: Alan Garny Date: Thu Dec 6 09:56:29 2012 +0100 Some minor cleaning up. commit d57a30f4034d2f1a34f3c3b2d58604b1b02ffe4c Author: Alan Garny Date: Wed Dec 5 17:40:59 2012 +0100 Some minor cleaning up. commit d9a70560a5db340268056486e5acda5ac1fb217e Author: Alan Garny Date: Wed Dec 5 17:40:26 2012 +0100 Some minor cleaning up. commit 12267a1fc685b911b7e9de829102bb5bf1068b7f Author: Alan Garny Date: Wed Dec 5 17:23:31 2012 +0100 Some minor refactoring. commit 4119d000bbfada5e01ea9a14ae2abdf7b9d87792 Author: Alan Garny Date: Wed Dec 5 17:03:14 2012 +0100 Some minor cleaning up. commit e5001f4929d2cddc2e8519d60882ea6f575dde78 Author: Alan Garny Date: Wed Dec 5 16:49:48 2012 +0100 Minor fix. commit 37c08dacf4ecf2fbafa0299c286887e86a6ff471 Author: Alan Garny Date: Wed Dec 5 16:45:21 2012 +0100 Some work on the simulation properties of our simulation plugin (#112). commit 3d4f4328f8bfd4afb9b42e9402d68784016e6da4 Author: Alan Garny Date: Wed Dec 5 16:44:58 2012 +0100 Some work on our support plugin for QtPropertyBrowser. commit 3fe992d7f4f3ff2e0ba564cf2f2ef88edb058d42 Author: Alan Garny Date: Wed Dec 5 15:15:19 2012 +0100 Some minor cleaning up. commit 193a7b7e4c90429fbf94a5f9d0a28409c1f911aa Author: Alan Garny Date: Wed Dec 5 14:18:11 2012 +0100 Some minor cleaning up of our collapsible widget. commit 3c00f3dd8b8024925d92560f4fb04c09baa6f432 Author: Alan Garny Date: Tue Dec 4 17:58:41 2012 +0100 Some minor cleaning up. commit 2723f9a2df2390e0848484a6b8a387b55dd5f3e3 Author: Alan Garny Date: Tue Dec 4 17:54:55 2012 +0100 Some minor cleaning up. commit 440a179693c7c870ad9540d5244281f14ebedd76 Author: Alan Garny Date: Tue Dec 4 17:47:22 2012 +0100 Some work on the simulation properties of our simulation plugin (#112). commit 348f694e76845adac27aecf428b9274d432caf84 Author: Alan Garny Date: Tue Dec 4 17:07:19 2012 +0100 Some work on setting up our property editor (#112). commit 1b22de0de07c37c09b21a96b7ecc6bc40196b701 Author: Alan Garny Date: Tue Dec 4 16:13:02 2012 +0100 Some minor cleaning up. commit 9ff702a0f912181b8d41da6d5a3be7e5f9df5a98 Author: Alan Garny Date: Tue Dec 4 15:09:54 2012 +0100 Some work on the simulation properties of our simulation plugin (#112). commit 3825a7cc2b81e858e2e10fd2b007997aed34c233 Author: Alan Garny Date: Tue Dec 4 14:54:45 2012 +0100 Some work on the simulation properties of our simulation plugin (#112). commit eae395c249d60686e1314506ff25d5d06b6dc6b3 Author: Alan Garny Date: Tue Dec 4 11:38:15 2012 +0100 Some minor fixes. commit 670c5f99ef202051cc03d07649bc1dff45031c44 Author: Alan Garny Date: Mon Dec 3 19:53:54 2012 +0100 New snapshots. commit ef70471042c55b53ad6eadaa51524f4220630356 Author: Alan Garny Date: Mon Dec 3 19:24:37 2012 +0100 Some minor fixes for things to build on Windows. commit fdc4009bb6577876a96ef09adf880b94edd898e1 Author: Alan Garny Date: Mon Dec 3 18:35:25 2012 +0100 Some work on setting up our property editor (#112). commit 22375211040f13de71edd0de1d164d697021f8a4 Author: Alan Garny Date: Mon Dec 3 18:30:55 2012 +0100 Some work on setting up our property editor (#112). commit be87d7f98b0bae885833dce5b66daf574f36aef2 Author: Alan Garny Date: Mon Dec 3 18:10:07 2012 +0100 Some work on setting up our property editor (#112). commit 61115bf12b20ad2d3968ae68702771288f017566 Author: Alan Garny Date: Mon Dec 3 18:09:16 2012 +0100 Some minor cleaning up. commit 3d2c2bb63accdbc7d8c4f8b1def294fafd57ee30 Author: Alan Garny Date: Mon Dec 3 18:01:21 2012 +0100 Some minor cleaning up. commit 278876cf52539c87011b340ae40f696573a72484 Author: Alan Garny Date: Mon Dec 3 18:00:45 2012 +0100 Fixed a very frustrating issue related to the translation of plugins. commit 582ed8c9b9b9d644935aa2eef73ded493681a7c0 Author: Alan Garny Date: Mon Dec 3 13:15:00 2012 +0100 Some work on setting up our property editor (#112). commit 66f32e0ae4a5470c758ce0e5708106bca271f6ae Author: Alan Garny Date: Mon Dec 3 11:37:29 2012 +0100 Some work on setting up our property editor (#112). commit dca7881ca808417375c16549cf5ad7e9ac54e2f0 Author: Alan Garny Date: Mon Dec 3 11:25:21 2012 +0100 Some minor cleaning up. commit 0069a3ce4f71ead3f471c7da61ed95b74ab42be9 Author: Alan Garny Date: Mon Dec 3 11:09:18 2012 +0100 Added a plugin to support QtPropertyBrowser. commit cfc97e8e00cde97fd18480466cddcb8dedc67042 Author: Alan Garny Date: Fri Nov 30 17:23:23 2012 +0100 Replaced our QwtSlider (for the delay between data points) with a QScrollBar in our simulation plugin (#112. commit 22a5e2c82b30d60cb6b15a6abda1d553a42a822d Author: Alan Garny Date: Fri Nov 30 13:23:55 2012 +0100 Some minor refactoring. commit ed687a780aa2ad7a0fb8a09a4b80d9c19fbf6d04 Author: Alan Garny Date: Fri Nov 30 10:11:24 2012 +0100 Minor improvement to our progress bar in our Simulation plugin (#112). commit 8b6537af959fd41c0bd5078646eff6ccc8768e3e Author: Alan Garny Date: Thu Nov 29 20:34:37 2012 +0100 Made sure that QtPropertyBrowser can be used on Windows (#118). commit 116b326e9a3460572f6855dea112a2c98ca97828 Author: Alan Garny Date: Thu Nov 29 18:52:20 2012 +0100 Some work on setting up our property editor (#112). commit 86796b35e95b9818cde28f8c94f9d057c99d005b Author: Alan Garny Date: Thu Nov 29 18:32:16 2012 +0100 Minor cleaning up. commit 3f585920382e209e69d7071dfa7cdefadbddd78b Author: Alan Garny Date: Thu Nov 29 18:21:07 2012 +0100 Trying out QtPropertyBrowser. commit af95a7e0f11e0ad93169fa1f9a2d13c83cbc4ea7 Author: Alan Garny Date: Thu Nov 29 16:58:36 2012 +0100 Some minor cleaning up. commit 8b8203e470431704a72b7af2c073cfcaea4d1873 Author: Alan Garny Date: Thu Nov 29 16:14:42 2012 +0100 Finally got QtPropertyBrowser to build as a plugin (closes #118). There are likely going to be a few minor changes to the widget'\''s source code to get access to the classes we will need. commit ac9fc5cb79818914bbb1de358302a5edc22c8bc5 Author: Alan Garny Date: Thu Nov 29 10:03:02 2012 +0100 Fixed a former omission (closes #119). commit f56d2e0061d6e8a6ca838491a53e207d3b64fb7c Author: Alan Garny Date: Wed Nov 28 16:04:22 2012 +0100 Some work on adding support for QtPropertyBrowser (#118). commit 3dcd09fbaea25a05cf5c5ae0b4c7726b6c138140 Author: Alan Garny Date: Wed Nov 28 16:01:19 2012 +0100 Some minor cleaning up. commit f61779a1572f7514dce80f093329d2624d0e9dfd Author: Alan Garny Date: Wed Nov 28 15:46:18 2012 +0100 Minor update to the developer documentation. commit 1bd185b8a6d090caf3bb81157fe06fe61aa30f55 Author: Alan Garny Date: Wed Nov 28 14:41:50 2012 +0100 Some minor refactoring. commit 0cd90ccacdee7721036711f3e24c1398cd16ee5e Author: Alan Garny Date: Wed Nov 28 14:31:29 2012 +0100 Improved SingleCellSimulationViewProgressBarWidget (#112). commit 60c5a44ce23eb96592b32a03cf520aa22becccd0 Author: Alan Garny Date: Wed Nov 28 14:20:48 2012 +0100 Some minor cleaning up. commit 5e5b5094ac9b783f919f5a2a750964749745e286 Author: Alan Garny Date: Tue Nov 27 18:34:16 2012 +0100 Some work on our solvers widget and our new parameters widget (#112). commit bc533ddddd10bd1d78faed0cf2f26eb43f6f130b Author: Alan Garny Date: Tue Nov 27 18:14:01 2012 +0100 Refactoring PropertyEditorWidget a bit as part of our work on #112. commit b30d7efd7566aad77a3888ac2b5f2a07d3b308ae Author: Alan Garny Date: Tue Nov 27 17:48:23 2012 +0100 Some work on our solvers widget (#112). commit cdd7a785265ae1d3a0cf17f659611b99a9aa8aa9 Author: Alan Garny Date: Tue Nov 27 16:39:37 2012 +0100 Minor improvement to our CellMLAnnotationView plugin. commit e74cd0bd0b0d271e12bbcbfb9a199d774c20f6a4 Author: Alan Garny Date: Tue Nov 27 16:30:04 2012 +0100 Minor cleaning up. commit 913adb675309faa0cd8a1b671f9762d78b8159cb Author: Alan Garny Date: Tue Nov 27 16:18:38 2012 +0100 Some minor cleaning up. commit 300d3ac7f28071c3f8ada850c46d98bab23eab35 Author: Alan Garny Date: Mon Nov 26 20:00:25 2012 +0100 New snapshots. commit 634284a5c20a3e84646d3535b67db755c4657163 Author: Alan Garny Date: Mon Nov 26 19:49:46 2012 +0100 Addressed the fact that semanticSBML now generates identifiers.org URIs and added some safeguards too (closes #117). commit 90321e45707a9561a023ac3c2c685ee43ad11309 Author: Alan Garny Date: Mon Nov 26 17:35:54 2012 +0100 Some work on our solvers widget (#112). commit bfc613accc621e187c0951aa2803d36b780cf79c Author: Alan Garny Date: Mon Nov 26 16:19:06 2012 +0100 Some work on our solvers widget (#112). commit cb14bf881e9843c80f21b861340ac5e5a36dbc19 Author: Alan Garny Date: Mon Nov 26 16:09:37 2012 +0100 Some minor cleaning up. commit 9c8eab3185631c6bdec13a756c0f459ee2ef69a5 Author: Alan Garny Date: Mon Nov 26 15:56:35 2012 +0100 Some minor refactoring. commit 98ccbb30cfabadf0e853d91e28c592c50ff67f0d Author: Alan Garny Date: Mon Nov 26 15:12:32 2012 +0100 Some minor refactoring. commit f8f2006f84e7f2be107781eb25f13e1fa7c41b5a Author: Alan Garny Date: Mon Nov 26 14:35:44 2012 +0100 Started work on our solvers widget (#112). commit 1c22d98235a1e6f28e12f6e8a8f6d84d1cfe657f Author: Alan Garny Date: Mon Nov 26 13:37:16 2012 +0100 Some minor refactoring and cleaning up. commit ba414e07e171a8f128f57762dce35884bca66e51 Author: Alan Garny Date: Mon Nov 26 13:22:31 2012 +0100 Some minor refactoring. commit f748660e3463fca0039609c7f4e21b991119f149 Author: Alan Garny Date: Mon Nov 26 13:04:26 2012 +0100 Determine the type of solvers that are required for a model (#112). commit f39ab8c85e05ec7d31dc08f36a2a6bbc72ca7df0 Author: Alan Garny Date: Mon Nov 26 11:17:53 2012 +0100 Some minor refactoring. commit aa3499a13830fa3484a00ab31e14d486514d735f Author: Alan Garny Date: Sat Nov 24 16:28:00 2012 +0100 Some minor refactoring. commit e9d06901e17a3c1937c18ecc83ca06a499ae6dfc Author: Alan Garny Date: Sat Nov 24 15:09:31 2012 +0100 Quite a bit of refactoring with regards to the use of theme colours. commit a5c9e85f6fa237755b7df76318673815681f5cfa Author: Alan Garny Date: Sat Nov 24 14:36:55 2012 +0100 Created our own very simple progress bar for our SingleCellSimulationView plugin (closes #116). Also fixed a couple of theme issues. commit e49317a4000e006ef3d704dd4ff18a910019ad5f Author: Alan Garny Date: Sat Nov 24 14:09:17 2012 +0100 Some minor cleaning up. commit 77da0587c688b369534a41007b9a1e742a9ce80f Author: Alan Garny Date: Sat Nov 24 06:04:32 2012 +0100 Minor improvement to our simulation plugin (#112). commit ec268993577b1f37508f27ceb1a784342dd3826a Author: Alan Garny Date: Sat Nov 24 05:52:03 2012 +0100 Argh, Clang doesn'\''t seem to be able to switch optimisations off for only one function. Otherwise, I did previously mention that QThread::usleep() is not reliable on at least Windows, but QThread::msleep() is (and also is on Linux and OS X), so... we now us that instead for the delay between data points while running a simulation (#112). commit aba3dd579f4c004c5241a6a6e0d3b6354e251e9e Author: Alan Garny Date: Sat Nov 24 04:31:20 2012 +0100 To use QThread::usleep() for the delay between data points while running a simulation (#112) wasn'\''t a good approach. It just doesn'\''t work (and can even hang OpenCOR) on Windows. So, instead, we now compute an exponential to '\''waste'\'' time. Note: the current code works on both Windows and Linux, but is likely not going to work on OS X yet. commit 2da7bf6ee1cd950e95d9b55f29563a06aacac0da Author: Alan Garny Date: Sat Nov 24 04:02:00 2012 +0100 To use QThread::usleep() for the delay between data points while running a simulation (#112) wasn'\''t a good approach. It just doesn'\''t work (and can even hang OpenCOR) on Windows. So, instead, we now compute an exponential to '\''waste'\'' time. Note: the current code works on Windows, but is likely not going to work on Linux and OS X since a #pragma needs to be found for those platforms. commit 1891f57e737138ac87c137c1af1f75457d052391 Author: Alan Garny Date: Fri Nov 23 19:13:03 2012 +0100 Improved things when it comes to the delay between data points while running a simulation (#112). commit 6d0e723faed32a292787ae4390042a99bc705322 Author: Alan Garny Date: Fri Nov 23 18:45:31 2012 +0100 Some minor cleaning up. commit 0471f1762e900baab79375c47c1f8404a06c50c5 Author: Alan Garny Date: Fri Nov 23 18:21:34 2012 +0100 A bit of refactoring for simulation plugin (#112). commit b1590ec288ee262f1edcb88eff3fb412de792f73 Author: Alan Garny Date: Fri Nov 23 17:31:51 2012 +0100 Some minor cleaning up. commit 4b201cc5a6c76c1ba8b374b8dd82127e26abffb6 Author: Alan Garny Date: Fri Nov 23 17:28:37 2012 +0100 Can now change the delay between data points while running a simulation (#112). commit d203175b5514bf1d9f01be57590a825584e3eb5b Author: Alan Garny Date: Fri Nov 23 17:19:43 2012 +0100 Done with the delay in the plotting of data points (#112). commit cabe67f301fe920bd04f92f5b014fe6f768bdf93 Author: Alan Garny Date: Fri Nov 23 16:41:47 2012 +0100 Some work on implementing a delay in the simulation data output (#112). commit d129f47552a03f71a92161a646c551dab71d0b1f Author: Alan Garny Date: Fri Nov 23 16:34:19 2012 +0100 Some work on implementing a delay in the simulation data output (#112). commit cd2220576e76580b1e6b23b9954df21ee6c71895 Author: Alan Garny Date: Fri Nov 23 16:07:55 2012 +0100 Some work on implementing a delay in the simulation data output (#112). commit c865646a8fb73f98e9b348ab44b49b92ed23ca5c Author: Alan Garny Date: Fri Nov 23 14:44:29 2012 +0100 Make sure that file tab icons are up-to-date when switching modes/views. Also some minor cleaning up. commit 973a21080a518a1a2861c30f105bf7e0b50eae25 Author: Alan Garny Date: Fri Nov 23 12:54:36 2012 +0100 Starting some work on resetting the file tab icons after having changed modes/views. commit 254c4314d3f503115939e59ca6e920d0950622b0 Author: Alan Garny Date: Fri Nov 23 11:15:50 2012 +0100 Don'\''t show the simulation progress (in a file tab) for the current simulation (#112). commit 766d0f106beac4b5dae66a57397bdbd408b2ecd7 Author: Alan Garny Date: Thu Nov 22 19:00:05 2012 +0100 Minor improvement to our simulation plugin (#112). commit f5d0a13c1644c17eabf9b90660709964709e7b69 Author: Alan Garny Date: Thu Nov 22 18:48:55 2012 +0100 Minor improvement to our simulation plugin (#112). commit fb26cb2daa7ae8e80a8e5251cdd765c468a36702 Author: Alan Garny Date: Thu Nov 22 18:43:06 2012 +0100 Done with keeping track of a simulation progress in a file tab (#112). commit 3972161c67ff84cbbde6fdeb580b94611780d20c Author: Alan Garny Date: Thu Nov 22 17:39:17 2012 +0100 Some minor cleaning up. commit fa82e2d99a1f92b1c796ec64ba333ecf06cfc085 Author: Alan Garny Date: Thu Nov 22 17:16:08 2012 +0100 Updated jQuery from version 1.8.2 to version 1.8.3. commit 04361dc11f3998d7dfa25afbe5a725a996ae9037 Author: Alan Garny Date: Thu Nov 22 17:08:25 2012 +0100 Fixed a small issue with our simulation plugin (#112). commit 0ff1433332eff09095e54fea5924905fcd9e1135 Author: Alan Garny Date: Thu Nov 22 17:03:55 2012 +0100 Some minor cleaning up in our simulation plugin (#112). commit 0103eb5736032d58b0d707c6efdd37e68ec42a96 Author: Alan Garny Date: Thu Nov 22 16:55:45 2012 +0100 Some minor cleaning up in our simulation plugin (#112). commit 2c029bae128fb9a5cfd9edf83e2677dd533ac384 Author: Alan Garny Date: Thu Nov 22 16:27:51 2012 +0100 Minor improvement (#112). commit 723e741c0b31473e203a7a4b34142e54a099d810 Author: Alan Garny Date: Thu Nov 22 15:48:25 2012 +0100 Minor fix to our simulation plugin (#112). commit efee95684e3692dee766c3effd59af435b8025bb Author: Alan Garny Date: Thu Nov 22 15:39:42 2012 +0100 Some work towards showing the progress of a simulation in its corresponding file tab (#112). commit 660f74e67fdb83b9867f85240b61efcac8c92dbe Author: Alan Garny Date: Wed Nov 21 17:02:41 2012 +0100 Minor cleaning up. commit 30b03bd19b2cfc591d1fc8dd22e7446f17eef4f6 Author: Alan Garny Date: Wed Nov 21 16:58:53 2012 +0100 Minor cleaning up. commit 213f48442d93220e33b99a19567fc265557d1669 Author: Alan Garny Date: Wed Nov 21 15:52:29 2012 +0100 Minor cleaning up. commit 33e5569866b3b078094e422a1bafded8ddda6150 Author: Alan Garny Date: Wed Nov 21 15:42:03 2012 +0100 Some minor cleaning up. commit 201b5fb31378f55af35c87ba2cf478adce509da5 Author: Alan Garny Date: Wed Nov 21 13:56:17 2012 +0100 Can now run several single cell simulations at once since each of them runs in its own thread (#112). commit 1aa0804107910ebc9c5cacdf4ebbeddaba68aee5 Author: Alan Garny Date: Wed Nov 21 10:45:49 2012 +0100 Some minor cleaning up and refactoring. commit 3434323e0e5775b7743dad18e61da4a651515f59 Author: Alan Garny Date: Wed Nov 21 10:14:53 2012 +0100 Some minor cleaning up. commit b6847c34c62a5965a08ce6462163dec92a6a9ba4 Author: Alan Garny Date: Tue Nov 20 17:40:08 2012 +0100 Simplified our simulation framework and got the threading to work properly as a result of it (#112). (To keep pressing F9 on Windows and Ubuntu 32-bit would have eventually resulted in a core dump.) commit 74d832debef91e60a4f85e2be4ba95e00732de1d Merge: 3c8dad5b2 ddae8ae2c Author: Alan Garny Date: Tue Nov 20 16:52:02 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3c8dad5b2c49a844a17785298291038d941ca5c0 Author: Alan Garny Date: Tue Nov 20 16:49:59 2012 +0100 Slight improvement to our simulation class (#112). commit ddae8ae2cbcc9241ee2ad78b12ced5072609f3e1 Author: Alan Garny Date: Tue Nov 20 15:31:16 2012 +0100 Minor correction. commit 354a86d2b34a7127a227dd14ab0dd6a5522dc9c8 Author: Alan Garny Date: Tue Nov 20 13:52:33 2012 +0100 Minor correction. commit a0aa3b5b6ab806c55f7b4bbb1228f76cb37b7ef9 Author: Alan Garny Date: Tue Nov 20 13:42:12 2012 +0100 Minor improvement to our simulation worker (#112). commit b400daf6f3dd852aaebced13f2d4ffb7bb122cbc Merge: c1a01ffe6 0a079045e Author: Alan Garny Date: Tue Nov 20 13:15:32 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit c1a01ffe63f96084c8a08e31619c6b2c7585e860 Author: Alan Garny Date: Tue Nov 20 13:15:02 2012 +0100 Minor correction to a comment. commit 0a079045ecfd0020d6693f3ecd3d319aea558c17 Author: Alan Garny Date: Mon Nov 19 20:01:00 2012 +0100 New snapshots. commit 70083e1ecf55c848552548c840ae9bc6fdd84943 Author: Alan Garny Date: Mon Nov 19 18:07:26 2012 +0100 Some minor cleaning up. commit b3c634cf9f80e6d3ed354b2f8dd20b4be51d7c38 Author: Alan Garny Date: Thu Nov 15 18:13:31 2012 +0100 Minor GUI improvement to our SingleCellSimulationView widget (#112). commit 2ce2bc4af824db9180e365ca50faf51f2ee70f74 Author: Alan Garny Date: Thu Nov 15 18:03:28 2012 +0100 Some minor cleaning up (#112). commit 6a913439228000d6e78e6c70ead28a755e17493c Author: Alan Garny Date: Thu Nov 15 17:46:59 2012 +0100 Forgot the final simulation progress (#112). commit 0354f0fe549e3483ceb4f19dd78a3d41ae85985b Author: Alan Garny Date: Thu Nov 15 17:27:30 2012 +0100 Can now get the elapsed time for a simulation (#112). Also some minor cleaning up. commit 894309d78bde1b1899848b1fd70b6462ed697bfd Author: Alan Garny Date: Thu Nov 15 16:58:57 2012 +0100 Make sure that the simulation settings are sound and if not then let the user know about it (#112). commit 7c60facbf5d65e2bd385b5a3481b85d7a2b0539b Author: Alan Garny Date: Thu Nov 15 15:11:13 2012 +0100 Some minor cleaning up. commit aca513a1d1f6ba3d44d174861fc80bef2a503195 Author: Alan Garny Date: Thu Nov 15 14:59:30 2012 +0100 Added a few safeguards (#112). commit 22356b0d05e32d7c3b25e4eb5a5f68fc9f8e8493 Author: Alan Garny Date: Thu Nov 15 14:36:16 2012 +0100 Can now keep track of the progress of a simulation (#112). commit 57b3a61debc301583d5891da3cfef86adbbb3132 Author: Alan Garny Date: Thu Nov 15 14:35:37 2012 +0100 Some minor cleaning up. commit 75fd3dc0ec985e2bdd4e5d02cefedbfe6875fa5e Author: Alan Garny Date: Thu Nov 15 14:03:26 2012 +0100 Done with our threaded simulation worker (#112). commit 37abaf3852750214627722660fbcd07b3d1f6c55 Author: Alan Garny Date: Wed Nov 14 17:32:23 2012 +0100 Cleaning up our SingleCellSimulationView plugin now that we are '\''properly'\'' working on it (#112). (This means that right now we can'\''t run any simulation at all...) commit ab2d55c4f57d9ea413f387277f791e69b75ec518 Author: Alan Garny Date: Wed Nov 14 16:52:02 2012 +0100 Skeleton for our simulation worker (#112). commit 9956393f262795055aa96aa16f8c460ca4bd3a69 Author: Alan Garny Date: Wed Nov 14 15:37:51 2012 +0100 Some work on PropertyEditorWidget (#112). commit c48a8298ea603d28ab40567a30795a7a3eb6a6db Author: Alan Garny Date: Wed Nov 14 14:57:20 2012 +0100 Fixed (as much as possible) an issue with our Plugins window on OS X. The issue was that some dependencies and/or descriptions were not fully visible. Now, things are better, but there are still some cases where things look a bit funny. commit 7e93ddf6b939ac0aa66eb31463add718d3e101c6 Author: Alan Garny Date: Wed Nov 14 13:50:18 2012 +0100 Some minor cleaning up. commit 006464e116798cd1bddd8c6556300bd89df87985 Author: Alan Garny Date: Wed Nov 14 13:43:42 2012 +0100 Create the correct editor for a property (#112). commit 6615951179de4f61f65b8c03d5d670007574f59a Author: Alan Garny Date: Wed Nov 14 11:12:51 2012 +0100 Missed one UTF8-related thingy. commit 483e4b4b15f4f0ebfb83fc3058c9f3b1633d5a8c Author: Alan Garny Date: Wed Nov 14 11:09:05 2012 +0100 Some work on our SingleCellSimulation plugin (#112). commit b66db3c3943cf15dde30b7ca0e48a809ccb04634 Author: Alan Garny Date: Tue Nov 13 17:05:48 2012 +0100 Hmm… processing pending events while running a simulation makes things very slow on Linux (and probably Windows too) while it'\''s '\''fine'\'' on OS X. commit cb6ada3da63d997c6798a929d0fbadfaa7675730 Author: Alan Garny Date: Tue Nov 13 17:00:55 2012 +0100 Some work on our SingleCellSimulation plugin (#112). commit 305358ad43cc72bf307c5fb2d1f27f48f7ec04a3 Author: Alan Garny Date: Tue Nov 13 16:16:25 2012 +0100 Some work on our SingleCellSimulation plugin (#112). Keep track, within an OpenCOR session, of the user'\''s settings for a given model. commit f59186c152255622c3230fc613036a42df1812fc Author: Alan Garny Date: Tue Nov 13 14:53:33 2012 +0100 Some work on our SingleCellSimulation plugin (#112). commit beca35cbcfd65dd8aa6e7733e953e6c757e7f4aa Author: Alan Garny Date: Tue Nov 13 14:21:53 2012 +0100 Some work on our SingleCellSimulation plugin (#112). Now uses the user'\''s settings for the starting and ending points, as well as the point interval. commit 5af4fe602e5d06e4894945fbe90b98369d5b079d Author: Alan Garny Date: Mon Nov 12 19:28:01 2012 +0100 New snapshots. commit 3e85a142001edd2d73ae2dfb463c9ddc4b4ddd7f Author: Alan Garny Date: Mon Nov 12 19:25:23 2012 +0100 Fixed some French plugin descriptions. (I thought I was done with the encoding of some files, but I guess I was still be wrong!) commit c3a5571fff0d182f66d95781e740d087cee9642c Author: Alan Garny Date: Mon Nov 12 19:07:06 2012 +0100 Fixed some French plugin descriptions. (I thought I was done with the encoding of some files, but I guess I was and might still be wrong!) commit 142d85e8e6107214eede9b357dc564286110f87b Author: Alan Garny Date: Mon Nov 12 19:02:03 2012 +0100 Fixed some French plugin descriptions. (I thought I was done with the encoding of some files, but I guess I was and might still be wrong!) commit 2b30f6ec9bd3a8709fdb33ac09a478bdf633db07 Author: Alan Garny Date: Mon Nov 12 18:49:05 2012 +0100 Fixed a small issue with the initialisation of the locale when starting OpenCOR. commit 7dbcd3ff44bd18a6f76f02d8aee6884b3abb85df Author: Alan Garny Date: Mon Nov 12 18:35:52 2012 +0100 Some work on our SingleCellSimulation plugin (#112). Can now retrieve the variable of integration and thus determine the unit to be used for our simulation information. Also some minor improvements here and there. commit 23ff103f8754ef24ff25185050cb72ee14c88c83 Author: Alan Garny Date: Mon Nov 12 16:27:33 2012 +0100 Some minor cleaning up. commit 7ab04b142044b670631ccc928a1029340c3e3063 Author: Alan Garny Date: Mon Nov 12 13:35:16 2012 +0100 A small hack to get, on Windows at least, PropertyEditorWidget->loadSettings() to work properly. commit cc975049c77cb680e56ca6f6a9768968995eca84 Author: Alan Garny Date: Sun Nov 11 15:31:58 2012 +0100 Minor cleaning up. commit 6ef27d6ac5f5d3a56a30aec23693a3ebcb29f866 Author: Alan Garny Date: Sun Nov 11 02:24:11 2012 +0100 Addressed an issue with regards to plugins using a format version which is not the same as the one used by OpenCOR. commit b93d858e73b8becd805210e4ed5c32a80aee69d1 Author: Alan Garny Date: Sun Nov 11 01:46:47 2012 +0100 Minor cleaning up. commit d5090a958e819d1fe24611d4246d1d4584dc8f52 Author: Alan Garny Date: Sun Nov 11 01:41:29 2012 +0100 Minor cleaning up. commit d8b627a051eec20bc7399e870acbab18fc941b54 Author: Alan Garny Date: Sun Nov 11 01:35:51 2012 +0100 Minor cleaning up. commit 795cd45e5bc6b0f9e779319dcc45cd995803d3ff Author: Alan Garny Date: Sun Nov 11 01:15:33 2012 +0100 Minor cleaning up. commit 00e63d924fef1f275b9a9cab1f73fa0eaba80c30 Author: Alan Garny Date: Sun Nov 11 01:01:24 2012 +0100 Minor cleaning up. commit 2f5005ce19b42278ea384ba806ad0f6c44fcca26 Author: Alan Garny Date: Fri Nov 9 18:35:24 2012 +0100 Some work on our SingleCellSimulation plugin (#112). commit 05d436493b527d49a4e188f5cdfc2f6c0128f36a Author: Alan Garny Date: Fri Nov 9 17:41:12 2012 +0100 Some work on our SingleCellSimulation plugin (#112). commit 3c88d65153bc83dc462e3b07cc24678fc6774a62 Author: Alan Garny Date: Thu Nov 8 18:18:58 2012 +0100 Minor improvement to FileBrowserWidget. commit d596fa52c72df74b6c3f0d633d06ebea7e36db3b Author: Alan Garny Date: Thu Nov 8 18:12:14 2012 +0100 Some work on PropertyEditorWidget (#112). Also some minor cleaning up. commit 34b0decff94f212f876dcf922c8ce397fbad5d89 Author: Alan Garny Date: Thu Nov 8 17:40:50 2012 +0100 Prevent some QTreeView headers from being moved. commit de5b036bb08733e0f630c36963ed60f6674fb56b Author: Alan Garny Date: Thu Nov 8 17:35:08 2012 +0100 Minor improvement to CollapsibleWidget. commit 270a63d5541cb56c2253e44d8a93d3e18335d213 Author: Alan Garny Date: Thu Nov 8 17:30:40 2012 +0100 A minor fix for PropertyEditorWidget (#112). commit f6a3ba4a7da55829fbabe2e3023d6fe2458fbfc6 Author: Alan Garny Date: Thu Nov 8 17:28:34 2012 +0100 Implemented load/saveSettings() for CollapsibleWidget and make use of them in SingleCellSimulation (#112). commit d246e76da4fb7da0bddffd1759ff9917a854e747 Author: Alan Garny Date: Thu Nov 8 17:05:30 2012 +0100 Improved CollapsibleWidget. commit fbe92afda74ac020ef5ec0e212761c7c113b6520 Author: Alan Garny Date: Thu Nov 8 16:45:11 2012 +0100 Some work on PropertyEditorWidget (#112). commit 37fac51e933bcb53e03a31df50e97342bfd76537 Author: Alan Garny Date: Thu Nov 8 16:25:21 2012 +0100 Simplified CollapsibleWidget. commit a0ba94e3d8747d992e95116c8124e568e8545f0b Author: Alan Garny Date: Thu Nov 8 16:16:57 2012 +0100 Some work on PropertyEditorWidget (#112). commit 54de38a77dc648e75171e477e4446b7df4bf9c50 Author: Alan Garny Date: Thu Nov 8 14:33:29 2012 +0100 Improved CollapsibleWidget. commit 7063cc64b1f60df658a14c72680b22b9543920ae Author: Alan Garny Date: Thu Nov 8 14:06:33 2012 +0100 Minor update to our developer documentation. commit c1d9a2483f20b97f5054b5018a4e7702991e9f13 Author: Alan Garny Date: Thu Nov 8 13:54:54 2012 +0100 Address a focusing issue as well as did some work on PropertyEditorWidget (#112). commit 0601adc5baa62243d1d327488d4c6890a4ad14e6 Author: Alan Garny Date: Thu Nov 8 13:04:22 2012 +0100 Some minor cleaning up. commit 851fdb6f7db57e76112ad0bacc9a010768347891 Author: Alan Garny Date: Thu Nov 8 11:56:29 2012 +0100 Minor corrections (#112). commit cb48bebb2ffc97724cde782cda5b708a6e6f6873 Author: Alan Garny Date: Thu Nov 8 11:49:23 2012 +0100 Some work on PropertyEditorWidget (#112). commit 1a4db68ce351303f78faa7082f3fd52374867fa9 Author: Alan Garny Date: Wed Nov 7 17:51:37 2012 +0100 Some work on PropertyEditorWidget (#112). commit d537ea2e63ae33b5aaf7eee8120f53e8634ee716 Author: Alan Garny Date: Wed Nov 7 16:36:21 2012 +0100 Some minor cleaning up. commit 4c83ccfb7e8dd0a8645d0e124c8ca259500ffe1e Author: Alan Garny Date: Wed Nov 7 15:17:06 2012 +0100 Quite a bit of work on PropertyEditorWidget (#112). commit f28753075fcd4d6ab7ee67c9c34b701a83089b3a Author: Alan Garny Date: Wed Nov 7 08:32:07 2012 +0100 Minor update to the website'\''s downloads page. commit b8a1e504c51237b873cd8654f27475dfcba13430 Author: Alan Garny Date: Tue Nov 6 18:03:29 2012 +0100 Some work on PropertyEditorWidget (#112). commit 0858053afbf7572c485f6401e253d356bf033bed Author: Alan Garny Date: Tue Nov 6 17:19:01 2012 +0100 Minor comment. commit c6c4f717b2dc3d2a6d06300a834ebe2f2202a868 Author: Alan Garny Date: Tue Nov 6 17:09:18 2012 +0100 Some cleaning up for PropertyEditorWidget (#112). commit fcc232fd4db8b1e56d36ac35fe1af6a621ba0bcd Author: Alan Garny Date: Tue Nov 6 16:27:29 2012 +0100 Some work on PropertyEditorWidget (#112). commit f19b282cc36e49dcaaf1898150225eb317c1810c Author: Alan Garny Date: Tue Nov 6 15:51:24 2012 +0100 Fixed a small focus issue with our RawCellMLView plugin. commit de6d5644bae866cfe741bbcef59783123e14b55d Author: Alan Garny Date: Tue Nov 6 15:29:19 2012 +0100 Fixed a small UTF-8 issue. commit 882c7255d096ec255bfd3fdf45b017d64707b5b6 Author: Alan Garny Date: Tue Nov 6 14:47:29 2012 +0100 Changed the encoding of some files (thus making it easier to edit using Qt Creator on OS X). commit e81d7777b4a980dca38ea94a69523aa78771fed9 Author: Alan Garny Date: Tue Nov 6 11:05:46 2012 +0100 Some work on PropertyEditorWidget (#112). commit a177e400cb358e7acdbcb362c9721b46cd65cd50 Author: Alan Garny Date: Tue Nov 6 10:20:13 2012 +0100 Some work on PropertyEditorWidget (#112). commit f368d4da6f93e2dc734cb394c318a2145a4cd843 Author: Alan Garny Date: Tue Nov 6 09:41:43 2012 +0100 Some work on PropertyEditorWidget (#112). commit b179769ff06e1d36df3bee62c24689d6b7c1cf42 Author: Alan Garny Date: Mon Nov 5 18:40:27 2012 +0100 New snapshots. commit 74d3c7a87b269c7142c5cf4c2bd4f942571f53da Author: Alan Garny Date: Mon Nov 5 17:57:56 2012 +0100 Some work on PropertyEditorWidget (#112). commit 5e2be0e411037bbaa02d5ccc727c983dea84c736 Author: Alan Garny Date: Mon Nov 5 17:42:05 2012 +0100 Some work on PropertyEditorWidget (#112). commit 5863f53b31b692481a1ed8a41f22a5c978933066 Author: Alan Garny Date: Mon Nov 5 17:20:01 2012 +0100 Some work on PropertyEditorWidget (#112). commit 506b7adfff8cb455f9ed7b2701be17ec7ace4210 Author: Alan Garny Date: Mon Nov 5 16:29:05 2012 +0100 Some work on PropertyEditorWidget (#112). commit 5eab11242d6420eb58aee4354a9e1481e2d74c54 Author: Alan Garny Date: Mon Nov 5 15:49:28 2012 +0100 Minor cleaning up. commit f22d986ad0bf7a10c3e8c9080b698880c5bcacb3 Author: Alan Garny Date: Mon Nov 5 12:54:37 2012 +0100 Some work on PropertyEditorWidget (#112). commit 1f01debc6ef8cbfddb1ac047346953d9ca316256 Author: Alan Garny Date: Mon Nov 5 11:32:33 2012 +0100 Some minor cleaning up. commit d8d3898de9a8c62c5d07946c1d5fbbd88be49948 Author: Alan Garny Date: Mon Nov 5 11:22:38 2012 +0100 Some work on PropertyEditorWidget (#112). commit 3ec97e282abf9673119a9bdeba8bde072bd31bf5 Author: Alan Garny Date: Mon Nov 5 10:48:28 2012 +0100 Some minor cleaning up. commit 073ad3f729e843b2ea5b9810159fc37bfbe20e51 Author: Alan Garny Date: Fri Nov 2 17:45:18 2012 +0100 Some minor cleaning up. commit 97f9a20a17bfbf8be7d0b2cc99af8bac68d4febd Author: Alan Garny Date: Fri Nov 2 17:04:57 2012 +0100 Some work on PropertyEditorWidget (#112). commit 1cd4f2388f1228681f93ee568fe65c0f9099da47 Author: Alan Garny Date: Fri Nov 2 17:03:40 2012 +0100 Some minor cleaning up. commit a5a64651d9a8bc02b0843a0ebb21d0147adc8d47 Author: Alan Garny Date: Fri Nov 2 11:47:16 2012 +0100 Slight updates to our documentation now that Ubuntu 12.10 is out and that we support it. commit d62a285b5a4b5fbf56d19f80c5620303ffe1a812 Author: Alan Garny Date: Thu Nov 1 17:08:08 2012 +0100 Upgraded to version 1.12 of the CellML API. commit b6cbd14a6e52f9fdae0fb664a61d42d8f03f8cf5 Author: Alan Garny Date: Thu Nov 1 16:19:41 2012 +0100 Fixed the issue related to the saving of the SingleCellSimulation plugin'\''s settings (closes #115). commit eea6bd334b8ad1df8ad9a18a2a1f40ad20fe03d9 Author: Alan Garny Date: Thu Nov 1 15:44:21 2012 +0100 Some minor cleaning up. commit 215706ed81053f50e58d4135a699aa91a7461558 Author: Alan Garny Date: Thu Nov 1 15:36:47 2012 +0100 Some minor cleaning up. commit 65240d16f9ab8d78a182a5abb74b2a07eaa6af4e Author: Alan Garny Date: Thu Nov 1 14:56:40 2012 +0100 Fixed the issue with the borderColor() method. The issue was that borderColor() used to be declared as a '\''normal'\'' function (in coreutils.cpp|h), but its use couldn'\''t be resolved when used from CommonWidget. The only difference with other classes which also use coreutils methods seems to be that CommonWidget is not a Qt-based class. It'\''s not all clear to me, but all I know is that the method can'\''t be resolved at link time, so… I moved borderColor() to CommonWidget and made it static so that it can be called from anywhere, and it works fine even though I don'\''t really like it (borderColor() really ought to be a '\''normal'\'' function). commit 798cffc43a36f756399889d4dc452052ab032a6a Author: Alan Garny Date: Thu Nov 1 12:29:49 2012 +0100 Minor comment. commit f95e80e6a085410a4fa4d276d1bac29bcb575214 Author: Alan Garny Date: Thu Nov 1 11:19:48 2012 +0100 Minor comment. commit 1864608e51b9f92dfa72a5d78f9601f3fb8181ee Author: Alan Garny Date: Wed Oct 31 21:06:52 2012 +0100 Minor improvement to our newLineWidget() method. commit 4cf41c30def24dd7fee75e164c3c3a5f2da44905 Author: Alan Garny Date: Wed Oct 31 20:54:32 2012 +0100 Minor cleaning up. commit 78a0989c0477b312890f5998f06fcc640ab683fe Author: Alan Garny Date: Wed Oct 31 20:32:22 2012 +0100 Minor comment. commit c06d580b1c6eb55dd975402d1403a5469649e5d6 Author: Alan Garny Date: Wed Oct 31 20:10:18 2012 +0100 Got our new way retrieving the colour of a border to work. It'\''s a bit (lot?) of a hack, but no other choice?... commit 3d4f5bf117df7dcb275724bc878ae7058586babf Author: Alan Garny Date: Wed Oct 31 19:26:28 2012 +0100 Slight fix for Windows and Linux. commit de23014d1334c78904170ab83b2bd4d1187aaa8c Author: Alan Garny Date: Wed Oct 31 19:18:00 2012 +0100 Slight fix for Windows and Linux. commit c85504147acccc1fb47f9bea7938cc7738f84b9b Author: Alan Garny Date: Wed Oct 31 19:12:41 2012 +0100 Various changes which should never have been committed in one big time! commit 768fcb450967a93206d57ff2b35b652371ee747d Author: Alan Garny Date: Wed Oct 31 15:08:34 2012 +0100 Some minor cleaning up. commit a9dbc501ac00c1986b9337f0f6042d1bf85d04be Author: Alan Garny Date: Wed Oct 31 14:43:02 2012 +0100 Some work on PropertyEditorWidget. commit d1b0956f3645ff519877aee2c24747e9e1561560 Author: Alan Garny Date: Wed Oct 31 14:39:27 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 8061ae1497447da0a226f33b6607e0162d11a748 Author: Alan Garny Date: Wed Oct 31 14:00:37 2012 +0100 Some work on PropertyEditorWidget. commit 63c0a8f981ac413325c953e3b34cf7df41b7966e Author: Alan Garny Date: Wed Oct 31 11:49:36 2012 +0100 Minor Windows-related fix as a result of removing a .ui file (#114). commit 8926ac4290016d5e005d8009b8d0c7daf5175ab3 Author: Alan Garny Date: Wed Oct 31 11:21:52 2012 +0100 Forgot to remove a .ui file (#114). commit e398e18f9d53107dfb2a8118c366d85caf4dc9dc Author: Alan Garny Date: Wed Oct 31 11:21:29 2012 +0100 Some refactoring which consisted of removing a .ui file (#114). commit c6cbf0bff1848dc5267a6c3c230d4383c67d7e8f Author: Alan Garny Date: Wed Oct 31 11:09:23 2012 +0100 Some refactoring which consisted of removing a .ui file (#114). commit 74676df3a1d2ead2a438ea4b1253385821229762 Author: Alan Garny Date: Wed Oct 31 10:44:41 2012 +0100 Some minor cleaning up. commit 00106f7e0622f2676f8e5caeb2596a899e35a70f Author: Alan Garny Date: Wed Oct 31 10:37:54 2012 +0100 Some refactoring which consisted of removing a .ui file (#114). commit 61f175664799eaee63fb39ad871f18dbe538fc3b Author: Alan Garny Date: Wed Oct 31 10:11:05 2012 +0100 Some refactoring which consisted of removing a .ui file (#114). commit ee007b228175147c50ef5f03604d0bcfc4d577d7 Author: Alan Garny Date: Tue Oct 30 18:31:14 2012 +0100 Some refactoring which consisted of removing a .ui file (#114). commit 05ae54ec047563f635f110a92c895038264309bb Author: Alan Garny Date: Tue Oct 30 17:59:30 2012 +0100 Some work on our Simulation collapsible widget (#112). Also some minor cleaning up. commit c9783d3e9ef39cb1dd6f8442ce9028c27175cf10 Author: Alan Garny Date: Tue Oct 30 17:42:12 2012 +0100 Some minor cleaning up. commit 2e6fc89fa22cf974cfb5d23535e10bbbc3f81192 Author: Alan Garny Date: Tue Oct 30 17:35:10 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 49736b4e3825a5d5223cf0c90313747e7275f6ce Author: Alan Garny Date: Tue Oct 30 17:12:02 2012 +0100 Some work on our property editor widget (#112). commit d014703bca3fcebbf2c1974f0dce1853c0afc90d Author: Alan Garny Date: Tue Oct 30 16:59:35 2012 +0100 Some minor cleaning up. Just renamed ToolBar to ToolBarWidget and TreeView to TreeViewWidget. commit 12b66f5762fe88b0eb0738e994055bcbb66c401c Author: Alan Garny Date: Tue Oct 30 16:58:55 2012 +0100 Some minor cleaning up. Just renamed ToolBar to ToolBarWidget and TreeView to TreeViewWidget. commit c5e8ee1113e74ccb0d674a8431096053473c1b10 Author: Alan Garny Date: Tue Oct 30 16:27:45 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 592b516ebd767af77b1366713e724db787b05e83 Author: Alan Garny Date: Tue Oct 30 16:18:41 2012 +0100 Reverted some recent changes. I got carried away and wanted to use some of Qt Designer'\''s components, but this is not the right approach. At least two reasons: 1) we need three columns (parameter, value and units) and not only two; and 2) Qt Designer'\''s property editor displays the properties of a QObject instance. So, we would have to dynamically set properties to an '\''empty'\'' QObject instance, but then there is the issue of the '\''objectName'\'' property being there by default… Also, what about properties having properties of their own? Whatever the case, it seems like Qt Designer'\''s property editor is not the way to go. Instead, we will probably have to use a QTreeView. commit f7e8b9237b53543c11237febc7d1d68d69a1b918 Author: Alan Garny Date: Tue Oct 30 15:59:14 2012 +0100 Revert "Some work on our Simulation collapsible widget (#112)." This reverts commit adc61a5a2af5d19cb465b2f2fe955719e6fb9604. commit 9ba5baf5af184dcc48e015dfff3e724996919fbb Author: Alan Garny Date: Tue Oct 30 15:59:14 2012 +0100 Revert "Some work on our Simulation collapsible widget (#112)." This reverts commit 47c618e8098cb79900bf22f3aba7a99300da54fc. commit 8cb319ca7669d85264eb3805dc137aa3adc695ea Author: Alan Garny Date: Tue Oct 30 15:59:14 2012 +0100 Revert "Some work on our Simulation collapsible widget (#112)." This reverts commit cbf97cce5d62febf67b25fb417c0f0055cb0ea41. commit 8487beab20c13ead47ef99d6ff18dace2813d29c Author: Alan Garny Date: Tue Oct 30 15:59:14 2012 +0100 Revert "Some work on our Simulation collapsible widget (#112)." This reverts commit 6bf20f8c80ecd30e79a4b7a8692cff2fd1e703fc. commit 6aa6c850d283ea0c5ecb705ed259c2186be98005 Author: Alan Garny Date: Tue Oct 30 15:21:37 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 07b2ca4daaa21d1b1d37ca6d03ccda0139f6b807 Author: Alan Garny Date: Tue Oct 30 14:46:40 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 7ac5234db667b527d08e34c9c188d2c8d8c1180c Author: Alan Garny Date: Tue Oct 30 14:12:40 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 40ad2410e444360dfbb3063040621e74ddf78b30 Author: Alan Garny Date: Tue Oct 30 13:12:55 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 0f97c00cb8153932a1cf9da81c1a18a18058ca36 Author: Alan Garny Date: Mon Oct 29 19:19:41 2012 +0100 Updated OpenCOR'\''s snapshot. commit a787eaf808f9c7c120b262c14c6103300a5329ce Author: Alan Garny Date: Mon Oct 29 19:06:16 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 4c2070b7cae586786e71c44f20f25eb6d4b8ebf9 Author: Alan Garny Date: Mon Oct 29 18:54:46 2012 +0100 Some minor aesthetic improvements to our collapsible widget. Also some minor cleaning up. commit ef0abf353984ef1ce5b0059efe094f9ba94a2d5b Author: Alan Garny Date: Mon Oct 29 18:37:18 2012 +0100 Slightly improved our collapsible widget. commit 7e2a387e9e99628ecfd74313b259162f16f835a6 Author: Alan Garny Date: Mon Oct 29 17:05:52 2012 +0100 Some work on our Simulation collapsible widget (#112). commit 398fabfa114846ac07a22220bf56ed3a1faa9f16 Author: Alan Garny Date: Mon Oct 29 16:28:36 2012 +0100 Minor improvement to our CollapsibleWidget. commit 18a54d1d2e26cc382e3408e03e76796a75796db0 Author: Alan Garny Date: Mon Oct 29 16:25:53 2012 +0100 Some work on our General collapsible widget in our SingleCellSimulation plugin (#112). commit 71d1657265a9458c8faf6d8197cd802adaa3cad7 Author: Alan Garny Date: Mon Oct 29 15:58:55 2012 +0100 Some work on our General collapsible widget in our SingleCellSimulation plugin (#112). commit d705402b7c786df88d82638325ab8d33c2db905b Author: Alan Garny Date: Fri Oct 26 19:05:58 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin (#112). commit 15efa24e24b4729e32a59727ef2c04d176053d27 Author: Alan Garny Date: Fri Oct 26 18:29:22 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin (#112). commit 0cfd4124ffdf5197f8bee767cd9e8438488be2d3 Author: Alan Garny Date: Fri Oct 26 18:20:21 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin (#112). commit c0733dfa084c614913b843e610d397a1d4b75f0b Author: Alan Garny Date: Fri Oct 26 16:42:21 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 0239d2d810a9f4c6a7f9cca10c1c73ccf020c539 Author: Alan Garny Date: Fri Oct 26 11:46:16 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit f59b036dceae7aa660432c8d7420054c89a68acd Author: Alan Garny Date: Fri Oct 26 11:12:36 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 78e438e886cc7c1907e55af0311f9fe1eeb4b4c1 Author: Alan Garny Date: Fri Oct 26 10:31:09 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit a5bd119cc6a998b4535a5dcf0a2cafa0412c12cd Author: Alan Garny Date: Fri Oct 26 10:27:26 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 8f1d2252d7e342dfc05cb8ae12445326fc48222a Author: Alan Garny Date: Thu Oct 25 18:38:39 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit eeafe594cb31f826d7fe3ebfd5fc88f07b9e52a8 Author: Alan Garny Date: Thu Oct 25 17:32:05 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 537fd686183feba94c3c351723f1ba499452dcf5 Author: Alan Garny Date: Thu Oct 25 17:16:57 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 20e42a121b9b7482df0c1a977f08587b2e6255f2 Author: Alan Garny Date: Thu Oct 25 16:11:27 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 179ed16b9e67f5a14e3c8a71809219630534cdb0 Author: Alan Garny Date: Thu Oct 25 14:21:01 2012 +0200 Some minor cleaning up (follow Qt'\''s way of passing a parent to a widget'\''s contructor). commit 6c285dd9eae3c681f58736a72c8ba029a99fa740 Author: Alan Garny Date: Wed Oct 24 17:29:47 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). Also some minor cleaning up. commit 3466fc5a66ec1a06cca163dea74c752ecbe9afb6 Author: Alan Garny Date: Wed Oct 24 15:01:24 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit bd3b2ccc4d53a6b4afb0f2cc037a34c9025298a1 Author: Alan Garny Date: Wed Oct 24 14:41:51 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin (#112). commit 324a88900decbe915e74400f112083be249f5682 Author: Alan Garny Date: Wed Oct 24 11:45:12 2012 +0200 Updated our .gitignore file commit f52a822b131d6fdbfbc8ddf6291f3bca90213788 Author: Alan Garny Date: Tue Oct 23 10:12:28 2012 +0200 '\''Upgraded'\'' to version 1.12rc2 of the CellML API. commit a7c10771c92a2f362a89e6f223a30fc8f86b726a Author: Alan Garny Date: Mon Oct 22 17:19:48 2012 +0200 Working on our contents widget for the SingleCellSimulation plugin (#112). commit 32e85a00b68e505815664836a8f170aec8a7296e Author: Alan Garny Date: Mon Oct 22 16:04:11 2012 +0200 Keep track of our contents'\'' splitter'\''s sizes (#112). commit 629d23fcb040dc5e1e870962501d42b9b34cec56 Author: Alan Garny Date: Mon Oct 22 15:11:32 2012 +0200 Improved the rendering of a line widget (the wrong colour was used on OS X). commit 5ef3704bc69c71fb82e4b85ab6d803de7468ca19 Author: Alan Garny Date: Mon Oct 22 15:02:31 2012 +0200 Improved the rendering of a line widget (the wrong colour was used on OS X). commit d3e7e38a26143aef75082beab968fa7a8792b7c4 Author: Alan Garny Date: Mon Oct 22 13:08:21 2012 +0200 Some work on our SingleCellSimulation plugin (#112). commit e3be1d64ec76aaac800d75f8a3aa66041c53ad43 Author: Alan Garny Date: Fri Oct 19 17:36:25 2012 +0200 Created a new snapshot for OpenCOR. commit 6e71ceb4fcb0d80d3814b6559f2f2d8f91a96068 Author: Alan Garny Date: Fri Oct 19 17:20:26 2012 +0200 Some work on our SingleCellSimulation plugin (#112). commit 757a3371357611601e48dc6aeb0fe20afe7ce990 Author: Alan Garny Date: Fri Oct 19 17:15:04 2012 +0200 Some work on our SingleCellSimulation plugin (#112). commit 4447b4df699e3610402c255702b20f0b5efcc80f Author: Alan Garny Date: Fri Oct 19 17:03:43 2012 +0200 Some work on our SingleCellSimulation plugin (#112). commit c96fe0373243acea14a70aa8d67d78b27e81a00c Author: Alan Garny Date: Fri Oct 19 16:48:47 2012 +0200 Some minor cleaning up. commit 17800aa71ff871bb0638ab81579475e768b4d699 Author: Alan Garny Date: Fri Oct 19 16:34:18 2012 +0200 Some work on our SingleCellSimulation plugin (#112). commit 1610e5ed7625eb83e44c01f3211c0bc63941bc4d Author: Alan Garny Date: Fri Oct 19 12:52:46 2012 +0200 Upgraded the CellML API to the latest snapshot (17 October). commit bd49b7b7ee8ad44119d4c8e43b09e8ba80aac312 Author: Alan Garny Date: Fri Oct 19 10:17:26 2012 +0200 Fixed the user rights of some Shell scripts which got changed by mistake. commit d809a7478f06f9febff638161a4ab9185dda1fa0 Author: Alan Garny Date: Thu Oct 18 17:42:45 2012 +0200 Minor update to the developer documentation. commit 08cf157d88b1866483283be1b0a30a7100fd5759 Author: Alan Garny Date: Tue Oct 16 17:58:23 2012 +0200 Minor update to the developer documentation. commit 0d608abaaefbabd9a447c00ea5c7558c889ed3b4 Author: Alan Garny Date: Tue Oct 16 17:50:32 2012 +0200 Minor update to the developer documentation. commit 5ab97578b0f835c43f8b9a039c56ea42a61f9b33 Author: Alan Garny Date: Tue Oct 16 14:12:51 2012 +0200 Made sure that, on OS X, the CoreSolver plugin gets properly referenced by plugins that need it. commit 6bc57ca20d63dba2fb78ed8b6cfc8673f477950c Author: Alan Garny Date: Tue Oct 16 13:53:59 2012 +0200 Slight update to the developer documentation. commit ddce95171e52444c09e82c87a3cf22e17af0616c Author: Alan Garny Date: Sun Oct 14 17:45:10 2012 +0200 Minor update to our downloads page. commit a2c7d406931324955709170dc4808f33919d9bc9 Author: Alan Garny Date: Sun Oct 14 15:29:31 2012 +0200 Let the user know whether a model contains any non-linear algebraic system. commit 8bc0022295ba67305751934f3529ade1a0a4ea7d Author: Alan Garny Date: Sun Oct 14 14:49:00 2012 +0200 Addressed an issue with an external function not being found by LLVM on Linux (closes #111). commit 77bea63ea3c9fe4a2a2803889c8979427df433f7 Author: Alan Garny Date: Sun Oct 14 14:40:05 2012 +0200 Some minor cleaning up. commit f8483bbc0489eb715baecf3d6976430bc3d51fc3 Author: Alan Garny Date: Sun Oct 14 14:34:53 2012 +0200 Some minor cleaning up. commit 2055f8cb2c361090cd0725412202b4ad4be1ed85 Author: Alan Garny Date: Sun Oct 14 13:08:13 2012 +0200 Some minor cleaning up. commit 9ed678e421aeeee88274e37c9a66e0fd6430deb7 Author: Alan Garny Date: Sun Oct 14 02:22:37 2012 +0200 Some minor cleaning up. commit 3ec43cf4b4053b8d08a2a8dd40cfe1e935ac381b Author: Alan Garny Date: Sun Oct 14 01:44:55 2012 +0200 Improved our Compiler plugin. commit e680a4d8ea4b8e02618cdac2bfd59d76968d3ebe Author: Alan Garny Date: Sun Oct 14 00:48:22 2012 +0200 Some minor cleaning up. commit 21e9df6801375934f5052d47a0a962e57d323f08 Author: Alan Garny Date: Sat Oct 13 12:10:51 2012 +0200 Done with supporting the use of non-linear algebraic solvers (closes #111) and KINSOL in particular (closes #108). commit 17f6cf7708bff47fdadad57ad25bb6eb2ae5a885 Author: Alan Garny Date: Fri Oct 12 14:12:50 2012 +0200 Some work on supporting non-linear algebraic solvers (#108). commit e6ec1fa005fa1f5aaa6e3b53a7525d7721226943 Author: Alan Garny Date: Fri Oct 12 13:47:49 2012 +0200 Some work on supporting non-linear algebraic solvers (#108). commit 87f0a647c5712892c439dceabc6dafd957d58b7b Author: Alan Garny Date: Fri Oct 12 10:30:27 2012 +0200 Some work on supporting any non-linear algebraic solver (#108). commit d9d13cf1f190ec715be583017a7568c600fc07d6 Author: Alan Garny Date: Fri Oct 12 09:34:49 2012 +0200 Added a new CellML file to our list of supported CellML files (#108). commit 37f2a5a529a69f8fb9779610e5f7ddd545306149 Author: Alan Garny Date: Thu Oct 11 18:38:12 2012 +0200 Some minor cleaning up. commit bbd0f63b9e8eb76ce7997f36070694645a1527e9 Author: Alan Garny Date: Thu Oct 11 17:28:17 2012 +0200 Clean up the CellML API generated C code. commit f7bd316b34e33543f44e88f75955d017d565b57a Author: Alan Garny Date: Wed Oct 10 18:36:26 2012 +0200 Some work towards supporting KINSOL (#108). commit 65b78a4337658db75735574bbe9f95e6a6ce7314 Author: Alan Garny Date: Wed Oct 10 18:05:50 2012 +0200 Some work towards supporting KINSOL (#108). commit 1dceaec63bcda05574f53cb799c16dd58e78ed7c Author: Alan Garny Date: Wed Oct 10 16:20:01 2012 +0200 Some minor cleaning up. commit 341e5930ef47512b45b685dcd4f7bf85d83290cb Author: Alan Garny Date: Wed Oct 10 11:48:52 2012 +0200 Minor comment. commit df5908cfc17abe7baf799e863d064b41abd8dd18 Author: Alan Garny Date: Wed Oct 10 10:48:16 2012 +0200 Improved the generation of C code for a CellML file (#108). commit f97283a18b4062e6deb0ee5da130112d3b3c257c Author: Alan Garny Date: Wed Oct 10 10:01:35 2012 +0200 Upgraded the CellML API to version 1.12rc1 (Windows). commit 649884dd221a9452f7ecef556a6a8d6c43fc9aad Author: Alan Garny Date: Tue Oct 9 15:50:59 2012 +0200 Minor cleaning up for our DAE solver (#108). commit 3ca82e694935f4ab8f9c3937b610618ad8e4a1d2 Author: Alan Garny Date: Tue Oct 9 15:38:22 2012 +0200 Minor cleaning up for our DAE solver (#108). commit 24d4d0035220e59d81d2519bc80142a89d8e025f Author: Alan Garny Date: Tue Oct 9 15:35:27 2012 +0200 Minor cleaning up for our DAE solver (#108). commit 87cac703c5f6120a967a8586d54f19d8ff4b3dd1 Author: Alan Garny Date: Mon Oct 8 18:28:08 2012 +0200 Minor update to our developer documentation. commit d72355b4f0c55219cb1426f833d8c960391db3b9 Author: Alan Garny Date: Mon Oct 8 18:21:23 2012 +0200 Allow a couple more CellML files to be run (#108). commit 287b07a9c5bfdbf320d1694632041fa1dcd43388 Author: Alan Garny Date: Mon Oct 8 16:26:16 2012 +0200 Upgraded the CellML API to the snapshot of 3 October 2012 (Windows). commit c23e20ba3f6d443f12430043f547b563b788eb6f Author: Alan Garny Date: Mon Oct 8 16:17:06 2012 +0200 Very minor update to the QtSingleApplication tool. commit f133c4d8b75bd5139d44a34bf87adf3bb7ac73fb Author: Alan Garny Date: Sat Oct 6 16:44:52 2012 +0200 Reduced the size of a picture used on the website. commit 8de4d90ffc25200d06b21ef64dab5acfa7b2d798 Author: Alan Garny Date: Thu Oct 4 16:40:38 2012 +0200 Allow a file which doesn'\''t have a file extension of .cellml to be a CellML file (closes #109). commit 74545c4a451b5077bf252d5d5b6e4bd379022b15 Author: Alan Garny Date: Thu Oct 4 16:34:02 2012 +0200 Some minor cleaning up. commit 4921175b4cefc1f34dcfce88eb433a7d83cf1f37 Author: Alan Garny Date: Mon Oct 1 17:13:41 2012 +0200 Improved the updating of a CellML file runtime. commit 60e4a11043d93a0284271d7b2c115a67d3c87037 Author: Alan Garny Date: Mon Oct 1 12:39:53 2012 +0200 Minor improvement to our CoreSolver plugin (and our DAE solver class in particular). commit 54da6176a3607037a18fc6ea2224a663359681a0 Author: Alan Garny Date: Sat Sep 29 15:02:10 2012 +0200 Some work on fully supporting DAE models (#108). commit 0c8ab9d45211ac3f59e587ee2b9e3399c0fea564 Author: Alan Garny Date: Sat Sep 29 14:03:15 2012 +0200 Some work on fully supporting DAE models (#108). commit 1f837215e20bc37a917ae36f604eb3c53061383a Author: Alan Garny Date: Fri Sep 28 19:25:05 2012 +0200 Updated the OpenCOR snapshot. commit 0c016d3915308ec1dec71244bf36861eab2aa83b Author: Alan Garny Date: Fri Sep 28 17:51:03 2012 +0200 Some work on fully supporting DAE models (#108). Also some minor cleaning up. commit 2b71efd3668bad7a784bb802162f27cea4e3c473 Author: Alan Garny Date: Fri Sep 28 15:19:58 2012 +0200 Some work on fully supporting DAE models (#108). commit 6d4a458b3becfcbb2e695e1891bd34567288871a Author: Alan Garny Date: Fri Sep 28 12:36:31 2012 +0200 Some work on fully supporting DAE models (#108). commit 3e2eee4d9c6f281aafeecef37b0dbdef167dedc3 Author: Alan Garny Date: Thu Sep 27 18:45:36 2012 +0200 Minor fix for our SingleCellSimulation plugin. commit 94a454233abb12f53514ffc45b7390bff9a5f4a2 Author: Alan Garny Date: Thu Sep 27 18:20:42 2012 +0200 Some minor debug improvements. commit 70a1165037caa447cb421bac83e5829302179325 Author: Alan Garny Date: Thu Sep 27 18:17:10 2012 +0200 Some more work on our '\''new'\'' Compiler plugin. commit 20e220db7d2951cf5c052901b5fa8406ba4f1da5 Author: Alan Garny Date: Thu Sep 27 15:53:01 2012 +0200 Some minor cleaning up of our Compiler plugin. commit 8773da1abf2ee5746cf967bbcf98b209b9a3303b Author: Alan Garny Date: Thu Sep 27 15:50:27 2012 +0200 Renamed our Computer plugin to Compiler plugin (since this is what that plugin really does rather than be a computer!). commit 0acb69b77c384b06b7f3fcf3b6e23da3d182c214 Author: Alan Garny Date: Thu Sep 27 13:42:31 2012 +0200 Some major cleaning up of our Computer plugin. commit c7e7033c931f9b4449a1c042465f91df6e490ec9 Author: Alan Garny Date: Thu Sep 27 11:04:57 2012 +0200 Some minor cleaning up of our Computer plugin. commit 09bc8b8dcc6ee1b44c3ca49c3f4c0557eefe55f2 Author: Alan Garny Date: Thu Sep 27 10:43:59 2012 +0200 Some minor cleaning up of our Computer plugin. commit 1f6b8dbb3c9112a0f7537134ba2ac6959a68bc1d Merge: ca7c059bc 403b2e359 Author: Alan Garny Date: Wed Sep 26 18:04:57 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit ca7c059bc9653a0ef84120a0a476c1d55d0bc312 Author: Alan Garny Date: Wed Sep 26 17:14:57 2012 +0200 Working on adding support for KINSOL (#108). commit 403b2e359d2d964153ef586036c25a06747f4d6e Merge: a7a036fff 860e37d16 Author: Alan Garny Date: Wed Sep 26 14:31:51 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 860e37d161be739285b225117d60d8266a49254f Author: Alan Garny Date: Wed Sep 26 14:20:29 2012 +0200 Upgraded, on Windows, the CellML API binaries to the snapshot version of 26 September 2012. commit a7a036fffbacb59cc0e0ad999fa812b4c8961916 Author: Alan Garny Date: Wed Sep 26 13:32:50 2012 +0200 Working towards our KINSOL plugin (#108). commit 93efedfcb65910775b9c5bcaafd228ca36c0f34e Author: Alan Garny Date: Wed Sep 26 11:49:14 2012 +0200 Working towards our KINSOL plugin (#108). commit 50b84e1df5aee0aeff0b1ff1f50444a2deb8c30a Author: Alan Garny Date: Wed Sep 26 10:19:34 2012 +0200 Added KINSOL to our SUNDIALS plugin (#108). commit 1c730334d9b98b94babf4e2b1bc9ab56c66b59ca Author: Alan Garny Date: Tue Sep 25 19:44:26 2012 +0200 Some work on the documentation. commit a9f734bc5aed0d1bcb37d4ac2f8c53a83c2b32d9 Author: Alan Garny Date: Tue Sep 25 19:42:01 2012 +0200 Some work on the documentation. commit 3e84a1a16d88ed168c7fe46a2a67b713661a288e Merge: 3e828b8f8 f957029c5 Author: Alan Garny Date: Tue Sep 25 19:34:17 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit f957029c50c746c892d52ff66693588593ec15d3 Author: Alan Garny Date: Tue Sep 25 18:52:40 2012 +0200 Some work on the documentation. commit 2b0750cdba656f47f4007f2353bec7f1d1ef6007 Author: Alan Garny Date: Tue Sep 25 18:49:38 2012 +0200 Some work on the documentation. commit cef628995ef58e269ede119b5b0a27496b5a8dc7 Author: Alan Garny Date: Tue Sep 25 18:17:25 2012 +0200 Some work on the user documentation. commit bc7235dc76deadf80988b2a6d9e61f026990cf97 Author: Alan Garny Date: Mon Sep 24 13:44:58 2012 +0200 Update QJson directly from its Git repository. commit 8672c8626376908f4f6295811e30fd3acefb813b Author: Alan Garny Date: Mon Sep 24 12:50:10 2012 +0200 Some work on our documentation. commit 6a4d6659f95e47e3f47197daaae90cada8ef632b Author: Alan Garny Date: Mon Sep 24 11:04:52 2012 +0200 Some work on our documentation. commit 1b578b9eaa1b5194e29cf973cdbde308c004cbd0 Author: Alan Garny Date: Mon Sep 24 10:56:48 2012 +0200 Some work on our documentation. commit 3e828b8f822afda33313eae0862f3d57f725db24 Author: Alan Garny Date: Sun Sep 23 01:12:20 2012 +0200 Slight improvement to our documentation. commit 8c4a313ce2c90f81965b8e4e164f82ad1eaf7933 Author: Alan Garny Date: Sun Sep 23 01:07:22 2012 +0200 Slight improvement to our documentation. commit 2f0b1543680d468b116c0db385f9d1e1f8f063c6 Author: Alan Garny Date: Sun Sep 23 01:05:04 2012 +0200 Slight improvement to our documentation. commit a77b8c10f19afa467e36850148b49dd1dd744454 Author: Alan Garny Date: Sun Sep 23 00:35:46 2012 +0200 Slight improvement to our documentation CSS menu. commit adc49c0c49630cfbab7e67cf8232ced0536d4cfb Author: Alan Garny Date: Sat Sep 22 02:02:40 2012 +0200 Slight improvement to our website homepage. commit ecd95c90b18373ceb75cc1bf843978e6571734ae Author: Alan Garny Date: Fri Sep 21 21:20:15 2012 +0200 Some work on the downloads page for the website. commit 6ccf033c2cd8a09a6a7768ae02c3ff8fae2c3b7d Author: Alan Garny Date: Fri Sep 21 18:30:34 2012 +0200 Reworked the documentation quite a bit since gcc required an awful lot of memory to build our Help plugin. This was due to our help containing some dissemination stuff (PDF+PPTX), resulting in a C++ file being something like 34MB big! commit a410bad48e264f28317f0f9d5188a2094315ada2 Author: Alan Garny Date: Fri Sep 21 18:27:45 2012 +0200 Updated jQuery from version 1.8.1 to version 1.8.2. commit abb0b606d2fab2aa46c28491116163888af1b101 Author: Alan Garny Date: Thu Sep 20 19:07:36 2012 +0200 Some work on the user documentation. commit 59619bf6bcdcf89df9cb5085615ef553ca3e81bd Author: Alan Garny Date: Thu Sep 20 17:32:13 2012 +0200 Some work on the user documentation. commit 4d6404dba54672c1c8cda0ba3ff4bb410f91bd73 Merge: e41ff0f6b a04f26a16 Author: Alan Garny Date: Thu Sep 20 16:20:46 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit e41ff0f6ba092582a4501714bda8252d5a5ee381 Author: Alan Garny Date: Thu Sep 20 16:17:53 2012 +0200 Some work on the user documentation. commit fce0c6ff2c04c9b9420c4b29d1d72ef697010923 Author: Alan Garny Date: Thu Sep 20 15:16:27 2012 +0200 Some work on the user documentation. commit fab13edcb6cc0326eafab12eb88009cec15f6d88 Author: Alan Garny Date: Thu Sep 20 11:42:16 2012 +0200 Some work on the user documentation. commit a04f26a162ccee6acf5af8ad572a676addf8c7cb Author: Alan Garny Date: Thu Sep 20 10:44:31 2012 +0200 Minor update to the developer'\''s documentation as a result of upgrading from Xcode 4.4.1 to Xcode 4.5. commit 584a5f7d51e21f9eaf5d09d93758d63f78256356 Author: Alan Garny Date: Thu Sep 20 07:49:30 2012 +0200 Minor update to the user documentation. commit ad25375254e93535aad49e7c879450e241996b9a Author: Alan Garny Date: Wed Sep 19 17:50:08 2012 +0200 Some work on the user documentation. commit 5202fcb4823d53595d9e910823f5858c94feba1e Author: Alan Garny Date: Wed Sep 19 17:44:12 2012 +0200 Some work on the user documentation. Also some minor improvements here and there to OpenCOR itself. commit 2f55e7c5df6d773997aef1c21de1991ec012704e Author: Alan Garny Date: Wed Sep 19 15:33:52 2012 +0200 Some minor improvements to the documentation and some GUI messages. commit 5c39f65d87b7ed3751105653725350933c6452bd Author: Alan Garny Date: Wed Sep 19 13:51:11 2012 +0200 It doesn'\''t matter, but apparently "doctype" should be capitalised, so... commit 9584e67cd85af0e1dcedfd61fb75f8d157499882 Author: Alan Garny Date: Wed Sep 19 13:44:45 2012 +0200 In the documentation, to show a full-size screenshot (from say the user interfaces page) used to work fine on the website, but not in OpenCOR. When the screenshot was shown, then to go '\''back'\'' would get us back to the page we had visited prior to visiting the user interfaces page while it should have got us back to the user interfaces page. I guess this is due to the fact that we generated the whole image page and QtWebKit got slightly lost as a result of it. Anyway, now, we have a '\''proper'\'' image page and it all works fine. commit ce002b671a24c4d1ad3545303b4474ea787d5273 Author: Alan Garny Date: Wed Sep 19 11:06:00 2012 +0200 Minor fix to one of our JavaScript functions. commit 4d12f863988879dfeca5bedec57cccc13d013c54 Author: Alan Garny Date: Wed Sep 19 10:35:52 2012 +0200 Minor updates to the developer documentation. commit ff75603c56a65800b208546b48abbbc0d3173c1f Author: Alan Garny Date: Wed Sep 19 10:22:47 2012 +0200 Minor update to our documentation. Also updated the Qt-related French file. commit 7b68114f0489db6c54edd10d04186f6e68f7d422 Author: Alan Garny Date: Tue Sep 18 20:36:32 2012 +0200 Some work on the user documentation. commit e361f5df109219d962cabe89c501cab363df3dd9 Author: Alan Garny Date: Mon Sep 17 18:28:20 2012 +0200 Worked some more on our user documentation. Also cleaned the documentation a bit in general. commit 7e384e522a7842b9c55a6c8347df602a9db74ec6 Author: Alan Garny Date: Mon Sep 17 15:17:13 2012 +0200 Some work on the user documentation. commit 5413dee77e47b3ffea0e07baa94543b669f870e9 Author: Alan Garny Date: Fri Sep 14 17:19:34 2012 +0200 Show a context menu when right clicking the link of a resource or id, and allow its URL to be copied to the clipboard (closes #106). commit df9f21366215e8674cc9a1cd81f310d67eaa290e Author: Alan Garny Date: Fri Sep 14 16:18:21 2012 +0200 Minor refactoring. commit f5f32eb8ebb53278e472c1a0c7f4cb08bdbf2286 Author: Alan Garny Date: Fri Sep 14 15:36:57 2012 +0200 Minor refactoring. commit 0023ff3b3179cc2a65bbd42627a6d6ced0b95bd1 Author: Alan Garny Date: Fri Sep 14 13:33:52 2012 +0200 Show the URL of a resource or id as a tooltip (closes #106). commit 7f55d374f4a51ca430912e7c036600e5f011cde8 Author: Alan Garny Date: Thu Sep 13 17:45:25 2012 +0200 Some cleaning up of our CMake files. Also worked on getting things to finally work on Linux when it comes to the CellML API. commit ddba69c007d424bea0e5a69df3b592db690b1df1 Author: Alan Garny Date: Thu Sep 13 15:41:39 2012 +0200 Some work towards getting the Linux and OS X version of the CellML API binaries to work fine again. commit 51469ca237a1e51fd948a819aeb212600c279d9a Author: Alan Garny Date: Thu Sep 13 15:35:11 2012 +0200 Some minor cleaning up of main CMake file. commit d9d460795f70e38503dcddb8b83a2fd08a95e479 Author: Alan Garny Date: Thu Sep 13 13:43:24 2012 +0200 Upgraded the CellML API to the 12 September 2012 snapshot (Windows). commit f7b9916639e1e3e1b90cc9338e9b88811cc6a8cd Author: Alan Garny Date: Mon Sep 10 22:13:22 2012 +0200 Updated some HTML pages. commit 9d63630389fd7efde5a772d88e05ad8581ff6156 Author: Alan Garny Date: Mon Sep 10 22:05:38 2012 +0200 Updated the qualifier information page for the CellMLAnnotationView plugin (I had completely forgotten about it when updating the documentation). commit 0025a91e49fd33e03857aa88b4d96c344874629d Author: Alan Garny Date: Sun Sep 9 19:32:57 2012 +0200 Minor updates to the documentation. commit 7c244998a28fb3331bc559a467f13335ccc8f1d5 Author: Alan Garny Date: Sun Sep 9 19:29:52 2012 +0200 Slight update to the documentation. commit 1a4452fe9791e3003eb2fed4b8a27651010ea1cd Author: Alan Garny Date: Sun Sep 9 19:25:15 2012 +0200 Added a comment. commit 34ddd9d3a2d9c97a4093b88499bb350e330a86e5 Author: Alan Garny Date: Sun Sep 9 19:19:23 2012 +0200 Improved the handling of OpenCOR actions (using our own URL scheme/protocol) so that we don'\''t rely on starting a new instance of OpenCOR (using QProcess) passing the action to be performed as an argument. Indeed, it worked without noticeable side effect on Windows and Linux (well, Ubuntu at least), but on OS X we would have the application icon showing up for a second (as a result of starting a new instance of OpenCOR) which is not neat. The good thing about the new handling of OpenCOR actions is that it'\''s immediate (since no new instance of OpenCOR needs to be launched). commit 1aed128d179a6c01adc8005dca8ab451bc61cd74 Author: Alan Garny Date: Sun Sep 9 18:36:19 2012 +0200 Some minor fixes to get things to compile on OS X. Also minor improvement to the Plugins window. commit 5d1e32961e2da70acc3b60539f69cae5a682c932 Author: Alan Garny Date: Sun Sep 9 18:12:41 2012 +0200 Slight update to the user documentation. commit ff45846ee616974a970849e0a6e1f2ca112179ac Author: Alan Garny Date: Sun Sep 9 17:45:41 2012 +0200 Slight update to the user documentation. commit 06b39184acf2f3099c1b0dbb7a72278f41c927d8 Author: Alan Garny Date: Sat Sep 8 19:25:48 2012 +0200 Minor update to the user documentation. commit 9fa6f463e503f3626d5fadf76946423e955c1126 Author: Alan Garny Date: Sat Sep 8 19:23:12 2012 +0200 Can now ask OpenCOR to perform a given action (closes #105). commit 60b008055cb54492c4bf7c61413fa4fa0d0c8b1f Author: Alan Garny Date: Sat Sep 8 17:04:02 2012 +0200 Added a plugins section to the user documentation and made use of our own URL protocol/scheme to show the plugins dialog box (something which has to be supported by OpenCOR itself). commit 53bbc2afbea5fa68b2c79f1bc0389a2816837cc1 Author: Alan Garny Date: Sat Sep 8 03:36:29 2012 +0200 Minor improvement to the rendering of the menus in the documentation. commit 6a8f02947e0ca0d10aba52288ee2c54f7809801a Author: Alan Garny Date: Fri Sep 7 17:50:07 2012 +0200 Slight update to the user documentation. commit a546662b7fdbfefa3b49ef946bd1fff31ef044a7 Author: Alan Garny Date: Fri Sep 7 17:26:38 2012 +0200 Minor update to the user documentation. commit 7d93cb08d76ed465fed855e3c53f0684394e0e0c Author: Alan Garny Date: Fri Sep 7 17:22:59 2012 +0200 Reworked/updated both the user and developer documentations. Also started work on supporting the help to be dynamic (#105). commit 8912c42295a654b0dd669e00b7d4b60c0614764a Author: Alan Garny Date: Fri Sep 7 13:05:34 2012 +0200 Minor improvement to our JavaScript code for the documentation. commit d87803d8f483c14283d068c780b66ee2e1b4f0c6 Author: Alan Garny Date: Fri Sep 7 10:39:14 2012 +0200 Some more work on our documentation (we can now have menu separators and menu items linking to external resources). commit 683d3d599a30a647c38c1774ea34c3964035927a Author: Alan Garny Date: Thu Sep 6 19:12:34 2012 +0200 Minor refactoring of our JavaScript code used in the documentation. commit 9948fa23b3b1a9ef4d222f3b04b6773fa9ab058c Author: Alan Garny Date: Thu Sep 6 19:04:05 2012 +0200 Minor fix to the menu in the user documentation. commit d432d1d2e7ae04d52a91c9d9ee2853d83633caee Author: Alan Garny Date: Thu Sep 6 18:33:50 2012 +0200 Refactored some of our JavaScript code for the documentation. Also some minor improvements to the documentation. commit 6241342e095dd8366598ec01c106cc55c552dfe2 Author: Alan Garny Date: Thu Sep 6 16:34:14 2012 +0200 Minor update to the developer documentation. commit a5d5a41477b433ec0bb865dded9a829ba95e2e6c Author: Alan Garny Date: Thu Sep 6 16:25:40 2012 +0200 Some refactoring of our documentation. commit 5291af6cf5ba25bf1e67e081b5d9590de1e3c712 Author: Alan Garny Date: Thu Sep 6 16:00:24 2012 +0200 Some work on the user documentation: moved the dissemination section to its own page and made sure that the PDF and PPTX files can be opened from OpenCOR'\''s help plugin. Also some minor cleaning up. commit 4c13a57b380056cf8c60e1a46fc3c765b2a25460 Author: Alan Garny Date: Wed Sep 5 18:15:21 2012 +0200 Slight update to the developer documentation as a result of upgrading to the latest snapshot of the CellML API binaries. commit 7fe270e1041747ea8628bd3cc48f3494d5c2dee1 Author: Alan Garny Date: Wed Sep 5 17:56:37 2012 +0200 Some cleaning up as a result of upgrading to the latest snapshot of the CellML API binaries. Also fixed an issue with the validation of a CellML file (we were using a '\''continue'\'' instead of a '\''break'\''!). Also improved the error reporting the CellMLAnnotationView plugin. commit 18b888ef5d93f41823ee1f484497424e7ce1e33a Author: Alan Garny Date: Tue Sep 4 15:47:35 2012 +0200 Very minor cleaning up. commit 0449a352aaba794a1de60642932a3a50bae7ca1f Author: Alan Garny Date: Tue Sep 4 15:33:29 2012 +0200 Some cleaning up as a result of upgrading to the latest snapshot of the CellML API binaries. commit 0971cdcbfbf4eb56013b1c59b6b1c783a072d6d0 Author: Alan Garny Date: Tue Sep 4 14:19:07 2012 +0200 Upgraded to the CellML API binaries to the latest snapshot (29 August 2012). commit 2448e32ab1f4de56fa184d7bb4df0a1c8abf95b9 Author: Alan Garny Date: Tue Sep 4 11:24:57 2012 +0200 Some minor cleaning up. commit 5ad4fe23682aaff01a2ab6bbfccbeae7f0a4dbaa Author: Alan Garny Date: Mon Sep 3 19:16:11 2012 +0200 Upgraded jQuery from version 1.8.0 to version 1.8.1. Also some minor cleaning up. commit b0d214b3124ebccf1147774cb7705aca2ff66cbb Author: Alan Garny Date: Thu Aug 16 03:41:39 2012 +0200 Some minor updates to our various CSS files. commit 25a986819bbbffd129183a7d4e831d577072312c Author: Alan Garny Date: Thu Aug 16 03:35:45 2012 +0200 Some minor updates to our various CSS files. commit e60ff69ec85992f909335c851083e481a9b669e6 Author: Alan Garny Date: Thu Aug 16 03:28:18 2012 +0200 Some minor updates to our various CSS files. commit 5b881d475a804068d58e4fe2cadf2494d13b30eb Author: Alan Garny Date: Thu Aug 16 03:25:05 2012 +0200 Some minor updates to our various CSS files. commit 6a367b5ffda4f1ddf940bc9b285a0b281bf35c69 Author: Alan Garny Date: Thu Aug 16 03:21:41 2012 +0200 Oops, forgot to update the file structure in the developer documentation. commit 6a007043afe869e5a7823bf0748d8d8960b84f60 Author: Alan Garny Date: Thu Aug 16 03:15:59 2012 +0200 Some minor changes and cleaning up to our various CSS files. commit 860aa8974f2b2894504791de72651b9015a6069e Author: Alan Garny Date: Thu Aug 16 02:50:03 2012 +0200 Done with adding a jQuery/CSS based menu to both our user and developer documentation. commit 10b8756bca951560bced6c0aef7a9824ba7491ee Author: Alan Garny Date: Wed Aug 15 19:54:36 2012 +0200 Some more work on improving the documentation. commit f92da2a297fcf382562dbd981d118b03746b638e Author: Alan Garny Date: Wed Aug 15 19:50:38 2012 +0200 Some more work on improving the documentation. commit fff33f8e89883e21e17a8761e5547083cb222f79 Author: Alan Garny Date: Wed Aug 15 19:47:12 2012 +0200 Some more work on improving the documentation. commit bdb6d3c45277eebbd71da12e56a5fadffd927657 Author: Alan Garny Date: Wed Aug 15 19:21:04 2012 +0200 Some general improvements to the documentation. commit 6979c1b4385282b75f9d6bf41841941c11b37f44 Author: Alan Garny Date: Wed Aug 15 15:29:10 2012 +0200 Some work on the documentation. Started using some JavaScript. Also made sure everything is HTML5 compliant. commit b96fce0c3d89f9d251430ffaef94677121f743b5 Author: Alan Garny Date: Tue Aug 14 19:33:07 2012 +0200 Some minor improvements to the developer documentation. commit fd2863c1eb5ca99383b9f03b2e5e9faf8dde5cc0 Author: Alan Garny Date: Tue Aug 14 19:09:12 2012 +0200 Minor cleaning up to the user documentation. commit b5ba1a038094a17e246d56b13852b40172cd9a6c Author: Alan Garny Date: Tue Aug 14 19:07:45 2012 +0200 Went for the minimised version of Google Code Prettify. commit ce4f7791dcba1174fb53cbb1188e256f2ab33fde Author: Alan Garny Date: Tue Aug 14 15:22:15 2012 +0200 Some work on the user documentation. commit c4bdd7c8184366b3802739ec258ac4d4b35e8714 Author: Alan Garny Date: Tue Aug 14 14:51:34 2012 +0200 Was doing something important in a Q_ASSERT which obviously doesn'\''t get executed when in release mode... doh!! commit 7a207e1f4e29bb5d4b611483ed28ef9d7b690f4c Author: Alan Garny Date: Tue Aug 14 14:12:58 2012 +0200 Some minor cleaning up. commit dbe6a7871f3be6bbceceffabcaecdf111daaa011 Author: Alan Garny Date: Tue Aug 14 00:02:05 2012 +0200 Slight improvement to the saving of a file. commit c44498934bfc7d8144ab13810279f5dcf311469e Author: Alan Garny Date: Mon Aug 13 20:51:39 2012 +0200 Amended a comment. commit cb6082044b106c78f5cd2a3f6c77d7db83828450 Author: Alan Garny Date: Mon Aug 13 20:01:33 2012 +0200 Improved CellmlFileRdfTriples::add(). commit 54fbf1c2eb45ded52a98b17a7762f471915c9476 Author: Alan Garny Date: Mon Aug 13 19:36:52 2012 +0200 Some minor cleaning up (#57). commit 5473f1211e62c5c6a7d36b05a7c1de2b923c61c1 Author: Alan Garny Date: Mon Aug 13 18:45:23 2012 +0200 I believe we are now done with supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (closes #102). Also closes #90 (create a BioModels.Net annotation editing tool). commit 34177c7ea060ddfa2cceb2c84cda8be2919722a9 Author: Alan Garny Date: Mon Aug 13 16:59:11 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit f31dc8c22c062655d65c8534f85aed8208da327a Author: Alan Garny Date: Mon Aug 13 16:22:13 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit d265426634f0cb5feb9259ec33fbe2d5c9d76b03 Author: Alan Garny Date: Mon Aug 13 14:27:30 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 35eb4dd544ca3bdd999916a61ce51839e272137e Author: Alan Garny Date: Mon Aug 13 14:13:49 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). Now, RDF triples get removed from a CellML file upon saving it. commit af3a6bd2cded8c6686436e36576e0c4b99cba75f Author: Alan Garny Date: Mon Aug 13 11:57:46 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit bb90103780b71e2eb1ad94e342d5ebc2421d71e3 Author: Alan Garny Date: Mon Aug 13 11:47:57 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). Also some minor cleaning up (#57). commit ba862157a2bf868577f95c88cf0c1b6db5bc9369 Author: Alan Garny Date: Mon Aug 13 11:04:31 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). Also some minor cleaning up (#57). commit b35e38beb97f8f870ee63a67257db9d0bf40c3ce Author: Alan Garny Date: Mon Aug 13 09:54:38 2012 +0200 Some minor cleaning up (#57). commit 53e887b1597e78b9fb6f8c55ef5c831793297ac2 Author: Alan Garny Date: Mon Aug 13 09:53:17 2012 +0200 Some minor cleaning up (#57). commit 35bcab853e49e5ac4ebd3e61a0bd7f890532e0ca Author: Alan Garny Date: Sun Aug 12 14:29:02 2012 +0200 Some minor refactoring and cleaning up (#57). commit 538ecb68623d1fcd03cbfd41d833f260871845c3 Author: Alan Garny Date: Sun Aug 12 11:27:08 2012 +0200 Minor cleaning up (#57). commit fc3fa565314f11eed75eaa291dc904d5a41b30db Author: Alan Garny Date: Sat Aug 11 23:06:46 2012 +0200 Minor cleaning up (#57). commit 8aefda8a95b7dccda5f18505840ec0bce76889d0 Author: Alan Garny Date: Sat Aug 11 16:52:24 2012 +0200 Addressed a potential memory access issue with OpenCOR'\''s CellML-based classes, even though we have never experienced any problem so far. commit 0917b184eddb79712da32d39dbb8cfb951aea4dc Author: Alan Garny Date: Fri Aug 10 19:20:56 2012 +0200 Some minor cleaning up (#57). commit 484f35393e1198e1c91d2211bc7a92aefbdf9a25 Author: Alan Garny Date: Fri Aug 10 17:00:33 2012 +0200 Minor cleaning up (#57). commit edb11248c091be51314c4dbfce231171054db8b5 Author: Alan Garny Date: Fri Aug 10 16:47:25 2012 +0200 Some minor refactoring (#57). Also fixed something in the CellMLSupport plugin (there was something wrong with the generation of a unique cmeta:id; see CellmlFileElement::rdfTripleSubject()). commit 693ebe20086794475646545be5c103c2ab5c3e53 Author: Alan Garny Date: Fri Aug 10 10:44:21 2012 +0200 Some minor cleaning up (#57). commit 8a3a12e949acde396478e14ca0866f1568c820b6 Author: Alan Garny Date: Thu Aug 9 16:48:30 2012 +0200 Some minor cleaning up (#57). commit 05ab449946a22a3c0507c4c0f87b5912f2ce486c Author: Alan Garny Date: Thu Aug 9 16:43:08 2012 +0200 Some minor cleaning up (#57). commit 3becf39630d149eaa1d4bc811ea595c9d956b4f1 Author: Alan Garny Date: Thu Aug 9 15:26:10 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 9d50176e509c5d1ffc94c50f540f5944ecf40839 Author: Alan Garny Date: Thu Aug 9 12:54:19 2012 +0200 Some minor cleaning up (#57). commit c184b014362dd4db407982d4e00f4a3414162109 Author: Alan Garny Date: Thu Aug 9 11:21:24 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 202463312fdba8dce8fffdb81fd3d3dba6820d2d Author: Alan Garny Date: Thu Aug 9 10:24:48 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 7800c0a5468b866e45dbf64b8c64d28459841f08 Author: Alan Garny Date: Wed Aug 8 19:27:57 2012 +0200 Some minor refactoring (#57). commit 9af4c145fc3d83f4ac7a5f86875ac7ddb1823f81 Author: Alan Garny Date: Wed Aug 8 18:40:33 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 66128d72d7ae16d4330034ff3439548d5d26dc44 Author: Alan Garny Date: Wed Aug 8 18:19:03 2012 +0200 Handle the case where we try to open a recent file which doesn'\''t exist anymore. commit beb96a36e62bbc52b2a9a22d30dc52f1b314562f Author: Alan Garny Date: Wed Aug 8 18:03:15 2012 +0200 Some minor cleaning up (#57). commit 962025a6e5ec6db9b03957637f8c3ad642f0b616 Author: Alan Garny Date: Wed Aug 8 17:42:20 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 0f5c14f9c4dd98a3533f757b52af815eb3bd5a1a Author: Alan Garny Date: Wed Aug 8 17:34:48 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit d3057c06d27ca25a132f0f6eece8b48036853ae7 Author: Alan Garny Date: Wed Aug 8 16:16:26 2012 +0200 Minor update to the developer'\''s documentation. commit 51c92a400969f447fd829c08cd8b01d40b92b7f0 Author: Alan Garny Date: Wed Aug 8 14:22:31 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 26b7fc9f852baad8edff843778d169a9f0221972 Author: Alan Garny Date: Wed Aug 8 11:21:33 2012 +0200 Some minor cleaning up (#57). commit 856bc8b59ade0a822d6073c95695fc05be0f254e Author: Alan Garny Date: Wed Aug 8 11:05:32 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit eb434720f4e43b849a1669244bb26400c7276ba1 Author: Alan Garny Date: Tue Aug 7 18:05:05 2012 +0200 Some minor cleaning up (#57). commit ee3a3e7a3161403948e8104810d46b7bd45dbc4c Author: Alan Garny Date: Tue Aug 7 16:59:59 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 083201532722b2ce806bc2077049ffd49597a00e Author: Alan Garny Date: Tue Aug 7 13:39:14 2012 +0200 Minor updates to our developer documentation. commit d4c043af81fef86b8196f373388bf85cf3896960 Author: Alan Garny Date: Tue Aug 7 11:56:25 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit e96b52ea350c6f0a10b765a8f3ca29c99e9545e5 Author: Alan Garny Date: Mon Aug 6 20:35:37 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit e9aa50fdca9f2f9ce8f291d0bb63e0d649e9805e Author: Alan Garny Date: Mon Aug 6 20:20:11 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 7fad538b834ff32b8752cacdbff5d99761ff2ee2 Author: Alan Garny Date: Mon Aug 6 18:37:27 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 1e5af7f08b1b9c6c8e4caeb3b18ea3d0602de54c Author: Alan Garny Date: Mon Aug 6 18:26:38 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit 6102d70e3272903cdd8d2504e0e749ed722a7073 Author: Alan Garny Date: Mon Aug 6 17:34:14 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit fbf5219099672e513024043a7a726c9b7090e5fe Author: Alan Garny Date: Mon Aug 6 17:14:11 2012 +0200 Minor cleaning up (#57). commit c1a671db8f637c1dee8b23128f1313306d84b1ad Author: Alan Garny Date: Mon Aug 6 17:13:36 2012 +0200 Minor cleaning up (#57). commit ac3209349d6e3533559640492deaf7ede13c8872 Author: Alan Garny Date: Mon Aug 6 15:27:44 2012 +0200 Minor cleaning up (#57). commit 9054b59e5c5e51357aecad9e422ec05f3b6ec3a0 Author: Alan Garny Date: Mon Aug 6 14:20:09 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit acf0311f5d8275563fe62bd2a8315fddbafa181d Author: Alan Garny Date: Mon Aug 6 13:28:00 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit a2276a48c37e3223203e1ea260898f854403dcfd Author: Alan Garny Date: Mon Aug 6 13:05:23 2012 +0200 Ask views to specify which MIME type(s) they support. commit 29084b0c29820d90be26067bcab203f81042ecf6 Author: Alan Garny Date: Mon Aug 6 11:50:32 2012 +0200 Some minor improvement to our File interface. commit 18eece83d951ead732f68c4ef08b5f413371e83c Author: Alan Garny Date: Mon Aug 6 11:34:18 2012 +0200 Some minor cleaning up (#57). commit 1a1665e03c988473d683f594e3d9f66512508f70 Author: Alan Garny Date: Sun Aug 5 21:35:29 2012 +0200 Keep track of recently opened files (closes #104). commit 53ab41c3d71b353b7bc0523fc53810ce338a7d47 Author: Alan Garny Date: Fri Aug 3 19:05:40 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit f39e592bc036208fe59f80fbf5d9411507aae058 Author: Alan Garny Date: Fri Aug 3 18:57:19 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). Also some cleaning up and refactoring (#57). commit 29f002801fbcc4f71aa7078e7f9cb30ca0de2011 Author: Alan Garny Date: Fri Aug 3 13:57:29 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). Also some minor cleaning up and refactoring (#57). commit df8c50f29373abc8d21c08750a36f9460e68699e Author: Alan Garny Date: Fri Aug 3 09:46:29 2012 +0200 Finally came up with a '\''nice'\'' solution to our Qt Creator + CMake on OS X. commit a45eddbe56a47b677b6e6737b6ae9d09db15c881 Author: Alan Garny Date: Thu Aug 2 19:17:00 2012 +0200 Reverted something which is specific to running CMake from Qt Creator on OS X. Also made, once again, the MainWindow class a friend class of Interface and GuiInterface classes. It wasn'\''t necessary on Windows (and therefore using MSVC), but it is necessary on Linux and OS X. Also some minor cleaning up (#57). commit 5c0c34c62b3f8843f124493677e195598ee6a6d2 Author: Alan Garny Date: Thu Aug 2 16:43:01 2012 +0200 Some work on supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit b12a68dce69050799d2113c2c004bf9b13dc402b Author: Alan Garny Date: Thu Aug 2 16:14:36 2012 +0200 Working towards supporting the '\''saving'\'', '\''saving as'\'' and '\''saving all'\'' of files (#102). commit b65527eb932cea123d5e6020db43d55a80698bb0 Author: Alan Garny Date: Thu Aug 2 13:57:12 2012 +0200 Some cleaning up (#57). commit 7861aad3d5b811e1a2f86b1f5841f779df8f5736 Author: Alan Garny Date: Wed Aug 1 13:46:59 2012 +0200 Fixed a couple of issues with the viewing of metadata (#90). commit 06cead4ad3fb6eda8b24d005785d001581ce8c26 Author: Alan Garny Date: Tue Jul 31 18:17:05 2012 +0200 Minor refactoring (#57). commit 060ce38b063930100de9086df67675286335e2ef Author: Alan Garny Date: Tue Jul 31 17:20:27 2012 +0200 Various minor cleaning ups (e.g. removed unused windows) (#57). commit d7cfb6e1b2195e0b547ed97fd37347beb20d272d Author: Alan Garny Date: Tue Jul 31 16:50:26 2012 +0200 Removed our File|Print action which we don'\''t need for now. commit fbbb9fb17b720cc32b25bc90b7e450f8e6c9278f Author: Alan Garny Date: Tue Jul 31 15:52:29 2012 +0200 Working on the GUI side of things for saving a file. commit c2151ff1fc795c686ed4d61ac61ba97ab927679f Author: Alan Garny Date: Tue Jul 31 15:35:08 2012 +0200 Minor work on our central widget to change the tab text for a file whenever its modified status changes. commit bad3cd78228f6b74a53dc342311e4ace9ecc822c Author: Alan Garny Date: Tue Jul 31 14:11:05 2012 +0200 Working on allowing the direct addition of a metadata term (#90). commit ea45f5e62bd96391c74cdea0d45e2fa789e51d46 Author: Alan Garny Date: Mon Jul 30 16:20:29 2012 +0200 Minor update to our developer'\''s documentation. commit e3d60a269a4592a85b7ee4bebe07b0349149cb22 Author: Alan Garny Date: Mon Jul 30 11:53:14 2012 +0200 Minor update to our README.txt file. commit 08aadd839ea201e0c714a67ec25533b5940611c2 Author: Alan Garny Date: Mon Jul 30 11:51:57 2012 +0200 Minor update to our README.txt file. commit 3f27704f46edd01df5d8f998f54f20a893217cc5 Author: Alan Garny Date: Sun Jul 29 21:44:50 2012 +0200 Working on allowing the direct addition of a metadata term (#90). commit 21938b78b4c44cc2ffe4d033d2ddf34aa322ffd5 Author: Alan Garny Date: Sun Jul 29 19:09:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 97c96d4dc0bfae8f9a710efac6b7c39b06034743 Author: Alan Garny Date: Sat Jul 28 23:09:41 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit e43cf07e47d41778daa127b51b469151ceff84cc Author: Alan Garny Date: Sat Jul 28 22:28:29 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit f070aac519aec081276e2bda2fdd0d16b2fe5f9c Author: Alan Garny Date: Sat Jul 28 20:32:37 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit a5323adedd9fa386f44a7a6d26201cc9fa77a25d Author: Alan Garny Date: Sat Jul 28 20:22:01 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit ed9e1d382bcf4b006a9c552d7bde9e749d94d640 Author: Alan Garny Date: Sat Jul 28 19:12:31 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 340c409aaef70db2566277b0b64a55abc464241f Author: Alan Garny Date: Sat Jul 28 18:03:49 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 9b1cfcc5d5669e070a564cd96e0dd70318889074 Author: Alan Garny Date: Sat Jul 28 17:42:41 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 18ca012f5d04783809806856e526bc92ae024f43 Author: Alan Garny Date: Sat Jul 28 17:21:45 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 6f73b635797ff4455bf260f6d8be66cc53a691b8 Author: Alan Garny Date: Sat Jul 28 12:45:03 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 3f198083fa4426c4cc524da434fc7f20c1cd167b Author: Alan Garny Date: Fri Jul 27 19:00:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 9dd02f681c35de097726a115e521869879b10410 Author: Alan Garny Date: Fri Jul 27 18:39:50 2012 +0200 Reverted something in our main CMake file (which we thought would help with the upgrade to OS X 10.8 and Xcode 4.4), but this was causing other problems while not solving any, so... commit 8fff64f5fd3994dc788bf749ce4e43a697f2ca54 Author: Alan Garny Date: Fri Jul 27 17:18:07 2012 +0200 Minor update to the developer documentation as a result of upgrading to Xcode 4.4. commit 9bbd6e0313c89faf63d3032a1c2dd7652ee26d56 Author: Alan Garny Date: Fri Jul 27 16:41:13 2012 +0200 Minor update to the developer documentation as a result of upgrading to Xcode 4.4. commit d0885254072d7b548e4c03196ac23cad34c56d1b Author: Alan Garny Date: Fri Jul 27 16:16:15 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit fc819faeb470874b1b2ea0198b2dff747b13337a Author: Alan Garny Date: Fri Jul 27 16:05:09 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 0134c7b8a9e4eb30ae996570ed1a88e796cedb7f Author: Alan Garny Date: Fri Jul 27 11:51:22 2012 +0200 Some minor cleaning up (#57). commit 28ddb7a14ac2fa7442dcd79e9eb4c7e0d24f7cfe Author: Alan Garny Date: Thu Jul 26 17:04:12 2012 +0200 Some minor cleaning up (#57). Also update our LLVM plugin binary on Mac OS X (using install_name_tool), but OpenCOR still doesn'\''t work, so I am wondering whether LLVM doesn'\''t have to be rebuilt following our upgrade to Xcode 4.4. commit fa9142d8c008a22a3da769499193f79e12d5bd63 Author: Alan Garny Date: Thu Jul 26 16:31:17 2012 +0200 Some minor comments. commit 3085b9929ba6701dc0d69c121f94790e5c974c18 Author: Alan Garny Date: Thu Jul 26 15:58:34 2012 +0200 Xcode now uses LLVM instead of gcc, and well LLVM is more rigorous (and nicer, faster, etc. too to be honest!), so... commit dccc811ca44e6342f1ad274a6c648bbfb79c0c23 Author: Alan Garny Date: Thu Jul 26 14:47:43 2012 +0200 Minor fix in the current year for our copyright information. commit 24a048656ec674cbcf533afdf8ec220a74203ff8 Author: Alan Garny Date: Thu Jul 26 14:41:25 2012 +0200 Some OS X 10.8 (Mountain Lion) specific stuff. commit 4bd3b7b1bf111b993eaeb15ed88cfb4c53062f17 Author: Alan Garny Date: Thu Jul 26 13:48:39 2012 +0200 Slight improvement to our common.cmake file. commit 460e58f92f502914020935fae4bc75555826a149 Author: Alan Garny Date: Thu Jul 26 13:11:46 2012 +0200 Some refactoring/renaming/etc. to account for the fact that Mac OS X is now known as OS X, and that OS X 10.8 (Mountain Lion) doesn'\''t use /Developer anymore. commit fb6c30bee396e251fb91ea68ff6a55abbcb1c35b Author: Alan Garny Date: Wed Jul 25 20:42:02 2012 +0200 Upgraded to XCode 4.4, so updated the developer'\''s documentation. commit a96ebaff3de7e2bfc6ecc2f5cd7f105f57523ba5 Author: Alan Garny Date: Wed Jul 25 20:08:22 2012 +0200 Some minor cleaning up (#57). commit 3624dbc0a0633ca90f8c3d1d7e83dc4ba4e6bbbd Author: Alan Garny Date: Wed Jul 25 17:51:40 2012 +0200 Some cleaning up in our various CMake files (#57). commit 2d5d71c4e049b223e3a4412aa3490f4801c98cd7 Author: Alan Garny Date: Wed Jul 25 17:27:59 2012 +0200 Some cleaning up in our various CMake files (#57). commit b36a2cd52e1fcbd5bd4ec52fd9899a329231da61 Author: Alan Garny Date: Wed Jul 25 13:32:53 2012 +0200 Added '\''support'\'' for OS X 10.8 (Mountain Lion) and cleaned a few things up in the process (#57). commit e2fb060e8fcceef6383c865e81ea7df284c6b486 Author: Alan Garny Date: Tue Jul 24 19:08:51 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit bae67c96a87c36855bd3ccf5456fae22e55eaa46 Author: Alan Garny Date: Tue Jul 24 17:32:55 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 89dae434615d0fdffec4ffbfe4b28e92fb1cc5b5 Author: Alan Garny Date: Tue Jul 24 16:18:26 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 5de993ca9e064b64761c06ff4675497c45d28725 Author: Alan Garny Date: Tue Jul 24 15:50:14 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit a491079a7fab80ec0fb206244b949036190f7a81 Author: Alan Garny Date: Tue Jul 24 15:32:27 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit bd30ed86dfb2ab7c02b5d1fb3b7dff1ad5e96c80 Author: Alan Garny Date: Tue Jul 24 15:14:19 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit 2504f12b6bd4e23586353589f4c8c795066d6ef4 Author: Alan Garny Date: Tue Jul 24 11:07:20 2012 +0200 Some minor refactoring (#57). commit c2b6d6ed8a3c3d7788ebd0bb15bc34a3f380a682 Author: Alan Garny Date: Mon Jul 23 18:40:40 2012 +0200 Minor improvement to our computer engine class. commit 846aebe11e4615fa1c7480a77352307f2bf10d9d Author: Alan Garny Date: Mon Jul 23 17:42:31 2012 +0200 Should now be able to build OpenCOR with the binary version of LLVM+Clang (at least, it works on Windows). Also some minor cleaning up (#57). commit 2100dc3d6078ae50f6e1c3bd9cb83156b52d33f7 Author: Alan Garny Date: Mon Jul 23 16:18:10 2012 +0200 Minor fix as part of our LLVM+Clang work. commit f9d9efb99ed1ae513e6d9b3fbe3196b0e7827d7e Author: Alan Garny Date: Mon Jul 23 14:39:25 2012 +0200 Some minor updates for LLVM+Clang. commit 41d169c55aa065fb18d61555115a0fcae4847430 Author: Alan Garny Date: Mon Jul 23 14:08:32 2012 +0200 Minor update for LLVM+Clang. commit 7fea1c1c3bdf67c8b3426482d3973169e6a18bc5 Author: Alan Garny Date: Mon Jul 23 13:56:18 2012 +0200 Minor update for LLVM+Clang. commit 3ad89a396a224f43f51c2f05df3dc3d3f2662d5a Author: Alan Garny Date: Sun Jul 22 20:27:15 2012 +0200 Minor editing of a comment. commit 6b391fd946d6baf075929513c217bfa04e982d2e Merge: 8f1a720d1 270782ece Author: Alan Garny Date: Sun Jul 22 18:50:53 2012 +0200 Merge branch '\''Clang'\''. commit 270782ece6ee910f91a0ec8060a5c907c46bed64 Author: Alan Garny Date: Sun Jul 22 18:12:31 2012 +0200 Some minor cleaning up. commit bfba8a1caedba367a01b4072d994c995c08e165c Author: Alan Garny Date: Sun Jul 22 16:50:14 2012 +0200 Some minor cleaning up. commit cbc03e607759447a9cf35868351c61e84081efcf Author: Alan Garny Date: Sun Jul 22 16:41:36 2012 +0200 Some minor cleaning up. commit 8c945130707ba0f7571797c4a2739f1a9a531b4d Author: Alan Garny Date: Sun Jul 22 15:41:59 2012 +0200 Some minor cleaning up. commit c7279f1ed02f08e0ec89f421ebcde4f73e529253 Author: Alan Garny Date: Sun Jul 22 15:26:54 2012 +0200 Done with getting LLVM+Clang to generate binary code from some C code. Just need to do a lot of cleaning up now and then get the binaries for all three platforms. commit 936ed6ee59730616cebd6cf36f523f10dbf7e5d3 Author: Alan Garny Date: Fri Jul 20 19:48:58 2012 +0200 Some merging from our master branch. commit 8f1a720d15c85515b24201ad0710a271adfc1a07 Author: Alan Garny Date: Fri Jul 20 18:47:19 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit e6255f3c3d1e509c846b12bb0e3e6a9d5db065cb Author: Alan Garny Date: Fri Jul 20 17:55:49 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit ce2275632c6d53c47259a7198346925e6ebdcfe2 Author: Alan Garny Date: Fri Jul 20 16:33:16 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit c7d298a11316a52301a1e3d366215b54b9a4123e Author: Alan Garny Date: Fri Jul 20 16:18:26 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit beba9ccbb3620ebfc3cdcd21c41b0861617f3ffc Author: Alan Garny Date: Fri Jul 20 15:44:08 2012 +0200 Minor GUI improvement to allow a file to be dropped on our web view (#101). commit de0faaea020d31c6f376b0b1aad8a4513269ed8d Author: Alan Garny Date: Fri Jul 20 15:37:31 2012 +0200 Fixed a small GUI issue related to tab order (#78). Some minor cleaning up (#57). commit 2861660a8a11f97f68b683dbff44113bd05d1187 Author: Alan Garny Date: Thu Jul 19 20:02:38 2012 +0200 Fixed a small GUI issue related to switching from one file to another. commit 2022a5e72c185aaedffa4b3e380d9ff35f637a8e Author: Alan Garny Date: Thu Jul 19 19:03:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values (#101). commit d4d7a164f502562c128ea9bf2b25a13f0aa437d7 Author: Alan Garny Date: Thu Jul 19 18:46:44 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit 14c01d71f75ffdcaa3907692f8470a184d7bf254 Author: Alan Garny Date: Thu Jul 19 18:38:45 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit 847ff639de6bd7d990d4061ebe316369d502ddc4 Author: Alan Garny Date: Thu Jul 19 18:24:55 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit ca5b54be3ab4a3a8d7f30bb6bc48704752e45d35 Author: Alan Garny Date: Thu Jul 19 17:59:12 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit 680690a997997884222441077a5f4b6621a41472 Author: Alan Garny Date: Thu Jul 19 17:48:23 2012 +0200 Minor general GUI update. commit dfb5e394e09e2981461aceadca29c88d570e3529 Author: Alan Garny Date: Thu Jul 19 17:39:01 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit 234f7950e0c28823ca96aaf4a20a476620b53b7c Author: Alan Garny Date: Thu Jul 19 17:29:33 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit 676828274236e91b82b463ef0fdeca89672a62aa Author: Alan Garny Date: Thu Jul 19 17:03:26 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values (#101). commit e3d3bf4c669abd8c0c38b725fc9b7b6f7ac4b31d Author: Alan Garny Date: Thu Jul 19 15:05:48 2012 +0200 Minor issue related to #100. commit 9988e9fa366a4e930e6934e47d441e0d76435e7b Author: Alan Garny Date: Thu Jul 19 14:46:06 2012 +0200 Minor issue related to #100. commit 55c6e6ee5b8df763af4e02b555e4ff9ae9f66a43 Author: Alan Garny Date: Thu Jul 19 10:33:08 2012 +0200 We used to show all the variables while we should have only shown the variables that are defined in the current component (#78 and #90). commit f006e131bc46f4d98b58640a0012a36cfa368238 Author: Alan Garny Date: Thu Jul 19 08:10:45 2012 +0200 Some merging from our master branch. commit 3a4462a5d6ccf3e1859f2231eb67b8d627d9814c Author: Alan Garny Date: Wed Jul 18 18:11:45 2012 +0200 Some minor cleaning up (#57). commit f8e9e6efa5a5544884727fb570bf353ffee5144b Author: Alan Garny Date: Wed Jul 18 18:07:22 2012 +0200 Some minor cleaning up (#57). commit be4bf5d654470415ed9485d8a53e501f4367341e Author: Alan Garny Date: Wed Jul 18 15:17:12 2012 +0200 Some minor cleaning up (#57). commit bf4f481625dbe4bb757cf7aa3562ab5d45780c77 Author: Alan Garny Date: Wed Jul 18 14:19:13 2012 +0200 Some minor cleaning up (#57). commit a5b46a52c7fe091e3048a67843a70e6b873ed195 Author: Alan Garny Date: Wed Jul 18 14:17:24 2012 +0200 Some work on our CellML Annotation view plugin (#78). Also some minor cleaning up (#57). commit a0d7a20e90839a65398e4461f0dcac8d74e1eb05 Author: Alan Garny Date: Wed Jul 18 12:42:40 2012 +0200 Closes issue #100 regarding some missing files in the Windows package. I am not sure whether this was due to our switch to MSVC or not, but at least now it works fine... commit 1521782a43571de7cc03516920a0edd65f7095f2 Author: Alan Garny Date: Wed Jul 18 11:15:15 2012 +0200 Closes issue #99 (about distinguishing package names on Linux). commit f1018a4fa130d57ee0eab470f73fdadd03cc4b2c Author: Alan Garny Date: Tue Jul 17 20:17:00 2012 +0200 Addressed a small regression issue with CMake 2.8.8 (see http://cmake.3232098.n2.nabble.com/Problems-with-CPack-2-8-8-td7580729.html). commit 64030fee325cf8b1f838f62713aa1bebe5a17743 Author: Alan Garny Date: Tue Jul 17 20:11:56 2012 +0200 Overlooked a compiler issue. commit cb42aed2436a1ab9100299524df59671364c5112 Author: Alan Garny Date: Tue Jul 17 19:40:05 2012 +0200 Some work on our CellML Annotation view plugin (#78). commit 8e6482af9457447e9938d6b445360d0e13ae6e48 Author: Alan Garny Date: Tue Jul 17 19:01:58 2012 +0200 Some work on our CellML Annotation view plugin (#78). commit 1135d0315c628cbad3bfdb04256123df90a926de Author: Alan Garny Date: Tue Jul 17 18:58:54 2012 +0200 Some work on our CellML Annotation view plugin (#78). commit 287cf217a7f752d13a851b4d031728461fc5169d Author: Alan Garny Date: Tue Jul 17 18:13:12 2012 +0200 Pretty much done with adding RDF triples (#78 and #90). Also some minor cleaning up (#57). commit 63bfb79f7796b54795764af1f8093579dfa4c9eb Author: Alan Garny Date: Tue Jul 17 14:35:54 2012 +0200 Some minor cleaning up (#57). commit 8897cc6eaf26afaf924979254413185abed68e17 Author: Alan Garny Date: Tue Jul 17 14:30:10 2012 +0200 Some cleaning up and minor refactoring (#57). commit 0e01e912501a7f70e6102e63ce2857f9497359ab Author: Alan Garny Date: Tue Jul 17 10:49:31 2012 +0200 Some minor cleaning up (#57). commit bcad7240b26f0a38123848b9369d11d782e9f63b Author: Alan Garny Date: Mon Jul 16 20:30:04 2012 +0200 Some minor cleaning up (#57). commit 4d3852796f3a30b0be950af5aa8bb39937510679 Author: Alan Garny Date: Mon Jul 16 20:23:27 2012 +0200 Some work on the addition of RDF triples (#90). Also some minor cleaning up (#57). commit 7d0eaa5d075d97c64041e1f8522e840131251f10 Author: Alan Garny Date: Mon Jul 16 20:18:06 2012 +0200 Some work on the addition of RDF triples (#90). Also some minor cleaning up (#57). commit 3dc9f1efdbf450c23801b90aabdd41f569b4af39 Author: Alan Garny Date: Mon Jul 16 19:39:12 2012 +0200 Some work on the addition of RDF triples (#90). Also some minor cleaning up (#57). commit 9ea27992d50ccef4510c1a1120e863739d3f354f Author: Alan Garny Date: Mon Jul 16 16:57:19 2012 +0200 Some work on the addition of RDF triples (#90). Also some minor cleaning up (#57). commit 9449208c88a66ffdf9d8789d3e02f09f8ac9da32 Author: Alan Garny Date: Mon Jul 16 14:24:31 2012 +0200 Some work on the addition of RDF triples (#90). Also some minor cleaning up (#57). commit 4929bef33f62fb8361abb05da6c25c4af42a6872 Author: Alan Garny Date: Sat Jul 14 13:24:34 2012 +0200 Some merging from our master branch. commit 4a8ea2a312971e896a2eaefe8480dfa3f87a32c6 Author: Alan Garny Date: Sat Jul 14 13:22:26 2012 +0200 Some minor cleaning up (#57). commit abf012b37ea9ac6680d1bc6b9e5241f9b7f17b52 Author: Alan Garny Date: Sat Jul 14 11:55:51 2012 +0200 Some minor cleaning up (#57). commit 30cb7d19e79f79c21f9b40da5b1398b3d129416a Author: Alan Garny Date: Sat Jul 14 09:51:25 2012 +0200 Some work on the addition of RDF triples (#90). commit 9e83ef8d60d154d731b14f409f1578b0ce6fea75 Author: Alan Garny Date: Sat Jul 14 00:56:36 2012 +0200 Some merging from our master branch. commit 43669ceb106a4191e11075583015827383f286e8 Author: Alan Garny Date: Sat Jul 14 00:55:20 2012 +0200 Some work on the addition of RDF triples (#90). commit 6ecccf1c02f8a987c002ff703f3ec7bac6c39317 Author: Alan Garny Date: Fri Jul 13 20:24:19 2012 +0200 Some merging from our master branch. commit 3c7237f799d44431412832a5372523d87e6980ea Author: Alan Garny Date: Fri Jul 13 19:45:53 2012 +0200 Some work on the addition of RDF triples (#90). commit 0a956f083f8171798ca8bfd02ae7cfa3cee879ec Author: Alan Garny Date: Fri Jul 13 18:24:02 2012 +0200 Some work on the addition of RDF triples (#90). commit 054baa755ce0ecd09bed48d6bc80de5cdbc9cde6 Author: Alan Garny Date: Fri Jul 13 18:02:42 2012 +0200 Some work on the addition of RDF triples (#90). commit 0757e853878347cd4ae7d0c176f2701158882337 Author: Alan Garny Date: Fri Jul 13 17:43:33 2012 +0200 Some work on the addition of RDF triples (#90). commit a2e217759b8e06caa3e31f1526214b3ac0c63a72 Author: Alan Garny Date: Fri Jul 13 17:39:28 2012 +0200 Some work on the addition of RDF triples (#90). commit 16c0ca4109392d76dc42d24bea83abcda89a8f67 Author: Alan Garny Date: Fri Jul 13 17:39:04 2012 +0200 Some work on the addition of RDF triples (#90). commit 2124a47cbf4e7e7d48a45e9f04fe0da5bf332b60 Author: Alan Garny Date: Fri Jul 13 17:21:23 2012 +0200 Some work on the addition of RDF triples (#90). commit e1a349925994b9e845d2d7f8148e30c981ed5d65 Author: Alan Garny Date: Fri Jul 13 15:01:23 2012 +0200 Some work on the addition of RDF triples (#90). commit 391955b2aebc38e4e6c0f042cea4790da77968a3 Author: Alan Garny Date: Fri Jul 13 13:30:27 2012 +0200 Some work on the addition of RDF triples (#90). commit c6ec177e58bdf1f546779d7d477eb2511fe3eaab Author: Alan Garny Date: Fri Jul 13 13:12:30 2012 +0200 Some work on the addition of RDF triples (#90). commit 701bc9f4289bfd193573b884d2b15802ce88a652 Author: Alan Garny Date: Fri Jul 13 11:43:08 2012 +0200 Removed the last flickering issue we had on Mac OS X (#78). commit af7c1924f7238d75f6a7e860816ba6bdc2394ca7 Author: Alan Garny Date: Fri Jul 13 11:40:09 2012 +0200 Some minor cleaning up (#57). commit 089f0592a8847edd7cc106d119c423535635db20 Author: Alan Garny Date: Fri Jul 13 10:42:36 2012 +0200 Minor update to avoid a warning with some compilers. commit a348af8f52649e8a4bbcb6b3e3f05e50fdae433d Author: Alan Garny Date: Fri Jul 13 10:18:46 2012 +0200 Re-ordered the qualifier and term fields (#90). Also some minor cleaning up (#57). commit 250fade63a17613907a0242f61c009626d1a1ef9 Author: Alan Garny Date: Thu Jul 12 19:50:22 2012 +0200 Some merging from our master branch. commit b837aba109e9cd7383a23da81b51574e2d7fd959 Author: Alan Garny Date: Thu Jul 12 19:11:34 2012 +0200 Improved our showing of the cmeta:id value in our CellML element view (#78) commit 0c5e153779aa79f8635871ed5278dc214927de81 Author: Alan Garny Date: Thu Jul 12 17:01:23 2012 +0200 Keep track of splitter move in the CellML metadata widget (#78). commit e49738df422ca721044373207b3f7ec2756f0737 Author: Alan Garny Date: Thu Jul 12 16:31:46 2012 +0200 Added an unsupported message for unrecognised metadata in the CellML element view (#78). Also some minor cleaning up (#57). commit aa72c49b3632651b530287ed62a5a43ed5f65143 Author: Alan Garny Date: Thu Jul 12 15:47:59 2012 +0200 Some cleaning up (#57). commit c357ab70c86477831127279ee27aa9782c519216 Author: Alan Garny Date: Thu Jul 12 15:12:53 2012 +0200 Some minor refactoring (#57). commit e05dfd6ddf2be2cbff5ab488fd885bfd3933bb53 Author: Alan Garny Date: Thu Jul 12 15:03:28 2012 +0200 Some refactoring (#57). commit 839f8b0e6f4bee4c4bf51309f2084a2bf7281e6d Author: Alan Garny Date: Thu Jul 12 14:44:41 2012 +0200 Some cleaning up (#57). commit bdad8c58fd39cb9919b726de7a53a527bdad4198 Author: Alan Garny Date: Thu Jul 12 14:27:25 2012 +0200 Some more refactoring (#57). commit e612c944a26d0465260277edbc4ef9baa5fa0c44 Author: Alan Garny Date: Thu Jul 12 13:41:10 2012 +0200 Some more refactoring (#57). commit e3908ffa7c3b923c4cd299dd59cd87ab48bd55f6 Author: Alan Garny Date: Thu Jul 12 13:33:11 2012 +0200 Some more refactoring (#57). commit 82fd8baddc0a4d7ff799d8a7c889bd7d243f7f3c Author: Alan Garny Date: Thu Jul 12 13:13:28 2012 +0200 Quite a bit of refactoring (#57). commit 7113a370c4f002430a22bc28847d8f1f42faac37 Author: Alan Garny Date: Thu Jul 12 11:43:26 2012 +0200 Some minor refactoring (#57). commit 49c7280289d65458d9fcdac526c85a125713ec51 Author: Alan Garny Date: Thu Jul 12 11:32:25 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit 209d17f3fe71ac2f763aaaaa43b30215212c777e Author: Alan Garny Date: Thu Jul 12 11:17:32 2012 +0200 Some minor cleaning up (#57). commit 980e77253112d4aed49fb8dbf96adb737cdb1e28 Author: Alan Garny Date: Thu Jul 12 10:57:47 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit eb6764d77b915c31e1093d21bb28e92281294d48 Author: Alan Garny Date: Thu Jul 12 10:40:44 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit d82b2d4e65b26c4a8238c1d27bead6820822d514 Author: Alan Garny Date: Wed Jul 11 19:25:46 2012 +0200 Worked some more on the CellML element aspect of our CellML Annotation view plugin (#78). commit 2f1309fae214b720f31a5d7c8f17b17f19157d28 Author: Alan Garny Date: Wed Jul 11 18:31:17 2012 +0200 Fixed an issue with our web viewer in the CellML side of our CellML Annotation view plugin (#78). commit c89d35d215df7f462d428e56f2b868ebfd66911e Author: Alan Garny Date: Wed Jul 11 18:17:04 2012 +0200 Some refactoring (#57). commit f59584670eab4223e3ae5db5c0c74a4227f00af8 Author: Alan Garny Date: Wed Jul 11 17:33:34 2012 +0200 Some minor cleaning up (#57). commit 4fbcc3cded388c87ecdac6a80b90245b88f4c33d Author: Alan Garny Date: Wed Jul 11 17:23:14 2012 +0200 Starting some '\''heavy'\'' refactoring of the CellML Annotation view plugin GUI when it comes to the CellML element details view side of things (#57 and #78). commit f31d38052484304bd3233d6e9ed581ca6faff332 Author: Alan Garny Date: Wed Jul 11 15:09:36 2012 +0200 Was missing some possible ontological terms. commit 59e09f11b2ecdfdc26d75504a0c78c2f25121fb4 Author: Alan Garny Date: Wed Jul 11 15:05:02 2012 +0200 Can now efficently retrieve possible ontological terms based on a term given by the user. Just need to work on the GUI side of things now... commit 85afdc5e4c63bbcc5679bb3aa9bf6646f887e40d Author: Alan Garny Date: Wed Jul 11 14:43:03 2012 +0200 Some minor cleaning up (#57). commit 7961354c21a4f5b59a3c615992f87d1463f98ace Author: Alan Garny Date: Tue Jul 10 18:50:11 2012 +0200 Some more work on our CellML Annotation view plugin (#78). commit 2d9b54ecb41f03e75011fc50e89399c065f46e27 Author: Alan Garny Date: Tue Jul 10 18:05:43 2012 +0200 Some more work on the addition of RDF triples (#78 and #90). commit ff44b88a2db0dfe9656660309ce4703e0bc3cd85 Author: Alan Garny Date: Tue Jul 10 18:03:43 2012 +0200 Some more work on the addition of RDF triples (#78 and #90). commit 47ccf5ebbb99a42a35ec5a9e85a8feef662ecf10 Author: Alan Garny Date: Tue Jul 10 17:35:31 2012 +0200 Some more work on the addition of RDF triples (#78 and #90). Some minor cleaning up (#57). commit 8838793f963411854883608a7aa7327140e77bb8 Author: Alan Garny Date: Tue Jul 10 10:50:33 2012 +0200 Some more work on the addition of RDF triples (#78 and #90). Some minor cleaning up (#57). commit dbffd519b7397b28e1ee4a3a879855529ffc57ae Author: Alan Garny Date: Mon Jul 9 14:56:53 2012 +0200 Some more work on the addition of RDF triples (#78 and #90). Some minor cleaning up (#57). commit 15e907fcf63035eb68d80fbf7e2d8f6a8c1a3534 Author: Alan Garny Date: Mon Jul 9 13:54:18 2012 +0200 Started work on the addition of RDF triples (#78 and #90). Some minor cleaning up (#57). commit 3241c3475d9cd887f856a6f5e5993611ce8b7ec2 Author: Alan Garny Date: Mon Jul 9 11:23:02 2012 +0200 Minor GUI improvement to our displaying of RDF triples information (#78). commit c1322d76fd36338878305d10c3eb8bc4690fef7c Author: Alan Garny Date: Mon Jul 9 09:44:06 2012 +0200 Minor updates to the developer documentation. commit b458fe636c3cc2251a3746a567c3d5468ffe19f1 Author: Alan Garny Date: Sun Jul 8 16:54:26 2012 +0200 Previously committed files which were still being worked on, so... reverting them... commit 98255e19cbb3970f34f8b656c542fc121458796e Author: Alan Garny Date: Sun Jul 8 16:20:04 2012 +0200 Some merging from our master branch. commit 7e4591bd602c23bfd2fe681b7f82c67046ba7f14 Author: Alan Garny Date: Sun Jul 8 16:13:18 2012 +0200 Addressed a flickering issue on Mac OS X (#78). See http://www.qtcentre.org/threads/49840-Awful-flickering-with-QGridLayout-on-Mac-OS-X. commit 22edf137ea9372626f330c4ff79e2c3c9526f9ad Author: Alan Garny Date: Sun Jul 8 14:25:31 2012 +0200 Fixed another issue related to our web view in the CellML Annotation view plugin (#78). We hadn'\''t accounted for the fact that a biomodels.net URL redirects to another URL... commit acf0082c1617fedeefa55b7feb7311ba82407ced Author: Alan Garny Date: Sun Jul 8 13:53:52 2012 +0200 Qt keeps updating this translation file, so... commit 0e07f55163de729c923bb4134b5d7227fafe8c00 Author: Alan Garny Date: Sun Jul 8 12:53:23 2012 +0200 Improved the updating of our web view in the CellML Annotation view plugin (#78). commit f1608772ab5385948d14a41435395eae97741e82 Author: Alan Garny Date: Sun Jul 8 02:29:39 2012 +0200 Some merging from our master branch. commit ebb375ea0fd7dcb63aab7f4fb7551f8511dcab1a Author: Alan Garny Date: Sun Jul 8 02:26:36 2012 +0200 Minor editing (#57). commit 7a4ca9016f07b0f47157510219243461399d4d00 Author: Alan Garny Date: Sun Jul 8 02:16:12 2012 +0200 Kind of done with renaming a metadata id (#78). We '\''just'\'' to find out how to actually update the CellML file itself. See https://tracker.physiomeproject.org/show_bug.cgi?id=3319. commit cbae47c96df195134f5419bc44cc1b4817635189 Author: Alan Garny Date: Sat Jul 7 21:23:19 2012 +0200 Some minor refactoring (#57). commit b846b31941867cf60d0d4e7b4e36134b593286c3 Author: Alan Garny Date: Sat Jul 7 19:26:54 2012 +0200 Some minor refactoring (#57). commit 552450ead126f181a71569c5b1bbe6b2925126de Author: Alan Garny Date: Sat Jul 7 19:16:13 2012 +0200 Some cleaning up and minor refactoring (#57), as well as some work on the renaming of some metadata'\''s id (#78). commit 9a53cbeeee68bf58b9d52e18f94607dc1f26026f Author: Alan Garny Date: Sat Jul 7 18:59:22 2012 +0200 Some cleaning up and minor refactoring (#57), as well as fixed a small GUI issue with regards to the looking up of some RDF triple information (for some reason, a recent commit cleaned up our web viewer after updating the GUI?!...). Also started work on the renaming of some metadata'\''s id. commit 9283745fcbf0f1a264f7ee790fd312bc344ed111 Author: Alan Garny Date: Fri Jul 6 15:02:09 2012 +0200 Fixed a flickering issue on Mac OS X. commit bb8585274b23964458ca212a45f64a48fd9a3456 Author: Alan Garny Date: Fri Jul 6 12:57:01 2012 +0200 Replaced our use of setVisible() with setUpdatesEnabled(). Indeed, we originally preferred setVisible() to setUpdatesEnabled() because of the latter not preventing flickering on Mac OS X, but it happens that some of our updates generate some flickering using setVisible(), and this on all platforms, while setUpdatesEnabled() doesn'\''t (except on Mac OS X, meaning that there is probably not much we can do about it), so... commit 00c0e6460c956f5c987ff9762d6e7efd78183483 Author: Alan Garny Date: Thu Jul 5 19:32:55 2012 +0200 Minor editing. commit 69a0690a621ea9ef9511477b10378c17c538e89c Author: Alan Garny Date: Thu Jul 5 19:30:42 2012 +0200 Replaced some QToolButtons by some QPushButtons which is what we wanted to use in the first place, but were facing an issue with assigning a QAction to them. Well, we still have the issue, so we assigned some properties '\''manually'\'' since a QToolButton doesn'\''t look the same as QPushButton on some platforms. commit e34b7a906f681d3cd22fcaa7cac783ddf0cbc12a Author: Alan Garny Date: Thu Jul 5 18:59:47 2012 +0200 Added a button to our CellML element details view (#78) to switch to the editing mode of the metadata associated to the the CellML element'\''s cmeta:id. Some work on the renaming of a metadata'\''s id, but still need to update the corresponding CellML file. commit fa1c21f3e9368e7ead9b138610a573d531da2cb7 Author: Alan Garny Date: Thu Jul 5 13:58:59 2012 +0200 Added some comments and started work on the addition of RDF triples (#78). commit cbe2e73a1c56ab3ea84953d95290c5332213f997 Author: Alan Garny Date: Thu Jul 5 11:20:15 2012 +0200 Have the BioModels.Net view widget let people know if a RDF triple has been removed (#78). commit 1a019ab1cb4d91d0aadcf08d49bd9d2bd3f386bd Author: Alan Garny Date: Thu Jul 5 10:46:30 2012 +0200 Some minor cleaning up (#57). commit 789b4af97ba88391d8f0d0acb4431046539dd766 Author: Alan Garny Date: Wed Jul 4 17:49:40 2012 +0200 Started work on supporting the addition of RDF triples in our CellML Annotation view plugin (#78). This has involved creating a new widget for it, as well as supporting the move of the splitter which embeds that new widget, a metadata view widget and a QWebView widget. commit 89a360d1363ed92baf5ac973186ecddf45d0154f Author: Alan Garny Date: Wed Jul 4 16:19:37 2012 +0200 Upgraded QScintilla from version 2.6.1 to version 2.6.2. commit 272a0ca73c76a2b5029108857c4a34aa7b34d83a Author: Alan Garny Date: Wed Jul 4 15:55:56 2012 +0200 Minor update to the developer documentation. commit 2d80ad8c36af6741ad851ad63d66ad4572c0668e Author: Alan Garny Date: Wed Jul 4 15:29:27 2012 +0200 Some work on our CellML Annotation view plugin (#78) and the metadata editing GUI side of things in particular (now use a QWebViewer to lookup RDF triple information) which involved a bit of refactoring (#57). commit d152855f27b3b84d184d29cedf3ad329addac3dd Author: Alan Garny Date: Wed Jul 4 11:13:25 2012 +0200 Some GUI improvements to OpenCOR in general and our CellML Annotation view plugin in particular (#78). commit 357046ae829fcf67bf942fe7053c9cee076c3617 Author: Alan Garny Date: Wed Jul 4 10:20:29 2012 +0200 Some merging from our master branch. commit 822c43b71989d46d5a76b73aa3ca574132f6ec25 Author: Alan Garny Date: Wed Jul 4 10:20:03 2012 +0200 Some merging from our master branch. commit 9590f72e0eefde5e5aebff3b13edddf0e62e7343 Author: Alan Garny Date: Wed Jul 4 10:01:13 2012 +0200 At some point, I got a bit carried away when cleaning up our common.cmake file. This resulted in the tests not working anymore on Mac OS X. Now, it works again... commit c92a75f7432c3af0429c6e4edc5b3841adeffa26 Author: Alan Garny Date: Tue Jul 3 20:35:28 2012 +0200 Improved our new user message widget further (to hard code the font size wasn'\''t a good move, especially on Mac OS X since it didn'\''t increase it as we had hoped). commit 35c660bc7d7597c16df395d5f2e9b311cffbb21f Author: Alan Garny Date: Tue Jul 3 19:52:11 2012 +0200 Slightly improved our new user message widget. commit 17c779b04a94e3357abb3af16a33085689af1ced Author: Alan Garny Date: Tue Jul 3 19:43:51 2012 +0200 Created a new widget to '\''display'\'' a message for the user and made use of it when a view doesn'\''t support the current file type. Also some minor cleaning up (#57). commit 58044f7e170ff7a9b07e5a4c77b83956d16e256b Author: Alan Garny Date: Tue Jul 3 16:23:12 2012 +0200 Minor cleaning up (#57). commit 70411eb254ea19cd00962532badc9690c0b050d1 Author: Alan Garny Date: Tue Jul 3 13:43:31 2012 +0200 Minor cleaning up of the documentation (#57). commit a047c9101986d0f44948d40b0e923223e411ecf7 Author: Alan Garny Date: Mon Jul 2 19:14:16 2012 +0200 Minor cleaning up (#57). commit de649aff434521c12dcfb97064ae14771fe61b49 Author: Alan Garny Date: Mon Jul 2 19:09:55 2012 +0200 Can now remove a RDF triple from a set of RDF triples related to a given cmeta:id (#78). Also some minor cleaning up (#57). commit a66056d8f124f4b70bc3dd19ccb9c5adef4ccaff Author: Alan Garny Date: Sun Jul 1 16:15:07 2012 +0200 Merged LLVM and Clang which builds fine. Now, the question is whether we can actually use Clang to generate LLVM assembly code (rather than do it ourselves manually). commit 4845caf90ded8dcef60036800c12ad77f5f05f1c Author: Alan Garny Date: Sun Jul 1 14:59:39 2012 +0200 Some merging from our Clang branch. commit 3c5c39a6926dfcac85fecaa9673b91500a04d4a8 Author: Alan Garny Date: Sun Jul 1 14:39:03 2012 +0200 Argh, had got the copying of the config files wrong. commit fbce1bb8a6836fe6af4a44e57adceedebff4bb46 Author: Alan Garny Date: Sun Jul 1 13:23:00 2012 +0200 Have gone quite a long way trying to build Clang as a plugin which depends on the LLVM plugin, but kind of hitting an unsolvable problem now (no default constructor for BasicBlock) as a result of trying to export/import classes. A bit strange, so maybe I overlooked something somewhere?... Whatever the case, right now, it'\''s a bit crazy because I had export/import loads of LLVM classes in order for Clang to build. This means that it would a lot of maintenance work. Still, I am committing this for my own record. As for what next, there are two choices: 1) either stick to what we currently have (i.e. rely on LLVM only) or merge LLVM and Clang into one plugin (not what I want, but that might solve the export/import problem). commit 8b978bb7366ecf583f5ac63439970deb4d7d8a1e Author: Alan Garny Date: Thu Jun 28 19:28:55 2012 +0200 Some merging from our master branch. commit 140f871b27b92d7e03af381c66908a0f20e85a06 Author: Alan Garny Date: Thu Jun 28 13:07:02 2012 +0200 Minor GUI improvement for our CellML Annotation view plugin (#78). commit 053ee4757debb873a08c819c230c043c25edbd26 Author: Alan Garny Date: Thu Jun 28 11:49:35 2012 +0200 Done with handling the clearing of some/all the metadata of a CellML file (#78). Note that no serialisation back to the CellML file is done yet (not least because none would be done!), so it'\''s all at the GUI level at the moment. Also some minor refactoring (#57). commit 2ebe48f21d969ae6a7ec25e9bd7617350df0e237 Author: Alan Garny Date: Thu Jun 28 10:26:54 2012 +0200 Display the model-level metadata (i.e. cmeta:id == "") when there is no cmeta:id for a CellML element. commit fe4ecff8e7fde7bdb06ae9b1d412b86a0495c86c Author: Alan Garny Date: Thu Jun 28 10:18:25 2012 +0200 Minor improvement to our handling of the removal of some/all the metadata of a CellML file (#78). commit b805ae5166a869a097fe25f6a78e035c1e4e8468 Author: Alan Garny Date: Wed Jun 27 18:22:40 2012 +0200 Done with handling the removal of some/all the metadata of a CellML file (#78). Note that no serialisation back to the CellML file is done yet, so it'\''s all at the GUI level at the moment. commit 1c6ca5efb9047eb559a75021d520777d28ae487d Author: Alan Garny Date: Wed Jun 27 15:35:24 2012 +0200 Some minor refactoring for our tree view widget (#57), as well as some minor improvement to our CellML Annotation view plugin (#78). commit 4156b3d9783aec3396874f9736f37f7cd742da7c Author: Alan Garny Date: Wed Jun 27 15:00:57 2012 +0200 Some work on removing metadata from a CellML file (#78), resulting in some refactoring (#57). commit d66ebec3005fd122591bbb69346d3dd3c0ff2f85 Author: Alan Garny Date: Tue Jun 26 17:23:24 2012 +0200 Improved our addition of a metadata item (#78). commit 3378b7dd58309579877d143af8b3117b49e3d2e4 Author: Alan Garny Date: Tue Jun 26 16:36:30 2012 +0200 Added a reminder about an identifiers.org functionality which is not yet available. commit 299803c577c72ec2a446454cb5befc32e17aa98e Author: Alan Garny Date: Tue Jun 26 15:30:44 2012 +0200 Resuming our work on the creation/editing of metadata (#78). commit ed4ca0c1061b4bf169c23ba122bd79dabdcfe32a Author: Alan Garny Date: Tue Jun 26 13:28:00 2012 +0200 Minor fix for our plugin'\''s global header file. commit d590a5d085a56b72c8fed52ee980c3db1891bc19 Author: Alan Garny Date: Tue Jun 26 12:57:51 2012 +0200 Minor fix for our plugin'\''s global header file. commit d26c9491c3029316ddae5ab8f0d90faf14b2f365 Author: Alan Garny Date: Tue Jun 26 11:04:19 2012 +0200 Some merging from our master branch. commit 406bd261711dd17176356a15aeae0a7735936784 Author: Alan Garny Date: Tue Jun 26 11:03:24 2012 +0200 Some merging from our Clang branch. Note that we merged everything but the Clang-specific bits. So, the merge contains some cleaning up that was done in the Clang branch. commit 390beb42bed78dec6c0a6a7401ec53f56d3da811 Author: Alan Garny Date: Mon Jun 25 23:32:38 2012 +0200 Minor refactoring to avoid having to use QtGlobal in our global header files for plugins since use of QtGlobal may be incompatible with some third-party libraries (e.g. Clang which defines a function called foreach()) (#57). commit 19cc7d1475a8c228e2eb91b5dfb4daddb64ff33c Author: Alan Garny Date: Mon Jun 25 18:31:33 2012 +0200 Keep track of a change to a cmeta:id value of a CellML element, resulting in a CellML file to be considered modified, and in the mode and views tabs to be disabled (indeed, we don'\''t want to allow the user to switch modes or views while a CellML file is modified). Some minor cleaning up (#57). commit d743c31832f3678c0b8727c168d0f47c9d598761 Author: Alan Garny Date: Sun Jun 24 23:12:32 2012 +0200 Some LLVM-related cleaning up. commit ecaa5af7c1b1d3443011d33bc7cc6962219f6936 Author: Alan Garny Date: Sat Jun 23 13:28:45 2012 +0200 Minor editing of a comment. commit fabe8e20430b52e09d315abadccf29a64c06f308 Author: Alan Garny Date: Sat Jun 23 02:13:24 2012 +0200 Started work on having another go at using Clang (#98). commit b71ce9d7d86a0b280dd67ed777a29531e327d68a Author: Alan Garny Date: Fri Jun 22 18:05:35 2012 +0200 Started work on keep track of changes to a CellML file by first keeping track to changes to a CellML element'\''s cmeta:id value (#78). commit c19f59551451c9103b07aef2272e17704686c909 Author: Alan Garny Date: Fri Jun 22 16:58:05 2012 +0200 Some more cleaning up of common.cmake for Mac OS X. commit f235ad56e7d0aed9beeb24c78ffc1f5dc242ff7d Author: Alan Garny Date: Fri Jun 22 15:47:06 2012 +0200 A couple of changes (as a result of switching to Qt 4.8.1?) required to get all the references to Qt from a plugin right. commit 4ca122f45f0a205f4433c39ab99414a0997f74ff Author: Alan Garny Date: Fri Jun 22 15:01:45 2012 +0200 Fixed what I think was an issue with plugins in a deployed version of OpenCOR on Mac OS X (think, because I can'\''t test it since the only Mac OS X machine I have access to is a development machine and therefore has all of OpenCOR'\''s dependencies on it...). commit 162d0c6d95ff4e07c8e26a2b85b1584fe0f57bd8 Author: Alan Garny Date: Fri Jun 22 13:59:09 2012 +0200 We previously tried to be too efficient with regards to setting the locale and it broke a few things, so... commit d1eac5a1eca2c4f5e9fd1a156fd25cecdff40a06 Author: Alan Garny Date: Fri Jun 22 09:56:40 2012 +0200 Update the contact email address for OpenCOR'\''s packaging. commit ac79d3f911a9cc10d3692c2f3bb0b59c9235789f Author: Alan Garny Date: Thu Jun 21 22:48:56 2012 +0200 Updated our common CMake file to support Qt 4.8.1 rather than 4.8.0. commit a10035d7981086462fc90ef91f2f376cc812d6f7 Author: Alan Garny Date: Thu Jun 21 19:06:17 2012 +0200 Improved our support for different locales. commit c6c53d38d807f708ea0be1e45a81b77b27631d80 Author: Alan Garny Date: Thu Jun 21 18:12:22 2012 +0200 Slight improvement to the code for looking up some metadata from a cmeta:id value. commit 52ef7115cddd085b05db73fc38deaedff1c07ae5 Author: Alan Garny Date: Thu Jun 21 11:30:01 2012 +0200 Slight improvement to the code for looking up some metadata from a cmeta:id value. commit a8de2679347cb8826ad57fc7a033cd3f3b2bffd4 Author: Alan Garny Date: Thu Jun 21 10:09:40 2012 +0200 Some work on the GUI side of things for the CellML Annotation view (#78). commit 074f45927d517e9d3c3edf36dfb2f38b5d8cbbcf Author: Alan Garny Date: Wed Jun 20 18:10:39 2012 +0200 Some work on the GUI side of things for the CellML Annotation view (#78). commit 797b0b3c770f4dbee3650e4c9ea7012b5877887d Author: Alan Garny Date: Wed Jun 20 16:44:05 2012 +0200 Some work on the GUI side of things for the CellML Annotation view (#78). commit be7744b7082055654acaab5ddf104cd7893a92e9 Author: Alan Garny Date: Wed Jun 20 15:36:20 2012 +0200 Some work on the GUI side of things for the CellML Annotation view (#78). commit 30ea3b4b84bcd928d9405dd269fbe310c451c761 Author: Alan Garny Date: Wed Jun 20 09:58:30 2012 +0200 Minor GUI update as a result of our work on the CellML Annotation view (#78). commit ba3776d992a371a6d530843662567c79a4769f73 Author: Alan Garny Date: Tue Jun 19 18:31:50 2012 +0200 Some work on the CellML Annotation view (#78 and #90). commit 54f7f7377162cf53cfcdabe86a233823d96bf47f Author: Alan Garny Date: Tue Jun 19 17:58:32 2012 +0200 Minor cleaning up (#57). commit 4126e80ab9cab276aa59c6db9bd5d60a0f02eb87 Author: Alan Garny Date: Tue Jun 19 15:20:43 2012 +0200 Some refactoring work (#57) to make it possible to work on the creation/editing of CellML annotations (#78). commit 5137f1b1d8cbc65c52f25fcfc225a2c56b63a1f7 Author: Alan Garny Date: Mon Jun 18 13:00:31 2012 +0200 Minor update to a BioModels.Net qualifier description. commit 321ffca5c2a90dbbdafbe2690b862e26b6876952 Author: Alan Garny Date: Sun Jun 17 21:00:17 2012 +0200 Minor cleaning up (#57). commit c7c14f5ea63be551bd16b6755052f32291115231 Author: Alan Garny Date: Sun Jun 17 20:58:50 2012 +0200 Further improvement to the GUI side of the CellML Annotation view when translating it. We were refreshing calls to identifiers.org while there was no need to do so. commit 41b7f6863f1c0f83b191073288fb0af0f0bd42be Author: Alan Garny Date: Sun Jun 17 20:38:55 2012 +0200 Minor cleaning up (#57). commit 7ddbab2da70f08e0e3821ebfbb31d6ebbb11b1b9 Author: Alan Garny Date: Sun Jun 17 20:36:09 2012 +0200 Minor cleaning up (#57). commit 97626c139ce8ff223ef12e44a4e9a57a9c9e8aaa Author: Alan Garny Date: Sun Jun 17 20:34:02 2012 +0200 Some work which improves the GUI side of the CellML Annotation view when translating it. Indeed, when in CellML Annotation view, to retranslate OpenCOR would result in updateGui() being called which is fine except if another RDF triple information besides the first RDF triple'\''s id was selected. If another RDF triple information was selected, then the retranslation would revert things to the first RDF triple'\''s id... commit b896a1ecf5a17ec4d86930b333731e2a01e5efc7 Author: Alan Garny Date: Sun Jun 17 19:40:29 2012 +0200 Done with the looking up of a BioModels.Net qualifier (closes #97). commit 658f8751c5d820214609f28534314ba52bfc15ed Author: Alan Garny Date: Sun Jun 17 12:22:45 2012 +0200 Some work towards looking up a BioModels.Net qualifier (#97) by adding an SVG diagram to help with the description of a model/biology qualifier. commit 5d01914df66fa862e29fb021ab98b9800933991e Author: Alan Garny Date: Sat Jun 16 00:43:44 2012 +0200 Some work towards looking up a BioModels.Net qualifier (#97) by mainly adding some translations. commit 1c0c859e1504c7a33d893ba61b8d7bac519b5e5f Author: Alan Garny Date: Fri Jun 15 18:41:08 2012 +0200 Some work towards looking up a BioModels.Net qualifier (#97). commit 55fba3f44dd3d617d2a58dcd4f9cf37f4314b750 Author: Alan Garny Date: Fri Jun 15 11:33:35 2012 +0200 Some work towards looking up a BioModels.Net qualifier (#97). commit a3623dc8cd946a778c2560aed076d92250cc747a Author: Alan Garny Date: Fri Jun 15 09:59:31 2012 +0200 Slight GUI improvement which prevents a CellML annotation lookup from being refreshed unnecessarily (#78). commit ec7b92d3ef2fab2ce653c26f0d2c86882de10985 Author: Alan Garny Date: Fri Jun 15 09:49:28 2012 +0200 Minor cleaning up (#57). commit 44cdf9d938bcc846a67433d46f4365f78de3495c Author: Alan Garny Date: Thu Jun 14 21:30:18 2012 +0200 Nicer solution than the one implemented in b684f2a00b524a7c93a7f689bc37e62b4197b21f. commit a2bd1f364627bfa81a60d73d1e67d1d8311211e9 Author: Alan Garny Date: Thu Jun 14 19:00:20 2012 +0200 Fixed a nasty issue with regards to opening a file without any other file being already opened. commit c320b432638235650977d7af4870ccc9685b93aa Author: Alan Garny Date: Thu Jun 14 17:48:39 2012 +0200 Fixed a nasty issue regarding the updating of the CellML Annotation view, an issue which only occurred on Mac OS X when double clicking on a CellML file (resulting in a new instance of OpenCOR being started and letting the original instance know that a file had to be opened). commit c356856b19aff1abcb9d6a4e8a4230d9b20f3589 Author: Alan Garny Date: Thu Jun 14 15:44:32 2012 +0200 Minor cleaning up (#57). commit ab40c50aff4e2d17e989c36c4fd90ceeda3692f1 Author: Alan Garny Date: Thu Jun 14 15:08:40 2012 +0200 Improved our central widget (Core plugin) when it comes to the opening of a file. commit 533d85e40ad65f3c958a221d913e56379f9956e6 Author: Alan Garny Date: Thu Jun 14 15:07:24 2012 +0200 Minor improvement which really allows to run only one instance of OpenCOR at one time. Indeed, before if we had two copies of OpenCOR in two different folders, then we could run both copies simultaneously... commit 752b2a4bc9fb6d036335278a434cb060d29faffa Author: Alan Garny Date: Thu Jun 14 14:29:18 2012 +0200 Some minor cleaning up (#57). commit 10f5acad6a585d551eaafd3dd486ef9a0f8cb039 Author: Alan Garny Date: Thu Jun 14 13:33:53 2012 +0200 Some minor cleaning up (#57). commit d85eab10c7a325f71bc6b15358024104a63da56c Author: Alan Garny Date: Thu Jun 14 11:36:46 2012 +0200 Some minor cleaning up (#57). commit db37a1176f0d00c242df3f51a5a13e65210d1786 Author: Alan Garny Date: Thu Jun 14 10:44:14 2012 +0200 Some minor cleaning up (#57). commit ee2e61c1cbe123478812a9ade989a2715b852755 Author: Alan Garny Date: Thu Jun 14 10:32:15 2012 +0200 Some minor cleaning up (#57). commit eac81eba7df8e111f1a6bc93c2828ba11ac86cb6 Author: Alan Garny Date: Thu Jun 14 10:26:06 2012 +0200 Some minor cleaning up (#57). commit ae973cbef01974d7cb241f6dcd7f8310aeaa9366 Author: Alan Garny Date: Wed Jun 13 18:20:23 2012 +0200 Improved the fact that closing a file should free all the views associated with it (#96) by making sure that a view exists for the file. Indeed, before if no view existed for a file / view plugin combination, then a view would be created before being deleted which was really useless. Now, we check whether there is already a view (see centralwidget.cpp). commit 564f14bc17658a12e5a3195330da61d9b84aaed1 Author: Alan Garny Date: Wed Jun 13 17:56:54 2012 +0200 Minor cleaning up (#57). commit e49715f79e05cd4fd47660d0afd783e622963df8 Author: Alan Garny Date: Wed Jun 13 17:02:06 2012 +0200 Fixed a small issue with regards to #96. commit 9a81dd7d358d08a3d5f0d79601429317bff8b9ea Author: Alan Garny Date: Wed Jun 13 14:53:13 2012 +0200 Done with the fact that closing a file should free all the views associated with it (closes #96). Also some cleaning up (#57). commit 7083edae0d869b21e849f33ebc92054302810468 Author: Alan Garny Date: Wed Jun 13 11:02:21 2012 +0200 Minor cleaning up (#57). commit 5ad2b1a40e092cf93b0b618ed38c85cc05d5e080 Author: Alan Garny Date: Tue Jun 12 21:20:32 2012 +0200 Some minor cleaning up (#57). commit 4c79bd16aa3670ad5ac8b1b092e2b93201c427ce Author: Alan Garny Date: Tue Jun 12 20:36:14 2012 +0200 Minor fix (#96). commit 1b35d0e034b096ff295d3bf3880877024832dfca Author: Alan Garny Date: Tue Jun 12 20:28:37 2012 +0200 Set things up for freeing everything when closing a file (#96) and it all works fine with the CellML Annotation view. Just need to do finish the work by taking care of the Raw CellML, Raw and Single Cell Simulation views... Otherwise, also some minor cleaning up (#57). commit 31c4da2190873d50509c8d9106bef70506dcbc7e Author: Alan Garny Date: Tue Jun 12 20:13:48 2012 +0200 Minor cleaning up (#57). commit c5fa554559145b1bbab547b4aa2ef19a8c8ed2f2 Author: Alan Garny Date: Tue Jun 12 18:31:54 2012 +0200 This properly closes issue #95 and not the previous commit which was completely useless! commit 47370b6fc0653e13fb9845d4d8e7995ea456eeac Author: Alan Garny Date: Tue Jun 12 17:44:00 2012 +0200 Closes #95. commit db0ddef0becf4eda6e00b391d6aae4e0b92e0f88 Author: Alan Garny Date: Tue Jun 12 17:21:28 2012 +0200 Updated the developer documentation as a result of upgrading XCode to version 4.3.3. commit 1a3770f1cceaa043cf916bdb4220f68f4b0cbb20 Author: Alan Garny Date: Tue Jun 12 17:04:16 2012 +0200 Some work on issue #94. commit 465e610e50b6974a7bc2c6566984d52d4ca61fb8 Author: Alan Garny Date: Tue Jun 12 15:02:56 2012 +0200 Now use the version of QtSingleApplication used by Qt Creator since it implements a few things that should help us with issue #94. commit cea6ffdb0c90baa512ff5d4d4cd21525e6da3b7d Author: Alan Garny Date: Mon Jun 11 21:06:33 2012 +0200 Some cleaning up making it '\''faster'\'' to build tests (#57). commit 5e12a4868ab91ee15b0f8d499e447ef842e21a65 Author: Alan Garny Date: Mon Jun 11 20:55:45 2012 +0200 Addressed an issue with building tests on Windows (after having fixed something on Mac OS X!). commit a4a15374dfe98f6abbb6eb2bfc279ee40da1f385 Author: Alan Garny Date: Mon Jun 11 17:11:18 2012 +0200 Addressed an issue with building tests on Mac OS X (probably also valid on Linux?...). commit cc2139670e2d1e890f6957868f8bf6859cb82210 Author: Alan Garny Date: Sun Jun 10 20:55:43 2012 +0200 Support the opening of OpenCOR-associated files from the file manager (closes #94). Also some minor cleaning up (#57). commit d71857b38d455948e001336149b5d1f7825bf379 Author: Alan Garny Date: Sun Jun 10 00:23:50 2012 +0200 Working on the opening of OpenCOR-supported files from the file manager (#94). commit eca984f429e66f342a8279d8bfec33d66f2654a3 Author: Alan Garny Date: Sat Jun 9 19:04:20 2012 +0200 Working on the opening of OpenCOR-supported files from the file manager (#94). commit 8cbbfbd039a12ef729e41f0932a93ad0fc46af77 Author: Alan Garny Date: Fri Jun 8 20:57:32 2012 +0200 Addressed a small issue of an RDF triple'\''s id containing %3A which should have been replaced by '\'':'\'' (#92). commit ac0f0a17b28d64e2d1226efb1377b0676f9c52c5 Author: Alan Garny Date: Fri Jun 8 18:18:54 2012 +0200 Some minor refactoring (#57). commit 9bb729a43fe3f37a6ddbbf7a46117c42b50bef96 Author: Alan Garny Date: Fri Jun 8 17:36:15 2012 +0200 Allow to look up a resource in our BioModels.Net view for our CellML Annotation view (#92). commit 93ddef2beb331a08399d9473e2d3bf6cf18f41df Author: Alan Garny Date: Fri Jun 8 16:21:51 2012 +0200 Some trivial refactoring (#57). commit bbfd19ae631ad43b473db667e5b7280d0e5509f5 Author: Alan Garny Date: Fri Jun 8 15:14:59 2012 +0200 Fixed another GUI issue in our BioModels.Net view for our CellML Annotation view (#92). commit dc04dc0ce41f91eae0aab0e11de7fe2fde1a2947 Author: Alan Garny Date: Fri Jun 8 14:53:27 2012 +0200 Fixed a few GUI issues in our BioModels.Net view for our CellML Annotation view (#92). commit ecbd11c25accc473d44c228fc1aed0dcdeda03c7 Author: Alan Garny Date: Fri Jun 8 13:56:22 2012 +0200 Done with supporting identifiers.org URIs '\''natively'\'' (closes #93). commit 0a995c7cf289f174015181c775b09b42ec85aa49 Author: Alan Garny Date: Fri Jun 8 13:09:37 2012 +0200 Some work on supporting identifiers.org URIs '\''natively'\'' (#93). commit 7e17007048c7ab45545cd1e670fc71773a605ae6 Author: Alan Garny Date: Fri Jun 8 11:25:44 2012 +0200 Some work on supporting identifiers.org URIs '\''natively'\'' (#93). commit 54000f7fb3216adf1eb4ccfe0bd71e2443103aee Author: Alan Garny Date: Thu Jun 7 17:46:42 2012 +0200 Slight improvement for testing things on Linux without first having to deploy OpenCOR. commit 470b907ee05f09b6c4761793ae6f3e837e43d776 Author: Alan Garny Date: Thu Jun 7 17:29:55 2012 +0200 Make sure to deploy the GIF and JPEG image format plugins so that we can view GIF and JPEG images from websites on Windows and Linux (it'\''s automatically deployed on Mac OS X). commit ee9c3add479c8361948e8ba33a276dc8df45a05e Author: Alan Garny Date: Thu Jun 7 16:33:58 2012 +0200 Some minor improvements to our CellML Annotation View plugin when an error occurs when trying to look up a MIRIAM URN (#92). commit de4c12a7944555a0a17b9a0c36927f0f2457d3a6 Author: Alan Garny Date: Thu May 31 19:05:50 2012 +0200 Made the row of the selected MIRIAM URN bold (#92). commit d5be0c971877b41b5fe55065e7467875cd74b395 Author: Alan Garny Date: Thu May 31 18:37:13 2012 +0200 Some work on supporting the looking up of a BioModels.Net id from our BioModels.Net view (#92), and some more work also on our CellML Annotation View in general (#78). commit d7cf8ba31777b172b584a213b6d4e4c67b2a5a2e Author: Alan Garny Date: Thu May 31 12:22:43 2012 +0200 Some work on supporting the lookin up of a BioModels.Net id from our BioModels.Net view (#92). commit 3eab9f4e04abdce3fe9682cebc46a8a0fff4970b Author: Alan Garny Date: Thu May 31 12:14:41 2012 +0200 Starting work on supporting the lookin up of a BioModels.Net id from our BioModels.Net view (#92). commit 2957ac07a55ef89867e39858337ab5213e9f57f4 Author: Alan Garny Date: Wed May 30 17:55:58 2012 +0200 Minor improvement to our BioModels.Net view (#92). commit 18f6dadbabf91077b63ae38be21e669a9306dfc1 Author: Alan Garny Date: Wed May 30 17:47:09 2012 +0200 Some work on our BioModels.Net view (#92). Also some cleaning up and refactoring here and there (#57). commit ac1acf7f6e4d9f8558ea0eab4a4316b037e222c0 Author: Alan Garny Date: Wed May 30 15:16:47 2012 +0200 Minor improvement to our translation strategy. commit f99ac060074307c0391688d47aa7d7446e12fbd5 Author: Alan Garny Date: Wed May 30 14:27:32 2012 +0200 Some work on our CellML Annotation View plugin (#78). commit 20603670aa7e11a7f752520f9d6f5a8944a86998 Author: Alan Garny Date: Wed May 30 14:02:34 2012 +0200 Fixed an issue with the loading of plugins following our recent improvement (see commit 5b85057cebc0c99aa384e65f2ec1b4dbf3fc8981). commit 3ab9a02ebdfa7d9c2d29f6a0e74808c925ba66b5 Author: Alan Garny Date: Wed May 30 14:00:37 2012 +0200 Some minor refactoring (#57). commit b9681bdb7d3120c9ce332ac5a5a28861872d74ee Author: Alan Garny Date: Wed May 30 10:47:32 2012 +0200 Some minor refactoring (#57). commit aca56be9010edeab8851b31887b0cc052dd8d296 Author: Alan Garny Date: Tue May 29 18:30:48 2012 +0200 Some cleaning up (#57). commit f9ea8f42e740c0465ae948ed10d5428d47b1eda2 Author: Alan Garny Date: Tue May 29 18:14:57 2012 +0200 Our plugin manager used to keep track of all the plugins, but not of their dependency (even though it would load the plugins in the right order). This means that in some cases, retranslation wouldn'\''t work for some plugins (e.g. the CellMLAnnotationView plugin since it was considered to be '\''loaded'\'' before the Core plugin). Now, it'\''s all fine... commit 9615fc75e8e2b0ee1262f9577f654961d4598e59 Author: Alan Garny Date: Tue May 29 16:59:26 2012 +0200 Some '\''major'\'' cleaning up (#57). commit 2b7f4593457c0625fd46e44480cacc64371f36aa Author: Alan Garny Date: Tue May 29 15:07:12 2012 +0200 Some minor cleaning up (#57), as well as some work on our CellML Annotation view (#78). commit 306c3071fa8c394c911842ea04cdb6668c4a6219 Author: Alan Garny Date: Tue May 29 11:36:43 2012 +0200 Some minor cleaning up (#57). commit b5e6dfa7915e6716f8b3a4d672713b587e7dcb24 Author: Alan Garny Date: Mon May 28 17:57:12 2012 +0200 Some work on our BioModels.Net view (#92) for our CellML Annotation view (#78). commit f04d6c9c38c9b686931bd1721fe87ead4a0fcc0a Author: Alan Garny Date: Mon May 28 17:33:27 2012 +0200 Some work on our BioModels.Net view (#92) for our CellML Annotation view (#78). commit 52caa5a7652ec5866bb2ea788fe6c34f38cf8e59 Author: Alan Garny Date: Mon May 28 16:13:30 2012 +0200 Working on a BioModels.Net view (#92) for our CellML Annotation view (#78). commit 7c6773e08efe8b87f157239e3e5eb71689ad9505 Author: Alan Garny Date: Mon May 28 15:48:59 2012 +0200 Some minor refactoring (#57). commit 1dc388c21031f2791fec0f8d6d5fb0adab3c4b90 Author: Alan Garny Date: Mon May 28 14:59:19 2012 +0200 Can now determine the type of an RDF triple, i.e. whether it refers to a BioModels.Net qualifier or to something unknown. In the former case, we can determine whether it'\''s a model or a biology qualifier. As for the RDF triple'\''s object, we can recognise both MIRIAM URNs and identifiers.org URIs (which we convert into a MIRIAM URN). commit e7beb7bf5db0c4daf1446635b5f86596a8726065 Author: Alan Garny Date: Sun May 27 21:39:37 2012 +0200 Built all the different version of the LLVM plugin. commit f7e3f476405a4b27aa647ee4c023972aaeb20068 Author: Alan Garny Date: Sun May 27 21:38:35 2012 +0200 Forgot to edit one LLVM file which prevented MSVC from building a release version of LLVM. commit 2928e6f3334b113287c76a9befdc2128e82389ee Author: Alan Garny Date: Sun May 27 19:48:52 2012 +0200 Addressed a small issue which prevented us from building LLVM on Linux. commit ecc69cbd8a5424b86892b16679e800fc08cbcbb9 Author: Alan Garny Date: Sun May 27 17:39:23 2012 +0200 Some minor improvements for our Windows build. commit 63981599d358675af771d421708558e8aa5021f8 Author: Alan Garny Date: Sun May 27 08:21:25 2012 +0200 Upgraded LLVM from version 3.0 to 3.1. Right now, we have everything to build LLVM on Windows, but it should also work on Linux and Mac OS X. commit 1b5630a0362dd29b3fb3543b922b27b53f14b538 Author: Alan Garny Date: Thu May 24 10:28:52 2012 +0200 Some minor cleaning up (#57). commit 15676780f0bb65636e6c46600c92feb70ac90aec Author: Alan Garny Date: Wed May 23 17:53:43 2012 +0200 Minor cleaning up to please gcc on Linux (#57). commit 543e409aab9df41e8b10b55eefb6ded502953cd8 Author: Alan Garny Date: Wed May 23 17:48:19 2012 +0200 Determine the type of RDF triples we are dealing with (#73). commit a87d67ef6941c559d9016cfd4259301b65b21f70 Author: Alan Garny Date: Wed May 23 17:19:24 2012 +0200 Some minor cleaning up (#57). commit ccc9ff81f7396b6bedd7d3dab184ed0b20b458be Author: Alan Garny Date: Wed May 23 10:44:39 2012 +0200 Minor improvement to our tab order strategy (#78). commit f2b377300d82943670720ac415ba978c70acb3c2 Author: Alan Garny Date: Wed May 23 10:40:39 2012 +0200 Addressed a tab order issue between the list of CellML elements and the details GUI (#78). commit 2aeb0781d50158ffa32b2ea129348c711a2c22f3 Author: Alan Garny Date: Wed May 23 10:37:39 2012 +0200 Some minor cleaning up (#57). commit 20184aed16e9d00a53761fb25fc2e842bdd55b7e Author: Alan Garny Date: Wed May 23 08:56:50 2012 +0200 Improvements (hopefully!) to the GUI side of the CellML Annotation view (#78). commit cac3020502c6fcb2dd4aabe4e95b505856261ac1 Author: Alan Garny Date: Tue May 22 19:39:46 2012 +0200 Some minor cleaning up (#57). commit 6673aaf1aa868b9beab8b2c99baaa9ebcba0cf64 Author: Alan Garny Date: Tue May 22 19:35:55 2012 +0200 Improvements to the GUI side of the CellML Annotation view (#78). commit 5bbede4adb6aa5e1c56952e620bdd99fed7a3ca9 Author: Alan Garny Date: Tue May 22 19:21:13 2012 +0200 Improvements to the GUI side of the CellML Annotation view (#78). commit 259970206152cfa9260dae5f48dd3b088ae53ef2 Author: Alan Garny Date: Tue May 22 18:16:47 2012 +0200 Some cleaning up (#57). commit 7e0faf243b44402e0b7fe80a20a8f3a6956469e7 Author: Alan Garny Date: Tue May 22 18:14:23 2012 +0200 Some cleaning up (#57). commit a59f7ce12485f904ecfbda345b772f339c1c9ba6 Author: Alan Garny Date: Tue May 22 18:13:57 2012 +0200 Some cleaning up (#57). commit 54301d28d7c8c4859f92ac7aae3e72335cbab56a Author: Alan Garny Date: Tue May 22 11:31:16 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Minor improvement to our GUI'\''s default settings. commit 17b60f06b752c853987f36e15888016693f04f9e Author: Alan Garny Date: Tue May 22 10:06:37 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Now, don'\''t show any metadata if a CellML element doesn'\''t have a cmeta:id value. commit dc08ab6bfb9044b7a794bd24785a655d67b6d6bf Author: Alan Garny Date: Tue May 22 09:55:19 2012 +0200 Minor fix for Mac OS X. commit 6de47549e07230e2dae4de3242e97ed58f5f5f67 Author: Alan Garny Date: Mon May 21 18:13:33 2012 +0200 Working towards retrieving the type of a group of RDF triples (#78). commit 4c1ee4a79f31e55d0a6f89719af03de67229adae Author: Alan Garny Date: Mon May 21 17:45:03 2012 +0200 A bit of refactoring (#57) for our CellML Annotation view for a CellML file (#78). commit 0ff51521cd1a708dbee607ffb7cb3df36f3cc92d Author: Alan Garny Date: Mon May 21 16:02:33 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Now uses a combo box (filled with metadata ids) to change the value of a cmeta:id field. commit f8e4972e0939487e5099c41f19ed16e1b1497e6c Author: Alan Garny Date: Mon May 21 14:16:02 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Now, we update the metadata associated with a particular CellML element when modifying its cmeta:id value. Also improved the GUI side of things with regards to responsiveness. commit 9014ad674d8bfe948d711ecec171843c7dcd332a Author: Alan Garny Date: Mon May 21 10:40:17 2012 +0200 Some minor refactoring (#57). commit eba39b15e3f429646b28076d5b4dfd39635a3cb7 Author: Alan Garny Date: Sat May 19 18:37:43 2012 +0200 Minor fix following some previous refactoring (#57). commit 9107023f379812ad892a03ee3a20c25a531c49f0 Author: Alan Garny Date: Sat May 19 13:39:36 2012 +0200 Some cleaning up (#57). commit 4a28ed83b6c1766b0bab1e581a5eecc5747f10cc Author: Alan Garny Date: Sat May 19 05:31:23 2012 +0200 Some cleaning up (#57). commit 87de54e71ffb83b87b04d4924a63cdb0447e19aa Author: Alan Garny Date: Sat May 19 05:22:51 2012 +0200 Some minor cleaning up and refactoring (#57). commit de9e6ad69736fc0ef994bb0f9243a8512f6f1c4b Author: Alan Garny Date: Sat May 19 04:07:29 2012 +0200 Some minor cleaning up (#57). commit 9666227743a870852941d217cd515c36eac69e09 Author: Alan Garny Date: Sat May 19 03:47:34 2012 +0200 Some cleaning up (#57). commit 3be90e7769d28ecfdd6c9cdc01b203ecb23a67f5 Author: Alan Garny Date: Sat May 19 03:38:18 2012 +0200 Some refactoring (#57). commit 8b298e47604d48fea4b2297d12477ccbeee2a42c Author: Alan Garny Date: Sat May 19 03:29:40 2012 +0200 Some cleaning up of code (#57). commit 699e746cc07fc510d34c738ad7bc25ff79a136db Author: Alan Garny Date: Sat May 19 03:23:01 2012 +0200 Some cleaning up of code (#57). commit 2dc1005b9838fa3765d2e2d6ad16a80e94046ded Author: Alan Garny Date: Sat May 19 03:06:46 2012 +0200 Some cleaning up (#57). commit 48883cfb1782db050573dc62cda960876f086204 Author: Alan Garny Date: Sat May 19 03:01:58 2012 +0200 Some refactoring (#57). commit fef2021b28713138f0650ff92867fe5086626b90 Author: Alan Garny Date: Sat May 19 01:32:08 2012 +0200 Some cleaning up (#57). commit f9396de628e2f0650895dc55eb51bfb4220dde6b Author: Alan Garny Date: Fri May 18 20:13:30 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 4e2ac2f3c5dbc3eb4c01c9d2637a909fc2055c86 Author: Alan Garny Date: Fri May 18 19:35:35 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 3971e9ba90f3e060037897e197f579f687bfbf3a Author: Alan Garny Date: Fri May 18 18:38:45 2012 +0200 More refactoring for our CellML Annotation View plugin (#57 and #78). commit 77b1607fc6abec4c4bff55ab276b623cb5639222 Author: Alan Garny Date: Fri May 18 17:43:03 2012 +0200 More refactoring for our CellML Annotation View plugin (#57 and #78). commit 66725ec960a74b307aaae774d78b5ff6d979f009 Author: Alan Garny Date: Fri May 18 14:22:40 2012 +0200 Improved the listing of RDF triples (#78). commit f1fed1adf59b65556be836d04c23ab30c085096e Author: Alan Garny Date: Fri May 18 00:31:13 2012 +0200 Some heavy refactoring to make it easier to further develop our CellML Annotation View plugin (#57). commit fe99fad5a23f5f29d8b9f523ef12df6371bf7785 Author: Alan Garny Date: Thu May 17 17:10:18 2012 +0200 Some minor cleaning up (#57). commit 2906fbab19ac320af76b1c59aecd2fdd96a62461 Author: Alan Garny Date: Thu May 17 15:53:23 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 145ad343f8b1895c83bf5fbee757b43db273373f Author: Alan Garny Date: Thu May 17 15:37:10 2012 +0200 Some minor refactoring (#57). commit 20a2a9e2110a96c0a2dc7ed935e5740519fd7924 Author: Alan Garny Date: Thu May 17 14:52:06 2012 +0200 Some minor refactoring (#57). commit b7ed305c377e6572a5584c1bacfe89dd779e015d Author: Alan Garny Date: Thu May 17 14:42:22 2012 +0200 Some minor refactoring (#57). commit 6c2775735f7f9e68d095062aecaded2d875a0512 Author: Alan Garny Date: Thu May 17 13:06:14 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit a14ae858e3d41df7d8d77cfea9213b24a108a180 Author: Alan Garny Date: Thu May 17 11:56:39 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 7f07f7a69d4a307c7d6e04ee04b4b95d58f88ac2 Author: Alan Garny Date: Thu May 17 11:47:51 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 8d6932d9859ba9701fbcd77177f17d00bd034aed Author: Alan Garny Date: Wed May 16 22:21:00 2012 +0200 Some heavy refactoring (#57). commit a08b0c2c3f744187ce40ed71158e93c3e4fc5aab Author: Alan Garny Date: Wed May 16 10:40:30 2012 +0200 Some refactoring (#57). commit c98e30a2abaec6aaa116e49a80faa92eab4b2e26 Author: Alan Garny Date: Wed May 16 09:42:41 2012 +0200 Some minor refactoring (#57). commit 42023e4ed2217cec2bdc47d8303805eaafec1242 Author: Alan Garny Date: Tue May 15 17:02:04 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 67fcbff58d539a56161f062b0415140a8d352d6e Author: Alan Garny Date: Tue May 15 15:55:33 2012 +0200 TortoiseGit getting confused... commit ff056f753a9792d6a3d654f930aa40393f7e7266 Merge: 402637de1 27ff79746 Author: Alan Garny Date: Tue May 15 15:54:16 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor Conflicts: src/plugins/editing/CellMLAnnotationView/src/cellmlannotationviewdetailswidget.cpp commit 402637de1e6a30c9fa2a859260f956e7624e4205 Author: Alan Garny Date: Tue May 15 15:18:31 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 27ff79746ac19584f8bdbc65939aa7601024f7b9 Author: Alan Garny Date: Tue May 15 15:18:31 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 135768c04e8798833b54aea29aeec4956a51f36b Author: Alan Garny Date: Tue May 15 14:57:00 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit ebb433ebba0b360f3ea4729e8cac8d6e142270f7 Author: Alan Garny Date: Tue May 15 14:24:46 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 8d2309da97ffa6ff337f7321aea513f9bef0123d Author: Alan Garny Date: Tue May 15 14:18:34 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 926c5cc41fd960bc8063ffb35ad60dd607eefdff Author: Alan Garny Date: Tue May 15 13:50:28 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit ccc215b898fe8732718cc382c8febfc66118d338 Author: Alan Garny Date: Tue May 15 13:18:15 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 4ef4cc941782ccc19ea6b7f900eed93e4d3e81ee Author: Alan Garny Date: Tue May 15 11:47:50 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 21b53912d04793bfce78d51821a9727bbb0e52df Author: Alan Garny Date: Tue May 15 11:21:17 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 6679f7e2ed9cf310df626c46b1cd5f45e3361baa Author: Alan Garny Date: Mon May 14 18:23:02 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 6fcbc2429e8dda31fa9201c866bb19fd6f6c76b0 Author: Alan Garny Date: Mon May 14 18:21:44 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 0c45df17b1b01a014a76e40dc2a26c79226470b6 Author: Alan Garny Date: Mon May 14 18:13:02 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit e993cc10b6ce65240c0421e751b17968f4874785 Author: Alan Garny Date: Mon May 14 18:03:39 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 26415366ed535e1dcde0a1cd5c445350f0dd3323 Author: Alan Garny Date: Mon May 14 16:56:59 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit e1e99ea522587634f3b7af9c07f3281b0ba79a58 Author: Alan Garny Date: Mon May 14 15:45:43 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 2c4d3005e48c7edce12663bdb3258a4616872c40 Author: Alan Garny Date: Mon May 14 14:30:03 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 30fcadee1ddb7d2c0a6ce1ce95b40304458c3920 Author: Alan Garny Date: Mon May 14 13:52:49 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 8fdff51af3677ad9defe890e51d1f41773ae70df Author: Alan Garny Date: Mon May 14 00:15:07 2012 +0200 Minor fix to our common.cmake file. commit e60534c5bfc027b4d51091fc0638bed0ad21e77a Author: Alan Garny Date: Sun May 13 23:58:56 2012 +0200 Minor fix to our common.cmake file. commit e62a4dd4c5d0722cca44669d8c7d5088a7a830dc Author: Alan Garny Date: Sat May 12 13:42:43 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 2bd5bb6219becb7ff6f0dd6e7ff6b8edb7df9e35 Author: Alan Garny Date: Fri May 11 14:44:06 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 902959549f35dc142783c7e34ffd18fc84b0d279 Author: Alan Garny Date: Fri May 11 14:14:25 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 22fcff63b0f547e9b26d75d5b90b9fde84168338 Author: Alan Garny Date: Fri May 11 13:15:14 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit f35b6b4eb99053a6eb559be449a51f55c421196c Author: Alan Garny Date: Fri May 11 10:52:05 2012 +0200 Disabled an annoying MSVC warning which has nothing to do with OpenCOR. commit cb8b2448e76a1d946ed340e2684f82a32a1ca1db Author: Alan Garny Date: Fri May 11 10:44:17 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit de37a8149719f0e58123f375fc7ee8181def0fe0 Author: Alan Garny Date: Thu May 10 19:20:13 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit ddebc34e76d6b0ecc706d3523fa6f80f1994419e Author: Alan Garny Date: Thu May 10 17:53:13 2012 +0200 Minor cleaning up (#57). commit dd1545c4d9c8c4811b2798336fb61b15e7454fc2 Author: Alan Garny Date: Thu May 10 17:51:56 2012 +0200 Some refactoring (#57). commit 44e10f82df4161c38d774dcbdc0d22b992cfd2a4 Author: Alan Garny Date: Thu May 10 17:21:57 2012 +0200 Minor cleaning up (#57). commit f490a142b4aede40f53d7300f4fc0cd513c38252 Author: Alan Garny Date: Thu May 10 16:32:09 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit d2177ad2159f3dcb848f5248c0733ca8fdc071f1 Author: Alan Garny Date: Thu May 10 16:14:55 2012 +0200 Minor cleaning up (#57). commit b1bda1695af7f5327eacbc5552b5b6c980208324 Author: Alan Garny Date: Thu May 10 13:58:33 2012 +0200 Minor cleaning up (#57). commit 88b22009b6c8c253d71e1604e192174ead01342f Author: Alan Garny Date: Thu May 10 11:02:47 2012 +0200 Some minor cleaning up (#57). commit fb5b527c88f01ed8d0772320f82cbef675ff5e91 Author: Alan Garny Date: Thu May 10 10:18:28 2012 +0200 Some minor cleaning up (#57). commit 451934b15e8c1b1ed8c0086bd47570c1d21df968 Author: Alan Garny Date: Thu May 10 09:18:46 2012 +0200 Minor cleaning up (#57). commit afe83e902efbad84d138ceb116b85b356abe1c05 Author: Alan Garny Date: Wed May 9 13:17:33 2012 +0200 A couple of minor fixes. commit ce6bbe0a4510791c700f020c0a36165510caa2ce Author: Alan Garny Date: Tue May 8 19:56:54 2012 +0200 Minor cleaning up (#57). commit c9078cec4aa276e637911834c8dc7e8263537891 Author: Alan Garny Date: Tue May 8 01:24:48 2012 +0200 Some work on retrieving annotations from a CellML file (#73). commit 98502ae652e3666e9006b6b4df1689b8568ad3cb Author: Alan Garny Date: Tue May 8 01:09:13 2012 +0200 Some work on retrieving annotations from a CellML file (#73). commit 371132d785fce52f5317f5f53cfa9129f22e4d0e Author: Alan Garny Date: Tue May 8 00:41:13 2012 +0200 Some work on retrieving annotations from a CellML file (#73). commit 4085893be99f8c0623365aff9710292e28f60aeb Author: Alan Garny Date: Mon May 7 19:05:53 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 82df73f0de05eee9dc7c19bcb9d2a5e8fc31bb60 Author: Alan Garny Date: Mon May 7 16:44:13 2012 +0200 Minor cleaning up (#57). commit 3d152a0de5ff6af09d92efc55281d8f2e6d057f4 Author: Alan Garny Date: Mon May 7 13:43:44 2012 +0200 Minor cleaning up (#57). commit acd9ed53e1d1452c35dee45aa7ed2ea8b167a555 Author: Alan Garny Date: Sun May 6 21:06:45 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit febcabf170101118e7d98e93ca0e0dba5cade0d0 Author: Alan Garny Date: Sun May 6 21:04:10 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit f7b0961b387fa46af396ff4530bb00440df5f492 Author: Alan Garny Date: Sun May 6 19:01:28 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 9705015b31f9521b4b4c1d0311316c742252da0b Author: Alan Garny Date: Sun May 6 18:40:47 2012 +0200 Removed the listing of MathML element nodes in the CellML Annotation view, since no metadata can be associated to them as such (no cmeta:id which can be set; #78). commit 6e05a28ef90d94dec6e2bb7089bb6d08c8f61cde Author: Alan Garny Date: Sun May 6 18:30:14 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit d82fe806843e6f5e19dea3d8ecb0254917cfd6e0 Author: Alan Garny Date: Sun May 6 17:52:24 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Also some minor cleaning up (#57). commit 801383aa48b8eb61cafced0d7c2f2603bd2dfa6f Author: Alan Garny Date: Sun May 6 14:28:18 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 93e788c6f6c11155a172eb3cf96ff530adc932b7 Author: Alan Garny Date: Sun May 6 14:00:16 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit b8ef86b6ac2a5cbc916248eeaec6533a002a7200 Author: Alan Garny Date: Sun May 6 11:40:53 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit a03549fc057283ecf53d95880478e2962a462d47 Author: Alan Garny Date: Sun May 6 02:28:20 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit f38ece8abb97fee24e52206f63e07f1849b78b6b Author: Alan Garny Date: Sun May 6 01:30:44 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit a5b953ddd95e1d37719e6a56058f93687b1b85d8 Author: Alan Garny Date: Sun May 6 00:40:22 2012 +0200 Some minor cleaning up (#57). commit c8b635d4cc19085ef0b197384adb3c8ca7d7bc46 Author: Alan Garny Date: Sun May 6 00:00:29 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 19a145d8c2f5dde76436fcfe974f43281f07c23c Author: Alan Garny Date: Sat May 5 20:14:14 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit d80e97374bcfbb302052bc357a45e4e47226a097 Author: Alan Garny Date: Sat May 5 18:59:21 2012 +0200 Some minor cleaning up (#57). commit 400c506cca36edf6949d2a51dd01dde155c94609 Author: Alan Garny Date: Sat May 5 15:57:20 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 6337cf878b6f1840629bf1358bad9b7ab79704f0 Author: Alan Garny Date: Sat May 5 15:01:21 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 0d10718bcdba9d631cacfc3c469061081cfc51a4 Author: Alan Garny Date: Sat May 5 14:43:45 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 5ba829ca811a712b6d94be8666a4bec120185a8c Author: Alan Garny Date: Fri May 4 18:41:44 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit ce86bd1707255ef1611f78f38416257d389f96d6 Author: Alan Garny Date: Fri May 4 16:54:39 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 4b5968e670c4db75818cec71da9af181e9ba38c8 Author: Alan Garny Date: Fri May 4 16:51:16 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit eca25d5477aeb9f0ec496649afbb358640ca64ce Author: Alan Garny Date: Fri May 4 16:16:10 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 64f5051c79263e4a05b260a2f12ca7d59dc27419 Author: Alan Garny Date: Fri May 4 15:50:42 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit c3c56b6285dbf13e283500d487a120f82070d76a Merge: b0b4fe0b2 8f7177a71 Author: Alan Garny Date: Fri May 4 15:16:48 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit b0b4fe0b21cf06d4525b19d382c3d6ce20f8115a Author: Alan Garny Date: Fri May 4 13:23:32 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 8f7177a715abc07e0e7cd47918abe91559bb9381 Author: Alan Garny Date: Fri May 4 13:23:32 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit baa02054a1cb4c138f3709a9cd20c57b02eaba60 Author: Alan Garny Date: Fri May 4 11:54:39 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit 18c2205dfd04b47a9fd7b3947741a66522456c8e Author: Alan Garny Date: Fri May 4 11:53:13 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit 20e5ae0e69271aef18227b638a97245043b21655 Author: Alan Garny Date: Fri May 4 10:29:18 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit 7941831e61c6d9de0018b87c4ad74e1d8e1df00f Author: Alan Garny Date: Thu May 3 18:40:15 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit d83c582ed6d3d1f1f0704f74d2742ab1b172591e Author: Alan Garny Date: Thu May 3 17:40:17 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit 419f0787dfe7b31f1e00aabfca48b6bd20376777 Author: Alan Garny Date: Thu May 3 17:13:40 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). commit 53842dd4bb813fd70c416dcda393315c93737b47 Author: Alan Garny Date: Thu May 3 15:10:05 2012 +0200 Working on retrieving existing annotations from a CellML file (#73). Just some code that I am currently using to understand the way annotations work in CellML... and it'\''s a pain! commit 1043fc1a9781c1d671bee5a56d043261f903142c Author: Alan Garny Date: Wed May 2 17:33:43 2012 +0200 Some refactoring of CellML-related code which used to leak (see https://tracker.physiomeproject.org/show_bug.cgi?id=3291). commit feb646cfb8a05a86a8b57193d0439148950785fe Author: Alan Garny Date: Wed May 2 11:37:56 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 3c1d63d8d5f56c5886258d48b1321ccdaee859da Author: Alan Garny Date: Tue May 1 11:27:09 2012 +0200 Some minor cleaning up (#57). commit d7b0570d1a184e580d810b513e3a007374f4a6a0 Author: Alan Garny Date: Fri Apr 27 18:38:37 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Note: the metadata tree view doesn'\''t its height initialised properly... Why?! Well, because it'\''s the end of the week! :) (see line 93 of cellmlannotationviewplugin.cpp) commit 25a781f0232ca13a8c157766f5ee26f62b60f030 Author: Alan Garny Date: Fri Apr 27 17:55:35 2012 +0200 Minor improvement (#72). commit 2aec6f8c0fa39b6553c079e59517b2d18a7ba00c Author: Alan Garny Date: Fri Apr 27 17:23:10 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Note: the metadata tree view doesn'\''t its height initialised properly... Why?! commit b3796fbe1c1d2fe84404e0ba2497ef9199d3a606 Author: Alan Garny Date: Fri Apr 27 17:00:47 2012 +0200 Updated the user and developer documentations to reflect the release of Ubuntu 12.04 LTS. commit 012821a847526e7469095210ee4d9601ba26efcf Author: Alan Garny Date: Fri Apr 27 14:37:51 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 1156d3baaad707d0f89f88837c12db18e36c9986 Author: Alan Garny Date: Fri Apr 27 11:50:15 2012 +0200 Minor cleaning up (#57). commit 471ab8fde692378e15ebf9f3a473001ef8db24d2 Author: Alan Garny Date: Fri Apr 27 11:16:13 2012 +0200 Minor refactoring (#57). commit 8614257c5031ad8e68b31d670ea4e2af37e88528 Author: Alan Garny Date: Fri Apr 27 10:32:17 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit e4355a21f9abc861000e9d79e493b780e5bbf3a7 Author: Alan Garny Date: Thu Apr 26 18:24:38 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit efc4db505b1a9dde04f780990e436114bde9d1ea Author: Alan Garny Date: Thu Apr 26 18:12:45 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 3bd3a66b7c25e058af6b3a8977530cf510d387c8 Author: Alan Garny Date: Thu Apr 26 16:48:04 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit e7f892fdd13891e8530e00297949542bbf432fa1 Author: Alan Garny Date: Thu Apr 26 16:07:44 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 34ba7210e5eaf33d0e9ee91de6e130f17222cd39 Author: Alan Garny Date: Thu Apr 26 15:40:29 2012 +0200 Some minor cleaning up (#57). commit e4483b579e0c9fda1a3e0a8e7bc7ad9bb8da1d9d Author: Alan Garny Date: Thu Apr 26 15:01:32 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). commit 97c65f618289f99fb4c6d5fc676defae7be0af02 Author: Alan Garny Date: Thu Apr 26 14:08:53 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Also some minor cleaning up (#57). commit f2aa6bc8cb14cd419e59ca54badaeb5802c1c13e Author: Alan Garny Date: Wed Apr 25 17:47:22 2012 +0200 Some work on the CellML Annotation view for a CellML file (#78). Some minor cleaning up (#57). commit 47531531824430790c219fb0b1fad5fee176d7ce Author: Alan Garny Date: Wed Apr 25 16:22:11 2012 +0200 Working on the CellML Annotation view for a CellML file (#78). Also fixed a few memory leaks (oops!). commit f34a320ed12c2641f08e5248eb02b5df7e9ecebe Author: Alan Garny Date: Wed Apr 25 15:03:06 2012 +0200 Working on retrieving the components (#72). Not quite sure what can be done with MathML elements... commit 7d9c1e7343e5ecd0e17fa4cf4e4c67b9ebd5ca4a Author: Alan Garny Date: Tue Apr 24 18:32:44 2012 +0200 Working on retrieving the components (#72). commit 243c4d11e843cad8d4ba0aecbe0995f707d5b8e0 Author: Alan Garny Date: Tue Apr 24 17:52:58 2012 +0200 Working on retrieving the components (#72). commit 223ce3d394b950495a42c0e448d40fd5dec29c2d Author: Alan Garny Date: Tue Apr 24 17:06:50 2012 +0200 Working on retrieving the components (#72). commit 48e222e7781c39770c7bc608d1275ba9c480bdc2 Author: Alan Garny Date: Tue Apr 24 16:06:54 2012 +0200 Working on retrieving the components (#72). commit 0fb96afbe6a73c621a7972216aafb650926e620c Author: Alan Garny Date: Tue Apr 24 15:34:41 2012 +0200 Working on retrieving the components (#72). commit b09c9c5f05aae0f8016b0ec48b79c24bbc5bd421 Author: Alan Garny Date: Tue Apr 24 15:32:05 2012 +0200 Working on retrieving the components (#72). commit a0fbf98e7768ab98079fb976195f520be096b55e Author: Alan Garny Date: Tue Apr 24 15:04:52 2012 +0200 Done with retrieving connections (#72). commit 31fafdb4a6c4fb823826d6117b8f6a83631c86eb Author: Alan Garny Date: Tue Apr 24 14:47:10 2012 +0200 Some more work on retrieving connections (#72). commit 820a51fc4e9ab0bd51c3a100df8268f0af0d5951 Author: Alan Garny Date: Tue Apr 24 14:21:05 2012 +0200 Working on retrieving connection information (#72). commit 602ee49cef6fc9a408d73d3e9b3fc5326c5bd9f0 Author: Alan Garny Date: Mon Apr 23 17:25:36 2012 +0200 Done with retrieving groups (#72). commit dd914c80ab7a60301862cf550d50a61ced2efc20 Author: Alan Garny Date: Mon Apr 23 16:41:10 2012 +0200 Some more work on retrieving groups (#72). commit c3bf3c9366e14cbf22a3b33719a8b8e8ada97be5 Author: Alan Garny Date: Mon Apr 23 14:52:16 2012 +0200 Some more work on retrieving groups (#72). commit 2ef026086bf06c57b3e4b212ed6b1b8fb65c7cc0 Author: Alan Garny Date: Mon Apr 23 11:39:35 2012 +0200 Some more work on retrieving units (#72). commit ecbc960dea179d5bf834a9b8c463fd96a18d401f Author: Alan Garny Date: Fri Apr 20 19:31:12 2012 +0200 Some refactoring and cleaning up (#57 and #72). commit 00c6e8fe16be8fd69c72d8c6e4d0d8b5027ae259 Author: Alan Garny Date: Fri Apr 20 17:55:26 2012 +0200 Some more work on retrieving units (#72). commit 08ed5785c8e05c44eb56094b0fec7765c3153417 Author: Alan Garny Date: Fri Apr 20 16:22:12 2012 +0200 Working towards retrieving units information (#72). commit b59fd2a6d4227f5e75b12e8a6158e2c95340607b Author: Alan Garny Date: Thu Apr 19 17:43:22 2012 +0200 Minor refactoring (#57). commit 75e889474bd79e1cd56302b38dbe0f8bfd77e9a7 Author: Alan Garny Date: Thu Apr 19 16:13:25 2012 +0200 More work on retrieving imports (#72). commit e14173b4933c99efeec03bad48579941bd896030 Author: Alan Garny Date: Thu Apr 19 15:18:46 2012 +0200 Some work on retrieving imports from a CellML file (#72). commit 58a3816d5cd59825bef3c63e34f1901c7e61067d Author: Alan Garny Date: Thu Apr 19 14:58:03 2012 +0200 Resuming our work issue #72. commit eec5c697cb919b8fec176ce339aa671dc4c5f03c Author: Alan Garny Date: Thu Apr 19 11:52:13 2012 +0200 Minor cleaning up of the SingleCellSimulation plugin (#57). commit 0f4421af62c3bb0c64c42657f73e227c33414546 Author: Alan Garny Date: Wed Apr 18 15:44:37 2012 +0200 Fixed an issue regarding the retrieving of an indirect parameter assembly code index in the Computer plugin. commit 6936794405ff119e9dbd1b3b04e5338649245f4a Author: Alan Garny Date: Tue Apr 17 16:24:01 2012 +0200 Oops, forgot to undo something! commit fb091fdd2d76adc2e82273cd25e2f3efd4d7bcae Author: Alan Garny Date: Tue Apr 17 15:40:11 2012 +0200 Added another over-constrained test CellML file. commit 60db292053ee719dd9ff8922d52c280e4607eab8 Author: Alan Garny Date: Tue Apr 17 15:02:35 2012 +0200 Addressed the height issue of the graph panels in the SingleCellSimulation plugin. Closes #89. commit 4f468d0536cdce25a8fe3d757b866c51843cc3ed Author: Alan Garny Date: Tue Apr 17 11:48:15 2012 +0200 Added a MSVC debug version of the LLVM and CellML API (#87). commit ea51d8b6c39f16e73edfcfc3fa72fd65f9d13999 Author: Alan Garny Date: Tue Apr 17 09:47:43 2012 +0200 Moved some CellML-related files. commit 33f7e38b042345bc7f71163638b8a33f8a743b8d Merge: 11ef597ef 16f8b61da Author: Alan Garny Date: Mon Apr 16 10:17:01 2012 -0700 Merge pull request #88 from opencor/msvcPort Closes #87. commit 16f8b61daaa25e70bcdeab73744c56c1fda35818 Author: Alan Garny Date: Mon Apr 16 19:07:43 2012 +0200 Done with getting everything (incl. tests) working again on Mac OS X (#87). commit eb6ea874eeb195211b395f687a6da0bff508f7f7 Author: Alan Garny Date: Mon Apr 16 18:13:54 2012 +0200 Some more work on getting the Mac OS X version to build fine (#87). commit 4e173222f16a345283585cd333ed46b4cc7ea722 Author: Alan Garny Date: Mon Apr 16 17:57:46 2012 +0200 Some more Qt dependencies (as a result of upgrading to Qt 4.8?) for our Mac OS X build. commit 0b754c4aca17e7bc5ac6df0f574cd3ab4bc9389a Author: Alan Garny Date: Sat Apr 14 23:57:15 2012 +0200 Fixed something for Windows which got introduced when trying to get things to work on Linux again (#87). commit 61a692666f9b2dcb381c9fc29ddfd134233e83f5 Merge: 291efa311 22a8b03b3 Author: Alan Garny Date: Sat Apr 14 21:20:00 2012 +0200 Merge branch '\''msvcPort'\'' of github.com:opencor/opencor into msvcPort commit 291efa311534332085138cd4a706a96ac1d86831 Author: Alan Garny Date: Sat Apr 14 21:19:33 2012 +0200 Got everything (incl. tests) to work again on Linux (#87). commit 22a8b03b30e9688133a386b0e984c92ef3fd87b7 Author: Alan Garny Date: Sat Apr 14 18:43:04 2012 +0200 Minor cleaning up (#57). commit 4f45398f7922a009c2f27843341befd227ecc38c Author: Alan Garny Date: Sat Apr 14 14:45:28 2012 +0200 Fixed a couple of issues which got introduced as part of move to MSVC (#87). Can now run tests on Windows. commit 15dd9ddb110d27100801384a2b2628bf96db4150 Author: Alan Garny Date: Sat Apr 14 12:57:37 2012 +0200 Addressing the testing of plugins (#87). commit 71425f72064092efe03b07682faeee480ea9625b Author: Alan Garny Date: Sat Apr 14 00:31:24 2012 +0200 Minor update to the developer'\''s documentation. commit d3e1155cc3b66356297d99de9447b4be2d454964 Author: Alan Garny Date: Fri Apr 13 23:58:14 2012 +0200 Some more minor cleaning up (#57). commit 39bc3aee095f25585b471e80a70e144859c51b5c Author: Alan Garny Date: Fri Apr 13 23:55:39 2012 +0200 Minor cleaning up (#57). commit 2b415906bed20ac434316946a47981e214a0798d Author: Alan Garny Date: Fri Apr 13 19:01:25 2012 +0200 Can now run a CellML file using a MSVC version of OpenCOR (#87). Now, need to do quite a bit of tidying up! commit c14e96085a868d48c7ba829929a91c6b54155601 Author: Alan Garny Date: Fri Apr 13 13:50:34 2012 +0200 Minor improvement to our MSVC solution (#87). commit 94d352bb61f7d8e9f5e856acca57d35a5fb3a3bf Author: Alan Garny Date: Fri Apr 13 11:11:25 2012 +0200 Minor cleaning up (#57). commit dd354a79f1f2dd26fb2c6f278b3cb963c7656db6 Author: Alan Garny Date: Thu Apr 12 18:52:14 2012 +0200 Yet some more work on supporting MSVC (#87). commit bf19a36a69e8b5810f4cd821b15d248f9466d9c9 Author: Alan Garny Date: Thu Apr 12 18:37:01 2012 +0200 Some more work on supporting MSVC (#87). commit b826fc09561bbc05544e86e1a6eb0f4586e7ce7c Author: Alan Garny Date: Thu Apr 12 18:17:55 2012 +0200 Minor cleaning up (#57). commit 7bc05f0157aa67baeb7d71d096aef1a17abf8bdb Author: Alan Garny Date: Thu Apr 12 18:06:09 2012 +0200 Some minor cleaning up (#57). commit 471fcad3c1df89d734acbbdb5a0dbd9f3b6c8b48 Author: Alan Garny Date: Thu Apr 12 17:51:43 2012 +0200 Some more work on supporting (VERY annoying) MSVC (#87). commit b6bc7faf1e5766ca796198ff8822599cc5c6a2bc Author: Alan Garny Date: Thu Apr 12 17:36:54 2012 +0200 Minor cleaning up (#57). commit 566feff072e1d08dfba51c9b3dd574434462288e Author: Alan Garny Date: Thu Apr 12 16:44:46 2012 +0200 Some more work towards supporting MSVC (#87). commit 37126adb68793cdeb659a2ee517b0020a125cd46 Author: Alan Garny Date: Thu Apr 12 16:34:18 2012 +0200 Minor cleaning up (#57). commit cc32db2f302305ce64e56942f1a53a16f92ec431 Author: Alan Garny Date: Wed Apr 11 20:41:39 2012 +0200 Minor fix to our LLVM plugin'\''s CMake files. commit aed9d6b6c7d8fb8bcaf26b2949e4ceea663f334d Author: Alan Garny Date: Wed Apr 11 20:21:24 2012 +0200 Minor improvement to our LLVM plugin'\''s CMake files. commit a4378d375da14e2ef5f1358f79a881083b95007b Author: Alan Garny Date: Wed Apr 11 18:53:36 2012 +0200 Some minor cleaning up (#57). commit 3b2f023513482a1e4ea78390613ad4cf0c626aa0 Author: Alan Garny Date: Wed Apr 11 18:39:49 2012 +0200 Minor cleaning up (#57). commit 7b6815c5d4b5ad7bcbf3f223a2f3c31ee0573579 Author: Alan Garny Date: Wed Apr 11 18:32:17 2012 +0200 Added binaries for the LLVM plugin, as well as fixed an issue with its CMakeLists.txt.use file (#87). Also some minor cleaning up (#57). commit cdc29bcc2b837950012ad410f2ccfc8f16a70d87 Author: Alan Garny Date: Wed Apr 11 17:55:26 2012 +0200 Some more work towards supporting MSVC on Windows (#87). commit 59dfb6b551b9a21410c74d8264952a6497a2879d Author: Alan Garny Date: Wed Apr 11 16:49:14 2012 +0200 Some minor cleaning up (#57). commit a5f568489d7e5fa421f3d6a8b5cc8d05c353ebb7 Author: Alan Garny Date: Wed Apr 11 15:14:57 2012 +0200 Updated the developer'\''s documentation after the release of version 1.2.1 of the Qt SDK. commit f05a836a57505fb7f46d372bfe46d364ba49a06f Author: Alan Garny Date: Wed Apr 11 13:37:12 2012 +0200 Minor improvements to the CellMLSupport and SingleCellSimulation plugins (#57). commit bfa2327d4cae4b20683a33ff1df395056d405dbf Author: Alan Garny Date: Wed Apr 11 13:05:53 2012 +0200 Yet another minor improvement to our Computer plugin (#57). commit 5e21e3ed863f05f2f0634dea0d17af3fc3f04fa5 Author: Alan Garny Date: Wed Apr 11 13:03:37 2012 +0200 Minor improvement to our Computer plugin (#57). commit 15182cb7b60e68768dbb287a6c68216c68025fb1 Author: Alan Garny Date: Wed Apr 11 11:22:32 2012 +0200 Updated the CellML API to version 1.11 RC1 on Windows x86. commit 0e7f2d75ba2915d8106c0bc5290782a61ef23d56 Merge: 5cda756b0 4aced0233 Author: Alan Garny Date: Wed Apr 11 11:06:18 2012 +0200 Merge branch '\''msvcPort'\'' of github.com:opencor/opencor into msvcPort commit 4aced02334f0ca99654aba432826e6170e5e9763 Author: Alan Garny Date: Wed Apr 11 00:37:38 2012 +0200 Some minor cleaning up (#57). More work on building LLVM with MSVC (#87). Note: there is still one unresolved function in the Computer plugin test. commit 359eb213b73dc0dea780d1a42bbf1ba208b31bc8 Author: Alan Garny Date: Tue Apr 10 22:27:55 2012 +0200 Addressed a small with MSVC which would just hang up while trying to build an optimised version of LLVM (#87). commit 5cda756b0df0d12a507abf7aba8bb8f6efb54e6b Author: Alan Garny Date: Tue Apr 10 18:50:08 2012 +0200 Fixed a typo issue (#87). commit 519e0554c754791fa5cd62588422a560e61b4159 Author: Alan Garny Date: Tue Apr 10 18:45:38 2012 +0200 Can now build the LLVM plugin, but it'\''s probably full of things that we don'\''t need, so we will have to check what we can get rid of, if anything (since the current version of the plugin is quite big). Also, we don'\''t currently export any class/function, so again this will have to be done. Otherwise, I really wish it was possible to directly build a shared library version of LLVM using MSVC. I mean, I had to generate some X86-related .inc files for each platform we want to support and those are big! Some of them are identical from one platform to another (especially on Linux 32-bit and Linux 64-bit where the files are all identical), so we might want to optimise that a bit. commit fbdf0410c7560b3f7e361eeff9454b04243556e6 Author: Alan Garny Date: Tue Apr 10 15:12:28 2012 +0200 Starting to get a meaningful LLVM shared library (#87). commit f2305d11f9f03fea14add3cf42bb6a529e70ec9d Author: Alan Garny Date: Tue Apr 10 13:30:19 2012 +0200 Some more work towards building LLVM with MSVC (#87). commit 2151c048e78b505a18d0dff3e70f8e97c690cba1 Author: Alan Garny Date: Tue Apr 10 13:16:05 2012 +0200 Some more work on supporting the compilation of LLVM using MSVC (#87). commit f46c3110e381b5a0921781285ad0fc640a13e3a9 Author: Alan Garny Date: Tue Apr 10 10:05:50 2012 +0200 Some more work on supporting the build of LLVM using MSVC (#87). commit 1000bd4738707eca2fdfdeae45b0da6f52c3124f Author: Alan Garny Date: Tue Apr 10 09:59:32 2012 +0200 Updated LLVM'\''s config files and README file (#87). commit 7b3a0057d948504275b484d77d8794212d5e1cb7 Author: Alan Garny Date: Sun Apr 8 20:18:01 2012 +0200 Removed an unnecessary file (#87). commit 9b01abf4cf89d7b2b048e20fd8632176738df29a Author: Alan Garny Date: Sun Apr 8 19:42:26 2012 +0200 Some more work on supporting the compiling of LLVM using MSVC (#87). commit b4b5b9ecbbd91e3ad802e642dcaedb52a9f07d62 Author: Alan Garny Date: Sat Apr 7 23:32:59 2012 +0200 Minor update to our developer documentation (#87). commit ac2d0f3d0231fac54133964c318e354e0ba19a32 Author: Alan Garny Date: Sat Apr 7 20:56:38 2012 +0200 Working on building whatever we need from LLVM using MSVC (#87). Indeed, unlike with MinGW, it'\''s not currently possible (!!) to build a shared library version of LLVM, so... commit f858b9e6c8c9f6a79f66efa1ed5729a018b8958b Author: Alan Garny Date: Sat Apr 7 19:55:46 2012 +0200 Minor editing (#87). commit 5d810a60df2327b811666d1cb6f6b5e20e697483 Author: Alan Garny Date: Sat Apr 7 19:31:34 2012 +0200 Some more support for MSVC on Windows (#87). commit f6c912ffba952e1e172fe31ea082ea7d8c999603 Author: Alan Garny Date: Sat Apr 7 19:28:31 2012 +0200 Some work on building OpenCOR using MSVC on Windows (#87). commit c8b30c6370499c98495afb1098b613fa5427dcf3 Author: Alan Garny Date: Sat Apr 7 02:41:51 2012 +0200 Updated the CellML API binaries on Windows to use the MSVC2010 ones instead (#87). commit dc95f33d871bb2af52960b42cf9b6cabb6fbc3d8 Author: Alan Garny Date: Sat Apr 7 02:31:07 2012 +0200 Minor update to the LLVM readme file. commit dd4af3850ec14f88ecb137846f5b8d0f8c42b5fb Author: Alan Garny Date: Sat Apr 7 01:15:55 2012 +0200 Can now build and deploy the CellMLModelRepository plugin using MSVC on Windows (#87). commit 5956e64ec5cf88d226dbf8e7b75dd0c3aafb0a4d Author: Alan Garny Date: Sat Apr 7 01:10:29 2012 +0200 Got the plugins to become selectable. It was related to an issue we were trying to address as a result of using MSVC (#87). commit ef089fe521a689c965c24aa77e0068a306601a42 Author: Alan Garny Date: Sat Apr 7 00:03:54 2012 +0200 Improved support for MSVC (#87) as well as warnings generation. commit dff193a1322306833b302edea69cdb9086072e8f Author: Alan Garny Date: Fri Apr 6 19:52:00 2012 +0200 Can now build and deploy yet some more plugins with MSVC (#87). Mind you, none of the plugins are now selectable (including on Linux and Mac OS X)! Hmm... commit b4feaec8e401ab67e166df49f9547ff413425b5d Author: Alan Garny Date: Fri Apr 6 19:43:24 2012 +0200 Can now build and deploy a few more plugins with MSVC (#87). commit e1ae8f3edf7336a6f704e19ddb8e916a8e4d2f78 Author: Alan Garny Date: Fri Apr 6 19:36:57 2012 +0200 Fixed our main CMake files which should allow us to build once again on Linux and Mac OS X (#87). commit 0dca004059176a91ecee67dcda64c71f8a1adecf Author: Alan Garny Date: Fri Apr 6 18:17:34 2012 +0200 Can now build and deploy the Core plugin using MSVC on Windows (#87). Also fixed a minor issue as a result of using MSVC (#57). commit 0005bfc537a3f5e5c1888a71730b7b5c53ad549c Author: Alan Garny Date: Fri Apr 6 15:34:31 2012 +0200 Minor improvement with regards to Windows deployment (#87). commit af82de4ec44ad96d68c2b7139e0c0cc82245fd98 Author: Alan Garny Date: Fri Apr 6 15:19:40 2012 +0200 Some more work on building OpenCOR with MSVC on Windows (#87). commit 24435884ecf1515cc82a0aa440187e7c9a61c48b Author: Alan Garny Date: Fri Apr 6 13:41:15 2012 +0200 Some more work towards building OpenCOR with MSVC on Windows (#87). commit a50af0fc07e8fc7e3ba5690ecf8509b51a1dbcf3 Author: Alan Garny Date: Fri Apr 6 13:35:12 2012 +0200 Minor cleaning up (#57). commit 74dcabb459955d02119e74a664462673940fa263 Merge: 02c1d4183 2bf67926a Author: Alan Garny Date: Fri Apr 6 13:33:59 2012 +0200 Merge branch '\''msvcPort'\'' of github.com:opencor/opencor into msvcPort commit 02c1d418308c6e757a0c97442950de46e117cfb9 Author: Alan Garny Date: Fri Apr 6 13:31:35 2012 +0200 Can now build and deploy OpenCOR'\''s shell (i.e. OpenCOR without any of its plugins). There is still a lot of work to be done, but progress is at least being made... (#87) commit 2bf67926a8535b1c4691e218bb33bf680c576702 Author: Alan Garny Date: Fri Apr 6 13:31:35 2012 +0200 Can now build and deploy OpenCOR'\''s shell (i.e. OpenCOR without any of its plugins). There is still a lot of work to be done, but progress is at least being made... commit 69a200d0f98563de1c8502e1d96d7467cb674f87 Author: Alan Garny Date: Fri Apr 6 11:21:43 2012 +0200 Support deployment using MSVC on Windows. commit bde2783054d48a43a12f2c344de1b03e67f20594 Author: Alan Garny Date: Fri Apr 6 00:28:15 2012 +0200 Minor updates to the developer documentation. commit b93e897aa534576c148568900c32e9dbb5260823 Author: Alan Garny Date: Thu Apr 5 23:28:23 2012 +0200 Minor update to the developer documentation. commit 16fc4c3ba0349874881820f7505dae5035b31a7a Author: Alan Garny Date: Thu Apr 5 21:46:34 2012 +0200 Minor improvement to the developer documentation. commit 20846ed38d4a940de6923fa4b10994f6da63381d Author: Alan Garny Date: Thu Apr 5 21:41:14 2012 +0200 Some work on trying to support MSVC on Windows. Indeed, the CellML API is built using the latest version of MinGW which is causing problems with OpenCOR on Windows which is built using an older version of MinGW (the one shipped with Qt though). So, let'\''s see whether we can get OpenCOR to build using MSVC 2010. This would make it easier for the CellML API guys to support Windows... commit 11ef597ef6afa4162d9f02d12b50234560f3e6e0 Author: Alan Garny Date: Thu Apr 5 20:38:02 2012 +0200 Minor MSVC-related improvement. commit 1e13010939c4951e0d3d0395e3918cb30117fc09 Author: Alan Garny Date: Thu Apr 5 15:21:29 2012 +0200 Minor update to the developer documentation. commit 14bebc15b04fb34310acd25b14761cd01a472c70 Author: Alan Garny Date: Thu Apr 5 00:57:21 2012 +0200 Minor update to the developer documentation. commit 4a5c1b96acf845817b548d472ec6d0419401848d Author: Alan Garny Date: Wed Apr 4 14:22:48 2012 +0200 SingleCellSimulationView plugin: now, keep track of the size of each graph panel, and of the output. Closes #86. commit 6bf15ab03dd31966627dc0b809dccdf70593a447 Author: Alan Garny Date: Wed Apr 4 13:49:08 2012 +0200 Minor cleaning up (#57). commit a9394e250078a59de5b7f8c2faaca3cfa6de125a Author: Alan Garny Date: Wed Apr 4 13:11:30 2012 +0200 Some minor refactoring (#57). commit f149d83e7d7b97d541ddafb99c6d7542f5452b39 Author: Alan Garny Date: Wed Apr 4 13:08:37 2012 +0200 Improved '\''support'\'' for the Cortessa et al. 2006 model. commit 0882b6c1cb34d9ba019195e8f198101fd1c54b9b Merge: 4f9c14f2e 3f0751e5e Author: Alan Garny Date: Wed Apr 4 11:06:09 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 3f0751e5ecc751ff67e1be671ac563c82ff0ef94 Author: Alan Garny Date: Wed Apr 4 09:29:53 2012 +0200 Fixed a couple of ObjRef related issues (as per instruction given at https://tracker.physiomeproject.org/show_bug.cgi?id=3246). commit 60688a46d370fec50620ba26e05dfbe275837237 Author: Alan Garny Date: Tue Apr 3 19:24:17 2012 +0200 Cleaned up some code and fixed a couple of memory leaks. commit 8f2a678e72c5742f8ccde87055315048fc5bd4c1 Author: Alan Garny Date: Tue Apr 3 18:23:51 2012 +0200 Added '\''support'\'' for the Cortessa et al. 2006 model in our SingleCellSimulationView plugin. commit 875004c3b838b096c2cd3c7f09050a563d39465f Author: Alan Garny Date: Tue Apr 3 18:23:04 2012 +0200 Some minor cleaning up and minor fix to our CellML File Manager. commit 07be681e1d529184fd97857b111513b52e498c65 Author: Alan Garny Date: Tue Apr 3 11:13:17 2012 +0200 Minor cleaning up (#57), as well as added support for double precision to the remainder and quotient functions (closes #84 and closes #85). commit 4f9c14f2e3b58485ff8ad8b1f4165826687cf651 Merge: d5f5e5ac1 12074d2c3 Author: Alan Garny Date: Tue Apr 3 07:53:42 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 12074d2c341a0188637c17c7b61fbc501156b5fd Author: Alan Garny Date: Mon Apr 2 19:12:26 2012 +0200 Some more work on retrieving information from a CellML file (#72). commit 898c5f2a8c36731a71ca562f36b4e8319a295903 Author: Alan Garny Date: Mon Apr 2 18:23:42 2012 +0200 Some work on retrieving information from a CellML file (#72). commit 7d77f61e57ef1e3f4c3e4f7189165900e0b9a172 Author: Alan Garny Date: Mon Apr 2 13:10:28 2012 +0200 Minor refactoring (#57). commit 28a267a3fb76b162d80d05659d4e73fa420c5cae Merge: 40f6b056a f25eb27c6 Author: Alan Garny Date: Mon Apr 2 10:01:19 2012 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit d5f5e5ac1347dc1e2e83c29d3b35d16818d3b4ba Author: Alan Garny Date: Sat Mar 31 18:53:49 2012 +0200 Some minor cleaning up (#57). commit f25eb27c63d2115e8c08d816b72a96fefc148674 Author: Alan Garny Date: Sat Mar 31 12:03:24 2012 +0200 Some work on our CellMLAnnotationView plugin (#78). commit b65bbffcd6a97e3f30adfb73b273ac874777e2f3 Author: Alan Garny Date: Fri Mar 30 22:49:23 2012 +0200 Improved the speed of our Viewer plugin (and improved QtMmlDocument, a third-party class we use, in the process). Closes #83. commit 40f6b056ad6bf5247d990bc2a9e12c8e52ba9b1e Author: Alan Garny Date: Fri Mar 30 16:02:32 2012 +0200 Minor cleaning up (#57). commit 1f238068b4c29239707950fb13a9093aff2ed1ce Author: Alan Garny Date: Fri Mar 30 15:21:26 2012 +0200 Some additional cleaning up (#57). commit fe6b7eb379e83d38108dd8808542b198b1f80de7 Author: Alan Garny Date: Fri Mar 30 15:15:34 2012 +0200 Working on some cleaning up (#57). commit f761ef6a8961963ae9f3e7f81df65b6761d664e8 Author: Alan Garny Date: Fri Mar 30 14:23:18 2012 +0200 Minor cleaning up of our Viewer plugin (#57). commit 74d267fe1b23307e09ef09392ade4cb36cddb0cd Author: Alan Garny Date: Fri Mar 30 14:19:52 2012 +0200 Some work on our CellMLAnnotationView plugin (#78). commit bee05110483b68502d8a227eca44332a98868aad Author: Alan Garny Date: Fri Mar 30 14:19:13 2012 +0200 Some minor cleaning up (#57). commit 6efbdd993566b98a278017866ffe7e5d844e71c2 Author: Alan Garny Date: Fri Mar 30 11:08:18 2012 +0200 Minor improvement in a casting (#57). commit abb95aa995e1205de729d3232acfa3e4fd8b23cd Author: Alan Garny Date: Fri Mar 30 11:00:42 2012 +0200 Some refactoring of our FileBrowser plugin. commit 5ba5b1d8239e378d98cd3574cb9b3ea72dd16909 Author: Alan Garny Date: Fri Mar 30 10:47:00 2012 +0200 Some refactoring of our FileOrganiser plugin. commit 89559d1c9176b70c1e1e813ab05cc4a762838952 Author: Alan Garny Date: Thu Mar 29 18:38:10 2012 +0200 Some more refactoring (#57). Also some GUI improvement to our CellMLAnntationView plugin (#78). commit 461d7eb5f48b4e9857407269784f60a332677665 Author: Alan Garny Date: Thu Mar 29 18:07:13 2012 +0200 And yet some more refactoring... (#57) commit 01b8db317c15362ee7ffe9bd40d4ced32ed591a0 Author: Alan Garny Date: Thu Mar 29 18:01:37 2012 +0200 On a roll (with refactorisation) (#57). commit 66f13579729fb7241ab90e8584c2feb17bd86615 Author: Alan Garny Date: Thu Mar 29 17:54:57 2012 +0200 In refactory mode, so some more... (#57) commit fa3887504ee248199227caadaf9ca285a57aa15b Author: Alan Garny Date: Thu Mar 29 17:29:18 2012 +0200 Some refactoring (#57). commit 7c2f779c47db259f559d5c25e28c831013f464b9 Author: Alan Garny Date: Thu Mar 29 17:05:14 2012 +0200 Some more GUI improvement to our RawCellMLView plugin (#16). commit 639f3568b5bd9ab8affd46c66c9d2efddbf428f9 Author: Alan Garny Date: Thu Mar 29 16:14:48 2012 +0200 Slight GUI improvement to our RawCellMLView plugin (#16). commit 2d6245e2f6e5a1ffd20faf5819a2c3568b6def98 Author: Alan Garny Date: Thu Mar 29 15:50:37 2012 +0200 Some refactoring and cleaning up of our CommonWidget class (#57). commit be8666b3357feac1ae20c39c4eb78359a06be2c7 Author: Alan Garny Date: Thu Mar 29 14:35:58 2012 +0200 Improved on our CommonWidget solution to issue #82. commit 5d12d3418ae82813d7fc5cedde16f21d5c4deca1 Author: Alan Garny Date: Thu Mar 29 11:56:25 2012 +0200 Working on making sure that CommonWidget uses the right colour to draw its border when docked (#82). commit 9aeaf3ab2032bc3b663e94452007534577599056 Author: Alan Garny Date: Thu Mar 29 00:38:08 2012 +0200 Shouldn'\''t work late at night! In other words, reverting the previous commit... commit 280b7230fc6385d06d6b9987e18186580c1a4bbc Author: Alan Garny Date: Thu Mar 29 00:25:18 2012 +0200 Some minor refactoring (#57). commit 939d0fbab93155654a6fa0b83caca7ca1d0cd715 Author: Alan Garny Date: Wed Mar 28 17:51:02 2012 +0200 Minor comment. commit 1c20726eb3cb54a14d8342497409e78c67905f1f Author: Alan Garny Date: Wed Mar 28 17:14:36 2012 +0200 Minor improvement to our SingleCellSimulation view plugin. commit 39f98c63fb709dd382b31d19b31577a67ce4f934 Author: Alan Garny Date: Wed Mar 28 16:58:03 2012 +0200 Improved the rendering of a line in some places. commit 2c2a126365c2c553335752516cb15ce87336adc6 Author: Alan Garny Date: Wed Mar 28 15:46:34 2012 +0200 Minor cleaning up (#57). commit aec4bcf3fcb3d0b0b47d87fc99d77dc6a53081e2 Author: Alan Garny Date: Wed Mar 28 14:18:46 2012 +0200 Made sure that whatever relies on the system'\''s palette gets updated whenever the system palette gets changed. commit bf2c8c5958741f4875e6dd02105f6e474299806b Author: Alan Garny Date: Wed Mar 28 13:35:52 2012 +0200 Improved the progress bar in our SingleCellSimulation view plugin. commit 04d2a48f8ce25927f45a71814de72862e95732b9 Author: Alan Garny Date: Tue Mar 27 20:31:33 2012 +0200 Some minor refactoring and cleaning up (#57). commit b54e913d9680777f84e3da9891491fe42af7a305 Author: Alan Garny Date: Tue Mar 27 19:54:53 2012 +0200 Some minor refactoring (#57). commit c89934dde837da6b17f4918156ff6cfa39896819 Author: Alan Garny Date: Tue Mar 27 18:59:29 2012 +0200 Minor improvement to our CellML annotation view (#78). commit 11e78a89f1df8f79031d7255898e90495df85776 Author: Alan Garny Date: Tue Mar 27 18:29:37 2012 +0200 Working towards retrieving all the units, components, groups and connections from a CellML file (#72). commit 97abbe9531ae61e7e4176d905a4decf48493ffb7 Author: Alan Garny Date: Tue Mar 27 18:27:55 2012 +0200 Closes #81. The issue was indeed that we were resetting our CellML object while we shouldn'\''t. commit c46c9990c62a900c3d2f30fa9e37d8b4e21facbb Author: Alan Garny Date: Tue Mar 27 16:52:39 2012 +0200 Some work on our CellML annotation view (#78). Some minor cleaning up (#57). commit 98210c56f0f0ec4bc45a00da412e14479724f816 Author: Alan Garny Date: Tue Mar 27 15:29:00 2012 +0200 Some work on our CellML Annotation view (#78). commit 98523b546deed6705a536ffe5dc9b3a8af41c45b Author: Alan Garny Date: Tue Mar 27 14:37:53 2012 +0200 Some minor refactoring (#57). commit bf1cde9412314ac8061d25c0580b887ab3f515b3 Author: Alan Garny Date: Mon Mar 26 20:22:59 2012 +0200 Closes #80. commit 1c594a90f299749382591e2795cdc9e7e5c39033 Author: Alan Garny Date: Mon Mar 26 19:12:36 2012 +0200 Minor improvement to our SUNDIALS plugin. commit 92ff99cbe5dc05bb965d817a8042bcd620604b6f Author: Alan Garny Date: Mon Mar 26 18:56:38 2012 +0200 Upgraded the SUNDIALS library to version 2.5.0 from 2.4.0. commit 713494b8d6909a2279afbf0de6982616035936ec Author: Alan Garny Date: Mon Mar 26 18:05:35 2012 +0200 Some work on our CellML Annotation view (#78). Some minor cleaning up (#57). commit fe0553ffb5e8758b5678728737ca300efbc5e4f0 Author: Alan Garny Date: Mon Mar 26 17:28:28 2012 +0200 We have upgraded to Ubuntu 11.10, so updated the developer'\''s documentation. commit 1d68a300b0150b16694cc55cd93e5987b98cf360 Author: Alan Garny Date: Mon Mar 26 17:27:17 2012 +0200 Minor cleaning up (#57). commit aa1118c795c0277396b507ee58b5f1eb3e91448c Author: Alan Garny Date: Fri Mar 23 21:50:41 2012 +0100 Made the views from our RawCellMLView and RawView plugins accept the focus. commit ac5450fefadaa5b5697ede89b243eb1f154bc9e7 Author: Alan Garny Date: Fri Mar 23 21:05:04 2012 +0100 Minor improvement to our central widget and some cleaning up (#57). commit 3fd543130ac3bb5dfb35158143b038667910b8d2 Author: Alan Garny Date: Fri Mar 23 19:56:57 2012 +0100 Keep track of the height of both the viewer and the editor in our RawCellMLView plugin (#16). commit 01fcf423895c0286eb86d4f99e3db5b054480aa9 Author: Alan Garny Date: Fri Mar 23 19:23:51 2012 +0100 Some work on our RawCellMLView plugin (#16). commit 0667e834558a282fce00abc7eec3a0e63cec503b Author: Alan Garny Date: Fri Mar 23 19:23:02 2012 +0100 Some more minor cleaning up (#57). commit 7968ea829b2034c67d65b91d211c4ba2bfcebdc0 Author: Alan Garny Date: Fri Mar 23 19:22:26 2012 +0100 Some minor cleaning up (#57). commit f9a9b6b02acc1b32192c7de4a05eddd7ea62f782 Merge: 78593618c 61627ca36 Author: Alan Garny Date: Fri Mar 23 09:34:24 2012 -0700 Merge pull request #79 from mirams/master Re-implement build on oneiric function. commit 61627ca36312d4e76b1837d9832ce737b77927ae Author: Gary Mirams Date: Fri Mar 23 15:42:08 2012 +0000 re-implement new #include for oneiric commit 78593618ce2f5894e19d52b9a1c169923dfc2bbd Author: Alan Garny Date: Fri Mar 23 15:54:29 2012 +0100 Addressed a small bundling issue on Mac OS X with regards our RawCellMLView plugin (#16). commit fb8b08c5a7b7b54f2f7ee5f4ed7be785fe61f0f7 Author: Alan Garny Date: Fri Mar 23 15:50:25 2012 +0100 Some work on our RawCellMLView plugin (#16). commit bef2e41a3725103ba9c32526af2799941e03fb2e Author: Alan Garny Date: Fri Mar 23 15:38:23 2012 +0100 Minor cleaning up (#57). commit de1f2f1785ec4647ac29844f41d4f22fccfd1933 Author: Alan Garny Date: Fri Mar 23 15:36:59 2012 +0100 Worked some more on our RawCellMLView plugin (#16). commit b704b0575050aec37d4ce2a689b0e7855fdd8934 Author: Alan Garny Date: Fri Mar 23 15:20:23 2012 +0100 Some work on RawCellMLView plugin (#16). commit f5746adc7c1df13172a82090a3e64ebf3191dc3d Author: Alan Garny Date: Fri Mar 23 15:06:48 2012 +0100 Some work on our RawView plugin (#76). commit b599dfdd8a8d0605f9d0b1052b19c05bd35e4fc0 Author: Alan Garny Date: Fri Mar 23 14:42:47 2012 +0100 Some work on our CellMLAnnotationView plugin (#78). commit 9b6e342cfb8095b79bbbd27b02d2fd7854864d22 Author: Alan Garny Date: Fri Mar 23 14:40:30 2012 +0100 Some work towards our RawCellMLView plugin (#16). commit c317a18de5ee6bac07e7f8f1565537d74966878b Author: Alan Garny Date: Fri Mar 23 14:39:04 2012 +0100 Some more minor cleaning up (#57). commit 9958da08f9ac22cd405f8604ffdac5a687fa2848 Author: Alan Garny Date: Fri Mar 23 14:34:35 2012 +0100 Some minor cleaning up (#57). commit ac13ca2767383d9c17aba8c72fb2bd338c7c7293 Author: Alan Garny Date: Fri Mar 23 14:25:40 2012 +0100 Some work towards our RawView plugin (#76). commit 50561886e9b2d7fe79e483219ae3087ae44b39e3 Author: Alan Garny Date: Fri Mar 23 13:41:40 2012 +0100 Minor cleaning up (#57). commit 74a563c7394d47b4f3e6bea1d99af1b2bafe17a8 Author: Alan Garny Date: Fri Mar 23 13:28:17 2012 +0100 Some refactoring (closes #75 and closes #76). commit 7edc6bcaaeaeaec620053e85ed6f7d6c11e4b8ef Author: Alan Garny Date: Fri Mar 23 10:41:18 2012 +0100 Addressed a small issue with trying to run an '\''unsupported'\'' model (see #69). commit 3860bcdfe32e38d1f963e24893ab64115277f9a6 Author: Alan Garny Date: Fri Mar 23 10:28:49 2012 +0100 Some minor cleaning up (#57). commit 06047d567b03698673cb0794c4a64257b67a1e41 Author: Alan Garny Date: Thu Mar 22 15:59:37 2012 +0100 Keeps track of the active graph panel (closes #70). commit c7e8be03fbbf2a28888a6b5dad33585c14dc2339 Author: Alan Garny Date: Wed Mar 21 17:37:19 2012 +0100 Argh, the joy of developing a cross-platform application... commit 4426c8511f8dfbe1357a594dfbd50f76d6b8c37e Author: Alan Garny Date: Wed Mar 21 17:13:56 2012 +0100 Minor cleaning up (#57). commit 4b71215a1a2bd1d267bfce3fc9ba786dfdc90a68 Author: Alan Garny Date: Wed Mar 21 01:34:11 2012 +0100 Address an issue with #includes that were C-like rather than C++ like (#69). commit 3c2ccb490d88b3990f075b9ea6e7edaad37ce3d0 Author: Alan Garny Date: Tue Mar 20 13:46:19 2012 +0100 Added support for the Luo-Rudy 1991 model in our SingleCellSimulation plugin. commit 6fb49c02712f9d00b3bfbedbedbe17a8db02ac1f Merge: 3c4c8767c ce3ef39b3 Author: Alan Garny Date: Tue Mar 20 00:36:53 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit ce3ef39b3db079af2c23e7d7dda29b5de3f5b66e Merge: 56a9204e4 e7d7e39cd Author: Alan Garny Date: Mon Mar 19 16:36:37 2012 -0700 Merge pull request #69 from mirams/master Get a build working on Oneiric Ocelot commit e7d7e39cd8325337c08a2d2a26a107652497e0e6 Author: Gary Mirams Date: Mon Mar 19 17:33:51 2012 +0000 Try and get a build working on Oeneiric using ubuntu packages for qt-sdk commit 3c4c8767c0801f1a3dbbd188edcd3894a84288d8 Author: Alan Garny Date: Mon Mar 19 14:31:50 2012 +0100 Minor cleaning up (#57). commit 56a9204e45146f2f11201f2564d594d3ad1371f7 Author: Alan Garny Date: Sun Mar 18 23:50:33 2012 +0100 Removed our '\''support'\'' for events / reset rules since I don'\''t currently believe that they are '\''properly'\'' handled by the CellML API (see https://tracker.physiomeproject.org/show_bug.cgi?id=3238). commit f2fa8dfdca8fb67d6d7e99e1dbf4ceb79385ae17 Author: Alan Garny Date: Sun Mar 18 23:40:29 2012 +0100 Some minor cleaning up of our SingleCellSimulation plugin (#57), as well as improvement to our IDA solver plugin (#65) by updating the old states/rates after each internal step of the IDA solver and by making sure that we retrieve the initial states/rates for the model (following the call to IDACalcIC()). commit d70f1609c61db673b3917aa97475e2657e2cb24c Author: Alan Garny Date: Sun Mar 18 14:48:31 2012 +0100 Fixed the issue with the IDA solver working in some cases and not others. That was a stupid issue of arrays being randomly initialised (classic!). commit f0f435fe971789cc8964b9f6b798b539febacab1 Author: Alan Garny Date: Sun Mar 18 11:45:55 2012 +0100 Minor editing of comments. commit 27e82362153da1d0ae17c3a8e69e1bd5a1883349 Author: Alan Garny Date: Sun Mar 18 11:39:10 2012 +0100 Some minor cleaning up (#57). commit fcda74e1bdf786d5507692faacc747d949c9244a Author: Alan Garny Date: Sun Mar 18 11:27:26 2012 +0100 Added '\''support'\'' for another DAE model. Also addressed an '\''issue'\'' with CCGS generating a rootfind_ call in the case of some DAE models. Not sure what this call all about and it'\''s not something that we currently support for the initializeConstants() function, so we remove those calls (since CCGS don'\''t allow us to customise things in that respect...). commit 8eca66a81b428665335a223ad0768d9256a55f17 Author: Alan Garny Date: Sun Mar 18 09:19:06 2012 +0100 Updated the Windows version of the CellML API to the nightly build from 14 March 2012. Indeed, some more work has been done on trying to make the API faster on that platform. However, a very quick test revealed no improvement with regards to its speed...!? commit c1349cc81617819d02fd82dfb49462ae5e9c732d Author: Alan Garny Date: Sun Mar 18 02:11:30 2012 +0100 Some minor editing for our solver plugins. commit 1dba04792dc56be0bd4625ba29d5b4577d3fd7dc Author: Alan Garny Date: Sun Mar 18 01:38:05 2012 +0100 Added '\''support'\'' for another DAE model. commit 4fe4f58579a0e85f6988ee5401e531965de8c8dc Author: Alan Garny Date: Sun Mar 18 01:33:48 2012 +0100 Working some more on our IDA solver plugin (#65). Was able to solve a DAE model, but not another...?! commit ee6d847f0d35ed3abc5b25fd9013ff6cb98c1c23 Author: Alan Garny Date: Sat Mar 17 16:54:46 2012 +0100 Minor cleaning up (#57). commit 09b25a0d85ecbd0d527ec4ddb62a59a878da4fcf Author: Alan Garny Date: Sat Mar 17 16:34:42 2012 +0100 Some cleaning up (#57). commit 6c3d814884f9a7951af956da5e8b234d35058ae7 Author: Alan Garny Date: Sat Mar 17 16:25:52 2012 +0100 Some minor work on our IDA solver plugin (#65) and some minor cleaning up (#57). commit 562d917e64f5abfc82adf49dd3f242b380d8e7ae Author: Alan Garny Date: Sat Mar 17 16:13:17 2012 +0100 Some minor refactoring (#57). commit c008b571126174109b7d1dd98fb752e5569139ac Author: Alan Garny Date: Sat Mar 17 16:09:40 2012 +0100 Some more work on our IDA solver plugin (#65). commit f26c99c47a5e575bb3a923c5d0269f318562cb5c Author: Alan Garny Date: Sat Mar 17 11:18:46 2012 +0100 Working on our IDA solver plugin (#65). commit 4ef4d21d111d54a1699a62b186596419ec07fbee Author: Alan Garny Date: Sat Mar 17 10:47:10 2012 +0100 Some cleaning up of our solver code (#57). commit 4c324a1ebe8a5e062b7dde406b8ea9bb7441d904 Author: Alan Garny Date: Wed Mar 14 11:41:45 2012 +1300 Minor cleaning up (#57). commit fdd9dad039c6cb773f6c0c61b2138be88c537260 Author: Alan Garny Date: Tue Mar 13 09:22:47 2012 +1300 Added the CellML Workshop 2012 presentation as a dissemination document. commit df7eb44a2567611a0ab68928fddc64c2b368612c Author: Alan Garny Date: Sun Mar 11 19:28:07 2012 +1300 Some refactoring (#57) by moving some GUI Interface methods to the Core Interface. commit 27d3c1b73342e248428023d3bfb2308e7911c3cc Author: Alan Garny Date: Sun Mar 11 18:31:42 2012 +1300 Some minor cleaning up (#57). commit e6ea792a4ea745eefc1483d5f0c0d9da71aa74a4 Author: Alan Garny Date: Sun Mar 11 15:15:02 2012 +1300 Minor update to the user documentation. commit eda93643b6c424c5f999cc01a3067615e232a549 Author: Alan Garny Date: Sun Mar 11 13:57:44 2012 +1300 Minor update to the README.txt file for building the LLVM shared library. commit f2faa43a447b3354d897b60d67aa0aaf61a5b9f5 Author: Alan Garny Date: Sat Mar 10 21:43:27 2012 +1300 Some more work for the CellML workshop by allowing '\''fast'\'' plotting of simulation data. commit 3c4a6dd31463b35c79d732b66866590e7a9a1385 Author: Alan Garny Date: Sat Mar 10 21:33:09 2012 +1300 A bit more work for the CellML workshop by plotting the simulation data as they are being computed. It'\''s very slow, but good enough to demonstrate things. commit 8c57016133fcdf2b016d95f475d05dc505ac45a8 Author: Alan Garny Date: Sat Mar 10 00:59:57 2012 +1300 Update the progress bar in the single cell simulation view. Need to make the progress visible though (when a long simulation is to be run)... commit 09026b6a96077d74c19e0024839ce7c93a6a1128 Author: Alan Garny Date: Sat Mar 10 00:44:36 2012 +1300 Some minor refactoring for the CellML workshop (#57). commit 706a424393ab551b8a3519b3c0fea137a85ba97a Author: Alan Garny Date: Sat Mar 10 00:05:58 2012 +1300 A bit of refactoring (#57) in preparation for the forthcoming CellML workshop. commit dd05bcb396a15f3988e2ec4483f8b7e6b19d0e9c Author: Alan Garny Date: Fri Mar 9 18:08:25 2012 +1300 Slightly improved the speed of our CVODE solver. commit bdd2edf890d7990c3ded9f2ff9a56cab519d1c88 Author: Alan Garny Date: Fri Mar 9 17:56:31 2012 +1300 Minor improvement to our CVODE solver (#64). commit 016141b76b786a54a6741017e96748b84ae6b5f9 Author: Alan Garny Date: Fri Mar 9 17:51:13 2012 +1300 Can now get the CVODE solver to work (#64), but might be able to optimise it a bit. commit 074aef8abda2b23f8c65358fb8c598c483e0f0c8 Author: Alan Garny Date: Fri Mar 9 16:33:01 2012 +1300 Some more work on the CVODE solver (#64). commit d5bb05d52aef02bf4240b4daac8366e1ac0ca7e5 Author: Alan Garny Date: Fri Mar 9 15:46:09 2012 +1300 Working some more on the CVODE solver (#64) and on our solver interface (#62). commit 32d5943e6c2503e0fc10e6b92c3666c96c3972ba Author: Alan Garny Date: Fri Mar 9 14:24:59 2012 +1300 Some further work towards the CVODE solver (#64). commit e617474a53bd19fa5b410584f0c9c3a53f7f53eb Author: Alan Garny Date: Fri Mar 9 12:09:42 2012 +1300 Setting a few CVODE parameter values in our SingleCellSimulation plugin so we can later on test our CVODE solver (#64). commit 9eea5c34b6dd765ffb00a7ee7a72357c1531e608 Author: Alan Garny Date: Fri Mar 9 11:55:25 2012 +1300 Set stricter default tolerances for the CVODE solver (#64). commit e21efa5f66e170b12b41b1bbe3af1a2164dd2693 Author: Alan Garny Date: Fri Mar 9 11:47:32 2012 +1300 Working some more on the CVODE solver (#64). Some minor cleaning up too (#57). commit 8a5ab738cb522a76c68c47cab3955864c30e6446 Author: Alan Garny Date: Fri Mar 9 10:20:06 2012 +1300 Started work on a CVODE solver (#64). (Right now, it'\''s just a copy/paste of the Forward Euler solver.) commit 681180bbfee289e9c553742b3f4cdfd0d31db866 Author: Alan Garny Date: Fri Mar 9 09:35:07 2012 +1300 Some minor cleaning up and refactoring (#57). commit 96fa1115f6c26e0ff748ec6081c5f4aa99148712 Author: Alan Garny Date: Thu Mar 8 20:17:36 2012 +1300 Some minor cleaning up (#57). commit 0153db41239d0b2c43a01fb277995dc1a6a1f612 Author: Alan Garny Date: Thu Mar 8 20:16:14 2012 +1300 Can now run a CellML file using our Forward Euler solver plugin. Closes #63. commit 6b2fb6e6f5ea25fa0d7663f571472d4d8f04a22f Author: Alan Garny Date: Thu Mar 8 16:55:31 2012 +1300 Minor update to the developer documentation. commit 3cc7169e744c6bcb55fc0d63dbd2145d79a51368 Author: Alan Garny Date: Thu Mar 8 10:43:31 2012 +1300 Make the SingleCellSimulation plugin depend on the CoreSolver plugin. commit 0b760973edb48abf6b57ba9f1e344029bd1e6c15 Author: Alan Garny Date: Thu Mar 8 10:41:11 2012 +1300 Working towards #62 and #63 (i.e. solvers and ODE solvers in particular). commit 6814fa03d11be2e9c6c6cff2f790235e01237205 Author: Alan Garny Date: Thu Mar 8 10:31:09 2012 +1300 Added a dependency on the CoreSolver plugin for the CoreSimulation plugin. commit f5cd9a5a42110bf10ae2816d29fdf56cd526280b Author: Alan Garny Date: Tue Mar 6 19:39:06 2012 +1300 Some minor refactoring (#57). commit 27a49b039e6494e2ad02119c995a2ec8ad436ade Author: Alan Garny Date: Tue Mar 6 19:32:42 2012 +1300 Output (for testing/debugging purposes) the name and type of properties supported by a solver. commit fc340c874425710253959ffe6e1379c33fff72cd Author: Alan Garny Date: Tue Mar 6 19:17:57 2012 +1300 Some more work towards #62 and #63. Now, we can specify properties that can be modified in a solver. commit 8d14c46b3c8e3382672e7e0d68f0d4e4206f6e99 Author: Alan Garny Date: Tue Mar 6 17:09:12 2012 +1300 Some cleaning up (#57) for #62 and #63. commit 0a124658daf7e099cdc5abe605fe116a1eaf372f Author: Alan Garny Date: Tue Mar 6 16:53:45 2012 +1300 Getting there with #63. commit c560a99ae2790d655ac171c3249d469e5e3865b8 Author: Alan Garny Date: Tue Mar 6 15:20:56 2012 +1300 Working some more on #62 and #63. commit f30285e94be51f0829f424d4d90952c21ed12b51 Author: Alan Garny Date: Tue Mar 6 14:37:33 2012 +1300 Working towards #62 and #63. commit 696d85dbf6a1cd4b042b0a251a5b7a0e6afa5a3d Author: Alan Garny Date: Tue Mar 6 12:37:37 2012 +1300 Some minor cleaning up (there is no CellMLSupport plugin tests as such, so...; see #57). commit a05e0a2e81b4b4995b58634b16c9072be255147f Author: Alan Garny Date: Tue Mar 6 12:35:10 2012 +1300 Working some more towards #62 and #63. commit eba0218d1eba6398d73f2721e3538e60ac6dadad Author: Alan Garny Date: Tue Mar 6 12:27:46 2012 +1300 Working towards #62 and #63. commit fdb7293d8fdd88de52dc71c627fe69cb36033850 Author: Alan Garny Date: Tue Mar 6 11:24:02 2012 +1300 Working towards #63. commit ed7f4c78148c06dc46d742b861f432c01d9ec6c8 Author: Alan Garny Date: Tue Mar 6 11:10:17 2012 +1300 Some work towards #62 and #63. commit dc45aaddb78542fcc237e4eadb07f8b4711fac6a Author: Alan Garny Date: Tue Mar 6 11:03:37 2012 +1300 Minor cleaning up (#57). commit 052695d2b8c4aa753901648bf42724b07d143ec1 Author: Alan Garny Date: Mon Mar 5 18:00:59 2012 +1300 Some more work on #62 (solver interface) and #63 (Forward Euler solver). This time also adding the solver interface files! commit 6040fe43459767e1d278807802814f971aa7610f Author: Alan Garny Date: Mon Mar 5 17:46:55 2012 +1300 Working on #62 (solver interface). commit c886e9f0331cbf9afdd4137dde71d3734d77bcfc Author: Alan Garny Date: Mon Mar 5 17:31:11 2012 +1300 Starting work on #63 (Forward Euler solver plugin). commit f5e487b923a61c999ec484406c468e9275369d01 Author: Alan Garny Date: Mon Mar 5 17:04:38 2012 +1300 Closes #66. commit 035a33683b81a09a32c4ef33a4562c95a99463c6 Author: Alan Garny Date: Mon Mar 5 15:22:49 2012 +1300 Minor refactoring (#57). commit b20c7f1d725d5154a485736b8eb105d6fa5c7a95 Author: Alan Garny Date: Mon Mar 5 14:29:57 2012 +1300 Addressed a couple of memory issues reported by Valgring. commit 9bc3bd630e220a49f7a0c6b2437522197f151508 Author: Alan Garny Date: Mon Mar 5 11:40:24 2012 +1300 Some minor cleaning up (#57). commit 4a6911d2eb6ef97b1e1f448f315d8fa2b4c264df Author: Alan Garny Date: Mon Mar 5 11:37:04 2012 +1300 Had forgotten to initialise a property in our HelpWidget class. This resulted in an '\''error'\'' from valgrind. commit da17d477d0d25a353525730833d765fd2b3f5203 Author: Alan Garny Date: Sun Mar 4 16:14:40 2012 +1300 Closes #61. commit 7bae343a6dc279e0ce33eb319abbf074024f9e79 Author: Alan Garny Date: Sun Mar 4 16:00:48 2012 +1300 Some minor cleaning up (#57). Also a couple of minor fixes with regards to emitting some signals after having loaded the settings of some widgets which signals can be used to guide the availability of certain of their features. commit 913afedb38a048d6463207c925466a025b535900 Author: Alan Garny Date: Sun Mar 4 05:44:09 2012 +1300 Another minor fix for our FileOrganiserWidget class. commit 6aa54adc6d14af72a16439a81fb29e660a65930e Author: Alan Garny Date: Sun Mar 4 05:37:13 2012 +1300 Fixed a small bug in our FileOrganiserWidget class. commit f39104a19878dc82a6c4b0411a24a5e7b3b49337 Author: Alan Garny Date: Sun Mar 4 05:20:52 2012 +1300 Some more refactoring (#57). commit fab70f39238a27884feb6c400738c61b779d193b Author: Alan Garny Date: Sun Mar 4 04:35:58 2012 +1300 Some minor refactoring (#57). commit 677b7b6a35660c097b17ec833279520f54837a97 Author: Alan Garny Date: Sun Mar 4 04:10:58 2012 +1300 Minor refactoring (#57). commit 06d5d0c5458d20aefe553175414af07e3b50e204 Author: Alan Garny Date: Sun Mar 4 03:49:58 2012 +1300 Closes #60. commit b73e92153af165e1f4e0284b2104ec359272a9c7 Author: Alan Garny Date: Sun Mar 4 02:47:30 2012 +1300 Minor refactoring (#57). commit 8d70f65e30932a023a420828674eb31bc82d7cb5 Author: Alan Garny Date: Sun Mar 4 02:18:20 2012 +1300 Argh, forgot something in my previous commit... commit b6aceb6ad8676549955450454b897f493faa8a1f Author: Alan Garny Date: Sun Mar 4 01:53:19 2012 +1300 Minor cleaning up (#57). commit 5bcb36df20dfeb5699d850bb6e2ee632124cc397 Author: Alan Garny Date: Sun Mar 4 00:37:50 2012 +1300 Some minor cleaning up (#57). commit 86f26fa582b5293ec11d208b6afd5ffbf957c7ad Author: Alan Garny Date: Sat Mar 3 22:15:41 2012 +1300 Slight improvement to our FileBrowser plugin as part of issue #60. commit c120b099c4d443964a5116dca984fb2c3c7a3eff Author: Alan Garny Date: Sat Mar 3 21:20:18 2012 +1300 Slight update to the developer documentation. commit 0ba60ae726fb6c8f9adb359cb7a2b530c41b941e Author: Alan Garny Date: Sat Mar 3 20:03:09 2012 +1300 Some minor cleaning up (#57). commit 11d6d3541d4e6790b9e137a8b4bc15432d2360c1 Author: Alan Garny Date: Sat Mar 3 19:55:10 2012 +1300 Some more work towards #60. commit d5950f57e4bf1e7143ae9b88ebb55b41ca20c6a1 Author: Alan Garny Date: Sat Mar 3 18:56:08 2012 +1300 Some minor cleaning up (#57). commit b084b1dc474187c673e8f9329d317727b064ac75 Author: Alan Garny Date: Sat Mar 3 18:01:11 2012 +1300 Some more work towards #60. Also some cleaning up in the process (#57). commit 677c91a463d7d1e2d7552666cd860b006f96f822 Author: Alan Garny Date: Sat Mar 3 16:45:25 2012 +1300 Some cleaning up (#57). commit bb2c37f667b6f795a88b1c5959391492d8a06277 Author: Alan Garny Date: Sat Mar 3 16:45:15 2012 +1300 Some work towards #60. commit 35024efc3ffc28ac4be80d31f0cf9b2105d58335 Author: Alan Garny Date: Sat Mar 3 16:18:10 2012 +1300 Some more work towards #60. commit 85e0fe8371f75b81338e80bef6433357644ebc09 Author: Alan Garny Date: Sat Mar 3 16:15:49 2012 +1300 Some work towards #60. commit 82fab12f078bca96ed5f7c6bd8f672db051d3e63 Author: Alan Garny Date: Sat Mar 3 15:50:43 2012 +1300 Slight improvement to #59. commit 68ce3a0c91f655649c7e4f737674c26e05d6b3a3 Author: Alan Garny Date: Sat Mar 3 15:30:54 2012 +1300 Closes #59. commit 4cd80386f5c73ce23da61ba2de0755fdb575cef3 Author: Alan Garny Date: Sat Mar 3 13:40:26 2012 +1300 Closes #58. Also some cleaning up (issue #57). commit b4b4823f7f3a4a4e3f4c425809d7c29c244c7dc9 Author: Alan Garny Date: Sat Mar 3 11:43:24 2012 +1300 Closes #56. commit b10cd6e0830f4e88170e2acef867c470ccaf7bc0 Author: Alan Garny Date: Fri Mar 2 23:00:58 2012 +1300 Fixes #55. commit e30799259db8e66b752dd6b0cb71fe792aa19e98 Author: Alan Garny Date: Fri Mar 2 22:51:38 2012 +1300 Improved issue #54 by taking into account the version of Mac OS X the user uses. commit 1d305eb2b8599f50b5ed4436a42cc9f1a71fa17f Author: Alan Garny Date: Fri Mar 2 22:35:07 2012 +1300 Closes #54 (again!). commit 942789294db56d7794199c4af9ebe72236f1a419 Author: Alan Garny Date: Fri Mar 2 22:29:20 2012 +1300 Improved the implementation of #54. commit 071785235d6a020c455b64fd24eb24b4a89384b7 Author: Alan Garny Date: Fri Mar 2 22:14:52 2012 +1300 Closes #54. commit d510021284e91c90da75a94c0e1948b0c6b485f8 Author: Alan Garny Date: Fri Mar 2 22:00:40 2012 +1300 Closes #53. commit df73e01a208b17e7a34b104cb64355900387f48a Author: Alan Garny Date: Fri Mar 2 21:49:21 2012 +1300 Reworked part of the GUI interface a bit. commit 60d1522d69f85d79bdcdc8d6185b182a0ca76f93 Author: Alan Garny Date: Fri Mar 2 21:35:19 2012 +1300 Added a new Widget class which inherits both from QWidget and CommonWidget. commit fca6144b39bde1dc98ab6221919212f6805d4620 Author: Alan Garny Date: Fri Mar 2 21:34:34 2012 +1300 Reworked part of the Core interface. commit 5fae7c2e4430725d64243da0a3ab5e2d4ce4166c Author: Alan Garny Date: Fri Mar 2 21:11:28 2012 +1300 Minor improvement to our SingleCellSimulationGraphPanels class. commit f23bf322072f21045732cf9c9cece17f7e1bb63d Author: Alan Garny Date: Fri Mar 2 20:26:47 2012 +1300 Minor editing of comments. commit 36db03a5c1ad8ddbd1f77a2969b8ae431075acd6 Author: Alan Garny Date: Fri Mar 2 17:16:22 2012 +1300 Fixes #52. commit 8aaa404ac616d755cfcbe467f6ee9b70985902de Author: Alan Garny Date: Fri Mar 2 16:59:43 2012 +1300 Fixes #51. commit 5383b27e57ec301ab38be57008ea944dbb1aa178 Author: Alan Garny Date: Fri Mar 2 16:48:19 2012 +1300 Working some more towards issue #51. commit ff03233e271bdae7660e29c870db5889140a7705 Author: Alan Garny Date: Fri Mar 2 16:34:18 2012 +1300 Working towards issue #51. commit acbc2ba754057cce23e6882830c4fc08968a5798 Author: Alan Garny Date: Fri Mar 2 16:28:26 2012 +1300 Minor refactoring. commit ca0e11b9246427bf70b7e8b7bc8fe5f542ac61a8 Author: Alan Garny Date: Fri Mar 2 16:23:25 2012 +1300 Closes issue #50. commit cd9b567e8603133764be3e3ceaba815a7fc3e338 Author: Alan Garny Date: Fri Mar 2 15:21:17 2012 +1300 Closes #49. Also some cleaning up. commit c82c4fca2af798be241f5e7b2b960153538db1b6 Author: Alan Garny Date: Fri Mar 2 11:47:20 2012 +1300 Some refactoring of our single cell simulation plugin code. commit b24a7d78e5836e75d5be1a003f1eb74f94022a2e Author: Alan Garny Date: Fri Mar 2 10:38:54 2012 +1300 Slight update to the developer documentation. commit a2a4a94af4ad0802afd3b0c2a649fd156fa49310 Author: Alan Garny Date: Thu Mar 1 19:34:15 2012 +1300 Fixed a small issue with our single cell simulation view. The toolbar buttons didn'\''t have their description shown on the status bar. commit 70065159ce63683cc427703151ec13695d9ddba2 Author: Alan Garny Date: Thu Mar 1 19:11:14 2012 +1300 Minor editing of comments. commit 96dacd0b8899a7ff0c278a7efb6a083ce66cc424 Author: Alan Garny Date: Thu Mar 1 19:08:35 2012 +1300 Added some buttons to the toolbar that we use in our single cell simulation view. commit d78cd10b41505bbbaf25b7035261d4303c896721 Author: Alan Garny Date: Thu Mar 1 18:30:19 2012 +1300 Minor editing with regards to tracing information. commit 04a7b8c69a80e2ed96f11493d28406e842a4ad83 Author: Alan Garny Date: Thu Mar 1 18:17:52 2012 +1300 Starting to make use of our simulation output widget to provide the user with some information about the simulation outcome. commit 6721d5b4a906228814e7e72a7a1d5e01eb204477 Author: Alan Garny Date: Thu Mar 1 18:03:17 2012 +1300 Have the graph panels take as much space as possible in our single cell simulation view. commit f1eb1d73a1f62b9255d83c0da521c5b509dac5bc Author: Alan Garny Date: Thu Mar 1 17:04:20 2012 +1300 Minor improvement to our SingleCellSimulation plugin. commit c278a9d2edeb395935145450bdbfc31ae066638d Author: Alan Garny Date: Thu Mar 1 16:03:43 2012 +1300 Worked some more on our single cell simulation view. commit ecde51b6aca3251d460b1be332c333f1f38b10ef Author: Alan Garny Date: Thu Mar 1 14:31:13 2012 +1300 Some work towards the SingleCellSimulation plugin. Also some minor cleaning up. commit c7f4c5c74ae45ce7a4538f7e38018f82fbc19db6 Author: Alan Garny Date: Wed Feb 29 17:02:47 2012 +1300 The Viewer plugin was still manageable while it shouldn'\''t be anymore. commit b2d26cd54ecc99968f4e50570553d0f382dae3b5 Author: Alan Garny Date: Wed Feb 29 15:41:36 2012 +1300 Minor editing of comments. commit 9492a3b56cc9ed4b727c99732c3f9c6224c538f3 Author: Alan Garny Date: Wed Feb 29 14:56:24 2012 +1300 Smaller version of the new CellML header files. commit 6b6bcdaf70a24b630652d2bcdf5b44b07de7cba3 Author: Alan Garny Date: Wed Feb 29 14:50:03 2012 +1300 Upgraded the CellML API to the current snapshot from version 1.10. commit 2a623ad1020aebaab2eff371f52e78a6d5d2da60 Merge: add2bb173 b124be809 Author: Alan Garny Date: Tue Feb 28 18:12:00 2012 +1300 Merge branch '\''master'\'' of github.com:opencor/opencor commit b124be809a794f7fd150829f5747a51c2ea0e6e2 Author: Alan Garny Date: Tue Feb 28 18:11:31 2012 +1300 Minor update to our developer documentation. commit add2bb173e34a2bd4b9159e731fad77cd1efe7bd Author: Alan Garny Date: Tue Feb 28 18:10:41 2012 +1300 Minor improvement to our qtdependencies shell script. commit 40be967c0496dd53913a41536c52686413701c0e Author: Alan Garny Date: Tue Feb 28 17:52:08 2012 +1300 Updated the developer documentation some more. commit 3289bd3242a0f04d038eb0be672dd74174a72b9f Author: Alan Garny Date: Tue Feb 28 17:31:34 2012 +1300 We had some encoding issues with our qtdependencies shell script. commit e7c15d237a22258f8672d7f385ca94757f084b12 Author: Alan Garny Date: Tue Feb 28 17:07:56 2012 +1300 Minor omission... commit edf22b716f5f88c389a683c0b3b52419ea394619 Author: Alan Garny Date: Tue Feb 28 17:05:28 2012 +1300 We are not currently using OpenGL, so... commit 74811f0f512dec79065c13e2ba5f098f42a1459b Author: Alan Garny Date: Tue Feb 28 16:29:46 2012 +1300 MainWindow::showSelf() was still not working on Linux, but I have finally found a solution! It doesn'\''t currently handle the case where we try to activate an instance of OpenCOR located on a different workspace, but that'\''s a start! commit 4c447c67f21e384041b9cc7c484e908a04ada80f Author: Alan Garny Date: Tue Feb 28 11:02:23 2012 +1300 Editing of a comment. commit b5f3a9a99b0e4ce3356005ea8cb9c1e1d09fe544 Author: Alan Garny Date: Mon Feb 27 22:57:21 2012 +1300 Fixed an issue (introduced as a result of us now using Qt 4.8?) whereby OpenCOR would be brought to the foreground upon startup. commit 94777bac7ec0f83d0bdb2abde98e90edcacddaf1 Author: Alan Garny Date: Mon Feb 27 18:20:19 2012 +1300 Oops, forgot to commit a file... commit cb337a7b75f94dc6609edc4a28619a928200e17e Author: Alan Garny Date: Mon Feb 27 18:19:28 2012 +1300 Removed the toolbars from the main window. As for the file browser, file organiser and help windows, toolbars probably ought to be part of a window/view. commit c0a03fdc9f7a3fc9a73226b40938c732ff194a6f Author: Alan Garny Date: Mon Feb 27 17:47:29 2012 +1300 Some renaming and cleaning up. commit 3258ebecd130313de36d25171981c6369519c9a7 Author: Alan Garny Date: Mon Feb 27 17:23:55 2012 +1300 Started work on having a proper view for the SingleCellSimulation plugin. commit 3d6835f389d9485881047e73f0b99b0ab3cb6229 Author: Alan Garny Date: Mon Feb 27 15:49:41 2012 +1300 Minor update to a UI file. commit ee9f7fc07fcaca00f22f4466061a26cfac1848eb Author: Alan Garny Date: Mon Feb 27 15:36:07 2012 +1300 Minor editing. commit ab1acba4f49265da6cd3133681dffd4b94b9e907 Author: Alan Garny Date: Mon Feb 27 10:06:24 2012 +1300 Slight improvement to our CellMLSupport plugin. Some minor cleaning up in our SingleCellSimulation plugin. commit a7de96e70e20a00399a2763c1dc83d5f7c3f3f16 Author: Alan Garny Date: Sun Feb 26 15:05:13 2012 +1300 Minor editing. commit 6cd8ab8a2ba3e9cfaabc5ab627b8488d8043f86f Author: Alan Garny Date: Sun Feb 26 13:52:19 2012 +1300 Added some timers to determine how much time it takes to do certain CellML-related things. Bottom line: the API is well… somewhat slow... commit a80fd5686fc2181e6ff9345b36e44db17a996125 Author: Alan Garny Date: Sun Feb 26 13:31:17 2012 +1300 Minor refactoring of our CellMLRuntime class. commit 78f7aeb237d3b9e3c56b3cefbf8abc41e94e2725 Author: Alan Garny Date: Sat Feb 25 10:51:49 2012 +1300 Minor editing. commit a4d3071ea486e6b5f73023c141f4714460ced64b Author: Alan Garny Date: Fri Feb 24 19:41:34 2012 +1300 I had completely forgotten to revert the code of our Windows console version of OpenCOR...! commit 256c92cac70d9bd6a8bfee36ee12423e0bf6af9b Author: Alan Garny Date: Fri Feb 24 19:14:26 2012 +1300 Minor editing. commit 434b6aad0dcad0d57e4163dd9749832590269dbb Author: Alan Garny Date: Fri Feb 24 19:03:35 2012 +1300 Argh, I was deleting the CellmlFile object! That'\''s why things were crashing in the previous commit! Doh! Time to enjoy my weekend, methinks! :) commit 9e4e63ba4a047e21b8a6a1f84e1585d345ace78a Author: Alan Garny Date: Fri Feb 24 16:33:40 2012 +1300 Working on relying on the CellML file manager, but retrieving a CellmlFile object works fine the first time round, but not afterwards...!? Also some minor improvements here and there. commit c91b1e26e04edfc239ebfdd6347d7e43d69682a1 Author: Alan Garny Date: Fri Feb 24 02:25:31 2012 +0100 Moved the Viewer plugin from the Editing category to the Miscellaneous one (since it might also be useful to non-editing views). commit a77b0b14f11afd7bd86c41d63d1e31886a8c03d9 Author: Alan Garny Date: Fri Feb 24 14:17:33 2012 +1300 Renamed MmlViewerWidget to ViewerWidget in the Viewer plugin. commit 9ca235728bd6cb2b5b6c403fafba83c3bed606eb Author: Alan Garny Date: Fri Feb 24 14:10:41 2012 +1300 Removed the Viewer window from the Viewer plugin, but kept the viewer widget itself. Indeed, we probably don'\''t want a Viewer window sitting around all the time if we are in, say, simulation mode. Instead, whatever view needs a viewer should then create an instance of it. commit cff19f54c5cecbe53a3930b0fc22bd3b525375ac Author: Alan Garny Date: Fri Feb 24 13:55:23 2012 +1300 A bit of refactoring of our Core plugin. commit feabf20e68a89fd65981d013141ba873d1f2cb33 Author: Alan Garny Date: Fri Feb 24 12:02:50 2012 +1300 Done with the aforementioned renaming. commit 9cf31de357fc34643d8b24c1315ce27c4d466007 Author: Alan Garny Date: Fri Feb 24 11:33:15 2012 +1300 Starting work on the renaming of some CellMLSupport classes. commit f194a6db0122cc6863f9e957459823abce3f1d1b Author: Alan Garny Date: Fri Feb 24 11:16:30 2012 +1300 Some work on our CellML file manager. commit 78c9a8246434db070102040c6f2b3fe0eb3e2362 Author: Alan Garny Date: Fri Feb 24 10:42:01 2012 +1300 Simplified error reporting in our ComputerEngine class. commit 7ab1105ad1931bfcde33d44a3e55308d49043adc Author: Alan Garny Date: Thu Feb 23 19:57:37 2012 +1300 Our '\''C'\'' parser doesn'\''t currently support recovery and probably never will since there is no major advantage in supporting it. So, we only support one error for our '\''C'\'' parser (as opposed to a list of errors as was the case until now). Also remove the extra information for a computer error since it was only used in case LLVM couldn'\''t parse some LLVM assembly code. So, that kind of information is not useful to an end-user while a programmer will output it while debugging a problem, if needed. Updated our tests for the Computer plugin, as a result of the aforementioned changes. commit 3c66d48d5fb4095e5692903d12de70103e9e54d0 Author: Alan Garny Date: Thu Feb 23 18:58:01 2012 +1300 Minor improvement to our CellML model runtime class and our single cell simulation plugin. commit b5dd965c5220e2c23f31d121cc1287e1d32e3612 Author: Alan Garny Date: Thu Feb 23 18:43:37 2012 +1300 Removed some old tests that are not necessary anymore (since they are now accounted for in our test framework). Also cleaned up some code. Fixed a small issue (in the parsing of a function) with definite integrals not being supported. commit d1892c06bf87ddf07cbbb3ecd97bd2a546364a15 Author: Alan Garny Date: Thu Feb 23 17:29:41 2012 +1300 Renamed our quotient function to quot in our Computer plugin. Also added some more tests. commit c186890172bf55b1392619063892a5926fe5f499 Author: Alan Garny Date: Thu Feb 23 16:35:20 2012 +1300 Our tests were all passing on Windows, Linux 64-bit and Mac OS X, but not Linux 32-bit. So, replaced calls to QVERIFY2 with QCOMPARE since we are dealing floating point numbers and we can benefit from the fuzzy aspect of QCOMPARE. commit 5cb02a70ba518a18a47422cafc51601dcc5b8ed7 Author: Alan Garny Date: Thu Feb 23 15:52:44 2012 +1300 And again more tests for our Computer plugin. commit 04857be3c83137e45894170c7057b9303b44b8f2 Author: Alan Garny Date: Thu Feb 23 15:40:28 2012 +1300 And again more tests for our Computer plugin. commit c7762301435faad9244dde290fc17ed98629d68a Author: Alan Garny Date: Thu Feb 23 15:23:50 2012 +1300 Yet more tests for our Computer plugin. commit a70967573c590eb9c583774d14313ff861ca8d39 Author: Alan Garny Date: Thu Feb 23 15:14:16 2012 +1300 Some more tests for our Computer plugin. commit 8892a7b6e85aa17bc362c038bcff9a7ec2e53a86 Author: Alan Garny Date: Thu Feb 23 14:56:32 2012 +1300 Added more tests for our Computer plugin. commit d645df84df8bd23f8a78678123ea1ee9313683ed Author: Alan Garny Date: Thu Feb 23 14:22:44 2012 +1300 Some minor refactoring with regards to focusing. commit 0cbbed1762c8ef4dfe56e786f69384b56393c249 Author: Alan Garny Date: Thu Feb 23 11:47:36 2012 +1300 Fixed, once and for all (still need to check on Mac OS X), the focusing issue upon starting OpenCOR. The focus was always on the CellMLModelRepository plugin. commit 49c538f5735be9f44cb2418ac50d46d2618910c4 Author: Alan Garny Date: Thu Feb 23 11:28:46 2012 +1300 Minor editing of a comment. commit 10eb7c5f21dd6d7f7670341c66113ac48d7c92a2 Author: Alan Garny Date: Thu Feb 23 11:10:54 2012 +1300 Addressed an issue with the focus not being properly set when starting OpenCOR. Ideally, we want to the focus to be on the central widget. I seem to remember that it used to work before... maybe before upgrading to Qt 4.8? Whatever the case, hopefully, this commit fixes this focus issue. commit 8574652a35a248df730bbf3eb813fadef5e7c87b Author: Alan Garny Date: Wed Feb 22 18:56:54 2012 +1300 Some cleaning up. commit a3b07fcced8fbc156a9b3f85a2f008d5ab763370 Author: Alan Garny Date: Wed Feb 22 18:50:16 2012 +1300 Slight improvements to our test simulation view. commit 1548fa4703ea0408123eb8863338d954ae7192b6 Author: Alan Garny Date: Wed Feb 22 18:49:45 2012 +1300 Added support for the '\''C'\'' parsing of definite integrals from a CellML file, but don'\''t yet support them when it comes to the generation of binary code. Some minor cleaning up. commit cd696bfbe09e61fef34ee657406964f68f2b116c Author: Alan Garny Date: Wed Feb 22 18:21:55 2012 +1300 Made compiler warnings into errors. Also slight modification to our recently added test CellML file. commit 271fd803bb167f71b4cace5699abbcc0f498d49e Author: Alan Garny Date: Wed Feb 22 14:54:37 2012 +1300 Added a new test CellML file. commit de7cd45529204d08851882a291affb4fb2ab62b5 Author: Alan Garny Date: Tue Feb 21 22:51:43 2012 +1300 Minor update to our Linux / Mac OS X shell scripts. commit f9bd41b0daf1bb37d30dcfffeb57385eb43c29e1 Author: Alan Garny Date: Tue Feb 21 18:26:11 2012 +1300 Added some more tests for our Computer plugin. Fixed a small issue with our computer engine in the process. commit 8cbd27cb6653e40c009d429e6556059e260ffde5 Author: Alan Garny Date: Tue Feb 21 16:45:32 2012 +1300 Removed the generation of code for definite integrals since we don'\''t currently support them. commit 40bd3d08c0754ea2464ec8f8517032246713924b Author: Alan Garny Date: Tue Feb 21 14:00:00 2012 +1300 Added a comment about the CellMLSupport plugin not currently supporting definite integrals. commit d05340e484101de7461b5378e009d7e82f3b1273 Author: Alan Garny Date: Mon Feb 20 18:24:26 2012 +1300 Forgot a header file when upgrading QScintilla. commit 4f396494d9d2ed28eec8af8837d30c20b178b577 Author: Alan Garny Date: Mon Feb 20 18:01:47 2012 +1300 Removed the support for some languages in QScintilla (since we don'\''t use them at this stage). commit 9816b4950e9aba5d42763065b49e2e858bd1715a Author: Alan Garny Date: Mon Feb 20 17:52:57 2012 +1300 Upgraded QScintilla from version 2.6 to version 2.6.1. commit 850a8a2158440058eacd51cae4e535f610dcc303 Author: Alan Garny Date: Mon Feb 20 17:40:58 2012 +1300 Minor fix to the developer documentation. commit 58b62b5b117b1a892b1b4030690fa261ad7fd051 Author: Alan Garny Date: Sat Feb 18 21:55:08 2012 +1300 Some minor refactoring. Also added some comments about our '\''global'\'' instance strategy (formerly known as singleton strategy). commit b3bc20238c8cabc277f17a22d15fcaf3401df68c Author: Alan Garny Date: Sat Feb 18 18:22:22 2012 +1300 Ok, our singleton solution works fine on all three platforms, so removed the corresponding debug traces. commit 5d5012e33c6292280c03c21049a7737460c7f65b Author: Alan Garny Date: Sat Feb 18 18:08:02 2012 +1300 Our singleton solution was working fine on Windows and Linux, but not on Mac OS X. There was a problem of read/write conflicts using QSettings, but because the singleton issue doesn'\''t apply to Mac OS X, we could get away with just doing what we were hoping to do in the first place, i.e. just return the address of the class'\''s default instance. commit cf49739fc72531cd42e57379d98889ab7b3ac177 Author: Alan Garny Date: Sat Feb 18 18:01:19 2012 +1300 Addressed a visibility issue with Linux and Mac OS X. commit 930eb6aa3504b09f72ddef5e3ac29928f7156075 Author: Alan Garny Date: Sat Feb 18 17:25:35 2012 +1300 Argh, after all, it wasn'\''t obsolete but very critical code (if we want to the CellML file manager to work) which we removed earlier! commit 30b1ef1b8ef9c060af58d9ea2ac18ee37849f9c7 Merge: 0d0ae88df 07834b891 Author: Alan Garny Date: Sat Feb 18 17:17:18 2012 +1300 Merge branch '\''master'\'' of github.com:opencor/opencor commit 0d0ae88df89ed9ed221e5cb242981b71d12a63ca Author: Alan Garny Date: Sat Feb 18 17:16:55 2012 +1300 Removed some obsolete code. commit 07834b891cfa9dc0adfcb9b9c194ee3b73b0ffd5 Author: Alan Garny Date: Sat Feb 18 17:01:48 2012 +1300 Argh, I removed the debugging code which is needed to test things on Linux and Mac OS X! commit 34faf92a9c93377ccc38662b9ed9a557155433da Author: Alan Garny Date: Sat Feb 18 16:56:36 2012 +1300 Managed to get the sinleton approach to work on Windows (and, hopefully, also on Linux and Mac OS X!). Also fixed a silly mistake when checking whether a file is a CellML file or not. commit ed4c06da64fe14fd23611da9c14a5b20000db48f Author: Alan Garny Date: Sat Feb 18 15:03:16 2012 +1300 An approach to the singleton issue which I thought would work, but doesn'\''t in the end. Now, I am going to try via the '\''registry'\''. commit 36d6717a64b1f0554b1c31c41ce4407c0f142eef Author: Alan Garny Date: Sat Feb 18 14:02:56 2012 +1300 Created a QtSingleApplication-based class with the view of having it handling singletons (such as for the file manager and CellML file manager). Indeed, on Windows and Linux, but not on Mac OS X, the instance of, say, the '\''global'\'' file manager is different depending on the plugin from which it'\''s being queried. Thinking of it, it'\''s not that surprising since plugins are really independent from one another, so their memory space ought to be too. As for Mac OS X, the reason for which it works is probably due to the bundling approach used by Apple. commit 5e3ea88be18c6ca14e69a814a77a3a7836776214 Author: Alan Garny Date: Sat Feb 18 13:54:20 2012 +1300 A few missing header files as a result of some of the last few commits. commit f1368ed2fae7ba66d04faa9a1c4e765285bdab1e Author: Alan Garny Date: Sat Feb 18 10:23:01 2012 +1300 More cleaning up of some of our plugins'\'' global header file. commit 82e36d8e5e5346212ea27470ec87de6ced3ea291 Author: Alan Garny Date: Sat Feb 18 10:03:36 2012 +1300 Reversed some of our main.cpp code. I thought we didn'\''t need to go the pointer route for the application and main window, but thinking more about it and even though it was working fine, it might take a tiny bit longer to quit which might be critical when needing to restart OpenCOR, so... commit 9a250721446523a5f2d7ac34c62a1e6a5d8d0063 Author: Alan Garny Date: Sat Feb 18 09:57:58 2012 +1300 Minor debugging fix for Mac OS X (and probably also valid for Linux). commit e2a18b6f39d8195fa61d833857e8d0b11d4db945 Author: Alan Garny Date: Sat Feb 18 09:57:07 2012 +1300 Minor cleaning up of some of our global plugin header files. commit 979b628e12883efdb28319cdb48425a676fb1a17 Author: Alan Garny Date: Sat Feb 18 09:48:21 2012 +1300 Minor editing of our main CMake files. commit 20c3d8d408a687cdb7476b08e70504b124128e2a Author: Alan Garny Date: Fri Feb 17 19:08:59 2012 +1300 Some minor refactoring and cleaning up. Also some work towards our CellML file manager, but things are not quite working as expected since we need access to our '\''global'\'' file manager and depending on where we query '\''our'\'' global manager (i.e. from the Core plugin or the CellMLSupport plugin), we get a different '\''global'\'' file manager. Thinking of it, I guess it'\''s '\''normal'\'' since a plugin is completely independent from another. Still, this is an issue that needs to be addressed otherwise our CellML file manager won'\''t work... commit 4af97e26e00cb3f171cd92aa72635200339b8811 Author: Alan Garny Date: Thu Feb 16 18:10:13 2012 +1300 Going back to working on the CellML file manager which a pre-requisite to having CellML files properly managed in OpenCOR. Also some cleaning up and memory leak fix. commit 3cbe9067e8ea61e83e39d4a9a5d429319507085c Author: Alan Garny Date: Thu Feb 16 16:35:31 2012 +1300 Fixed a typo. commit dd134b294691824376cde292fd292497aaa84d31 Author: Alan Garny Date: Thu Feb 16 15:41:57 2012 +1300 Improved our '\''C'\'' parser as a result of adding some tests for our Computer plugin. commit 033549e345865cb66136f5ed306c3b69e2caebb9 Author: Alan Garny Date: Thu Feb 16 14:22:39 2012 +1300 Slight improvements to our '\''C'\'' parser. commit 24dc91ae2dd588de54bc6623cd9d8ec047c876a7 Author: Alan Garny Date: Thu Feb 16 13:53:58 2012 +1300 Minor improvement to our '\''C'\'' parser. commit 382939486853eb3bab3cfee2af176df07cb6a848 Author: Alan Garny Date: Thu Feb 16 13:03:38 2012 +1300 Minor cleaning up. commit 282716eea846500c28955f44721285b2ba30f5e4 Author: Alan Garny Date: Thu Feb 16 12:39:31 2012 +1300 Added a test for the Computer plugin. commit 1a855c4349a8e3c5aa91f5ca89913eb9e62bf2e4 Author: Alan Garny Date: Thu Feb 16 12:30:38 2012 +1300 Forgot that in a test, we might want to link to the plugin for which the test is done! commit d3183de53324b72293f5dc0cf2cb8a2ef5817b60 Author: Alan Garny Date: Wed Feb 15 18:48:40 2012 +1300 Our test framework wasn'\''t working on Windows (now that we '\''test'\'' things a bit better). commit 4cd7d31071b47a02df366ee0c334353c1aaf2f49 Author: Alan Garny Date: Wed Feb 15 18:08:31 2012 +1300 Fixed an issue (which I thought didn'\''t exist) with regards to the running of tests. commit 559106b7faf22c85f923d0d4a66c8014dacfdf55 Merge: 49138e2f2 1c9bdef6e Author: Alan Garny Date: Wed Feb 15 16:16:43 2012 +1300 Merge branch '\''master'\'' of github.com:opencor/opencor commit 49138e2f2c57f2fcbb840644635154bb061feb80 Author: Alan Garny Date: Wed Feb 15 06:03:42 2012 +1100 For each (plugin) test, we give the test the same dependencies as the plugin itself, as well as a dependency on QtTest. This allows us to properly test the plugin. commit 0a4bfc105eb8828b6ce086f4a1fc3b9b5a71f62e Author: Alan Garny Date: Wed Feb 15 05:33:24 2012 +1100 Minor improvement to our CellML Model runtime class. commit 6e07b3df74301f6a0c8f6e5aaa96ec6d2b46760c Author: Alan Garny Date: Wed Feb 15 05:07:10 2012 +1100 Removed some debugging traces. commit 669ec42bfca5c4fca92b3e5475c4328f2fc9a09e Author: Alan Garny Date: Wed Feb 15 05:02:31 2012 +1100 Minor improvement to our computer engine and scanner. commit 1ee0cbb34a64687f748f1f592a0563ed225b6e64 Author: Alan Garny Date: Wed Feb 15 04:52:42 2012 +1100 Can now fully test plugins within our testing framework on Mac OS X. commit bd46db184d452521dcc6c28d8c4aa4ea7f475862 Author: Alan Garny Date: Wed Feb 15 04:23:35 2012 +1100 Make sure that any third-party library that is to be used as part of a test is properly '\''deployed'\'' in the build directory. commit 8f468baba5b5acae210cbe13bbae1ebe21c533fc Author: Alan Garny Date: Wed Feb 15 04:17:56 2012 +1100 Added a few comments to our common CMake file. commit e00762681a0c8666f50b8a64b170946a943dfeec Author: Alan Garny Date: Wed Feb 15 03:20:01 2012 +1100 Some files were not picked up by GitX for the last commit on Mac OS X, so... commit d96c69e6f92f67f81836dcecff56d540edfaf5d0 Author: Alan Garny Date: Wed Feb 15 03:18:14 2012 +1100 Renamed the CellML plugin to CellMLAPI plugin. This is to avoid, on Mac OS X, name conflicts between our CellML API plugin (originally libCellML.dylib) and the core CellML shared library (libcellml.dylib; yes, different not the same cases, but that doesn'\''t seem to matter on Mac OS X). So, now, the CellML API plugin has a filename of libCellMLAPI.dylib on Mac OS X. commit 092e09a6ffcd066b70533141ba161f0121e560de Author: Alan Garny Date: Mon Feb 13 13:56:21 2012 +0100 Addressed an issue with loading plugins from a test on Mac OS X. commit 1c9bdef6ea037aa9532d4aeadd9f9460205790d1 Merge: 8a5f5b9a7 1668e5086 Author: Alan Garny Date: Mon Feb 13 11:50:30 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 8a5f5b9a7ab3f2b09207ffdb5e9b7f7ef987f055 Author: Alan Garny Date: Mon Feb 13 11:50:09 2012 +0100 Minor update to the developer documentation. commit 1668e50862d088bc21eb5cc6619c28c927f46eeb Author: Alan Garny Date: Sun Feb 12 14:30:08 2012 +0100 Got a bit carried away and removed the qt.conf file on Linux while I shouldn'\''t have since it'\''s crucial to get the help to work on a deployed version of OpenCOR. commit 9d22caa9053e4a49ac037d82df617350f2f69a99 Author: Alan Garny Date: Sun Feb 12 11:51:51 2012 +0000 Replaced our use of the uncool LD_LIBRARY_PATH with RPATH on Linux. commit 5540c40f399c99aeb1bee6ad0703dd3e0c3ecf37 Author: Alan Garny Date: Sun Feb 12 11:01:06 2012 +0000 Forgot to address the CRLF issue of the package shell script when I last renamed it. commit 3e976cdfdfc10fc4c03dc1d8850d3894b52de22b Author: Alan Garny Date: Sun Feb 12 03:49:45 2012 +0100 Minor editing. commit 89bd6c32e0cceda03041a923398a71efe3f7b5cd Author: Alan Garny Date: Sun Feb 12 03:25:00 2012 +0100 Minor editing of a comment. commit bbc9ccba962bfd1f8fc6c3d50c7d8b4ce7c81acf Author: Alan Garny Date: Sun Feb 12 03:19:03 2012 +0100 Minor refactoring of our main CMake files. commit ae3d5e16d15a26a427fecff393337b06655e7bf9 Author: Alan Garny Date: Sun Feb 12 01:48:42 2012 +0100 Minor improvement to our common CMake file. commit 23fd4fe8f84a6c3fed448dd0ae8c7edf051b6813 Author: Alan Garny Date: Sun Feb 12 00:26:41 2012 +0000 Got our latest test-related commit to work on Linux. commit eb5d503f60962b6d10a6d6f6f5a6ef0c11b0ea5f Author: Alan Garny Date: Sun Feb 12 00:26:20 2012 +0100 Improved our testing framework. Can now load a plugin from a test. commit 1bdeec9976530eb603046cb494cd55ade5898896 Author: Alan Garny Date: Sat Feb 11 23:18:16 2012 +0100 Minor fix to our exec() utility function. Also improved the loading of plugins. commit a65714c0f47ad491d0c5f4d2bfe5c8501cf705fe Author: Alan Garny Date: Sat Feb 11 14:39:01 2012 +0100 Improved the tracking/retrieving of the current mode/view in the central widget. commit a232b8ca067a4b36bf0be577271e9fe4fe3ec9ad Author: Alan Garny Date: Sat Feb 11 12:19:11 2012 +0100 Improved our central widget (it was making an unnecessary call to updateGui()). Slight '\''fix'\'' to our testing of CellML files. commit 00dc708c5bc97b63917f64a78042a357ad56bdda Author: Alan Garny Date: Sat Feb 11 02:08:54 2012 +0100 Simplified our main() functions. Also fixed another remaining problem with our main test program. commit 722157229d4850d25958bd6f9aed8cd29875b0c4 Author: Alan Garny Date: Sat Feb 11 00:53:58 2012 +0100 Fixed a small issue when trying to run the tests from a different Windows drive. commit d3c3fc5b327be4f0848d930892199af3cd710af1 Author: Alan Garny Date: Fri Feb 10 19:48:18 2012 +0100 Added an overall report to our test framework. commit e1aa7665d22c7e4277b3943d4e151d3a139b1705 Author: Alan Garny Date: Fri Feb 10 19:33:32 2012 +0100 Fixed the issue of getting the tests to run on Linux and Max OS X. commit c6754d0b5e1a92a5c00b98bda15b01ac94165f9a Author: Alan Garny Date: Fri Feb 10 19:11:32 2012 +0100 Oops, forgot to clean up my debugging traces. commit ec28f081e42595fecc546e79c928dc571e8bec6d Author: Alan Garny Date: Fri Feb 10 19:09:55 2012 +0100 Fixed an issue with our test framework on Linux and Mac OS X. commit a84151dad961e8d3d620a1766e13234eb3b4bb8c Author: Alan Garny Date: Fri Feb 10 18:56:44 2012 +0100 And keep fixing things... commit eb3e68eb55aaf98ecd450d6e6670f302c80dfccb Author: Alan Garny Date: Fri Feb 10 18:52:33 2012 +0100 Minor fix to our main CMakeLists.txt file. commit 07a17065a47fb7f64441748267d2545eb93d1ec0 Author: Alan Garny Date: Fri Feb 10 18:48:51 2012 +0100 Minor refactoring. commit 329422ff69b83da4341254c15249664194dec5c5 Author: Alan Garny Date: Fri Feb 10 18:44:53 2012 +0100 Argh, the CRLF issue... commit 5d174022d83b9b707f1e1ec3c2ca89d9a6a1c487 Author: Alan Garny Date: Fri Feb 10 18:43:16 2012 +0100 Updated the access mode of the maketests and runtests shell scripts (for Linux and Mac OS X). commit 7188f35f2aa7eef637e389f87d5cf37b42b49834 Author: Alan Garny Date: Fri Feb 10 18:39:03 2012 +0100 Added a plugin-level testing framework (based on QTestLib) and added a dummy test to the CellMLSupport plugin as an example. commit 1659685737168cb06f05a217609a2a7dbc8e491b Author: Alan Garny Date: Thu Feb 9 13:30:13 2012 +0100 Updated the developer'\''s documentation. commit 1d33bcc7d3b425f9904077b18477e801d478de11 Author: Alan Garny Date: Wed Feb 8 15:57:31 2012 +0100 Updated the developer documentation (as a result of renaming our shell/batch scripts). commit 08befc264f4203c0f6125c5055b5dadfcfd7990f Author: Alan Garny Date: Wed Feb 8 15:49:42 2012 +0100 Updated the name of our shell/batch scripts. commit 28e8a683c2a2ebe3341e86cc6570d78e679180ee Author: Alan Garny Date: Wed Feb 8 14:18:52 2012 +0100 Hide the preferences and check for updates menu items since they are not fully implemented. commit 9e0d1548f290d731ee1dfb765416f1e12ea7458c Author: Alan Garny Date: Wed Feb 8 13:38:47 2012 +0100 Fixed an issue with our '\''C'\'' code generator (how did I miss that one, I don'\''t know!?). Also, fixed a small issue in our CellML simulation test code. commit d9a5320e6604479103d7b347a696e9436d2dd6b3 Author: Alan Garny Date: Wed Feb 8 11:41:29 2012 +0100 Some updates to the user documentation. commit 55cc0ea8a7c179c467511fa05e40cf8a67edeb32 Author: Alan Garny Date: Wed Feb 8 11:02:38 2012 +0100 Removed the Logo widget in the Core plugin since we can achieve the same result using a style-sheet. commit 22ebf5126e476188801a4689689d3805f92f4654 Author: Alan Garny Date: Wed Feb 8 10:36:33 2012 +0100 Created the skeleton of the RICORDOSupport plugin. commit 9bfaca1fda7d731ac915293e3a7e3cbdde18ef9c Author: Alan Garny Date: Tue Feb 7 18:36:41 2012 +0100 Oops, typo... which suprisingly to me didn'\''t matter on Windows and Mac OS X, but did on Linux. commit 16c71ae36bc8877a6f4fe57b068357094ba5bede Author: Alan Garny Date: Tue Feb 7 18:29:53 2012 +0100 Created the skeleton of the CellMLAnnotation plugin. commit 34f5bc39ba3357d2819597e7ed6a877755759f57 Author: Alan Garny Date: Tue Feb 7 16:38:19 2012 +0100 Some minor refactoring of our CellMLSupport plugin. commit 8c1b5fa65790b42dcc976ea4d71f42a826bd725b Author: Alan Garny Date: Tue Feb 7 15:29:43 2012 +0100 Removed the '\''factorOf'\'' and '\''xor'\'' functions and, instead, re-implemented the use of '\''%'\'' and '\''^'\'' in our '\''C'\'' compiler. Also some cleaning up. commit e624b55d3092f557bbe099f29981fc9c44fa0339 Author: Alan Garny Date: Tue Feb 7 14:15:32 2012 +0100 Minor fix to our '\''C'\'' generator. Also simplified our testing of some CellML models. commit 23f9e821fdd806c7d953bad52c0c4cb892ea44fb Author: Alan Garny Date: Tue Feb 7 10:46:03 2012 +0100 Allow the testing of the Mitchell-Schaeffer 2003 model. commit dc0dd23a51e67e1a73c4cca2beed9fda163d005f Author: Alan Garny Date: Mon Feb 6 18:56:26 2012 +0100 Oops, forgot some N98-related traces... commit 3c85d78e334e5e232579c1af246d51895ac75831 Author: Alan Garny Date: Mon Feb 6 18:55:53 2012 +0100 Added support for piecewise statements in our C-like compiler. Allow the testing of a few other CellML models. Note, though, that Noble 1998 doesn'\''t work...!? commit 02b07a53781a7557b86f8f0cae968dbb647b7f3d Author: Alan Garny Date: Mon Feb 6 15:39:06 2012 +0100 Avoid a couple of warnings on Mac OS X. commit 0ef2a6300b518ed2b2ad1ead5f898d6226b85f9e Author: Alan Garny Date: Mon Feb 6 15:32:10 2012 +0100 Minor editing. commit 41ff3b9b325590922246ed3cbc92e1d863fc045b Author: Alan Garny Date: Mon Feb 6 15:28:07 2012 +0100 Added support for the logical operators. commit a26ad02d158b3cb6371c54a8e22d06f768037d98 Author: Alan Garny Date: Mon Feb 6 11:31:26 2012 +0100 Some more minor editing. commit dd14dce1899a326c364a6b7ce9183e088e08b14b Author: Alan Garny Date: Mon Feb 6 11:29:55 2012 +0100 Minor editing. commit 52e4b16a00d581dc0eb53867f9e141dfe5cb33ba Merge: b2418fc48 7628c488e Author: Alan Garny Date: Mon Feb 6 09:34:06 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 7628c488e570313d7698eb7add97c6d873c726dd Author: Alan Garny Date: Sun Feb 5 19:50:54 2012 +0100 Forgot a header file for Linux. commit 7df427bfadb0d988c24ebdbf9614ffd9d9eca7d9 Author: Alan Garny Date: Sun Feb 5 19:35:01 2012 +0100 Added support for multi-parameter functions and, as a result, added support the multi-parameter gcd, lcm, max and min functions in our '\''C'\'' compiler. Minor change to the XOr function (the scanner now looks for '\''xor'\'' rather than '\''xOr'\''). commit fbda3e4dd7987759200f7cd9b9f2264a5a87f73c Author: Alan Garny Date: Sun Feb 5 19:23:32 2012 +0100 Fixed the CellML-based multi-parametr gcd and lcm functions which were wrong (loops for ever). commit de975e77a99c5dd75e4353fd40a10ea67489b05f Author: Alan Garny Date: Sun Feb 5 13:16:28 2012 +0100 Added a few new computer mathematical functions (multi gcd, lcm, max and min). commit 009d123dc376625a566bc72d6388b8a64dcb8f69 Author: Alan Garny Date: Sat Feb 4 19:02:21 2012 +0100 Minor editing. commit d8fc3d7632ce34110f63ca56685abb843328ee52 Author: Alan Garny Date: Sat Feb 4 18:52:52 2012 +0100 Added support for the '\''xor'\'' function in our '\''C'\'' compiler. commit 48857559246f3f0523819dac00779046954d7db8 Author: Alan Garny Date: Sat Feb 4 18:32:29 2012 +0100 Added support for the '\''quotient'\'' and '\''rem'\'' function to our '\''C'\'' parser. commit a2f1faf399788a822417413ddf3588f59f565039 Author: Alan Garny Date: Sat Feb 4 18:05:28 2012 +0100 Removed support for the modulo (%) operator in our '\''C'\'' parser since it requires converting a double into an int, etc. So too much hassle considering that the CellML API only requires modulo in a couple of cases: '\''factorof'\'' and '\''rem'\''. So, we can create and call a function instead which are now doing for '\''factorof'\'' ('\''rem'\'' is yet to be supported). commit b2418fc48af875217004e9d9bcd712bf91be5b68 Author: Alan Garny Date: Fri Feb 3 18:49:46 2012 +0100 Ok, not quite comparable, but something like 3 times slower than COR. Still pretty good for a first test though... commit 05af2295e8d178fda78322077388b87ccd2caea8 Author: Alan Garny Date: Fri Feb 3 18:40:17 2012 +0100 Can now test the van der Pol 1928, Noble 1962 and Zhang 2000 models, and simulation times are comparable to COR (nice!). commit 687f0a2954e7e9d945a9373e62f7e7c4c50009a3 Author: Alan Garny Date: Fri Feb 3 18:39:13 2012 +0100 Fixed a typo. commit 58ae341c9354001541f75021693b7bababbd052e Author: Alan Garny Date: Fri Feb 3 16:04:45 2012 +0100 Ok, the last commit trying to fix the issue with QtWebKit wasn'\''t correct, so... commit b7da04506fe6cb61414c37ef5aaa26904ad7ca7d Author: Alan Garny Date: Fri Feb 3 15:39:28 2012 +0100 Fixed an issue which came about after upgrading from Qt 4.7.4 to Qt 4.8.0. It would seem that QtWebKit is now more fussy (or maybe it was too relaxed before and is now doing what it should have been doing all along?) when it comes to importing a CSS file from another CSS file. Also simplified some of our Help widget code (as a result of upgrading to Qt 4.8.0?). commit 600cc765f0e9fa6bfd15155594aa083328d3aca6 Author: Alan Garny Date: Fri Feb 3 13:25:08 2012 +0100 Minor issue with our Linux packaging. QtWebKit is still causing problems though... i.e. the Help plugin still doesn'\''t work as it used to be before upgrading to Qt 4.8.0 from Qt 4.7.4. Argh! commit 00c05de7804934a89901edfa4ee48b860f0751ee Author: Alan Garny Date: Thu Feb 2 17:38:08 2012 +0100 Minor editing. commit d3b80983cdc3eaa9b4c46bd1e4674978daa124fc Author: Alan Garny Date: Thu Feb 2 16:52:08 2012 +0100 Working towards getting the help to work on all three platforms. Indeed, after switching to Qt 4.8, there is an issue with the help (in fact QtWebKit it would seem). commit 18dd55fd18861f2429e29c88dc1209474f7014e9 Author: Alan Garny Date: Thu Feb 2 15:57:28 2012 +0100 Minor change which makes the selection of the first visible plugin (in the plugins window) more sensible (this came about as a result of recategorising the Core and Help plugins). commit ec0a25f8d4289525ab8efc2317e65756dc1b7a7c Author: Alan Garny Date: Thu Feb 2 15:36:56 2012 +0100 Minor editing. commit 34d4034ea34ce8e76b69dc668d4af81686e6e86b Author: Alan Garny Date: Thu Feb 2 15:03:40 2012 +0100 Minor refactoring. Also updated the category to which the Core and Help plugins belong. commit a9498dde68e2602422c080e8f674e77febe2ad6f Author: Alan Garny Date: Thu Feb 2 11:17:30 2012 +0100 Moved the Core and Help plugins under the '\''misc[ellaneous]'\'' folder (rather than have them under the '\''application'\'' folder). commit 642f0d62ad0395ca24d270a13c72ad3b71afd72d Author: Alan Garny Date: Thu Feb 2 11:05:09 2012 +0100 Argh, qDebug() again... commit 788a932c6dbf1a91c795e06dec478b417c4cb85b Author: Alan Garny Date: Thu Feb 2 10:53:10 2012 +0100 Make use of qPrintable whenever possible which is makes the code cleaner. '\''Fixed'\'' a few remaining qDebug() related issues. commit 384205271b41cc549d9427d8f9da55b52f83b62d Author: Alan Garny Date: Thu Feb 2 10:31:38 2012 +0100 Some minor refactoring (to avoid warnings in our use of qDebug()). commit b3d3181d1c3aa5f8b40fbd95647b518f169e62cd Author: Alan Garny Date: Thu Feb 2 07:35:48 2012 +0100 Minor cleaning up of one of our CMake files. commit bd31958f1d259ada9e66e7d992cec33767692e59 Author: Alan Garny Date: Wed Feb 1 23:04:39 2012 +0100 Minor editing of one of our resource files. commit cc8403ec336b26c4d1fb1f03d2cda7b909e532bf Author: Alan Garny Date: Wed Feb 1 20:37:35 2012 +0100 Oops, minor oversight. commit 7f9ee7cf1177fe582978a111feec1da4f46b2a17 Author: Alan Garny Date: Wed Feb 1 20:31:13 2012 +0100 Moved the generation of the help files to the Help plugin CMake file. commit 9c96412a523b9819f93485d6842635a405fe4a8e Author: Alan Garny Date: Wed Feb 1 17:56:19 2012 +0100 Minor refactoring. commit a65261530e49687d8548d74ed2acca3fb3a28dd9 Author: Alan Garny Date: Wed Feb 1 16:31:37 2012 +0100 Updated the copyright year everywhere in the project. Update the French Qt translations. commit 2628ed59fe57b67fc98931721ab85a03020ba5ef Author: Alan Garny Date: Wed Feb 1 15:43:13 2012 +0100 Updated the developer'\''s documentation to reflect our upgrading from Qt 4.7.4 to Qt 4.8.0. commit 12836326cf3c783957398aaaddaad1601e336336 Author: Alan Garny Date: Wed Feb 1 15:41:52 2012 +0100 Minor editing of our cmake/common.cmake file. commit 66287d18f7324fc2c0475e5d7f29205eb18188d8 Author: Alan Garny Date: Wed Feb 1 15:04:53 2012 +0100 Upgraded to Qt 4.8.0 (from Qt 4.7.4). commit e054567debd0296aa8c68ff42892f2b8c7a0c650 Author: Alan Garny Date: Wed Feb 1 14:45:21 2012 +0100 Added some code to test the Zhang et al. 2000 Rabbit SAN model, but it fails integrating the model at the moment...!? commit 3dddfdb639adf126082628050a2616e5a6c33ac3 Author: Alan Garny Date: Wed Feb 1 14:32:15 2012 +0100 Worked on our CellML Model Runtime class by adding some methods to retrieve the number of states, constants, etc. commit 76c91d63ea601eba85894f0624c3fe21196a8344 Author: Alan Garny Date: Wed Feb 1 13:09:28 2012 +0100 Added support for the CellML-related arbitrary_log() '\''C'\'' function. commit 3af5694181efa40fb2ad29a3e93441d16a5c1f5b Author: Alan Garny Date: Wed Feb 1 12:00:13 2012 +0100 Added support for the log() C function. commit 2f1a2548b5f6d27ce3877b6f03d14e043dcba4a6 Author: Alan Garny Date: Wed Feb 1 11:44:45 2012 +0100 Argh, I was defining a CellML-related math function in a non-cross-platform way. Also modified our test2 LLVM function. commit 55e4c6258e94cd826324ccdc85809ba76c860223 Author: Alan Garny Date: Wed Feb 1 11:20:56 2012 +0100 Minor editing of a comment. commit 41caea99f472505e5c6ec6097a978e8c40a0d797 Author: Alan Garny Date: Wed Feb 1 10:53:53 2012 +0100 Improved the generation of LLVM assembly for a number (there was the issue of a number being NaN or +/-Inf). Also added '\''proper'\'' for some mathematical functions (e.g. asinh()), and added support for the factorial function. commit f339c6b048ba383fd85291a4af508b38671f39d7 Author: Alan Garny Date: Tue Jan 31 15:17:10 2012 +0100 Oops, I had overlooked a couple of files that needed updating after adding support for some C functions. commit 068bf7823a330f3422f0dd0a29afd8f588d330fd Author: Alan Garny Date: Tue Jan 31 15:05:12 2012 +0100 Added support for the ceil() and floor() C functions. commit 248f1a2fb1000a2e2d24da16737ced72dda67e27 Author: Alan Garny Date: Tue Jan 31 15:00:26 2012 +0100 Added support for the asin(), acos(), atan(), asinh(), acosh() and atanh() C functions. commit 9702d4ea289f05a2cac3d28b53ce150fc0cd0278 Author: Alan Garny Date: Tue Jan 31 14:53:25 2012 +0100 Added support for the sinh(), cosh() and tanh() C functions. Some minor improvements to the equation simplifier (I had overlooked simplifications for fabs() and exp()). commit 6a1c0a39cd0c3229926e6f961bd29ff543d79656 Author: Alan Garny Date: Tue Jan 31 14:31:34 2012 +0100 Fixed a small issue with the updating of a CellML model'\''s runtime. Also added support for the fabs() C function. commit 8c2ed42204318210908e9464692589bd2e058f10 Author: Alan Garny Date: Tue Jan 31 13:00:12 2012 +0100 Minor improvement to the generated LLVM assembly code. commit 775e7da1742bb288c9680a5f8dc2c5ebaf349fc0 Author: Alan Garny Date: Mon Jan 30 18:43:53 2012 +0100 Fixed a silly problem of savings OpenCOR'\''s settings upon restarting after having changed which plugin should be loaded. commit 112afb9173a0055921cdf5826c2d65bd1b037fe9 Author: Alan Garny Date: Mon Jan 30 17:44:36 2012 +0100 Simplified the scanner/parser for our '\''C'\'' language. Indeed, we don'\''t want/need to support certain operators. commit b949bdb9ba97cb5b18be655e71fbccf1ae088848 Author: Alan Garny Date: Mon Jan 30 14:50:24 2012 +0100 Some refactoring of code, especially for the CellML model runtime. commit 52d1da72aa93d5ca2fcb80f7c40d6a54131cf122 Author: Alan Garny Date: Mon Jan 30 13:32:03 2012 +0100 Improved CellmlModelRuntime::update() based on the CellML API code (CDA_CellMLIntegrationService::compileModelODE() and CDA_CellMLIntegrationService::compileModelDAE()). commit 971cf42deb342db2fb41cf25a4b0e7f35ee59021 Author: Alan Garny Date: Mon Jan 30 11:48:26 2012 +0100 Simplified the update of a CellML model runtime. commit f61e61f5f7803373d549da9acc9643ab07966faf Author: Alan Garny Date: Sat Jan 28 18:30:37 2012 +0100 Added some debugging code to our compiler (since we are not fully done with it yet, so it'\''s good to be told what'\''s missing, if anything). commit c9ec127cb2f06c4c4fba750755a4661e361de299 Author: Alan Garny Date: Sat Jan 28 17:16:52 2012 +0100 Minor improvement to the compilation of a function. commit 39ff9cb5b7f92d9920ab7ee95a1da045818d479b Author: Alan Garny Date: Sat Jan 28 16:00:14 2012 +0100 Slight improvement to the simplification of an equation. commit f5eddd68011c346f05948267826a11c321738a96 Author: Alan Garny Date: Sat Jan 28 13:40:08 2012 +0100 Minor improvement to our plotting of the van der Pol model. commit 93c8754c5f456bc02c62ce76d8fc8ece38b8f406 Author: Alan Garny Date: Fri Jan 27 20:13:36 2012 +0100 Some work on the CellML model runtime. Also done with demoing the running of the van der Pol model. commit 1c45e4cb40d8289ab4b5fd7e601c0fe77ce780de Merge: aa176472b 2e04bb6ba Author: Alan Garny Date: Fri Jan 27 18:45:09 2012 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 2e04bb6bad4c96a173c51f0d62fa20062519fc99 Author: Alan Garny Date: Fri Jan 27 18:20:10 2012 +0100 Getting ready to compute a model, but only for demonstration purposes, so everything will be hard-coded. commit 0cb5c265c1918f4f5d6642e9eff877360ee3b9fc Author: Alan Garny Date: Fri Jan 27 17:53:37 2012 +0100 Fixed a small memory leak and bullet-proofed the code a bit. commit 59bcf16f7ecc7f946db7b2e244392aa7023175cd Author: Alan Garny Date: Fri Jan 27 17:16:33 2012 +0100 Some refactoring. Support for some one- and two-argument functions. Improved/better simplification of an equation. Improved parser and scanner. commit aa176472b944a14f54f48a6b0fca57e5c6b56152 Author: Alan Garny Date: Thu Jan 26 23:32:25 2012 +0100 Minor update to the developer documentation. commit 097a2f568ffc4b13706c21d50e54e5c106d1f91f Author: Alan Garny Date: Thu Jan 26 18:51:02 2012 +0100 Minor editing. commit 6840c44061ce7b5bf08a17b51f256aa0ec8bdade Author: Alan Garny Date: Thu Jan 26 18:47:43 2012 +0100 Some refactoring which will make our computer engine code cleaner and more maintainable. Also added another LLVM function test. commit 005809c86aae9cec32e951fa7690bf88baa43658 Author: Alan Garny Date: Thu Jan 26 17:18:10 2012 +0100 Some minor refactoring. commit d8cc3035cebff8b66a822261186090073ca79b81 Author: Alan Garny Date: Thu Jan 26 16:55:20 2012 +0100 Fixed yet another small problem with the retrieving of an assembly code index. Also added support for multiplications and divisions. commit 8eaac2dd4f14c204cd1b28e0c1935e55fd2aef39 Author: Alan Garny Date: Thu Jan 26 16:46:58 2012 +0100 Fixed a small problem with the retrieving of an assembly code index. Also added support for subtractions. commit 0dc20dda1a304dbf22a056d7a6894a060fa99f19 Author: Alan Garny Date: Thu Jan 26 15:56:59 2012 +0100 Can now generate LLVM assembly code for the addition operator. commit 237584d77988487e0b04bbd3cf70f4f0f52f8395 Author: Alan Garny Date: Thu Jan 26 14:21:46 2012 +0100 More work towards the compilation of an equation. commit e93cf64f51ce4cd92c14d6f42010a52909f41905 Author: Alan Garny Date: Thu Jan 26 10:47:29 2012 +0100 Re-added improved LLVM assembly code generation. Some cleaning up. commit a05ad4676a441a306c14999ab6ad0300b65a5842 Author: Alan Garny Date: Wed Jan 25 17:41:04 2012 +0100 Can now generate and run (after it has been parsed) LLVM assembly code for the initialisation of parameters. commit ea34a2022660b55e069bce39a4a4742bc1ef3ede Author: Alan Garny Date: Wed Jan 25 16:21:07 2012 +0100 Some more support for the simplification of an equation. commit f3537a91dea4c017c200188a3294ea59c3203619 Author: Alan Garny Date: Wed Jan 25 16:15:31 2012 +0100 Further work on the simplification of an equation. commit bf2e12f2b5fdc058e3cb6899ce8b15f4b199f9d4 Author: Alan Garny Date: Wed Jan 25 15:59:29 2012 +0100 A bit more simplification of an equation. commit 04da2da0e0e811baa9f200d7dd5937b2120629b6 Author: Alan Garny Date: Wed Jan 25 15:54:26 2012 +0100 Started work on simplifying an equation. commit d10a03ea23f636e42a64f3e458b073fa82bdad6d Author: Alan Garny Date: Wed Jan 25 14:14:18 2012 +0100 Some minor cleaning up. commit 5773536a6d33e0c1f7e55a8575dce246fb31acfc Author: Alan Garny Date: Wed Jan 25 13:56:04 2012 +0100 Can now generate some LLVM assembly code for the return '\''equation'\'' of a '\''C'\'' function. commit 695e6f7012db4b089a8cca3189a43b4b0d71c256 Author: Alan Garny Date: Wed Jan 25 09:50:48 2012 +0100 It shouldn'\''t be the parser'\''s job to optimise the '\''C'\'' code that it parses. commit 6d6fa10d206b8ce6e51fdea9623ff7644c78c7de Author: Alan Garny Date: Tue Jan 24 19:52:04 2012 +0100 And still more work on our parser. commit 5d7b22c19e34b2f90bd8dd63c95cd2ec3a2c476d Author: Alan Garny Date: Tue Jan 24 16:58:33 2012 +0100 Yet more work on our parser. commit 1a2f5427a772cbe36ea7ec98181589d932d4ffd1 Author: Alan Garny Date: Tue Jan 24 16:35:42 2012 +0100 Still more work on our parser. commit 7161441d7a6301c1577cd3534143456e2b296391 Author: Alan Garny Date: Tue Jan 24 16:23:52 2012 +0100 More work on our parser. commit bd30957c78580ab201833c133078092f154be063 Author: Alan Garny Date: Tue Jan 24 15:20:42 2012 +0100 Some more work on our generation of an internal representation of an equation. commit 63f729992f2402be7f195fce1117a2d64f4c50a5 Author: Alan Garny Date: Tue Jan 24 14:53:23 2012 +0100 Minor fix to our parseGenericExpression() method in our Computer plugin. commit b87214d4924b2d4811cf086af98801b534aca77c Author: Alan Garny Date: Tue Jan 24 14:49:10 2012 +0100 Re-added our long-deleted ComputerScannerToken::symbolAsString() method (it'\''s proving too useful for debugging purposes). commit a07b5818c61de5a5634db576a9724cae5aa9cecb Author: Alan Garny Date: Tue Jan 24 14:14:56 2012 +0100 Reduced possible memory leaks in our parser. commit 8343faada5449c344732dd1a9a811f8edb63a2eb Author: Alan Garny Date: Tue Jan 24 14:08:17 2012 +0100 Fixed a couple of typos. commit 56a1e1379569c4fd539848ee23185cf22187400c Author: Alan Garny Date: Tue Jan 24 14:06:20 2012 +0100 More work on generating an internal representation of an equation. commit fc94c49b973c071cbd2be525a8e0f285fc3bd8b0 Author: Alan Garny Date: Tue Jan 24 09:59:16 2012 +0100 Working on our parser and having it generate an internal representation of an equation (which can then be used to generate some LLVM assembly code). commit 50220682b84ffdf216177c8bae72d66e45bcf911 Author: Alan Garny Date: Mon Jan 23 18:04:11 2012 +0100 Minor fix to our parser (we were not parsing cond?trueStmt:falseStmt properly). commit 623e52a5bc810afd5cb7ebd9ef8c1349eedb7ebf Author: Alan Garny Date: Mon Jan 23 17:37:05 2012 +0100 Working towards generating our equation data structure. Also some cleaning up, and simplified the LLVM assembly code we generate (indeed the previous version might have a bit too specific and therefore too risky). commit 2ad38dd4f7d04bc931e83ac5030cb0837a244b61 Author: Alan Garny Date: Mon Jan 23 15:16:29 2012 +0100 Support, in our Computer plugin, double and double* function parameters. Some slight code improvements. commit 2f0c61e951e641327916cbf89fa4bbe98edf27a0 Author: Alan Garny Date: Mon Jan 23 13:59:32 2012 +0100 Made the CellML validation code slightly faster by disabling the retrieval of the line/column of a warning/error (!!). commit 9fb2ae700df323f7b32c1ef47455bf563ae7164a Author: Alan Garny Date: Mon Jan 23 13:41:54 2012 +0100 Minor cleaning up. Re-added a simple CellML test. commit 68684ba9c49101d481a9b0005338d180f87bba55 Author: Alan Garny Date: Fri Jan 20 18:29:26 2012 +0100 Updated some dependencies for our new SingleCellSimulation plugin (the need for those dependencies only shows up when trying OpenCOR on Mac OS X). commit 0fa0a0160a2d1db7b14a7c6928ad6556232cd2d7 Author: Alan Garny Date: Fri Jan 20 18:19:17 2012 +0100 Updated our new SingleCellSimulation plugin. commit f8582e4085d1816ae6386865393ee96f4b8e7228 Author: Alan Garny Date: Sat Jan 21 06:04:56 2012 +1300 Renamed the CellMLSimulation folder to SingleCellSimulation. It'\''s not a perfect name, but the idea is that using this plugin you can run any kind of single '\''cell'\'' model, be it encoded in CellML or another format (e.g. SBML in the future). commit 3cdac865670969c0b9f46a0eef527759464a069a Author: Alan Garny Date: Fri Jan 20 17:46:34 2012 +0100 Moved our former CoreSimulation plugin contents to our CellMLSimulation plugin. Also some minor editing here and there. commit c4f29659950262f95207657ddbdd9d7b63e187d6 Author: Alan Garny Date: Fri Jan 20 16:32:38 2012 +0100 Some (heavy) refactoring of our CentralWidget widget. commit 507e54ee80cdf4a992b97c93ba9518aa3f7358e9 Author: Alan Garny Date: Fri Jan 20 09:57:08 2012 +0100 Allow support for 1+ simulation views. commit 4749365559ad523f5d9916a7b57718509aea0272 Author: Alan Garny Date: Fri Jan 20 09:48:28 2012 +0100 Reverted some code for the addition of a view. Also stopped making the CoreSimulation plugin *the* simulation plugin. In the end, we may want several simulation plugins (for single '\''cell'\'' simulation, multi-'\''cellular'\'' simulation, etc.) commit 68dc073edbdb6985939f4b881e28279e60404aab Author: Alan Garny Date: Fri Jan 20 09:32:36 2012 +0100 Removed some test code from our Raw CellML view plugin. commit a16f82766d14822a9f8827a1b9ff4a1c8b944ddd Author: Alan Garny Date: Thu Jan 19 17:15:19 2012 +0100 Allowing a view to be associated to a particular MIME type. This is going to be useful for the simulation mode, since we want only one widget per MIME type (as opposed to as many widgets per view as there are opened files). commit e7fee30ff6420bfd8836d12492550e363e2eaf69 Author: Alan Garny Date: Thu Jan 19 16:28:10 2012 +0100 Minor improvement to our central widget. commit 90d63f43cafc2dec27916ca09f67a64694978314 Author: Alan Garny Date: Thu Jan 19 16:12:28 2012 +0100 Improved our central widget (Core plugin) and have our OpenCOR logo gets displayed within the contents widget, thus allowing the user to see what modes/views are available, even when no files are opened. commit 88cc95d9f2ca7efbb0182ce6b4880be6db4ceeeb Author: Alan Garny Date: Thu Jan 19 10:27:33 2012 +0100 Minor editing. commit 4a8d47e7ea9383053d654225a2189b33098fd0f6 Author: Alan Garny Date: Wed Jan 18 16:48:57 2012 +0100 Fixed a small problem with the resetting/initialisation of our parser. commit 82b433dcb682ecdbe3e171ad18bb043e24c48a66 Author: Alan Garny Date: Wed Jan 18 16:12:18 2012 +0100 Fixed a small problem in our parser. Testing our parser/scanner. commit daa8e0a724d851e6fcd7d88d31f4aaa46febf0f5 Author: Alan Garny Date: Wed Jan 18 14:27:01 2012 +0100 Some more work on the parser/scanner. commit 0728539cef371d572ee1102a08ccba9e23c620b4 Author: Alan Garny Date: Wed Jan 18 10:52:07 2012 +0100 Removed the support for ++ and -- in the parser. Surely, we don'\''t want to have to deal with this...?! commit 94e688de437d9603090c92d113586b9d9ef2e08c Author: Alan Garny Date: Wed Jan 18 10:26:36 2012 +0100 Some minor refactoring. commit aa4bd9f09442c908c6a3ed6a1d81fc49b97f8af3 Author: Alan Garny Date: Wed Jan 18 09:42:46 2012 +0100 Minor editing. commit ac3a5d018d71ec04a9d7925be472df288e4deca6 Author: Alan Garny Date: Tue Jan 17 18:29:55 2012 +0100 Some more refactoring. commit 5471280f72f333edaa2b308e3e1b0c98095c56f0 Author: Alan Garny Date: Tue Jan 17 18:21:51 2012 +0100 An insane commit which is the result of various refactorings and cleaning ups. commit c2b341f446f2071908fa450ee27dcb85ee5f8ceb Author: Alan Garny Date: Tue Jan 17 13:34:59 2012 +0100 Some more refactoring of our Computer plugin. commit 48cc2d3c6e884fb3d1264744783e3f421508b746 Author: Alan Garny Date: Tue Jan 17 11:43:48 2012 +0100 Some refactoring of our Computer plugin code. commit 476eef331ad6f6384475344f45b953c5b7c1d2f3 Author: Alan Garny Date: Tue Jan 17 10:06:38 2012 +0100 Minor refactoring. commit 28b45633d7c6c63c8d73ae49eb7c9b9cd987d010 Author: Alan Garny Date: Mon Jan 16 18:50:12 2012 +0100 Some further fixes to our parser. Note that there is a pending issue with parsePostfixExpression() and parsing something like: pParam[0] = pow(pParam[1], pParam[2]+pParam[3]); commit 0b954e7753554034246a14d355d449c5ea301ae7 Author: Alan Garny Date: Mon Jan 16 18:14:31 2012 +0100 Minor fix to our '\''C'\'' parser. commit e8e69def2720681df0db105c89dd46a3df08b697 Author: Alan Garny Date: Mon Jan 16 16:42:30 2012 +0100 '\''Fixed'\'' some EBNF grammars. commit 56e57fff01a52459b66c9add7594369722b910e0 Author: Alan Garny Date: Mon Jan 16 16:30:39 2012 +0100 Pretty much done with the parsing of a '\''C'\'' function (but no processing as yet). commit 88fd9aee9958d3f60a2f47fab570b7bb43b32a5b Author: Alan Garny Date: Mon Jan 16 13:17:13 2012 +0100 Improved our parseUnaryExpression method in the Computer plugin. commit 353215e220f135b08c3137eb1ea4515cc99881eb Author: Alan Garny Date: Mon Jan 16 11:59:31 2012 +0100 And still some more work on parsing a '\''C'\'' equation. commit ad8a322136c4f5e14cab6555726d204439e9ca4a Author: Alan Garny Date: Mon Jan 16 10:05:11 2012 +0100 Yet some more work on parsing a '\''C'\'' equation. commit 4913c2fde034f2886bba8c4d1efb4bf6208c948b Author: Alan Garny Date: Mon Jan 16 09:53:44 2012 +0100 Further work on parsing a '\''C'\'' equation. commit c86672648866e527858bf7a874769f792fc74063 Author: Alan Garny Date: Sun Jan 15 18:58:25 2012 +0100 Some more work on parsing a '\''C'\'' equation. commit 09da8d3c9cf6936734905c192ea75b6a2f31ff26 Author: Alan Garny Date: Sun Jan 15 00:32:48 2012 +0100 Added support for external functions and TBAA in our LLVM assembly code generation. commit e2f85b8a10de145229166d4833118e946928c18f Author: Alan Garny Date: Sun Jan 15 00:10:30 2012 +0100 Minor refactoring. commit af1ab576954384a5f80cc7bdeb7d8d6faea9b885 Author: Alan Garny Date: Sat Jan 14 10:50:05 2012 +0100 Some refactoring and improvement to our parsing of '\''C'\'' model. commit 62d639048b4d20e19e83097f7e7cd581840e4322 Author: Alan Garny Date: Sat Jan 14 00:52:56 2012 +0100 Started work on parsing C mathematical equations. commit 9bb84824a4bf4d46a36d372b4a1a3735931dd721 Author: Alan Garny Date: Fri Jan 13 19:37:04 2012 +0100 Removed our performance test (I just wanted to have it in Git). commit ef1a95bfeedc3d3f0e90f751a6c8b22b5f435384 Author: Alan Garny Date: Fri Jan 13 19:36:00 2012 +0100 Just wanted to convince myself that myself that JIT::runFunction() has a big overhead and... indeed, it does! Using our simple LLVM function, there is a ratio of ~1:900! commit a54f67033aedeb1349248f6e5cc649a032f1c84e Author: Alan Garny Date: Fri Jan 13 19:21:44 2012 +0100 Improved our LLVM test function to check the use of external functions (sin() in our case) and all works fine. This means that we, in effect, can run any CellML file on any processor supported by LLVM! :) commit f19b8eabd8fa60910e7fbcba3eed0477213b652f Author: Alan Garny Date: Fri Jan 13 19:04:47 2012 +0100 Ok, still learning about LLVM and indeed... the previous commit about creating a function stub, etc. wasn'\''t necessary. To use ExecutionEngine::getPointerToFunction() and then casting things properly is sufficient. I guess I got confused by the fact that things didn'\''t seem right when debugging using Qt Creator. However, since the same Qt Creator issue occurred with the previous commit, it'\''s pretty obvious that the issue is with Qt Creator, not least because the debug traces (using qDebug()) report the right results, so... commit 20c9b80f996a8cfb94e7e4e45ed30014442a2f7f Author: Alan Garny Date: Fri Jan 13 18:08:02 2012 +0100 Before, we had to use JIT::runFunction() to run an LLVM-based function. However, the overhead is too big, so now we create a stub for the function which allows us to make very quick calls. Note that the current code is not 100% right. Even though it seems to work, tracing it in Qt Creator results in the debugger getting a bit lost while everything works as expected using JIT::runFunction(). Hmm... commit ab657bc0705da4bce63aea10b165c2a7b57c5080 Author: Alan Garny Date: Fri Jan 13 10:31:25 2012 +0100 Testing the passing of an array of doubles to a LLVM-based function. commit 38c5058c2ef0ab36a7db4aeb7fbe9e6f5711d298 Author: Alan Garny Date: Fri Jan 13 09:50:51 2012 +0100 Minor editing to a comment. commit ae98b1efae620d44829b7e8306ef6bed4e7bb612 Author: Alan Garny Date: Fri Jan 13 00:18:05 2012 +0100 Removed the target data layout information that we generate as part of our LLVM assembly code. Indeed, it'\''s not necessary, since that information is part of the LLVM JIT execution engine... commit 32e0df8c54fd041deb753589224bf197381780df Author: Alan Garny Date: Fri Jan 13 00:01:56 2012 +0100 Fixed an issue with running some IR code in a LLVM JIT execution engine. commit 0c057f613dd7732e88264275e58297820d715337 Author: Alan Garny Date: Thu Jan 12 20:38:13 2012 +0100 Minor improvement to our LLVM code. commit c2028be809bac31147643f0347ae2bb97462d26d Author: Alan Garny Date: Wed Jan 11 18:06:11 2012 +0100 Some more cleaning up. commit e86ac84f46ead6a68c534dcb05759b9cc3b829fa Author: Alan Garny Date: Wed Jan 11 17:51:08 2012 +0100 Some cleaning up. commit b6c972a092e3ec78f8c8f33a53810de947550caa Author: Alan Garny Date: Wed Jan 11 17:23:22 2012 +0100 Fixed the translation file for the Computer plugin (which got a bit messed up following the renaming from Compiler to Computer). commit 2c08ab5bda0e11cd8366af0d4b40d687725f8da2 Author: Alan Garny Date: Wed Jan 11 17:12:02 2012 +0100 Renamed the Compiler plugin to Computer plugin. commit 2a69a100fec2a7ece8a98fb5c5a35bdf04d0c66e Author: Alan Garny Date: Wed Jan 11 16:55:38 2012 +0100 Renamed src/plugins/misc/Compiler to src/plugins/misc/Computer. commit e7bbc8028a36c559cad36bf116d267ba7f86fd10 Author: Alan Garny Date: Wed Jan 11 16:44:18 2012 +0100 Testing the execution of a '\''C'\'' compiled function. commit f36b669d1c8f6a9ce1b2fd71a4eeaa370a004ab6 Author: Alan Garny Date: Wed Jan 11 15:51:37 2012 +0100 Improved the compilation of a '\''C'\'' function by better handling errors. commit dc5da8729911dd9565eb532dc4a033c844f308fd Author: Alan Garny Date: Wed Jan 11 13:45:22 2012 +0100 Now generate some LLVM assembly code which is then parsed (by LLVM) to generate some IR code. We do this rather than generating some IR code directly using the LLVM API (which clearly works, but is not as convenient to use as the LLVM assembly code). commit 64fb2bb210cbcc93419e6d2929cf23c3b89319dd Author: Alan Garny Date: Tue Jan 10 21:34:47 2012 +0100 Minor editing. commit ddbe4793346a0ffcdb0c1a9d485a7205e0e8e4de Author: Alan Garny Date: Tue Jan 10 19:49:43 2012 +0100 Some more work on the generation of binary code using LLVM. commit 1f8912f9c4a52c894c0da7ad5ce524ac1b305d6c Author: Alan Garny Date: Tue Jan 10 17:28:21 2012 +0100 Started work on the generation of LLVM JIT code using. commit 9300058713634f637aea3be12f84b40a05fb7114 Author: Alan Garny Date: Tue Jan 10 16:35:27 2012 +0100 Can now parse/scan a number, be it an integer or a double. Slightly improved our scanner (by making it less error prone by replacing getChar() with getNextChar(), i.e. as we did when replacing getToken() with getNextToken()). commit cc3d0524eebe8a4d4ed035f421c27cc8714e221a Author: Alan Garny Date: Mon Jan 9 17:03:27 2012 +0100 Updated the Oxygen library from version 4.7.3 to version 4.7.97. commit df94ce1ee5c9d84795cb2981cbc25a569cdbb249 Author: Alan Garny Date: Mon Jan 9 15:54:08 2012 +0100 Our compiler can now parse parameters of a void/double function. commit 29bc9c788aef0ef989959634161a622edcea3adc Author: Alan Garny Date: Mon Jan 9 14:49:16 2012 +0100 Further work on our compiler parser. commit 04c03f64485ea134b562237b30788f656c674bf5 Author: Alan Garny Date: Mon Jan 9 14:28:36 2012 +0100 Refactored our compiler parser a bit, so that it'\''s less error prone. commit 5871b6d839b41fb12c35d0896a7b9d74fae0e108 Author: Alan Garny Date: Mon Jan 9 13:51:57 2012 +0100 Minor editing of a comment. commit ea1a2bd01d9ce2102561dcf778b9b5aa69e68bff Author: Alan Garny Date: Mon Jan 9 13:49:05 2012 +0100 A bit of refactoring of our compiler code. commit 9ab67226dd2bd4f7a7694f7d2bed1a3e98c500ec Author: Alan Garny Date: Sat Jan 7 22:17:41 2012 +0100 CRLF to LF. commit c52884cc619ae1a193a70e43e118af6859270224 Author: Alan Garny Date: Sat Jan 7 22:10:42 2012 +0100 Updated LibQxt from version 0.6.1 to version 0.6.2. commit 6c49845c39e962162442653b47740c2ec669e42a Author: Alan Garny Date: Sat Jan 7 19:12:55 2012 +0100 Minor update to our reduced C grammar. commit 43ad8dd7f350761ccf75bf84e2414a3f37bf6d1e Author: Alan Garny Date: Sat Jan 7 19:07:51 2012 +0100 Further work on our compiler parser. commit 9806af12f5c5371bd8453cafc4e6963c2c260496 Author: Alan Garny Date: Fri Jan 6 18:15:29 2012 +0100 Some more work on our compiler parser. commit f766baa6945d9b52c3ddda691ca999146124cf74 Author: Alan Garny Date: Fri Jan 6 17:44:45 2012 +0100 Argh, another minor fix to our scanner. commit 5a90b9843eb04dbf1d9fa265babc2980fa197c05 Author: Alan Garny Date: Fri Jan 6 17:40:21 2012 +0100 Minor fix to our scanner. commit 490764ee35c8014415b81106bc779bee21f82b62 Author: Alan Garny Date: Fri Jan 6 17:37:40 2012 +0100 Some minor refactoring. Started work on the compiler parser now that we have a basic scanner. commit 6ea6f8797ecdc1275786c024c084c469ad7bdde2 Author: Alan Garny Date: Fri Jan 6 16:02:44 2012 +0100 Can now scan: void test() {}. commit 43fd422a736a5485b5d49b7829a107b5f826ed09 Author: Alan Garny Date: Fri Jan 6 14:40:07 2012 +0100 Slight update to the developer documentation. commit c989fc989e5aa7fa5901d8172a9ea5ac5484944f Author: Alan Garny Date: Fri Jan 6 11:58:23 2012 +0100 Our compiler scanner can now recognise keywords. commit 3519e5c6f5125a3146ba69432b8091d3940d35e0 Author: Alan Garny Date: Fri Jan 6 10:39:57 2012 +0100 Further work on our compiler scanner. commit 4df2447da5afd2eb11c0452978086b29d6e3ce8e Author: Alan Garny Date: Mon Jan 2 22:27:15 2012 +0100 Yet more work on our Compiler plugin. commit fa654008d122b33026a509e1afb2f3c08b0fcc9a Author: Alan Garny Date: Mon Jan 2 14:51:41 2012 +0100 More work on our Compiler plugin. commit b4a2b821d8cc399467938941a928fc900e600cb3 Author: Alan Garny Date: Mon Jan 2 12:03:35 2012 +0100 Some more work on our Compiler plugin and some cleaning up of plugin-related code. commit 3f129ad503e317b60d0defed004170370fc3ecf7 Author: Alan Garny Date: Mon Jan 2 11:42:37 2012 +0100 Added a Compiler unit to the Compiler plugin. commit ad942eaa7bea23be5cf7dea3c3a39f11dcbffa0b Author: Alan Garny Date: Thu Dec 29 15:58:41 2011 +0100 Minor editing. commit 42b3b00bc48baec2f5e78ea69647512e13ba4e5b Author: Alan Garny Date: Mon Dec 26 10:56:15 2011 +0100 Minor build fix for our Compiler plugin. commit d087d38aab4ab4a15d537ef80d455e6d311f3210 Author: Alan Garny Date: Sun Dec 25 20:09:27 2011 +0100 Created a compiler plugin which will take some C-like code and generate some binary code on the fly using LLVM-JIT. Updated the type of some plugins. commit c51a5380f176d5f02db9ff9216d1da34dd9fa825 Author: Alan Garny Date: Fri Dec 23 10:48:56 2011 +0100 More work on our CellMLModelRuntime class. commit 583800768406d6f9dc09884a7ce6441537db35b7 Author: Alan Garny Date: Thu Dec 22 22:02:00 2011 +0100 Further work on our CellMLModelRuntime class. commit e6f92231394c151068acd8aab38d5508051799da Author: Alan Garny Date: Thu Dec 22 20:59:22 2011 +0100 Slight improvement to our CellML test code. commit 700a279686140bbb1c95bef3c3806a2fd69859c6 Author: Alan Garny Date: Thu Dec 22 20:35:25 2011 +0100 Further refactoring of our CellMLModelRuntime class. commit 9faaaac535213f10300a28edcc120fdd660e357c Author: Alan Garny Date: Thu Dec 22 17:56:18 2011 +0100 A bit of refactoring of our CellMLModelRuntime class. commit 700691a3dab79d8913f0b735bd606c8bf38c333d Author: Alan Garny Date: Thu Dec 22 14:08:35 2011 +0100 Overlooked something in our test overconstrained CellML model. commit 0735e2a28699bc31485c70b2cac136706a07181c Author: Alan Garny Date: Thu Dec 22 14:04:17 2011 +0100 Moved some CellML files to our new tests folder. commit 29999780baf0c8d6570985db540f480e5e21db4f Author: Alan Garny Date: Thu Dec 22 13:58:55 2011 +0100 Added some test CellML files. commit 689c0f66e613c908c5ee637c61b6b40611b5bf59 Author: Alan Garny Date: Tue Dec 20 16:21:53 2011 +0100 To call codeInformation->algebraicIndexCount() is not the right way to determine whether a model is a '\''simple'\'' ODE model or a DAE model. Instead, one should (still using an ODE code generator rather than a DAE code generator) check whether some equations have been flagged as needing a Newton-Raphson evaluation. commit d7df42bf9e596c7a84bf11deeb5618bf67c8da57 Author: Alan Garny Date: Tue Dec 20 15:24:52 2011 +0100 Was using the wrong kind of code generator to determine whether a model is a '\''simple'\'' ODE model or a DAE model. commit bd1d62ac57f8b77d21dd62dbd5b0548fcad017a3 Author: Alan Garny Date: Tue Dec 20 14:35:18 2011 +0100 Further work on our CellML runtime class. commit 008993a06be1452a8483f80b7c54ba8fe73c86f9 Author: Alan Garny Date: Tue Dec 20 10:16:05 2011 +0100 Improved the opening of a file (before, a new tab was always added at the end of the tabbar while no it'\''s added after the current tab). commit 3accf1f702726361ef218694d679b87a1c8f684d Author: Alan Garny Date: Mon Dec 19 17:50:23 2011 +0100 To retrieve what is causing a model to be overconstrained, underconstrained or unsuitably constrained is rather cumbersome using the CellML API, so giving up on it for now... :( commit 6f994ca5023dd4a5e0d2c97f1febe60079249836 Author: Alan Garny Date: Mon Dec 19 16:38:47 2011 +0100 Minor improvement to our work on generating a runtime for a CellML model. commit c8ae6da823ea2775c72df10cbd70d3b43161ec54 Author: Alan Garny Date: Mon Dec 19 16:05:17 2011 +0100 More work on generating a runtime for a CellML model. commit 1f526215b03b19c89a35cf8b2a0c2a47d8951d0c Author: Alan Garny Date: Mon Dec 19 14:00:52 2011 +0100 Working on generating a runtime for a CellML model. commit 8627e3628a277fa7ae0ccf93ef234f8a90a7e4d2 Author: Alan Garny Date: Mon Dec 19 13:39:00 2011 +0100 Minor editing. commit b1f80c56a67c8fa82d42cbcaff5e12b242df63b7 Author: Alan Garny Date: Mon Dec 19 13:33:51 2011 +0100 Some cleaning up in our CellMLSupport plugin. commit afc66e881cfcbde3cb17c8e59dce1af07c5cbf28 Author: Alan Garny Date: Mon Dec 19 11:23:03 2011 +0100 Reverted our attempt at using Clang (alongside LLVM). Indeed, not only is it yet another big library, but I couldn'\''t get the Clang interpreter example to compile within OpenCOR. Could it be that some Clang-related things are missing...? What is certain is that I did everything in the same way as I did for LLVM and while it works fine for LLVM, it doesn'\''t for Clang...?! commit 7004eeddb88990b7a2aea2765281b7dee3b6f02d Author: Alan Garny Date: Fri Dec 16 16:40:11 2011 +0100 Another minor editing of our LLVM CMakeLists.txt file. commit e7a0522413217b8697b367a6977ec6a827dd0313 Author: Alan Garny Date: Fri Dec 16 16:38:19 2011 +0100 Minor editing of our LLVM CMakeLists.txt file. commit 1795c580bfd3f9251d83ac28e8075f58a125504b Author: Alan Garny Date: Fri Dec 16 14:57:54 2011 +0100 Added the various header files for Clang (which is part of our LLVM plugin). commit 9e754b3a45363a07c51df841d8ece78c8944a803 Author: Alan Garny Date: Fri Dec 16 13:26:41 2011 +0100 Started work on adding Clang to our LLVM plugin. commit 537062c5b060908838b3e26e0c3942ff812c43ec Author: Alan Garny Date: Fri Dec 16 13:25:41 2011 +0100 Minor editing of our CMakeLists.txt file for our CellML plugin. commit 891e2b7979e4274df5f4ddd345890737f441974d Author: Alan Garny Date: Thu Dec 15 18:50:31 2011 +0100 Addressed a small issue of uint32_t not being defined on Linux. commit d3a9f480fae90d38ae6ff990d103e164a8ed2c01 Author: Alan Garny Date: Thu Dec 15 17:39:08 2011 +0100 Just keeping track of some CellML-based code that I am '\''playing'\'' with. commit 1f0ee02ceb42826f03f64f9c4a6dce79e6b26424 Author: Alan Garny Date: Thu Dec 15 11:35:00 2011 +0100 Some further refactoring of our CellMLSupport plugin code. commit 7ff5b3dc31708977c2b50bda2c64c8ae79a11f82 Author: Alan Garny Date: Thu Dec 15 11:07:04 2011 +0100 Some refactoring of the CellMLSupport plugin code. commit 84a091ee1329383a8cd1188f1c7ccffd3e75b3ed Author: Alan Garny Date: Wed Dec 14 18:36:02 2011 +0100 Worked some more on our CellMLSupport plugin. Did some cleaning up too. commit c563aeb2fc99457715022589b42eb121f4a2431f Author: Alan Garny Date: Wed Dec 14 18:26:17 2011 +0100 Minor improvement to our Help plugin. commit c1cd912ebb050988b2ed44c9d057e99a5185fe4b Author: Alan Garny Date: Tue Dec 13 18:06:31 2011 +0100 Minor editing. commit 42700077ca868fc932da963e8498f3a754021c98 Author: Alan Garny Date: Tue Dec 13 15:14:49 2011 +0100 Minor editing of our test DAE model. commit 83f9ffec0e4631b4b674035d0bc9e745e389ebba Author: Alan Garny Date: Tue Dec 13 13:50:20 2011 +0100 Updated some of our test CellML models. commit ab1d3d2116319bbfeaca897148835e32486fe68d Author: Alan Garny Date: Tue Dec 13 13:48:23 2011 +0100 Slight update to the developer documentation. commit ef8ede0c252fc5fc289ff782ebbb37187d88770e Author: Alan Garny Date: Tue Dec 13 13:19:49 2011 +0100 Removed a '\''fix'\'' which I thought was relevant, but is not (see https://tracker.physiomeproject.org/show_bug.cgi?id=3166). commit 637830f6fcf5579d974c65cb57a3584945fbc6bf Author: Alan Garny Date: Tue Dec 13 11:49:51 2011 +0100 Oops, silly me, I committed modifications to some our test CellML files which were only there for temporary testing reasons. commit 56dd01c74588a5a8e24d60e003f832e33a97f935 Author: Alan Garny Date: Tue Dec 13 11:47:10 2011 +0100 Minor reformatting of some of our test CellML files. Improved the message of a CellML issue. Addressed an issue related to the full instantiation of a model'\''s imports. commit dfcf218fe14ab4b47de79336276133b4decdfab3 Author: Alan Garny Date: Tue Dec 13 11:22:22 2011 +0100 Minor cleaning up of our test CellML files. commit 413f36f8b6f6e24922469cfa993f9e52e318772e Author: Alan Garny Date: Tue Dec 13 11:13:19 2011 +0100 Added a test CellML 1.1 model. commit 1a1aab257a0ba75886924c0370ad4572510666b3 Author: Alan Garny Date: Tue Dec 13 10:35:18 2011 +0100 Pretending that our CellML binaries already implement the cleaner C++ interface (see https://tracker.physiomeproject.org/show_bug.cgi?id=3108). commit 9180123875373ee7c5d64e3cb41b5ef99d17f201 Author: Alan Garny Date: Mon Dec 12 18:01:20 2011 +0100 Starting work on generating a runtime for a CellML model. commit 2fe861f190e26771389ccea6243e437ab2e1b23a Author: Alan Garny Date: Mon Dec 12 17:22:44 2011 +0100 Improved our validation of a CellML model. commit a20e1f0ee8362e4cda0ee8523ad96556383979ad Author: Alan Garny Date: Mon Dec 12 15:32:45 2011 +0100 More work on our CellmlModel class (in our CellMLSupport plugin). commit d52793883f5d981e1fc2cfcf5c84420747251229 Author: Alan Garny Date: Fri Dec 9 18:08:32 2011 +0100 Minor editing. commit 59f4d46f41a859f86e898ee2b24f345149a6b415 Author: Alan Garny Date: Fri Dec 9 17:58:54 2011 +0100 Some more CellMLSupport-related work. commit fe5906b3dfecea268c18c0a2ec3c6e48811bc589 Author: Alan Garny Date: Fri Dec 9 15:10:35 2011 +0100 Cleaned up '\''our'\'' CCGS code since this is not going to be the way to go about generating binary code. commit 7c198a6f1831e82cbb4f2c9aa6793152e304bf78 Author: Alan Garny Date: Thu Dec 8 17:52:24 2011 +0100 Some further work on our CellMLSupport plugin. Can now generate some C code (pretty much copied/pasted the CellML2C CCGS test code. commit 7fb31f1c908192b4b33fd2a959d0c09ee5acdf26 Author: Alan Garny Date: Thu Dec 8 13:13:18 2011 +0100 Addressed the issue of a file being dropped on our Scintilla editor, resulting in its text/plain (MIME) version to be inserted rather than opened. commit 930aec958be268f55354809752f8c4fef2145afe Author: Alan Garny Date: Thu Dec 8 11:41:49 2011 +0100 Minor editing of a comment. commit 70ea6b3f2b9a10a22dd1adef1970263052c4c016 Author: Alan Garny Date: Thu Dec 8 09:45:50 2011 +0100 Minor refactoring of some our CellMLSupport plugin code. commit ec8efe7e727bf7347a4bd7bd3886d100fe10292e Author: Alan Garny Date: Wed Dec 7 16:00:46 2011 +0100 Manually addressed the issue of QKeySequence::PreviousChild not working properly on Windows/Linux, and of QKeySequence::Quit not doing what I would have expected on Windows. commit 6ffe74bd9482a2d2ce97118aa245cdf976f01161 Author: Alan Garny Date: Wed Dec 7 15:27:21 2011 +0100 Some straightforward refactoring with regards to setting up shortcut for actions. Also addressed the issue of only one shortcuts being available (e.g. Close = Ctrl+F4 and Ctrl+W): I was using setShortcut(0 while I had to use setShortcuts() instead. commit 144daa84dd960372dd1863a83ee88b55baa20280 Author: Alan Garny Date: Wed Dec 7 15:08:37 2011 +0100 Now use QKeySequence to set shortcuts. This means that Qt decides on which shortcut should be used based on the operating system being used. Some strange things though: according to the documentation the close shortcut could be either Ctrl+W or Ctrl+F4 on Windows, yet only the latter seems to be working. More worryingly, the shortcut for selecting the previous file (QKeySequence::PreviousChild) results in Ctrl+Shift+Backtab which means... Ctr+Tab?! commit 9981c40559039d9cd44ed3dafa7ff3fb0d9c0f76 Author: Alan Garny Date: Wed Dec 7 13:54:45 2011 +0100 Minor update to the developer documentation. commit bef5fc00c382778733346c2ae9d3ee324015d5ce Author: Alan Garny Date: Wed Dec 7 13:43:47 2011 +0100 Improved our selection the previous/next file. commit 2c46677c61383920e5322e492986e8ccd92ac042 Author: Alan Garny Date: Wed Dec 7 13:26:54 2011 +0100 A couple of Mac OS X build issues. commit 4edeef3ee9aae7968f1564bf5223621181a88cd0 Author: Alan Garny Date: Wed Dec 7 13:12:07 2011 +0100 Allow to select the previous/next file from the keyboard. commit 1d8768e0a41b6afd4a980b8214eaeb1fdaf14136 Author: Alan Garny Date: Wed Dec 7 11:49:02 2011 +0100 Created a QScintillaSupport plugin that simplifies our use of QScintilla. commit 78d6d1efa0d1c694f061cf57449bd18e6e1cba8c Author: Alan Garny Date: Wed Dec 7 11:06:02 2011 +0100 Minor editing. commit 473c81bded710853e707ee597d2ecbc642020c76 Author: Alan Garny Date: Tue Dec 6 18:34:55 2011 +0100 Check that we are dealing with a CellML file before creating a new raw CellML view for a file. commit c2f9113f6482abcb1198f01afa777fbadf0bf856 Author: Alan Garny Date: Tue Dec 6 18:05:15 2011 +0100 Move the CellML MIME type from the CellML plugin to the CellMLSupport plugin since the latter now exists and is certainly more appropriate. Also fixed an issue of translation for the CellML MIME type (when trying to open a file and checking the available file types; only the English version used to be available because the CellML plugin didn'\''t support the internationalisation interface). commit 610602d0002b1b15ff4807e3f5865d871ed02eed Author: Alan Garny Date: Tue Dec 6 16:51:01 2011 +0100 Minor editing. commit 37908152ecc92e877e7389f5e8955374025b0fcb Author: Alan Garny Date: Tue Dec 6 16:00:34 2011 +0100 Minor refactoring. commit 88b1c179598483e846296ed32e06b19ced6c7f1c Author: Alan Garny Date: Tue Dec 6 15:02:47 2011 +0100 Started work on a CellML model manager. commit f4060bcfef111d2f711a87b3e94beebdf3773e39 Author: Alan Garny Date: Tue Dec 6 14:17:06 2011 +0100 Oops, forgot a couple of dependencies! commit 8e8e29075f73fb8436c72d65a340e973a74154ef Author: Alan Garny Date: Tue Dec 6 14:12:48 2011 +0100 Addressed a small Mac OS X problem with external dependencies in the RawCellMLView plugin. commit a542d6dfdf3ab560637f2d8cb16ea9ce4d22b561 Author: Alan Garny Date: Tue Dec 6 13:59:50 2011 +0100 Allow the use of FileManager as both a singleton and a normal class. commit cbae69f52006d3eacb0425d7b97d934c5decd127 Author: Alan Garny Date: Tue Dec 6 10:32:01 2011 +0100 Some straightforward refactoring of our CellMLModel plugin (now known as CellMLSupport plugin). commit 38ae48080c4fa039534f707eca444e3baa6ed39d Author: Alan Garny Date: Mon Dec 5 18:31:05 2011 +0100 Working towards our CellMLModel plugin which will handle the loading, validation, execution, etc. of a CellML model. Also, some minor cleaning up in the process. commit 4a9b24c42512930a99b77583269fd461c9eb53d7 Author: Alan Garny Date: Mon Dec 5 16:55:09 2011 +0100 Removed the CellML, LLVM, CVODE and IDA tests, now that we know they work fine. commit bfad9e9591788cae12d25661a1102ebcbdccb6ee Author: Alan Garny Date: Mon Dec 5 16:23:35 2011 +0100 Some minor cleaning up. commit a1178f31b59ad78c0b32388e4d08d9bb4fbeb089 Author: Alan Garny Date: Fri Dec 2 21:12:56 2011 +0100 Addressed some focusing issues. commit 73b1f20572b4d342ca4645c77b7a515676d77f11 Author: Alan Garny Date: Fri Dec 2 19:47:25 2011 +0100 Fixed an issue with regards to shutting down OpenCOR. commit cbcfbfc5f6f41b3f0892a8bb7e3cdd655ea8bf03 Author: Alan Garny Date: Fri Dec 2 18:55:54 2011 +0100 Keep track of the current mode/view from one session to another. commit f52e464357a26767e923535e713716bbec520371 Author: Alan Garny Date: Fri Dec 2 16:10:35 2011 +0100 Addressed a linker warning on Windows. commit 90af25de269cc489f21bdac07b480d27a82a952a Author: Alan Garny Date: Fri Dec 2 15:45:43 2011 +0100 Upgraded LLVM from version 2.9 to version 3.0 (nice upgrade!). While building a shared version of LLVM on Windows, I found out that a new version of MinGW got released on 18 November, so... had to update our MinGW dependencies too. commit a5e5c4ca463e1aff7a32fd5cbbe5adcb72b0f9f6 Author: Alan Garny Date: Fri Dec 2 10:14:49 2011 +0100 Updated the developer documentation. commit 7e05b65c945da92e1e9de5e643dd25675b3940d1 Author: Alan Garny Date: Thu Dec 1 18:57:39 2011 +0100 Fixed a warning issue on Mac OS X which was, in fact, the result of a bad copying/pasting in the CellML plugin CMake file. commit 0ce417bf04010aadf8d936f3beb1b8fa13ba8e68 Author: Alan Garny Date: Thu Dec 1 18:18:12 2011 +0100 Missing dependencies in our CellMLModel plugin. commit bb51b3030ac43a3e57ad32b31c577dbc7fdf2004 Author: Alan Garny Date: Thu Dec 1 18:13:45 2011 +0100 Some further work on our new CellMLModel plugin. commit 57ec93bb6bc5db084492e4438b0df74a44471e06 Author: Alan Garny Date: Thu Dec 1 17:44:43 2011 +0100 Starting work on a CellMLModel plugin (to handle CellML files using the CellML API). commit 7478a98bb142af5492a056deb7fd36de89ac459b Author: Alan Garny Date: Thu Dec 1 16:53:56 2011 +0100 Minor improvements to our CoreSimulation plugin. commit 92ca7d61fbb084acb83967b0f6227bfe76875da3 Author: Alan Garny Date: Thu Dec 1 13:42:59 2011 +0100 Fixed a small issue of trying to retrieve a view for a given file while no file is present. commit 90b9abfa69d2b18dea243a9cff03537aaac9847c Author: Alan Garny Date: Thu Dec 1 13:11:12 2011 +0100 Fixed a small issue with CellML not being properly referenced in the CoreSimulation plugin. This wasn'\''t an issue on Windows and Linux, but definitely one on Mac OS X. commit 0a9e1aceb0b92a7bc1678320a9226ded2fd21ed4 Author: Alan Garny Date: Wed Nov 30 18:25:36 2011 +0100 Had a first stab at our raw CellML view. commit a25d9687e9002176c369acda939bccb639fc48bb Author: Alan Garny Date: Wed Nov 30 16:50:20 2011 +0100 Fixed an issue with the QScintilla plugin (methods were not exported!) and makes use of QScintilla for our raw view plugin. commit dddb3b561133fa37a6b5c3ad6bf2f61d5f9599e5 Author: Alan Garny Date: Wed Nov 30 12:10:24 2011 +0100 Cleaned up our CMake code for building a plugin. commit bbcb5405d593d4b7133daefa3cf014c607a222c8 Merge: 86e087fdd 09f7c17d0 Author: Alan Garny Date: Wed Nov 30 11:45:51 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 86e087fdd4c738eca798b0df71ddc013eded9a79 Author: Alan Garny Date: Wed Nov 30 11:44:36 2011 +0100 Added a test for IDA in our CoreSimulation plugin. commit 09f7c17d0e882f7f0c73ee9f67bb4f250f553f9e Author: Alan Garny Date: Tue Nov 29 20:24:05 2011 +0100 CRLF issues. commit acbf49e53a908dd4af47814f6aef4563f52c2b31 Author: Alan Garny Date: Tue Nov 29 19:48:48 2011 +0100 Added a test for CVODE in our CoreSimulation plugin. As a result, fixed a small issue with the generation of a DLL on Windows. commit d15876276b9f2f5d5635bd4796e45db0cfbc6592 Author: Alan Garny Date: Tue Nov 29 18:36:02 2011 +0100 Moved the CellML test code to the CoreSimulation plugin. commit 98d29c4e7a0902a45459226894fb908d52b43bc1 Author: Alan Garny Date: Tue Nov 29 18:21:21 2011 +0100 Some refactoring to test some third-party plugins from within the CoreSimulation plugin. commit 3900a848baf737d9e9b5b4c67c0adda0efcedefd Author: Alan Garny Date: Tue Nov 29 18:00:03 2011 +0100 Fixed a small issue with IDA (which generates a warning on Linux, and maybe Mac OS X though I can'\''t test it at the moment). commit 7af48a92df9dccd333953e554ad319cbce30bcac Author: Alan Garny Date: Tue Nov 29 17:48:22 2011 +0100 Avoid duplicated files between CVODE and IDA. commit 260632725f17a9af91de939e78c04a383dccf6f1 Author: Alan Garny Date: Tue Nov 29 17:30:16 2011 +0100 Some cleaning up (argh!). commit f68439456fb1106215b7c9768248dfe950d69f3a Author: Alan Garny Date: Tue Nov 29 17:25:41 2011 +0100 Not quite sure what happened here, but some IDA files got deleted while just before the last commit, so... commit e5d44f643280ade1b6225253a52f2893c27987f5 Author: Alan Garny Date: Tue Nov 29 17:12:53 2011 +0100 The IDA plugin should now be fully functional. Also, non-MOC headers shouldn'\''t be included in the list of files that need checking for translations. commit aba7ee0cb913313350554d7abdf06619340481b8 Author: Alan Garny Date: Tue Nov 29 15:52:51 2011 +0100 Fixed a small issue with CVODE (which generates a warning on Linux, and maybe Mac OS X though I can'\''t test it at the moment). commit 692656fa11546cea67a4dbe88c77c00049a6c64b Author: Alan Garny Date: Tue Nov 29 15:22:52 2011 +0100 Argh, Git forgot a file! commit 08ff56303a0cd208885441a29861b80f1a49142b Author: Alan Garny Date: Tue Nov 29 15:21:21 2011 +0100 The CVODE plugin should now be fully functional. commit ba8d4bdd3539c8cc7c78699cfb9808c00008c066 Author: Alan Garny Date: Tue Nov 29 11:32:45 2011 +0100 Slight update to Qwt'\''s source code to avoid an annoying warning. commit 3c8724165cccafded8ead6f890d3d5ca9c04abea Author: Alan Garny Date: Tue Nov 29 11:00:55 2011 +0100 Added some basic code for our forthcoming CVODE and IDA plugins. commit 85efc92e4855cb6277551f71dd43cebecc801d2d Author: Alan Garny Date: Fri Nov 25 14:44:24 2011 +0100 Cleaned up our test LLVM code. Note that there is the issue of running OpenCOR (from outside Qt Creator) on Windows. When doing so, an error message pops up when closing OpenCOR. Not to call llvm::InitializeNativeTarget(); results in the error message not being shown...!? Now, what is strange is that llvm::InitializeNativeTarget(); should normally be called, so...?! commit 52e52e121c6e07f05689d6ff29fb0245d4b46605 Author: Alan Garny Date: Mon Nov 21 15:48:13 2011 +0100 Updated QScintilla to version 2.6 from version 2.5.1. commit f076c38c779181ea1ee132f378bc5257643573b7 Author: Alan Garny Date: Thu Nov 17 13:38:02 2011 +0100 Some more minor editing. commit 43f6418aa80c8f5b6dd1798a800c68f7d91b858e Author: Alan Garny Date: Thu Nov 17 13:34:56 2011 +0100 Minor editing. commit 458faaf7706fb2a28a00a9b2f0784598d25f31ed Author: Alan Garny Date: Tue Nov 15 18:33:49 2011 +0100 Minor editing of our LLVM readme file. commit ae518709877ec6f8db99cf4810fdc5e4a4a5a74b Author: Alan Garny Date: Tue Nov 15 17:36:03 2011 +0100 Improved the restarting of OpenCOR. commit 6871d4b3810aa06da85037bccfb4fdaef64b1a5b Author: Alan Garny Date: Tue Nov 15 17:08:10 2011 +0100 Minor editing of a comment. commit d64fe3bfc12aa2c9c345d670417adf423c94ca1f Author: Alan Garny Date: Tue Nov 15 16:47:41 2011 +0100 Fixed an issue with the loading of plugins (their loading state wasn'\''t properly stored/retrieved). commit f6e27403ff54f02e2e2e2d2a8b3e0c83df9a0265 Author: Alan Garny Date: Tue Nov 15 13:25:47 2011 +0100 Minor update to our LLVM test code. commit 1c94f3ea05239aa676edb19e2530cf38f5a2afed Author: Alan Garny Date: Tue Nov 15 11:44:55 2011 +0100 Cleaned up some of our CMake code. commit faf4175144e40205a99246a43388ec38691aff22 Author: Alan Garny Date: Tue Nov 15 09:28:43 2011 +0100 Minor editing of some of our CMake files. commit 06d95f66d88cb49910f1d1e3aa642346b29c7705 Author: Alan Garny Date: Mon Nov 14 19:03:19 2011 +0100 Slight refactoring of some of our CMake code. commit 4462da848f99c930c7ab549fbd9a177109851bb2 Author: Alan Garny Date: Mon Nov 14 18:02:14 2011 +0100 Finally got LLVM to work on Windows! Hurray! :) All along, I wrongly assumed that there was a problem with the way I was generating a shared version of LLVM. In fact, the problem was that I was using DLL Export Viewer (http://www.nirsoft.net/utils/dll_export_viewer.html) to check that functions were properly exported and since DLL Export Viewer reported no exported functions, I kept assuming that something had gone wrong. Someone suggested that I use PEInfo (http://www.pazera-software.com/products/peinfo/) and after doing so, I realised that the functions were properly exported and that the problem was that there was a broken dependency (on libpthread-2.dll which is part of the official MinGW, but not the version that is shipped with Qt...!). So, by manually copying that file over, now everything'\''s fine! :) commit 5bcd6985537dcb8ad7b4325f669588178de26aef Author: Alan Garny Date: Thu Nov 10 20:01:57 2011 +0100 Cleaning up of code. commit dcb17f3830a9cd8ae4efd49014c2d3fa84db215f Author: Alan Garny Date: Thu Nov 10 19:06:25 2011 +0100 Improved the plugins window by allowing to show or not selectable plugins only. Also cleaned up some unused code. commit 35592049088286f1214952fe5cc163a5278112d9 Author: Alan Garny Date: Thu Nov 10 11:16:15 2011 +0100 Minor update to our LLVM readme file. commit c59b1f9023616c216b7a8e9942e94956aec89a30 Author: Alan Garny Date: Wed Nov 9 17:46:23 2011 +0100 Minor improvement to our instructions for building LLVM as a shared library. commit 7fabcd026a85235ed5e208841a29e409599c8fdc Author: Alan Garny Date: Wed Nov 9 17:37:27 2011 +0100 Updated a comment. commit 7ad07cb058a6946c3bc891a211e4515b25b8498d Author: Alan Garny Date: Wed Nov 9 17:31:06 2011 +0100 By default, LLVM is built with embedded libstdc++ for Win32 DLL, so... commit 421828ae61edb27dda33a8c249e7904326b5a706 Author: Alan Garny Date: Wed Nov 9 15:11:11 2011 +0100 Minor update to our LLVM'\''s README file. commit 9dea8f0a733e04a75faa8ac1426387080f173ed7 Author: Alan Garny Date: Wed Nov 9 14:03:59 2011 +0100 Removed some CellML binary files which don'\''t appear to be required. Modified our CellML test code so we can an information message when CIS was able to compile a model. commit 3bf2d771ea9e90922793864fbab1f84ae5d78b0c Author: Alan Garny Date: Wed Nov 9 13:46:19 2011 +0100 Minor update to the README.txt file for building LLVM on Windows. Note that the DLL that gets generated doesn'\''t include any symbol...!? So, could it be the reason it doesn'\''t work on Windows...? (Could, because I have found another LLVM DLL (https://github.com/downloads/JakobOvrum/SDC/llvm-2.9-Win32-DLL.rar) that doesn'\''t contain any symbol either, so...) commit e21a5f3385801f049a9f35a2e84e303da9e675ad Author: Alan Garny Date: Wed Nov 9 10:52:48 2011 +0100 Minor cleaning up of our CMake files. commit b49c0b9c35e23bd3d48b2ce69a9e3cecee2266ab Author: Alan Garny Date: Wed Nov 9 10:49:10 2011 +0100 Got LLVM to work on Mac OS X. commit 675a18c40bebcda780748c67117bc12aacca230d Author: Alan Garny Date: Tue Nov 8 18:49:08 2011 +0100 Minor editing of the LLVM test code. Note: it works on Linux (both x86 and x64)! So, clearly something wrong with my handling of the LLVM binary on Windows and Mac OS X which is '\''good'\'', since it shows that the approach I have taken works. Just need to get things right on Windows and Mac OS X. commit ce20c2d9f5ae87541e1ef4abe58ee965562d79ab Author: Alan Garny Date: Tue Nov 8 17:19:19 2011 +0100 Minor update to the developer documentation. commit d5a9ba532c42004b82c1e405d51bb80a1c66b93e Author: Alan Garny Date: Tue Nov 8 16:29:50 2011 +0100 Minor refactoring of the LLVM test code. commit cdefcba8bdbcbf04e83368fd56985ee84ba9c21b Author: Alan Garny Date: Tue Nov 8 14:18:23 2011 +0100 Resumed our work on supporting LLVM by trying the example that comes with LLVM in the CoreSimulation plugin. However, the CoreSimulation plugin doesn'\''t get loaded, so there is something wrong somewhere... commit f6a65b3f9b0cb5e13901aab6c0f5e2d92ee184f4 Author: Alan Garny Date: Tue Nov 8 14:16:33 2011 +0100 Fixed a CMake issue following some cleaning up of our CMake files. commit 03938fa0acf3e4db32a8aae564ba05b1dcb7a2fe Author: Alan Garny Date: Tue Nov 8 13:13:44 2011 +0100 Some more cleaning up of our CMake files. commit 3b2fb30fd9cc166e8a7ae7a894fd48876843c429 Author: Alan Garny Date: Tue Nov 8 13:03:50 2011 +0100 Some cleaning up of our CMake files. commit b4860134e99abca839797727d025896be3871db0 Author: Alan Garny Date: Tue Nov 8 12:17:53 2011 +0100 Minor changes to the developer documentation. commit aa11d075b72cabab16e0827401344af6972985de Author: Alan Garny Date: Mon Nov 7 17:14:42 2011 +0100 Git remembered about some files that used to be ignored but which should now be added. commit 473a44ec1a01ce33755bbb576b574a9a7f3ecf83 Author: Alan Garny Date: Mon Nov 7 17:10:55 2011 +0100 Minor editing. commit 41a9aad3b0211d75086d8d7c541fae7c4e321b6f Author: Alan Garny Date: Mon Nov 7 16:55:33 2011 +0100 A few more LLVM-related files that were not properly accounted for by Git. commit 383f285b298024ff56c18a56992156f5d02ca393 Author: Alan Garny Date: Tue Nov 8 04:52:39 2011 +1300 Some more work on supporting LLVM. We do as for the CellML plugin, i.e. have binaries (shared libraries) which we can target using the plugin. It needs proper testing (and, most likely, fixing) now... commit fb84481a508cd60a65a742ad0318820d31cf4772 Author: Alan Garny Date: Mon Nov 7 16:46:19 2011 +0100 Updated the developer documentation. commit 0c153c7d3146bc66051380e71179261caa89a74d Author: Alan Garny Date: Fri Nov 4 19:53:15 2011 +0100 Minor editing. commit 6c5dbb8f6c671777bdbdf48c26c6377b98c3284e Author: Alan Garny Date: Fri Nov 4 19:40:57 2011 +0100 Minor refactoring for the CMake code to add a plugin. commit 841bda14f28a8e89e6ffce0e2312ca1cb6c098fd Author: Alan Garny Date: Fri Nov 4 19:25:13 2011 +0100 Minor editing. commit dc0ef032c35b01a47d195f529a9b3d9611be0013 Author: Alan Garny Date: Fri Nov 4 18:03:43 2011 +0100 Minor update to our LLVM readme file (for some reasons, MinSizeRel generates bigger files than Release on Linux and slightly bigger on Mac OS X, so...?!). commit 6039aa3c212f41cdba69e951a7c24d6817cdabfc Author: Alan Garny Date: Fri Nov 4 16:43:18 2011 +0100 Cleaned up the LLVM structure, since we are now aiming at using the binaries rather than compiling everything everytime which is rather time consuming for LLVM and is not that straightforward (i.e. not as easy as it was to include QJson for example). commit bb28f03541613b5eca705eacedb40545d6b544a9 Author: Alan Garny Date: Fri Nov 4 16:08:11 2011 +0100 Minor update to our Batch/Shell files/scripts, so that we can call makeproj in a similar way to make, e.g. "makeproj -j 1", rather than "makeproj 1" which then resulted in "make -j 1" being called. commit 986d56132758089f08272587fc80a08088d86276 Author: Alan Garny Date: Sat Nov 5 03:18:03 2011 +1300 Removed the Nanojit files (since we are very unlikely to ever use Nanojit; LLVM seems more like the way to go than Nanojit!). commit b705e7bbcc39b844653f58e55e60271abdaaeb7c Author: Alan Garny Date: Fri Nov 4 15:10:58 2011 +0100 Some more work on our LLVM support. Note though that I am wondering whether this is the best way to go about it. Indeed, it might be better/easier to just use the binaries?!... I.e. as was done for the CellML API... commit c191c38cb6ef250a0fbb7a38da1cac544f0acc6e Author: Alan Garny Date: Fri Nov 4 12:58:58 2011 +0100 We don'\''t want to use the LLVM namespace directly, so prepended the LLVM functions/types/etc. commit a61c4a55d015d88b3b7c50375d290b3c34a0e388 Author: Alan Garny Date: Fri Nov 4 11:50:12 2011 +0100 Removed our dependency on Nanojit. commit de32df7e797b6b857e6422f564a0bd1be0b5757b Author: Alan Garny Date: Fri Nov 4 11:42:29 2011 +0100 Some more work on supporting LLVM. commit 5b06c232ee8a6639bab3e94e5c0a49d67d3a709f Author: Alan Garny Date: Thu Nov 3 19:19:42 2011 +0100 A few more files that Git didn'\''t include in the previous commit. Note: OpenCOR doesn'\''t build at the moment. Still need to work on LLVM... commit b56248ba298a336c0a157d82be1ebc78b2aee589 Author: Alan Garny Date: Thu Nov 3 19:16:52 2011 +0100 Still working on supporting the JIT compilation side of LLVM. commit 8725e4cc381a79a2539112cfb6e57396b42f750f Author: Alan Garny Date: Thu Nov 3 18:52:31 2011 +0100 Minor updqte to our common CMake file. commit 0f19dadc3d54eb8ad71489e80965c38cc269b9d9 Author: Alan Garny Date: Thu Nov 3 17:23:22 2011 +0100 Minor update to the developer documentation. commit 57b50edc5deb166d008043e58a6f4f657738a919 Author: Alan Garny Date: Thu Nov 3 16:19:08 2011 +0100 Thinking about possible conflicts of filenames with external libraries or, more simply, trying to respect what third-party developers tried to achieve, which in the case of QScintilla means including header files in the Qsci folder, hence we remove it from our list of '\''supported'\'' folders. commit 0d344faec6a5eac703020d81404a583153e54514 Author: Alan Garny Date: Thu Nov 3 16:02:01 2011 +0100 Cleaned up some Nanojit code in the CoreSimulation plugin. commit a0f011e1d6d727051101a2633dd4002abdd5eb7d Author: Alan Garny Date: Thu Nov 3 15:44:39 2011 +0100 Starting work on supporting the JIT compilation side of LLVM (as a possible replacement for NanoJIT). commit 22fd017c71bc3baf3c109c2a30a5fcb72cca88d3 Author: Alan Garny Date: Tue Oct 18 22:34:04 2011 +0200 Added a few things to our Nanojit plugin. commit c2825990c465f8024a6954240336acea0f1227c4 Author: Alan Garny Date: Tue Oct 18 21:25:07 2011 +0200 Slight update to the developer documentation. commit f57c3faca1977282b9cdaec51e1d4427c8cbcd8f Author: Alan Garny Date: Mon Oct 17 23:59:19 2011 +0200 Hmm, it'\''s not the CellML plugin which should require our new Nanojit plugin, but the CoreSimulation plugin, so... commit 8dfa1d85449719c1442560c2786d8d1ea917cd10 Author: Alan Garny Date: Mon Oct 17 23:52:40 2011 +0200 Minor cleaning up for our Nanojit plugin. commit bf6c5bd48b3291f560aab48dc638410cab16ec56 Author: Alan Garny Date: Mon Oct 17 23:51:59 2011 +0200 Added a couple of header files which I had overlooked for our Nanojit plugin. commit dcfe9436696ab7fcfce6627072e68593e0236bf9 Author: Alan Garny Date: Mon Oct 17 23:41:15 2011 +0200 Added header files to the Nanojit plugin so that other plugins can really make use of Nanojit. Also added the x64 files which I had completely overlooked! commit 8d11db95cdb3d9d430386e571f5fd1441cb929b9 Author: Alan Garny Date: Mon Oct 17 23:35:17 2011 +0200 Made the CellML plugin depend from our new Nanojit plugin. Fixed a minor issue with our new Nanojit plugin. Updated the developer documentation. commit ad27ae2d2730d424180e5f729359bd9afaf2cd3d Author: Alan Garny Date: Mon Oct 17 23:14:07 2011 +0200 Oops, forgot to update the main CMakeLists.txt. commit 1cb4928b871fefbf5b4dff86cfd1d42dceb063f5 Author: Alan Garny Date: Mon Oct 17 23:13:22 2011 +0200 Added a plugin to get access to Nanojit. commit 83a96e123cb66066e06a868ce1aa7f53fb6b4426 Merge: 8394eb05b e080bfdec Author: Alan Garny Date: Mon Oct 17 21:22:22 2011 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 8394eb05bf4b4465ae178b3cdd7b52a6efa4f510 Author: Alan Garny Date: Mon Oct 17 21:21:43 2011 +0200 Slight improvement to the CellML plugin. commit e080bfdec2173e9c6666b01680773db649e459d2 Author: Alan Garny Date: Sat Oct 15 15:19:05 2011 +1300 Some more minor edits (for cleanproj[.bat] this time round). commit 8a094cc89b3504c87d2df44be52a029976cf164b Author: Alan Garny Date: Sat Oct 15 15:16:10 2011 +1300 Minor editing of runproj.bat. commit 39b51030e4588ca47404b45f74554976f091de3f Author: Alan Garny Date: Fri Oct 14 16:59:26 2011 +1300 Minor update to the user and developer documentations. commit e91051e349b391ce35f1dc0795d2e67912ca10f0 Author: Alan Garny Date: Thu Oct 13 19:03:19 2011 +1300 Finally done with the adding of separators to make it easier to read OpenCOR'\''s source code! commit 6dd7f432614eb4f7590a62f233d8e92fb3ecd4da Author: Alan Garny Date: Thu Oct 13 18:42:08 2011 +1300 Yup, yet more adding of separators to make it easier to read OpenCOR'\''s source code... commit 89b079ab31a37232388f3848d1120883a9a83343 Author: Alan Garny Date: Thu Oct 13 18:34:41 2011 +1300 And some more adding of separators to make it easier to read OpenCOR'\''s source code. commit 3c730fae7784087aa6d7be4a05ba2e929ba7c27c Author: Alan Garny Date: Thu Oct 13 18:25:55 2011 +1300 Some more adding of separators to make it easier to read OpenCOR'\''s source code. commit cf7bca491d0b0e3ece8c6be6c026172d99cad0e9 Author: Alan Garny Date: Thu Oct 13 18:17:44 2011 +1300 Added some separators to make it easier to read OpenCOR'\''s third-party plugins'\'' source code. commit c00162e63ffc576578cc0a57dca04e3057ceab12 Author: Alan Garny Date: Thu Oct 13 18:09:26 2011 +1300 Started adding some separators to make it easier to read OpenCOR'\''s source code. commit 774e2f85e8d5cacce94379808e733637e29d4b02 Author: Alan Garny Date: Thu Oct 13 16:40:31 2011 +1300 Added support for OpenGL in OpenCOR since we will most likely end up using it. Alternatively, someone might want to create an OpenGL-based plugin, so... commit 76debecc7eac7898afee8d55ed73a16e7a4ee30b Author: Alan Garny Date: Wed Oct 12 17:33:55 2011 +1300 Minor update of the error messages generated by our CellML plugin when trying to test the CellML API binaries. commit 3bbe4c74cbf722db614ef6493ab7271da7d4b3a7 Author: Alan Garny Date: Wed Oct 12 15:45:35 2011 +1300 Removed the frame around the editing Raw view. commit 08de7b8ec24568402a33aa2886e4bf727c65b572 Author: Alan Garny Date: Wed Oct 12 12:13:01 2011 +1300 Handle the change of file selection in the central widget. commit 244e27e3d44f560d258024431853fe5ad2a256cd Author: Alan Garny Date: Wed Oct 12 12:09:20 2011 +1300 Fixed a small problem with our GuiInterface::viewWidget function. commit aebec1976caaf326a500e700c77f011c46b748d3 Author: Alan Garny Date: Wed Oct 12 10:02:11 2011 +1300 Updated our test CellML files. Mocked something up for the RawView plugin (for demonstration purposes). commit b7f888d694bcbcd19821abb5754b69ced44e723a Author: Alan Garny Date: Wed Oct 12 09:11:28 2011 +1300 Minor fix to the CellML plugin. commit 08cb7bbce1abb44d46092f9403f9c0752c90d1bd Author: Alan Garny Date: Wed Oct 12 09:07:49 2011 +1300 Makes use of that pre-computed test CellML results in case something went from with our use of the CellML API binaries. commit 247554e692a12875c9bf02f5ffa56df399af9ecf Author: Alan Garny Date: Wed Oct 12 09:07:08 2011 +1300 Added some pre-computed test CellML results (just for demonstration purposes). commit 39836573026cac1c072635e28360b71f40bc7c27 Author: Alan Garny Date: Wed Oct 12 08:58:58 2011 +1300 Replaced QMessageBox calls with qDebug ones in the CellML plugin (used to test the CellML API binaries). commit 2adbe0c3eda44cab0680c2d882b2cdee4eba4cdd Author: Alan Garny Date: Tue Oct 11 17:54:48 2011 +1300 Fixed a small problem with the no view widget message. commit da8d0e71bff99cd47e6efde9b436abf7feaac30a Author: Alan Garny Date: Tue Oct 11 16:25:58 2011 +1300 Put a light frame around the central widget'\''s contents, thus making it look better. commit 170a6145762856631c1e5fb07d484f5d6706bfb4 Author: Alan Garny Date: Tue Oct 11 16:10:09 2011 +1300 Allow the no view warning message to be word-wrapped. commit 9e9a4fb24598e0121101b1a03a9c792abf9a58cc Author: Alan Garny Date: Tue Oct 11 15:54:34 2011 +1300 Added a warning message in case a view is selected for a particular file name, but the view doesn'\''t support the file type of that file. Reworked the way plugins provide information about the name of the views they create. Also improved the retrieving of a widget for a particular view and file name (it used to work only for the case where a plugin creates only one view while we want to allow the creation of one or several views). Some minor cleaning up. commit 04313d72b91e5b23ea31313beef371c438ae2115 Author: Alan Garny Date: Mon Oct 10 18:29:14 2011 +1300 Minor cleaning up for the CellML plugin. commit 8589f57385912b830b4eed6ab2855e3885a5e089 Author: Alan Garny Date: Mon Oct 10 17:58:59 2011 +1300 Minor change to a comment. commit 56aae214079fd9192120b4b541d2542e00216b31 Author: Alan Garny Date: Mon Oct 10 16:18:31 2011 +1300 Plotting, as part of the CoreSimulation plugin, some pre-computed CellML simulation results. commit 34081d627e94981c6d6f69873437a9a2ec09f853 Author: Alan Garny Date: Fri Oct 7 23:16:39 2011 +1300 Minor rephrasing of a comment. commit d7678667da505947c309be68db29172c60f96ef0 Author: Alan Garny Date: Fri Oct 7 22:24:27 2011 +1300 Removed a couple of files that are effectively empty and therefore not useful. Also cleaned up misc/utils.cpp and added '\''support'\'' for Mac OS X 10.7 (Lion). commit e9b3b65cfe260bf908b1abfa4e6e1bd88d08844b Author: Alan Garny Date: Fri Oct 7 18:00:20 2011 +1300 A first go at handling the change of modes/views. The interest here is with the simulation mode for which we are currently showing a calendar just to check the underlying infrastructure works as expected. commit 570e1a7d72462728af6ffdc2a95997b7d3cdabd9 Author: Alan Garny Date: Fri Oct 7 15:49:28 2011 +1300 Some minor improvement to the Central widget. commit baa6e91f39693518450ecb11cb3f44ec7fd9219a Author: Alan Garny Date: Fri Oct 7 15:34:47 2011 +1300 Some cleaning up as a result of our support only one view for the Simulation mode. commit 927c1921e20774bd3f78a0608aa2f6dcd8db1c37 Author: Alan Garny Date: Fri Oct 7 15:26:35 2011 +1300 Support only one view for the Simulation mode. commit 18767e54d3575f4f2b4745829d10a3647c78b5cc Author: Alan Garny Date: Fri Oct 7 13:22:27 2011 +1300 Minor refactoring of one of Qwt'\''s files which generated warnings on both Linux and Mac OS X (but not Windows). commit 2847765e59c4fe11025d60fbe64817c790ad4643 Author: Alan Garny Date: Fri Oct 7 13:12:31 2011 +1300 Output the results of a CellML simulation in a temporary .CSV file. commit 6b04138e31b1a62829582578804e16a64a5b71b1 Author: Alan Garny Date: Fri Oct 7 10:29:34 2011 +1300 Was delaying things unnecessarily in our CellML test. commit cb22bfaa04669ba9587f74b1e221a4890a50db4c Author: Alan Garny Date: Thu Oct 6 19:23:28 2011 +1300 Improved a few things with regards to the use of palettes. commit b8bc55414aeae6ca9bdea2a392777a9d57759b40 Author: Alan Garny Date: Thu Oct 6 18:12:42 2011 +1300 Get the Qwt library to properly build. Updated the developer documentation. commit bba21b3654cc46224d2faf3ef5cd9e9d478ff004 Author: Alan Garny Date: Thu Oct 6 16:04:50 2011 +1300 Had forgotten to update the CoreSimulation plugin'\''s Qt dependencies for Mac OS X deployment. commit 26b0bba1746b58456a1fe4065c924a597ce5ec75 Author: Alan Garny Date: Thu Oct 6 14:14:18 2011 +1300 Added the Qwt library as a plugin. Also created a dependence for the CoreSimulation plugin the new Qwt plugin. commit 1dd26a8d4bd4c190815b0872c3f2d22e0b66b0d0 Author: Alan Garny Date: Thu Oct 6 12:34:55 2011 +1300 Minor refactoring of some CMake files. commit 4eeac630b48b52c56a99a22442f40d611e198d07 Author: Alan Garny Date: Wed Oct 5 17:37:12 2011 +1300 Got some code to run a CellML file. However, though it all works fine, it looks rather cumbersome to me. commit 410969d7223ec9811141169ebad3330f51969b9f Author: Alan Garny Date: Wed Oct 5 17:35:46 2011 +1300 Slight improvement to the CellML Model Repository plugin (use a better regular expression engine and don'\''t have things case-sensitive). commit b9792671cefbfe2f38bc20b02bfa4da9201f4a4e Author: Alan Garny Date: Wed Oct 5 09:31:20 2011 +1300 Slight update to the developer documentation (added a reference to the CellML API 1.10). commit efdf0120ee209c76634e7596a33b23b5e524870c Author: Alan Garny Date: Tue Oct 4 17:05:59 2011 +1300 Modified the CellML test so that it now uses a more C++ like syntax. Note, however, that using the current approach, one should call release_ref() for objects (e.g. for the CelML bootsprap) and free() for strings (e.g. for CellMLComponent::name()), but we don'\''t here since it would make the code somewhat crazy again. This means that the current code badly leaks memory, but... we don'\''t care for now. We just want to check that we can do what we want with the CellML API. Later on, we will have to write a C++ wrapper to the CellML API which offers a C++ like syntax to the CellML API and handles those release_ref() and free() for us. commit 7f36f35816a64024d4bc5a6cf1777f834c257260 Author: Alan Garny Date: Tue Oct 4 14:20:17 2011 +1300 Updated the two CellML files that we ship with OpenCOR so that they now contain some metadata. commit 0b4ca6b9daeddd2e34881ed6c092831391371680 Author: Alan Garny Date: Tue Oct 4 13:33:31 2011 +1300 Some more retrieving of information from a CellML model. commit 36890239c86ca3df5fdfe03c9072707ff2e3197b Author: Alan Garny Date: Tue Oct 4 13:01:27 2011 +1300 Doing our CellML testing using the Hodgkin-Huxley 1952 model. Retrieving the name of the model, as well as the name of its components and components'\'' variables. commit d6a9528ab4ff31d08e2a406033634ddfe8833ec4 Author: Alan Garny Date: Tue Oct 4 12:06:35 2011 +1300 Updated the link to the JSON list of CellML models, so that it now points to the live repository. commit d244156c454ad7c808abe4908e5991ca8cf0be5c Author: Alan Garny Date: Tue Oct 4 09:21:57 2011 +1300 Fixed a silly overlook in the CellML Model Repository plugin (was trying to give the focus to a disabled widget!). commit f792b32084bcfd2299c91d2a93a451f2b24ca679 Author: Alan Garny Date: Mon Oct 3 19:06:20 2011 +1300 Oops, a file got overlooked by TortoiseGit...?! commit fd8c888493988a36f35fa4273816fa3f6d685e0c Author: Alan Garny Date: Mon Oct 3 19:03:53 2011 +1300 Use only one copy of the CellML header files (rather than distinguishing between Windows, Linux x86, Linux x64 and Mac OS X), since they are all the same. Removed cda_config.h though, since it'\''s not useful for using the CellML API. commit 6ba6f1d692a81cc058cd63cff61645c7334eb821 Author: Alan Garny Date: Mon Oct 3 18:32:09 2011 +1300 Work on the CellML test. commit bb099c74ddf932b591b0a3cfdfeb871f4b64076f Author: Alan Garny Date: Mon Oct 3 17:48:52 2011 +1300 Minor refactoring. commit 4961e5dd570a874f8ed544280c066fd19072c1a6 Author: Alan Garny Date: Mon Oct 3 17:21:37 2011 +1300 Going back to hard-coding some CellML test, since the GUI is not yet ready for what we want to do which is to test/use the CellML API to run a CellML model. commit 4a8b5fe53f34f34ec308f81c8189e1d00022a57c Author: Alan Garny Date: Mon Oct 3 17:00:22 2011 +1300 For commit e59a00383951d7fded382e0ae57e47713bef40b9 to be fully effective, we also need to copy some libraries to ${CMAKE_BINARY_DIR}. commit fa836d78f9baf27817aede45ca6ace996d9a06b1 Author: Alan Garny Date: Mon Oct 3 15:58:54 2011 +1300 Minor cleaning up of the CellML plugin. commit 08b6c6524c68c8e3970e22f9bf4fa391b7e6cd6f Author: Alan Garny Date: Mon Oct 3 13:38:03 2011 +1300 Added a new raw view for the editing of files using a text editor. commit a935bbe0ddbcacb5fe77ae5377a7cbdae1b0536a Author: Alan Garny Date: Mon Oct 3 12:41:10 2011 +1300 Got our various current actions to be properly enabled/disabled. commit e6251cd9c6b86fa083e6dbeccae0e1c53f3ec3bd Author: Alan Garny Date: Mon Oct 3 12:25:21 2011 +1300 Updating the actions after retranslating OpenCOR doesn'\''t seem required anymore. It could be that it was a know issue and that it got fixed in a recent version of Qt. commit 990b46b9c641868f101abee1b78834179003f8bf Author: Alan Garny Date: Mon Oct 3 11:22:43 2011 +1300 Connected mFileCloseAction and mFileCloseAllAction in the Core plugin. commit 3d3bfb453bb08d68e37cfd9a580fd29bd2c3f595 Author: Alan Garny Date: Mon Oct 3 08:46:40 2011 +1300 Improved the CellML Model Repository plugin, even though it would only be noticeable if we were not to disable/enable the GUI. commit 988be84f7e164828a429f89337647c72b08738a7 Author: Alan Garny Date: Sun Oct 2 12:51:04 2011 +1300 Make use of a regular expression to filter the list of CellML Models in the CellML Model Repository plugin. commit c6db0fe7925f2892bf59b2ba0c4c653819829dfb Author: Alan Garny Date: Sat Oct 1 18:01:57 2011 +1300 Slight improvement to the CellML Model Repository plugin (updated a tooltip and status tip). commit 6df1460a3555af3647ce67331675cd44f3a27ea5 Author: Alan Garny Date: Sat Oct 1 15:11:03 2011 +1300 Fixed a small issue with the CellML Model Repository plugin: its GUI was being re-enabled in the wrong place. commit 42c1d658acbbbfce53a83447d37a3297cdefbad5 Author: Alan Garny Date: Sat Oct 1 14:50:50 2011 +1300 Make sure that the icon of the reload button in the CellML Model Repository plugin is 16x16 in size (was the case on Windows and Mac OS X, but not on Linux). commit 2579fe29c33ab4c95e9c100dc5c608ea183d8cf0 Author: Alan Garny Date: Sat Oct 1 14:35:28 2011 +1300 Improved the CellML Model Repository plugin by adding a Reload button to it. commit 128feb7918a7285a00ab6dc162aa15e706a41263 Author: Alan Garny Date: Fri Sep 30 16:34:45 2011 +1300 Some cleaning up. Added a File|New menu with CellML 1.0/1.1 menu items that get added as part of the CoreCellMLEditing plugin. commit 376cbcac6541359bdbec97e4fb55e36eb68a65e5 Author: Alan Garny Date: Fri Sep 30 14:18:00 2011 +1300 Revised the Core interface by adding a setup method to allow plugins to set themselves up knkowing what other plugins are about. Incidentally, this fixed a pending, though unknown, problem whereby we were trying to setup a plugin while we didn'\''t yet know what the other plugins were about (check CorePlugin::initialize). As a result of the above, the File Browser and File Organiser plugins now work fully. commit df2131ab81d7eee4e53d44120e6ea55ee83ad45f Author: Alan Garny Date: Fri Sep 30 11:19:57 2011 +1300 Minor refactoring for the Viewer widget. commit 016a7441011a4e09b81a08e8974c2474514092db Author: Alan Garny Date: Fri Sep 30 10:58:33 2011 +1300 Minor refactoring. commit 3627a90d587008e3f291f2fb9f3b1033da13b459 Author: Alan Garny Date: Fri Sep 30 10:37:58 2011 +1300 Some minor improvements to the CellML Model Repository plugin. commit 86233daa564388f3df4aa5ed3e9e2b7da9bc10ce Author: Alan Garny Date: Fri Sep 30 09:44:38 2011 +1300 Slight improvement to the Help plugin when it comes to retranslating it. commit 19e6d549cd6eae175611be83e446cc4b3d7959df Author: Alan Garny Date: Fri Sep 30 08:40:27 2011 +1300 Minor update to the developer documentation as a result of the release of Qt Creator 2.3.1. commit d0e182286608f9084e147a5a811e090b289c88fe Author: Alan Garny Date: Thu Sep 29 20:27:02 2011 +1300 Slight overlook... commit f636538b61b140e3427afb64c75bff1c84415e48 Author: Alan Garny Date: Thu Sep 29 20:25:47 2011 +1300 Got rid of the InternetFile class which was being used to synchronously retrieve our list of CellML models in a JSON format. Indeed, that was too blocking (what a surprise!). Anyway, now done with the CellML Model Repository plugin. For now, at least, i.e. while '\''proper'\'' Web Services to PMR2 become available... commit 9885d8694e220950bcb8a64bf10ef40219ed293c Author: Alan Garny Date: Thu Sep 29 20:00:58 2011 +1300 Minor improvement to the Help widget when it comes to changing the locale. Now generate a list of CellML models which gets updated on the fly based on the user'\''s search criteria. commit d97d47f80674011166f4b04c0bf4eaf795a5b1b4 Author: Alan Garny Date: Thu Sep 29 18:33:26 2011 +1300 Some more work on the CellML Model Repository plugin. Also fixed/improved a couple of things with regards to translations. commit 061654e9296beafd87d7eddacd60942f4bf7f920 Author: Alan Garny Date: Thu Sep 29 17:25:16 2011 +1300 Re-added the CellML Model Repository widget since we want to demonstrate the search of of models using PMR2'\''s Web service. Can now read JSON code. commit f16d5541ad53b63efe413b6249252363171a1217 Author: Alan Garny Date: Thu Sep 29 15:15:14 2011 +1300 Slight update to the developer documentation. commit 4e64b14ea1ec59a67e26a4c5314ae4b0d37786ec Author: Alan Garny Date: Thu Sep 29 14:52:17 2011 +1300 Very minor fix (was getting a warning on Linux and Mac OS X). commit 6644a129b60fb4fa6e769fdf7078dceea49502d9 Author: Alan Garny Date: Thu Sep 29 14:22:28 2011 +1300 Can now synchronously retrieve a file off the Internet. We could have done that asynchronously natively, but the GUI would have to let the user know that something is happening and couldn'\''t be bothered to do it for now. So, instead we just '\''block'\'' until we the file. Anyway, used the above to retrieve the automatically generated JSON file off http://50.18.64.32/workspace/rest/contents.json. commit 3e7b05804862c972ed93410fbba4086f1b362529 Author: Alan Garny Date: Thu Sep 29 10:46:48 2011 +1300 Removed the CellML Model Repository widget since it was here just to demonstrate a web connection and nothing more. commit 5d6841c2aec19167d6d0d8907fc452e0b6106d01 Author: Alan Garny Date: Thu Sep 29 10:24:46 2011 +1300 Slight update to the File Organiser plugin. commit dc312f083475718ca900d840d8ad144d083c382b Author: Alan Garny Date: Thu Sep 29 10:05:57 2011 +1300 Minor editing of comments. commit 9a914106dd0de4293a459480622f0c35c90d62a2 Author: Alan Garny Date: Wed Sep 28 18:06:13 2011 +1300 I thought I was done with the loading of plugins, but clearly not. Now, with our new QJson plugin, something wasn'\''t working on Windows. Had I not reverted some code at some point (see commit e1b91e5e728bf5207ddc5c993f7b7bec863598bd and then commit f2393841eec04a6146e4df12212fa5b48cee0920, commit 289e75c49ba9bb7e1845a29b7ed59b15a6f34733 and commit 54e27a4497d9678d26d4a65257c5a350a999d761), it would have worked, but... Anyway, now, everything'\''s fine on all three platforms... with our current set of plugins... commit dcb783f110dbf66b0a630d83f53110ddc91c821f Author: Alan Garny Date: Wed Sep 28 17:39:25 2011 +1300 ... and a few more files that TortoiseGit didn'\''t pick up in the first place! commit a8a9af417be1ad8b7de72be00f1288c54f4c77c9 Author: Alan Garny Date: Wed Sep 28 17:38:13 2011 +1300 Created a new plugin so we can use QJson 0.7.1, thus providing OpenCOR with JSON support (at least required by our CellML Model Repository plugin). commit 46d0c5b7fff9f2216490b6b812bd4d256499b95e Author: Alan Garny Date: Wed Sep 28 13:55:40 2011 +1300 Minor 3rd party related updates. commit 41dfe2fcf978365009e8dfc2aeb3fec20ed906fb Author: Alan Garny Date: Wed Sep 28 13:18:37 2011 +1300 Even though the Core and Help plugins are not special cases anymore, there are still a couple of things that we want to be done only by them. commit eb0fd057d4f1441b6764278234f7f7047a8af699 Author: Alan Garny Date: Wed Sep 28 13:05:21 2011 +1300 The Core plugin is not considered as a special case anymore. commit dce398fa0b05dd046cbff6e71f1de3a0e24a2c06 Author: Alan Garny Date: Wed Sep 28 12:15:20 2011 +1300 Fixed a small issue related to the sorting of menu item titles that contains accentuated characters. commit cc4655521e9e99d72d1f7cd9cbf1bbac5419bd5b Author: Alan Garny Date: Wed Sep 28 09:46:24 2011 +1300 The Viewer plugin is now visible within OpenCOR. Updated the treatment of the View menu as a result. commit 21b7bf630cc340afa658598db2dd88bcf486009a Author: Alan Garny Date: Tue Sep 27 14:28:32 2011 +1300 The Help plugin is not considered as a special case anymore. Also, as a result, now have a menu item for our various Organisation windows. Some cleaning up. commit e421e855e2f2262981349d4e8edcd11d9bd6c57f Author: Alan Garny Date: Tue Sep 27 10:32:39 2011 +1300 Working towards not making the Core and Help plugins a special case. commit 1d315ffd4a9555790111a64983e519ff1b3edba7 Author: Alan Garny Date: Tue Sep 27 10:19:29 2011 +1300 The CellML Model Repository, File Browser and File Organiser plugins now have their respective window up and running. Revised the GUI interface in the process (no need for addWindow). Otherwise, there is currently no communication between those plugins'\'' window and OpenCOR itself. Will need an interface for communication to occur. Also, will need to add a View|Organisation menu to show/hide those plugins'\'' window. commit ee5d16dcabb416ab7134af25c9d1ca284e715502 Author: Alan Garny Date: Mon Sep 26 19:10:05 2011 +1300 Renamed the API interface to File interface, since it had nothing to do with an API while everything to do with file support. commit dee365fe530d9e9d48a8e5cd9b9abd1341db71e1 Author: Alan Garny Date: Mon Sep 26 19:04:23 2011 +1300 Slightly reworked the GUI and API interfaces, so that a plugin can implement both if needed. commit e487caad75accaa612150e69d571f841932390df Author: Alan Garny Date: Mon Sep 26 18:56:40 2011 +1300 Made the GUI interface independent of the core interface, i.e. the way it should have been in the first place. commit fe9eadc60fa1c0e0afd36a8934b485151c7aed6e Author: Alan Garny Date: Mon Sep 26 17:52:47 2011 +1300 Made the API interface independent from the core interface. commit f0dea57a1f4dee92db93a23a2073d26567191cbd Author: Alan Garny Date: Mon Sep 26 17:36:30 2011 +1300 Some cleaning up in the interface(s) implemented by our various plugins. Minor refactoring too. commit 3db2298bc360e5cd283176455c2643c370cd151a Author: Alan Garny Date: Mon Sep 26 17:01:10 2011 +1300 Minor cleaning up of cmake/common.cmake. Created a new interface for internationalisation (as part of an effort to modularise our plugin interfaces, as opposed to having them inheriting from the core interface, as well as ensuring that non only GUI plugins may support internationalisation). Some refactoring of of the core and GUI interfaces. Improved the CellML plugin by not having '\''hard-coded'\'' translations for the CellML file type description (indeed, there was really no need to do it the way it was originally done!). commit 2f7d51d9456f8fa759a62e54d410c9a50e7156be Author: Alan Garny Date: Mon Sep 26 12:58:14 2011 +1300 Moved the PluginInfo class to src/plugins/plugininfo.cpp/h from src/plugins/coreinterface.cpp/h. commit c549e93c3fd62bc1dd6dce09655471ffa519d52d Author: Alan Garny Date: Mon Sep 26 08:47:09 2011 +1300 Minor refactoring. commit 03e4897d422a573d4ca3f50abf1956fd310fa6fc Author: Alan Garny Date: Sun Sep 25 20:27:59 2011 +1300 Some straightforward refactoring: move Version from CoreInterface to PluginInfo. Also renamed InterfaceVersion to Version. commit fbcd377cf4a283ef4cfff06f7615cc0abaf9eb1c Author: Alan Garny Date: Sat Sep 24 15:13:02 2011 +1200 Renamed PluginInterface to CoreInterface. Also updated the plugins side of the developer documentation. Some minor cleaning up. commit 6c0538d575129379988718027ff064094550b51e Author: Alan Garny Date: Fri Sep 23 19:53:47 2011 +1200 Reorder the menu items from the View|Toolbars menu, thus making the contents of that menu look '\''better'\''. commit 6c4e6cd1bf8d5954ff28026f5f2456c4132fb358 Author: Alan Garny Date: Fri Sep 23 19:17:35 2011 +1200 Done with the merger of menus/toolbars created by plugins, should they have the same name. commit 2aef82252e78764db788868597602edaff24cd11 Author: Alan Garny Date: Fri Sep 23 16:32:17 2011 +1200 Working towards the merger of menus/toolbars created by plugins, should they have the same name. commit cb96aed177aaca4ca34a4ba94b34c892f8b154f2 Author: Alan Garny Date: Fri Sep 23 16:14:44 2011 +1200 To check whether a given toolbar/menu has already been created by another plugin can'\''t work the way it was done using GuiInterface::toolbars and GuiInterface::menus, since these were static to the CURRENT plugin (as opposed to ALL the plugins). This is kind of obvious when you think of it, but well... Anyway, now, we just create the menu or toolbar, and it will be up to the main window to reconcile things (i.e. merge the contents of two toolbars/menus), if needed. commit 2e42802f79db20170c3e0cb082ec7f61a3ca8740 Author: Alan Garny Date: Fri Sep 23 15:59:39 2011 +1200 What made the Edit toolbar not show/hide was the fact that its menu action was not checkable! commit 1c278e94263b21fb9a5129e6f3132f1eadcbe3d6 Author: Alan Garny Date: Fri Sep 23 15:36:04 2011 +1200 Minor refactoring. commit 9bc1b089f10c93a3c2547b22c8eba5f0d0bb2643 Author: Alan Garny Date: Fri Sep 23 15:02:09 2011 +1200 Change the size of the icons in the toolbars created by a plugin. commit 4bd974a29abe8cb2836ac7a2b09f0c781ba988f0 Author: Alan Garny Date: Fri Sep 23 14:50:27 2011 +1200 Now have a menu item added to the View|Toolbars to control the visibility of a toolbar that has been added by a plugin. Note that for some weird reason, it doesn'\''t work for the Edit toolbar...!? Fixed a few icon issues with the File menu. commit 3b9944fde2a286aefe41d1178933bb7bc93e89e8 Author: Alan Garny Date: Fri Sep 23 11:48:38 2011 +1200 Done with being able to add a toolbar from a plugin and made use of it for the CoreEditing plugin. commit f8bd5055e0d842a3b4186a3cdfe68039714406ee Author: Alan Garny Date: Fri Sep 23 10:03:47 2011 +1200 Support for one application toolbar of a given name across the plugins. commit 49a0aafbefd306326ca0180c9426efda972dec99 Author: Alan Garny Date: Fri Sep 23 09:51:53 2011 +1200 Support for one application menu of a given name across the plugins. commit 707c3c7eb86b01f862f9c80ef81510747a0f888b Author: Alan Garny Date: Fri Sep 23 09:27:42 2011 +1200 Oops, we want QToolBar toolbars, not DockToolBar. commit 6b1acde59bd4001e0f53e62d8d3e00bf0d896662 Author: Alan Garny Date: Fri Sep 23 09:14:48 2011 +1200 Started work on supporting toolbars in plugins. commit 15450777046191e706527d8063d604f60270e1fb Author: Alan Garny Date: Thu Sep 22 19:55:12 2011 +1200 Fixed an issue with our use of CMake when it comes to copying the CellML binaries to our bin folder. When building in parallel, then it could happen that the bin directory might not have been created when trying to copy the CellML binaries, thus messing things up in the end. Now, it'\''s all fine, no matter whether we build in parallel or not. commit 72ae123e57ac9bd9362eaee6d1b3b8a0563669a4 Author: Alan Garny Date: Thu Sep 22 18:56:20 2011 +1200 Minor fix to the winConsole CMakeLists.txt file. commit 25ff78b774780b7a4c6c1f12ceaa6a88f08cd3cc Author: Alan Garny Date: Thu Sep 22 17:54:05 2011 +1200 The refactoring I was talking about in the last commit. commit c8df0fbb55e0aa9ea73e2d9058cbe4430dd88d1d Author: Alan Garny Date: Thu Sep 22 17:03:39 2011 +1200 Donne with opening any file, including those that are supported. Need to do a bit of refactoring though. commit 76959d21f033f316fd20fc306559988837a27c77 Author: Alan Garny Date: Thu Sep 22 16:33:07 2011 +1200 Improved the way settings are loaded/saved. Some cleaning up. commit 2c9b15ab1cd663688ac29ae29cd57f549087348f Author: Alan Garny Date: Thu Sep 22 15:26:22 2011 +1200 Some refactoring to have the loading/saving of GUI plugin'\''s settings done within the GUI interface rather than in the main window as it used to be the case (why on earth did I do it that way the first time round?!). commit 9d5ad6896c576f09f8583f6f252dde568c904a95 Author: Alan Garny Date: Thu Sep 22 14:44:48 2011 +1200 Minor refactoring. commit 7c5c6434ce2da8e54e86f5eb8ff1b98289be07fd Author: Alan Garny Date: Thu Sep 22 14:04:49 2011 +1200 Some minor refactoring to make it easier to use certain parameters from a plugin. commit 589d37145eaf76dfdd8fb725e2a0f729e39aec95 Author: Alan Garny Date: Thu Sep 22 13:12:21 2011 +1200 Minor refactoring. Started work towards the opening of a file. commit 4ce20378306acbfac2d47bb4edc686e69cd5ff48 Author: Alan Garny Date: Thu Sep 22 09:35:11 2011 +1200 Removed the Core plugin dependency from the CellML plugin (since we don'\''t have our small CellML test, which needed access to Core::saveResourceAs, in the CellML plugin anymore). commit 2acee7f18cf233cfb38411fd6c9add7ff550f8e9 Author: Alan Garny Date: Thu Sep 22 09:29:32 2011 +1200 Minor update to the documentation. commit 33f32107c7490f08eed0a71f3bf888363e1da57f Author: Alan Garny Date: Thu Sep 22 09:10:09 2011 +1200 Reverted commit 289e75c49ba9bb7e1845a29b7ed59b15a6f34733 (about the loading of plugins on Linux) and came up with a '\''proper'\'' solution, i.e. not one that is '\''black magic'\''! commit 920b884ee9ffb7dfdf70318539a680c60d49dff5 Author: Alan Garny Date: Wed Sep 21 17:10:49 2011 +1200 Created an API interface. The fileTypes method is now part of it rather than part of the default plugin interface. Some minor cleaning up. commit b8534091c06973e74073d8f8967432b3f64f3fb7 Author: Alan Garny Date: Wed Sep 21 16:30:33 2011 +1200 Minor refactoring. commit 726cd56fa03944b63d5af7ed3e65ce1014a990fa Author: Alan Garny Date: Wed Sep 21 16:11:06 2011 +1200 Minor refactoring. Also, support file types through plugins. E.g. the CellML plugin adds support for a CellML file type. This means that whenever we want to open a file, it will be possible to open a CellML file. commit da8e2626b6cebcc7b819153c81b47730d2ed1b07 Author: Alan Garny Date: Wed Sep 21 14:36:09 2011 +1200 Now that the CellML binaries work fine on all three platforms, we can remove our small CellML test. commit d48b5bb3cf0129ac1b327edcbf1c6cd01371aa1e Author: Alan Garny Date: Wed Sep 21 14:04:06 2011 +1200 Been getting confused with the loading of plugins on Linux, but I think I have finally nailed it even though it still doesn'\''t fully make sense to me! commit 3082d4910418500a6a0ff497671d34db4f2d4918 Author: Alan Garny Date: Wed Sep 21 11:21:06 2011 +1200 Fixed the issue of testing plugins on Linux. commit 445a1ea9a85a24b085131dcfee9c9c6a365c58c1 Author: Alan Garny Date: Tue Sep 20 19:14:46 2011 +1200 Rearranged a few files. commit 162af6135243b72e3d3571ab7c0da262b1bb32f2 Author: Alan Garny Date: Tue Sep 20 19:03:42 2011 +1200 Cleaned up our main CMakeLists.txt. Also got the CellML binaries to work on Windows (i.e. our missing platform), even though it does require an extra DLL. commit a203a37268d7546226e7b967201c31665962301a Author: Alan Garny Date: Tue Sep 20 18:20:13 2011 +1200 Wasn'\''t deploying the CellML binaries in the right place on Windows. commit e3a18fdaff7bc35f307c1084d4214e9d25ce55d3 Author: Alan Garny Date: Tue Sep 20 14:31:09 2011 +1200 Aesthetic update. commit c97a07da046bc5949a241ad2a3b2baf286b69203 Author: Alan Garny Date: Tue Sep 20 13:27:01 2011 +1200 Minor refactoring of CMake files. commit 55fea4cd28c8fd6072b8b8a569e88f63d5f5905e Author: Alan Garny Date: Mon Sep 19 22:42:13 2011 +0200 Fixed a minor issue of text encoding with src/plugins/api/CellML/CMakeLists.txt. commit b8866b0723888a399fff5b7fcbdb44d73578b91c Author: Alan Garny Date: Sat Sep 17 22:05:01 2011 +0200 Done with deploying the CellML binaries on Mac OS X and it all works! Man, I should work from an airport more often! :) commit 9c6c4f981c0136843b72273443a1375fb2b2ed8f Author: Alan Garny Date: Sat Sep 17 21:32:00 2011 +0200 Working towards the deployment of the CellML binaries on Mac OS X. commit 0feef23862f6b01eeac54e8d4e3502d8b9b6e4c3 Author: Alan Garny Date: Sat Sep 17 21:12:46 2011 +0200 Some more cleaning up for the Mac OS X deployment. commit 78d026b5fc56aa32f6eac28b83f6bbdb5aa18cea Author: Alan Garny Date: Sat Sep 17 20:54:39 2011 +0200 Some cleaning up regarding deployment on Mac OS X. commit eafabaa0985562a6e9e504597a17f7215bc9a31f Author: Alan Garny Date: Sat Sep 17 00:43:53 2011 +0200 Removed the CellML binaries from the CellML plugin'\''s resource (it was done for Linux x86, but not Windows x86, Linux x64 and Mac OS X x64). commit dc2b9f73f624c1b72943ba6f78265d27e3c3c6a2 Author: Alan Garny Date: Sat Sep 17 00:35:21 2011 +0200 Refactored the CMake code so that we can now deploy the CellML binaries on Mac OS X. commit a85f4e567bb056ce278ceec0206a116059bb25c9 Author: Alan Garny Date: Fri Sep 16 21:58:32 2011 +0100 Ok, it seems like my wish to have the CellML binaries as a resource to the CellML plugin can'\''t work (when running a deployed version of OpenCOR). So, instead, we must deploy the CellML binaries in the same way that we deploy the Qt libraries. Oh well... commit cd5986bc662dff66b0e443c8fec67df08b395a2e Author: Alan Garny Date: Fri Sep 16 19:06:05 2011 +0100 Minor refactoring of distrib/application.sh.linux.in. commit bb5d205b55763286c884a653914f581454464deb Author: Alan Garny Date: Fri Sep 16 18:05:57 2011 +0100 Forgot to update the CellML plugin info function to account for the fact that the CellML plugin requires the Core plugin. commit 1a2d14ece4a957b3ffa65d6747035f2ceebb9ed1 Author: Alan Garny Date: Fri Sep 16 16:05:34 2011 +0200 Minor refactoring of our cmake/common.cmake file. commit 2fec08b2a5784f2f58092ad4248ae02390fe66c7 Author: Alan Garny Date: Fri Sep 16 15:21:08 2011 +0200 Minor refactoring of our main CMakeLists.txt file. commit cd459cf73425215e32b36499a541f6a8d17cb6c8 Author: Alan Garny Date: Fri Sep 16 14:18:41 2011 +0100 Oops, I had slightly messed things up by adding the phonon library to the Linux deployment process. commit 1d77d596a615908db7a5ef4a70f8e4e3c59d8772 Author: Alan Garny Date: Fri Sep 16 11:11:36 2011 +0100 Added the phonon library to the Linux distribution since it'\''s required (according to ldd). commit 0f946a8583b68b5e98c44ed4ee90b76969a5966c Author: Alan Garny Date: Thu Sep 15 20:51:42 2011 +0100 Use a local test CellML file (for our testing of the CellML API) as opposed to using a CellML file which located on PMR2 (thus making testing unnecessarily slow). commit 7e20c8995c17f731bd4b39ea5aea5856d2c8bde5 Author: Alan Garny Date: Thu Sep 15 10:40:03 2011 +0100 Minor refactoring that got CellML to work on Linux (to start with / at least). commit 3d3d614b3fd886e7dd6e48c8e4989dbf807b8399 Merge: 6ee745776 f16753306 Author: Alan Garny Date: Wed Sep 14 22:47:04 2011 +0200 Merge branch '\''master'\'' of github.com:opencor/opencor commit 6ee745776d1c52dc7657d809642ea19a6e0e57a0 Author: Alan Garny Date: Wed Sep 14 22:46:03 2011 +0200 Addressed the small problem of building OpenCOR on Mac OS X using Qt Creator. commit f16753306860b800f49623cbdce6b007f3cd01c7 Author: Alan Garny Date: Tue Sep 13 22:05:33 2011 +0100 Oops, didn'\''t properly updated the CellML.qrc files. commit 4165149b13a288d84720f262b0873fded94f4ff1 Author: Alan Garny Date: Tue Sep 13 21:57:56 2011 +0100 Now extract and load the CellML libraries upon loading the CellML plugin (and unload everything on unloading the plugin). Yet, the CellML library still doesn'\''t work... Need to figure out why... Slightly refactored the help window with regards to extracting the help files. commit 84f8685d309b844694c75df35fb84089bdca8c7f Author: Alan Garny Date: Tue Sep 13 17:50:27 2011 +0100 Working towards making use of the CellML binaries within OpenCOR. Right now, everything builds fine (at least, on Linux x86), but won'\''t work as such since the binaries need to be unzipped (from the CellML resource) and loaded. commit fd0108f2acf591a5b1bf9bf6bdb5d0d1ffd98068 Author: Alan Garny Date: Mon Sep 12 00:42:02 2011 +0200 Hmm, ok, to use @rpath on Mac OS X (for an OpenCOR plugin'\''s dependencies on one or several other OpenCOR plugins) seems to require a bit more work which is not documented at http://doc.qt.nokia.com/latest/deployment-mac.html, so… reverting to @executable_path commit cf63468cb4ebbd393501f3b185a540d957289207 Author: Alan Garny Date: Sun Sep 11 23:33:45 2011 +0200 Very minor update to the Mac OS X deployment (note: it doesn'\''t make any difference whatsoever, but at least it'\''s consistent with what has been done elsewhere). commit 1c20fd4de56c60ec5f3634f92b77b13f25b17021 Author: Alan Garny Date: Mon Sep 5 20:32:22 2011 +0200 Slight update to the developer documentation. commit b2e13d44176e527095cdabd604da3337654040ed Author: Alan Garny Date: Sat Sep 3 17:26:32 2011 +0100 Oops, forgot to update the name of a manually deployed library. commit f5a02b7ee94c72288b54448b7b9f93e16677b650 Author: Alan Garny Date: Sat Sep 3 16:56:28 2011 +0100 Slight improvement to the Mac OS X deployment of our plugins (as a result of trying to mimic what is done in Qt Creator). commit 4829222e78dedba14a1b3f3f1fc5856cc0987281 Author: Alan Garny Date: Sat Sep 3 16:50:53 2011 +0100 Some fixes related to Mac OS X deployment. Still not able to get the Help plugin to work again...!? commit b08f2e62d3c1dfb278e2f46f37630a9a6dee2519 Author: Alan Garny Date: Sat Sep 3 15:42:57 2011 +0100 For Mac OS X, added the QtXml framework to the bundle, since it'\''s required by the QtMmlWidget plugin and is therefore not automatically deployed by macdeployqt. Also fixed the issue of the plugins not being properly deployed by macdeployqt. commit cfee6b78995f63c01529b293c784eb95c28caf2d Author: Alan Garny Date: Fri Sep 2 12:33:41 2011 +0100 Now require the version of Qt that we are actually (i.e. 4.7.4 at the moment). People can always use a different version if they want (see the Pre-requirements documentation), but then to their own risk. Updated the documentation to account for the fact that we are not using Qt 4.7.3 and Qt Creator 2.2.1 as individual packages, but Qt 4.7.4 and Qt Creator 2.3 as part of Qt SDK 1.1.3. Note that there is still something that needs to be done with regards to deploying on Mac OS X, but this will have to wait a bit since I really ought to get going with my move back to France... commit 6cc402271650ce20237d68a291e8777fea71fabd Author: Alan Garny Date: Fri Sep 2 00:25:24 2011 +0100 Added another Mac OS X peculiarity (Cmd+H) even though the automatic application menus (i.e. Hide, Hide Others, Show All) don'\''t enable/disable as they should (Qt issue?). commit d87e785c88d05d6f579dcd34e47a51c5906a48ce Author: Alan Garny Date: Fri Sep 2 00:09:59 2011 +0100 Fixed a few Mac OS X deployment issues as a result of switching to Qt SDK 1.1.3 (i.e. Qt 4.7.4 and Qt Creator 2.3). commit b674c65a3147c9ec2bdb3e389c7ec5d9209327ef Merge: d1c092b79 154ccd206 Author: Alan Garny Date: Thu Sep 1 17:19:42 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit d1c092b7981f7011ddbbf5fc70ce2085650fe116 Author: Alan Garny Date: Thu Sep 1 17:18:57 2011 +0100 Slight improvements for the CMake build on Mac OS X. commit 154ccd206c074603e6a97c0c12afd5e8bc11a902 Author: Alan Garny Date: Wed Aug 31 19:48:09 2011 +0100 Removed an obsolete comment in the CMake file for the LibQxt library. commit 0175ff0023a35016b2e22486950f4ddffe7a3a6e Author: Alan Garny Date: Wed Aug 31 18:40:09 2011 +0100 Minor improvement to our common CMake file. commit 62e2a8d1e73b985ea86598c11b7576c7e1fdc016 Author: Alan Garny Date: Wed Aug 31 18:09:36 2011 +0100 Forgot to update the include directories for the CellML plugin. commit 4bad95df67274fa933b2c42aea048647a285e0c4 Author: Alan Garny Date: Wed Aug 31 14:30:07 2011 +0100 Minor improvement to our CellML plugin'\''s CMakeLists.txt file. commit dcddecf7e0df145eda1f35e266599b74def5d30b Author: Alan Garny Date: Wed Aug 31 14:26:34 2011 +0100 Oops, somehow managed to overlook a couple of files... commit 6ff2b2b53a783a9f3e951963ff6f148fa3ddf81b Author: Alan Garny Date: Wed Aug 31 14:24:16 2011 +0100 Our CellML plugin now has the CellML 1.10rc1 binaries as a ZIP resource. Not sure it can be used as such though. So, yes, some testing is required, but at least that'\''s how things would be done with regards to the CellML plugin, i.e. have the plugin file containing everything that is related to the CellML API rather than have several library files as is the case with the CellML API binaries. commit 0c7327a15624eda4075dd7e124500b7af7b4abbf Author: Alan Garny Date: Wed Aug 31 10:00:14 2011 +0100 Added the Mac OS X version of the CellML 1.10rc1 binaries. commit afdaf839953946825f5f8bea46f4e7560576903c Author: Alan Garny Date: Wed Aug 31 08:46:48 2011 +0100 Added the Linux 64-bit version of the CellML 1.10rc1 binaries. commit 311eb815f6acbadd920b99807d35e30a39450d7a Author: Alan Garny Date: Wed Aug 31 08:45:21 2011 +0100 Added the Linux 32-bit version of the CellML 1.10rc1 binaries. commit 5cc0fd037f207f39c624b42bf3f75a37625c7cce Author: Alan Garny Date: Wed Aug 31 08:30:29 2011 +0100 Added the Windows version of the CellML 1.10rc1 binaries. commit cf64e84e5781fbaac40f1027564a8b91ce37295d Author: Alan Garny Date: Tue Aug 16 17:35:27 2011 +0100 Minor refactoring. commit c6c0ea99229ac88b3bae2fa8d69ac1ab4d5261e6 Author: Alan Garny Date: Tue Aug 16 17:32:54 2011 +0100 Cleaning up of code. commit 0f0d6bb5987731b5b5b1487a7526d9ff33bfe8b2 Author: Alan Garny Date: Fri Aug 12 18:34:51 2011 +0100 Removed uses of prepend for QList variables. In the end, this was counter-intuitive, so... commit d0a5722c94ee9e335173f79bb91bc4c787380d3f Author: Alan Garny Date: Fri Aug 12 17:46:03 2011 +0100 Some refactoring of GuiInterface: addAction was replaced by addMenuAction, since we may also want to add an action to a toolbar (yet to be coded up). commit d85c79dc21badbeb1647916a8deeb93b51b125f0 Author: Alan Garny Date: Fri Aug 12 17:32:53 2011 +0100 Straightforward refactoring of the CentralWidget class. commit fb42451b3a66e2546f4124a126a1307790e9a833 Author: Alan Garny Date: Fri Aug 12 15:53:16 2011 +0100 Still working on a QTabBar+QStackedWidget solution. commit de1d66c2d5f22c1064d77f554c6d91ca840ccf34 Author: Alan Garny Date: Fri Aug 12 14:33:22 2011 +0100 Started work on not relying on TabWidget anymore, but on QTabBar for keeping track of the files that are opened and QStackedWidget to keep track of the different views associated to the different files. Note that (Q)TabWidget might sound like the obvious choice and it indeed would be if it was for the fact that a simulation view (and maybe an analysis view?) should be common to ALL the files unlike an editing view, so... commit 65b7624f0c77c080f5c5937bed91c4808528861c Author: Alan Garny Date: Fri Aug 12 13:09:14 2011 +0100 Some more minor refactoring. commit ad3fc3dc7438bbd5bef75f0398fc0c7835245d25 Author: Alan Garny Date: Fri Aug 12 13:07:02 2011 +0100 Some more minor refactoring. commit 49b9cc518f30599fe0c4dd352aae277761b87a4e Author: Alan Garny Date: Fri Aug 12 13:00:30 2011 +0100 Minor refactoring. commit 36977ab7e3750d66d97305261e4436b040345d76 Author: Alan Garny Date: Fri Aug 12 12:30:48 2011 +0100 Modified the rest of OpenCOR to account for the renaming of CellMLXMLView to RawCellMLView. commit c026ffc4ef9b83e161a7dda95de2e514432853c2 Author: Alan Garny Date: Fri Aug 12 12:21:36 2011 +0100 Renamed the CellMLXMLView folder to RawCellMLView since it'\''s more appropriate indeed. commit b9cb7b12740d34850c6cf4d69c5d0f31cb6524fb Author: Alan Garny Date: Fri Aug 12 12:17:43 2011 +0100 Decided to re-add the tab bar for the simulation views. Indeed, we may have a view for CellML simulations, SBML simulations, both CellML and SBML simulations, etc. I initially thought we could have one simulation view which would be completely independent of the modelling format used, but then how do we get the model from the model file?! commit 2bf51052c67bf2679fa00a6b46c0507108470a49 Author: Alan Garny Date: Thu Aug 11 19:26:48 2011 +0100 Reworked some code after realising that, on Mac OS X, to change the language makes the mode tabs in the central widget to flash (since they used to be removed and re-added with the right translation). commit f9c9f8137ba02f86c93e6c2a70dafd1f28b249d7 Author: Alan Garny Date: Thu Aug 11 17:21:38 2011 +0100 Reworked some code, so we can now have the view tab bar names translated. commit 41f10802adf0cefade2095cd2c6e4c6d30b0f325 Author: Alan Garny Date: Thu Aug 11 12:04:22 2011 +0100 The simulation mode can have only one view, so we don'\''t a QTabBar for the simulation'\''s '\''views'\''. commit 8e1756250e54270d03ae59cde18d2b3426db572d Author: Alan Garny Date: Sat Aug 6 19:00:57 2011 +0100 Fixed a small issue of flickering of the central widget on Mac OS X (when changing modes and therefore updating the views), as well as fixed a small issue of showing/hiding the views the first time round. commit 82d226f5911b60aa97f7e8d8b908a1390e6383dc Author: Alan Garny Date: Sat Aug 6 16:52:38 2011 +0100 Minor fix to the last commit. commit 81a792a1ff4af9943951b0c7d12d6501b9a51716 Author: Alan Garny Date: Sat Aug 6 16:34:09 2011 +0100 Now have a QTabBar for each set of views (i.e. for the Editing, Simulation and Analysis modes) and show it, depending on whether the corresponding mode is active. Can also handle the selection of a new mode. commit c45e250f8773aba34c801b2b01ec0e0494089364 Author: Alan Garny Date: Fri Aug 5 18:27:25 2011 +0100 Further work on supporting views in the central widget. commit 07168dae7d11e4f9cbf1eb54b55e1ccadf071706 Author: Alan Garny Date: Fri Aug 5 15:23:49 2011 +0100 Working towards having views supported (in addition to the modes which is now working fine) in the central widget. commit 121fd07719d546ebfdf45930a838e95906b8834f Author: Alan Garny Date: Fri Aug 5 15:07:19 2011 +0100 Take advantage of our new GuiViewSettings class to enable a mode in the central widget. commit 01e74049f88cf4226d359e1c7a5835b1df93cbe6 Author: Alan Garny Date: Fri Aug 5 14:25:01 2011 +0100 Simple refactoring / cleaning up of code. Also added a new GuiViewSettings class so that we can allow plugins to declare a view for our main central widget. commit 701b3dc4377720691f4e6b9a245e05205d431acb Author: Alan Garny Date: Fri Aug 5 13:30:32 2011 +0100 The CellMLSimulation plugin now requires the Simulation mode to be active. commit 91805d8dbc98bf09d00a54d2b9d6304e3cb2f247 Author: Alan Garny Date: Fri Aug 5 11:12:57 2011 +0100 Only enable the File|Save based actions if the Editing mode is active. commit 47b9deec264b85825cfcc222c5517b7f79b25a35 Author: Alan Garny Date: Fri Aug 5 11:02:00 2011 +0100 Moved some resources from the CoreEditing plugin to the Core plugin. commit d4cd7bae867a3d92b77eb8f3fed58cf7ab3baf3e Author: Alan Garny Date: Fri Aug 5 10:51:31 2011 +0100 Working towards having the File actions back in the Core plugin. Indeed, since we want to be able to simulate a file without first having to '\''edit'\'' it. This means that we therefore need access to the File|Open, etc. actions. commit f0f3f743e28c3590be574a66bb77b56b07d43585 Author: Alan Garny Date: Fri Aug 5 10:32:47 2011 +0100 Minor editing of an action title. commit b4199ef52aab8b464e64627b329e9cfc419d6c0a Author: Alan Garny Date: Fri Aug 5 10:15:41 2011 +0100 There is no reason why we couldn'\''t simulate a CellML file without first having to '\''edit'\'' it, so... commit 6faf0293ba94e862b7e57849fde7d89a3171c9a1 Author: Alan Garny Date: Thu Aug 4 20:40:31 2011 +0100 Fixed an issue with the error status for non-loaded plugins. commit b16b278bafcf30104fd19ba15ad6e726c6352422 Author: Alan Garny Date: Thu Aug 4 20:03:03 2011 +0100 Some heavy refactoring and work on making it possible for the Core plugin to determine which plugin requires which (editing, simulation or analysis) mode, if any. Also some cleaning up here and there. commit 75a9ce4843bae28a1a8a4081e4d30abb7fe9001a Author: Alan Garny Date: Thu Aug 4 15:22:22 2011 +0100 Oops, we actually want to pass a list of the plugins that have been loaded, not all the plugins that are available! commit 39e9995877fc92607fc8181d20c3928df21d7b1b Author: Alan Garny Date: Thu Aug 4 15:17:39 2011 +0100 Pass a list of all of the plugins to the initialze method of any plugin interface. commit 45b1edf24fc8c69b2a274142af5091aa459ae3af Author: Alan Garny Date: Thu Aug 4 11:21:08 2011 +0100 The CellMLSimulation plugin should require the CoreCellMLEditing plugin, not the CellMLXMLView plugin. Indeed, the latter would be too restrictive (what if the user is not interested in the CellML XML View?!). So, instead, we should require the CoreCellMLEditing plugin. It would then be the CoreCellMLEditing plugin'\''s job to let us know whether there is at least one view available, meaning that the user would then be able to open a CellML file and therefore simulate it. commit 0ae232a482e2a2505396ed049ef5e5147353373a Author: Alan Garny Date: Wed Aug 3 17:40:12 2011 +0100 Simple refactoring to use foreach rather than iterators. commit 5a9ca6cd877ba82c08ef4fdf79f805daaaad5acc Author: Alan Garny Date: Wed Aug 3 15:11:31 2011 +0100 Only accept the dropping/opening of files in the central widget if at least one mode is available. commit 278644c0c3b3f377374544f0157898e497c344ce Author: Alan Garny Date: Wed Aug 3 15:03:08 2011 +0100 Allow to enable/disable the editing, simulation and analysis modes in the central widget. commit 28d9d0b674e3631ec5554e2bbbbfe5791caaf23e Author: Alan Garny Date: Wed Aug 3 09:29:34 2011 +0100 Updated the description for the Viewer plugin. commit b1bdb23df76d4e6b9e58fb086cd2f9ad2597f001 Author: Alan Garny Date: Tue Aug 2 18:57:13 2011 +0100 Moved actions/menu from the Core plugin to the CoreEditing plugin. Also updated some resources. commit 68f073c62b89c55072ec7fdcc8797e953b74604c Author: Alan Garny Date: Tue Aug 2 17:48:37 2011 +0100 Simple refactoring for our TreeView widget. commit 7e5c1dca6c6dd777a7f677cf810e048c0eeb1ea5 Author: Alan Garny Date: Tue Aug 2 17:15:18 2011 +0100 Refactoring of code with the view of moving some of the Core plugin menus/actions to the CoreEditing plugin. commit 2793759d285a24c696f1a802f58b0dcac9076408 Author: Alan Garny Date: Tue Aug 2 16:43:25 2011 +0100 Some overdue cleaning up. of the GUI plugin interface. commit de28bd119dcccfe5765b9f9653d58c294f2a64e3 Author: Alan Garny Date: Tue Aug 2 15:48:33 2011 +0100 Argh, I can'\''t be sure for certain what things are going to be like for the console side of OpenCOR when it comes to plugins. So, ok, let'\''s not think too much about it for now. The code is completely modular anyway, so when the issue of the console of side of OpenCOR arises, it should be relatively straightforward to refactor our code, if necessary. This also means that for the time being, we only focuse of the GUI side of things, hence some plugin updates... commit e156137e3141608f7a5b3bfe8633b6ec3ffccd93 Author: Alan Garny Date: Tue Aug 2 15:33:42 2011 +0100 Forgot to remove some OpenCOR dependencies on the CellML and CoreSimulation plugins. commit 56bd71de80438fc4de2cb986b1ca089673fa126c Author: Alan Garny Date: Tue Aug 2 14:41:02 2011 +0100 Updated the Core plugin. commit ceb2f70f8c212b11e1bb3a64053a4fcf8bbf22e2 Author: Alan Garny Date: Tue Aug 2 14:38:44 2011 +0100 Updated the core simulation plugin. commit 2b3aed30fd20ad77f3b08d228b72377c2df920d4 Author: Alan Garny Date: Tue Aug 2 14:31:28 2011 +0100 Updated the dependencies of some plugins. commit c7f819c64ec86bec3124f6c8ee175f53c5204f04 Author: Alan Garny Date: Tue Aug 2 13:25:21 2011 +0100 We want the CellML plugin to be usable from the console version of OpenCOR. commit a1db81adbdfc710911caa855a9759e295b251917 Author: Alan Garny Date: Tue Aug 2 13:11:43 2011 +0100 Added the skeleton of some simulation plugins. commit 472b6c3846ebcceb04d7e79f2a110bae70892347 Author: Alan Garny Date: Tue Aug 2 12:55:18 2011 +0100 Minor update to our main CMakeLists.txt file. commit 08ed92860ddebc5d03f8c46f7cb7a847638616fc Author: Alan Garny Date: Tue Aug 2 12:39:20 2011 +0100 Updated the Qt dependencies of the newly added editing plugins. commit 3fb2e13a31a05e797d6411850efb8e9e138c950f Author: Alan Garny Date: Tue Aug 2 12:27:12 2011 +0100 Added the skeleton of further (editing) plugins: CoreEditing, CoreCellMLEditing and CellMLXMLView. commit 9dfd981feaf566d9b4e87b06b07c0a6d570ff123 Author: Alan Garny Date: Tue Aug 2 11:49:24 2011 +0100 Added, for Mac OS X, the Qt dependencies for the new CellML plugin. commit 54142eaa6e7d68e0e0d12ef97de21c9f620d39a1 Author: Alan Garny Date: Tue Aug 2 11:45:37 2011 +0100 Updated the developer documentation (the file structure). commit b0df3b41cbca8e8af7f11d52517bea65da7af911 Author: Alan Garny Date: Tue Aug 2 11:39:58 2011 +0100 Added the skeleton of a CellML plugin. commit 417e2104ae17812c63df2f843657c151cd96f82a Author: Alan Garny Date: Tue Aug 2 11:24:43 2011 +0100 Updated the main CMake file as a result of renaming some plugin category folders. commit 5e0fa94951dbd4129678c8b8ff1f2bfa1598739e Author: Alan Garny Date: Tue Aug 2 11:19:36 2011 +0100 Oops, forgot to rename [OpenCOR]/src/plugins/misc to [OpenCOR]/src/plugins/application... commit c9ac3aa4c970c94c72707641f6e4a38d4bb52cbd Author: Alan Garny Date: Tue Aug 2 11:15:34 2011 +0100 Renaming [OpenCOR]/src/plugins/edit to [OpenCOR]/src/plugins/editing and [OpenCOR]/src/plugins/organise to [OpenCOR]/src/plugins/organisation. This to be in par with our different plugin categories. commit 1d3337fb20b2c0e0241b89aa2c684363fa21c5fe Author: Alan Garny Date: Tue Aug 2 10:11:31 2011 +0100 Removed, in the developer documentation, a statement about the manageability of plugins since a plugin (e.g. the forthcoming XML editing view for a CellML file) may perfectly be managed by a user and yet be required by another plugin (e.g. the forthcoming CellML simulation plugin). commit f00493c1587eb5b6850b32254c72a456b48b8618 Author: Alan Garny Date: Mon Aug 1 20:05:32 2011 +0100 I had forgotten to update the developer documentation... commit a933425ffa2e068dee0f960fef187dff7acf6dd7 Author: Alan Garny Date: Mon Aug 1 18:34:38 2011 +0100 Done with categorising plugins. commit c8ce4a7769264e8a78424f1c361640b5211fdb2a Author: Alan Garny Date: Mon Aug 1 17:35:53 2011 +0100 Added different plugin categories. commit 39f2090488c63afde4dc172493ffa4ec81afbdf2 Author: Alan Garny Date: Mon Aug 1 16:57:05 2011 +0100 Minor improvement to the plugins window. commit 6654ea972e7750b4f6cd226800cc59ca29012990 Author: Alan Garny Date: Mon Aug 1 16:48:48 2011 +0100 Some further work on the categorisation of plugins. commit 0265f970abc006947cf24ffc7bfecb40ffb732b8 Author: Alan Garny Date: Mon Aug 1 16:01:41 2011 +0100 Working on grouping plugins since we may end up with quite a few plugins. commit 856e73fa1b879e9353e2a9ee6331cb899d6c5533 Author: Alan Garny Date: Sun Jul 31 19:24:37 2011 +0100 Oops, forgot one change! commit 519c744c4db95d55dfec5b593391d4a1596f4916 Author: Alan Garny Date: Sun Jul 31 19:22:20 2011 +0100 Minor updates to the documentation. commit f72d2e08f3d9811f086c81caac8d410b52638f15 Author: Alan Garny Date: Sat Jul 30 14:55:53 2011 +0100 Prevent the Core plugin from being managed by the end-user since there is really no reason for which it should be. commit 899c5ba01c62eaadfad8b4678bd40f8a402b4139 Author: Alan Garny Date: Sat Jul 30 12:34:16 2011 +0100 Simple refactoring of the code related to the Core plugin. commit 23722fa4e484aaa4cdc341f1ad7ae9da051ce46e Author: Alan Garny Date: Fri Jul 29 18:10:05 2011 +0100 Added the contents of our Edit menu for the Core plugin. commit 59e6398c2055777a2b1fc8fbea58d47d4022e88c Author: Alan Garny Date: Fri Jul 29 17:42:43 2011 +0100 Support the addition of menus for the Core plugin, and added an Edit menu. commit 7c1d6deb0bb7d58044cec3431ae4a974d1189090 Author: Alan Garny Date: Fri Jul 29 16:16:29 2011 +0100 Working towards making the Core plugin fully operational. Fixed a small issue with the visibility of the modes and views tab bars not being initialised in the central widget. commit 4da1b4c1319c2bcf75ac0e0da64644d6395a0d16 Author: Alan Garny Date: Fri Jul 29 13:54:57 2011 +0100 Hmm... the last commit doesn'\''t quite work as expected on Linux and Mac OS X, so... commit f78ba78dacda982724105b2d96c56d277e10d1a1 Author: Alan Garny Date: Fri Jul 29 13:49:52 2011 +0100 Minor editing. Also show/hide the modes and views tab bars depending on whether files are opened in the central widget. commit d82c77e29034f3fd3092330cf593c75ed9b64db2 Author: Alan Garny Date: Fri Jul 29 13:02:13 2011 +0100 There had to be a stupid reason for the translation problem with the modes tab bar in the central widget and indeed... there was! commit ce72adf512aae1be2cf9da86ee466b370b94be62 Author: Alan Garny Date: Fri Jul 29 12:29:17 2011 +0100 Minor improvement to the central widget. commit 09ff864a89d657ded7b9d89b6e8d900319ee1ba9 Author: Alan Garny Date: Fri Jul 29 12:24:05 2011 +0100 Still experimenting with the central widget. (Note: there is something going on with the translation of the modes tab bar. First time round, English translations are used, then after switching to French, we still have English translation, but then after switching back to System (i.e. English on my system), we get French translations!) commit 3b1ab647ca635092cfecc59611b9cb3a25ea81bd Author: Alan Garny Date: Fri Jul 29 10:34:33 2011 +0100 Testing things further with the central widget. commit b998077311f666290ba4091a8b4c9d2a506b3136 Author: Alan Garny Date: Thu Jul 28 17:59:47 2011 +0100 Experimenting with the GUI for the different modes: editing, simulation and analysis. commit 8930a23826d561e9bdad95f1c3ab312d927cba60 Author: Alan Garny Date: Thu Jul 28 16:58:41 2011 +0100 Only allow to accept/apply the plugins window if the loading state of a plugin has changed. commit 0f2a61fd76e112710596cdf20aff743005360d5e Author: Alan Garny Date: Thu Jul 28 16:03:59 2011 +0100 Can now apply changes to the loading state of plugins. This means that we get told that this involves restarting OpenCOR. If the user agrees to it, then OpenCOR'\''s settings are saved and OpenCOR restarted. commit 935862ce65809ee2bfe4cea052e0674dc50cb32c Merge: 90e23362e 67d022b1d Author: Alan Garny Date: Thu Jul 28 14:05:56 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 90e23362ebd942756e66e59a3f1b26c69d853b98 Author: Alan Garny Date: Thu Jul 28 14:05:21 2011 +0100 A bit of refactoring with regards to the plugins. commit 67d022b1d6d0c14d9465cc3ca93768f8b09a3ca9 Author: Alan Garny Date: Tue Jul 26 19:59:43 2011 +0100 Another minor update to the developer documentation. commit 31d5aeb934fa0cd8a493068bffdf2dac4195576f Author: Alan Garny Date: Tue Jul 26 19:58:14 2011 +0100 Minor update to the developer documentation. commit 3ed91f9afdd3c0b282e47146d17cdc33d85dc07e Author: Alan Garny Date: Mon Jul 25 19:52:12 2011 +0100 Don'\''t add a border to the tab widget (in the central widget) if on Mac OS X. commit c2e94681730cb8aaf937c91f91d0a5001959ec47 Author: Alan Garny Date: Mon Jul 25 18:42:10 2011 +0100 Removed the dependency on QtSvg. commit 268456f172b5cf88952a642ad48c62a03b5b8013 Author: Alan Garny Date: Mon Jul 25 18:40:23 2011 +0100 Something I hadn'\''t realised when it comes to SVG is that it'\''s quite CPU intensive to render (not surprisingly I guess) and this is somewhat noticeable when resizing the main window which then resizes the central widget'\''s tab widget and therefore re-renders the logo if there is no document opened. So, we are dropping the idea of SVG for this and reverting to a QPixmap which we don'\''t resize when there is not enough space to see all of it (i.e. it doesn'\''t look '\''ugly'\'' as it used to be when shrunk). In the end, I think we have a better solution, so that'\''s good. We will, however, have to remove our dependency on SVG for now... commit 0500d4b4473731e43c87e0324bfa40e3fb7ae797 Author: Alan Garny Date: Mon Jul 25 14:59:36 2011 +0100 Make sure that the logo in the tab view never ends up with dimensions of (0, 0) which would be equivalent to using all of the viewport to render the logo (which is clearly not what we want!). commit 8a2cd1625d8a87f21e9a2e3201324d106c26e9ff Author: Alan Garny Date: Mon Jul 25 13:55:36 2011 +0100 Reorganised the plugin code a bit, so that we now consider the Core and Help plugins as special plugins that need special treatment (as opposed to generic treatment). commit b5049d56307b9387effe89f2fb8ef40a72b13b4b Author: Alan Garny Date: Sun Jul 24 20:00:20 2011 +0100 Edited the SVG version of our OpenCOR logo in Inkscape and added a shadow by ourselves. Then, cleaned up the SVG code and updated the PNG version for the website. commit 770a0f826e83c01167a626ad92ba09154c615fad Author: Alan Garny Date: Sun Jul 24 19:18:48 2011 +0100 Slight improvements to the SVG and PNG versions of the OpenCOR logo. commit b91a0dbde5357bb3310b2ae38cc303cbbaac5343 Author: Alan Garny Date: Sun Jul 24 19:02:32 2011 +0100 Removed a now unnecessary file. commit 25ec0296890f31276b58437e020ee2c01214a28d Author: Alan Garny Date: Sun Jul 24 03:55:50 2011 +0100 Slight update to the website'\''s homepage. commit 6fd2fa3e629c5aec0e423e883e22ab86848d4bff Author: Alan Garny Date: Sun Jul 24 03:21:34 2011 +0100 Minor update to the developer documentation. commit 4923102bad4d6c9872556b0d8608a247e04af872 Author: Alan Garny Date: Sun Jul 24 03:13:30 2011 +0100 Updated the packaging for Mac OS X. commit eee3a93e4f8bbdf1a63bcf847da17ca0bed10983 Merge: dad01b43c 68c1eee58 Author: Alan Garny Date: Sun Jul 24 02:56:26 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit dad01b43c7c1ce868c800b2b6235d12db6726bfd Author: Alan Garny Date: Sun Jul 24 02:55:51 2011 +0100 Minor update to the developer'\''s documentation. commit 68c1eee58713a06d062492ab0849d8b1d2258fb1 Author: Alan Garny Date: Sun Jul 24 02:35:42 2011 +0100 Updated the packaging for Linux (following our use of QtSvg). commit 6368fdc4c8f846967db3aba82a79b3d6498b3514 Author: Alan Garny Date: Sun Jul 24 02:24:51 2011 +0100 Updated the general documentation (i.e. the website'\''s homepage) by adding a PNG version of a shaded SVG version of our logo (Note: we don'\''t use the SVG version itself because some browsers, e.g. Chrome, don'\''t render it properly). Now use a SVG version of our logo in TabWidget since it obviously scales much better than a raw image. Note that this means that we now need QtSvg when deploying OpenCOR. This has been dealt with for Windows, but still needs to be done for Linux and Mac OS X. commit 6a2104212677ef020c6dc1a90138844183a7cb94 Author: Alan Garny Date: Sun Jul 24 00:21:27 2011 +0100 Minor cleaning up. commit cc9f9a428dd6e956bb33032131791d30ead0a70e Author: Alan Garny Date: Sat Jul 23 17:22:49 2011 +0100 The algorithm for resizing the logo in TabWidget was wrong, so... commit aa2c909104b80f953303fedef0a8510d19aca1ae Author: Alan Garny Date: Sat Jul 23 15:50:02 2011 +0100 Minor fix for the resizing of the logo in TabWidget. commit 01dd8534bc089179c1d11fc215919130c4e79552 Author: Alan Garny Date: Sat Jul 23 14:59:08 2011 +0100 Some simple refactoring for TabWidget. commit c8180c49291974338fa324c28c1528212f8ed5ec Author: Alan Garny Date: Sat Jul 23 04:00:44 2011 +0100 Resize the logo if it doesn'\''t fit in the central widget. commit 67cc244c18d2d41774cb0484f8c3af4972547154 Author: Alan Garny Date: Fri Jul 22 20:21:05 2011 +0100 Starting work on making the Core plugin effective within OpenCOR. commit 93acde0558ee031a102e4df2c8e9f1163f9d933b Author: Alan Garny Date: Fri Jul 22 12:38:36 2011 +0100 Include the build directories, so that we can from Qt Creator access the UI header files (e.g. [OpenCOR]/build/ui_mainwindow.h). commit 3fbe8688aa0f344d4d175984e4dec744f4992025 Author: Alan Garny Date: Thu Jul 21 23:27:21 2011 +0100 Minor update to the developer documentation (as a result of installing Qt Creator 2.2.1 at some point in the past?) commit aa163535d9701fcb051d7749fb696f724aec892a Author: Alan Garny Date: Thu Jul 21 08:46:19 2011 +0100 Minor update to the developer documentation. commit 44808134482170c18334d4ca5a7a3a176181a255 Author: Alan Garny Date: Thu Jul 21 01:31:38 2011 +0100 Updated the documentation following our upgrade to Mac OS X 10.7 (Lion). commit 958b9c8085546ee0364dd3d70ff6dae6f518e724 Author: Alan Garny Date: Wed Jul 20 19:31:46 2011 +0100 Fixed issue #44 related to the full screen mode. commit 437fcf5c088c76b70a462c5d6c4d41b34c589590 Author: Alan Garny Date: Mon Jul 18 10:23:49 2011 +0100 Changed the icons used in the plugins window. commit f63fad002200a671e34766d03f73c50d3559d76f Author: Alan Garny Date: Sun Jul 17 17:04:39 2011 +0100 While working on the plugins, I thought it would be a good thing, on Windows, to move the SQLite driver to our plugins folder (i.e. [OpenCOR]/plugins/sqldrivers rather than [OpenCOR]/bin/sqldrivers, since all of our OpenCOR plugins are under [OpenCOR]/plugins/OpenCOR). What I had forgotten is that, by default, Qt looks for non-OpenCOR plugins in [OpenCOR]/bin (or wherever OpenCOR.exe is located). So, that meant that when running a deployed version of OpenCOR, we couldn'\''t see the help. In the end, all that was required, for Windows, was to add [OpenCOR]/plugins to our OpenCOR'\''s library path. commit a854db93a71c20162ccf2eae8841c98dd01e4b0d Author: Alan Garny Date: Sun Jul 17 16:44:16 2011 +0100 Some minor cleaning up. commit aa28b7a3a2201aca6b00090b03fbb4dca533054c Author: Alan Garny Date: Sun Jul 17 16:39:24 2011 +0100 Fixed a minor issue in the user documentation for use in OpenCOR. commit 50144ef25be58eecd23e4e0dd90eefd194c6ab0a Author: Alan Garny Date: Sun Jul 17 16:01:37 2011 +0100 Minor cleaning up. commit a5524472a59287d37b85bedf5b7987500fb7b38f Author: Alan Garny Date: Sun Jul 17 12:45:11 2011 +0100 Reverting the type of icon to show for a plugin in the plugins window. In the end, it only makes sense to have a '\''tick'\'' if the plugin has been loaded. Also fixed a small issue with console-type plugins. Even though they are manageable, they shouldn'\''t be checkable. commit 8f87f4b72030a2ba87486e0bf0e8a4ac80a6a40e Author: Alan Garny Date: Sun Jul 17 12:33:17 2011 +0100 Minor improvement to the plugins window. commit 022288f81d5e23c9e233199d0dcc4df6b05a96da Author: Alan Garny Date: Sun Jul 17 12:24:17 2011 +0100 Fixed another small problem with the plugins window (when a general plugin is not wanted). commit eb3b5e5b6197f3ffcd6c15ffca97854ff7628238 Author: Alan Garny Date: Sun Jul 17 12:12:26 2011 +0100 Minor fix to the plugins window. commit 389d98fc779df403551cba8a18fbc95df8b06c0c Author: Alan Garny Date: Sun Jul 17 11:54:46 2011 +0100 Display a warning message if we want to open the plugins window, but no plugin could be found. This is indeed better than showing the plugins window, since its contents would look rather odd (since no plugin would be listed...). commit 5041e92af0f30a15be789cf7b7721f57973dc11a Author: Alan Garny Date: Sun Jul 17 00:46:13 2011 +0100 Show an icon which, at first glance, indicates whether a problem occurred or not when trying to deal with a given plugin. commit 29f4b05d56fe568c9135bbc609b1adf286f9b4cc Author: Alan Garny Date: Sun Jul 17 00:10:53 2011 +0100 Updated the developer documentation following. Some cleaning up. commit dfde6f38cee0a4b8850bac0aaf89808c9e01f5fc Author: Alan Garny Date: Sat Jul 16 23:51:32 2011 +0100 Implemented a mechanism by which a plugin must specify the version of the interface that it uses. This way, OpenCOR'\''s plugin manager can check that a plugin is compatible with the version used by OpenCOR, and can therefore be loaded (or not!). commit f7f083202ffbbecc4dd0338d76d0a1ea8a80c99d Author: Alan Garny Date: Sat Jul 16 20:04:09 2011 +0100 Minor editing. commit a5bc2d24d7e2107190e4367b2fc64abae9dd79b6 Author: Alan Garny Date: Sat Jul 16 19:55:55 2011 +0100 Minor editing. commit 34e29a7fcd4ca0df696871469eab7d6e1523321d Author: Alan Garny Date: Sat Jul 16 19:45:40 2011 +0100 Done with allowing all the plugins, except those that really don'\''t bring anything at all when loaded on their own (e.g. the QScintilla plugin), to be managed by the user. commit 53c21b9164254661f3b0c71aad477348f6538b3a Author: Alan Garny Date: Sat Jul 16 19:37:59 2011 +0100 Minor reformatting. commit afcacd2ae6d0a49f8851800b63a1a73a7d65a7ef Author: Alan Garny Date: Sat Jul 16 10:17:31 2011 +0100 Working towards allowing all the plugins, except those that really don'\''t bring anything at all when loaded on their own (e.g. the QScintilla plugin), to be managed by the user. commit 82b11d1a631d057bce39c96ac646285360662096 Author: Alan Garny Date: Fri Jul 15 18:40:47 2011 +0100 Minor editing. commit 5f1133e75a0c0ec779e92d6e5d76bc4d34ba5aba Author: Alan Garny Date: Fri Jul 15 18:39:00 2011 +0100 Can now load/save a plugin'\''s settings. commit a4ec2756df5ff7dcb0b0c388d2e8560c0e04528f Author: Alan Garny Date: Fri Jul 15 17:54:46 2011 +0100 Working towards the loading/saving of a plugin'\''s settings. commit b3d95f091482d740186d38ed0a9f74be0a44ec83 Author: Alan Garny Date: Fri Jul 15 17:25:35 2011 +0100 Minor adjustment for Linux and Mac OS X. commit 2f3e5db68712ef91f37e6ed797063b3a9afb15ca Author: Alan Garny Date: Fri Jul 15 17:14:33 2011 +0100 Some simple refactoring and cleaning up. commit 247b01050a8042ec8322860e207b4863d79c6535 Author: Alan Garny Date: Fri Jul 15 14:20:02 2011 +0100 Handle the showing/hiding of the help window through the help plugin'\''s action. commit 986ba6612c582fdf8f50dd930b5565543dd25276 Author: Alan Garny Date: Fri Jul 15 14:09:42 2011 +0100 Can now add a plugin action to a menu and/or a tool bar, and have done it for the Help plugin. Will next need to make the action active. Some minor cleaning up. commit d7c0faeb25d9b53dc3d53376d74a292be433e212 Author: Alan Garny Date: Thu Jul 14 18:38:40 2011 +0100 Working on allowing the plugin to specify actions that are to be incorporated in OpenCOR. commit 6d32520db7c0e1d8ea95eb928d5f98fc5b60d6bd Author: Alan Garny Date: Thu Jul 14 18:05:16 2011 +0100 Minor cleaning up. commit 3c08b1e0df58b54742af77609870a1aec6ab0a55 Author: Alan Garny Date: Thu Jul 14 17:42:21 2011 +0100 Reverted my idea of moving the UI side of MainWindow in MainWindow itself. This wouldn'\''t have solved anything (unfortunately), since to access to the contents of MainWindow, we would need to have it part of the Core plugin (if anything) which is clearly not an option! commit e7a649d8e367c86a5e0e9655e4e1b537767f82fc Author: Alan Garny Date: Thu Jul 14 17:26:38 2011 +0100 Now have our plugins translated when switching languages in OpenCOR. commit ec087d4312056cb9e0b3822b31ea461bb73ff5f7 Author: Alan Garny Date: Thu Jul 14 13:27:10 2011 +0100 Started work on moving the UI side of MainWindow in MainWindow itself, as opposed to having it in mainwindow.ui. The idea is that this will allow plugins to access OpenCOR'\''s GUI in a '\''simple'\'' way. commit ebefb1c39ecf947187576d035263aa48421b6da0 Author: Alan Garny Date: Wed Jul 13 18:26:24 2011 +0100 Oops, reverted something that I should have reverted! commit 5d2e19091a40663c2aa29227b1b209e14a86dd44 Author: Alan Garny Date: Wed Jul 13 18:22:00 2011 +0100 Minor improvement by passing a MainWindow object rather than a QMainWindow object to GUI plugins. commit 8f42a00a06279a0b2708e2b7e745729aec0b8316 Author: Alan Garny Date: Wed Jul 13 17:39:55 2011 +0100 Minor improvements to our Help plugin. commit 263d501acbcfc60e3c422e847431127c38ee1919 Author: Alan Garny Date: Wed Jul 13 17:33:11 2011 +0100 Some cleaning up. Also fixed some issues with the help (which we couldn'\''t test earlier, but now can since the Help plugin can be loaded). commit 83715e332be9febb1c495832ab1bbd09e97d92bd Author: Alan Garny Date: Wed Jul 13 17:24:45 2011 +0100 Minor translation update. commit 6c97514069e6b8aa9adf02ea426ce4543539e456 Author: Alan Garny Date: Wed Jul 13 16:04:35 2011 +0100 Improved the plugins window. commit e22cd23f1b112b75a037300fcb3f3487481348a8 Author: Alan Garny Date: Wed Jul 13 15:36:55 2011 +0100 Only load the plugins that the user wants to load. Handle the checking/unchecking of plugins from the plugins window. commit 4454863bdf37119f0c04ef5da38de1daa42ea5eb Author: Alan Garny Date: Wed Jul 13 10:54:04 2011 +0100 Very minor refactoring. commit e0ffb514e3179f5d59c73772add134dcd2337407 Author: Alan Garny Date: Wed Jul 13 10:33:40 2011 +0100 Fixed an issue with the size of the plugins window. commit cfe2d8ed1ac1f7f129df53317c417d9cbaf5104a Author: Alan Garny Date: Wed Jul 13 10:10:09 2011 +0100 Updated a comment about ordering the loading of the plugins, now that things have been tested on Mac OS X. commit efc0370f9c315694c1f786c984e8db0c054ff49e Author: Alan Garny Date: Tue Jul 12 17:57:22 2011 +0100 Working towards handling changes made by the user to the plugins window. commit 7f49e34630e6ce0a11ff6eacdfabfd8e0346556d Author: Alan Garny Date: Tue Jul 12 17:01:43 2011 +0100 Some cleaning up. commit a4c405a3a5940500b6c583f3124d889e7188f722 Author: Alan Garny Date: Tue Jul 12 15:48:26 2011 +0100 Further work on the windows plugin. Now, we can retrieve whether a plugin should be shown as being to be loaded. commit 4cfe4df5c00464f38684be6baf20bba1f22eb6b7 Author: Alan Garny Date: Tue Jul 12 14:57:11 2011 +0100 Minor improvement to the plugins window. commit 2e3a39fc5bcec532a0bc33590931e740a1bc68aa Author: Alan Garny Date: Tue Jul 12 14:38:39 2011 +0100 List missing plugin dependencies, should there be any. Also ensure that plugins are loaded in the right order (i.e. respect the plugins'\'' dependencies). commit 8c8307da8cde8fe1dfbb50cdd96521457743d860 Author: Alan Garny Date: Tue Jul 12 13:50:55 2011 +0100 Check, on Linux and Mac OS X, that a plugin'\''s dependencies have been loaded. commit 19352f0b63ac7136596b5d4e8127c132b44d6a71 Author: Alan Garny Date: Tue Jul 12 13:18:21 2011 +0100 Slight improvements to the plugins window. commit a759466cbb8d0f7f406f89b9c38eaeeb388e2a04 Author: Alan Garny Date: Tue Jul 12 12:25:46 2011 +0100 Improved the status description of a plugin in the plugins window. commit 6be3711ac5f44ac46776953b54385d3c0601b117 Author: Alan Garny Date: Tue Jul 12 11:43:02 2011 +0100 Some more work on the plugins window by adding the status of a plugin. commit f3736e89b09609d1a932c122be25920ae05b7bad Author: Alan Garny Date: Mon Jul 11 23:23:02 2011 +0100 There is a strange issue with the word-wrapping of the description value in the plugins window. If the description requires several line, then widening the window should normally get the description to fit on one line. However, all that happens is that line 2..n eventually disappear and the first line only contains the text that was there in the first place...!? commit dd97f2cb51daea858d569fa66fa6b2189a5ed7b6 Author: Alan Garny Date: Mon Jul 11 22:50:21 2011 +0100 For some reasons, the C++ compiler on Mac OS X doesn'\''t like our direct use of QMap for the default value of pDescriptions in the PluginInfo constructor (in src/plugins/plugininterface.h), so... we defined a type for it and now everything'\''s fine. commit efa73148d4341b009f615fe3581c6776ec5eb8a4 Author: Alan Garny Date: Mon Jul 11 15:03:03 2011 +0100 Updated the developer documentation with regards to plugin development. commit c91f6d378372823afff01870e6f895d467c74882 Author: Alan Garny Date: Mon Jul 11 14:23:58 2011 +0100 Some minor simplification to our common.cmake file. commit 79c13e45a66ea05b30b5447be31f517207682e06 Author: Alan Garny Date: Mon Jul 11 13:46:59 2011 +0100 Some cleaning up following our slight change of strategy for the translation of plugins'\'' descriptions. commit 9137f3d2106e6dc56140e18d8ce0304118396333 Author: Alan Garny Date: Mon Jul 11 12:56:07 2011 +0100 Changed the way a language-specific description of a plugin is obtained. Indeed, I initially thought of taking advantage of Qt'\''s translation feature, but having thought more about it I cannot see how it could be applied in the case of our PluginInfo() function which is available from the plugin file, but is not part of the plugin itself. So, instead, the different translations of a plugin'\''s description are in the plugin.cpp file as a map of descriptions which can then be used to retrieve the right description based on the application'\''s locale. Note that for the plugin itself, we should definitely be able to take advantage of Qt'\''s translation feature... commit 6891c546e4eea2f544c6ce02333db205c524cb80 Author: Alan Garny Date: Sun Jul 10 01:20:13 2011 +0100 Addressed the issue of native vs. non-native painting of a plugin item in the plugins window. commit 91336f86e22f782733ed03f92012442c44bebf62 Author: Alan Garny Date: Sun Jul 10 00:39:35 2011 +0100 Can now see the information of all the plugins in the plugins window. However, the selection of a plugin item doesn'\''t look as as good (on Windows at least) as before when were not using a delegate. Why is that?! Otherwise, did some minor cleaning up. commit d204fc8f1c9412739c7c58e820fea300c621c0cc Author: Alan Garny Date: Sat Jul 9 19:29:23 2011 +0100 Minor improvement to the plugins window. commit c4f3b63e058e6432c83640c239efa0be326d7d3e Author: Alan Garny Date: Sat Jul 9 17:52:55 2011 +0100 Handle the activation of a link in the description of a plugin in the plugins window. Minor improvements to the plugins window too. commit f79960c2df5be7e7e18d1fc5fcc3f64e18141406 Author: Alan Garny Date: Sat Jul 9 17:34:42 2011 +0100 Refined the plugins window. Getting there... with a first '\''draft'\'' of it... commit e99c042a04a3bb836236a92d7b5e823e91d14d52 Author: Alan Garny Date: Sat Jul 9 17:05:12 2011 +0100 A bit more work on the plugins window. commit aac83269df470dcf37f4fa00921cbbf4cb555660 Author: Alan Garny Date: Sat Jul 9 15:32:35 2011 +0100 Worked some more on PluginsWindow. commit 498d51cbb2d620fdf6b79bc463b59447cd09bc0c Author: Alan Garny Date: Fri Jul 8 19:57:11 2011 +0100 Prevent the list of plugins in PluginsWindow from being edited. commit f3f98f541bc489fa7f9d79d6eebeb9a42a3e8d06 Author: Alan Garny Date: Fri Jul 8 18:03:56 2011 +0100 Some work on the plugins window. Some minor cleaning up. commit a879db37c0bf0918557dd1d32faadb9c9bf91e15 Author: Alan Garny Date: Fri Jul 8 15:49:51 2011 +0100 Added a description for the plugins. This involved a bit of reworking since translations are now required for all the plugins. Updated the developer documentation with regards to plugin development. Remved the CellML plugin, since we are not making use of it at this point (indeed, it'\''s empty!). commit 1268632dca0ec8bceaeed5e75d1f5677a61edb52 Author: Alan Garny Date: Fri Jul 8 11:27:30 2011 +0100 Improved the default contents CheckForUpdatesWindow, PluginsWindow and PreferencesWindow. commit 5dfd3244527bbe74047c343cd578ed58754e6a9c Author: Alan Garny Date: Fri Jul 8 10:51:38 2011 +0100 Made the GUI Interface inherit from our Plugin Interface. Also some cleaning up. commit ac169c0c71f134b5b399da84a5e792432a594827 Author: Alan Garny Date: Thu Jul 7 17:35:08 2011 +0100 Minor update to the documentation. commit c913111ab5c4f8eb66c2ceb3031c3df3d98c27d5 Author: Alan Garny Date: Thu Jul 7 16:59:03 2011 +0100 Made the check for updates window accessible from the GUI. commit 55213593d2d3611cddb59d322d43ef77eff31c42 Author: Alan Garny Date: Thu Jul 7 15:53:39 2011 +0100 Made the plugins window accessible from the GUI. commit 267d92eb6ad8ad2c23965b0de459d8be8e2a8335 Author: Alan Garny Date: Thu Jul 7 15:43:14 2011 +0100 Made the prefererences window accessible from the GUI. commit 833aa7f7ad192ba8878fc8361b8a89924545c6a4 Author: Alan Garny Date: Thu Jul 7 15:23:48 2011 +0100 Moved the CheckForUpdatesWindow, PluginsWindow and PreferencesWindow to OpenCOR itself. Same reasons as for the last couple of commits. commit cc498eae60dba7fdcee41414a4dd5c4f344803c5 Author: Alan Garny Date: Thu Jul 7 11:44:02 2011 +0100 Moved the MainWindow code one directory up, and updated the documentation accordingly. commit bbe2ca8c2a209e7a86ef1175f396ebd436b6a07c Author: Alan Garny Date: Thu Jul 7 11:31:47 2011 +0100 Moved the version manager back to OpenCOR itsel, as opposed to having it as a plugin. Indeed, since we may very well run OpenCOR withuot any plugin at all, we might want to have the version manager to be part of OpenCOR itself, so we can update things, if necessary. commit 3a28bbd4837be4b44632b072aa6779674c898085 Author: Alan Garny Date: Wed Jul 6 22:36:26 2011 +0100 Now, only load the plugins and their dependencies, and not the plugins that are not required. commit 46efe23a8be00c04ab18f697a57ff6194762e257 Author: Alan Garny Date: Wed Jul 6 20:07:25 2011 +0100 Minor cleaning up. commit 9767867024d11f5ce3805803f526c55d8215f95c Author: Alan Garny Date: Wed Jul 6 19:56:13 2011 +0100 Some simple refactoring. Working towards only loading the plugins that are necessary, i.e. self-contained plugins are only loaded if actually needed. commit 7123c2b621ae68861efe31b242a739e09cbee1f6 Author: Alan Garny Date: Wed Jul 6 18:44:01 2011 +0100 Playing yo yo, i.e. removed the manageable property for plugins, since (currently, at least) if a plugin doesn'\''t have any dependencies, then there is no need to load it, unless it'\''s required by a plugin that is to be loaded. Also reintroduced the Plugin::name, Plugin::fileName and Plugin::info functions, since they are going to be useful to determine which self-contained ('\''unmanaged'\'') plugin should be loaded. commit d49e39dfa8e63927732f3d8c6b8bec8c4be9d676 Author: Alan Garny Date: Wed Jul 6 17:38:16 2011 +0100 Specify whether a plugin can be managed by the user. For example, the Core plugin cannot since it should only be loaded if actually needed by another plugin. On the other hand, the Help plugin can be managed, since the user should be allowed to decide whether to have it loaded. commit e48ea4993207b29e6c2de963d1b6ed6e3cfe1c24 Author: Alan Garny Date: Wed Jul 6 17:08:45 2011 +0100 Worked some more on the plugins. commit fb66626dcdf1d32906b7ebb3db824fc55e334e89 Author: Alan Garny Date: Wed Jul 6 12:03:19 2011 +0100 Further update to the user'\''s documentation. commit 55c23de6371f644b36eb5c2c39dca904b1e79cd2 Author: Alan Garny Date: Wed Jul 6 11:55:18 2011 +0100 Minor update to the user'\''s documentation. commit ca5637db423a223c8c4addbadd02184724318baf Author: Alan Garny Date: Wed Jul 6 11:50:47 2011 +0100 Added an initialize and a finalize method to the plugin interface. commit 8642d8f203c8cd5acea41e5d5444b8c4a3a7370b Author: Alan Garny Date: Wed Jul 6 11:09:08 2011 +0100 Plugins are now in their own namespace. Updated the developer'\''s documentation. commit 9488d764cf4d52f5d7bedc04e5aa978070ae657f Author: Alan Garny Date: Wed Jul 6 09:12:41 2011 +0100 Make sure that, on Windows (note: it doesn'\''t apply on Linux and Mac OS X), our plugins refer to either the debug or release version of the Qt libraries, depending on the version of OpenCOR we want to build. commit aae8aa02f9c1b752493808ad14ed522b72b793c3 Author: Alan Garny Date: Tue Jul 5 19:19:10 2011 +0100 Ok, the only reason our call to QMessageBox::information from the GUI interface'\''s setupUi method wasn'\''t working was because I had a '\''dirty'\'' build environment. To do a clean build solved the problem. Doh! commit 75261f6a6e0019845737a38dd080f79c1a37a016 Author: Alan Garny Date: Tue Jul 5 17:54:38 2011 +0100 Removed some debug traces. commit 9ecd4b8da15864278dfc87b338d36ddb32861107 Author: Alan Garny Date: Tue Jul 5 17:49:24 2011 +0100 Found out why the plugins wouldn'\''t work. I had forgotten to add Q_INTERFACES(OpenCOR::GuiInterface) in their class definition. Otherwise, our call to QMessageBox::information from the GUI interface'\''s setupUi method doesn'\''t work...?! commit b966dfe4223c5c8a5974549ea1127524d0a4d3eb Author: Alan Garny Date: Tue Jul 5 16:55:02 2011 +0100 Simple refactoring. Also added a GUI interface so that our plugins can start being useful. It'\''s not working at the moment though, so I am clearly still missing something here... commit bdea7dc578da44b3ec866263b7536a4070fb69c8 Author: Alan Garny Date: Tue Jul 5 15:05:28 2011 +0100 Minor update. commit 661182aff12f18ed3656b5d57960831ee7a2cb12 Author: Alan Garny Date: Tue Jul 5 14:28:36 2011 +0100 Getting there with the loading of plugins... I think, I hope! commit 628a5708465eeceb2eb5c3cec1cd702228a875c9 Author: Alan Garny Date: Mon Jul 4 18:11:02 2011 +0100 More minor refactoring. commit 078605cabc3963b409ae12edf2087072a2fe987a Author: Alan Garny Date: Mon Jul 4 18:06:00 2011 +0100 Minor refactoring. commit dfaa518fc7f9511c889dd0c2cd0680fe0c15716b Author: Alan Garny Date: Mon Jul 4 17:45:48 2011 +0100 Simple refactoring. commit d5dc7d6a3c5187f68bfcb90094847771b5997157 Author: Alan Garny Date: Mon Jul 4 13:55:37 2011 +0100 Some cleaning up, now that we are pretty much done with the loading itself of plugins. commit 803ab87a4a89abe5f15791b5b8c4cd0b3e10eb4f Author: Alan Garny Date: Mon Jul 4 13:46:11 2011 +0100 Hmm... ok, all that business about extracting (from the PE header) a plugin'\''s dependencies, etc. is not necessary! All that was required was to set the current directory to that of the plugins folder (!!). commit a823bc487880b65cd129e0b117a95c5a963ee3a7 Author: Alan Garny Date: Sun Jul 3 19:19:47 2011 +0100 Can now, on Windows, determine a plugin'\''s dependencies (from the PE header). Check http://www.qtcentre.org/threads/42849-Plugin-can-load-or-not-depending-on-whether-my-app-is-launched-from-Qt-Creator-or-not?p=196011&posted=1#post196011 for some background on the reason behind this. commit 9a97fa47643ba1c83bfca21f2f2b6e9ee36e6fc0 Author: Alan Garny Date: Sun Jul 3 03:03:53 2011 +0100 Minor editing of a foreach statement in pluginmanager.cpp. commit 051b7b84f857d44ca6efb9fbc56949315635f6b8 Author: Alan Garny Date: Sat Jul 2 17:21:27 2011 +0100 Typo in the plugin information function. (Strange that it still worked despite the case difference!) commit 4e58a2f8678dfbaec9af667d203eb6a6f282d8bb Author: Alan Garny Date: Sat Jul 2 10:18:46 2011 +0100 Minor editing. commit 2cda30bf4013d11f750fcc92b4b29089a1cc84a8 Author: Alan Garny Date: Fri Jul 1 20:06:49 2011 +0100 Oops, slight Linux / Mac OS X overlook in the last commit. commit fddca02e39440174c8262fd9fc629e80aa2db7e2 Author: Alan Garny Date: Fri Jul 1 19:59:52 2011 +0100 Now load the plugins in the right order (i.e. take into account plugin dependencies). Strangely enough, though, a debug version can load all of the plugins, but the release version cannot load the CellMLModelRepository plugin. QFileInfo::exists() reports that the file exists, but then QLibrary::load cannot load it (?!). Something to investigate... commit 6f3ed28202172aed2f228b1741f114b71615277e Author: Alan Garny Date: Fri Jul 1 11:48:52 2011 +0100 Minor refactoring. commit 8b5f1cbc61a8fc2f9b528d9b486fa3ae03b7e536 Author: Alan Garny Date: Fri Jul 1 11:30:39 2011 +0100 Made the plugin manager console/GUI specific. commit 3c8c491b8a7f3e2caee105517e6dc7ecfe9e304d Author: Alan Garny Date: Thu Jun 30 18:27:35 2011 +0100 Some refactoring of plugin-related code. Some more work towards the loading of plugins. commit 3fe5f1016a310c86ad9f71fa94f69a416d2e2cbf Author: Alan Garny Date: Wed Jun 29 20:41:53 2011 +0100 Fixed a small issue with loading plugins on Linux and Mac OS X. commit e5d96dfd4c5a6295ab0565a696f0240f5ab21462 Author: Alan Garny Date: Wed Jun 29 20:31:59 2011 +0100 Cleaned up and fixed the developer documentation, as well as updated our plugins page. commit 849f1c20c7a6506453ec83446bbd2b5b9877d0fd Author: Alan Garny Date: Wed Jun 29 20:12:38 2011 +0100 Aesthetic changes... commit 91dc69711c781c1f856dc605fcacf2b5f6e409d0 Author: Alan Garny Date: Wed Jun 29 20:04:57 2011 +0100 Can now extract the plugin information about its dependencies, if any, and its type (console, GUI or both). commit 48ac28d3bb06825ddce73577ac1f489520b87ece Author: Alan Garny Date: Wed Jun 29 16:44:26 2011 +0100 Slight refactoring for the QtMmlWidget plugin. commit 59fc6cc36ab5042b914a8b27302cfa7ae4b26ddf Author: Alan Garny Date: Wed Jun 29 16:07:07 2011 +0100 Minor update to the developer documentation. commit 0e8586c6ea97da37418166576470f50ac8874d6d Author: Alan Garny Date: Wed Jun 29 16:02:35 2011 +0100 Resuming work on the loading of plugins. commit f966bf8c8d984e76eecbcb51f6f0d3a08a6a074f Author: Alan Garny Date: Wed Jun 29 15:47:59 2011 +0100 Aesthetic update. commit 8025797859fecdea98986740a97133c93554f5ee Author: Alan Garny Date: Wed Jun 29 15:36:15 2011 +0100 Updated the Oxygen icons to version 4.6.90 from version 4.6.2. commit 5b444f6364664df8b3d8bf4eb5e5257745842ba5 Author: Alan Garny Date: Wed Jun 29 15:13:42 2011 +0100 Minor documentation update. commit 46e7aa8621c5b03a5c07a04a837eb8d6d9e7b677 Author: Alan Garny Date: Wed Jun 29 15:03:20 2011 +0100 Oops, forgot to remove an obsolete link. commit 21ab2b7869b6ceca18f0d1c1d8cb7447398cfabe Author: Alan Garny Date: Wed Jun 29 15:00:33 2011 +0100 Some more update to the developer documentation. commit d9275423f294c1776cacc09b7f92d4a145918220 Author: Alan Garny Date: Wed Jun 29 14:25:59 2011 +0100 Further updates to the developer documentation. commit 3cc0994e35400758272b98286a8843db2b1dc347 Author: Alan Garny Date: Wed Jun 29 13:57:40 2011 +0100 Updated the developer documentation. commit 1fccd736036c5a1aefd6ad24a2c6535eace5940c Author: Alan Garny Date: Wed Jun 29 12:15:30 2011 +0100 Working towards loading the plugins properly, i.e. respecting their dependencies. commit c81272628f031be370fcc57525b4cb30574138f9 Author: Alan Garny Date: Tue Jun 28 00:04:45 2011 +0100 Very minor update to the developer documentation (plugins). commit 2670960868780f2d954eb3466d55375ebd010ed3 Author: Alan Garny Date: Tue Jun 28 00:02:09 2011 +0100 Updated the developer documentation for plugins. commit 09ba8644deee87c8dc7ddd7787addd08ba3bcbc2 Author: Alan Garny Date: Mon Jun 27 23:47:11 2011 +0100 Replaced tabs with spaces in qtdependencies. commit 3445f3c78ce8b51fe821086cf8d89c1a0b6b65af Author: Alan Garny Date: Mon Jun 27 23:38:59 2011 +0100 Improved our qtdependencies shell script. commit b63842cfb0df23459d9bf6fc5590d9f68dbd78b6 Author: Alan Garny Date: Mon Jun 27 19:46:08 2011 +0100 Changed the right accesses to qtdependencies. commit 36a87fee9cfbbd4d08629c53e7d3e879347ec530 Author: Alan Garny Date: Mon Jun 27 19:44:56 2011 +0100 Minor update to the developer documentation. commit f5c34dffb1b1de7b0f26f7b5eac20ea2ea72052d Author: Alan Garny Date: Mon Jun 27 17:30:33 2011 +0100 Fixed an issue that prevented a release version of OpenCOR from loading the plugins on Windows. (CMAKE_BUILD_TYPE needed to be set in the case of the release version and finding the Qt4 package needed to be done after setting CMAKE_BUILD_TYPE.) commit c32530f8655645203dc839341ce22b76748a5c01 Author: Alan Garny Date: Mon Jun 27 16:35:29 2011 +0100 Oops... commit bd735071553a1c976fbf0480bf8c25c11f629d76 Author: Alan Garny Date: Mon Jun 27 16:34:34 2011 +0100 Cleaned up the INITIALISE_PROJECT CMake macro. commit 350fe234ce03a97053af0a3b2e0d94d7ae3b0410 Author: Alan Garny Date: Mon Jun 27 15:50:26 2011 +0100 Some cleaning up of our CMake code. commit 5c0acd004da8d460969e1ecb2ad6b89acc4e0211 Author: Alan Garny Date: Mon Jun 27 15:00:46 2011 +0100 Revised the deployment of plugins on Windows and Linux. Fixed some minor mistakes. Slight revision to pluginmanager.cpp. commit 6accd1a3d0e20b58f14024afb31883c8aa102d65 Author: Alan Garny Date: Mon Jun 27 12:13:18 2011 +0100 Reorganised and cleaned up our help. commit 76fdba0287e5c4a23bc01ad4a6354243a2cd23c4 Author: Alan Garny Date: Mon Jun 27 11:38:20 2011 +0100 Updated the developer documentation to account for our work on plugins. commit ab6c1f4c9de9b5760859df1cf7a4b2985288b6e3 Author: Alan Garny Date: Sun Jun 26 18:42:15 2011 +0100 Minor improvements to the Windows and Linux packagings. commit 3de0a912ed777a5fb3dab9da927decebaf63706e Author: Alan Garny Date: Sun Jun 26 11:00:28 2011 +0100 I think I now know why QtHelp and QtWebKit were not being deployed by macdeployqt (and therefore prevented OpenCOR from working properly). So, updated a comment to reflect this. commit 3a14bccc059e088a2407289f2e046f766a891822 Author: Alan Garny Date: Sun Jun 26 02:53:14 2011 +0100 Minor editing. commit b4db4c7bdc360d54922d9e320e783be3768df10f Author: Alan Garny Date: Sun Jun 26 02:44:14 2011 +0100 Finally got it! Now, we also deploy QtHelp and QtWebKit, meaning that OpenCOR works fine and doesn'\''t have any problem of Qt dependencies. Wow, very long, but very good day at '\''the office'\''! commit cd9059cd8a1ec281b52644e8ed526e6fb0266910 Author: Alan Garny Date: Sun Jun 26 00:10:12 2011 +0100 Fixed a couple of things in the OpenCOR dependencies of plugins (on Mac OS X). Our current use of install_name_tool seems reasonable to me now. Yet, though one can launch OpenCOR on Mac OS X (and the plugins load fine or so it seems), it nonetheless remains that the application doesn'\''t respond and all that one can do is to '\''manually'\'' close it (by clicking on the top left red button). Apparently, we are still using two different versions of QtGui: our own and the one on my development system (/Users/Alan/OpenCOR/build/OpenCOR.app/Contents/MacOS/../Frameworks/QtGui.framework/Versions/4/QtGui and /Library/Frameworks/QtGui.framework/Versions/4/QtGui)... commit 6958d1c642e5eedd8098e4818a99d83cb549cfde Author: Alan Garny Date: Sat Jun 25 19:32:47 2011 +0100 Aesthetic update. commit 8b785a8d98640c56ac150ead318aa6397040601c Author: Alan Garny Date: Sat Jun 25 16:40:16 2011 +0100 Following the refactoring in the previous commit, refined the macro and applied it to the other plugins. commit ef831fc195bbfef2b80d0d4a877ef4a7014751cd Author: Alan Garny Date: Sat Jun 25 16:10:10 2011 +0100 Combining all the CMake code for a plugin into one big nice macro, and tested it with the QtMmlWidget plugin. commit 835f78e3ee3a82b52d44193a2587c0cbe255ce7c Author: Alan Garny Date: Sat Jun 25 13:10:18 2011 +0100 Working towards making sure that our plugins refer to our embedded version of our plugins and Qt libraries. Still not quite there though, despite things looking right, e.g. Alan@Venus:~/OpenCOR/build/OpenCOR.app/Contents/PlugIns/OpenCOR$ otool -L libCore.dylib libCore.dylib: @executable_path/../PlugIns/OpenCOR/libCore.dylib (compatibility version 0.0.0, current version 0.0.0) @executable_path/../Frameworks/QtCore.framework/Versions/4/QtCore (compatibility version 4.7.0, current version 4.7.3) @executable_path/../Frameworks/QtGui.framework/Versions/4/QtGui (compatibility version 4.7.0, current version 4.7.3) /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.9.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 125.2.11) Alan@Venus:~/OpenCOR/build/OpenCOR.app/Contents/PlugIns/OpenCOR$ commit f1d13b0c6db4712f2cea94bd2616e0973d97a98e Author: Alan Garny Date: Sat Jun 25 10:06:03 2011 +0100 Make sure that the CellML, Core, QScintilla, QtMMlWidget, VersionManager and Viewer plugins use the right Qt libraries. (Note: yes, we have yet to do the same for the CellMLModelRepository, FileBrowser, FileOrganiser and Help plugins.) For the record, to find out which Qt libraries a plugin (or any other shared library for that matter) uses, one should use: otool -L . commit bdac3b7426046ded2a36e43d19a36cd6f5598512 Author: Alan Garny Date: Sat Jun 25 09:41:18 2011 +0100 Minor cleaning up. commit d902732de641fe21e034f4d92fb12c52877a4734 Author: Alan Garny Date: Fri Jun 24 20:42:58 2011 +0100 Ok, to remove the whole contents of the PlugIns directory was a bad move! Instead, we should only remove things that gets created by macdeployqt. Otherwise, this means that we can re-add the checking of the sqldrivers and OpenCOR folders under the PlugIns directory... commit 20926754f2c24b966bc8e5e86885c9e566422bd3 Author: Alan Garny Date: Fri Jun 24 20:26:34 2011 +0100 Slight improvements to our CMake code for Mac OS X. Basically, we delete the whole contents of PlugIns before building things (after having built the project before). If we don'\''t do that, then we will get various errors about not being able to copy the Qt libraries. As part of that process, we don'\''t check whether the sqldrivers folder exists under the PlugIns folder. Indeed, if we were to keep checking, then the SQL drivers wouldn'\''t get copied properly (?!). For consistency, we don'\''t check for the OpenCOR folder under the PlugIns folder either. commit cd5d8e6a24322a508acd73221493d27512ffab26 Author: Alan Garny Date: Fri Jun 24 19:54:25 2011 +0100 Make sure that the Viewer plugin uses our version of the Qt libraries. commit 62eb35a7e59dbe0178ae58b7e473201d9bce3433 Author: Alan Garny Date: Fri Jun 24 19:05:47 2011 +0100 Made the FileOrganiser plugin a '\''proper'\'' plugin. commit bfa71f0c2771879234fdcc42f8e11fe85e333cc6 Author: Alan Garny Date: Fri Jun 24 19:00:10 2011 +0100 Made the FileBrowser plugin a '\''proper'\'' plugin. commit 4ec45460f03f5e1c3e9df6cef3a4f57f678de518 Author: Alan Garny Date: Fri Jun 24 18:55:39 2011 +0100 Made the CellMLModelRepository plugin a '\''proper'\'' plugin. commit 42a73e1f7c0f63819c13b2456e1c8b482098342f Author: Alan Garny Date: Fri Jun 24 18:49:52 2011 +0100 Made the Help plugin a '\''proper'\'' plugin. commit 5cfcd472ccecfe497015b893e7e967605736d4de Author: Alan Garny Date: Fri Jun 24 18:22:22 2011 +0100 Minor update to the loading of plugins. commit 095e490fec04557382472131d33c2ea7782c889c Author: Alan Garny Date: Fri Jun 24 18:14:49 2011 +0100 Made the Core plugin usable by other plugins. This means that now, the Viewer plugin (which needs the Core and QtMmlWidget plugins) builds fine and can be loaded as a '\''proper'\'' plugin. Yeah! commit 4b824df80d339ee4ccf4885a9095e070a4d9d904 Author: Alan Garny Date: Fri Jun 24 18:02:55 2011 +0100 Some cleaning up, as well as made the QtMmlWidget plugin usable by other plugins (or, rather, it seems like it should work!). commit bdcc2ddd182801da80b5b8dac7fd8f12e9ac455a Author: Alan Garny Date: Thu Jun 23 17:15:32 2011 +0100 Minor update to the main CMakeLists.txt file. commit 637f825ea3c6f1bdbcb5e76d2022acec2759c452 Author: Alan Garny Date: Wed Jun 22 19:56:20 2011 +0100 Added a new plugin-specific CMake macro to make sure that a given plugin refers to our embedded version of the Qt libraries which it needs. Without that, OpenCOR would sitll work, but we 1) would get loads of warning messages on the console and 2) Cmd+Q wouldn'\''t work close OpenCOR anymore. There might also be other side effects, but those are the two obvious ones I observed. Anyway, now it'\''s all fine! commit dcbb50c6a75e2c3f1f6a1beb1e0d9090bfcf15a5 Author: Alan Garny Date: Wed Jun 22 18:12:08 2011 +0100 Minor refactoring. commit 8b017660a71599d8d65649d4715caccaf7af739f Author: Alan Garny Date: Wed Jun 22 17:32:56 2011 +0100 Made the VersionManager plugin a proper plugin. commit a9d2c9cb6223f3ee8e78d1c1efe5bbbde26d76b5 Author: Alan Garny Date: Wed Jun 22 16:53:24 2011 +0100 Made the CellML, QScintilla and QtMmlWidget plugins proper plugins. commit c7787bc4e1cc8c43215a913f3ad45e9c14801ff0 Author: Alan Garny Date: Wed Jun 22 16:30:15 2011 +0100 Made the Core plugin a proper plugin, i.e. it can now be loaded. Disabled the other plugins for the time being. commit 3488110fda47a2f29a17fa99f148a7b02378a3ba Author: Alan Garny Date: Wed Jun 22 13:37:08 2011 +0100 Addendum to the previous commit. commit 51c3e7399d39398f7e43e0296056f5520a2843ac Author: Alan Garny Date: Wed Jun 22 13:31:09 2011 +0100 Working on loading the plugins which currently fails since our '\''plugins'\'' are only shared libraries at this stage. commit 3ee5b55c167879005f5a9f70fabaa54823563f23 Author: Alan Garny Date: Tue Jun 21 15:11:40 2011 +0100 Minor typo. commit 980a8e14dc878d4c6246ba6bc4126f4aecd8a17d Author: Alan Garny Date: Tue Jun 21 09:14:39 2011 +0100 Minor update to the developer documentation following the release of Qt Creator 2.2.1. commit 66c5b5b9d5e64134c988f0797ea9bc99eed0a7bf Author: Alan Garny Date: Mon Jun 20 19:44:57 2011 +0100 Moved the plugins to PlugIns/OpenCOR on Mac OS X, thus ensuring that there is no risk of plugins being mixed up (since a Mac OS X bundle includes everything that is required by a Mac OS X application and in our case, there are definitely other plugins, so...). commit ab2c7a1107d44c38b4be835201d0735d6bd3411f Author: Alan Garny Date: Mon Jun 20 19:16:34 2011 +0100 Minor fix to PluginManager for Mac OS X. commit 4870a26489640adcccbc56700beb2add8919fee7 Author: Alan Garny Date: Mon Jun 20 17:59:20 2011 +0100 Can'\''t just move the plugins, since on Linux (and I imagine Mac OS X), the .so file contains import information and may therefore (e.g. in the case of the Core plugin) be required to build a plugin (e.g. the Viewer plugin), so... commit ff730d52124991cf9f487e0ed8925915b7cc16af Author: Alan Garny Date: Mon Jun 20 17:53:26 2011 +0100 Working on the loading of plugins. commit 70f4e921b392813fb45ecf7af47266b2020c403d Author: Alan Garny Date: Mon Jun 20 17:36:19 2011 +0100 Straightforward refactorisation. commit 299c108b9eb19958f4fc7d2ba36a0989f5dd9f0c Author: Alan Garny Date: Mon Jun 20 17:04:19 2011 +0100 Started work on automatically loading the plugins. commit d903a435fdf0ba3302d7382efe6f506cd849ff41 Author: Alan Garny Date: Mon Jun 20 16:36:52 2011 +0100 Some more cleaning up, including moving (rather than copying) a plugin from the build folder to the plugins folder. commit a3fe1878b506f3d569048939d0cdd21001fba10f Author: Alan Garny Date: Mon Jun 20 16:32:28 2011 +0100 Made VersionManager a plugin. Some simple cleaning up. commit 3136d0eca1ed5341793941e9ee53fd68b11bba61 Author: Alan Garny Date: Mon Jun 20 16:13:58 2011 +0100 Minor cleaning up. commit 7be598740137694fdb2bfee2024692ec99cd3498 Author: Alan Garny Date: Mon Jun 20 15:59:27 2011 +0100 Minor update to the developer documentation. commit 6fa895eb62ce8fd3f5ae5be6179d518ca147f385 Author: Alan Garny Date: Mon Jun 20 15:42:49 2011 +0100 Moved Info.plist.in from the res folder to the distrib folder since this is where it ought to be. commit 407d6355ffbfbb5466d53619c1c50cce1b69ba2a Author: Alan Garny Date: Mon Jun 20 15:39:25 2011 +0100 Moved the CellML plugin to the misc folder from the 3rdparty folder. Moved a few resources to plugins. commit b95995759a3dcf4580f5712335dc6bcd18f727c4 Author: Alan Garny Date: Mon Jun 20 15:28:13 2011 +0100 Created a CellML plugin. Need to move it to the misc folder (from the 3rdparty folder) though... commit ae19e057a6f6f3258f2c4a7490474877e78d5a68 Author: Alan Garny Date: Mon Jun 20 15:01:23 2011 +0100 Big commit (argh, not good practice!). Moved everything away from the '\''bare'\'' OpenCOR itself and (termporarily) deleted things or moved them to a plugin. Some cleaning up is to follow though... commit 3aa35cd1e1a385e99b083f92d622455e12820b75 Author: Alan Garny Date: Mon Jun 20 13:16:21 2011 +0100 Had forgotten to update some UI files following the renaming of the CoreUI plugin to Core. commit 971dcd74399494ced64d30dbcd1256d11e5b3646 Author: Alan Garny Date: Mon Jun 20 12:58:23 2011 +0100 Moved CentralWidget to the Core plugin. commit 70461613bc97a9e7737c0c8dc7f0d7c3ad06288c Author: Alan Garny Date: Mon Jun 20 12:44:53 2011 +0100 Moved PluginsWindow to the Core plugin. commit 1f3c6ad4819289162fd7936afa1ce98efdb03371 Author: Alan Garny Date: Mon Jun 20 12:34:18 2011 +0100 Added CheckForUpdatesWindow and PreferencesWindow to the Core plugin. commit 3b9c8d9d88b38f00d9aa238b53c0d50b95a7ead2 Author: Alan Garny Date: Mon Jun 20 12:21:51 2011 +0100 Moved the TabWidget component to the Core plugin. commit 6e230f4081b96822105843ca9952c5135fa2ae1b Author: Alan Garny Date: Mon Jun 20 11:48:51 2011 +0100 Minor cleaning up to the main CMakeLists.txt file. commit d237714bdd5ff22992f2c33b58801f0a8e0d978f Author: Alan Garny Date: Sun Jun 19 18:30:21 2011 +0100 A few more minor updates to the developer documentation. commit 3a7c46b7fd2f517c3c5ea5f0f9362abb6d84edfc Author: Alan Garny Date: Sun Jun 19 18:24:51 2011 +0100 A few minor updates to the documentation. commit 1e414e58ad230105ad07fd4d9c02be2787bf82d9 Author: Alan Garny Date: Sun Jun 19 14:10:26 2011 +0100 Forgot a few things following the renaming of the CoreUI plugin to Core. commit a04bdc8731591096d7a87dd4c3a34ac0d93e09be Author: Alan Garny Date: Sun Jun 19 14:04:35 2011 +0100 Finish renaming the CoreUI plugin to Core. commit 16b738476309724f0871d999cfae243f71c6cf3f Author: Alan Garny Date: Sun Jun 19 14:03:44 2011 +0100 Reverted a previous decision to have both a Core and a CoreUI plugin. The original idea was to have the Core plugin used by both the GUI and console (on Windows) versions of OpenCOR, and the CoreUI plugin only used by the GUI version of OpenCOR. In the end, even if the '\''new'\'' Core plugin contains GUI-related stuff, it can still be used by the (Windows) console version of OpenCOR, so... commit c8d9f736ab3d3c57401f1fb650f578f5de218e2b Author: Alan Garny Date: Sun Jun 19 12:27:01 2011 +0100 Very minor update to the developer documentation. commit 2cd024fa9272d9187f1c35cb08c6df404b863229 Author: Alan Garny Date: Sun Jun 19 12:18:12 2011 +0100 Cleaned up some of our CMake code. commit 96e35991b698ba194b2747910c09df02c653a506 Author: Alan Garny Date: Sun Jun 19 11:56:31 2011 +0100 Include the third-party libraries AFTER having updated the language files. Indeed, if we do that before, then some third-party libraries (e.g. LibQxt) will require translations which is not something we should be worried about. commit 03e16e957722d7829d9395c1294ab0ed4b057ee6 Author: Alan Garny Date: Sun Jun 19 11:50:58 2011 +0100 Updated the developer documentation. commit fd558652b4baa2f8e8cb6fa29e3b540a8e0750b3 Author: Alan Garny Date: Sun Jun 19 11:39:27 2011 +0100 Removed the QxtTemporaryDir dependency from the Help plugin (no need for it in the end, so...). This means that some LibQxt files were also removed. Moved the CMake-related stuff for LibQxt and QtSingleApplication to their respective directories and INCLUDE them in the project'\''s CMakeLists.txt file instead (i.e. cleaner that way). commit 851375b14b023122021e315613c83a40bf8f075d Author: Alan Garny Date: Sun Jun 19 10:33:03 2011 +0100 Removed the CMakeLists.txt file for QtSingleApplication which is not required anymore (but couldn'\''t be directly removed as part of the previous commit). commit 4da03e84f87b4b146e2dd926e8ceb624c454eec9 Author: Alan Garny Date: Sun Jun 19 10:32:11 2011 +0100 Embedding QtSingleApplication to OpenCOR, i.e. we are not making it a plugin anymore or even a shared library. Indeed, the idea is really to embed in OpenCOR everything that is critical to its functioning, as opposed to making those things a plugin. This means that part (all?) of LibQxt will also have to be embedded. commit 58fb54d0174ebddd726b5da070824c92fc2564e7 Author: Alan Garny Date: Thu Jun 16 18:35:55 2011 +0100 Cosmetic update to plugin.cmake. commit 4d1fe3b8dd5098896e2945193a591540cffca699 Author: Alan Garny Date: Thu Jun 16 17:36:03 2011 +0100 Minor update to the View menu which gets its Organise and Edit items enabled/disabled depending on whether they contain any items. commit cef17f73df521c932c457317bc032ee08ea977df Author: Alan Garny Date: Thu Jun 16 14:58:37 2011 +0100 Further cleaning up of CMake files. commit 20f5b6a825fa586ae49189b048c0836e98a953b7 Author: Alan Garny Date: Thu Jun 16 14:01:53 2011 +0100 Some cleaning up in the CMake files. Now copy the OpenCOR-specific plugins in the right folder on Mac OS X. commit b2d1bdfe7601fc4c0cb641482bd682b62ebf944f Author: Alan Garny Date: Thu Jun 16 12:46:04 2011 +0100 Added QShortcut to the include list of src/ui/mainwindow.cpp. I had removed it not realising that it'\''s needed on Mac OS X! commit 22f3c966e35ac09077f2894a8fa2f080f2e5460d Author: Alan Garny Date: Thu Jun 16 12:44:31 2011 +0100 Minor adjustment for Windows after making use of CMAKE_SHARED_LIBRARY_PREFIX in plugin.cmake. commit 3e4e65c64e03a1f4d79662a44796b54616853f35 Author: Alan Garny Date: Thu Jun 16 12:38:48 2011 +0100 Slight modification to plugin.cmake so that OpenCOR can build on Linux. commit 7538ca7fbaae30abd0d255b40dce6375c7a879b4 Author: Alan Garny Date: Wed Jun 15 18:03:56 2011 +0100 Working towards having the plugins in their proper directory, both after building OpenCOR and when packaged. commit d6c33b54b22a622673374246c004f1b8b5dc9d2c Author: Alan Garny Date: Wed Jun 15 16:53:04 2011 +0100 Cleaned up our CMake files. commit cbcaf5cb87d929d40ce339f77a26de0d7811037f Author: Alan Garny Date: Wed Jun 15 16:14:22 2011 +0100 Removed OpenCOR'\''s direct dependency on the Help plugin. commit ddcaa1fe9fbd8cf87c73a35d1f478afccd0fbca5 Author: Alan Garny Date: Wed Jun 15 16:03:08 2011 +0100 Working towards removing OpenCOR'\''s direct dependency on the Help plugin. commit a167cd119512f04815535e6844a5fe4610d1d7c2 Author: Alan Garny Date: Wed Jun 15 14:57:31 2011 +0100 Removed OpenCOR'\''s direct dependency on the QScintilla and QtMmlWidget plugins. commit 166e17b2ae507a42ea6736dedfb988f987eff216 Author: Alan Garny Date: Wed Jun 15 14:15:06 2011 +0100 Removed OpenCOR'\''s direct dependency on the CellMLModelRepository, FileBrowser and FileOrganiser plugins. commit 6ef40be0c230dfbd510ae705a3fbada8df231181 Author: Alan Garny Date: Wed Jun 15 13:58:03 2011 +0100 Removed OpenCOR'\''s direct dependency on the Viewer plugin. commit 5ba22a1173c81dc662de472de7f54725d0c17367 Author: Alan Garny Date: Wed Jun 15 13:31:18 2011 +0100 Updated some UI files following our renaming and moving of plugins (Core to CoreUI). commit ebfd54b0d08012832851c9afd8104e4cf6a9b0ed Author: Alan Garny Date: Wed Jun 15 13:02:13 2011 +0100 Updated the .ts files so that they use a UNIX type of convention for end of lines (as opposed to a Windows convention which caused the file to be '\''modified'\'' every time one would build OpenCOR on Windows). commit 076e67a98641d6407913931729ff049916a2a366 Author: Alan Garny Date: Wed Jun 15 12:07:42 2011 +0100 Renamed the Core plugin to CoreUI, since its contents is really about UI. commit 5ba5056404b1d5eeb8e89da00aff5a4699497476 Author: Alan Garny Date: Wed Jun 15 11:35:55 2011 +0100 Moved the Core and Help plugins to the misc folder. commit fa360381be0800247165ef745cbbf9a06d3fba36 Author: Alan Garny Date: Sat Jun 11 02:31:54 2011 +0100 Minor updates to the developer documentation. commit f0f677c54824c0297b122e91fc7280a3385a58a1 Author: Alan Garny Date: Sat Jun 11 01:58:51 2011 +0100 Moved the various resources where they should be (following our creation of plugins). commit fe64b0d15222e3f4362e840548d032c4f6029a96 Author: Alan Garny Date: Fri Jun 10 21:42:30 2011 +0100 Forgot to update packageproj[.bat]. commit 14b87f11d5380dd9931da6cc6ec02aff3c378902 Author: Alan Garny Date: Fri Jun 10 21:37:37 2011 +0100 Fixed the issue of the two "Help" targets generated by CMake ('\''just'\'' renamed the name of the CMake project for the plugins while ensuring that the generated library has the right name using the OUTPUT_NAME property in SET_TARGET_PROPERTIES). Some minor cleaning up too. commit e63161acad6f39bd6a0ca27766387c024d94c999 Author: Alan Garny Date: Fri Jun 10 21:29:32 2011 +0100 Removed cleanprojall[.bat] since we don'\''t really need them now that the third-party libraries are plugins, and anyway it doesn'\''t that long to compile everything. commit 73bcd96adb8a8753bf69734c4a03ea4f0907d558 Author: Alan Garny Date: Fri Jun 10 20:44:53 2011 +0100 Slight update to the developer'\''s documentation following the conversion of the 3rd party libraries into plugins. commit 600e032fb885e3fda1844cef4835009c9d58a067 Author: Alan Garny Date: Fri Jun 10 20:13:33 2011 +0100 Converted the third-party libraries to plugins. This does indeed not only make sense, but also simplifies our CMake files. commit e872c6dd930b6eaddc24436eebe922ede886c224 Author: Alan Garny Date: Fri Jun 10 19:43:43 2011 +0100 Minor update to the developer'\''s documentation. commit 95d58d1a3e7411876e7fe73817f55d10796069c3 Author: Alan Garny Date: Fri Jun 10 19:35:26 2011 +0100 Minor renaming of the plugins'\'' folder commit dba37c928cadeac7e5cd97c9137b9bbf4b77732d Author: Alan Garny Date: Fri Jun 10 19:22:15 2011 +0100 Minor improvements to the CMakeLists.txt files. commit 3c4703414b5018746d7020a4e266992d9f888c19 Author: Alan Garny Date: Fri Jun 10 17:02:23 2011 +0100 Converted the organiser widgets/windows to plugins. commit efc5d8c0b4262f6298f384606279fb8316fec0e5 Author: Alan Garny Date: Fri Jun 10 15:12:46 2011 +0100 Made the help window and widget into a plugin. Note that it currently results in the following message when building OpenCOR: makefile:1227: warning: overriding commands for target `Help'\'' makefile:257: warning: ignoring old commands for target `Help'\'' This is because the Help plugin is called... well, "Help" and that CMake generates a "help" target, hence conflict... So, this will have to be sorted out somehow. commit db2ad0ff4e452fc82358df82ef0172e435721c7e Author: Alan Garny Date: Fri Jun 10 11:25:51 2011 +0100 Added the skeleton of a plugin class. commit d31fd47321843249856dd2f6a9b673b2466516dd Author: Alan Garny Date: Thu Jun 9 22:07:37 2011 +0100 Argh, the double quotes are apparently important to refer to ${LINK_FLAGS_PROPERTIES} on Mac OS X within common.cmake. (For consistency, we also put them in case of WIN32.) commit 73f656250e3aa888697935f10e96724a511eacae Author: Alan Garny Date: Thu Jun 9 21:59:13 2011 +0100 Another minor update to the filename format of shared libraries / plugins. Indeed, if something like libViewer.XX is not common on Windows, it happens that it is on Linux and Mac OS X, so... commit 7c9d547a0835c43de19297e28b84953f82daea87 Author: Alan Garny Date: Thu Jun 9 14:52:25 2011 +0100 Minor update to the filename format of shared libraries / plugins. It used to be something like libViewer.XX while now it'\''s Viewer.XX (for the Viewer plugin). commit 860c84decb6796a9db8c2a9bfc7d24b202ce9d0c Author: Alan Garny Date: Thu Jun 9 13:54:46 2011 +0100 Fixed a small (but vicious!) issue on Ubuntu which prevented the language file for the Viewer plugin from working. Interestingly enough, everything was fine on Windows and Mac OS X. In the end, and thanks to a Qt developer (http://lists.qt.nokia.com/pipermail/qt-interest/2010-December/029558.html), it was just an issue with the .qrc filename being the same for OpenCOR itself and the Viewer plugin (i.e. ui.qrc). To rename one of the two (that of the Viewer plugin in our case) fixed the problem on Ubuntu. Crazy, but well... it now works! commit 6b10311c6bddc6d989b4b5c53f68420b5bb907f1 Merge: a7161f4aa a234a0c9a Author: Alan Garny Date: Wed Jun 8 18:06:37 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit a7161f4aa5a9f6fca3fb24b818e7a4bfa30b7089 Author: Alan Garny Date: Wed Jun 8 17:55:30 2011 +0100 Minor editing of comments. commit a234a0c9ae69b74b59733fb0cddd1337027c4a78 Author: Alan Garny Date: Wed Jun 8 17:55:30 2011 +0100 Minor editing of comments. commit e4ad0a9a6aa4d07dc54d9a37b10bcda41efd54fb Author: Alan Garny Date: Wed Jun 8 17:52:13 2011 +0100 Some minor cleaning up. commit c76850e136bee64351c39b048f37dc8dbc5e3f45 Author: Alan Garny Date: Wed Jun 8 17:34:14 2011 +0100 Oops, when the language files are updated for OpenCOR itself is important. Indeed, we need an icon for OpenCOR which means that we eventually update SOURCES which causes problem with lupdate. commit 9982083081b975e559c6b52ae9c2402412611965 Author: Alan Garny Date: Wed Jun 8 17:23:08 2011 +0100 Some cleaning up in the CMake code for plugins. Also improved the CMake code for third-party libraries. commit bf0409d48b1045f94fb6d34f341c4d9de02ffd4f Author: Alan Garny Date: Wed Jun 8 16:47:04 2011 +0100 Minor cleaning up while trying to understand why the internationalisation of the Viewer plugin doesn'\''t work on Linux (while it works perfectly fine on Windows). commit 7cbb374e110df50123dad7aaa1267e20266a6688 Author: Alan Garny Date: Wed Jun 8 16:20:51 2011 +0100 Forogot to finish the documentation on internationalisation in the context of a plugin. commit 4e0524dd3ca0d3d3b643eb7bbf6e63a9aadec306 Author: Alan Garny Date: Wed Jun 8 16:10:13 2011 +0100 Added support for internationalisation in the plugins and improved our CMake code in the process. commit e49cc002c49a865be3b07530d4b8f6fa3ecaef73 Author: Alan Garny Date: Wed Jun 8 10:28:29 2011 +0100 Slight update to the developer documentation. Also, slight update to our common.cmake file. commit 15038f40df7ca1c400da1a2be9914ddbae1acb3a Author: Alan Garny Date: Tue Jun 7 17:52:23 2011 +0100 Started work on issue #11 (support for plugins) by moving some code to a '\''pure'\'' shared library which will eventually become a '\''proper'\'' plugin. commit a1dece4f4d6e6974ed66ee137a0c64c2c64e6e8b Author: Alan Garny Date: Tue Jun 7 15:46:38 2011 +0100 Added a menu item and window for plugins management. commit 19e3a199b4bbe2588aaa6948df20a76ce161ec28 Author: Alan Garny Date: Tue Jun 7 14:38:01 2011 +0100 Created a new macro for packaging third-party libraries. commit 73689d592106d8593ce10b075721b2a08eb3545b Author: Alan Garny Date: Tue Jun 7 14:33:20 2011 +0100 Very minor cleaning up. commit e8cb94ab94f7f48ff60f89bd8ed3d910715e57fc Author: Alan Garny Date: Tue Jun 7 14:32:12 2011 +0100 Some more work on the initialisation macro. commit a24ec1b7580471c0ac9b6b285f5c5bd52afb9c6e Author: Alan Garny Date: Tue Jun 7 14:15:28 2011 +0100 Some cleaning up. commit 0baa18d5bebccb0d4ce77a5155d33cb5560100d9 Author: Alan Garny Date: Tue Jun 7 14:08:27 2011 +0100 Further work on the initialisation macro. commit e49e24c214e4fb0186729b3e44d3cfd16a37618d Author: Alan Garny Date: Tue Jun 7 13:29:51 2011 +0100 Created an initialisation macro for our two main CMakeLists.txt files. This allows to set up things that are common to our various CMakeLists.txt files. commit 94096ab249af17de3cc3c9f1f38fd1ce247560cf Author: Alan Garny Date: Mon Jun 6 17:32:25 2011 +0100 Updated the internationalisation documentation. commit 4cd4ca38eae2d508e991528782762e3d2d8a4132 Author: Alan Garny Date: Mon Jun 6 16:25:31 2011 +0100 Renamed gui.qrc to ui.qrc (more consistent with the rest) and updated our .ui files to point to ui.qrc (rather than the '\''old'\'' OpenCOR.qrc). Added some initial documentation about internationalisation in OpenCOR. commit 2830ed0dccff89490f30ababcf88caf782982dc1 Author: Alan Garny Date: Mon Jun 6 15:40:33 2011 +0100 Oops, forgot to add a couple of files! commit f14345a7c96595d1f30649069497e225daade631 Merge: 40b12a276 d6c458f54 Author: Alan Garny Date: Mon Jun 6 15:38:53 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 40b12a276422bbacea40bcf1bec7f929c4dedb34 Author: Alan Garny Date: Mon Jun 6 14:57:07 2011 +0100 Improved the sharing of code between the Windows console version and the main version. commit 63af6c8e340c3f37e6fb07f70d786567f3e28fa7 Author: Alan Garny Date: Mon Jun 6 14:52:23 2011 +0100 Updated the version of qt_fr.qm to that of the latest Qt version (i.e. 4.7.3). commit d6c458f54e99d8e850c7b3fc6fd576e0ce1da3b8 Author: Alan Garny Date: Sat Jun 4 18:12:08 2011 +0100 Aesthetic changes. commit 49d94dfbccd07ae5cde1a11cf93b96d8c58ffe87 Author: Alan Garny Date: Sat Jun 4 01:56:52 2011 +0100 Cleaned up some more code and made some code common to the command line and GUI versions of OpenCOR. commit eb46c3749f69c58273f78efc1cc912b8fb8ae8f7 Author: Alan Garny Date: Sat Jun 4 00:49:03 2011 +0100 Some cleaning up in the CMakeLists.txt files. commit 5d5f91e3170ff5df09014ea58e0633686ff11016 Author: Alan Garny Date: Fri Jun 3 12:10:51 2011 +0100 Some reorganising of files. commit 4d12668ca17dc61345ea586dfa8074c2953c517a Author: Alan Garny Date: Fri Jun 3 12:06:57 2011 +0100 Reorganised the file structure a bit to account for the fact that, as much as possible, OpenCOR'\''s features are available through plugins. commit 5b1fcae0e0fcef4ffc8628c6d3a0995892ac2820 Author: Alan Garny Date: Wed May 18 16:09:02 2011 +0100 Some simple cleaning up. commit 4851480377de7cd1f68ad8e268c4007dc76fcbcc Author: Alan Garny Date: Wed May 18 15:41:04 2011 +0100 Some simple cleaning up. commit be9690782239f7a7cee8f0077240194d3d5d6db4 Author: Alan Garny Date: Wed May 18 14:40:33 2011 +0100 Added the skeleton of a plugin manager. commit a2e90f47abb1347e1926c8cfb78bf3df4277ccfd Author: Alan Garny Date: Wed May 18 13:36:02 2011 +0100 Yet another renaming of UpdatesManager to VersionManager, since we don'\''t only want to update, but revert to an older version if necessary (see issue #37). commit 4ba8d55f9dafc4c912808ac59453f5e98290aa6f Author: Alan Garny Date: Tue May 17 13:50:12 2011 +0100 Oops, simple renaming of our updateS manager. commit 10f657f5770f02e303cc7690c2ac25b17c3fbb72 Author: Alan Garny Date: Tue May 17 13:46:17 2011 +0100 Added the skeleton of our update manager class. commit 6a9cd27d201509b699e072b0fabb4caab7776176 Author: Alan Garny Date: Mon May 16 18:24:50 2011 +0100 Oops, silly oversight! commit 3e3fa01f5c37fb0ebc8baf601b4685f076f7cbe7 Author: Alan Garny Date: Mon May 16 14:54:17 2011 +0100 Some cleaning up. commit 99641e71aa5ca6d2b5f56c25847efe94613f94dc Author: Alan Garny Date: Mon May 16 13:43:21 2011 +0100 Determine the application bit version (i.e. 32-bit or 64-bit). Also determine the type of OS (i.e. Windows, Linux or Mac OS X). Some cleaning up. commit 10fcdc2e55b66c28dc6970bbd94dee2819abbf29 Author: Alan Garny Date: Sun May 8 15:05:24 2011 +0100 Renamed the UpdateWindow class to CheckForUpdatesWindow. This means that there would most likely be no need for using a namespace anymore, but still it doesn'\''t harm using one, so... commit f68577ed6263d72b8a4d19885e8a2cd4d252690e Author: Alan Garny Date: Sun May 8 14:59:28 2011 +0100 Getting ready (with regards to translations) for when PreferencesWindow and UpdateWindow get some contents that needs translating. commit c1b75925b2b98f066c9de5fa76c878b23c8949d9 Author: Alan Garny Date: Sun May 8 14:18:34 2011 +0100 Added a (n empty) preferences window. commit ac79b9daf24c2eabf2744cf11c3c84eb353ae7f8 Author: Alan Garny Date: Sun May 8 12:31:37 2011 +0100 Make use of the OpenCOR namespace throughout the project. commit 1315a8b8a2b698d288b06340bc5471b3ce731a48 Author: Alan Garny Date: Sun May 8 11:36:51 2011 +0100 Make a simple call to our (empty) update window from the "Check for Updates" menu in the main window. Note that this required using a namespace since UpdateWindow is indeed used by at least Windows, so there was a conflict of name. Talking of the namespace, we created one called OpenCOR (yes, it doesn'\''t respect our name convention -- it ought to be Opencor, if anything -- but that will have to be our exception that confirms the rule). The use of that namespace now needs to be extended to the rest of the project. This is, actually, something I meant to do for some time, but thought I would delay it until it actually proved useful/necessary. Well, that time has now come! commit 34ac5a82870388f113f69ad3c8451b9c03f2c990 Author: Alan Garny Date: Sun May 8 03:06:46 2011 +0100 Aesthetic update to UpdateWindow. commit 6c1d4ebcaf9d8b0ce0580746f81f79314356012e Author: Alan Garny Date: Sun May 8 03:06:25 2011 +0100 Moved CommonWidget from src/widget/misc to src/widget. Slight update to the developer documentation as a result of that move. commit a6fe33f49b409de15be5a51c676516fb56a5ffd3 Author: Alan Garny Date: Sat May 7 18:21:13 2011 +0100 Renamed an action in the main window. commit f5c02400705c5e3f80d965b46025e0c10b9ef56c Author: Alan Garny Date: Sat May 7 18:18:26 2011 +0100 Some minor updates to the main menu. Also added a new (blank and unused at this stage) window for the update feature. commit 92c545d165cc169d07ca6d4292fe242d923296bd Author: Alan Garny Date: Sat May 7 16:15:37 2011 +0100 Slight improvement to the opening of files from the open dialog box. commit 78d610022c0c5d81f25737c59b10c4d6fc9541e4 Author: Alan Garny Date: Sat May 7 10:08:05 2011 +0100 Minor updates to the documentation. commit cf887facbc35a57f56f2337140fda7a114c0e6b3 Author: Alan Garny Date: Fri May 6 19:23:33 2011 +0100 Keep track of the last used directory when calling opening files using the file dialog box. It doesn'\''t, however, address the case where the user goes to a particular directory and closes the file dialog box without selecting a file. In fact, I am not sure it can be done. I am waiting to hear from the Qt community on this. commit 67ad9a9b34a5d3dcb9c1c72b994f42cbbe769f23 Author: Alan Garny Date: Fri May 6 13:57:56 2011 +0100 Implemented the opening of files from the menu and toolbar. commit 378865304bba2fd4846053f13dabf72482213260 Author: Alan Garny Date: Fri May 6 12:16:58 2011 +0100 Slight update to the developer documentation following the release of Qt Creator 2.2.0. commit 987f5f8629817716b201739abc530c017868cc52 Author: Alan Garny Date: Thu May 5 17:40:55 2011 +0100 The previous commit was merely to keep track of changes that might become definitive at some point. Indeed, Qt SDK 1.1 is a no-go at this stage, since it contains issues that prevent us from building/packaging OpenCOR on Windows and Mac OS X. So, we are back to installing Qt 4.7.3 and Qt Creator 2.1.0 individually. commit 7d74d1b8eb605f52c5172dc54c6cdc2f7933b684 Author: Alan Garny Date: Thu May 5 12:58:59 2011 +0100 Updated the developer documentation following the release of Qt SDK 1.1. Also corrected a few links that were still pointing to SourceForge, despite our move to GitHub. Some minor aesthetic changes. commit 39fde29b8035b5ad7e719950499f7815ad539382 Author: Alan Garny Date: Wed May 4 16:55:00 2011 +0100 Updated our Linux packaging as a result of upgrading to Ubuntu 11.04. Indeed, to package on Ubuntu 11.04 and then deploy on Ubuntu 10.04 (which we want to support since it'\''s the current LTS) requires the right version of libstdc++.so.6 to be used. commit 28943b39d2bf9ec5bbb63149023e4c2bb2bf6226 Author: Alan Garny Date: Wed May 4 12:58:53 2011 +0100 The audio and phonon libraries are not required anymore for Linux (probably as a result of my changing the Qt requirements in OpenCOR at some point). commit dda7f4b43cbb6369b3c6eba8879a1305bfd7b8ad Author: Alan Garny Date: Wed May 4 12:20:54 2011 +0100 Slight improvement to the Shell script used to run a deployed version of OpenCOR (this was prompted from a deployed folder containing a space in its name). commit a9e0f8a151ba6db69ed411c596837c58ff41c7b3 Author: Alan Garny Date: Wed May 4 12:00:11 2011 +0100 Some cleaning up of the main CMakeLists.txt file, as well as improved the packaging on Linux (this was prompted by the fact that Ubuntu 11.04 uses a different version of phonon than on Ubuntu 10.10). commit a40f4ea4367267db34166b3484db030f6750b75f Author: Alan Garny Date: Tue May 3 21:58:11 2011 +0100 Some further cleaning up following the removal of the CellML DOM API 1.9 RC1 binaries. commit 06fef80ce4a56d32820cb43654737673f47b8871 Author: Alan Garny Date: Tue May 3 21:54:01 2011 +0100 Removed version 1.9 RC1 of the CellML DOM API binaries, since it won'\''t be possible to fully integrate version 1.9 in OpenCOR (see https://tracker.physiomeproject.org/show_bug.cgi?id=2787). commit 14f7785bb1ffdf5a13b567cc914c6b6e3567c2bf Author: Alan Garny Date: Mon May 2 15:29:16 2011 +0100 Updated the readme file. commit 904d05fdc9bfc93415bc1409a609edd06c9f05e4 Author: Alan Garny Date: Sun May 1 13:58:30 2011 +0100 Started integrating the pre-compiled CellML DOM API to OpenCOR. commit c27d63428bab109bca70892b71e0d31cfd4a0539 Author: Alan Garny Date: Sun May 1 12:05:14 2011 +0100 Slight update to the developer documentation. commit 5ce8b0b4dcbab07ea7c7ab7112b239c2465bb614 Author: Alan Garny Date: Sat Apr 30 23:45:51 2011 +0100 Simple renaming of variables in the various CMakeLists.txt files. commit 36c713949f49f1f2bf925f0e224d7d034a290652 Author: Alan Garny Date: Sat Apr 30 22:36:16 2011 +0100 Minor comment update to 3rd party CMakeLists.txt files. commit 487bfb171cd75bb88e2fb60aefc95d90b358ce54 Author: Alan Garny Date: Sat Apr 30 15:43:35 2011 +0100 Minor update to the user documentation. commit 7d1d6e209133afbecaaa31a6789be1939fd7f350 Author: Alan Garny Date: Sat Apr 30 10:43:14 2011 +0100 Updated the documentation, mainly to reflect our upgrade to Ubuntu 11.04 (Natty Narwhal) from Ubuntu 10.10 (Maverick Meerkat). commit 016528c3db10f0292d5c7e8fcb7a32713d8ea5c0 Author: Alan Garny Date: Fri Apr 29 15:38:07 2011 +0100 Updated the Oxygen icons to version 4.6.2 (from version 4.6.1). commit f9de9c73cd32fcbb02308588304ee18450a9dbe9 Author: Alan Garny Date: Thu Apr 28 20:32:44 2011 +0100 Update QScintilla to version 2.5.1 (from version 2.5.0). Minor updates to the developer documentation. commit 1f81c106db7ea2b36314bc9fbdadb5c217d8acb1 Author: Alan Garny Date: Thu Apr 28 20:05:02 2011 +0100 Minor update to the developer documentation. commit b4ddf2b7b4c32d6c8c9fe0899e2a38924bcc17cf Author: Alan Garny Date: Thu Apr 28 20:02:58 2011 +0100 Renamed the CellmlApi directory to CellmlDomApi (better name for what it is). commit c5d9ff3583237b2c096e0fc77cee716ae63b2616 Author: Alan Garny Date: Thu Apr 28 19:56:37 2011 +0100 Updated the developer documentation (following the addition of the CellML DOM API). commit 9e26fdeb77d088987f2827a6cd111cb1c6bac554 Author: Alan Garny Date: Thu Apr 28 19:43:22 2011 +0100 (Simply) added the CellML API binaries. commit 7c8a5b2dcf285e7b573441a9841d8934320158cc Merge: a27fed5ef 23dc1f86f Author: Alan Garny Date: Thu Apr 28 19:05:48 2011 +0100 Merge branch '\''master'\'' of github.com:opencor/opencor commit 23dc1f86fff8582ed8537064ade38ebf8c22f172 Author: Alan Garny Date: Thu Apr 28 18:37:01 2011 +0100 Addressed the issue of Cmd+M not working on Mac OS X. Closes issue #9. commit a27fed5ef368a83afe6252ae5d37f04ce92ee9e6 Author: Alan Garny Date: Thu Apr 28 17:44:55 2011 +0100 Reset OpenCOR'\''s version to 0.0.0. commit 4671ce0062b09890469d26f04fb2d085ea944d99 Author: Alan Garny Date: Thu Apr 28 15:58:25 2011 +0100 Updated the different style sheets for the documentation. Also updated the help widget error HTML file (I had completely forgot about it!). commit 07efaa8692a74efcf2279e50d186bc2bfc1d942d Author: Alan Garny Date: Thu Apr 28 15:38:01 2011 +0100 Minor update to the developer documentation. commit a055deafc5379b68d1c2e00e5ada0ea7f6d5a122 Author: Alan Garny Date: Thu Apr 28 11:11:29 2011 +0100 Minor update to the developer documentation. commit 2cf0aaea87c77447958527cc62518074f25c1923 Author: Alan Garny Date: Wed Apr 27 16:57:13 2011 +0100 Slight updates to the user and developer documentations. commit a651b5f8f2643c7ca057774a00223d0e348311fa Author: Alan Garny Date: Wed Apr 27 14:52:27 2011 +0100 Updated the documentation following our move from SourceForge to GitHub (which is MUCH better!). commit 4a2500fbf56b9216112b9f06f231baf4d7ba447d Author: Alan Garny Date: Tue Apr 26 10:13:49 2011 +0100 Cosmethic change. commit 9405d204423d4ff370e1044455faf3b22169494e Author: Alan Garny Date: Tue Apr 26 10:05:47 2011 +0100 Fixed issue #11 -- Deleted files don'\''t show up as such in the file organiser widget when starting OpenCOR. commit 54d1578e6d730b630707da9c961ea46da95480e1 Author: Alan Garny Date: Tue Apr 26 10:04:56 2011 +0100 Made the tabs in the central widget movable. commit 14f5a9fd1c416bc8e468127a30c2cc0c3f42ccef Author: Alan Garny Date: Sun Apr 24 00:36:56 2011 +0100 Updated the two CellML files that are distributed as examples. Mainly did that, so that I could change their write access from 644 to 444. commit 7572b76169538a16c0a45606213a81a010db58bc Author: Alan Garny Date: Fri Apr 22 18:04:49 2011 +0100 Limit the number of recently opened files shown in our menus, and from what I can tell this finishes our work on the list of recently opened files! commit 3809768602b03042e482a5979d8a3833b3b26f0b Author: Alan Garny Date: Fri Apr 22 17:56:13 2011 +0100 Now keep track and retrieve our list of recently opened files. commit d173fbfa4a71f74eb1f85d3ab72c03e21730b6e5 Author: Alan Garny Date: Fri Apr 22 17:26:36 2011 +0100 Improved our implementation of our list of recently opened files. commit 059c1001d757401054cc4c4747f215d17e8c56a8 Author: Alan Garny Date: Fri Apr 22 17:16:45 2011 +0100 Some more work towards the list of recently opened files. commit 09f13e7b954f918c07de285abbc748ee73704a6a Author: Alan Garny Date: Fri Apr 22 16:57:46 2011 +0100 Still working towards the recently opened files. Now update the main window title with the name of the currently active file, if any. commit f83efca20b51f645af279b40c68541943fbcb2da Author: Alan Garny Date: Fri Apr 22 15:58:31 2011 +0100 Still working towards the list of recently opened files. commit bc770f3a1691d46fc76379d4013ff80972aa6ae0 Author: Alan Garny Date: Fri Apr 22 15:56:22 2011 +0100 Fixed a small problem with our central widget (we didn'\''t keep track of the name of a file using its native format). commit 39c86d170d07340093696959d2a44c7a7708d923 Author: Alan Garny Date: Fri Apr 22 14:17:10 2011 +0100 Oops, mninor mistake. commit 0f05b38c3cd1f263ef3d28727456954e0c0aaca4 Author: Alan Garny Date: Fri Apr 22 14:15:40 2011 +0100 Working towards implementing a list of recently opened files. commit 3e50f176d0340c1a79964930871f94116e8986b8 Author: Alan Garny Date: Fri Apr 22 09:06:52 2011 +0100 Done with renaming DocumentManager to FileManager. commit d31b7d14ff44a3a352efa87c0c3a39b587e52118 Author: Alan Garny Date: Fri Apr 22 09:00:18 2011 +0100 Started work on renaming DocumentManager to FileManager (still need to be completed). commit 785e91f898e389a39b67f7d0fe796ac1ead5d7c0 Author: Alan Garny Date: Thu Apr 21 19:32:19 2011 +0100 Moved our main document manager from MainWindow to CentralWidget, since everything is actually done there (e.g. open/close files). Fixed a small problem in the loading of the CentralWidget'\''s settings. commit 697adc467d0288fae97c9ce1efb1efb9623a5709 Author: Alan Garny Date: Thu Apr 21 18:41:42 2011 +0100 Reworked some code related to our central widget. Also completed the work on keeping track of opened files. commit e36ffe09ba7f21ae58bf7a4314a525baf3faff25 Author: Alan Garny Date: Thu Apr 21 16:12:20 2011 +0100 Working towards keeping track of opened files. commit 1711b4066877ffe2bdf4527262fdef69a89c66e2 Author: Alan Garny Date: Thu Apr 21 09:01:37 2011 +0100 Slight improvement to the file browser widget when it comes to selecting several entries and needing to deselect folders. commit 79b355e785e5a0b4f34f4a6a27fd5a7546294a71 Author: Alan Garny Date: Wed Apr 20 17:51:48 2011 +0100 Added a timer to our document manager so that it can regularly check the status of the documents it monitors. Made use of our document manager to display the right file icon (i.e. existing file or non-existing file) within our file organiser widget. commit 8c911118048c8ebda172af88db9e55359072c31a Author: Alan Garny Date: Wed Apr 20 17:24:48 2011 +0100 Added a new icon to show that a file has been deleted. commit aa86fb7cf00dc8ef0f93f9c7a05478ddb9ff3a90 Author: Alan Garny Date: Wed Apr 20 17:03:02 2011 +0100 Some cleaning up. commit 678800de52ffb5d0f679ec9e5346c41ae9052cff Author: Alan Garny Date: Wed Apr 20 16:48:51 2011 +0100 Our document manager class can now check the new status of a document. commit eeb71a0f4f9b54a2a1c08229883920421fa626b0 Author: Alan Garny Date: Wed Apr 20 16:22:56 2011 +0100 Can now compute the SHA1 value of file in the document manager. commit c58eb255c6b1372ce6076493d29e4f5135b4c7bd Author: Alan Garny Date: Wed Apr 20 13:26:21 2011 +0100 Started work on taking advantage of our document manager (which still needs further work itself) within our file organiser widget, so that we can show the user whether a file is still physically present or not. commit 3f16459d6d3f7054d00e368530a348416ccba9df Author: Alan Garny Date: Wed Apr 20 11:35:31 2011 +0100 Keep track / restore the expanded state of an item. This is used when moving items around within the file organiser widget. Indeed, the way we currently move an item (i.e. using takeRow and insertRow/appendRow) doesn'\''t keep track of the expanded state of folder items, so... commit b0d6a1ed0937cf28ea7c3e6d6aecf7192220629e Author: Alan Garny Date: Wed Apr 20 10:12:25 2011 +0100 Fixed the issue of moving several items around within the file organiser widget (we were relying on the index of those items while we should have relied on the items themselves). commit b1736844b59893e5f34d356ed069644b31e88717 Author: Alan Garny Date: Tue Apr 19 17:57:01 2011 +0100 Minor comment change. commit 5d17ee4b4f3df90aa047a8a85a4b17720186a2fd Author: Alan Garny Date: Tue Apr 19 17:45:46 2011 +0100 Fixed a problem which occurred when trying to move an item within its location (in the file organiser widget). commit 5e3e076b89cfdfb439270db703e1a0d817a905ae Author: Alan Garny Date: Tue Apr 19 17:38:40 2011 +0100 Improved the drag and drop feature for the file organiser widget (one could drop an item on one of its children!). commit f5e6900929eecf8fbc75ed81a19af6d873e2d39a Author: Alan Garny Date: Tue Apr 19 16:17:32 2011 +0100 Addressed the issue of a moved (file) item already present at the destination (drag and drop an item from and to our file organiser widget). commit 1ce3f681ed1aab93a8c8b315c4c4e4e95a0e95e5 Author: Alan Garny Date: Tue Apr 19 15:09:28 2011 +0100 First go at allowing the moving around of items in the file organiser widget. This seems to be working pretty well, even though there is moved folders end up collapsed. Also, we don'\''t currently check that a file item is already present at the destination. commit 54642e4fe5cb578147f424845a6ce9d11fc16262 Author: Alan Garny Date: Tue Apr 19 13:39:39 2011 +0100 Added some code to clean a list of indexes to be moved around within the file organiser widget (as a result of a drag and drop operation). commit d1f92691e6586177c8b3f0020a4a7c1d29f84b00 Author: Alan Garny Date: Tue Apr 19 12:47:17 2011 +0100 Simple refactoring. commit 486a31f795fc47fa8afe590362d6c246d1fdf03a Author: Alan Garny Date: Tue Apr 19 12:16:13 2011 +0100 Slight improvement to encode/decdode of mime data for the file organiser widget. Some minor cleaning up. Allow the dragging of objects only above/on/below certain items within FileOrganiserWidget::dragMoveEvent. commit 8047f550b6ba3efc33288624bc04a1705c0d4593 Author: Alan Garny Date: Tue Apr 19 11:12:57 2011 +0100 Keep track of the currently selected item in the file organiser widget. commit 1010ba1f64a1da0ec0bcc8a80c7c1ca7e0878919 Author: Alan Garny Date: Tue Apr 19 09:57:11 2011 +0100 Some simple refactoring in the perspective of keeping track of the selected item in the file organiser widget. commit 44acc6b03bc019a87abd12477ff842a81e6a1be2 Author: Alan Garny Date: Mon Apr 18 17:43:32 2011 +0100 Simplified the encoding of the mime data for our file organiser widget, since what we want is to be able to retrieve the QModelIndex values of the dragged items, not the information they hold. Implemented the decoding of the mime data. commit 7141fd7a5d6c54592d5bf5768531a003304465e0 Author: Alan Garny Date: Mon Apr 18 16:46:35 2011 +0100 Done (I think!) with the encoding of the mime data for the file organiser widget. commit 2d9819d15ec0580e8edb870ad0a96d6a7b8d7bd8 Author: Alan Garny Date: Mon Apr 18 09:42:25 2011 +0100 Moved a comment. commit d3a2251d9c292dbbc7f519a81bceb2de9897b5b9 Author: Alan Garny Date: Sun Apr 17 17:50:03 2011 +0100 Improved the deselection of folders (I had forgotten to reimplement mousePressEvent!). commit b231bcf5dd6644d6ca10795375fadc470d6ae081 Author: Alan Garny Date: Sun Apr 17 11:13:38 2011 +0100 Ok, ping pong game here! The last code did indeed make things faster on Windows, but it didn'\''t make any difference on Linux and Mac OS X (the previous code was already fast!). So, thanks Windows for that! Also, for some reason, the new code didn'\''t allow for the file browser widget to scroll '\''properly'\'' when selecting items using the mouse. Bottom line, the old code is not that bad in terms of performance (on Windows), so reverted to it! commit e97e1df61739725ae9d5671ba67ef10eb53b2ac5 Author: Alan Garny Date: Sun Apr 17 10:48:57 2011 +0100 Greatly improved the speed (on Windows at least) of the last committed code (which was about deselecting any folder item in the file browser widget whenever more than one item was selected, since we didn'\''t want to give the impression that we could '\''open'\'' or drag folders). commit 96cbcf360bd5332eddc07e070a531f88ab5f5f21 Author: Alan Garny Date: Sun Apr 17 09:46:20 2011 +0100 Deselect any folder item in the file browser widget whenever more than one item is selected, since we don'\''t want to give the impression that we can '\''open'\'' or drag folders. commit 94eb6c4fe6288004324cb72d09bdbd702aa490e6 Author: Alan Garny Date: Sun Apr 17 09:08:58 2011 +0100 Some cleaning up. commit 5aceada23233eb264cf08e697ab67bc72cd788fd Author: Alan Garny Date: Sat Apr 16 23:29:53 2011 +0100 Minor cleaning up. commit 08e5c14c877666b34c14bf10a507384f18af0572 Author: Alan Garny Date: Sat Apr 16 20:15:52 2011 +0100 Modified the file browser widget by having its model'\''s flags method reimplemented rather than its mimeData method. Indeed, it'\''s better to make a folder not draggable than removing a folder from a list of dragged objects. commit 053dc2e70d57d7f2d432c225ad701dd47b909a74 Author: Alan Garny Date: Sat Apr 16 18:11:42 2011 +0100 Some simple refactoring. commit c48a0478f927d9d0d88656ec707fac3e1ab4c92f Author: Alan Garny Date: Sat Apr 16 16:48:26 2011 +0100 Working towards moving items around within the file organiser widget. commit 1620666ccf489796a75972b01e85a0cea7c993ef Author: Alan Garny Date: Sat Apr 16 10:25:17 2011 +0100 Removed references to SBML. Though we definitely want to support SBML at some point, it'\''s not going to be done in the immediate future (CellML first!). So... commit 3789364fb7cc51336d46d6ba55ba917b94b48e9a Author: Alan Garny Date: Sat Apr 16 08:51:12 2011 +0100 Resized the size of our presentation at the CellML 2011 Workshop (I had forgotten to resize it in the first place!). commit 09171d3bc6e96b1a49c85b02dd579b1589227990 Author: Alan Garny Date: Fri Apr 15 17:48:08 2011 +0100 Fixed a problem that got introduced at some point and which was related to the collapsing of empty folders following the deletion of items in the file organiser widget. Fixed a bug in Qt (?) which didn'\''t make the drop indicator disappear upon dropping. Can now drop external objects anywhere on our file organiser widget (i.e. above/on/below a folder, above/below a file or on the invisible root folder). commit 61c0d80e6f5233a766ef43cdf3b34563b0743332 Author: Alan Garny Date: Fri Apr 15 14:14:35 2011 +0100 Made it possible to see the drop indicator for external objects being dragged on our file organiser widget. commit cb75307d76c5c74c388fe6a36a77f6a06555d56d Author: Alan Garny Date: Fri Apr 15 12:03:41 2011 +0100 - Now check that there are effectively objects to drop on the file organiser widget. Indeed, the user might perfectly be trying to drag and drop folders (and no file) from our file browser widget onto our file organiser widget. If so, then this shouldn'\''t be allowed, since there is effectively nothing to drop. commit a1a40a38970b102a9930e2e9805a97e4bc16dcc5 Author: Alan Garny Date: Fri Apr 15 12:02:36 2011 +0100 Minor cleaning up. commit 7d27deaa0b78ede1fe90790198fb1c306cf56a27 Author: Alan Garny Date: Thu Apr 14 18:45:42 2011 +0100 Have our own QFileSystemModel-based model for our file browser widget. The idea of that QFileSystemModel-based model is to have its mime data not containing any folder. So, we can '\''select'\'' folders, but can'\''t drag them. commit 62934632241e12b2bb6af2e0638a664a91e6a725 Author: Alan Garny Date: Thu Apr 14 17:44:35 2011 +0100 Worked some more on our file organiser widget, so that it can handle drag n drop properly. commit 6b072195861a1d80accf64e1394d4c5640a5d5a3 Author: Alan Garny Date: Thu Apr 14 17:41:40 2011 +0100 Added a comment. commit 007f9ce591f287025a3643200f7dde8369eda27c Author: Alan Garny Date: Thu Apr 14 15:31:03 2011 +0100 Reminder to myself about the restart solution. commit eb339593696b27ae01fe56adf83893c563664426 Author: Alan Garny Date: Thu Apr 14 13:33:24 2011 +0100 Reformatting of code. commit f3b4812c420690059784e5d0e010983fefe10a7c Author: Alan Garny Date: Thu Apr 14 10:59:24 2011 +0100 I thought it would be a good thing for folders not to be selectable in the file browser widget, but in the end it makes it difficult for the user to see that a folder is the currently '\''selected'\'' item. Sure, we don'\''t want to give the impression that you can drag folders, but well... Anyway, we are now re-allowing the selection of folders... commit 338b506daeccd6840edb976c70f585c7c2206457 Author: Alan Garny Date: Wed Apr 13 20:17:44 2011 +0100 Updated the user documentation. commit e7b18d6aaadcbcee65c12db0ff08d0caa172d216 Author: Alan Garny Date: Wed Apr 13 19:54:01 2011 +0100 Updated a comment. commit 12d2867b4582ad87e9f59b3eb23b4e051421eb2b Author: Alan Garny Date: Wed Apr 13 18:22:51 2011 +0100 Fixed a couple of memory leaks in the main procedure. Some cleaning up. commit e9b661734c1c92f058b87d47f3b5de66b75f78e0 Author: Alan Garny Date: Wed Apr 13 18:10:10 2011 +0100 Improved the restart of OpenCOR. Cleaned up some code. commit b1ab7ea685a45e164395bf34e4df22f3eed724e1 Author: Alan Garny Date: Wed Apr 13 17:18:05 2011 +0100 Cosmetic change. commit e96a144cf549e763b1c2e7ef6df42f79ce6297b9 Author: Alan Garny Date: Tue Apr 12 19:59:20 2011 +0100 Minor improvement to the start/restart of OpenCOR on Mac OS X. commit a8ad2b52670e4fd979e0bb2232c84a88fcf8f41f Author: Alan Garny Date: Tue Apr 12 19:22:11 2011 +0100 Some straightforward refactoring. commit 7957f50f67e8cc5df13380e745b74476fbfc4ae8 Author: Alan Garny Date: Tue Apr 12 17:48:48 2011 +0100 Added the CellML Workshop 2011 presentation to the documentation. commit 83a2fe93a608b8a710c98966e9a1d47bef306f1f Merge: 23203ca0d 58b97c5fb Author: Alan Garny Date: Tue Apr 12 14:52:56 2011 +0100 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 23203ca0d7f5128fc44fafa0bdad163bbb840a56 Author: Alan Garny Date: Tue Apr 12 14:52:15 2011 +0100 Improved the resetting of OpenCOR. During a live demo, OpenCOR didn'\''t properly restart on Windows (it was fine on Linux). It was most probably because of my computer'\''s CPU being quite busy at the time. Still, the new solution to the resetting of OpenCOR should work no matter what since we restart OpenCOR just before returning the result of the execution of OpenCOR. In other words, we can'\''t do better! commit 58b97c5fb316989302e4975e71aaa24d3394bac4 Author: Alan Garny Date: Mon Apr 11 20:52:16 2011 +0100 Minor update to the developer documentation. commit 9f6ec8463d48b94d6de1303b414610d033d5b243 Author: Alan Garny Date: Mon Apr 11 16:42:50 2011 +0100 Minor update to the developer documentation. commit bb48946ee4df6fb6007a50fb7ad40ca9c2992b6a Author: Alan Garny Date: Mon Apr 11 16:11:03 2011 +0100 Minor update to the developer documentation. commit c730a6950a7f06e7f0eccc53c7b7ab254c384c81 Author: Alan Garny Date: Mon Apr 11 12:36:08 2011 +0100 Minor update to the developer documentation. commit 6f0bce1dd35a12e2f6e43288d3c65dcecce5d194 Author: Alan Garny Date: Fri Apr 8 19:31:12 2011 +0100 Added a comment. commit d3fed4542c7bf4f31e215d6bd2e6d37619056c58 Author: Alan Garny Date: Fri Apr 8 18:31:18 2011 +0100 Just committing some code which needs refactoring, but at least there is a trace of it. commit d4a655fe9b62d430def8bca8d6dcb5a18369f3e1 Author: Alan Garny Date: Fri Apr 8 16:24:19 2011 +0100 Actually, some File actions (in the main window) ought to always be enabled. commit c46dea396a253d4adb0cf0191c285979f5edffa6 Author: Alan Garny Date: Fri Apr 8 16:22:58 2011 +0100 Updated the enabled state of the various actions in the main window. commit 5a2cfa0bba7f9adcd36d13d66ba52025be9ec83e Author: Alan Garny Date: Fri Apr 8 16:14:56 2011 +0100 Some cleaning up and some further work towards allowing the dragging and dropping of folders/files from within the file organiser widget. commit 5f30796e376caa905bdad3604d4448f64eb27c38 Author: Alan Garny Date: Fri Apr 8 12:39:29 2011 +0100 Some cleaning up. Started work on moving folders/items in the file organiser window. Collapse folders in FileOrganiserWidget after their contents has been removed. commit bfbfd0effc6fdc69b19615b0e02c440b7f5793a7 Author: Alan Garny Date: Fri Apr 8 11:42:05 2011 +0100 Straightforward refactoring. commit db3e54eeebe59534bf100520000d1c1e8b328520 Author: Alan Garny Date: Fri Apr 8 11:38:41 2011 +0100 Updated a comment. commit 0a0acaa180424ffc48b245fc05d02053b254f6ba Author: Alan Garny Date: Fri Apr 8 11:32:13 2011 +0100 Fixed a small issue CentralWidget::closeFile (Oops!!). commit 2c4faf6452e9cf62ffe295e64143137767798e0b Author: Alan Garny Date: Fri Apr 8 10:44:47 2011 +0100 Addressed the issue mentioned in the last commit. commit 1d78b93bcfd264ea12369c87deceb44ba675559f Author: Alan Garny Date: Fri Apr 8 09:16:24 2011 +0100 Improved our tab widget (central widget) by having the editor (tab'\''s widget) getting the focus upon selecting a new tab. There is still the issue of another widget (other than our tab widget) having the focus and then clicking on the active tab. This would, ideally, give the focus to the tab'\''s widget, but it doesn'\''t (unless one clicks on a non-active tab and back). Still looking for a solution for this. commit cb4f6071683fdacdab04193312be78ffaee0ad97 Author: Alan Garny Date: Thu Apr 7 23:58:57 2011 +0100 Tabs in the tab widget (central widget) now distinguish between CellML files and other files (based on the their complete suffix). commit cb612794a4f4d6b685e611f2b92668882b085acf Author: Alan Garny Date: Thu Apr 7 23:15:14 2011 +0100 Improved the file browser widget (as a result of folders not being selectable anymore). commit ddcc74ec57df7801a6762f78d870e3584f658ca7 Author: Alan Garny Date: Thu Apr 7 22:55:34 2011 +0100 Give the focus to the editor when a new file is created or activated. commit 0f6d869b2c071f71f840584d535c2639a9f4ff86 Author: Alan Garny Date: Thu Apr 7 22:41:17 2011 +0100 Make use of a default font family and size (operating system dependent) for the editor. commit 660db21b5679bbe0d392a5c884cea35152f08af0 Author: Alan Garny Date: Thu Apr 7 18:48:13 2011 +0100 Minor improvement to the central widget after having tested things on Mac OS X. commit 11fe998ff1a1683e506203eb59ebc30f8a8a1006 Author: Alan Garny Date: Thu Apr 7 18:36:59 2011 +0100 Have the enabled state of some (working) actions updated whenever required. commit 7d57057691ec01fa6c935bce9e6ab53ebec84a9d Author: Alan Garny Date: Thu Apr 7 17:46:49 2011 +0100 Some cleaning up. Central widget: can close a file in the central widget. Can also activate a file that was already opened. commit 170a07603ed3478a18acc6eda43dc437020319cc Author: Alan Garny Date: Thu Apr 7 15:55:32 2011 +0100 Made the central widget (rather than the main window )the dropping region for dropping files on OpenCOR. This means that, now, it doesn'\''t look like one could drop files on, say, the help window or, worse, the file browser window (which is definitely not something we want!). commit 5f5ba0cd7a30d3c98e3d3d283de89765a87698f8 Author: Alan Garny Date: Thu Apr 7 15:40:18 2011 +0100 Some cleaning up. Allow for files (but not folders) from the file organiser to be dragged and dropped on the main window (this should be the central widget in the future). commit dfe3f530bfdfc495450b20c05374b43c0a64c101 Author: Alan Garny Date: Thu Apr 7 13:48:41 2011 +0100 Support our own mime type for the items in the file organiser widget (this will allow us to accept the dropping of items from the file file organiser on OpenCOR). commit a5980cb6b639913fc48d378501ff8d0089c4b35b Author: Alan Garny Date: Thu Apr 7 12:32:31 2011 +0100 Reimplemented the supportedDropActions method in FileSystemModel to only allow dragged items to be copied to their target. commit 16fd03eaea54b4e35f4c17c581acff505371bb6d Author: Alan Garny Date: Thu Apr 7 12:17:44 2011 +0100 Some minor cleaning up. commit 2977ad96c85afb0d5a86bc360b9e2905e76416c2 Author: Alan Garny Date: Thu Apr 7 11:41:44 2011 +0100 Have our own version of QFileSystemModel which doesn'\''t allow folders to be selected/dragged, only files. commit 415b0714c086e6c9753fda6b961899ca2708b069 Author: Alan Garny Date: Thu Apr 7 10:12:37 2011 +0100 Improved the pixmap associated with the dragging action in TreeView. commit c2dedc5fc715e87a654a53731079aee4f76b9c31 Author: Alan Garny Date: Wed Apr 6 18:06:17 2011 +0100 Improved our new TreeView class. commit e2dea8f817bd4fd95cd0797aca5235d7d9a1c179 Author: Alan Garny Date: Wed Apr 6 17:08:21 2011 +0100 Made FileBrowserWidget to inherit from our new TreeView class. Also made FileBrowserWidget to accept objects from being dragged from it. commit 8c4ccba12f9c83ad029dbe93d8f6cb5e7358f371 Author: Alan Garny Date: Wed Apr 6 17:03:43 2011 +0100 Moved the startDrag code from the FileOrganiserWidget class to the new TreeView class. commit 07312988e50ac0b1024b84df5949eecee2e3871b Author: Alan Garny Date: Wed Apr 6 16:53:10 2011 +0100 Working towards the TreeView class which inherits from QTreeView and CommonWidget, and which will reimplement QAbstractItemView::startDrag. Some cleaning up. commit 1c4d747f84bff6930bd86473e2e8cf59aeebf3e4 Author: Alan Garny Date: Wed Apr 6 15:38:17 2011 +0100 Might have found a way to deal with the dragging action from the file organiser/browser windows. For now, I have implemented something for the file organiser, but we will have to put that in a new QTreeView-based class, so that the file browser window can also take advantage of it. Otherwise, the drag pixmap is not great, but sufficient at this stage (and, most importantly, should work fine on all three platforms). commit 26a549eae997911c7ff53683e79fa419b81bd140 Author: Alan Garny Date: Wed Apr 6 10:44:29 2011 +0100 Slight update to the user documentation. commit 468de5e680b7e9ab4505764e1f09b228a8213ff5 Author: Alan Garny Date: Mon Apr 4 10:02:17 2011 +0100 Decided to give up on having shortcuts in windows other but the main window. At least for now. The idea was to have the same shortcut (e.g. Ctrl+C) for different windows (e.g. the main window and the help window), but it seems to be a bit tricky to implement (even when changing the value of QAction::shortcutContext). Anyway, there are more important things to do for now, so this is something that might revisit at some point... commit decab190bcc676c92ef7f7681086c9f11ca1034b Author: Alan Garny Date: Sun Apr 3 19:08:47 2011 +0100 Updated a couple of shortcuts (for the home page/directory in the help and file browser windows, respectively). Implemented a way to have the same shortcut for different actions (e.g. Ctrl+C) in different widgets (e.g. the main window and the help window). This is not quite satisfactory though (I can'\''t, for example, get the Alt+Home sequence in the help window and the file browser window to work properly). So, this will need refining... maybe using eventFilter? commit 078f0aec9f5b5ddd59087d47637db582b033a107 Author: Alan Garny Date: Sun Apr 3 15:20:59 2011 +0100 Some minor cleaning up in the main CMakeLists.txt file. Also updated the winConsole/CMakeLists.txt file for debug/release versions. commit 305c32b1af32bbe104fdb573b39be31090031225 Author: Alan Garny Date: Sun Apr 3 12:43:11 2011 +0100 Updated QScintilla from version 2.4.6 to version 2.5 (which uses the latest version of Scintilla). Also got the lexers to work (i.e. if we open a CellML file, we can now see some syntax highlighting even though this was a quick and dirty way of showing things off). commit b5999c4bfe51fba14b062b6358fcd0541b9f5c9a Author: Alan Garny Date: Thu Mar 31 12:51:54 2011 +0100 Updated the documentation by providing links to the Git repository rather than local files (useful for the website version of the documentation). Some minor updates and cleaning up. commit 219d36b8d533d8412216b6d127d60fd7e0e8a36f Author: Alan Garny Date: Wed Mar 30 23:22:32 2011 +0100 Forgot to change the size of the icons on the new toolbars (Edit and Run) for Mac OS X. commit 6e9d35cde0b1e0af7df8bc511710db9bca5f0073 Author: Alan Garny Date: Wed Mar 30 17:49:35 2011 +0100 Added/updated shortcuts for some actions. Note that some actions share the same shortcut (e.g. Ctrl+C). This is completely fine (as long as the action is the same, e.g. to copy something), but doesn'\''t yet work. commit 45980f807416a9c83f3df33727648e0257b7ace0 Author: Alan Garny Date: Wed Mar 30 12:22:11 2011 +0100 Added the SBML logo as a resource. commit c9d7f81c85cb62e5a707109e890618802f00955c Author: Alan Garny Date: Tue Mar 29 16:18:19 2011 +0100 Added a debug mode to the Run menu/toolbar. Added an Edit menu/toolbar. commit 76eaac945d8c6ae94a257b5753eba5afff70eb25 Author: Alan Garny Date: Tue Mar 29 11:17:34 2011 +0100 Added a Run menu and toolbar. commit 42d20184dddbdb698c6888845ce7b10a30a111e8 Author: Alan Garny Date: Tue Mar 29 10:19:14 2011 +0100 Added a print toolbar button. commit 7f73232563f3f1e2b1198dd8587d5b2457ff51df Author: Alan Garny Date: Tue Mar 29 10:08:22 2011 +0100 Added a print menu item. commit b6064541dd0fe10a63a3ba05bf976b4e5ad8bbf3 Author: Alan Garny Date: Fri Mar 25 17:19:44 2011 +0000 WARNING - Quick and dirty way to get a file opened in an editor (for demonstration purposes tomorrow in Cambridge). This will definitely have to be removed afterards! commit 5ad5a996978df5374c9ff82c1a52e6963a3d6ef4 Author: Alan Garny Date: Fri Mar 25 16:26:59 2011 +0000 Main window: created a new widget which inherits from QTabWidget. The idea being that if the widget doesn'\''t have any tab associated with it, then we display our CellML logo otherwise we revert to the default paint handler. Added an instance of that new tab widget to our central widget (from which we took the logo code). commit ea01fa9a60d4dbc361f14df430b1ed0039770628 Author: Alan Garny Date: Fri Mar 25 15:19:37 2011 +0000 Main window: some further work on the opening of files. commit 99ac9c58317afb53d5a59bc83b3d36dd7782ed01 Author: Alan Garny Date: Fri Mar 25 14:32:36 2011 +0000 Main window: renamed the filesOpened slot to openFiles. commit 78652b8de4f05968754cbcf4a9ae59c630e41321 Author: Alan Garny Date: Fri Mar 25 14:30:05 2011 +0000 Main window: working towards opening files. Slightly improved the document manager as a result. commit 8c29341595bc33e0a6e806fa13d27d45589e6804 Author: Alan Garny Date: Fri Mar 25 14:21:15 2011 +0000 Main window: removed an obsolete function. Improved the handling of the dropping of files by making use of the filesOpened slot. commit 1ddf5bad660d929c77147c05fc873f4bde9e4fae Author: Alan Garny Date: Fri Mar 25 13:39:13 2011 +0000 File browser widget: what I thought fixed the problem with determining when the loading of the directories didn'\''t work on Mac OS X, so did it in a different (and better, in fact) way. commit 050276337a26aab06994d738eed43d22bf1c5ca7 Author: Alan Garny Date: Fri Mar 25 11:42:40 2011 +0000 Updated the documentation after having registered a domain name for OpenCOR: http://www.opencor.ws/. commit 8268f1af9abad4aa010284ab0ab6cf0a94cfbc5e Author: Alan Garny Date: Fri Mar 25 09:17:36 2011 +0000 File browser widget: fixed a problem with determining when the loading of the directories is done when the initial item is a file (everything seemed to be fine with an initial folder even though it wasn'\''t the end of the loading of the directories wasn'\''t accurately dtermined which it now is). commit d8144c60f7043c66fb51b90a5279e658a94df8a9 Author: Alan Garny Date: Fri Mar 25 08:33:15 2011 +0000 File browser window: improved the code for keeping track of the previous item (so that the user can go back to it, etc.) by using disconnect rather than a boolean. commit 4df6a9f8ae701fac50f2162040d8ac07c8df0195 Author: Alan Garny Date: Fri Mar 25 00:39:35 2011 +0000 File browser widget: refactored and improved the loading of settings code. commit fbfb0652e79ea3abe5e9ecc2a4b8eabe67154256 Author: Alan Garny Date: Thu Mar 24 23:51:08 2011 +0000 Some trivial refactoring of code. commit 0d15395193aadd891dc075df3ea32ec2357cb6c4 Author: Alan Garny Date: Thu Mar 24 17:21:23 2011 +0000 I had forgotten how to '\''properly'\'' capture Cmd+Down on Mac OS X... commit d48e851aa7994974755681cf4d94a56203bbc3a1 Author: Alan Garny Date: Thu Mar 24 16:46:16 2011 +0000 File organiser window: as for the file browser window, we can now '\''open'\'' selected files by pressing the enter/return key. commit cc1f9ca73166ed7f84b1a9c4e7a80f65bf41aea1 Author: Alan Garny Date: Thu Mar 24 16:24:17 2011 +0000 File browser window: can now '\''open'\'' one or several fiels by first selecting them and then pressing the enter/return key. This also required remaking the file browser widget focusable which, in turn, required showing the focus on all the columns at once (rather than individual cell which looked really bad considering the purpose of this widget). commit fd645aebc808e0cf90ae8d1a76852309828559b5 Author: Alan Garny Date: Thu Mar 24 15:34:41 2011 +0000 Trivial refactoring. commit e9f40965a07fe9353783f7754f2cb4e7917e63b7 Author: Alan Garny Date: Thu Mar 24 15:24:34 2011 +0000 File browser window: fixed a small (weird) problem. commit 4cdf9306b0527df0cabfd29a9af692fae5e277ca Author: Alan Garny Date: Thu Mar 24 13:53:29 2011 +0000 File browser/manager windows: Allow for files to be double clicked, and letting people know (through the emission of a signal) that it has been the case. From there, within the main window, we have a slot that connects to that signal, to handle it (nothing is currently being done to actually handle the double clicking of the file though). commit cd82299f5871388158e1d8f5863363f88e09edde Author: Alan Garny Date: Thu Mar 24 12:49:18 2011 +0000 File organiser widget: have the icon of a folder reflecting its expanded/collapsed state. commit 2942b753765e45866e0c46a8b7d0dd5f64ba2551 Author: Alan Garny Date: Wed Mar 23 19:23:41 2011 +0000 Fixed a minor issue with the about box under Linux which got introduced as a result of some old refactoring. commit 426d96855a5dc166dd3c08584b10ef89115cd2e7 Author: Alan Garny Date: Wed Mar 23 18:07:55 2011 +0000 Added a few more icons. (That Oxygen icon set is actually rather cool!) commit eedecf95936a92fb93c9c2f935ed7755ab81cbd1 Author: Alan Garny Date: Wed Mar 23 16:12:44 2011 +0000 Forgot to remove an icon that has been replaced by another. Otherwise, we are sticking to the Oxygen icon set indeed, since the Crystal one didn'\''t look as good. Still, the Oxygen set is very rich, so it'\''s a good choice in the end. commit 305c89da8e3ef2404605a6f263a6ea595875540c Author: Alan Garny Date: Wed Mar 23 16:11:07 2011 +0000 Added a few more icons to the application. commit 79a88cc06abb05a54fbf73618f952b6ef28b9804 Author: Alan Garny Date: Wed Mar 23 14:40:15 2011 +0000 Reverted the recent changes to QtMmlWidget. The original code was correct! commit c8ddf602d0c23197dc5ef20f77fd5fcebb34238e Author: Alan Garny Date: Wed Mar 23 13:38:11 2011 +0000 Replaced the Boomy icon set with the Oxygen one. Not sure I like it though! Might end up using the Crystal icon set. commit 4b76af9ec436a52e6da0d895657ea41d997d5217 Author: Alan Garny Date: Wed Mar 23 11:59:31 2011 +0000 Ok, we are going to keep using the '\''heart'\'' icon for the application icon. commit 6394fb35a0b8d60be77e46bd44c7164d831b2367 Author: Alan Garny Date: Wed Mar 23 11:35:50 2011 +0000 Updated the developer documentation with regards to the third party libraries we are using. Note: we are going to replace our use of the Boomy multiplatform icons with the Oxygen 4.6.1 icons, as reflected in the documentation but not yet in the source code. commit 8a89f33f7ce47910322898d479bb8c99ad1d91c8 Author: Alan Garny Date: Wed Mar 23 11:32:32 2011 +0000 Updated our copy of QtMmlWidget. commit b8bdb964c6e9c04e3981bc2d4e35e02015fb2831 Author: Alan Garny Date: Wed Mar 23 10:55:39 2011 +0000 File organiser widget: allow the dropping of symbolic links. commit 2973e6c0495988bee12312373a03b7b529fc447b Author: Alan Garny Date: Tue Mar 22 20:48:53 2011 +0000 File organiser widget: expand the folder where one drops a file. commit 23b7d1a61029942a8aabb444f7f563ff529973b6 Author: Alan Garny Date: Tue Mar 22 18:24:11 2011 +0000 Oops! Overlooked something during the merging / conflict checking... commit a44c3776dfcbbfdbe89446bbbc0d621cf36ed9da Merge: 9a83f3e75 7c419607c Author: Alan Garny Date: Tue Mar 22 18:15:39 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: src/widget/organise/fileorganiserwidget.cpp commit 9a83f3e75784dd249a4f111aa1f63b85f4eb5519 Author: Alan Garny Date: Tue Mar 22 17:58:37 2011 +0000 Minor refactoring. commit 7b546540c6e0c2a848636fe8b2ece05444eb875c Author: Alan Garny Date: Tue Mar 22 16:59:50 2011 +0000 Specifically accept the dropping of URIs on the main window and on the file organiser widget. Improved the enabling/disabling of the New action in the file organiser window. Only accept the dropping of files (i.e. not folders and no symbolic links either) on the file organiser widget. Check that a file being dropped on the file organiser widget is not already present in the folder item where we want to drop it. Check that the creation of a folder in the file organiser widget is only done within another folder (i.e. we can'\''t create a folder '\''in'\'' a file!). commit 7c419607c779ce9fcfbda3208193bac0690cd60f Author: Alan Garny Date: Mon Mar 21 20:29:35 2011 +0000 '\''Fixed'\'' an issue with QWebView taking over other widgets that are being scrolled. Basically, the problem was that if one was, on Mac OS X, scrolling (using the two-finger trackpad method) the file browser widget, then either the CellML Model Repostory widget or the help widget would also scroll which is clearly not what we want! commit 3663c0e0f68f6cbee506e57ac6fa682718828084 Author: Alan Garny Date: Mon Mar 21 20:00:30 2011 +0000 File organiser widget: made sure that we can always see the whole contents of the widget. commit 178b427ab90240e417c204272a940a314965939c Author: Alan Garny Date: Mon Mar 21 19:27:13 2011 +0000 File organiser window: reverted the automatic selection of a folder/file upon its creation/addition. Indeed, in the case of a folder, if we create several folders in a row, the first folder will be created where one would expect, but then any subsequent folder will be created in the first folder which is not what we want (we indeed want all the folders to be created in the same parent folder). In the case of a file, it doesn'\''t make any difference, so we are just being consistent here. commit 5d5ca557a8bf03b163109c50b82da79103740583 Author: Alan Garny Date: Mon Mar 21 19:06:33 2011 +0000 CellML Model Repository widget: used the same trick as for the help widget when it comes to the border that is to be drawn when the widget is on a docked window. commit 42ead9fe693b92b21d80b00896beb45b802a2834 Author: Alan Garny Date: Mon Mar 21 18:06:25 2011 +0000 Prevent the dropping of objects on the help and CellML Model Repository widgets. Indeed, they are based on QWebView which by default accept the dropping of objects. Also override dragMoveEvent which I hadn'\''t realised needs overriding to get the dropping of objects to work. Added support for the dragging and dropping of objects on the file organiser widget. Fixed a minor issue with FileOrganiserWidget::newFolderName which wouldn'\''t always use "New Folder", even though the name is not used by another folder. commit adb7e0d4907ec1d347395b9513207beadd95c0a8 Author: Alan Garny Date: Mon Mar 21 16:48:45 2011 +0000 Cleaning up of code. commit 963a92fa18c4d7a41bad6b2c60488226fe7c98c3 Author: Alan Garny Date: Sun Mar 20 19:09:13 2011 +0000 File organiser window: implemented the loading of settings and it works fine with both folders and files, even though the latter can still not be added to the organiser as such. Also show the full path of a file using the tooltip whenever hovering over a file item. commit 5509ecdd9a13924bebe69fe84616b149ea8a4672 Author: Alan Garny Date: Sun Mar 20 16:41:33 2011 +0000 File browser/organiser widgets: re-allow a right mouse click to activate an item. commit ff6a27b3813d4a078c55029ca7eb1c39bc943d4f Author: Alan Garny Date: Sun Mar 20 12:50:22 2011 +0000 File organiser window: can now save the settings of the file organiser widget. (Still needs further testing though, not least because we don'\''t yet have the loading of the settings implemented and files are not, through drag and drop, yet supported.) commit 097834a19b6409aaf28b8433147f69fa46b144c0 Author: Alan Garny Date: Fri Mar 18 17:42:04 2011 +0000 Oops, forgot to remove something that I was using for testing purposes. commit 77b621cccbc010b0b2c4583ef9a517a4343c4105 Author: Alan Garny Date: Fri Mar 18 17:39:26 2011 +0000 File organiser window: added a context menu to the file organiser widget. commit 3e9fc3906d307374fef11e21947a8ea8bed09c98 Author: Alan Garny Date: Fri Mar 18 16:27:08 2011 +0000 Added a custom context menu in the file browser window. Very minor editing. commit b1a40f8949bae89be56c38aedd5d961bd0d0637e Author: Alan Garny Date: Fri Mar 18 15:52:43 2011 +0000 File organiser window: prevent the selection of an item using the right mouse button (since this should be used for a popup menu, if needed). commit cf7c646c53db19e8345ed619240959417542ae6a Author: Alan Garny Date: Fri Mar 18 15:48:21 2011 +0000 File organiser window: make sure that the contents of the widget is always visible. commit ab1fb1405b2098403f43d5d70afc6312ed970175 Author: Alan Garny Date: Fri Mar 18 15:20:57 2011 +0000 File organiser window: only go into edit mode, upon adding a new folder item, only if no other folder item is already being edited (otherwise this generates an error message on the console -- on Linux at least). commit ac86589dca254b9ec0e94b921593680c08b25b29 Author: Alan Garny Date: Fri Mar 18 15:09:51 2011 +0000 File organiser window: allow the editing of a newly added folder item. commit c13c5285e51cc6e236311e4344814d0a66578bf3 Author: Alan Garny Date: Fri Mar 18 14:54:52 2011 +0000 File browser window: can now delete selected items. commit f17a8f802b76298cb14593066f9e9dcbb61f309d Author: Alan Garny Date: Fri Mar 18 13:17:43 2011 +0000 File browser window: removed a couple of connections in the file browser widget which are not relevant anymore. commit d498f5b827cea5dca769f02594ad7c8fdbbc04e2 Author: Alan Garny Date: Fri Mar 18 12:45:10 2011 +0000 File organiser window: enable/disable the toolbar buttons depending on what is selected, if anything. commit 7f9f0977573c0d3fd0b6efe87220ad914ab81d03 Author: Alan Garny Date: Fri Mar 18 12:03:51 2011 +0000 Though some more work is definitely required, here is a first shot at allowing the creation of folders in the file organiser window. commit 7b394055991c30b9ff8b253cdfa5974bf3166f69 Author: Alan Garny Date: Fri Mar 18 11:58:35 2011 +0000 Some more minor editing. Slight improvement to the file browser widget. commit a61c382872ad27fc048567d42acdb65d141b6740 Author: Alan Garny Date: Fri Mar 18 11:56:56 2011 +0000 Added an icon for the preferences menu item. Some very minor editing. commit 5a13512485b46482cce7e706acef30a5f72fb4cf Author: Alan Garny Date: Thu Mar 17 16:54:45 2011 +0000 Slight update to the about box. commit df1d4a034d1a67e318f6617aae7e92e5a84f3d9a Author: Alan Garny Date: Thu Mar 17 15:51:49 2011 +0000 Forgot to add a header file to src/ui/organise/fileorganiserwindow.cpp in the last commit. commit d40099bdce174fd0912c1ea31dcf53d621c22829 Author: Alan Garny Date: Thu Mar 17 15:50:43 2011 +0000 Working some more on the file organiser window. commit 213e0d4727ec80740382eaaadad19bfcbb6396e2 Author: Alan Garny Date: Thu Mar 17 15:32:34 2011 +0000 Added a new menu item to allow the user to specify his/her preferences for OpenCOR. commit 9983d90de85ed8aa36e5a3c620af03abf7bd475d Author: Alan Garny Date: Thu Mar 17 12:08:08 2011 +0000 Hmm... ok, I wouldn'\''t have thought that a "\" would have caused a problem in a .rc file, but I guess it'\''s because we are doing things through CMake...? commit d352cc6d6477f8ce137f0488c8dada913e8a42c3 Author: Alan Garny Date: Thu Mar 17 11:56:43 2011 +0000 Slight changes to our main CMakeLists.txt file and makeproj.bat file. commit cd47e5f465deaad213f2bb34dc3ce511a33f4f1b Author: Alan Garny Date: Thu Mar 17 11:41:44 2011 +0000 Slight oversight for Mac OS X (following the last commit). commit 311b494a88d663166499a6230b97601eb7427bcf Author: Alan Garny Date: Thu Mar 17 11:36:25 2011 +0000 Minor update to the developer documentation. Also better organised the resources that we are using. commit 9aff6c02baa4689a39298aa692d21935b000391a Author: Alan Garny Date: Thu Mar 17 08:22:15 2011 +0000 Re-added the demo equation in our MmlViewerWidget, for demonstration purposes. commit 3457dc12ecda5fdadd3c4535a108339d7eb0d897 Author: Alan Garny Date: Thu Mar 17 08:14:43 2011 +0000 Minor update to the runproj[.bat/.vbs] scripts. commit be4852d45a42904d50dec3648a93405e23630ae0 Author: Alan Garny Date: Wed Mar 16 14:52:49 2011 +0000 Minor update to the developer documentation. commit 6a31db368a057fa50f7e7f1168e3dad2a474bfd1 Merge: 50d3bda5e 2c5cfd7fd Author: Alan Garny Date: Wed Mar 16 14:38:48 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 50d3bda5e03b7638ebc2815d7831e36e888b730a Author: Alan Garny Date: Wed Mar 16 14:37:35 2011 +0000 Updated the developer documentation following the addition of a '\''proper'\'' debug build process. commit 754adf7d56b8f206697cff72802685f9bc91f061 Author: Alan Garny Date: Wed Mar 16 13:51:23 2011 +0000 Improved the debug build process. commit 8f245e82ebd23fe77b570770a3e7d5dd698e4fd5 Author: Alan Garny Date: Wed Mar 16 11:24:14 2011 +0000 Trying a possible approach to debugging on Windows (since this is not '\''straightforward'\'' when using CMake). This will most likely be replaced with another solution though... commit 7315fce3b3dc12a83fae95f1cc0026e3587d4a36 Author: Alan Garny Date: Wed Mar 16 09:21:57 2011 +0000 File organiser window: removed the horizontal spacer between the New and Delete buttons in the toolbar. Though '\''nice'\'', I am not sure it'\''s good UI practice. commit 2c5cfd7fdc5d094db98da7cb0bb7d29406f1248c Author: Alan Garny Date: Tue Mar 15 19:03:25 2011 +0000 Set some properties for the file organiser widget, and remove the focus border which is shown on Mac OS X but messes up our toolbar (i.e. same story as for our file browser widget). commit 1c97334526220d62e67a26f7460defb5f673c004 Author: Alan Garny Date: Tue Mar 15 17:32:11 2011 +0000 Minor improvements to original status tips and their translation. Started work on the file organiser window. commit 55c8c1b723cac720adf4dd4dc14c03332c25f800 Author: Alan Garny Date: Tue Mar 15 16:55:26 2011 +0000 Some cleaning up of code. commit 28021ed544db086493387a615a2d241e5300d1cd Author: Alan Garny Date: Tue Mar 15 16:24:29 2011 +0000 File browser window: improved the go to previous/next folder/file feature. commit 2aabf157b0236f4c99ccaaf0bb297ea38855c3de Author: Alan Garny Date: Tue Mar 15 14:45:11 2011 +0000 Some more cleaning up (following the reworking of the file browser window). Also, going to the previous/next item (in the file browser window) should now work (still need some more testing though!). commit fb4d1d4b90832bab8acb574f672770ff951212a1 Author: Alan Garny Date: Tue Mar 15 12:07:35 2011 +0000 File browser window: some more cleaning up and improvement to the previous/next folder/file feature. commit 09c6b3032589ec136c1a58392b44dd06b29e95e4 Author: Alan Garny Date: Tue Mar 15 10:59:56 2011 +0000 File browser window: simplified the code, not least because we don'\''t have the New and Delete features anymore. commit d5e62a1ca8cfadd26d97a7a5a029ff456bd8a5d0 Author: Alan Garny Date: Tue Mar 15 09:25:42 2011 +0000 Minor updates to the developer documentation. commit 57eb7bc213d76ee18bf4fdbcdf5e2969d042ffb3 Author: Alan Garny Date: Mon Mar 14 17:37:25 2011 +0000 Fixed a stupid problem with CommonWidget (which was setting the name of its parent rather than itself!). commit 14399ad9285d7ca9af0b3deb4aea40d743b65b04 Author: Alan Garny Date: Mon Mar 14 17:24:49 2011 +0000 Some further improvements with regards to CommonWidget. commit c16999f85ac56121b811b9ef83c79c5b14a88bd2 Author: Alan Garny Date: Mon Mar 14 17:03:26 2011 +0000 Improved our reliance on our CommonWidget class (which support the loading/saving of settings, retranslation, etc.). Improved our implementation of loading/saving settings. commit 7a265f86d637d56e9cd44d81b6bc05dfe6270927 Author: Alan Garny Date: Mon Mar 14 14:34:58 2011 +0000 File browser window: simplified it by removing the New and Delete actions. Indeed, QTreeView (when used with QFileSystemModel) doesn'\''t refresh as nicely as one would hope/expect (e.g. adding a new folder will result in that new folder being '\''listed'\'' even if it should be first because of its name). It might be possible to get things to work as hoped/expected, but it might take too much time and there are plenty of other things to do, so... Well, it'\''s probably better that way anyway... (I.e. things are left nice and simple.) commit 11410c9e5b1b746ac37f49d8ff49f0d049a717bb Author: Alan Garny Date: Sun Mar 13 19:28:28 2011 +0000 File browser window: updated the code for going to the parent directory. commit ecf0ec452e6e14e09a4120d7282312409d1ef64f Author: Alan Garny Date: Sun Mar 13 18:22:46 2011 +0000 Slight updates to the doc/developBuildTestAndPackage.html file. commit c4c8a17f7e9ef88df6779a4fa1be899984c21a96 Author: Alan Garny Date: Sun Mar 13 12:07:04 2011 +0000 File browser window: made symbolic links visible, since they are common on Linux / Mac OS X. commit 54f0d797b62ddf8a922c7c7effc6f88a793bbca7 Author: Alan Garny Date: Sat Mar 12 23:46:58 2011 +0000 Argh, another overlook for Mac OS X! (Also changed/reset(?) the permissions on distrib/application.sh.linux.in) commit aea9e073d72cf7a86acbe083e0f2673b4f46620a Author: Alan Garny Date: Sat Mar 12 23:39:44 2011 +0000 Slightly improved the deployment on Linux and Mac OS X. commit 898a776d218f622744efb9943cc58960af0f5fb4 Author: Alan Garny Date: Sat Mar 12 23:37:24 2011 +0000 Fixed a small oversight regarding the Mac OS X deployment. commit c8ce54e53f270bf96df7eb446c83e0eba0f8ca8a Author: Alan Garny Date: Sat Mar 12 23:28:13 2011 +0000 Fixed a small mistake regarding the Windows deployment. commit 6b7fce7997233a501f99409c5b91f4c3694cb825 Author: Alan Garny Date: Sat Mar 12 23:22:56 2011 +0000 Improved a few things when it comes to deployment. commit ae1b63f23f82dda671b308898692365923de3e69 Author: Alan Garny Date: Sat Mar 12 19:30:09 2011 +0000 Reworked some code (with regards to the creation of a new CellML file from within the file browser window) to take advantage of the signal/slot approach. commit 4678d2e7f857813a8cf28d4ac3abc5c7b89e9f0d Author: Alan Garny Date: Sat Mar 12 19:10:30 2011 +0000 Slight improvements to the file browser window. commit b3ddf810e3f49e4c84186f286fe7032ac19d9a9b Author: Alan Garny Date: Sat Mar 12 18:31:44 2011 +0000 Improved the tracking of folders navigation in the file browser window. commit bd587503b02eb6cd824a4f88b22485a336164ed8 Author: Alan Garny Date: Sat Mar 12 15:44:49 2011 +0000 Slight improvements to bringing OpenCOR to the foreground (as a result of running a second instance of OpenCOR). commit 7c4ad9c1a6797fea93e0a6884f860c2a14881c26 Author: Alan Garny Date: Fri Mar 11 18:52:36 2011 +0000 Fix to a small issue in the document manager (a dropped file would be recorded its url rather than its system-specific format file name). commit 53b5a2747cf466c6dda7895d9bcc80bdcc2ab142 Author: Alan Garny Date: Fri Mar 11 18:29:49 2011 +0000 Minor fix to the creation of a CellML file (not quite the right information was being displayed when trying to create a CellML file that already existed). commit 955a454e0b9f26945811e0cdfc0cfcf4193d6dba Author: Alan Garny Date: Fri Mar 11 18:22:28 2011 +0000 Can now create a new CellML 1.0/1 file from the file browser window, and have it managed by OpenCOR. commit a783e0597dcaaeb7c0d125a49bfb84fa1cb3ef3a Author: Alan Garny Date: Fri Mar 11 17:50:28 2011 +0000 Replaced #define statements by static const (i.e. slightly better). Added a document manager to the main window. commit a1d95eecb1a4346dd5ed867e65d6c879aae5a2ab Author: Alan Garny Date: Fri Mar 11 17:47:55 2011 +0000 Minor corrections to the best practices document. commit 847e1b93eb3e555027ba4e713958fe3f44005990 Author: Alan Garny Date: Fri Mar 11 14:48:16 2011 +0000 Cosmetic update to the best practices (developer) document. Implemented a basic document manager which is a prerequisite to handling documents in OpenCOR. commit 5a7c78e93578c43dc318700d001223211519ef34 Author: Alan Garny Date: Fri Mar 11 13:46:40 2011 +0000 Created the skeleton of a document manager which will be used to keep track of the various documents opened in OpenCOR. commit f9b7e4a531963895ef6e068de39f1d76cda7778c Author: Alan Garny Date: Fri Mar 11 13:01:30 2011 +0000 Starting work on adding a new CellML 1.0/1 file from the file browser window. commit 5e73788cac8759eb5c75b7150548162256883d02 Author: Alan Garny Date: Fri Mar 11 12:08:10 2011 +0000 Use our own Info.plist file (Mac OS X specific), since it allows to associate .cellml files to OpenCOR. commit 4bc4198450810e663d20d13f16684393e5c1aaed Author: Alan Garny Date: Thu Mar 10 19:29:39 2011 +0000 Simplified the main CMakeLists.txt file. commit c5f8c1b9ba4cdba24eb56124d0c1b8656e7f987c Author: Alan Garny Date: Thu Mar 10 19:05:33 2011 +0000 Who would have thought that a '\''wrong'\'' choice of parameter name in the main CMakeLists.txt file could have resulted in such a spurious error?! commit 2413ba9c77ad0ed2c14385df60cd3d442b14d6a1 Author: Alan Garny Date: Thu Mar 10 18:42:03 2011 +0000 Replaced tabs with spaces. commit 29d4c35d95826ca4085a9f08954389ee551aeb59 Author: Alan Garny Date: Thu Mar 10 16:01:07 2011 +0000 Slightly improved the Mac OS X build. commit baa56f8ac5b125acb133a0875aac5fb546dee729 Author: Alan Garny Date: Thu Mar 10 15:21:24 2011 +0000 Some minor improvements to the main CMakeLists.txt file in general and for Mac OS X in particular. commit 078ed03a872fe0c2a31a4bbbbe5f32375b667a58 Author: Alan Garny Date: Thu Mar 10 12:47:34 2011 +0000 Oops, I had modified packageproj.bat to make my tests faster (for the last commit) and forgot to revert it! commit e26e2abeee7a3ee31790c79553127cddb2c7a67a Author: Alan Garny Date: Thu Mar 10 12:45:43 2011 +0000 Added file type association for the Windows installer (i.e. .cellml files are now associated to OpenCOR). commit 59c535e2d630689dd4974b1c5f31c7537d353601 Author: Alan Garny Date: Wed Mar 9 19:05:39 2011 +0000 Fixed a small issue with the utils functions. Also updated the main CMakeLists.txt file to account for the two CellML files that were added in the last commit. commit 4ca4051d7421bc8898c188bd71173453816e4ae8 Author: Alan Garny Date: Wed Mar 9 18:09:54 2011 +0000 Added two CellML files (the original Hodgkin-Huxley model and the van der Pol model) which will act as some kind of examples for OpenCOR. commit bcfa85333155fab1b183eae50551e75e35d27a82 Author: Alan Garny Date: Wed Mar 9 16:40:36 2011 +0000 Stupidly big commit. Update the best practices (developer) document, as a result of some reworking of event-related code. Reworked some of the utils functions, and added a new one (removePath). Did some cleaning up. Added a tooltip for when hovering an entry in the file browser window (the idea being to show the full path for that entry). Fixed a small problem of initialisation (of the previous folder) in the file browser window. Can now delete a file/folder in the file browser window (recursively in the case of a folder). commit c70338e5b6fd8f829a70a5b046ec9709edfe1e0b Author: Alan Garny Date: Wed Mar 9 09:46:33 2011 +0000 Improved the creation of a folder, in the file browser window, by adding a regular expression to validate a folder name. commit 9b5bb3640f1a356c02112d2c89d12c523f03b1ff Author: Alan Garny Date: Tue Mar 8 19:07:38 2011 +0000 Can now create a new folder from within the file browser window. commit 9b19ac53e1f6712d87b146692652dfbde8fafec5 Author: Alan Garny Date: Tue Mar 8 13:55:18 2011 +0000 Getting there with the previous commit! commit 9051ca549f54ab0696ad959edec083cd799a7131 Author: Alan Garny Date: Tue Mar 8 13:53:56 2011 +0000 Reverted part of the previous commit since we still need to decide on the license for OpenCOR. commit 0c953aff7907916ad51928382004554bbc8dc8c4 Author: Alan Garny Date: Tue Mar 8 13:45:30 2011 +0000 Slight update to the third party libraries information. commit c71a2c264956839cbb15ba0932a518489d5b40a7 Author: Alan Garny Date: Tue Mar 8 12:57:01 2011 +0000 Updated the developer documentation by adding some information about parallel compilation. commit 4660326d5c1e03a95870bf0e68ce2d7846c740b0 Author: Alan Garny Date: Tue Mar 8 11:17:30 2011 +0000 Dealt with the default behaviour of the New button in the file browser window. commit 6b2b52bbd9a6cdbe7129d94402b06de7e1374746 Author: Alan Garny Date: Tue Mar 8 09:15:53 2011 +0000 A bit of refactoring and started resuming work on the file browser. commit 97fcf3c591778c738ee814637c88d9db26e7b75a Author: Alan Garny Date: Mon Mar 7 17:47:05 2011 +0000 Updated the developer documentation (regarding installing Qt Creator on Ubuntu). commit 7ec79e20810c93e5d12a5c610e59d75e0a4efbb5 Author: Alan Garny Date: Mon Mar 7 16:26:26 2011 +0000 Set the first version of OpenCOR to 0.1.0 (rather than 0.1.1). commit 647f58f0f99a622f67e3d15d092ae1e352a4d845 Author: Alan Garny Date: Mon Mar 7 16:24:10 2011 +0000 Slight update to the developer documentation. Also slightly updated the style sheets for the documentation. commit 56cd2395a1a3fef1282a0c443b7dae343898b3b6 Author: Alan Garny Date: Sun Mar 6 19:28:49 2011 +0000 Updated the developer documentation to give more detailed instructions on how to get a Qt 4.7.2 and Qt Creator 2.1.0 environment on all three platforms, this using individual components (rather than the overblown Qt SDK 1.1 Beta which is causing problems -- it'\''s a beta after all!). commit 6f41c4311bad297f0ec602ba9fbc41d165bb1579 Author: Alan Garny Date: Sat Mar 5 18:22:27 2011 +0000 Minor updates to the developer documentation. commit cd1292a6613d7e0e6ddaa68c38f7fc085c88e24b Author: Alan Garny Date: Fri Mar 4 19:26:14 2011 +0000 Allow to specify the number of processors for the build/packaging. commit a8d82a8981ab4655899919b8023e4f2a27d43bde Author: Alan Garny Date: Fri Mar 4 14:15:35 2011 +0000 Minor update to the developer documentation. commit 02210bbc4db31387bfb77fa901fd78507afad19d Author: Alan Garny Date: Fri Mar 4 13:25:23 2011 +0000 Started work on the New button in the file browser window. commit 9b1b4473c9e1173b8c08e4cf6a17154bcd58e7b1 Author: Alan Garny Date: Fri Mar 4 11:40:19 2011 +0000 Slight update to the developer documentation. commit 889f78056ae04518b086f85196fd89128d18c3c4 Author: Alan Garny Date: Fri Mar 4 10:13:52 2011 +0000 Updated the developer documentation following the release of an updated version of Qt Creator and Qt itself. commit c590d218ee4c77b98d5409c5bb2d1982383c0284 Author: Alan Garny Date: Thu Mar 3 19:32:52 2011 +0000 Minor GUI improvement to the loadSettings of the file browser window. commit 27ee984041b8451ac1216898c8752fdebb4f3b71 Author: Alan Garny Date: Thu Mar 3 19:18:28 2011 +0000 Minor improvement/fix to the file browser window. commit b439a32d2d047387f46e03f572c89ef0697d4a7a Author: Alan Garny Date: Thu Mar 3 19:09:59 2011 +0000 Implemented the parent folder button in the file browser window. commit 334a9aead93a2ea6d5afda61f8b56ccb11c39f28 Author: Alan Garny Date: Thu Mar 3 17:40:22 2011 +0000 Implemented the previous folder and next folder actions. commit 2e7a6018c95f59ff959674ceae654dd7c316f751 Author: Alan Garny Date: Thu Mar 3 15:44:34 2011 +0000 Started work on implementing the other buttons in the file browser window. commit bd3505fb8e77f74c8cc8856798b9fc1872a2cd3e Author: Alan Garny Date: Wed Mar 2 18:16:36 2011 +0000 Improved the CMakeLists.txt files for the 3rd-party libraries we use. commit 51fe97adf8f4eaa50dcc05b941bda8a7c1111e9b Author: Alan Garny Date: Wed Mar 2 17:00:44 2011 +0000 Improved the main CMakeLists.txt file. commit 92226123bb28a2b62db22b4f0fb4fee9bbb814a6 Author: Alan Garny Date: Wed Mar 2 09:58:13 2011 +0000 Slight update to the developer documentation as a result of a new version of Qt Creator. commit 73b9f60256c23be5d2c3baa5e1e273a11a6c2776 Author: Alan Garny Date: Sun Feb 27 18:50:11 2011 +0000 Some cleaning up of code. commit 3b16c3788f6e3ebd6ea49c48f53a886c6eb06bbd Author: Alan Garny Date: Sun Feb 27 18:39:37 2011 +0000 Hmm... Ok, I started doing some inlining and it'\''s quite insane. I really don'\''t like some code to be in header files, so not going ahead with inlining and really leaving it to the compiler to do a good job at optimising things. commit df886992401fa7af740389672269efe961f71403 Author: Alan Garny Date: Sun Feb 27 17:16:17 2011 +0000 Modified, in the developer documentation, the best practice rule regarding inline functions. commit 9617608134a11152060c6b44a594b9d8379b9c22 Author: Alan Garny Date: Sat Feb 26 02:10:47 2011 +0000 Addressed a small issue with the help widget. commit c939a8a23c2d4865b7185ddb625d7082c93f4b79 Author: Alan Garny Date: Sat Feb 26 01:51:43 2011 +0000 Slight improvements to the style sheets for the documentation. commit 4f41de55568f01792ca9006accb0965430b88ac8 Author: Alan Garny Date: Sat Feb 26 01:36:35 2011 +0000 Moved a couple of files. Updated the developer documentation. commit 03bbcf4ac04b7e2beb2efed267620c494bbeeb5d Author: Alan Garny Date: Sat Feb 26 00:59:44 2011 +0000 Improved the style sheets for the documentation. Also fixed a small style sheet problem in the user documentation. commit 019b8a0c871265d460b8fb184ed39b03f84f29c9 Author: Alan Garny Date: Fri Feb 25 23:08:21 2011 +0000 Re-added the setUnifiedTitleAndToolBarOnMac code, but commented it out, since there is a known bug that prevents the loading/restoring of the application geometry from working properly (see http://bugreports.qt.nokia.com/browse/QTBUG-3116). commit 5404be8e16c1d5010e5f3161d8caf0ace9aafd4e Author: Alan Garny Date: Fri Feb 25 22:50:10 2011 +0000 Slight update to the developer documentation. commit 4ff6dee6eba7a5f235c98f5e3ff4d55d9c78dddf Author: Alan Garny Date: Fri Feb 25 19:02:41 2011 +0000 Prevent right clicking with the mouse from selecting the row beneath the mouse in the file browser widget (useful if we want to display a context menu which we happen to want!). commit cc15c8f0413d2e6ecac29827bbb25f77526244cb Author: Alan Garny Date: Fri Feb 25 18:19:27 2011 +0000 Slight improvements to the code for the context menus in the file browser and help windows. commit ac7cc31e912cdf54e6d5d7fc9a6fd7b7d69601d7 Author: Alan Garny Date: Fri Feb 25 17:30:14 2011 +0000 A bit of refactoring (to make the update of the enabled state of actions easier). Some cleaning up. Got the home button on the file browser window fully functional. commit c2f8baa9c29a05c0b87444185e3e490c167fa3a5 Author: Alan Garny Date: Fri Feb 25 15:27:09 2011 +0000 Following our best practices and '\''improved'\'' our drag & drop settings. commit f8e455026e2bdb5dc1c01e90c756c7851e6c58c7 Author: Alan Garny Date: Fri Feb 25 11:53:13 2011 +0000 Added a custom context menu to the file browser window. commit d6f9ee4f967951e05bd5c04212915815ff5903fa Author: Alan Garny Date: Fri Feb 25 10:53:56 2011 +0000 Renamed PMR Explorer to CellML Model Repository. commit 4e2e298bfd4cc1b70373cd56b644b0d247f3abb8 Author: Alan Garny Date: Fri Feb 25 10:29:47 2011 +0000 Made the PMR Explorer widget inherit from QWebView, and load the CellML Model Repository page for now. commit 0ff2aecf391fb933127188797f949ed58011e53b Author: Alan Garny Date: Fri Feb 25 10:14:09 2011 +0000 Some cleaning up. commit c462c80fdec7103154a2a3c14ddf0bfbe7d6b4bc Author: Alan Garny Date: Thu Feb 24 21:02:16 2011 +0000 Added a few menu items to the Help menu. commit c8b10af81a3eb084af3af572120cb34ac92c70da Author: Alan Garny Date: Thu Feb 24 20:05:39 2011 +0000 Sub-classed QDockWidget so that we can style its title bar for Mac OS X (by removing the padding for the float and close buttons since it makes the title bar of a docked (not floating) window insanely big). commit 844d9a6f8032ddf094e5bdb8bf851a9cead14d00 Author: Alan Garny Date: Thu Feb 24 19:21:20 2011 +0000 Being pedantic. commit 90147fd82b2ef3b34c58dd9378a03078d9a480d9 Author: Alan Garny Date: Thu Feb 24 19:03:34 2011 +0000 Removed some obsolete French translations (had forgotten to do that in the last commit). Also hard-coded (!!) the size of the toolbar icons (they are really big on Mac OS X!). Finally, removed the focus border that is drawn on the file browser widget on Mac OS X (it used to mess up our toolbar!). commit d860677c8ce5f8d75a26e5bd897909d3e558ffa0 Author: Alan Garny Date: Thu Feb 24 18:40:51 2011 +0000 Here goes for a cleaner solution to the toolbar '\''issue'\''. Implemented in both the file browser and help windows. commit e809477f418f431449494ac00c9d4a145c342eae Author: Alan Garny Date: Thu Feb 24 17:47:42 2011 +0000 Just realised (doh!) that for the dock windows that need a toolbar (the file browser and help windows at this stage), we can programmatically add a QToolBar object to the window. I guess I got misled by the fact that the UI editor in Qt Creator doesn'\''t allow one to do everything. In fact, it might even possible to add this directly in a .ui file. Whatever the case, the stylesheet file is not required anymore which is a very good thing (since it '\''forced'\'' to have a common look&feel for QToolButton on all three platforms which was really not great). commit fcdb90e1be21540073926d519c5ef566648ac544 Author: Alan Garny Date: Thu Feb 24 16:50:57 2011 +0000 Added a drop-down menu to the New button in the file browser window. Need to improve the style sheet for QToolButton though since it doesn'\''t currently handle drop-down menus. commit 113eaf53797ba67fb4abb2916580bf9bda9eb290 Author: Alan Garny Date: Thu Feb 24 15:38:24 2011 +0000 Added a delete button to the file browser window. commit 2a278a767fd861a7270c574409ef6a9a0ff7f185 Author: Alan Garny Date: Thu Feb 24 14:04:18 2011 +0000 A bit of cleaning up of the CSS files. Added Google Code Prettify so that demo codes can be syntax highlighted. (This is currently only relevant for the developement documentation, but will to be for the user documentation when we give snippets of COR-like codes). commit 289f7852b16f7d2a14413c17efe79fdd8ae52a3c Author: Alan Garny Date: Wed Feb 23 20:08:28 2011 +0000 Corrected a French translation with a wrong HTML tag. commit 1f2e85b88eee13ef91807c480aa92c0f26105828 Author: Alan Garny Date: Wed Feb 23 20:00:01 2011 +0000 Some cleaning up in the file browser windows. Renamed a few things and updated some French translations. commit c835e674a968d4628a1b341bd08dd28b74e16bc8 Author: Alan Garny Date: Wed Feb 23 19:50:48 2011 +0000 Confirmed that the file browser also works on Mac OS X. commit 85c5bd5674b8f870e6ef21f6e2948e1ed4d3378f Author: Alan Garny Date: Wed Feb 23 18:20:37 2011 +0000 Added a "New" button to the file browser window. Still nothing functional in there though. commit dbcdf5fe28f8c3e0f4fa2b2dbdef6d01d927af51 Author: Alan Garny Date: Wed Feb 23 17:43:54 2011 +0000 Improved the CSS file. commit f7e33853283bd28512935cf740050e03f02e3832 Author: Alan Garny Date: Wed Feb 23 16:48:23 2011 +0000 Added some '\''proper'\'' separators in the secondary toolbars. commit b4f98d7b3a7491f09d54543c04cc1f054278d0e0 Author: Alan Garny Date: Wed Feb 23 15:08:32 2011 +0000 The columns of the file browser can now be resized (and properly initialised the first time round). commit b0fa3747c7adcf32d8005f5c42da7fad36b85276 Author: Alan Garny Date: Wed Feb 23 14:37:36 2011 +0000 Our recent file browser work was perfect for Windows, but on Linux there were still some events that needed processing, so we now do that and it all works fine now. commit 9d48b93dc987faf2fa9d4e30f785645336b191c7 Author: Alan Garny Date: Wed Feb 23 14:02:10 2011 +0000 Slightly revised the default layout. commit b82eff61463c6fcb2abc5f7308a1459570eecd3a Author: Alan Garny Date: Wed Feb 23 13:57:08 2011 +0000 Finally got the file browser to properly retrieve the folder/file that was last selected. The '\''trick'\'' consisted of handling the QFileSystemModel::directoryLoaded signal commit 351f47122c292b00ae206dd4fb409e7f14835adb Author: Alan Garny Date: Tue Feb 22 13:57:26 2011 +0000 Some simple cleaning up of code. commit 770a666a4f6675439bf9b262afdcf770f9266ca5 Author: Alan Garny Date: Tue Feb 22 12:27:19 2011 +0000 Refactored the overall code so that we don'\''t make use of defaultSettings() anymore. Instead, things get either moved to the constructor or loadSettings(). commit 9c44b9f5fb9ce31b127d91af865d3d0012a825ec Author: Alan Garny Date: Mon Feb 21 18:08:21 2011 +0000 Updated the Known Issues/Limitations user documentation with a known problem not with OpenCOR but with Windows. commit cf4d36d8e68d88816458d069e72dfe8e7b89950b Author: Alan Garny Date: Sun Feb 20 11:52:53 2011 +0000 Changed a comment. commit 85a9a26d8d745c15ec7b45c07ef5592adda66f1d Author: Alan Garny Date: Sun Feb 20 11:39:45 2011 +0000 Some cleaning up of code. commit 128d7544305fb14979d516904df72442a8e70b91 Author: Alan Garny Date: Sat Feb 19 02:37:34 2011 +0000 Slightly reformatted OpenCOR.css. Also, tweaked FileBrowserWindow a bit for Mac OS X. commit d108947381e7286a1274d660bf4906d72383a4f1 Author: Alan Garny Date: Sat Feb 19 02:04:36 2011 +0000 Added a toolbar for FileBrowserWindow (none of the buttons is active though). Moved the style sheet for QToolButton (originally in helpwindow.ui) to a resource file (OpenCOR.css) which is then applied upon starting OpenCOR. Updated the GUI for HelpWindow. commit a75287d0cba56db0227bc89693218f24b67cbc36 Author: Alan Garny Date: Fri Feb 18 19:12:31 2011 +0000 Since we haven'\''t managed to get scrollTo to work as expected, we need to call setExpanded. commit ecf5339f052341809059afad01072c7c386c6bc8 Author: Alan Garny Date: Fri Feb 18 18:28:56 2011 +0000 Added some comments on my failed attempts at trying to get the file browser to behave in the way I would like. commit f903c527e0e6da4074b751296ad691b9be49593c Author: Alan Garny Date: Fri Feb 18 15:40:43 2011 +0000 Keep track / retrieve, from one session to another, the directory/file that was selected in the file browser. commit d0f89ac8ecc73a17ec5847249a77a0d48fcd56ed Author: Alan Garny Date: Fri Feb 18 11:53:54 2011 +0000 Best practices compliance. commit b27032689fbe9b9f89193fcd8c2da33dbef9e109 Author: Alan Garny Date: Fri Feb 18 11:52:57 2011 +0000 Have the file browser start in the user'\''s home directory. Also have its columns resizing automatically based on their contents (not sure this is really what is best though!). commit 5ce9f499f9d04be10c9aff176f0dd63f3ad5f61b Author: Alan Garny Date: Fri Feb 18 10:50:29 2011 +0000 We don'\''t need a border for the file browser widget (since it inherits from QTreeView which does a good job of its own). commit ae7fc5c87c1550744c25228e17e69e8f2db591dd Author: Alan Garny Date: Fri Feb 18 10:46:17 2011 +0000 Added a new best practices rule (about always explicitly accepting/ignoring events), and made sure it'\''s followed. Did a bit of minor refactoring while at it. commit 72fb198210df71ac028c11b3e704421d6e9fce7c Author: Alan Garny Date: Thu Feb 17 16:38:52 2011 +0000 To have mFileSystemModel->setRootPath(QDir::rootPath()); will, on Windows, set the root path to C:\ and thus prevent us from sorting things properly, so clearly not what we want! So, back to mFileSystemModel->setRootPath("");! commit c3bcf914eb3d6cce50c99f9eb7ba44b974509bf4 Author: Alan Garny Date: Thu Feb 17 16:26:35 2011 +0000 Minor cleaning up. commit 4749d98bf9e7826d76252441efecfd62f36926a4 Author: Alan Garny Date: Thu Feb 17 16:07:39 2011 +0000 Removed the sample MathML equation, since we know the MmlViewerWidget class works fine. commit 5996df20f56b7917ded3dff7f97822a6f6cf869d Author: Alan Garny Date: Thu Feb 17 15:38:57 2011 +0000 Started work on the file browser widget. Can now display the full structure and specify the sorting informaiton (which is tracked/retrieved as necessary). commit 483b106c4eaf075a22520a461d37d74b0ab3f2a4 Author: Alan Garny Date: Thu Feb 17 14:47:14 2011 +0000 Wherever possible, use qobject_cast instead of dynamic_cast. commit 5e2a61882d1eeb8e74cec2656f1a839a52899157 Author: Alan Garny Date: Thu Feb 17 14:40:51 2011 +0000 Reinforced a use of qobject_cast. commit 6ae4813c74eb7cd8ee7578552ac665b77df8ca03 Author: Alan Garny Date: Thu Feb 17 14:39:30 2011 +0000 Some minor changes to respect our best practices rules. commit 15d5d8065a7a8dc8ca63d85f4d111ed4731a2fb6 Author: Alan Garny Date: Thu Feb 17 12:43:16 2011 +0000 Improved a piece of code. Have the file browser and file organiser widgets tabified. commit 18e7ccf0286dc7347fa0ac765fa224b3d99b33d3 Author: Alan Garny Date: Thu Feb 17 10:52:52 2011 +0000 Slight update to some user messages (incl. their French translation). commit 52db2253719f539fa63a1e4b424ca42211541395 Author: Alan Garny Date: Thu Feb 17 10:39:36 2011 +0000 Slight update to the developer-specific documentation. commit cc068f31e5ba99b4e79376752130ef37732d11f0 Author: Alan Garny Date: Thu Feb 17 10:29:41 2011 +0000 Minor updates to the documentation. commit ae423109730f9b31a698d311d16c769ea68d58e0 Author: Alan Garny Date: Wed Feb 16 21:31:32 2011 +0000 Improved the drawing of the border of a widget when on a window that is docked. This stems from the fact that the help widget (and probably other future widgets) would benefit from a top border on Mac OS X, and this at all times. Also added a new best practices rule about having the code fit within 80 columns whenever possible, and updated the code accordingly. commit af803ce9b25799dd11562bc8793b02ec6922d7ec Author: Alan Garny Date: Wed Feb 16 18:56:22 2011 +0000 Improved the cleanproj.bat file. commit d464ff02329fc0f4a053d2e015f4f87ce4d82547 Author: Alan Garny Date: Wed Feb 16 18:42:05 2011 +0000 Added a comment explaining the strategy used in the last commit. commit fd9c8148d125e323f76f86b86e65a26ff5ee8d69 Author: Alan Garny Date: Wed Feb 16 18:36:34 2011 +0000 Allow for the MmlWidget class to resize itself automatically and optimally. commit be9031f9f3a55d49bbb4da452094e6d8996b1ded Author: Alan Garny Date: Wed Feb 16 17:59:48 2011 +0000 Allow a CommonWidget object to have its border drawn if its parent is a QDockWidget object which happens to be docked. Indeed, should a QDockWidget object be docked, then no border will drawn (and can'\''t be drawn effectively) on Windows and Linux (there is one on Mac OS X), so the idea is to have the children of a QDockWidget object to have their border drawn if their parent is docked. commit 4da7d10527bbf0d073739c87722e1014c9ba492b Author: Alan Garny Date: Wed Feb 16 15:58:31 2011 +0000 Some cleaning up. commit 11a20604ac9648a20194756eb2c28e0572664d4d Author: Alan Garny Date: Wed Feb 16 15:00:56 2011 +0000 Slight update to a comment. commit 23a94dcc5e18376b84ea937f899cde73053dce85 Author: Alan Garny Date: Wed Feb 16 14:58:16 2011 +0000 Fixed and improved a few initialisation issues with some menu items. commit 01909a28457cc9bc9d59241b6785e2517fe51140 Author: Alan Garny Date: Wed Feb 16 14:07:11 2011 +0000 Renamed the command viewer window and widget. commit 2e49ae3227208df38ca1b2973037e74778ea2409 Author: Alan Garny Date: Wed Feb 16 13:20:18 2011 +0000 Use toLatin1 rather than toAscii (toAscii is the same as toLatin1, but only if no codec has been specified, which is the case by default, but you never know, so better be safe than sorry!). commit 08284560461faa6c4797499ec435b571dd629b7e Author: Alan Garny Date: Tue Feb 15 19:58:01 2011 +0000 Some cleaning up. Made the command viewer widget to inherit from QtMmlWidget, and added a sample equation to see that it is indeed working fine. commit 344163f2050cae7b31758633b8bcddfbf860e8df Author: Alan Garny Date: Tue Feb 15 18:44:30 2011 +0000 Respecting our best practices rules. commit 1ec2cb137751348f974f3a6d94852a956d4c29ef Author: Alan Garny Date: Tue Feb 15 18:37:38 2011 +0000 Change the default location of the different docking areas. commit 18b31f580b5bec346c12f149ccdef3ae12b6cd10 Author: Alan Garny Date: Tue Feb 15 18:23:14 2011 +0000 Added a command viewer window and widget. commit 57d7d95943cfac380ec52e5aad7cb734ffde0f62 Author: Alan Garny Date: Tue Feb 15 16:53:04 2011 +0000 Added a defaultSize method for the widgets. commit 22293a5d99b579e404cda19dacba734991f79d8f Author: Alan Garny Date: Tue Feb 15 15:39:43 2011 +0000 Added loadSettings and saveSettings to the CommonWidget class, and updated the rest of the code accordingly. commit abe562e8c131dae799620a96f4209ca273b49d08 Author: Alan Garny Date: Tue Feb 15 13:33:32 2011 +0000 Moved the organisation-specific widgets to their own folder. commit 3c6772c1c80ec4b32a9071d51352acbe12f7c309 Author: Alan Garny Date: Tue Feb 15 13:25:19 2011 +0000 Added the CommonWidget class which currently has only two methods: retranslateUi and defaultSettings. This class is used as a base class for all of our dock windows and their corresponding widget, if any. commit 4dab90f62f1bdd27dbc551266e1b7f61bc47e310 Author: Alan Garny Date: Tue Feb 15 11:56:49 2011 +0000 Renamed the Physiome Modelling Repository Client window to PMR Explorer window. Also made them visible within OpenCOR. Still need to create a super class to handle common features to our various dock windows. Indeed, for now, the defaultSettings method cannot be applied, meaning OpenCOR is currently '\''broken'\''. commit 2e441ff3d7a0f79a05764531ba4b9b878a0d290e Author: Alan Garny Date: Tue Feb 15 11:03:08 2011 +0000 Simple reorganisation of some code. commit b318069b8ef01ee7ffbe60f2db8ad84e16d72643 Author: Alan Garny Date: Tue Feb 15 10:39:55 2011 +0000 Oops, minor mistake in the documentation following the last commit. commit 89e41e0a3921e90bbd7d91dc3449945cc8e75dc6 Author: Alan Garny Date: Tue Feb 15 10:38:42 2011 +0000 Moved the organise windows to their own folder, thus making things a bit '\''cleaner'\''. commit e6cb01158a7f1e6cadb116fbcf43c6bc89a565ab Author: Alan Garny Date: Tue Feb 15 09:10:37 2011 +0000 Removed the icon associated with each dock window, since they don'\''t make use of it on either Windows, Linux or Mac OS X. commit 306403e3a8d1391cc8e8497b8cdf5b3fea7a1804 Author: Alan Garny Date: Mon Feb 14 19:38:06 2011 +0000 Minor update to the Reset All feature. commit 2ecd6099bcb0872cfbe9e9fabdf8295871a94346 Author: Alan Garny Date: Mon Feb 14 18:17:02 2011 +0000 Updated the three new widgets (might have to create a CommonWidget class to encapsulate some features common to all of our widgets), and created a corresponding window class for each of them. commit 7b9d05a975bcc1f951c4dd49045084e4c5dae581 Author: Alan Garny Date: Mon Feb 14 17:23:54 2011 +0000 Cleaned up src/ui/helpwindow.cpp. commit caf111e94f0b17f39ba42d38e6b6d538da3b7954 Author: Alan Garny Date: Mon Feb 14 17:15:55 2011 +0000 Created the skeleton of three new widgets: a PMR client (to access the CellML Repository), a file browser (to access local CellML files), and a file organiser (to organise our CellML files within OpenCOR). commit 75d0ba6af82ba368c6683f0fa76f20e8f58a6c1d Author: Alan Garny Date: Mon Feb 14 15:34:10 2011 +0000 Dealt with some warnings in the QtMmlWidget library. commit bad15e547bffda72677442362d43aab019431830 Author: Alan Garny Date: Mon Feb 14 15:06:36 2011 +0000 Slight improvement to the CMakeLists.txt file for the QtMmlWidget library. commit 0430d8eae44b36392943dc1090b49b4f86cb81e3 Author: Alan Garny Date: Mon Feb 14 14:41:13 2011 +0000 Remove our patch file from our copy of the QtSingleApplication library. commit 59b2b3e6af5f13ffdab700f305afbb16ec7f9094 Author: Alan Garny Date: Mon Feb 14 14:38:15 2011 +0000 Minor update to the Reset All feature. commit 1f69706076394b4ab302166ae0993fcbacc3935e Author: Alan Garny Date: Mon Feb 14 14:21:46 2011 +0000 Added the QtMmlWidget library. commit b0b7436c3a5126832cf6c2339296aa8d7a6a98aa Author: Alan Garny Date: Mon Feb 14 13:46:10 2011 +0000 Updated the documentation in preparation for the addition of the QtMmlWidget third-party library. Also, simplified the links to the OpenCOR code SourceForge. commit 4c76b77501e1d6bb8e4d18791d4e40cdcf391f36 Author: Alan Garny Date: Mon Feb 14 13:25:18 2011 +0000 Improved our use of HTML/CSS for the documentation. commit 7d3af1beff7840dc53b386180680786aea0d1cbe Author: Alan Garny Date: Mon Feb 14 12:52:47 2011 +0000 Ask the user to confirm the Reset All feature. commit 1a28076a3ad5c993eecc2a2bad390188f6649388 Author: Alan Garny Date: Mon Feb 14 12:01:45 2011 +0000 Reformatted the CSS code in the HelpWindow widget. commit c51c3d1e5b54219af75f091b1a07b70b79211e28 Author: Alan Garny Date: Sun Feb 13 14:06:15 2011 +0000 Minor reformatting. commit 29ddf7f390a98654dbba3cb11d028f2d26dc6aed Author: Alan Garny Date: Sun Feb 13 02:37:22 2011 +0000 Some cleaning up in the CSS. Also replaced #RRGGBB with rgb(RRR, GGG, BBB) for colours, since it'\''s easier to read/maintain. commit 014a7e0656ad6f2853fec5d61b70b0fc0bd47753 Author: Alan Garny Date: Sat Feb 12 19:01:36 2011 +0000 Reformatted the whole documentation (use lower-case for tags, attributes, etc.). commit 7f74f75ab05a09d7413e7ec1d7b8be44bbd15a6e Author: Alan Garny Date: Sat Feb 12 16:28:26 2011 +0000 Replaced our use of the BR HTML tag by the DIV HTML, since BR is about presentation as opposed to contents, which is what HTML code should be all about (presentation being decided through CSS). commit 4a09b8b4f99d74e4dd535cd5cd3482e38c312096 Author: Alan Garny Date: Sat Feb 12 16:19:02 2011 +0000 Replaced CSS bold code on the SPAN HTML tags by EM HTML tags. commit 312583504b7512d0f08b13818f3ddc2e0c9ea09c Author: Alan Garny Date: Sat Feb 12 16:10:51 2011 +0000 Replaced CSS italic code by EM HTML tags. commit 818f5f078c966feb6afd3859e2ba449368126a11 Author: Alan Garny Date: Sat Feb 12 00:24:12 2011 +0000 Slight improvement to the document (CSS style for the copyright). commit 3e4c584a11f1f97693b62fd403de1034a64b6d20 Author: Alan Garny Date: Fri Feb 11 20:46:16 2011 +0000 Removed the rounded corners in the documentation, since it really doesn'\''t look great on Mac OS X (pixelised!). commit 4a2cdb0e93dbd9e6e5fd1c5f6198a56512455f1d Author: Alan Garny Date: Fri Feb 11 18:49:28 2011 +0000 Might finally be done with the best practices document. Minor updates to the overall documentation. Removed some unnecesary include files. commit 094cef26af5f1f99e2abc63cdac965ab8ac0e4aa Author: Alan Garny Date: Fri Feb 11 16:47:42 2011 +0000 Added some more best practices rules, and updated the code a bit. commit d770f0d8b135558effbcf77adc37e4b32eb131a3 Author: Alan Garny Date: Fri Feb 11 15:28:34 2011 +0000 Some straightforward reformatting of the documentation. commit 440dcfe50384505618b1cfccc27664a5893a01e0 Author: Alan Garny Date: Fri Feb 11 15:05:27 2011 +0000 Some more information for the best practices document. commit 6d266fbf616c55a8b3565c3973094abbcf588b32 Author: Alan Garny Date: Fri Feb 11 14:49:15 2011 +0000 Added some more best practices rules, and updated the code accordingly. commit c59622664e6ca97a5c179f90d9d1b1b16fbf9b0d Author: Alan Garny Date: Fri Feb 11 11:48:25 2011 +0000 Reformatted the documentation a bit. commit 7aa86d1ef070510fc31e8ce354eba00a6b21b30c Author: Alan Garny Date: Fri Feb 11 10:54:36 2011 +0000 Some updates to the best practices document. commit 445ddc9726a2446fa2399b6590e11c1f494c0505 Author: Alan Garny Date: Thu Feb 10 19:06:49 2011 +0000 Added a couple of links to the developer documentation. commit 8026aad1222687f5ecee0641fa38aa3b94e51cf7 Author: Alan Garny Date: Thu Feb 10 19:01:07 2011 +0000 Slight improvement to the best practices document. commit fdd78bf5065c67082988b7fccc1405860fc77329 Author: Alan Garny Date: Thu Feb 10 18:26:30 2011 +0000 Added some more best practices rules. Updated the source code so that it respect them. commit 19971914c6407bffa44839c091c0d90348947367 Merge: 8dc277d73 531368ebb Author: Alan Garny Date: Tue Feb 8 18:35:18 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 8dc277d731708bb75aa8a8224b1e0c21dc0643ee Author: Alan Garny Date: Tue Feb 8 18:34:03 2011 +0000 Updated the best practices page, and modified the code to respect them. commit 9a7a8bceed7564f73fa6b4212574977463391c20 Author: Alan Garny Date: Mon Feb 7 18:19:53 2011 +0000 A few first rules for the coding style document. commit eea3dbce0b07cc93638c5cb9d829c538d786fe87 Author: Alan Garny Date: Mon Feb 7 17:35:07 2011 +0000 Updated the file structure bit of the best practices document. commit 531368ebb3fb0ebb34063104f218cbbfc4028786 Merge: aef460bc5 24a66e8dc Author: Alan Garny Date: Sun Feb 6 23:36:40 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit aef460bc54aea0770ea654e6372947f6d0452090 Author: Alan Garny Date: Sun Feb 6 23:36:08 2011 +0000 Removed an empty line in ui/mainwindow.cpp. commit 24a66e8dc0bab5cba023fa8ab3b12afb5af1b05a Merge: 3f03063dc 3d8dfd027 Author: Alan Garny Date: Sun Feb 6 18:10:10 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: doc/developer/bestPractices.html commit 3f03063dcc60f31bd2a2b76c03cfcfc3ab748365 Author: Alan Garny Date: Sun Feb 6 17:45:35 2011 +0000 Updated the developer docmentation. commit 3d8dfd02787ecea764823eed841a90be79517a33 Author: Alan Garny Date: Sun Feb 6 17:45:35 2011 +0000 Updated the developer docmentation. commit e8dcb44bf2987ca00cea632048889a1c994434d0 Author: Alan Garny Date: Sat Feb 5 19:08:34 2011 +0000 Added a couple of translations. commit 0ce32ce5364bdbfeb37b6854fca62e55d20a3720 Author: Alan Garny Date: Sat Feb 5 16:56:37 2011 +0000 Improved the stylesheet for the buttons in the Help window. commit 444f1cfcd4b1eae6c29a4d15c1c020ead8c9c0ea Author: Alan Garny Date: Sat Feb 5 16:11:45 2011 +0000 Minor update to the main window UI file (after noticing that there is a context menu that can be shown when right clicking within the toolbar area, and blank menu items were shown for the File and Help toolbars). commit bdb9ad885f3fdd00a6c50e79de129cc5887b3e22 Author: Alan Garny Date: Fri Feb 4 19:17:05 2011 +0000 Minor update to the documentation. commit db29506c6736c50ee624224d6596e22beaa8abfa Author: Alan Garny Date: Fri Feb 4 18:40:30 2011 +0000 Updated the user documentation, since the help buttons look fine now on Linux since we applied our style sheet code. commit 0224a1a41d77fe2a7bcf300b05510199bf29d315 Author: Alan Garny Date: Fri Feb 4 18:37:04 2011 +0000 Toying with the dropping of files on OpenCOR. commit b95ba3eaaf904fe33e21a7ae51c2db461a8581a0 Author: Alan Garny Date: Fri Feb 4 16:41:08 2011 +0000 Minor update to cleanproj for Mac OS X. commit 287715a4d6dc47bf0c2b7a43994d149dc64e8609 Author: Alan Garny Date: Fri Feb 4 16:00:31 2011 +0000 Minor fix to the cleanproj[.bat] files (didn'\''t take into account the _CPack_Packages folder which gets creaked when packaging OpenCOR). commit 57aafd0e6c573c1601560ecd7698097b2f9ce4ee Author: Alan Garny Date: Fri Feb 4 15:42:02 2011 +0000 Updated the developer documentation as a result of the previous commit. commit 6c4f51a295101cd5240fbe6332d9371133a657ef Author: Alan Garny Date: Fri Feb 4 15:40:30 2011 +0000 Finally figured out what was wrong with running OpenCOR on Mac OS X and resulting in several messages being displayed about OpenCOR loading two different sets of Qt binaries. Basically, it was '\''just'\'' a matter of letting the SQLite plugin know that it should use our embedded version of the Qt binaries rather than the one installed on someone'\''s system. For this, one must use the install_name_tool command with the -change option. commit 536ce9b850ef97ec18fb9a75d05a1e6c33e221f6 Author: Alan Garny Date: Fri Feb 4 14:57:54 2011 +0000 Added some style sheet code for the help buttons (since it really looks ugly on Mac OS X). Note that, when pressed, the image on the button shouldn'\''t move '\''down-right'\'' (unlike on Windows and Linux), which seems to be the expected behaviour on that platform. commit 491bcaa290cbde162801ab629b31cf60c336dc8b Author: Alan Garny Date: Fri Feb 4 12:16:31 2011 +0000 Updated the execution bit of cleanprojall. commit e559f3ef345835014ebd51aba2ecbb076951cbb1 Author: Alan Garny Date: Fri Feb 4 12:13:15 2011 +0000 Done with implementing an '\''optimised'\'' build environment where one can decide to clean only OpenCOR'\''s files or also the third-party libraries'\'' files. commit 907dea79688161a25fe2883a660a36b2854eb6b4 Author: Alan Garny Date: Fri Feb 4 11:41:12 2011 +0000 Updated the packageproj[.bat] files. commit e21719ccdd09506e274002659fbfbc5f820fce77 Author: Alan Garny Date: Fri Feb 4 10:39:50 2011 +0000 Added a new set of batch/shell files/scripts aimed at cleaning all of the OpenCOR environment (i.e. including third-party libraries). commit 82d0e5760f1fd3f6b3655d93c201fbbc8c5afffd Author: Alan Garny Date: Fri Feb 4 10:10:12 2011 +0000 Renamed the batch/script files in the view of optimising the build system. commit 04c8340bee628ff8ad62099782b792412dd4e5be Author: Alan Garny Date: Fri Feb 4 10:02:29 2011 +0000 Added a comment to the main CMakeLists.txt file. commit 28b2ebab0110551d4665a9c2b8ba74dec59d8307 Author: Alan Garny Date: Thu Feb 3 19:48:20 2011 +0000 Updated the help and, in particular, the developer one to discuss the messages that get generated when running OpenCOR on Mac OS X. commit 04054adfc9f6d009370eeea36e9d2c647d3169e9 Author: Alan Garny Date: Thu Feb 3 17:42:58 2011 +0000 Updated a comment in the main CMakeLists.txt. commit 94a70148590d5c6b415c8a4c66c8ecc8d8141b9b Author: Alan Garny Date: Thu Feb 3 17:33:30 2011 +0000 Slight improvements to the main CMakeLists.txt file. commit bd2bdf2d3cb402c3eb3cc81c788046f26fed5b68 Author: Alan Garny Date: Thu Feb 3 13:00:06 2011 +0000 Removed an unnecessary connection for the status bar. commit 39d75cc58076deeb215d7835692b11e613e04491 Author: Alan Garny Date: Thu Feb 3 12:54:08 2011 +0000 Added a way to show/hide the status bar (trying to offer a means to the user to have as much screen estate as possible). commit dcea1e8535283fc35dce76cb487b25707cf6597d Author: Alan Garny Date: Thu Feb 3 11:54:53 2011 +0000 Can now switch to / back from full screen mode. commit 44f4ae4e383b3f415889f2fd5158daae71b99173 Merge: f52dc87e3 aa490e605 Author: Alan Garny Date: Thu Feb 3 09:19:58 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit f52dc87e3c7cf67236af004fb5c95b4caf30df73 Author: Alan Garny Date: Thu Feb 3 09:13:55 2011 +0000 Added a background image (the CellML logo) to the central widget. commit aa490e60518a74632eefbf5cf2841973de551206 Author: Alan Garny Date: Wed Feb 2 21:05:00 2011 +0000 Minor update to MainWindow::notYetImplemented. commit 4e0692b7146f4129f1eb44f0217b83261194864e Author: Alan Garny Date: Wed Feb 2 18:59:13 2011 +0000 Oops, I was messing around the central widget and forgot to save the .ui file before committing! commit a333835fc7af8a9e334b679df089f7c65261e5a0 Author: Alan Garny Date: Wed Feb 2 18:58:06 2011 +0000 Added a central widget which will be used as a... central widget! commit 5a6dc6ca68c4453bbc14979227de0342264afbe9 Author: Alan Garny Date: Wed Feb 2 18:03:43 2011 +0000 Updated the Help toolbar. commit d2fc20decf7e8adc47dc5823845ca5976340228c Author: Alan Garny Date: Wed Feb 2 17:57:41 2011 +0000 Had missed one translation. Updated another translation. commit 467d942d7310002b336fd79ed0a7d35f79c31e55 Author: Alan Garny Date: Wed Feb 2 17:53:34 2011 +0000 Added a file toolbar. commit 65f2a21390489fc240a7bf11bf4202af3d804660 Author: Alan Garny Date: Wed Feb 2 17:06:19 2011 +0000 Added the QScintilla library. commit 51dc0fb3559ea8e86a3c12253ba91c69e4e0dd15 Author: Alan Garny Date: Wed Feb 2 14:37:28 2011 +0000 Simple aesthetic clean up. Added a known '\''issue'\'' to the user'\''s documentation. commit 360499e9f3ad8c3513ddeb9f7b8cde29995efa10 Author: Alan Garny Date: Tue Feb 1 18:08:32 2011 +0000 Forgot the Qt bug that forces one to hard code the iconVisibleInMenu property so that it can work fine on Linux (and maybe also on Mac OS X). commit e472167afcfa4deee33e97b3d8a3775b08aa626b Author: Alan Garny Date: Tue Feb 1 18:05:04 2011 +0000 Added a few menu items to the File menu. commit 582cc1b1268fd1381cac2c4105e65f097e342d75 Author: Alan Garny Date: Tue Feb 1 15:21:48 2011 +0000 Fixed a small issue with the help (which got introduced when renaming user/knownIssues.html to user/knownIssuesAndLimitations.html. commit 65c8837d946a7fa3ab4d6095a912e2926c688e12 Author: Alan Garny Date: Tue Feb 1 13:23:56 2011 +0000 Minor fix the locale change handling. commit 14ca747f60636a6223ade0b4d3d543d8a2b8f48f Author: Alan Garny Date: Tue Feb 1 11:41:18 2011 +0000 Added support for the use of the system'\''s language as the language to be used by OpenCOR. Updated the documentation to mention something about the language used by OpenCOR. commit b042c92908f63e512e5265b77c2c342978228a2d Merge: baf97b33c 811605582 Author: Alan Garny Date: Mon Jan 31 18:18:20 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit baf97b33c0326867b16965ee04b1e95dc7e01d5a Author: Alan Garny Date: Mon Jan 31 16:44:21 2011 +0000 Removed any reference to a "name of the organisation". Also added the Qt French translations as a resource to OpenCOR. (Still can'\''t get Qt-specific things to translate though! :s) Edit: the reason I couldn'\''t get Qt-specific things to translate is because I was testing with a QFileDialog and, by default, thise makes use of the native file dialog window which language cannot be translated by Qt. If one really wants to use a translated version of the file dialog, then we must use the Qt version of that dialog by specifying the QFileDialog::DontUseNativeDialog option. However, this looks rather ugly on Windows 7 ('\''ok'\'' on Linux and not sure on Mac OS X). So, bottom line: we leave things as they are. If there is something Qt-specific that can be translated, then great otherwise tough... for now at least. commit 811605582db6d02e7431b5daeef22135ba8075d9 Author: Alan Garny Date: Mon Jan 31 16:44:21 2011 +0000 Removed any reference to a "name of the organisation". Also added the Qt French translations as a resource to OpenCOR. (Still can'\''t get Qt-specific things to translate though! :s) commit 301851b6f7c6e8972359374a2d672a9b7ab8876f Author: Alan Garny Date: Sun Jan 30 14:38:32 2011 +0000 Added an about option for the console version of OpenCOR. commit 19f1544e73eca01ed982f182a31ef67fafa47cf3 Author: Alan Garny Date: Sun Jan 30 13:09:25 2011 +0000 Implemented a safeguard mechanism preventing us from accidentally running a non-renamed (to '\''.com'\'') version of the console version of OpenCOR. Indeed, this used to keep recalling the console version (since we assumed the console version had an extension of '\''.com'\'' and we were therefore launching the '\''.exe'\'' version of OpenCOR, which happened to still the console version, hence the vicious circle in which we were...). commit 3aa2b13921ce72786a39a53f9eaf8ff12c1e6c7f Author: Alan Garny Date: Sun Jan 30 12:39:21 2011 +0000 Aesthetic change to winConsole/CMakeLists.txt. commit 2167cb02984a9bf92869877f015fb158403bffc7 Author: Alan Garny Date: Sun Jan 30 12:38:15 2011 +0000 Minor problem with the setting up of link flags properties on Mac OS X (and probably on Linux too). commit 9c86b677419a6cc74df770d651443871ad1985f0 Author: Alan Garny Date: Sun Jan 30 12:32:42 2011 +0000 Can now display OpenCOR version information (at the console level). commit b74bf4a9f46f16a55929f0ae381353647b8a7ba3 Author: Alan Garny Date: Sun Jan 30 12:21:44 2011 +0000 Now make use of initApplication (the initialisation code we moved to src/misc/common.[cpp|h])! commit 6ab09325eb3de2f9ccd7049a489581591a69c168 Author: Alan Garny Date: Sun Jan 30 12:05:24 2011 +0000 Renamed src/misc/console.[cpp|h] to src/misc/common.[cpp|h], and moved some common (for the console and GUI version of OpenCOR) initial setting up code there. commit f05cc9db23af810498b31c8a06355705612ddac4 Author: Alan Garny Date: Sun Jan 30 12:02:51 2011 +0000 Fixed a small issue with the link flags properties in our main CMakeLists.txt file. commit f60338aafc66b7bed4f9c8d5bfd2dee9080908b9 Author: Alan Garny Date: Sun Jan 30 01:15:47 2011 +0000 Minor change to the CMakeLists.txt file. commit 848aeec38ccff9b824e5a916e1efa8eadc83f669 Author: Alan Garny Date: Sun Jan 30 01:08:05 2011 +0000 The -Wl,-s linker option is now obsolete on Mac OS X, so removed it for that platform. commit d412c586d49d80857cfb38bd58880c9370f774cc Author: Alan Garny Date: Sun Jan 30 00:53:56 2011 +0000 Finally found what used to make the .com (consolve) version of OpenCOR so damn big (the symbols were all included!). Also improved the cleanall.bat file. commit 935c516ec9ad7c8801254e5a2f622c07eb8bf617 Author: Alan Garny Date: Sat Jan 29 23:34:55 2011 +0000 Minor updates to the [winConsole/]CMakeLists.txt files. commit 57fd30fb010dc3f279a7acb376d5e0bf5fd4220a Author: Alan Garny Date: Sat Jan 29 23:10:31 2011 +0000 Slight overlook in the list of header files in the CMakeLists.txt file. commit 961d972724b23c4c45e991fe2fa1e968ad092af6 Author: Alan Garny Date: Sat Jan 29 23:04:28 2011 +0000 Minor updates to the cleanal[.bat] files, as well as the makeall.bat and run.bat files. commit cad3c213fa4fa4fb103966c17db78fa132ab219a Author: Alan Garny Date: Sat Jan 29 18:11:46 2011 +0000 Some minor changes. commit 88b128fe5d67942d6d265ae861ecddd35aa973ab Author: Alan Garny Date: Sat Jan 29 15:21:39 2011 +0000 Updated the packageall[.bat] files as a result of renaming the buildall[.bat] files. commit bf5c750b2328f6cfe307731b5926d39d6b3a2fb6 Author: Alan Garny Date: Sat Jan 29 15:20:55 2011 +0000 Renamed the buildall[.bat] files and updated the documentation accordingly. commit a2e84132f9d0326a6f8ccaf7297dc0680c897c60 Author: Alan Garny Date: Sat Jan 29 08:39:16 2011 +0000 Further cleaning up of CMakeLists.txt files. commit b82def0966e467371de31f85102817f26b5d66e1 Author: Alan Garny Date: Sat Jan 29 08:08:41 2011 +0000 Minor cleaning up of the CMakeLists.txt file now. commit 8cb4e9ab2090c9c33c26afa84f7aa63a894ed508 Author: Alan Garny Date: Sat Jan 29 08:00:46 2011 +0000 Minor cleaning up of the winConsole/CMakeLists.txt file. commit 62f9df5cc481acb92413e9c06fb3757ebde9def9 Author: Alan Garny Date: Fri Jan 28 21:36:35 2011 +0000 Minor updates. commit 37d7fe8be9c85afdae398784e7f9a11d2debc8a9 Author: Alan Garny Date: Fri Jan 28 20:43:43 2011 +0000 Now package (on Windows) the .com (console) version of OpenCOR, as well as OpenCOR.bat. Next, we will have to find why the console version of OpenCOR is so damn big (3.6MB!). commit b0abc843b1d1b6bdcc137b14049287523c94a3a7 Author: Alan Garny Date: Fri Jan 28 20:29:51 2011 +0000 Remembered the '\''proper'\'' way to use ADD_CUSTOM_COMMAND, so now can make the move of the console version of OpenCOR to the main build folder using CMake (as opposed to through using buildall.bat). commit b0d5df59ce3a29dadb20af71c112aa3db6f981f2 Author: Alan Garny Date: Fri Jan 28 20:16:21 2011 +0000 Slight update to the developer documentation (as a result of run.bat having been added). commit 632d991be28af93db329ad7ea9b4221a9f739686 Author: Alan Garny Date: Fri Jan 28 19:59:26 2011 +0000 Can now move the .com (console) version of OpenCOR to the main build folder. Note that we do this within the buildall.bat file as it doesn'\''t seem possible through CMake (I tried ADD_CUSTOM_BUILD with POST_BUILD, but to no avail). Also created a run.bat file so that we can run OpenCOR from an existing console window. Indeed, to use run.vbs will create a new console window, so... commit 58fb383600cb0eb56160a9a533d6c4c10b680454 Author: Alan Garny Date: Fri Jan 28 19:06:23 2011 +0000 Fixed a few remaining renaming issues (cmdLine to console). commit 7fa97b5696a31f46f6c30388d43c2f971998fa72 Author: Alan Garny Date: Fri Jan 28 19:01:50 2011 +0000 Oops, messed the winConsole/CMakeLists.txt file at some point! commit d8798e0fcf482ba5ee1f3ca0fbe772a6d3bf9c36 Author: Alan Garny Date: Fri Jan 28 18:59:39 2011 +0000 Renamed the winCmdLine folder to winConsole. commit de662f3d8861369753f9ea3ddef2165a680ac196 Author: Alan Garny Date: Fri Jan 28 18:56:54 2011 +0000 Renamed command line to console everywhere, except for winCmdLine which will be done next. commit 4a380b958029e2d57ee6808254eb39a43fb37221 Author: Alan Garny Date: Fri Jan 28 17:58:47 2011 +0000 Can now build a console application. commit c20c7a1189f0729fae53c0a91357c36daa8bdd90 Author: Alan Garny Date: Fri Jan 28 17:44:41 2011 +0000 Can now generate a command line version of OpenCOR, but it doesn'\''t work (!!) and still needs to be renamed to .com and then moved to the main build folder. Also, we need to include it to the Windows packaging. commit 7e1e694dfec15aad332a00a941040d6954601433 Author: Alan Garny Date: Fri Jan 28 16:30:57 2011 +0000 Minor improvements to the command line options stuff. commit a97107ba421a36492975021765b2741f09c7d96e Author: Alan Garny Date: Fri Jan 28 16:05:26 2011 +0000 Argh, I was developing on Windows and hadn'\''t got a chance to test on Linux. Now that it'\''s done, I had to fix a couple of minor issues. commit 2fcb6dd0f676b6b0e7b474cd08cedae1e336b4fd Author: Alan Garny Date: Fri Jan 28 16:02:34 2011 +0000 Finally found a way to make OpenCOR both a console and a GUI application on Windows (not a problem on Linux and Mac OS X), so working towards that. commit 76fed28ec025f7c1064511a7e06e1f039fe82261 Author: Alan Garny Date: Fri Jan 28 10:22:21 2011 +0000 Some minor cleaning up. commit c8836fbc3eb80460c18e668ac4c7518fdd8dcc21 Author: Alan Garny Date: Wed Jan 26 15:59:52 2011 +0000 Some very minor cleaning up. commit 7a916f0ff771025bf39802e3233714192dd179e2 Author: Alan Garny Date: Tue Jan 25 16:46:26 2011 +0000 Updated the QtSingleApplication tree. commit ef8e42e8d752ff8a1ec8fb2e5ce28e4eedf661a2 Author: Alan Garny Date: Tue Jan 25 16:32:08 2011 +0000 Some cleaning up. Set up the orgnization name at the application level. commit 793f7a4796dac0379e17f7fed466ad5ef0d0bb37 Author: Alan Garny Date: Tue Jan 25 16:25:55 2011 +0000 Now use the QxTemporaryDir from the LibQxt library, rather than '\''hacking'\'' our own solution around QTemporaryFile. commit 6326f6369f8de38c3196feb29146f5d442daac38 Author: Alan Garny Date: Tue Jan 25 14:53:49 2011 +0000 Slight improvement to our use of the LibQxt library. commit 4f7892c4fc5a9d5c465e809ba1afed48742bd721 Author: Alan Garny Date: Tue Jan 25 13:37:04 2011 +0000 Added the QxtCommandOptions class from the LibQxt library. Updated the main CMakeLists.txt file as a result of it, as well as the developer documentation. commit 29039624c70f02195598399a11e03643574b2912 Author: Alan Garny Date: Tue Jan 25 12:09:03 2011 +0000 Cleaned up the QtSingleApplication/CMakeLists.txt file. commit 1c08747bf29734dd4c82d0f1ee9f676c28a318a6 Author: Alan Garny Date: Mon Jan 24 13:01:06 2011 +0000 Updated the shell scripts that call OpenCOR, so that they support the passing of arguments to OpenCOR. commit 2a1ec0c97e8e011cc2f9eb04763128fd320c1608 Author: Alan Garny Date: Mon Jan 24 12:44:35 2011 +0000 Updated the VBScript files to run OpenCOR, so that they now support arguments that are passed to OpenCOR. commit 314e725be1ab566f4c0931ac65990fc82cf17c3f Author: Alan Garny Date: Mon Jan 24 11:49:32 2011 +0000 Updated the information about the command line feature for OpenCOR. Also added some information about the multi-cellular feature which would be nice to have in OpenCOR at some point. commit e8c643174d947d20cfc568491a95acb1f25a4c40 Author: Alan Garny Date: Mon Jan 24 11:12:02 2011 +0000 Slight update to the developer'\''s miscellaneous documentation page. commit b1c0d0db0184b9bab39d24ac13214c86eb28508b Author: Alan Garny Date: Mon Jan 24 11:08:50 2011 +0000 Renamed the scrapbook.html file to miscellaneous.html, since scrapbook is definitely the wrong wrod for what it is meant to be. commit 7cf6c82475aaf89ccf61b21f7b78e5c2fc9cd0a4 Author: Alan Garny Date: Mon Jan 24 07:53:01 2011 +0000 Minor update to the developer'\''s documentation (scrapbook). commit 47c59bbc8079522bac230cfb463820a7c057cc66 Author: Alan Garny Date: Sat Jan 22 17:44:07 2011 +0000 ... and yet some minor (HTML) updates to the help files. commit 540f54795c3352c4f2046c9140e670f2fea20972 Author: Alan Garny Date: Sat Jan 22 17:25:35 2011 +0000 Some further minor (HTML) updates to the help files. commit 25050e18eb96b179550c8aea4e2fdb9ee65234ca Author: Alan Garny Date: Sat Jan 22 16:44:11 2011 +0000 Minor (HTML) updates to the info files. commit 26cc86ef2bcf9011db40daa75b74879e3585628f Author: Alan Garny Date: Fri Jan 21 18:07:23 2011 +0000 Updated the developer documentation. commit 63ab062d9cb4ab8cb460d4f22a9ea3d0a67a3e72 Author: Alan Garny Date: Thu Jan 20 18:46:34 2011 +0000 Added some template developer documents which will get populated later on. commit 411f29f0eab456f6da41966922f3118bc7bf3682 Author: Alan Garny Date: Thu Jan 20 17:47:51 2011 +0000 Minor reformatting. commit 2f1da1844e7fa1995400506ed76a34e279c4ed76 Author: Alan Garny Date: Thu Jan 20 17:42:59 2011 +0000 Huge commit, i.e. something that should never have happened! Anyway, re-allowed text selection in the help window (after all, we may, in the future, provide information that the user may want to copy/paste, so...). Updated the help window to support the text selection, and added a context menu. Reworked (and made cleaner) the code for the restart of OpenCOR (which happens as a result of a reset all). Various cleaning ups (e.g. initialize all class members). Commented the code as much as possible (this should become good practice!). commit 1cfc907efb31213d1c36a0728a929ff46d8c0552 Author: Alan Garny Date: Thu Jan 20 11:09:01 2011 +0000 Updated the flag icons. commit 7ad749c2da734ed9dfb8025e27483c24b6b587b9 Author: Alan Garny Date: Wed Jan 19 20:49:32 2011 +0000 Rearranged the help files, so that we now have a user section and a developer section, of which only the former is deployed with OpenCOR. commit 85af639e1f4452c17abf2a102c0f2afc0eb5fc3f Author: Alan Garny Date: Wed Jan 19 20:20:32 2011 +0000 Removed the need for translations in the help widget. Inded, this proved to be a bit tricky and, in the end, unnecessary to translate (since the end user should never see the error message that results from an unevailable help page), so... commit 2732190c2ed90a75ad6a12bc0500a13ea39a1843 Author: Alan Garny Date: Wed Jan 19 17:42:17 2011 +0000 The translation of the help window resulted in the '\''toolbar'\'' buttons being wrongly enabled or disabled, so upon translation we now make sure to reset the enabled state of the various actions on which the '\''toolbar'\'' buttons rely. commit 53c4be5cb808cc30dc77d60efa7745c2d44cac86 Author: Alan Garny Date: Wed Jan 19 17:33:05 2011 +0000 Addressed a small issue related to the restart of OpenCOR following a reset all. commit e957401deafb7254acd2645c84b2e6ed4a19c6cd Author: Alan Garny Date: Wed Jan 19 17:09:09 2011 +0000 Updated the French translations. Also made sure that obsolete translations get removed. commit 005f3bd423c694f19cb9833875a73140f0597aa5 Author: Alan Garny Date: Wed Jan 19 16:58:56 2011 +0000 Ensure that the help window also gets translated. Added the remaining French translations. commit 775758d2c05042d6d99c80859a5b140f432303e8 Author: Alan Garny Date: Wed Jan 19 16:09:10 2011 +0000 Moved the translators to the MainWindow class (as opposed to declaring them in main.cpp and passing them to the MainWindow class). commit bed88f14250b1608093706e1357e2d5fb0b4d5bb Author: Alan Garny Date: Wed Jan 19 16:01:51 2011 +0000 Added a few more French translations. commit 250d7dd36ecd5d73e46e91562f280fc3f959337a Author: Alan Garny Date: Wed Jan 19 15:44:08 2011 +0000 Finally spotted what I had missed for the translation to work! commit cb0dcd78f44baac8540242a374df75493fe112bb Author: Alan Garny Date: Wed Jan 19 15:17:43 2011 +0000 Renamed the French translation file (see previous commit). commit 3c67d1eb45fae574f7f8680bf2cdad985750bb25 Author: Alan Garny Date: Wed Jan 19 15:16:25 2011 +0000 Just realised that Qt translation files use "_fr" (as opposed to, say, "_Fr") and that, therefore, on Linux / Mac OS X, this causes problems (because of the case sensitiveness of filenames on those systems), so... reverting a few things... (Another commit will follow from Linux to have the translation file renamed, since it can'\''t be done on Windows -- because of the non case sensitiveness of filenames on that system). commit 78e466378345d0f07a716b93433df2b5e3968831 Author: Alan Garny Date: Wed Jan 19 15:06:11 2011 +0000 Updated the CMakeLists.txt file. commit ce8d4fb517eb3f37e65b512b72d9265af04089ab Author: Alan Garny Date: Wed Jan 19 15:00:38 2011 +0000 Argh, something I undid in earlier commit was actually very much necessary! commit ba5df88004e772fa720f93fb8cd9b01c1de4be4e Author: Alan Garny Date: Wed Jan 19 14:55:01 2011 +0000 Trivial update to the CMakeLists.txt file. commit d1eb176374307be200562c663a9bfb9065587e7c Author: Alan Garny Date: Wed Jan 19 14:19:38 2011 +0000 Some cleaning up. commit 0cc8d58a91a85174da188d6356c631c4925c358d Author: Alan Garny Date: Wed Jan 19 12:18:06 2011 +0000 Various cleaning ups. commit ba76aee53055e1706fee6e8f03215a0642e8941e Author: Alan Garny Date: Wed Jan 19 12:08:21 2011 +0000 Fixed a small issue with our resource file (as a result of renaming the French translation file). commit 88849668b8c650c2cdcfeb5dede65e9ab639219a Author: Alan Garny Date: Wed Jan 19 12:01:23 2011 +0000 Some more cleaning up of the CMakeLists.txt file. commit 97da785ef70d220cc6225fbadb90f3e841b3009a Author: Alan Garny Date: Wed Jan 19 11:51:12 2011 +0000 Added the original language for the French translation. commit 5863b348b17c0373e02a578fab8f143beef0bae7 Author: Alan Garny Date: Wed Jan 19 11:23:09 2011 +0000 Cleaned up the CMakeLists.txt file (some variable names were unnecessarily complicated). commit 838cdfeafc6ce232a3652e2dec3f2ec18ec2a51a Author: Alan Garny Date: Wed Jan 19 11:10:20 2011 +0000 Reworked some of the locale code. Some cleaning up. commit aaa7d3e05487aedb4b7c926c98d0dc32a22683df Author: Alan Garny Date: Wed Jan 19 11:08:06 2011 +0000 Renamed the translation file. commit 9a2920dfba2ce0fdd66a5f2dc0b6a9769a50d15a Author: Alan Garny Date: Tue Jan 18 20:22:32 2011 +0000 Fixed a small issue with doing a reset all (and therefore restarting OpenCOR) on Mac OS X. Some cleaning up. commit 61e38b0eb7856b987dbf56ccd1a512d889e1a492 Author: Alan Garny Date: Tue Jan 18 18:59:46 2011 +0000 Further work on the internationalisation bit. Various cleaning ups. commit dfc7b3df318f15accdf9e946760ea7fdbb82e489 Author: Alan Garny Date: Tue Jan 18 16:55:30 2011 +0000 Still working on the internationalisation bit. commit 2caf1dc0a8d4fbb8aeba1d7eee7cc9132443c94d Author: Alan Garny Date: Tue Jan 18 16:13:29 2011 +0000 Started work on internationalisation. commit 1b59f06efcdc30c464e7fb6857579a87e454eb40 Author: Alan Garny Date: Tue Jan 18 15:29:29 2011 +0000 Added a scrapbook to the developers section of the help. Various help-related improvements. commit 8ac727acc55a91e62ddcfc295e233ac9b0259e8f Author: Alan Garny Date: Tue Jan 18 12:52:19 2011 +0000 Reorganised the help file a bit. commit dc23e99b36431632ac1b5d16dbb36669cbdc293b Author: Alan Garny Date: Tue Jan 18 10:55:49 2011 +0000 Found a way to '\''properly'\'' restart OpenCOR (as a result of a reset all). commit 56f8fce3c6d53deb1ba22ae65f47f34e47dbdc68 Merge: b762ef0e3 725d8073a Author: Alan Garny Date: Mon Jan 17 19:01:39 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit b762ef0e3a4cc4a6a7a002b7f82b978cc75da0b0 Author: Alan Garny Date: Mon Jan 17 17:47:30 2011 +0000 Move the no text selection style (for the help) into a resource (a bit neater and should work for text files too, should we ever have some in the help). commit d40216ce3485e23c9cb2bba3c35e9a659a7cb98d Author: Alan Garny Date: Mon Jan 17 16:53:16 2011 +0000 Minor '\''improvement'\'' to the name of the temporary folder. commit 455cae7a2e6565ad42cb3b7597fb6e9e6f7bea98 Author: Alan Garny Date: Mon Jan 17 15:46:58 2011 +0000 Changed the detault layout of OpenCOR by having the help docked to the main window (as opposed to having it floating). Looks more '\''integrated'\''. As a result, we had to find a way to get the reset all feature to work '\''properly'\''. Indeed, the dimensions of the docked help window wouldn'\''t get reset. The way around this was to have OpenCOR automatically restarted after clearing the user settings. There is, however, one big downside to this solution at the moment: QWebView doesn'\''t render things properly anymore. Surely, there must be a way to get that to work...?! commit 9453904d511113e6e5cda629d1cc3b12865183ec Author: Alan Garny Date: Mon Jan 17 15:32:49 2011 +0000 Default size for the help widget. commit 725d8073a33bd0616104aec934f6fae63e96377b Author: Alan Garny Date: Sun Jan 16 15:32:06 2011 +0000 Minor refactoring. commit 79d00b4361bacf899818e2b18b729ee77b94fde0 Author: Alan Garny Date: Sun Jan 16 00:39:16 2011 +0000 Cosmetic change to the run[.vbs] files. commit e25a4fb99c1f9208675044dc0df5f39f14729ca0 Author: Alan Garny Date: Sat Jan 15 16:57:24 2011 +0000 Some cleaning up. commit c4bd32cd183352159e1ff1e80f1841c004c9a44a Author: Alan Garny Date: Sat Jan 15 16:32:25 2011 +0000 Improved the GUI side of the help window (by enabling/disabling the homepage button when appropriate). commit 0b131d7e97d4f3f7fdd637f03f3965915faa27a4 Author: Alan Garny Date: Sat Jan 15 15:16:11 2011 +0000 Slight improvement to the help window. Also makes the help window visible by default (this could be useful for someone who uses OpenCOR for the first time). commit 4d0516ced2ac7e4008e4d2750e855fd76afd8229 Author: Alan Garny Date: Sat Jan 15 01:56:11 2011 +0000 Slight improvement to the GUI side of the help window. commit 53e4c67c933366fa460eed32d7338429e50d4501 Author: Alan Garny Date: Fri Jan 14 20:43:36 2011 +0000 Updated the about box. commit fb6e839e6ff7cc9cdc187a808ed21411b896f79c Author: Alan Garny Date: Fri Jan 14 19:30:54 2011 +0000 Forgot to update the cleanall[.bat] files. commit 12721d9642d396454583372c4ec4948c26fbbf29 Author: Alan Garny Date: Fri Jan 14 19:28:15 2011 +0000 Improved the version the version of OpenCOR is handled, i.e. directly within CMakeLists.txt, as it should, rather than in a version file, as it was done before. commit c4fbc59fc3ff1344bca71547fc4805fe64e4934f Author: Alan Garny Date: Fri Jan 14 19:13:59 2011 +0000 Slight improvement to the help widget. commit dcc73fd2d02d68404504511ad892b2d3f3b6eeb6 Author: Alan Garny Date: Fri Jan 14 19:08:01 2011 +0000 Improved the handling of the zooming in/out within help window. commit 3b890a284abad1a0be4a01240c4a9885b387913f Author: Alan Garny Date: Fri Jan 14 17:16:06 2011 +0000 Added the build information to the help (under the programming section). Various updates to the help in general. Added a way to retrieve the default zoom for the help. commit 717de493284bf7d0ddfeecef9d9c0d29ca09f8c9 Author: Alan Garny Date: Fri Jan 14 15:15:03 2011 +0000 Updated the CMakeLists.txt file. Updated and restructured the help. commit d60d35848ac1ce87a58b1c483ef6bc9a53478f3b Author: Alan Garny Date: Fri Jan 14 15:03:20 2011 +0000 Renamed a file. commit 5a6cb955dc780633fa0c304021dde2217d848e42 Author: Alan Garny Date: Fri Jan 14 13:19:06 2011 +0000 Added zoom in/out buttons to the help window. commit 4500a69e3c46381694f3c235c677cd17d887b417 Author: Alan Garny Date: Fri Jan 14 12:28:19 2011 +0000 Reworked the help window by making use of actions (i.e. the '\''proper'\'' way of doing things). commit 550c789de42b1beffb35267af7eb821bb93de1e0 Author: Alan Garny Date: Fri Jan 14 11:34:17 2011 +0000 Re-allowed the text selection of a web page (since a user may need that after all). Re-allowed the opening of external URLs in the user'\''s default web browser (probably better indeed to keep in the help window only things that are part of OpenCOR itself). commit 3fcda688b945269e282d4ca1f797e20cf30b4374 Author: Alan Garny Date: Fri Jan 14 10:35:29 2011 +0000 Removed the support for Qt Assistance in the help, since we don'\''t use it in the end and that the help can be tested in a normal web browser, if needed. commit fd97039d5a8869d398a207d0400a8f541bb32d4b Author: Alan Garny Date: Fri Jan 14 00:52:06 2011 +0000 Rather than only being able to increase/decrease the size of the text in the help window, we can now increase/decrease the size of everything (i.e. proper zooming in/out). commit 562c6fca114be311dd69a077c6dc19d0ea5eb353 Author: Alan Garny Date: Thu Jan 13 23:48:22 2011 +0000 Prevent the text selection of any web page. commit 0e66b340070c0db90f3c19a910d563cf482a0086 Author: Alan Garny Date: Thu Jan 13 23:41:34 2011 +0000 Argh! commit fdc1e3dbb92ad57269dd8f86e21219abc2fea304 Author: Alan Garny Date: Thu Jan 13 23:40:52 2011 +0000 Renamed the known_issues.html file to knownIssues.html. commit 632f04ea669656047b347014e7e273a99f5620e3 Author: Alan Garny Date: Thu Jan 13 19:48:52 2011 +0000 Made the backward and forward buttons enabled/disabled whenever required. Consistency of code. commit 9237770a18e8ad3c856392668bb06c8d6f9c2b3e Author: Alan Garny Date: Thu Jan 13 19:14:35 2011 +0000 Added a couple of new icons (backward and forward) that are used in the help window. Replaced the homepage icon. Updated the help window with the aforementioned buttons. Need to enable/disable them depending on the history of the help browser. commit f6b8bf23ca1010cd9e367fd7c44dde350d36703c Author: Alan Garny Date: Thu Jan 13 18:37:31 2011 +0000 Working on the GUI of the help window. commit 7f7086ef6a63b5171dd63910efa8e3fc56cbae37 Author: Alan Garny Date: Thu Jan 13 16:56:37 2011 +0000 A column which should have been part of what needs translating (since in some languages, a space is expected before a column). commit bd90a738fe56777ffa52288b37ef09b7de1849c2 Author: Alan Garny Date: Thu Jan 13 16:45:36 2011 +0000 Updated the known issues help page. commit 7942c6b290020d2475babecefa897480c48b3d46 Author: Alan Garny Date: Thu Jan 13 16:39:55 2011 +0000 Renamed license to licensing wherever appropriate, since we may end up distributing OpenCOR under more than just one license. commit b5bdfaadc13cf0a37e596560bb673999f663e90d Author: Alan Garny Date: Thu Jan 13 16:32:08 2011 +0000 Can now open external pages within the help window. commit 69bd98ecc62b22be8b5c2eb55ab3d9da11d7ea88 Author: Alan Garny Date: Thu Jan 13 15:57:58 2011 +0000 Added a "known issues" help page. commit 7243abb1fe730a84f5be94d596236b928a2d189e Author: Alan Garny Date: Thu Jan 13 14:57:17 2011 +0000 Fixed a Qt (?) problem with the web history in the help widget. commit 186e6ed57750ecb760758421371de568195567a0 Author: Alan Garny Date: Thu Jan 13 13:58:24 2011 +0000 Removed the call to setUnifiedTitleAndToolBarOnMac(true) on Mac OS X, since that resulted in the dimensions of OpenCOR not being properly remembered (!!). Improved the help window by adding offering a way to go back to the homepage. Also implemented a resetAll function. commit f45200ce8ff001c71c1be3ae27bc2b1cea357a81 Author: Alan Garny Date: Thu Jan 13 12:56:59 2011 +0000 Support further means of navigation within the help widget. commit e7feca925f06d9c4032acbbd79dcc059b1931a58 Author: Alan Garny Date: Thu Jan 13 12:19:13 2011 +0000 Modified the source code to use my coding convention when it comes to the naming of variables. Basically, any parameter passed to a function must have the form pMyVariable, while any class member property (!?) must have the form mMyVariable, any global variable (!! None so far though!) gMyVariable, and and local variable myVariable. Oops, missed a couple of files! (!?) commit 27a30312501536cf4435bca7983bf9afeae150f4 Author: Alan Garny Date: Thu Jan 13 12:18:02 2011 +0000 Modified the source code to use my coding convention when it comes to the naming of variables. Basically, any parameter passed to a function must have the form pMyVariable, while any class member property (!?) must have the form mMyVariable, any global variable (!! None so far though!) gMyVariable, and and local variable myVariable. commit 3078a303ef8395d04b687bf5a99cede4ec1d3d4b Author: Alan Garny Date: Thu Jan 13 11:22:05 2011 +0000 Some cleaning up. Added an error page for the help (it ought never to be seen, but one never knows, so...). commit c6547c08c2c3a0e773dc746c42606a1b527c5437 Author: Alan Garny Date: Wed Jan 12 19:03:57 2011 +0000 Cleaned up the help viewer. Will most likely put back some features (e.g. determine whether the backward/forward action is enabled). Also need to allow for external URLs to be loaded within the help viewer (the original code would load such URLs in the user'\''s default web browser). commit 77bb71acffa6c385da5097b3e0383ab09a810ba4 Author: Alan Garny Date: Wed Jan 12 15:50:28 2011 +0000 Some cleaning up. commit 3872eded6a333e43f32a1b4078ccf01f574af957 Author: Alan Garny Date: Wed Jan 12 14:45:27 2011 +0000 Some cleaning up. commit 5c7ac7b58d6362d5b303e1ccdaafad2529eac4ab Author: Alan Garny Date: Wed Jan 12 14:24:37 2011 +0000 Some more cleaning up. commit 656f1762d544462cf2a5c86c58cd64018af98372 Author: Alan Garny Date: Wed Jan 12 14:05:18 2011 +0000 Some cleaning up. commit f9035af28005fb64485cb1e68d2ecd3b53a5283a Author: Alan Garny Date: Wed Jan 12 12:36:06 2011 +0000 Improved the help system. commit c78a08e3aff697c16ed361d86aaa93ba4a7762f8 Author: Alan Garny Date: Tue Jan 11 15:17:02 2011 +0000 Added the correspind viewHelp shell script for Linux / Mac OS X. commit 250468f45f2f05e577fb8adb63d5a840fafea4cd Author: Alan Garny Date: Tue Jan 11 15:15:39 2011 +0000 Added batch file to view the help using Qt Assistant (useful for testing the help file). commit daf95a641027e71bd9a4ee4b008740af15f37f47 Author: Alan Garny Date: Mon Jan 10 19:58:07 2011 +0000 Make the application look more like a Mac OS X application on Mac OX S. commit 4e27c1d34b741b4978be49f8666858a9b54c3eb2 Author: Alan Garny Date: Mon Jan 10 19:10:17 2011 +0000 Improved the reset all feature. commit 5dfdfba861ebdaec678f80ce2b74b4730e5edf27 Author: Alan Garny Date: Mon Jan 10 18:58:09 2011 +0000 Added a help toolbar. Made the code a bit more Qt-like by making use of signals/slots wherever possible. Some cleaning up. commit f9b0738f5208940c05debf999f2f509616ec831e Author: Alan Garny Date: Sat Jan 8 20:53:14 2011 +0000 Removed the Debian packaging for Linux. Indeed, there doesn'\''t seem to be a(n easy) way to get a working Debian package out of our current packaging script. Thus, if Debian packaging was allowed, we would for example try to install the qt.conf file under /usr/bin and the readme file under /usr, which is clearly not desired. I guess we could always create a specific CPack script for Debian packaging, but probably not worth it. Also, this would '\''break'\'' the nice generic solution that we have a the moment (i.e. everything within CMakeLists.txt), so... commit 8eb1b122a6498232e30742f93e78b2de44f69229 Author: Alan Garny Date: Sat Jan 8 20:12:41 2011 +0000 Updated the deployment script for Linux. commit 1107bdc9af8109a77ee21c190964c73647ad73f7 Author: Alan Garny Date: Sat Jan 8 18:56:02 2011 +0000 Removed some Linux-specific code which isn'\''t required in the end (and thank god for that, since it was a rather ugly hack!). commit cdccb90e42723f0532d292d3660e1717b32bd3a9 Author: Alan Garny Date: Sat Jan 8 17:59:34 2011 +0000 Fixed a small problem which prevented the settings of the help window, when docked, from being properly saved. commit 6af7737984a4574d0684533f0916a905954caf49 Author: Alan Garny Date: Sat Jan 8 15:47:40 2011 +0000 Some cleaning up of code. commit 5a3e008f4dfecc898e1f50a9895893b1e4baa092 Author: Alan Garny Date: Sat Jan 8 03:49:20 2011 +0000 Removed the macdeployqt call in the build shell script, since it really ought to be done as part of the make process. So, this is where it now is, together with adding libsqlite.dylib to the bundle, thus ensuring that the help can be seen properly. Note: when building and running OpenCOR from within Qt Creator, we get 3 messages like: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QObject::moveToThread: Current thread (0x102b01880) is not the object'\''s thread (0x102a29b60). Cannot move to target thread (0x102b01880) On Mac OS X, you might be loading two sets of Qt binaries into the same process. Check that all plugins are compiled against the right Qt binaries. Export DYLD_PRINT_LIBRARIES=1 and check that only one set of binaries are being loaded. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ I have checked and couldn'\''t see any library that is loaded twice. Not sure about the version of the Qt libraries though, but then again they are automatically added by macdeployqt and libqsqlite.dylib is also unique and from Qt, so...?! commit 3f4e4a5eb76656916bc497662a6548fc36f29f85 Author: Alan Garny Date: Sat Jan 8 00:50:53 2011 +0000 Added the QSqlLite DLL which is also required on Windows to get the help to work fine. commit 7a9f2f765bf7194c9850765a150f3617639aade8 Author: Alan Garny Date: Fri Jan 7 18:36:17 2011 +0000 Working on the Windows deployment. For some reason QtHelpd4.dll (and, as a result, a few other Qt DLLs) is required while a release version of other Qt DLLs is required (e.g. QtCore4.dll, QtGui4.dll). Why?! Otherwise, the SQL drivers are not currently deployed, but this clearly needs to be done (from past experience). commit 746c89e15e7f9a08e99749f46aaaaca16d62af11 Merge: 6c7c39057 faeaf637f Author: Alan Garny Date: Fri Jan 7 16:48:05 2011 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 6c7c39057bcf5085f22b994711669ec422806295 Author: Alan Garny Date: Fri Jan 7 16:45:17 2011 +0000 Hide the help window straightaway before setting it up, thus avoiding that it shows up for a microsecond (so to speak!). commit faeaf637ffbc5302c83d960be60343cf5f981ac6 Author: Alan Garny Date: Fri Jan 7 16:07:39 2011 +0000 Minor rewording. commit c54c2d2d81e7a0f76cf3f3a5e3ddd427d59af0df Author: Alan Garny Date: Fri Jan 7 11:59:52 2011 +0000 Fixed a small issue, on Linux, which showed a blank window in place of the help window when this one was supposed to be hidden upon starting OpenCOR. commit 9b9c0a0091ae68e801bce517b65f6d603f04cf18 Author: Alan Garny Date: Fri Jan 7 11:39:40 2011 +0000 Updated the reset all method to match what is also done in loadSettings. commit 373ab1ccbc1a9c5411c3f137369a4e7c054646f1 Author: Alan Garny Date: Fri Jan 7 11:23:34 2011 +0000 Added a means by which the user can reset all its user settings. commit f84cae2a5bcae16ee640d518e40be1367db0e2b6 Author: Alan Garny Date: Fri Jan 7 10:42:42 2011 +0000 Some trivial refactoring. commit c1ecef07f821114487e349986235489826539cc6 Author: Alan Garny Date: Fri Jan 7 10:34:42 2011 +0000 Minor reformatting. commit 51f94699ff98ec519def1c2f7d09b6d0b08810ad Author: Alan Garny Date: Fri Jan 7 10:20:25 2011 +0000 Generate the help files from within CMake, as opposed to from within the help batch/shell file/script. This allows for OpenCOR to be buildable from both the command line and from within Qt Creator. commit c57a703a53a563c03d24d9effb590c8cde34f7a6 Author: Alan Garny Date: Fri Jan 7 00:26:23 2011 +0000 Minor rewording of some text. commit cee3c665117e78de4f8031b99cd1c61977f6e908 Author: Alan Garny Date: Thu Jan 6 21:23:03 2011 +0000 Removed the About Qt menu item (don'\''t like it in the end!). commit 8c54566aaebc019f7749425c0ef9fcd4d4514450 Author: Alan Garny Date: Thu Jan 6 20:32:40 2011 +0000 Argh, I take it back. It seems (will find out once I have committed from Windows and pulled things on Mac OS X to test) that the help files need to be built on each platform. As a consequence, we don'\''t version control the generated .qch and .qhc files, and instead generate them in the build folder. This also means we can get rid, once again, of the help batch/shell file/script files! commit 76b911bf650b1fc422bc2ce9716540ced1839114 Author: Alan Garny Date: Thu Jan 6 20:17:58 2011 +0000 Changed the x permission of the help script. commit d7457a3dc687907fa4704ed0baffba1dd5ab334b Author: Alan Garny Date: Thu Jan 6 20:13:17 2011 +0000 Various cleaning ups of the code. Otherwise, decided not to rely on Qt Assistant (couldn'\''t find any '\''proper'\'' documentation on how to deploy it effectively on all three platforms; note: the current solution doesn'\''t deploy for now, but I know how to do that). Instead, have our own help viewer. So, implemented a skeleton of what will be our future help viewer. In the process, recreated the help batch/shell file/script, since there shouldn'\''t be a need to rebuild the help everytime we need to build a Qt application (from past experience). commit 50589075bd432041a141a2035c02be854aedbf27 Author: Alan Garny Date: Thu Jan 6 12:56:36 2011 +0000 Set the application icon on all three platforms. Added an about Qt menu item. commit 5cf46514f3b45f793e00440e88d6544684ad59b8 Author: Alan Garny Date: Wed Jan 5 12:47:47 2011 +0000 The choice of the right license for OpenCOR needs further thinking, so remove any direct reference to a specific license. Merged the help and buildall batch/shell files/scripts (the help file needs building every time!). Fixed a small issue in the Assistant class. commit e8b21e6f0e0d80b80e0b3eb80fb82ffaa5005bfa Author: Alan Garny Date: Tue Jan 4 17:32:32 2011 +0000 Whatever I did in a previous commit required rebuilding the help file, so... commit fb056de35d6472cb350582f3e12fce3d2ce6ea4d Author: Alan Garny Date: Tue Jan 4 17:23:31 2011 +0000 Cleaned up the CMakeLists.txt files. commit 2f5cf983ce31cb4229a7c4af35e2b1e3a56992bf Author: Alan Garny Date: Tue Jan 4 16:19:08 2011 +0000 Cleaned up the CMakeLists.txt files. commit 16c09b1d13b59bb7bcf4acd1ba001701a40e042c Author: Alan Garny Date: Tue Jan 4 15:54:23 2011 +0000 Made Qt 4.6 the minimum requirement for building OpenCOR (check BUILD.txt for more information). Fixed a small problem with the name of the application (OpenCOR instead of OpenCell). commit ebbf8e5ade135720662a1cf7df729e869474be9c Author: Alan Garny Date: Sun Jan 2 21:25:55 2011 +0000 Changed the license from LGPLv2.1 to GPLv2 (or later), since OpenCOR is not a library but an application, and it seems to me that this would be a more suitable license for OpenCOR. commit eadea357b470ca8f203d651f6478c84303d682b0 Author: Alan Garny Date: Sun Jan 2 16:11:24 2011 +0000 Got the CMake/CPack side of things to work fine with QtSingleApplication library on Mac OS X. commit bf006c05fbd4e7799f7e4c0428926b0a3749c9e7 Author: Alan Garny Date: Sun Jan 2 15:25:45 2011 +0000 Renamed qtsingleapplication to QtSingleApplication. commit 592f728886104e12317f7395e551d0cee537c548 Author: Alan Garny Date: Sun Jan 2 14:54:17 2011 +0000 Decided to revert to a shared version of QtSingleApplication. Need to finish things on Mac OS X though. commit affe68c0fa0f778393bcd4e801707a08470e3b22 Author: Alan Garny Date: Sat Jan 1 17:55:33 2011 +0000 Connected OpenCOR to its help file (using Qt Assistant which needs to be packaged along OpenCOR). commit 19866124a72b9de5c04712de4391748e1b5478ad Author: Alan Garny Date: Sat Jan 1 16:37:32 2011 +0000 Extract the help files upon starting OpenCOR (and delete them upon leaving OpenCOR). commit 304de75d506943c0ade89c5e838c971da6dc304f Author: Alan Garny Date: Sat Jan 1 16:30:19 2011 +0000 Added the Assistant class (from a Qt example), so that we can nicely display the help (not done yet though). commit 4501a9236bcf81fefe1531b0711a57e6f0340674 Author: Alan Garny Date: Sat Jan 1 16:16:39 2011 +0000 Moved a few files around. commit fdc880d2785b7782077f3d9949fda85b71663be4 Author: Alan Garny Date: Sat Jan 1 13:33:08 2011 +0000 Changed the x right access on the help shell script. commit 9ffe068e48ca6aec36c6ceb0f79aae2f0a78d0b2 Author: Alan Garny Date: Sat Jan 1 13:30:49 2011 +0000 Added a basic help file (not connected to OpenCOR yet). commit abfb8d2c85401b2387d7e32cd1251b1be1d67edb Author: Alan Garny Date: Fri Dec 31 16:49:07 2010 +0000 Take advantage of VERSION.txt in CMake, i.e. within CMakeLists.txt. Reminder: this is a '\''trick'\'' to get access to the version information with OpenCOR itself, since VERSION.txt is used as a resource within OpenCOR. commit aa6231df56744d92bc2cec502f1f6aa0f6e06b0e Author: Alan Garny Date: Fri Dec 31 13:51:04 2010 +0000 Fixed a problem that got introduced as part of some refactoring. commit ecb73a3208971996519ef292a328e4e48d8b3a12 Author: Alan Garny Date: Fri Dec 31 13:41:35 2010 +0000 Cross-platform development. Argh, missed something for Mac OS X! commit f62f8ed681ad16fa4d147089b0844305be051139 Author: Alan Garny Date: Fri Dec 31 13:26:53 2010 +0000 Argh with #ifdef & Co. commit 29e936371e2f7179ab12903189fef26fd5368f50 Author: Alan Garny Date: Fri Dec 31 13:18:23 2010 +0000 Oops! Renamed execProg, but not everywhere! commit 99fe5dbea6cf4254fb14581f697f33a8434bee19 Author: Alan Garny Date: Fri Dec 31 13:16:29 2010 +0000 Updated the about box. Retrieved the '\''correct'\'' application name and version information. Also retrieve the operating system information. Some refactoring. commit 8dfb239e353ce24bbacb44fcd03f039e7b1f54b9 Author: Alan Garny Date: Thu Dec 30 21:54:05 2010 +0000 Added a Debian packaging (for Linux). commit 1628cb3796479ecb51c792fac19175e82f390ad0 Author: Alan Garny Date: Thu Dec 30 21:11:04 2010 +0000 Added a handler for the about box menu item. commit 2fb499878cb43a2b01d2710dffd8b3b15f29d0a5 Author: Alan Garny Date: Thu Dec 30 20:30:33 2010 +0000 Retrieve and keep track of the geometry of OpenCOR and locale used. Added/replaced some icons. commit ab7851103e810a625039e475dd1238bd477f32ac Author: Alan Garny Date: Thu Dec 30 17:49:56 2010 +0000 Some more work on the current menu and added some handlers. commit 40033999c12c3145e6fa02f426cc17c6247ad302 Author: Alan Garny Date: Thu Dec 30 17:26:19 2010 +0000 The iconVisibleInMenu property (for menu items) is set by default on Windows and Mac OS X, but not Linux, so... commit 6f0922405fd282a73be15b12814649c9fb9cad1c Author: Alan Garny Date: Thu Dec 30 17:21:06 2010 +0000 Added an icon to some menu items. commit 7eada045316084ea4cb91be773b8e997225f3b8f Author: Alan Garny Date: Thu Dec 30 17:01:23 2010 +0000 Started work on the GUI with a non-functional menu. commit ec3c9e7dd787af8b9c6ffdc605eebc3cff77f35f Author: Alan Garny Date: Thu Dec 30 16:30:18 2010 +0000 Argh, I had to test the existence of OpenCOR as a directory on Mac OS X, not as a file. commit 023f2eeb8ac51f76203106643f566182e41daec3 Author: Alan Garny Date: Thu Dec 30 16:26:17 2010 +0000 Updated the run shell script to add a warning message in case OpenCOR hasn'\''t been built. commit 18d4e4e01a0531cd58622cabff1f7285ce1ca344 Merge: e74b9a35a 28b58f024 Author: Alan Garny Date: Thu Dec 30 13:13:26 2010 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: 3rdparty/qtsingleapplication/CMakeLists.txt CMakeLists.txt commit e74b9a35ad5495c1ba86df850c83510068a4f9d5 Author: Alan Garny Date: Thu Dec 30 13:03:40 2010 +0000 Forgot to add QtNetwork to the packaging rules. commit 4e1c4f1270dcbfeb3a1ccb1adfec3d46c2396e6b Author: Alan Garny Date: Wed Dec 29 23:41:33 2010 +0000 Now build QtSingleApplication statically. commit 28b58f0241cbfa0f56b1acd94ec58d3fbe53cbce Author: Alan Garny Date: Wed Dec 29 23:41:33 2010 +0000 Some cleaning up. commit 2d375df938be0e042d88f35c1396d7aa8c01ffdd Author: Alan Garny Date: Wed Dec 29 23:24:32 2010 +0000 Got QtSingleApplication to work on Windows, but as a shared library while it would be better to have it working as a static library. Also, the only way to currently get OpenCOR to work is by packaging it, since the DLL is not generated in the same folder as OpenCOR.exe. commit a095908fd2ac912c19ea737923a53ce204a22241 Author: Alan Garny Date: Wed Dec 29 18:02:21 2010 +0000 #include rather than #include commit 37a1f759a0b5873d7cd5ce1c2a753ce3b465beb3 Author: Alan Garny Date: Wed Dec 29 17:51:54 2010 +0000 Removed qtsinglecoreapplication.* from QtSingleApplication, since it'\''s not required. Also applied the patch which is required to get QtSingleApplication to work. Note that the original code works fine with the (QMake) examples provided with the QtSingleApplication package, but not with our code...?! No time (and point) in trying to figure out why this is the case. Other Qt/CMake projects have done something similar to us, so... commit df38ece470d683eced9a9f9b0218cdc7383a4704 Author: Alan Garny Date: Wed Dec 29 15:02:12 2010 +0000 For correctness, put back the (current) official version of QtSingleApplication (http://qt.gitorious.org/qt-solutions). The idea is to generate a patch/diff file (to be added to the QtSingleApplication folder), since the official version doesn'\''t work with Qt 4.7. commit e84f4f27d79e853be60a704a17a9dd10ad6e39f5 Author: Alan Garny Date: Wed Dec 29 13:24:04 2010 +0000 Updated the cleanall batch/shell script (forgot to account for the renaming of extra to 3rdparty). Added some code to handle the activation of an existing instance of OpenCOR. commit 9643c270fe0be9c4fdaae8a11aa283007479c385 Author: Alan Garny Date: Wed Dec 29 01:00:31 2010 +0000 Renamed the extra directory to 3rparty which makes more sense considering it'\''s for third-party libraries. commit 52d89fb2a7055e6b952ad20dfab044afda588574 Author: Alan Garny Date: Wed Dec 29 00:57:09 2010 +0000 Reverted a change to buildall.bat that mistakenly got committed. commit 6ca3f8b2a8b690a3919170bd8340a362b34ca44f Author: Alan Garny Date: Wed Dec 29 00:52:42 2010 +0000 Modified parts of QtSingleApplication to get it to compile fine. Added a readme file for the third-party libraries. Updated OpenCOR to support only one instance at a time. Note: the updated CMake project doesn'\''t currently allow for OpenCOR to build... commit 5160106d9d60ea95748e044b7f740b6391e5177b Author: Alan Garny Date: Tue Dec 28 23:05:36 2010 +0000 Fixed a copy/paste problem in the CMakeLists.txt file for QtSingleApplication. commit dd4703b327261816f5d5caf53be6e05d8663b00b Author: Alan Garny Date: Tue Dec 28 21:37:40 2010 +0000 Added the QtSingleApplication source code which comes from http://qt.gitorious.org/qt-solutions. commit a6a886fd29ccdfa11822780b322f01b83dd8d283 Author: Alan Garny Date: Tue Dec 28 18:06:16 2010 +0000 Some reformatting and cleaning up. Added an application icon for Windows and Linux (it was already done for Mac). Set the title of the main window to OpenCOR. commit b3d6828624490334a83eb12f01e54e579eb3fbc6 Author: Alan Garny Date: Tue Dec 28 16:49:21 2010 +0000 Some reformatting. commit e05c8028b0670b33b1f08a06b703ff47ae191473 Author: Alan Garny Date: Tue Dec 28 16:44:34 2010 +0000 Updated the build information. commit 86d2b721d24bf03a330bcc2e7e6ee29e89f6d551 Author: Alan Garny Date: Mon Dec 27 17:52:50 2010 +0000 Updated the Linux packaging, which was missing some libraries. commit 03172eb3652f7f6eb2fc67cb59832c4c513a1b99 Author: Alan Garny Date: Sun Dec 26 21:20:14 2010 +0000 Argh, when working on the packaging for the Mac OS X version, I removed the license information for the Windows version of the packaging. commit b97a402cb3c4be11b03daf85d169594cf303080d Author: Alan Garny Date: Sun Dec 26 21:06:50 2010 +0000 Oops, forgot something the OpenCOR shell script that needs distributing in the case of Linux and Mac OS X. commit c978ab7fa9e52792756dafdd689230261947d2cc Author: Alan Garny Date: Sun Dec 26 21:02:23 2010 +0000 Added ZIP packaging for Windows and Mac OS X. Replaced run.bat with run.vbs, i.e. a VBScript file which allows us to run OpenCOR without the Command Prompt window. commit f4da68d739518b9821724c0626c3a0c9b2b8f5c9 Author: Alan Garny Date: Sun Dec 26 17:13:08 2010 +0000 Some cleaning up. commit 3b59e784086ecb24c3f5044d8fbe5f79aef5d7a3 Author: Alan Garny Date: Sun Dec 26 17:12:04 2010 +0000 Updated the buildall shell script to ensure that OpenCOR can work on a Mac OS X machine that doesn'\''t have Qt. commit eabc708b48730afe64d7f52ca3befc1774135f17 Author: Alan Garny Date: Sun Dec 26 16:39:22 2010 +0000 Updated the Mac OS X specific packaging information (can now generate a meaningful installer). Updated the readme and (Mac OS X) welcome messages. commit cbf47f534ef84aebe8de89cc02601a0ef5137829 Author: Alan Garny Date: Sun Dec 26 15:26:00 2010 +0000 Updated the Mac OS X specific packaging script. commit 55c3e561518e8c96b0a4aa69bd4912b85380b287 Author: Alan Garny Date: Fri Dec 24 15:34:27 2010 +0000 Slight improvement to the packaging code. commit a1c8c6c4993ab341226f9e4725e483d03f1923fa Author: Alan Garny Date: Fri Dec 24 10:54:10 2010 +0000 Revert "Minor fix for the Linux packaging." This reverts commit 9f16a9e42683b04d6dc0ec0bf697f6055c7d5b4d. Indeed, the change that was introduced prevented the shell script from working when double clicking on it. commit 58dd2311f27efd62dae2fdf473c23aadf59532dd Author: Alan Garny Date: Fri Dec 24 10:49:10 2010 +0000 Minor fix for the Linux packaging. commit e79fe8d74fd20f72d256153007df2330c44eb2b4 Author: Alan Garny Date: Fri Dec 24 10:38:39 2010 +0000 Minor fix for the Windows packaging. commit 761fe94d64842736a7fb7f40653fe035b6007fc5 Author: Alan Garny Date: Thu Dec 23 21:03:49 2010 +0000 Updated the build information. commit 02ea4a5e0a2901589d55bbf539be36aca23e28f7 Author: Alan Garny Date: Thu Dec 23 20:08:15 2010 +0000 Improved the compiler options. commit 68a09e05a8e88b8dd948123aafb6e292ca387281 Author: Alan Garny Date: Thu Dec 23 10:12:17 2010 +0000 Set the the permissions of the Linux shell script right. commit ef0cfcf29dd839cf3331baa3073773d97821b871 Author: Alan Garny Date: Thu Dec 23 09:59:25 2010 +0000 Updated the x bit of the shell script distrib/OpenCOR. commit fc23c74272c5f196fc310af96b7dabce24b528bb Author: Alan Garny Date: Thu Dec 23 09:55:22 2010 +0000 Added the Linux shell script to run an installed version of OpenCOR. commit e04aaecf75f83294f4c0299fdeab40db4e082c96 Author: Alan Garny Date: Wed Dec 22 22:32:28 2010 +0000 Cleaned up CMakeLists.txt and added a few files for packaging. commit 86f82dc96efa3add6c6832f3d91f528a5e791ee8 Author: Alan Garny Date: Wed Dec 22 22:02:29 2010 +0000 Updated CMakeLists.txt as part of the work on packaging OpenCOR. commit 6205ef89d2301c0ad3870161fb64d72a27330112 Author: Alan Garny Date: Wed Dec 22 17:56:24 2010 +0000 Select the packager in a different way (my currently limited knowledge of cmake/cpack means that the way I tried to set CPACK_BINARY_NSIS & Co. doesn'\''t do the job, so...). Updated the build information. commit c4eb8316297701178ed9f68769fe000ffc2b5a2d Author: Alan Garny Date: Wed Dec 22 15:31:17 2010 +0000 Changed the Linux packaging from RPM to .stgz. Updated the build documentation. commit c7b4fec50314519ab91f12aca559677db6f4da2b Author: Alan Garny Date: Wed Dec 22 14:50:28 2010 +0000 Oops, forgot to remove something in CMakeLists.txt. commit f7ca22f007702301f02145b109d3030bd819ca07 Author: Alan Garny Date: Wed Dec 22 14:33:55 2010 +0000 Cleaned up the CMakeLists.txt file and (hopefully) selected the right packagers for the various platforms. commit c7972c2f9a148e05a6a1070540652024b0d9910b Author: Alan Garny Date: Wed Dec 22 14:17:56 2010 +0000 Cleaned up and updated some shell scripts. commit cb2245de6b18b9528228b7109e4b09176cea47c1 Author: Alan Garny Date: Wed Dec 22 13:58:56 2010 +0000 Done with packaging on Windows. commit f320d59b55b9bb67c4054ae67ba0a4b5f4e4a695 Author: Alan Garny Date: Wed Dec 22 10:50:28 2010 +0000 Started work on packaging rules. commit 2003755eebcbef216eff74e1e728e5bee56a345d Author: Alan Garny Date: Wed Dec 22 10:39:09 2010 +0000 Minor reformatting of CMakeLists.txt. commit 17607bbf59590b96b7b057ddf6c24391f80127e0 Merge: 1dda43f6b bd052e49f Author: Alan Garny Date: Wed Dec 22 10:33:32 2010 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 1dda43f6b7f494bc86b08abb9ad96c09f7e949fc Author: Alan Garny Date: Wed Dec 22 10:31:18 2010 +0000 Updated CMakeLists.txt so that the application icon gets set up (on Mac OS X to start with). commit 0b70d9d0edd2886d3b87bdd02e16932f3cb0157f Author: Alan Garny Date: Wed Dec 22 10:24:24 2010 +0000 Added an application icon. It is most likely going to be a temporary one, but it doesn'\''t matter. It'\''s just to get things set up at this stage. commit 2eca6504941fa0baae7d02d35c8e9c4017a06d70 Author: Alan Garny Date: Wed Dec 22 10:14:13 2010 +0000 Updadted the formatting and slightly improved CMakeLists.txt. commit bd052e49fee6ef8d40b715af137c1dcb7f5ac42d Author: Alan Garny Date: Tue Dec 21 23:10:53 2010 +0000 Added the shell equivalent of the packageall batch file. Cleaned up some files. commit 33e887df23de3cc728c802708ce147c3ff3ddb6a Author: Alan Garny Date: Tue Dec 21 22:58:24 2010 +0000 Tested things on Ubuntu 10.10 64-bit and therefore updated the documentation accordingly. Also various minor updates/improvements to text and batch files. Added a batch file that will be used for packaging OpenCOR. commit ab83758a82dc861b55f222e00c8fa6a38d359be4 Merge: c06b42253 cdc090d66 Author: Alan Garny Date: Tue Dec 21 16:12:48 2010 +0000 Merge branch '\''master'\'' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit c06b42253f2b958182e422094785155e71980dcc Author: Alan Garny Date: Tue Dec 21 16:11:56 2010 +0000 Updated the cleanall batch file. commit cdc090d66bd47bc46fdccff242c703d2b89b2bdb Author: Alan Garny Date: Tue Dec 21 16:11:05 2010 +0000 Updated the cleanall shell script. commit 17f5e7dd6c0ae52e7602710d9346789af98402af Author: Alan Garny Date: Tue Dec 21 14:19:42 2010 +0000 Updated the CMakeLists.txt, buildall and run files to get things to work on Mac OS X. commit 6e305af7c94986862522c88143474e880d696183 Author: Alan Garny Date: Mon Dec 20 22:28:54 2010 +0000 Updated the build file. commit 80946078386fb01765c453b5b8362589d7ec7aa9 Author: Alan Garny Date: Mon Dec 20 22:24:31 2010 +0000 Updated the cleanall shell script. commit 48fd5da1ba52b8aa3cecf137eef9e628e23f0efb Author: Alan Garny Date: Mon Dec 20 20:20:04 2010 +0000 Added CMakeLists.txt.user to the ignore list. commit bdf7333ef74cdab78597bcde203e2ae5fb23a547 Author: Alan Garny Date: Mon Dec 20 20:03:50 2010 +0000 Updated the build file. Updated the casing in CMakeLists.txt. commit 68d5cbd363eee194f2a0e3e762b9c9bf1be74e50 Author: Alan Garny Date: Mon Dec 20 10:58:23 2010 +0000 Added shell files for Linux to build, run and clean the OpenCOR environment. commit 4789544efb49bb4806307d76efeb0f68589b0558 Author: Alan Garny Date: Mon Dec 20 10:55:06 2010 +0000 Minor update to the cleanall batch file. commit 7c7dd97080da87b917e03e5f7c5851171c76c8e0 Author: Alan Garny Date: Mon Dec 20 10:38:19 2010 +0000 Renamed some batch files. commit c97ce8b98f865af7ae63c1a9e39ae17e20cc2452 Author: Alan Garny Date: Sun Dec 19 21:15:11 2010 +0000 Updated the build and clean batch files. commit ac3dfb2b494f938c452ad8fcd9bc86ef58159574 Author: Alan Garny Date: Sun Dec 19 21:00:37 2010 +0000 Added a few batch files to clean, build and run OpenCOR. Updated the build file. commit 833adb61dd67920ab90c1b03701d6f0f054fb298 Author: Alan Garny Date: Fri Dec 17 14:44:58 2010 +0000 Trivial changes to the CMake lists file. commit eb9000bdb2009188eb53b7c574b6dfb2c7a52d21 Author: Alan Garny Date: Thu Dec 16 17:39:32 2010 +0000 Updated the build file. commit 3fc700fd6229d8c33ad3d30df9fbd64c6f060892 Author: Alan Garny Date: Thu Dec 16 17:33:54 2010 +0000 Updated the readme file. Added a minimal Qt project. Added a (how to) build file. commit 074c779b715caeef3491481629a29fb10ac0b14f Author: Alan Garny Date: Thu Dec 16 17:08:22 2010 +0000 Added license information. commit d6f31f02f0782b559e3d61a3acc42452e97c676f Author: Alan Garny Date: Tue Dec 14 10:00:14 2010 +0000 Updated the readme file. commit 3fa09ba01d2dd0d4a28fe0e65e5a1fee5474d6ca Author: Alan Garny Date: Mon Dec 13 16:54:28 2010 +0000 Initial readme file.' + echo commit 73dc874228caa227f4a552084e75900f925d5ce4 Merge: 5a13167db 37ad4a231 Author: Alan Garny '' Date: Fri Oct 16 11:59:28 2020 +1300 Merge 37ad4a231f543cbb07cf454d49bf6e3632420ce6 into 5a13167dbd47e74e0941dbd65e6e387cff31c258 commit 37ad4a231f543cbb07cf454d49bf6e3632420ce6 Author: Alan Garny '' Date: Fri Oct 16 11:59:21 2020 +1300 Just for testing Jenkins '[006].' commit 17ded538fdb481ca80e26056d4c8f7505a1d30d0 Author: Alan Garny '' Date: Fri Oct 16 11:57:48 2020 +1300 Just for testing Jenkins '[005].' commit 237d70fe8d96fdc82d23459ae2e2e901ce7223d1 Author: Alan Garny '' Date: Fri Oct 16 11:48:34 2020 +1300 Just for testing Jenkins '[004].' commit 3993aa16c22d2768eba371a0cfbc8072cd8f56a8 Author: Alan Garny '' Date: Fri Oct 16 11:41:40 2020 +1300 Just for testing Jenkins '[003].' commit 52b8cc7a915916406b7e3fc9eaa8dd5e757f2d55 Author: Alan Garny '' Date: Fri Oct 16 11:39:35 2020 +1300 Just for testing Jenkins '[002].' commit c2002a62634275f254e28f3af85dedc87c965fe8 Author: Alan Garny '' Date: Fri Oct 16 11:36:11 2020 +1300 Just for testing Jenkins '[001].' commit 5a13167dbd47e74e0941dbd65e6e387cff31c258 Merge: d5b932fe7 b5bf6b18f Author: Alan Garny '' Date: Mon Oct 12 12:37:38 2020 +1300 SUNDIALS: upgrade to version 5.4.0 '(#2407).' commit b5bf6b18f0275e55126bfbfbb84ce8552ae51f06 Author: Alan Garny '' Date: Mon Oct 12 11:51:48 2020 +1300 Slight update to our downloads page '(#2407).' commit 32e93cc4562349ab8fdef026ed48da5b874c562d Author: Alan Garny '' Date: Mon Oct 12 11:49:41 2020 +1300 SUNDIALS: binaries for version 5.4 '(#2407).' commit 04cf919b20bfdb588fda9680f3c8e4c3001348c4 Author: Alan Garny '' Date: Mon Oct 12 11:40:08 2020 +1300 SUNDIALS: upgraded to version 5.4 '(#2407).' commit d5b932fe71c5c979f14dcd7c42c3b6ba69fe3a28 Merge: 9d89e203c 0344ecb5e Author: Alan Garny '' Date: Fri Sep 25 17:54:54 2020 +1200 Cleaning up. commit 0344ecb5e55d656fdb4293ccfd311e9b34645784 Author: Alan Garny '' Date: Fri Sep 25 16:57:49 2020 +1200 Some minor cleaning up. commit 91e17e07d9b1aacf40a89be5762f653b7846c958 Author: Alan Garny '' Date: Fri Sep 25 16:53:32 2020 +1200 Tool bar widget: enforce the use of a parent. commit fe7d19ee0009a64b42a879d989fab8feee39a231 Author: Alan Garny '' Date: Fri Sep 25 16:52:56 2020 +1200 Busy widget: changed the signature of its constructor. To be in line with what we do elsewhere. commit 9d89e203c8e423f62d72c66eb4f987af3f3635b0 Merge: d1457da1c 3959f2f25 Author: Alan Garny '' Date: Wed Sep 23 17:44:01 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target '(closes' '#2402).' Some third-party libraries 'haven'\''t' been updated since they were built under macOS 10.14. This means that whenever they get updated, they will be fine if they are being built using CMake, but not fine if they are built in a different way '(e.g.' with '`configue`/`make`).' So, we will need to update the building process for those third-party libraries so that we do something to what we have done for '`src/plugins/thirdParty/OpenSSL/CMakeLists.txt`' '(i.e.' use something like '`-mmacosx-version-min=${CMAKE_OSX_DEPLOYMENT_TARGET}`).' commit 3959f2f25adf4e756ecd51cfc2ffd3223eb75c0c Author: Alan Garny '' Date: Wed Sep 23 16:26:25 2020 +1200 macOS: updated some third-party binaries '(#2402).' commit 17ca4514c113f0df8fbf4fb26573776fd3f3c6bf Author: Alan Garny '' Date: Wed Sep 23 16:07:02 2020 +1200 macOS: updated some third-party binaries '(#2402).' commit 0d0617f7aab8fde667ad7e50e531165a0ba2905d Author: Alan Garny '' Date: Wed Sep 23 10:45:57 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target '(#2402).' commit d1457da1c5a2c61755b4fa45e978b8633de4bc6b Merge: d687dc464 abad678cf Author: Alan Garny '' Date: Wed Sep 23 10:33:23 2020 +1200 OpenSSL: upgrade to version 1.1.1h '(closes' '#2399).' commit abad678cf3bb41a0bdbc4d1382852622e35bf27b Author: Alan Garny '' Date: Wed Sep 23 09:36:42 2020 +1200 Slight update to our downloads page '(#2399).' commit 0fa55f091b7ceef41947fe588303eed085748540 Author: Alan Garny '' Date: Wed Sep 23 09:35:29 2020 +1200 OpenSSL: binaries for version 1.1.1h '(#2399).' commit bcc1c8a5ddd78c851b9c18fad7fdc1df3ce53f3d Author: Alan Garny '' Date: Wed Sep 23 09:14:18 2020 +1200 OpenSSL: upgraded to version 1.1.1h '(#2399).' commit d687dc464aa9e8efe9b5e3e491cf5e87b2dc8f71 Merge: 6e65d4d63 503456e76 Author: Alan Garny '' Date: Fri Aug 21 18:22:51 2020 +1200 Zinc widget: improved/fixed various things. commit 503456e7620abcff7297998136761358af9da5ff Author: Alan Garny '' Date: Fri Aug 21 16:49:23 2020 +1200 Zinc widget: fixed our 'reset()' method. We 'didn'\''t' need to call 'QOpenGLWidget::context()->create()' after 'all!' commit 5f801ae305cb5d6283428617f99642ef20b6d2b4 Author: Alan Garny '' Date: Fri Aug 21 15:11:18 2020 +1200 Some minor cleaning up. commit 95eb294f305bd5357b3559fe302b3c3214cff44b Author: Alan Garny '' Date: Fri Aug 21 14:31:20 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. 'Don'\''t' use a timer after all... since we now have a call to '`resizeEvent()`' rather than a couple to '`resize()`.' commit d58a68448b10ef0bc7bf288ae5b6c8207581eb40 Author: Alan Garny '' Date: Fri Aug 21 14:18:15 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. commit 5f73676e0440fb2448021750e5c4bcbf5343e4b1 Author: Alan Garny '' Date: Fri Aug 21 12:17:23 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. Now use a timer to check for a change in the device pixel ratio value. Also did some minor cleaning up. commit 97d2ce7402892e6ecaef0d91fce92e6ab03fe20a Author: Alan Garny '' Date: Fri Aug 21 11:28:53 2020 +1200 Some minor cleaning up. commit d10bc711b1b2f1c692a0f0dd697f431d2ad0d0dc Author: Alan Garny '' Date: Fri Aug 21 11:00:02 2020 +1200 Zinc widget: added a way to retrieve the FPS. commit 6e65d4d63eeb3582bfa0343daf261a8b6a8f5605 Author: Alan Garny '' Date: Wed Aug 19 15:18:56 2020 +1200 Some minor cleaning up. commit 86010b4f03dd3c81b56c04721a89c1433e38220a Merge: 590e8894c 58891bae3 Author: Alan Garny '' Date: Wed Aug 19 15:14:14 2020 +1200 Improved Zinc support. commit 58891bae3f0bfe155a89b2bc114967703c9e484c Author: Alan Garny '' Date: Wed Aug 19 14:37:02 2020 +1200 Some minor cleaning up. commit 69f94ce9bdd34dc21eed7b33b03c3a19f54d88b8 Author: Alan Garny '' Date: Wed Aug 19 14:32:41 2020 +1200 Zinc window: various improvements. - Can show/hide axes, points, lines, surfaces and 'isosurfaces;' and - Can load '(an)other' Zinc mesh 'file(s).' commit cdb8213f8dcd896a6100ecec6be732593af50019 Author: Alan Garny '' Date: Wed Aug 19 14:31:26 2020 +1200 Zinc widget: various improvements. - Support for a context 'menu;' - Default white 'background;' - Support for resetting the 'widget;' and - Improved support for high DPI. commit 590e8894c39282243535334d8f19850d5618c3dc Merge: 24f71e56b e52730b4e Author: Alan Garny '' Date: Tue Aug 18 17:37:59 2020 +1200 Some minor cleaning up. commit e52730b4e8c1504dddfa69d28891b31c8e1d982a Author: Alan Garny '' Date: Tue Aug 18 16:59:50 2020 +1200 Some minor cleaning up. commit 24f71e56b7e3645ee6c1e4189191072620f656db Merge: d2d08172e 7b64a430f Author: Alan Garny '' Date: Tue Aug 18 13:39:43 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit 7b64a430f2857dcefb41a765d904d84368f2e7cc Author: Alan Garny '' Date: Tue Aug 18 11:49:19 2020 +1200 Some minor cleaning up. commit 1fb2d0acfd0609e62e205774d0831f241a2874b5 Author: Alan Garny '' Date: Tue Aug 18 11:35:48 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit d2d08172eb37edf72475a76f90d9300832c351f5 Author: Alan Garny '' Date: Mon Aug 17 13:03:02 2020 +1200 Some minor cleaning up. commit 3bfcf86430fe27d9f457c89497a14b28d6b124fc Author: Alan Garny '' Date: Fri Aug 14 18:10:17 2020 +1200 Some minor cleaning up. commit 0f08c4bccf3656dc2d94cbbba38e6d238918f9ea Merge: deb5b82e9 71a6078b8 Author: Alan Garny '' Date: Fri Aug 14 10:35:46 2020 +1200 Zinc: 'don'\''t' allocate our Zinc context on the heap. See the square-bracket comment at '#2369' '(comment).' commit 71a6078b87656fbbd02287b69fefa8300d416c25 Author: Alan Garny '' Date: Fri Aug 14 09:58:25 2020 +1200 Zinc: 'don'\''t' allocate our Zinc context on the heap. See the square-bracket comment at https://github.com/opencor/opencor/issues/2369#issuecomment-673350896. commit deb5b82e906d5420f7be63d36fe7950c490375d3 Author: Alan Garny '' Date: Thu Aug 13 16:19:49 2020 +1200 Fixed a typo. commit 7c9fe2c27b8463311b2c11c87179035f1f6b989a Merge: 5993f9f14 dbebe3e58 Author: Alan Garny '' Date: Thu Aug 13 13:42:05 2020 +1200 Zinc window: some minor improvements. commit dbebe3e58cb8560b5167e6ac5520022f3ef2d2ba Author: Alan Garny '' Date: Thu Aug 13 12:21:14 2020 +1200 Zinc window: keep a temporary copy of our .exfile file. commit ee98ba2be7d0eb52aa6945855461c6de4206e695 Author: Alan Garny '' Date: Thu Aug 13 12:19:32 2020 +1200 Zinc window: skip 'createAndSetZincContext()' when closing OpenCOR. commit 5993f9f144fc44d6819502209c3317b90003c57f Merge: 3295700d3 d6d67a04b Author: Alan Garny '' Date: Wed Aug 12 20:41:30 2020 +1200 Made Clang-Tidy happy. commit d6d67a04bf8d8440616bdb962526788d38417d5d Author: Alan Garny '' Date: Wed Aug 12 18:18:03 2020 +1200 Make Clang-Tidy happy. commit 8263da36185a70d15654f0fe63137ea0bdf4ecf7 Author: Alan Garny '' Date: Wed Aug 12 15:58:38 2020 +1200 Some minor cleaning up. commit 3295700d3e92ec2944e1e887589adb36ce1edcf6 Merge: 999457f65 540120998 Author: Alan Garny '' Date: Wed Aug 12 00:41:56 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 '(closes' '#2371).' commit 540120998a31d2ee8f1157047531e8bb61943d88 Merge: 27a79c8af 999457f65 Author: Alan Garny '' Date: Wed Aug 12 00:01:41 2020 +1200 Merge branch ''\''master'\''' into issue2371. commit 999457f65ffba70fd167ec8910602edf7e6ec70b Merge: 7035b6117 da0992711 Author: Alan Garny '' Date: Wed Aug 12 00:00:10 2020 +1200 Varis improvements to our tests. commit da0992711cc9cfe7ebef5a72c0c109dfb4786d66 Author: Alan Garny '' Date: Tue Aug 11 22:54:06 2020 +1200 'Don'\''t' make external processes time out. commit f5347c818099cd8d57e92ca2b6487c42590a6a0a Author: Alan Garny '' Date: Tue Aug 11 17:01:31 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit a4864f0fe109cbbe9bc0651c60c027134f3a3bf3 Author: Alan Garny '' Date: Tue Aug 11 16:44:31 2020 +1200 Core tests: we need our MathML tests to use 'QTEST_GUILESS_MAIN()' on Windows. Otherwise, we get something like: '```' CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Start testing of MathmlTests CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Config: Using QtTest library 5.12.9, Qt 5.12.9 '(x86_64-little_endian-llp64' shared '(dynamic)' debug 'build;' by MSVC '2017)' PASS : 'MathmlTests::initTestCase()' QFATAL : 'MathmlTests::plusTests()' ASSERT: '"!m_baseURI.isRelative()"' in file 'environment\qgenericstaticcontext.cpp,' line 82 'FAIL!' : 'MathmlTests::plusTests()' Received a fatal error. Unknown 'file(0)' : failure location Totals: 1 passed, 1 failed, 0 skipped, 0 blacklisted, 91ms CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Finished testing of MathmlTests CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src '```' commit 3da6f4997e19efb4346bedf699e59874c4837b80 Author: Alan Garny '' Date: Tue Aug 11 14:12:04 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit 0480536a12b543e76fddd98aeafd8c51372ca31f Author: Alan Garny '' Date: Tue Aug 11 12:32:55 2020 +1200 Some minor cleaning up. commit f22483b3766df0e7d2827375d163d6bdc56a5e50 Author: Alan Garny '' Date: Tue Aug 11 11:55:40 2020 +1200 Some minor cleaning up. commit 31741f88fbc099e894c57d28bf8a3fa084add328 Author: Alan Garny '' Date: Tue Aug 11 00:06:29 2020 +1200 Revert '"Core:' slight improvement to our MathML 'tests."' This reverts commit e22409987af5bb83081999f9cd24fa9ccca8845f. commit e22409987af5bb83081999f9cd24fa9ccca8845f Author: Alan Garny '' Date: Tue Aug 11 00:04:44 2020 +1200 Core: slight improvement to our MathML tests. commit 13b5ab781674fb7f2f7af49d4b509a34c5422af7 Author: Alan Garny '' Date: Mon Aug 10 19:41:49 2020 +1200 Make CodeFactor happy. commit 993984d0fed308257602c4a26bd804626010e6ac Author: Alan Garny '' Date: Mon Aug 10 19:29:08 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit a92008c7f538baa9232ad1e7f2fead3b39d7fdb4 Author: Alan Garny '' Date: Mon Aug 10 19:07:39 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit 901996717ea0bb29c263d37f739d21d1e62557d5 Author: Alan Garny '' Date: Mon Aug 10 18:56:22 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit 552e5aaeaaa11aef454496742dd08e5ee8a4551d Author: Alan Garny '' Date: Mon Aug 10 18:39:06 2020 +1200 Some minor cleaning up. commit ef3a639afdd76b281ac5c68878ab0686efe20383 Author: Alan Garny '' Date: Mon Aug 10 18:38:53 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit 14ae94e5a936ddf7332da4c36b12eefae50ed0e8 Author: Alan Garny '' Date: Mon Aug 10 17:12:51 2020 +1200 Some minor cleaning up. commit 0e30b06c30b95488159ddbb1c70cd91745d1061e Author: Alan Garny '' Date: Mon Aug 10 17:06:13 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test '(as' opposed to one for each platform and each release/debug 'mode).' commit b476b7f1d5721646f6a6c29f6a8a387ac59e1bf6 Author: Alan Garny '' Date: Mon Aug 10 12:08:31 2020 +1200 Revert '"clcachewrapper:' 'don'\''t' escape double quotes since we only use paths with no 'spaces."' This reverts commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac. commit c22068da6e1873424b49c9424f019303eb858a8a Author: Alan Garny '' Date: Sat Aug 8 13:36:01 2020 +1200 Tests: wherever possible, use 'QTEST_APPLESS_MAIN()' rather than 'QTEST_GUILESS_MAIN().' commit 27a79c8af8184f81e87368b060d904342f3c6745 Author: Alan Garny '' Date: Thu Aug 6 21:30:41 2020 +1200 Slight update to our downloads pages '(#2371).' commit 457f5d8fc96ea32180e7f6169bfb8b6a5d15f13d Author: Alan Garny '' Date: Thu Aug 6 21:28:17 2020 +1200 LLVM-Clang: binaries for version 10.0.1 '(#2371).' commit b1a90ec3e13cc923352141e75b19209cc8dc60e2 Author: Alan Garny '' Date: Thu Aug 6 17:09:21 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 '(#2371).' commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac Author: Alan Garny '' Date: Sun Jul 5 11:54:41 2020 +1200 clcachewrapper: 'don'\''t' escape double quotes since we only use paths with no spaces. commit 7f94f451095e63ca5222499a9f8b481326e8bfc2 Merge: 6990b24c3 3b22f4731 Author: Alan Garny '' Date: Wed Jul 1 16:29:26 2020 +1200 Qwt: upgraded to version 6.1.5 '(closes' '#2365).' commit 3b22f4731b020543712cc7faef04faa4683f36d4 Merge: 3485a019b 6990b24c3 Author: Alan Garny '' Date: Wed Jul 1 15:43:08 2020 +1200 Merge branch ''\''master'\''' into issue2365. commit 6990b24c34168c3861396a5dff51d46326be483c Merge: f09e0e9ad 3b8fd35ab Author: Alan Garny '' Date: Wed Jul 1 15:42:19 2020 +1200 QScintilla: upgraded to version 2.11.5 '(closes' '#2364).' commit 3485a019b83f4a537034d72ac8f69717d0fb69ac Author: Alan Garny '' Date: Wed Jul 1 15:24:47 2020 +1200 Slight update to our downloads pages '(#2365).' commit c8305cd7f53811c5cf36f3a4933a88707a309dc9 Author: Alan Garny '' Date: Wed Jul 1 15:24:28 2020 +1200 Qwt: binaries for version 6.1.5 '(#2365).' commit d78200ed6847944dc5be6d49d36ad6ea288c7550 Author: Alan Garny '' Date: Wed Jul 1 15:09:09 2020 +1200 Qwt: upgraded to version 6.1.5 '(#2365).' commit 3b8fd35abffa38d776cb02291af9a2d32a578923 Merge: 9bf99ab82 f09e0e9ad Author: Alan Garny '' Date: Wed Jul 1 15:03:03 2020 +1200 Merge branch ''\''master'\''' into issue2364. commit f09e0e9ad24993a9738362badea13afe4228ad7b Merge: f8e03df6c c07e75092 Author: Alan Garny '' Date: Wed Jul 1 15:02:21 2020 +1200 Mesa: upgraded to version 20.1.2 '(closes' '#2363).' commit 9bf99ab82692e2caa664316e247616c7478363d4 Author: Alan Garny '' Date: Wed Jul 1 14:50:46 2020 +1200 Slight update to our downloads pages '(#2364).' commit 842fc76582ec9d06864bfcc6fed64d105ae6de28 Author: Alan Garny '' Date: Wed Jul 1 14:47:56 2020 +1200 QScintilla: binaries for version 2.11.5 '(#2364).' commit 027e382df4dba671c559d895fa0abe8012d3a921 Author: Alan Garny '' Date: Wed Jul 1 14:38:20 2020 +1200 QScintilla: upgraded to version 2.11.5 '(#2364).' commit c07e750925a77e2ea673d68bb4da2e482997e214 Author: Alan Garny '' Date: Wed Jul 1 14:25:43 2020 +1200 Mesa: binary for version 20.1.2 '(#2363).' commit b7a2fb8538e65c012dc799af4c5e70ffaf71c826 Author: Alan Garny '' Date: Wed Jul 1 14:10:05 2020 +1200 Revert '"Build' system: no need to set '`PYTHON_SUPPORT`' since we always have Python support '(#2358)."' This reverts commit 1e7a08f264dd449a1752306ed6837fcae18e763f. Indeed, we STILL need to know whether we are building OpenCOR with Python support, in case we need to build ONLY a third-party library '(e.g.' 'Mesa).' commit c6c4b6d91ae48bfb05aca20940b75b9923811b6c Author: Alan Garny '' Date: Wed Jul 1 13:42:46 2020 +1200 Mesa: upgrade to version 20.1.2 '(#2363).' commit f8e03df6ccff94f632b7d91841b68d51fecf53bf Author: Alan Garny '' Date: Fri Jun 19 15:42:53 2020 +1200 Properly retrieve 'OpenCOR'\''s' date. Oops, at some point we added an '"\n"' to the version file, which means that retrieving the last item returned an empty 'string...!' commit f2cbf85c3987e72075a4bef5c78022dfff903d1a Merge: 7fd1280a2 168b40985 Author: Alan Garny '' Date: Fri Jun 19 14:23:25 2020 +1200 New snapshot. commit 168b4098575781b40587e6f2c57a959a0538dd3d Author: Alan Garny '' Date: Fri Jun 19 12:56:48 2020 +1200 New snapshot. commit 7fd1280a2ad97548cc8bdf5c2b5a2f4a4cea2269 Merge: 75d571005 1e7a08f26 Author: Alan Garny '' Date: Fri Jun 19 12:55:26 2020 +1200 Build system: no need to set '`PYTHON_SUPPORT`' since we always have Python support '(closes' '#2358).' commit 1e7a08f264dd449a1752306ed6837fcae18e763f Author: Alan Garny '' Date: Fri Jun 19 12:25:39 2020 +1200 Build system: no need to set '`PYTHON_SUPPORT`' since we always have Python support '(#2358).' commit 75d57100514a07a77f91fd6b48225cd6ce72ba47 Merge: 7c3b22342 03244d904 Author: Alan Garny '' Date: Fri Jun 19 12:24:03 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 '(closes' '#2359).' commit 03244d904eafad2f07c1f3741aeca785aae2087c Author: Alan Garny '' Date: Fri Jun 19 11:24:11 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 '(#2359).' commit 7c3b2234235e4cdab84cd3641a534367f95eaf0c Author: Alan Garny '' Date: Thu Jun 18 17:38:07 2020 +1200 macOS: support macOS Mojave 10.14.4 and later '(#2354).' commit 83777d3a249a68f37dbf03ea90664f814e4c9d9a Merge: 2f10cedf0 03dd0d7bb Author: Alan Garny '' Date: Thu Jun 18 17:21:23 2020 +1200 Linux: deploy libffi.so.6 '(closes' '#2353).' commit 03dd0d7bb2c0259561a730af67fbc89ca6326167 Author: Alan Garny '' Date: Thu Jun 18 16:51:16 2020 +1200 Linux: deploy libffi.so.6 '(#2353).' commit 2f10cedf0f1f7d070736f0668edbf0d1abf18843 Merge: 5a4ec4ed0 e7a3fbf78 Author: Alan Garny '' Date: Thu Jun 18 13:26:50 2020 +1200 macOS: support macOS Mojave 10.14.4 and later '(closes' '#2354).' commit e7a3fbf7842866c9247d5df86dba78be11b3b611 Merge: 49fcbb1b2 5a4ec4ed0 Author: Alan Garny '' Date: Thu Jun 18 12:57:34 2020 +1200 Merge branch ''\''master'\''' into issue2354. commit 5a4ec4ed06a237ee8cb97128c247cf642ccb7d0a Merge: a35cd9ab7 35bdbd595 Author: Alan Garny '' Date: Thu Jun 18 12:55:58 2020 +1200 Cleaning up. commit 49fcbb1b2bb8e200b5d637e6b2352dea8fa61544 Author: Alan Garny '' Date: Thu Jun 18 12:28:28 2020 +1200 Some minor cleaning up. commit 8826a39803591f7180b58fb59e96d657f4818677 Author: Alan Garny '' Date: Thu Jun 18 12:28:21 2020 +1200 macOS: support macOS Mojave 10.14.4 and later '(#2354).' commit 35bdbd59536fb6fa25e8ced57acf0272bc081b39 Author: Alan Garny '' Date: Thu Jun 18 11:39:06 2020 +1200 Revert '"Unneeded' 'plugins."' This reverts commit d785793f64abd650721aa31d4ccb231809e19d8a. commit d785793f64abd650721aa31d4ccb231809e19d8a Author: Alan Garny '' Date: Wed Jun 17 17:59:24 2020 +1200 Unneeded plugins. At least, they 'don'\''t' seem to be needed anymore. commit 857cd1f85881ac5a35f26e1db8cd6684d304ab9a Author: Alan Garny '' Date: Wed Jun 17 16:46:22 2020 +1200 OpenSSL: new macOS binary. Not sure what happened, but our previous binary 'wasn'\''t' working on macOS 10.13, only macOS 10.14 and '10.15...!?' '(macOS' 10.13 claims that OpenSSL was built for macOS '10.15.)' commit d0702f63748da26c6c930795a49355c5bbf96c79 Author: Alan Garny '' Date: Wed Jun 17 16:43:21 2020 +1200 Qt WebKit: new Linux binary. This is a revert of commit b45dfd332 where we built Qt WebKit with a special RPATH value, which we 'don'\''t' need. commit 66d8722dede0893fdf5067842bc71f6587fffe55 Author: Alan Garny '' Date: Wed Jun 17 16:33:26 2020 +1200 Linux: libffi.so.6 is needed by Python '(well,' 'NumPy),' not Qt WebKit. Yet, there is no point in shipping it since 'it'\''s' not one of '"our"' files that needs libffi.so.6. Our solution may be to upgrade NumPy. Will have to see... commit b45dfd33287a6407ada7f047734925831318970b Author: Alan Garny '' Date: Wed Jun 17 15:59:43 2020 +1200 Qt WebKit: new Linux binary. On Ubuntu 20.04, we now need access to 'libffi.so.6!' commit 85d83a8034c6a8f805fe48abbac939cd2fbb9f64 Author: Alan Garny '' Date: Wed Jun 17 14:51:12 2020 +1200 Qt WebKit: new macOS binary. Not sure what happened, but our previous binary 'wasn'\''t' working on macOS 10.13, only macOS 10.14 and '10.15...!?' '(macOS' 10.13 claims that Qt WebKit was built for macOS '10.15.)' commit a35cd9ab7d3fa43e5ba9679f6dbdb9bdee2fb1e0 Merge: e3b172cd8 a4df8db11 Author: Alan Garny '' Date: Wed Jun 17 09:36:46 2020 +1200 New snapshot. commit a4df8db1184e5b974aa51a1a49cce097f5d55953 Author: Alan Garny '' Date: Wed Jun 17 08:57:36 2020 +1200 New snapshot. commit e3b172cd874f5e277d49a91befacf68dcc6f675f Merge: 950f55422 4ddecf941 Author: Alan Garny '' Date: Mon Jun 15 17:45:54 2020 +1200 Some minor cleaning up. commit 4ddecf9416d631620d13ff8ba95e088773c8d975 Author: Alan Garny '' Date: Mon Jun 15 17:08:23 2020 +1200 Some minor cleaning up. commit 950f5542239adf00a8b707a2e75810aff2877b90 Merge: 52c155bd0 71c0acbfd Author: Alan Garny '' Date: Mon Jun 15 14:12:57 2020 +1200 Cleaning up. commit 71c0acbfdde5cb32a9468c4a3bdb10f72d145118 Author: Alan Garny '' Date: Mon Jun 15 13:36:02 2020 +1200 Some minor cleaning up. commit 33c6cd5d98462988b535e24b2efc9f8cde2659bc Author: Alan Garny '' Date: Sun Jun 14 16:00:22 2020 +1200 Some minor cleaning up. commit 6f9bd7c9b862b7b59ad0e5f817815314339bfbf0 Author: Alan Garny '' Date: Sun Jun 14 15:50:26 2020 +1200 Some minor cleaning up. commit 57ed29a3fbc4822afce35b475cb562665152e52a Author: Alan Garny '' Date: Sun Jun 14 15:36:16 2020 +1200 Some minor cleaning up. commit a0e0b715c4e409ed921fd79e06f492b0bcb930ef Author: Alan Garny '' Date: Sun Jun 14 15:35:00 2020 +1200 Some minor cleaning up. commit af4affc677c29157d5144a9d2ab214a9ebfdde81 Author: Alan Garny '' Date: Sun Jun 14 15:33:25 2020 +1200 Some minor cleaning up. commit cd8d81fc76cc46dbc97df4c0dfd68c3c9fcc999a Author: Alan Garny '' Date: Sun Jun 14 15:22:04 2020 +1200 Some minor cleaning up. commit f4797eafe5017f1e6f97e60064fcdd01440505e5 Author: Alan Garny '' Date: Sun Jun 14 14:18:54 2020 +1200 Some minor cleaning up. commit c5c2c2c701e848109ac83e1911d5db437c7a6a3b Author: Alan Garny '' Date: Sun Jun 14 14:15:59 2020 +1200 Some minor cleaning up. commit ca22dd814730dfbdc1e294c70dab49f4de5bf9b3 Author: Alan Garny '' Date: Sun Jun 14 13:27:01 2020 +1200 Some minor cleaning up. commit d1c387820e2a93110fbecd87625fcc742eb6c925 Author: Alan Garny '' Date: Sun Jun 14 13:23:49 2020 +1200 Some minor cleaning up. commit afd99931fc1473bacf2439f5fb39e2784bc8f222 Author: Alan Garny '' Date: Sun Jun 14 13:17:32 2020 +1200 Some minor cleaning up. commit eda680fcd77a5dae58458f1d872475939540b093 Author: Alan Garny '' Date: Fri Jun 12 18:22:15 2020 +1200 Some minor cleaning up. commit 52c155bd02c3f3c18fd39e634b131dfd9c7f9273 Merge: 8bf7a1ef7 8db859df3 Author: Alan Garny '' Date: Fri Jun 5 16:36:35 2020 +1200 libgit2: upgraded to version 1.0.1 '(closes' '#2348).' commit 8db859df305051db3ba020b8ac4e63b80aefd155 Author: Alan Garny '' Date: Fri Jun 5 09:13:12 2020 +1200 Slight update to our downloads page '(#2348).' commit af3fe65ab5445a795bd1cdd87845a8c160b43d83 Author: Alan Garny '' Date: Fri Jun 5 08:57:21 2020 +1200 libgit2: binaries for version 1.0.1 '(#2348).' commit bea92b0cc734c78131e6fbc89cdf7c599a1d30db Author: Alan Garny '' Date: Fri Jun 5 08:49:22 2020 +1200 libgit2: upgraded to version 1.0.1 '(#2348).' commit 8bf7a1ef7b31331aacd356df8fa1e162b282de3e Merge: 1f1da792f 9cbbb7370 Author: Alan Garny '' Date: Sun May 31 13:14:15 2020 +1200 libgit2: upgrade to version 0.28.5 '(closes' '#2346).' commit 9cbbb7370fb99dce64c496ac71d1ab71c3d9972b Author: Alan Garny '' Date: Sun May 31 12:50:11 2020 +1200 PMR support: ported '(back)' our libgit2-related code to version 0.28.5 '(#2305).' commit 71ddf9e2cf8f61ea61732c93039922c37b6495f8 Author: Alan Garny '' Date: Sun May 31 12:44:25 2020 +1200 Slight update to our downloads page '(#2346).' commit 53cc0c12b8298989c618c90f0e246cd1d659fb07 Author: Alan Garny '' Date: Sun May 31 12:43:18 2020 +1200 libgit2: binaries for version 0.28.5 '(#2346).' commit b3a222572951ff5ba06c775f3d29acc6d67318dd Author: Alan Garny '' Date: Sun May 31 12:31:33 2020 +1200 libgit2: upgraded to version 0.28.5 '(#2346).' commit 1f1da792f27a3ed203cc5dd6b2f940204daeeba7 Merge: 357e5345c 6f71bfee8 Author: Alan Garny '' Date: Tue May 26 18:50:56 2020 +1200 SUNDIALS: upgraded to version 5.3.0 '(closes' '#2344).' commit 6f71bfee8a519ee344f026b4318dfc03cdcf6688 Author: Alan Garny '' Date: Tue May 26 18:06:34 2020 +1200 Slight update to our downloads page '(#2344).' commit a5d44d865def80031b51935163ef52a17484b393 Author: Alan Garny '' Date: Tue May 26 18:05:29 2020 +1200 SUNDIALS: binaries for version 5.3.0 '(#2344).' commit 18fd583dd4bc300b4d9b871732f0bb8bfe12de2e Author: Alan Garny '' Date: Tue May 26 17:58:18 2020 +1200 SUNDIALS: upgraded to version 5.3.0 '(#2344).' commit 357e5345c21c2a32da94bbf51cbc9061282cb5ce Merge: 5747f9d00 2a26b250d Author: Alan Garny '' Date: Fri May 15 17:29:12 2020 +1200 Mesa: upgraded to version 20.0.7 '(closes' '#2342).' commit 2a26b250d3ab1d10b56161565b3b5ba01f0c5f75 Author: Alan Garny '' Date: Fri May 15 16:41:46 2020 +1200 Slight update to our downloads page '(#2342).' commit 68caa9fc6e566d14661e8788a4b3a23f5f828ab0 Merge: 977ce4012 5747f9d00 Author: Alan Garny '' Date: Fri May 15 16:39:59 2020 +1200 Merge branch ''\''master'\''' into issue2342. commit 5747f9d006ced6283f7f9126a42e5205e71e753b Merge: c80d70e03 c76ee1185 Author: Alan Garny '' Date: Fri May 15 16:39:06 2020 +1200 libgit2: upgraded to version 1.0.0 '(closes' '#2340).' commit 977ce4012e26d5ce09024bff0172448d99ae3e08 Author: Alan Garny '' Date: Fri May 15 16:02:25 2020 +1200 Mesa: binary for version 20.0.7 '(#2342).' commit 3040e95d2914bdaf461c35992d161c7348c06c4a Author: Alan Garny '' Date: Fri May 15 15:54:15 2020 +1200 Mesa: upgraded to version 20.0.7 '(#2342).' commit c76ee1185756c92fe85d29e92bcbedd66e402b9e Author: Alan Garny '' Date: Fri May 15 15:42:15 2020 +1200 Slight update to our downloads page '(#2340).' commit 81022ef9dd9c34fcbec805bc993adbdb45769daf Author: Alan Garny '' Date: Fri May 15 15:42:02 2020 +1200 libgit2: binaries for version 1.0.0 '(#2340).' commit 51992b84d4225372d1ad3fb1696d29dd7dd47a8e Author: Alan Garny '' Date: Fri May 15 15:25:14 2020 +1200 libgit2: upgraded to version 1.0.0 '(#2340).' commit c80d70e0346672b28df54720bea2fe2d9a560ee8 Merge: b91bc8425 856777886 Author: Alan Garny '' Date: Fri May 15 15:04:41 2020 +1200 jQuery: upgraded to version 3.5.1 '(closes' '#2338).' commit 8567778864b8e5972fa0c797eed380f6cf2428b0 Author: Alan Garny '' Date: Fri May 15 14:38:35 2020 +1200 Slight update to our downloads page '(#2338).' commit d3c2544b8ab3f0a50fabbb8142db24f6db9b5bd6 Author: Alan Garny '' Date: Fri May 15 14:36:51 2020 +1200 jQuery: upgraded to version 3.5.1 '(#2338).' commit b91bc84254d9eb5bba5b0186cad0557b9be694ec Merge: 622139c56 3c55e6254 Author: Alan Garny '' Date: Tue May 12 14:17:27 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object '(closes' '#2336).' commit 3c55e625489387673b067cb6697cf4fcc7006546 Author: Alan Garny '' Date: Tue May 12 13:23:43 2020 +1200 Slight update to our downloads page '(#2336).' commit f30d20688d19e4b3de675bffc4a2b075273d57d8 Author: Alan Garny '' Date: Tue May 12 13:19:43 2020 +1200 Slight reordering of our CellML variable type '(#2336).' Just so that the order looks '"better".' commit 5559289a1f8ece9976c7ac5710c359cf3397db7a Author: Alan Garny '' Date: Tue May 12 13:13:45 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object '(#2336).' commit 622139c56990ceb7833d0db1a14af9bc2b2a5edf Merge: d2535c38b 66f01fbcf Author: Alan Garny '' Date: Mon May 4 14:05:29 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit 66f01fbcfc9aaf0bbf0a63650faa020e83092853 Author: Alan Garny '' Date: Mon May 4 13:18:26 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit d2535c38b2e13bfeb2472138a4620591c8a46214 Merge: e64c399c8 14a447c89 Author: Alan Garny '' Date: Sat Apr 25 19:06:31 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches '(#2332).' commit 14a447c893e83ed31b3ce6f2656c8878ffe979aa Author: Alan Garny '' Date: Sat Apr 25 18:00:33 2020 +1200 Slight update to our downloads page '(#2332).' commit 5536aa7a2188a71af74c253b877908804c65a51a Author: Alan Garny '' Date: Sat Apr 25 17:59:12 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches '(#2332).' commit e64c399c81f12a02da02bf6327119c3c3c223fcc Merge: 0aca40edc c864195f4 Author: Alan Garny '' Date: Wed Apr 22 15:23:59 2020 +1200 CellML Annotation view: 'can'\''t' look up a resource or an id 'anymore?!' '(closes' '#2190).' commit c864195f4130249f8b7ade893371a34857dac9f8 Merge: 9ddccda5e 0aca40edc Author: Alan Garny '' Date: Wed Apr 22 14:57:02 2020 +1200 Merge branch ''\''master'\''' into issue2190 commit 9ddccda5ec64fe9b389fb1464ef5a3b86110f3c6 Author: Alan Garny '' Date: Wed Apr 22 14:55:44 2020 +1200 Merge branch ''\''master'\''' into issue2190. commit a19d95172df7fbdbf2e03591d198810c4206905a Author: Alan Garny '' Date: Wed Apr 22 14:52:40 2020 +1200 Slight update to our downloads page '(#2190).' commit fc2f03a3cd8994eef4b556106facb99aa8fb988f Author: Alan Garny '' Date: Wed Apr 22 14:49:20 2020 +1200 Some minor cleaning up. commit 0aca40edc7c208a2c5415cc646c7449c6003c8fe Merge: 8323419f2 0987196ad Author: Alan Garny '' Date: Wed Apr 22 13:07:58 2020 +1200 OpenSSL: upgraded to version 1.1.1g '(closes' '#2326).' commit 0987196ad61638161cd53605378e8027eeedec0e Author: Alan Garny '' Date: Wed Apr 22 09:10:20 2020 +1200 Slight update to our downloads page '(#2326).' commit d7153c1c1a6ba7f37553cd0fa1bcb1aaf61a0bbe Author: Alan Garny '' Date: Wed Apr 22 09:10:06 2020 +1200 OpenSSL: binaries for version 1.1.1g '(#2326).' commit 6837bbf7a03fcf4e1d87c56724b9c13eedb1ec89 Author: Alan Garny '' Date: Wed Apr 22 08:39:45 2020 +1200 OpenSSL: upgraded to version 1.1.1g '(#2326).' commit 8323419f27260424c26c2045833c00099c3cd746 Merge: 5136211dc dc57483d3 Author: Alan Garny '' Date: Tue Apr 21 17:44:02 2020 +1200 SUNDIALS: upgraded to version 5.2.0 '(closes' '#2322).' commit dc57483d3059f1d2c2f9a43c6ad180d98d21aa84 Author: Alan Garny '' Date: Tue Apr 21 17:13:59 2020 +1200 Slight update to our downloads page '(#2322).' commit dfa0b24b3a73e6e1a7a21a5c39f4b11b734aed6b Author: Alan Garny '' Date: Tue Apr 21 17:13:48 2020 +1200 SUNDIALS: binaries for version 5.2.0 '(#2322).' commit f0247410e4a36ac64acda1b446c9e53bc2cd908d Author: Alan Garny '' Date: Tue Apr 21 17:01:24 2020 +1200 SUNDIALS: upgraded to version 5.2.0 '(#2322).' commit 6acaaf3e0f181ea55e877d6622e18ddc8d95f0b6 Merge: bcf2ef76b 5136211dc Author: Alan Garny '' Date: Thu Apr 9 18:23:30 2020 +1200 Merge branch ''\''master'\''' into issue2190. commit 5136211dc69710e55256a2f725ec3b1cf17734ab Author: Alan Garny '' Date: Thu Apr 9 18:22:50 2020 +1200 Some minor cleaning up. commit bcf2ef76b8b70583310bba52b4dfe5362bc6777c Merge: b8d9e28ee e4b938a97 Author: Alan Garny '' Date: Thu Apr 9 17:37:24 2020 +1200 Merge branch ''\''master'\''' into issue2190. commit e4b938a9721899c52dbfe16e424e467f7a4afdfc Author: Alan Garny '' Date: Thu Apr 9 17:35:36 2020 +1200 Added the 2019-12-20 snapshot. For some reasons, it got removed... by mistake, I 'imagine!' commit b8d9e28ee795307f611547fab25e97568729768a Merge: 60e37baa1 cdacb2dc4 Author: Alan Garny '' Date: Wed Apr 8 10:28:24 2020 +1200 Merge branch ''\''master'\''' into issue2190. commit cdacb2dc448e07c7d1375281ff6cef07532ab8ae Author: Alan Garny '' Date: Wed Apr 8 10:27:37 2020 +1200 Make it possible to run a debug version of OpenCOR from within Qt Creator. commit 60e37baa10461118890bea6aaf596061f02fe125 Author: Alan Garny '' Date: Fri Apr 3 12:02:56 2020 +1300 Some minor cleaning up. commit 37135d7b13a00113843e2e4bb1c7cb6c0620c5bb Author: Alan Garny '' Date: Fri Apr 3 11:49:15 2020 +1300 CellML Annotation view: updated our use of identifiers.org '(#2190).' commit 47354444a9b8c7da8f4496b471f2909ee8c82dd2 Merge: 046d54b05 9c2c8985a Author: Alan Garny '' Date: Thu Apr 2 18:31:33 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 '(closes' '#2314).' commit 9c2c8985ad90e4d6aed6717b716b3d72e764d894 Author: Alan Garny '' Date: Thu Apr 2 17:30:02 2020 +1300 Use the C++14 standard for both our main executable and all our plugins '(#2314).' We need support for the C++14 standard so that we can use LLVM+Clang 10.0.0. So, technically speaking, our main executable 'doesn'\''t' need that support, only our plugins that directyle or indirectly rely on LLVM+Clang. commit 248ff7ac47ad41240492812cdcccae92fee072e1 Author: Alan Garny '' Date: Thu Apr 2 10:54:29 2020 +1300 Compiler: account for 'clang::CompilerInvocation::CreateFromArgs()'\''s' new signature '(#2314).' commit 95d321008e5396a5abec16723d1a3191d384567e Author: Alan Garny '' Date: Wed Apr 1 23:09:27 2020 +1300 Slight update to our downloads page '(#2314).' commit c0da74d04dbba41934a500c04b0e803faa78b39c Author: Alan Garny '' Date: Wed Apr 1 23:04:34 2020 +1300 LLVM+Clang: binaries for version 10.0.0 '(#2314).' commit 097e34c62634d883b88b290eabb84e528c02e6c0 Author: Alan Garny '' Date: Wed Apr 1 18:49:04 2020 +1300 LLVM+Clang: binaries for version 10.0.0 '(#2314).' commit b66a1be21f53b567a81bbe4ef356d4429ac74084 Author: Alan Garny '' Date: Wed Apr 1 13:40:51 2020 +1300 LLVM+Clang: handle new options / remove old options '(#2314).' Partly reverted commit 6f30b98d3 '(#2314).' Indeed, those options were listed when doing a '`ccmake`,' but they are not actually used 'afterwards...!?' As confirmed by '`cmake' '-LA`.' commit 6f30b98d35de582f53ec2749ffd288d7eb45bb2e Author: Alan Garny '' Date: Wed Apr 1 13:06:00 2020 +1300 LLVM+Clang: handle new options / remove old options '(#2314).' commit 62afa82e6873e16524613f0d011c5f77b5510f52 Merge: 47ed2cdbe 046d54b05 Author: Alan Garny '' Date: Wed Apr 1 11:44:25 2020 +1300 Merge branch ''\''master'\''' into issue2314. commit 046d54b0558d90cd73569bcff8917007111b7305 Merge: 2a07b83ae 3e682debc Author: Alan Garny '' Date: Wed Apr 1 11:43:29 2020 +1300 OpenSSL: upgraded to version 1.1.1f '(closes' '#2318).' commit 3e682debc192aeae2b863051cb6bfee095cbbf1d Author: Alan Garny '' Date: Wed Apr 1 10:12:03 2020 +1300 Slight update to our downloads page '(#2318).' commit 5de9a85afd64cd70cd48c48a2eab9a5457a4938e Author: Alan Garny '' Date: Wed Apr 1 10:11:43 2020 +1300 OpenSSL: binaries for version 1.1.1f '(#2318).' commit eab7c142b07f9b37966d63caadf9d041dc3ebf64 Author: Alan Garny '' Date: Wed Apr 1 09:47:36 2020 +1300 OpenSSL: upgraded to version 1.1.1f '(#2318).' commit 47ed2cdbe9ee61ed45d475db15d295d37ed6bf7d Author: Alan Garny '' Date: Tue Mar 31 10:46:58 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 '(#2314).' commit 2a07b83ae6b66247a6f554054e71abd8b7a4c181 Merge: e08a46833 16eeba596 Author: Alan Garny '' Date: Mon Mar 30 22:19:19 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 '(closes' '#2309).' commit 16eeba59684f4ecf06db55f226b1b08d6468f688 Author: Alan Garny '' Date: Mon Mar 30 21:50:14 2020 +1300 QtWebKit: binaries for version 5.212.0 Alpha 4 '(#2309).' commit 43abcf852f05e0852f91e28377936a344fa789c2 Author: Alan Garny '' Date: Sat Mar 28 19:25:22 2020 +1300 QtWebKit: slight update to our README.rst file. commit 6d8a4328d8ed3485ce4006a3bd79cc220853fecd Author: Alan Garny '' Date: Sat Mar 28 19:22:38 2020 +1300 QtWebKit: Python 3.x is now needed to build the library '(#2309).' commit 890702a4f98bc6ef9f742ef793fab48a580182d5 Author: Alan Garny '' Date: Sat Mar 28 19:21:57 2020 +1300 QtWebKit: slight updates to our prerequisites to building the library. commit 2c254f0a2c66a63a755d35b2fdb4fcddabd79cdf Author: Alan Garny '' Date: Sat Mar 28 19:18:27 2020 +1300 QtWebKit: Python 3 is now needed to build the library '(#2309).' commit b82f9bd4302c668a4c5be4146bc40c0296d07b19 Author: Alan Garny '' Date: Fri Mar 27 16:20:03 2020 +1300 QtWebKit: use the PORT option to build the library '(#2309).' commit 350f42f6928768b51056f393f85f4c1f81205b0b Author: Alan Garny '' Date: Fri Mar 27 09:13:55 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 '(#2309).' commit e08a468335e831b7dc89280aa9e191d83d891f7d Merge: 5100976da f33e14152 Author: Alan Garny '' Date: Thu Mar 26 19:07:06 2020 +1300 QScintilla: upgraded to version 2.11.4 '(closes' '#2307).' commit f33e1415247192ce76842f484fae54fa9fd4ed0b Author: Alan Garny '' Date: Thu Mar 26 18:15:08 2020 +1300 Slight update to our downloads page '(#2307).' commit 207da208484266835a2d85e736216feb80147cf4 Author: Alan Garny '' Date: Thu Mar 26 18:14:52 2020 +1300 QScintilla: binaries for version 2.11.4 '(#2307).' commit 651faf190b4217092fe3bca4bf1cd6ddd30e4ecb Author: Alan Garny '' Date: Thu Mar 26 18:05:43 2020 +1300 QScintilla: upgraded to version 2.11.4 '(#2307).' commit 5100976daed63908e9f1004e78c2c8cc5516001c Merge: ddd99e05a fa667974b Author: Alan Garny '' Date: Thu Mar 26 16:59:35 2020 +1300 OpenSSL: upgraded to version 1.1.1e '(closes' '#2310).' commit fa667974bcb5d5ee367109060cabc86dda30cd31 Author: Alan Garny '' Date: Thu Mar 26 16:07:38 2020 +1300 Slight update to our downloads page '(#2310).' commit 044eae571edcf9350684ccf7d472d3eddc1e72a8 Author: Alan Garny '' Date: Thu Mar 26 16:07:18 2020 +1300 OpenSSL: binaries for version 1.1.1e '(#2310).' commit ecb636c38d67a993946534776adbccaa0a8e485c Merge: 9abf84843 ddd99e05a Author: Alan Garny '' Date: Thu Mar 26 15:42:22 2020 +1300 Merge branch ''\''master'\''' into issue2310. commit ddd99e05a5d7ae9673f0183c9cb5382cab0bde24 Merge: f88280ef7 db48daaf8 Author: Alan Garny '' Date: Thu Mar 26 15:41:07 2020 +1300 libgit2: upgraded to version 0.99.0 '(closes' '#2305).' commit db48daaf8edb982e1178a0038dd23ec2e11fa561 Author: Alan Garny '' Date: Thu Mar 26 15:04:33 2020 +1300 libgit2: binaries for version 0.99.0 '(#2305).' commit d62b159cf95730acf113362664b86adbb1f70600 Author: Alan Garny '' Date: Thu Mar 26 14:54:11 2020 +1300 libgit2: binaries for version 0.99.0 '(#2305).' commit 24b0ba037206a215f72a98d39d20e67de526d4ac Author: Alan Garny '' Date: Thu Mar 26 14:51:08 2020 +1300 libgit2: version 0.99.0 now requires the major version in the filename '(#2305).' commit 9abf8484362885a2e05129fe68fc3c470fe73480 Author: Alan Garny '' Date: Thu Mar 26 11:56:53 2020 +1300 OpenSSL: upgraded to version 1.1.1e '(#2310).' commit 8302b448af2a130677a0ec80630e8c43dc6512d8 Author: Alan Garny '' Date: Mon Mar 23 16:02:06 2020 +1300 Slight update to our downloads page '(#2305).' commit 83995ad1f7a379f1a9d6264c4a0cd4ef95ce4b82 Author: Alan Garny '' Date: Mon Mar 23 15:58:39 2020 +1300 PMR support: ported our libgit2-related code to version 0.99.0 '(#2305).' commit 37b1a2f7620b9c3b0923e022baf2bcb50f6e2896 Author: Alan Garny '' Date: Mon Mar 23 15:57:54 2020 +1300 libgit2: binaries for version 0.99.0 '(#2305).' commit 2c2d2f7fabb6fd53ae1e7dd630e0c0831de207eb Author: Alan Garny '' Date: Mon Mar 23 15:40:22 2020 +1300 libgit2: upgraded to version 0.99.0 '(#2305).' commit f88280ef7a3af68a80a9192aabf44ce96b175e5d Merge: 9fdcb0c94 b71947729 Author: Alan Garny '' Date: Mon Mar 23 10:59:32 2020 +1300 Mesa: upgraded to version 20.0.2 '(#2311),' commit b719477298de6a73e2e9f17313d77a8aa5c8582c Author: Alan Garny '' Date: Mon Mar 23 10:10:02 2020 +1300 Slight update to our downloads page '(#2311).' commit f24976785885a2d32cd88875dd1eccf751d90e2e Author: Alan Garny '' Date: Mon Mar 23 10:08:56 2020 +1300 Mesa: binary for version 20.0.2 '(#2311).' commit dfe3536cf056a8b41e8e63a88413953b9f022b6c Author: Alan Garny '' Date: Mon Mar 23 10:00:11 2020 +1300 Mesa: upgraded to version 20.0.2 '(#2311).' commit 9fdcb0c94b7f28616ed45b93bf9311d1442b3863 Merge: 90b09d1d5 9c7a1c400 Author: Alan Garny '' Date: Fri Feb 28 18:31:33 2020 +1300 Mesa: upgraded to version 20.0.0 '(closes' '#2306).' commit 9c7a1c400c37801ce53b1d3e05881a1301baccc7 Author: Alan Garny '' Date: Fri Feb 28 16:16:52 2020 +1300 Slight updates to our downloads pages '(#2306).' commit 9545a3258818aecf318c35905adc66fc0310041e Author: Alan Garny '' Date: Fri Feb 28 16:14:23 2020 +1300 Mesa: binary for version 20.0.0 '(#2306).' commit 9d2a803781ed9ce352f58bce3bc2190345adb922 Author: Alan Garny '' Date: Fri Feb 28 16:02:15 2020 +1300 Mesa: upgraded to version 20.0.0 '(#2306).' commit 90b09d1d5b27e48ab35d0552b34d890612f0339a Merge: f4aded802 db1dd56da Author: Alan Garny '' Date: Thu Feb 20 15:00:35 2020 +1300 Some minor cleaning up. commit db1dd56da6255014e932259b9e8b1cb0b2c44f5b Author: Alan Garny '' Date: Thu Feb 20 14:08:28 2020 +1300 Slight update to our Jupyter notebook. So that it can use our new Python 'interface!' commit c323d79e1b70210d8c1c19db6945e4bea1906275 Author: Alan Garny '' Date: Thu Feb 20 13:32:02 2020 +1300 Slight changes to our Lorenz SED-ML file / COMBINE archive. commit f4aded802e29eb508b751348ab6c1fdffc676d1a Merge: 74a7e9b41 e98727d0d Author: Alan Garny '' Date: Fri Feb 14 16:03:25 2020 +1300 New snapshot. commit e98727d0d4d83893a13e02636b9a708f5bec0961 Author: Alan Garny '' Date: Fri Feb 14 15:31:53 2020 +1300 New snapshot. commit 74a7e9b41700f373c867693c788241500bd73ed3 Merge: df56c43cf a3edca5f6 Author: Alan Garny '' Date: Fri Feb 14 15:29:39 2020 +1300 CellML support: improved the generation of runtime '(closes' '#2285).' commit a3edca5f60d4a93c08a232361034e495701609ff Author: Alan Garny '' Date: Fri Feb 14 14:51:34 2020 +1300 Slight updates to our downloads and what is new pages '(#2285).' commit 0e2319f882243f58ad048bad8b27f21e4cbd0907 Author: Alan Garny '' Date: Fri Feb 14 14:45:38 2020 +1300 Reverted part of commits 7dce10c34, 683f9df4b, f3da3f05c, 616d61b86 and 264b434a2. commit dc7098830546dc39e91e03a20919f6bac97f6607 Merge: 264b434a2 df56c43cf Author: Alan Garny '' Date: Thu Feb 13 17:55:10 2020 +1300 Merge branch ''\''master'\''' into issue2285. commit df56c43cf118584aa928b28f028097a240de6a79 Merge: ece521b4e 41b8f9110 Author: Alan Garny '' Date: Thu Feb 13 17:54:32 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs '(closes' '#2299).' commit 41b8f9110e7b6276d8c66881eb27b43c31693969 Author: Alan Garny '' Date: Thu Feb 13 17:24:42 2020 +1300 Slight update to our downloads page '(#2299).' commit e1874e473876f3ea036fb642a5e4970f95e51ea5 Author: Alan Garny '' Date: Thu Feb 13 17:23:29 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs '(#2299).' We used to compare using 'qIsNull()' and then, at some point, we replaced it with 'qFuzzyCompare()' which ought to be the correct way of doing things except that it 'doesn'\''t' work with NAN '(and' probably 'INF)' values. At least, not in release mode '(yes,' everything works fine in debug 'mode!),' so we are now also checking for INF and NAN values. commit 264b434a225958d1fa1bd9ac930ea4d05e17c2a2 Author: Alan Garny '' Date: Thu Feb 13 15:23:40 2020 +1300 Plugins dialog: make categories checkable if they contain selectable plugins. This is part of our work on issue '#2285.' commit 616d61b86c792acea70a7b3a23112111dc2ab99f Author: Alan Garny '' Date: Thu Feb 13 15:00:41 2020 +1300 Plugins dialog: show/hide non-selectable plugins. This is part of our work on issue '#2285.' commit af3b6c48fd9c5129fa097250a91293e1c339edc1 Author: Alan Garny '' Date: Thu Feb 13 14:40:03 2020 +1300 Some minor cleaning up. commit f3da3f05c05fe1806d24176c454fff2ceb9faf12 Author: Alan Garny '' Date: Wed Feb 12 18:00:31 2020 +1300 Plugins/preferences dialog: make sure that, the first time round, the description is correct. This is part of our work on issue '#2285.' commit 683f9df4b18244271e5d0fd2a11bbef8722fd910 Author: Alan Garny '' Date: Wed Feb 12 17:15:35 2020 +1300 Plugins dialog: make sure that we can see the check boxes and icons. This is part of our work on issue '#2285.' commit dbc87b32f55316fc1d2a324100628c6a9e53817a Author: Alan Garny '' Date: Wed Feb 12 16:42:23 2020 +1300 Some minor cleaning up. commit 7dce10c342edaf48b73ffa0064a07ce1936629a9 Author: Alan Garny '' Date: Wed Feb 12 15:26:06 2020 +1300 Plugins and preferences dialog: improved our use of tree views. This is part of our work on issue '#2285.' commit 5215a3848fb0ff66885d7ca8dc6eb54db75fa7e9 Author: Alan Garny '' Date: Mon Feb 10 17:53:54 2020 +1300 Some minor cleaning up. commit d49e2bd8f7f52008424a48324a3ba2d7e32a9dbd Merge: cb0237f84 ece521b4e Author: Alan Garny '' Date: Mon Feb 10 16:51:49 2020 +1300 Merge branch ''\''master'\''' into issue2285. commit ece521b4ee54e51bbe6bf82295b7e76082a364e5 Merge: 6d212ca3b 2083b26d6 Author: Alan Garny '' Date: Mon Feb 10 16:51:09 2020 +1300 Graph Panel widget: fixed a small problem that resulted in the legend being misplaced when exporting a graph panel '(closes' '#2297).' commit 2083b26d668e27c6c1f1df3618ef695d4b6244a6 Author: Alan Garny '' Date: Mon Feb 10 16:19:33 2020 +1300 Slight update to or downloads page '(#2297).' commit b9dc7194004dc8573d52f1d40ccd151c9c88983d Author: Alan Garny '' Date: Mon Feb 10 16:14:47 2020 +1300 Graph Panel widget: fixed an issue that resulted in the legend being misplaced when exporting a graph panel '(#2297).' commit badc44dae18b0eb9b36a3583c5662f90469bfc1d Author: Alan Garny '' Date: Mon Feb 10 11:12:50 2020 +1300 Some minor cleaning up. commit cb0237f84b1f84c98d818193b578f8f30fee5935 Author: Alan Garny '' Date: Wed Feb 5 17:30:00 2020 +1300 Some minor cleaning up. commit 0945f1df4e7a84039755d95541f35592cb441062 Author: Alan Garny '' Date: Wed Feb 5 17:11:25 2020 +1300 CellML support: improved the speed with which we update our runtime '(#2285).' commit 32caa507baa3ba9975dc955bce59338a95ab75e1 Merge: cfad002dd 6d212ca3b Author: Alan Garny '' Date: Wed Feb 5 16:08:42 2020 +1300 Merge branch ''\''master'\''' into issue2285. commit 6d212ca3b84c1471bd730727e0374ef5d2f9be49 Merge: e0dcdb50a 7c3a13ead Author: Alan Garny '' Date: Wed Feb 5 16:06:59 2020 +1300 Some minor cleaning up. commit 7c3a13eadadab13924da73172f74027c62a52091 Author: Alan Garny '' Date: Wed Feb 5 15:18:37 2020 +1300 Some minor cleaning up. commit fce9896abf2b7d6c62a94bce9890b1acdfd24217 Author: Alan Garny '' Date: Wed Feb 5 14:53:54 2020 +1300 Reverted part of commit 0c9e02cf3. I did a bit too much cleaning 'up!' commit cfad002dd04c2ddae1a867a40182c737f1de5482 Merge: e682da9a1 e0dcdb50a Author: Alan Garny '' Date: Wed Feb 5 14:13:08 2020 +1300 Merge branch ''\''master'\''' into issue2285. commit db573dfaef78253f3f20e6aba5f593f2e998c215 Merge: e682da9a1 e0dcdb50a Author: Alan Garny '' Date: Wed Feb 5 14:12:44 2020 +1300 Merge branch ''\''master'\''' into cleaning-up. commit e682da9a1a17ae74802617a19a0eae8e3f985081 Author: Alan Garny '' Date: Wed Feb 5 14:09:51 2020 +1300 Some minor cleaning up. commit f6075c33825e31991b455d8e93336f7397439d23 Author: Alan Garny '' Date: Wed Feb 5 14:00:34 2020 +1300 Some minor cleaning up. commit 776b7f936b210dc06200184aa4aba82394924799 Author: Alan Garny '' Date: Wed Feb 5 13:51:55 2020 +1300 Some minor cleaning up. commit 1d552c27a53697f54b96d788978ee707f53e2307 Author: Alan Garny '' Date: Wed Feb 5 13:32:32 2020 +1300 Some minor cleaning up. commit 549a4ecf810c9d12075e4dac718721c38eba6fcb Author: Alan Garny '' Date: Wed Feb 5 13:14:46 2020 +1300 Some minor cleaning up. commit 0c9e02cf333377d787e4e3dd6a28485d7380e88c Author: Alan Garny '' Date: Wed Feb 5 13:13:57 2020 +1300 Some minor cleaning up. commit e0dcdb50a34078f65d37a17929f6250ed3ef2317 Merge: e94033e73 dc121d836 Author: Alan Garny '' Date: Wed Feb 5 11:55:48 2020 +1300 Cleaning up. commit dc121d836021aaaf2e77fad6624d7b5947dcfc43 Author: Alan Garny '' Date: Tue Feb 4 17:36:41 2020 +1300 Some minor cleaning up. commit 4edb0305b9ac0823ec240e58d3ad23487faa81f4 Author: Alan Garny '' Date: Tue Feb 4 17:21:41 2020 +1300 Some minor cleaning up. commit 889a50558acb681bf4b10dd87dea35501e6b3f35 Author: Alan Garny '' Date: Tue Feb 4 16:21:26 2020 +1300 Some minor cleaning up. commit 31a7df4c0df5acf7674f7fdf8931fa12716a6528 Author: Alan Garny '' Date: Tue Feb 4 16:13:16 2020 +1300 Some minor cleaning up. commit 23d4c2f088b27b63083b801541274b0b44401883 Author: Alan Garny '' Date: Tue Feb 4 14:49:35 2020 +1300 Some minor cleaning up. commit ab8b775f19253fe3088407d56f176dc0478afc6f Author: Alan Garny '' Date: Tue Feb 4 11:26:13 2020 +1300 Some minor cleaning up. commit 18c008ec0f361eb0c63cd0e45ada93eacdc155bb Author: Alan Garny '' Date: Tue Feb 4 11:24:39 2020 +1300 Some minor cleaning up. commit 6309d4a8f8373a9db16c4f66fcca7a2746312f90 Author: Alan Garny '' Date: Tue Feb 4 10:52:03 2020 +1300 Some minor cleaning up. commit e94033e73a746c8464a95c5fdf3f926b9f33e05e Merge: 9eda69688 968153727 Author: Alan Garny '' Date: Tue Feb 4 09:34:28 2020 +1300 CellML Text view: greatly reduced the time and memory required to do syntax highlighting '(closes' '#2284).' commit 968153727a9c592b5d4db077be7d87b18ab57eb5 Author: Alan Garny '' Date: Mon Feb 3 17:52:06 2020 +1300 Slight updates to our downloads and what is new pages '(#2284).' commit 6f685ee9a878f4656e0d6d60614af8bc3ba3d45b Author: Alan Garny '' Date: Mon Feb 3 17:46:32 2020 +1300 Some minor cleaning up. commit 7396401b5bacdd594730b4e7c3795d8df4094a90 Author: Alan Garny '' Date: Mon Feb 3 17:39:24 2020 +1300 Some minor cleaning up. commit f4330e97ed8915ef0e21ef19bc3295f92ed128cd Author: Alan Garny '' Date: Mon Feb 3 17:19:39 2020 +1300 CellML Text view: improved our lexer by not keeping track of both a QString and a QByteArray version of our full text '(#2284).' We are only dealing with the QByteArray version, which means that we 'don'\''t' have to convert QByteArrays to QStrings anymore '(in' 'fullTextPosition()),' something that was very time consuming. This also resulted in a lot of cleaning up and of minor speedups here and there. commit 21239582b49561cb54200265ce41316d9bf3a9e4 Author: Alan Garny '' Date: Fri Jan 31 12:35:47 2020 +1300 Some minor cleaning up. commit ac0d29f911a3660c28ab5395540f2c46d0c2b0c1 Author: Alan Garny '' Date: Fri Jan 31 12:21:56 2020 +1300 CellML Text view: slight improvements to our lexer '(#2284).' commit 0216e99a430b54f206d9950abf2364ad385f414f Author: Alan Garny '' Date: Fri Jan 31 12:04:52 2020 +1300 Some minor cleaning up. commit 51f6a97744f5c612f21761d3100a49e9534249e3 Author: Alan Garny '' Date: Fri Jan 31 11:08:59 2020 +1300 Some minor cleaning up. commit c3ce2ac4837cb46f529e44be9f84009ef8dd3863 Author: Alan Garny '' Date: Fri Jan 31 10:59:01 2020 +1300 CellML Text view: slight improvements to our lexer '(#2284).' Also some minor cleaning up. commit 81bb8c1488367539e4e2ce19e54f81bc68bb3ad7 Author: Alan Garny '' Date: Fri Jan 31 10:01:27 2020 +1300 CellML Text view: some minor refactoring of our lexer code '(#2284).' commit d73a54485c01208eb7684bf82517850ddecdd7c0 Author: Alan Garny '' Date: Fri Jan 31 09:53:07 2020 +1300 CellML Text view: increased the size of chunk of text to style '(#2284).' commit 7f6a53f93d31df99243aae1b0fe7d7cceb4c126d Author: Alan Garny '' Date: Fri Jan 31 09:35:45 2020 +1300 Some minor cleaning up. commit 64610d43be70e308db0bfd6d52a88f00ef8e767e Author: Alan Garny '' Date: Thu Jan 30 18:11:26 2020 +1300 CellML Text view: style a CellML file in chunks '(#2284).' This means that for very big CellML file we 'don'\''t' end up with OpenCOR using GBs of RAM. commit b7b8acbe1ece19b7fca6dd284d9f6854218c918c Author: Alan Garny '' Date: Thu Jan 30 16:48:43 2020 +1300 CellML Text view: slight improvement to our lexer. commit 9eda696887ae28099e87c1f97f83f9f5f4bba069 Author: Alan Garny '' Date: Wed Jan 22 12:44:18 2020 +1300 Some minor cleaning up. commit c1cd761b145f60d4549cf42070077938312c041a Merge: d7d77df76 bed39e642 Author: Alan Garny '' Date: Wed Jan 22 12:32:54 2020 +1300 Removed references to team@opencor.ws commit bed39e64298d00c7e17179a94981b0aa56127a47 Author: Alan Garny '' Date: Wed Jan 22 11:41:21 2020 +1300 Removed references to team@opencor.ws. commit d7d77df769da0b956aa7deebf72f614765d8d4f4 Merge: 96a6abb8e c5d7dc98c Author: Alan Garny '' Date: Tue Jan 21 07:50:53 2020 +1300 New snapshot. commit c5d7dc98c3fca501eabd84428ec2c0323e46e984 Author: Alan Garny '' Date: Mon Jan 20 18:17:24 2020 +1300 Slight update to our downloads script and page. ... to account for the fact that we are now distributing a '`.pkg`' file on macOS rather than a '`.dmg`' one. commit a25d418df660a87c0cfad8be5cff8584885d2d07 Author: Alan Garny '' Date: Mon Jan 20 18:03:33 2020 +1300 New snapshot. commit 96a6abb8eaba27979551188c066d5f50cafe2b47 Merge: 95ee8d53f ea951951c Author: Alan Garny '' Date: Mon Jan 20 18:01:04 2020 +1300 Fixed an issue with reloading a SED-ML file / COMBINE archive potentially crashing OpenCOR '(closes' '#2290).' commit ea951951c5081625bb382066eb1c29be1b10a4ee Author: Alan Garny '' Date: Mon Jan 20 17:09:10 2020 +1300 Slight update to our downloads page '(#2290).' commit 5a9ab30a2b034152d9a9fbd643c3b29476db4e0c Author: Alan Garny '' Date: Mon Jan 20 17:04:48 2020 +1300 Simulation Experiment view: improved the way we check graph panels and graphs. commit f92f607a3d92db7bb2af9e790f58c58f8700ea5b Author: Alan Garny '' Date: Mon Jan 20 16:08:24 2020 +1300 Fixed an issue with the reloading of a SED-ML file / COMBINE archive potentially crashing OpenCOR '(#2290).' commit dd6341da28e38249aa258b0cdf0a2896816dcbfc Author: Alan Garny '' Date: Mon Jan 20 13:38:30 2020 +1300 Some minor cleaning up. commit 95ee8d53f1b79d85b8d0fabec91df46ecbab38a9 Merge: b504b488b c4f8ad400 Author: Alan Garny '' Date: Mon Jan 20 12:42:31 2020 +1300 Removed support for Windows 7 '(closes' '#2288).' commit c4f8ad40011c755713785ea8a32c91871ab6c0bd Author: Alan Garny '' Date: Mon Jan 20 11:59:36 2020 +1300 Removed support for Windows 7 '(#2288).' commit b504b488b84292719d8e050962f43260fbc5d683 Merge: 391bbc7d5 369d3e80b Author: Alan Garny '' Date: Fri Jan 17 20:00:04 2020 +1300 General: provided a shortcut to reload a file '(closes' '#2286).' commit 369d3e80b0f616c811dedba3855c70e0e27cedd8 Author: Alan Garny '' Date: Fri Jan 17 12:05:21 2020 +1300 Slight update to our downloads page '(#2286).' commit 4ed81feeada6c750342694e5361a1a2f0e228780 Author: Alan Garny '' Date: Fri Jan 17 12:01:20 2020 +1300 General: provide a shortcut to reload a file '(#2286).' commit 391bbc7d546ecf0b7dfee78544dee6e0d9cf2193 Merge: 6e30e6fc3 d638b6f44 Author: Alan Garny '' Date: Fri Jan 17 10:07:11 2020 +1300 Mesa: upgraded to version 19.3.2 '(closes' '#2281).' commit d638b6f4417d97946dcde314435ae9183d5b974d Merge: 020aa50a9 6e30e6fc3 Author: Alan Garny '' Date: Thu Jan 16 16:16:43 2020 +1300 Merge branch ''\''master'\''' into issue2281 commit 6e30e6fc3f01590bd641922beb00c8d20d01dc9d Author: Alan Garny '' Date: Thu Jan 16 16:07:00 2020 +1300 Some minor cleaning up. commit 020aa50a98d8b86697c3f7955301b286f357dab3 Author: Alan Garny '' Date: Thu Jan 16 15:35:31 2020 +1300 Slight update to our downloads page '(#2281).' commit d89f5b39f21531e70ce30e32f010ff5d7dc81c05 Author: Alan Garny '' Date: Thu Jan 16 15:32:17 2020 +1300 Mesa: keep using SCons '(#2281).' They moved to meson, but not sure how to get the same build as with SCons, so keep using it for now. commit 312527e66e8dc2524de3ac8e8633596ea3f00d65 Author: Alan Garny '' Date: Thu Jan 16 15:30:30 2020 +1300 Mesa: binary for version 19.3.2 '(#2281).' commit be01355b3ef645fa25909950d47a3f4351cc9f73 Author: Alan Garny '' Date: Thu Jan 16 15:20:45 2020 +1300 Revert '"Mesa:' require meson to build rather than 'SCons."' This reverts commit 3476b706803f102549fffbaf4d0f5ce130f118d8. commit 0d73f1026dd81197bd3244979e9f438edfa0d4ce Merge: 3476b7068 303641f39 Author: Alan Garny '' Date: Thu Jan 16 14:51:45 2020 +1300 Merge branch ''\''master'\''' into issue2281. commit 3476b706803f102549fffbaf4d0f5ce130f118d8 Author: Alan Garny '' Date: Thu Jan 16 14:51:12 2020 +1300 Mesa: require meson to build rather than SCons. commit 303641f39886ba77ce63284bf8880645e63153cc Merge: 6bea32568 857a122fa Author: Alan Garny '' Date: Thu Jan 16 14:50:04 2020 +1300 libgit2: upgraded to version 0.28.4 '(closes' '#2280).' commit 1971a27e4664938089469069e0518e6840d58ea8 Author: Alan Garny '' Date: Thu Jan 16 14:36:53 2020 +1300 Mesa: upgraded to version 19.3.2 '(#2281).' commit 857a122fa02577f8e027048e62da7e530b8e6771 Author: Alan Garny '' Date: Thu Jan 16 14:10:54 2020 +1300 Slight update to our downloads page '(#2280).' commit bc0eec0be542c51cd3b968246dc6651bf1cb47a9 Author: Alan Garny '' Date: Thu Jan 16 14:10:42 2020 +1300 libgit2: binaries for version 0.28.4 '(#2280).' commit 3ef762b554ff6242ea2c560433b43904ddb98732 Author: Alan Garny '' Date: Thu Jan 16 13:56:19 2020 +1300 libgit2: upgraded to version 0.28.4 '(#2280).' commit a9d1b70ec162191c8655de9350b1d1695bdeb693 Author: Alan Garny '' Date: Thu Jan 16 12:54:54 2020 +1300 Oxygen icons: use a hard copy rather than symbolic links. commit 7f7e59626d03e937657f3291cb8eb824c531a318 Author: Alan Garny '' Date: Thu Jan 16 12:20:55 2020 +1300 Oxygen icons: use symbolic links rather than a hard copy. commit 6bea3256818af5ef8a933fb89ad3c57904d7cbb0 Author: Alan Garny '' Date: Thu Jan 16 11:02:36 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS '(#2277).' commit f321c5aa0034710b112ce3b478e09bfb28bf1b78 Merge: 5d0d1ec81 9ff984bb2 Author: Alan Garny '' Date: Thu Jan 16 10:21:53 2020 +1300 Simulation Experiment view: fixed a small GUI glitch on macOS '(closes' '#2277).' commit 9ff984bb2688bdd265d7936649d0d0a13829fe33 Author: Alan Garny '' Date: Thu Jan 16 09:47:58 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS '(#2277).' commit 1b216483b70e902c5d5b159eeacc62b9cb281aa3 Author: Alan Garny '' Date: Wed Jan 15 18:39:52 2020 +1300 Slight update to our downloads page '(#2277).' commit 23211d4788da298d5d7e4d67ea6279425b56749a Author: Alan Garny '' Date: Wed Jan 15 18:37:49 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS '(#2277).' Also cleaned up the relative size of different resizable widgets. commit 5d0d1ec8119de7a27c4e4a22045a8b4171379c23 Merge: bdf3b0334 7a6b811b1 Author: Alan Garny '' Date: Wed Jan 15 15:02:17 2020 +1300 Packaging: only distribute a '`.pkg`' file rather than a '`.dmg`' file that contains our '`.pkg`' file '(closes' '#2275).' commit 7a6b811b152e2fa64ec97636503d03f57bb64332 Author: Alan Garny '' Date: Wed Jan 15 14:27:22 2020 +1300 Packaging: only distribute a '`.pkg`' file rather than a '`.dmg`' file that contains our '`.pkg`' file '(#2275).' commit 5b368105c5393ba07e0a4e0ab51e416906d41a38 Merge: 4944c0c0f bdf3b0334 Author: Alan Garny '' Date: Wed Jan 15 09:35:03 2020 +1300 Merge remote-tracking branch ''\''upstream/master'\''.' commit bdf3b0334ef224b9284d062c8e357f1a1f1f4e55 Author: Alan Garny '' Date: Wed Jan 15 09:34:40 2020 +1300 Simulation Experiment view: updated our French translations. commit 4944c0c0f810fbbf7bcbcb711922136c66edd671 Merge: d719f1765 d3da38638 Author: Alan Garny '' Date: Tue Jan 14 23:32:43 2020 +1300 Merge branch ''\''master'\''' of https://github.com/agarny/opencor. commit d719f17654689630be578dae3fc4abcc8238fb4f Author: Alan Garny '' Date: Tue Jan 14 23:31:15 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel '(closes' '#2271).' commit ec4c41edb73eb6abe4f090f5bb18b38271ab5069 Merge: 680720ba2 2242d93e0 Author: Alan Garny '' Date: Tue Jan 14 23:29:28 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel '(closes' '#2271).' commit 2242d93e0085c7836b2b66c39da0ae6db4e40112 Merge: 197463622 680720ba2 Author: Alan Garny '' Date: Tue Jan 14 22:33:03 2020 +1300 Merge branch ''\''master'\''' into issue2271 commit 197463622581c9b411809c41d34d3929f082fbec Merge: 1a4f60e14 d3da38638 Author: Alan Garny '' Date: Tue Jan 14 20:13:50 2020 +1300 Merge branch ''\''master'\''' into issue2271. commit d3da38638022c4904ecd1b322745cac987deb396 Author: Alan Garny '' Date: Tue Jan 14 20:05:19 2020 +1300 SUNDIALS: upgraded to version 5.1.0 '(closes' '#2272)..' commit 680720ba2246cad4078efa7ed79cc05fb3b84740 Merge: 1f56f742c 6a53a6c38 Author: Alan Garny '' Date: Tue Jan 14 20:04:01 2020 +1300 SUNDIALS: upgraded to version 5.1.0 '(closes' '#2272).' commit 6a53a6c386a86455dbea64f36b1df1eeab3f9b84 Author: Alan Garny '' Date: Tue Jan 14 15:51:29 2020 +1300 Slight update to our downloads page '(#2272).' commit f6f154bf858dd351c90813b6003bfa30816892fc Author: Alan Garny '' Date: Tue Jan 14 15:46:05 2020 +1300 SUNDIALS: binaries for version 5.1.0 '(#2272).' commit 039a714e147112c9d50c7dcc89c80ec28c894bee Author: Alan Garny '' Date: Tue Jan 14 15:36:56 2020 +1300 SUNDIALS: upgraded to version 5.1.0 '(#2272).' commit 1a4f60e149696383fe124a3e3fd7d05222d4fd6c Author: Alan Garny '' Date: Tue Jan 14 13:02:59 2020 +1300 Slight update to our downloads page '(#2271).' commit 01e574239899b9c202629a882b8ce726477d095c Author: Alan Garny '' Date: Tue Jan 14 12:52:47 2020 +1300 Keep track of our old plot 2d annotation SED-ML files '(#2271).' ... and updated our SED-ML files and COMBINE archives. commit 41c85a2a2d327c3b0624300abe311d7181c6c259 Author: Alan Garny '' Date: Tue Jan 14 12:34:43 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes '(#2271).' commit a8f292b167509682b6491aba00263416a84c9305 Author: Alan Garny '' Date: Tue Jan 14 12:23:32 2020 +1300 Graph panel widget: can now customise the font size of the '(main)' title '(#2271).' commit 6569e617dedb0123470befc38f9dae0217b87ccd Author: Alan Garny '' Date: Tue Jan 14 12:22:09 2020 +1300 Some minor cleaning up. commit 302700f04fe67ddce071c3274615b3466cce28bc Author: Alan Garny '' Date: Tue Jan 14 10:50:22 2020 +1300 Some minor cleaning up. commit 292c89263cdccf2e9d10763b03bdb4aa1d26070a Author: Alan Garny '' Date: Mon Jan 13 17:13:03 2020 +1300 Simualtion Experiment view: make sure that everything is in the OpenCOR namespace. commit 0fc539b0a1790efe7f8dd5bc05b077a72122b7d1 Author: Alan Garny '' Date: Mon Jan 13 16:57:19 2020 +1300 Some minor cleaning up. commit 97d01e644e8e4f917ce89a5b9f5c9730684d5063 Author: Alan Garny '' Date: Mon Jan 13 16:53:32 2020 +1300 Graph panel widget: can now customise the font size '(and' 'visibility)' of a legend '(#2271).' commit d634b833cee3d00f48dfcb7fde9e560606318b6f Author: Alan Garny '' Date: Mon Jan 13 16:48:38 2020 +1300 Simualtion Experiment view: always initialise a property that we add. This is just to be on the safe side. commit b68a8630524dfa692dbc644274ee93189b23d863 Author: Alan Garny '' Date: Mon Jan 13 15:25:43 2020 +1300 Some minor cleaning up. commit 92d7c0ac12c606b6deba0b8f105a35e329438742 Author: Alan Garny '' Date: Mon Jan 13 15:19:01 2020 +1300 Some minor cleaning up. commit b13ec7460caed223d5b1d37f21873acde9dbb45e Author: Alan Garny '' Date: Mon Jan 13 14:24:18 2020 +1300 Some minor cleaning up. commit bcb69db60d9e3cabc8edb72fc861e0cf11e7384b Author: Alan Garny '' Date: Mon Jan 13 14:02:36 2020 +1300 Some minor cleaning up. commit 8e7bdadeff7a6930ebd469b9a12d8c6c67bbee0d Author: Alan Garny '' Date: Mon Jan 13 13:56:03 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes '(#2271).' commit e7f3337b7967c7a4071d839958d4ac41f2831039 Author: Alan Garny '' Date: Fri Jan 10 15:59:08 2020 +1300 Some minor cleaning up. commit 7659db0b1bae3e35be4422ef5caf68db360d9ffc Author: Alan Garny '' Date: Fri Jan 10 15:37:10 2020 +1300 Graph panel widget: can now customise the font size of point coordiantes and zoom region coordinates '(#2271).' commit 771e55ba5091c8fa7252c139c690d7bc4c8f0021 Author: Alan Garny '' Date: Fri Jan 10 15:29:18 2020 +1300 Some minor improvement. commit ed5fa0320fb3c7bde2e651acadfcaeae3c2655cb Author: Alan Garny '' Date: Fri Jan 10 11:50:39 2020 +1300 Models: slight updates to our SED-ML files and COMBINE archives. commit 7f9a09e42642b62d9723a61f63e524241bcd9dd9 Author: Alan Garny '' Date: Thu Jan 9 16:48:28 2020 +1300 Models: renamed a couple of COMBINE archives. commit 1f56f742cb1b3c33da9c432569bc266111f94312 Author: Alan Garny '' Date: Wed Jan 8 17:30:33 2020 +1300 Packaging: simplified things on macOS. commit e75a1fa617d90fff232bea84fec4f179f1e268bd Merge: dba70c3a8 99661a5f7 Author: Alan Garny '' Date: Fri Jan 3 16:46:49 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 '(closes' '#2269).' commit 99661a5f73f26ca1c7b3166be95599cc807b9c94 Author: Alan Garny '' Date: Fri Jan 3 16:13:18 2020 +1300 Slight update to our downloads page '(#2269).' commit a4b1705fed94dc8b4c367ea8d34b23f62b721f3a Author: Alan Garny '' Date: Fri Jan 3 16:11:37 2020 +1300 LLVM+Clang: binaries for version 9.0.1 '(#2269).' commit e8543df8489f341930b5271dbdc174035619063e Author: Alan Garny '' Date: Fri Jan 3 12:59:51 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 '(#2269).' commit dba70c3a8b650d0a2edfe673134d9d512d9b59a3 Merge: ea3202727 1610308a7 Author: Alan Garny '' Date: Sat Dec 21 20:04:41 2019 +1300 Fixed a small issue with our splash screen window on Windows. Also, some minor cleaning up. commit 1610308a74d719abd1586f2365f9a66c84772f24 Author: Alan Garny '' Date: Sat Dec 21 18:58:25 2019 +1300 Splash Screen window: make sure that OpenCOR has been initialised on Windows. Indeed, on Windows, we never try the CLI version of OpenCOR '(since' we have a special main.cpp for 'it),' which means that OpenCOR was not initialised as an application prior to showing our splash screen. commit adc6df3641f3bd4c7776c7756e421de72f2e9031 Author: Alan Garny '' Date: Sat Dec 21 18:58:01 2019 +1300 Splash Screen window: renamed our 'closeAndDeleteAfter()' to 'deleteLater().' ... since we 'don'\''t' close and delete anymore, but only delete. commit e146b5f8ce3ac478e31253952f22ec126da78bd1 Author: Alan Garny '' Date: Sat Dec 21 18:48:22 2019 +1300 Some minor cleaning up. commit ea3202727c1cefdff6fbbb14259e35ccc16811e2 Merge: 72b342448 fc56dce00 Author: Alan Garny '' Date: Fri Dec 20 19:18:21 2019 +1300 New snapshot. commit fc56dce00e028966bb5e14e1b893b67838d2de26 Author: Alan Garny '' Date: Fri Dec 20 14:27:38 2019 +1300 New snapshot. commit 72b34244852a75fc18edcf11e1fc6ce871f21a2b Merge: ff7164e91 9459ad5f1 Author: Alan Garny '' Date: Fri Dec 20 14:22:04 2019 +1300 Fixed a couple of issues with our splash screen '(closes' '#2265).' commit 9459ad5f19879bbad2d7600228848cc34507d235 Author: Alan Garny '' Date: Fri Dec 20 12:51:04 2019 +1300 Slight update to our downloads page '(#2265).' commit 4aa99de212991f1298e78d43cd33acc2bb1c0a40 Author: Alan Garny '' Date: Fri Dec 20 12:46:35 2019 +1300 Some minor cleaning up. commit 60006cd3c90b493283c7904c8b55cd8a5b27810a Author: Alan Garny '' Date: Fri Dec 20 12:43:13 2019 +1300 Splash screen: delete ourselves rather than closing ourselves '(#2265).' Since we 'can'\''t' close ourselves anymore. commit 9c63f0ab0312c529af0aba2bcc4eb04b79b7e31d Author: Alan Garny '' Date: Fri Dec 20 12:41:56 2019 +1300 Prevent the splash screen from being closed '(#2265).' This could indeed have happened when the splas screen appearead and we pressed Ctrl+Q before the main window would be created '(and' not necessarily 'showing).' commit 9496364c10a3888684351f5f4389a61ed259de81 Author: Alan Garny '' Date: Fri Dec 20 11:54:23 2019 +1300 Main window: make sure that we keep track of the fact that we are about to quit '(#2265).' Not sure why, but this somehow got removed at some point, which means that we 'couldn'\''t' anymore catch when someone was closing our main window while we were showing our splash 'screen...!' commit 1302d2822210876865d7c12fc23bc32cf8a39b5d Author: Alan Garny '' Date: Fri Dec 20 11:12:47 2019 +1300 Splash screen: 'don'\''t' hide ourselves when pressed '(#2265).' commit 5760de1bd396edb9808785d653ecfda5af84f736 Author: Alan Garny '' Date: Fri Dec 20 09:43:39 2019 +1300 Slight improvements to the way we use our splash screen '(#2265).' commit 94bc4e6ee92de244be1d4128c69400e7ef4acd83 Author: Alan Garny '' Date: Fri Dec 20 09:40:40 2019 +1300 Slight improvements to the way we use our splash screen '(#2265).' commit ff7164e91086d71815573c821cb51940af5d6699 Merge: 80ad6e4b9 821f3d820 Author: Alan Garny '' Date: Thu Dec 19 17:15:49 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled '(closes' '#2263).' commit 821f3d820b515c0d59602a40b85ada16cafb4d16 Author: Alan Garny '' Date: Thu Dec 19 16:43:25 2019 +1300 Slight update to our downloads page '(#2263).' commit 044356cb0a9e4aef1c3343223f9a8ec9d4d5eed4 Author: Alan Garny '' Date: Thu Dec 19 16:39:10 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled '(#2263).' commit 80ad6e4b9242c23a14a3270405a56c3685ee3067 Merge: a1e8dd9e4 64167769d Author: Alan Garny '' Date: Thu Dec 19 11:53:07 2019 +1300 General: 'don'\''t' ask to confirm the overwriting of a file when on macOS 10.15 '(closes' '#2261).' commit 64167769dbb5326fc57aecd350bc2387476f1e4a Author: Alan Garny '' Date: Thu Dec 19 11:15:11 2019 +1300 Some minor refactoring. commit b17d0befa8e91d55765e19b8edbde686bb86504b Author: Alan Garny '' Date: Thu Dec 19 11:12:33 2019 +1300 Some minor cleaning up. commit 37cd0e1151bc22300efa2f7a0f03ed7c5dc053d2 Author: Alan Garny '' Date: Thu Dec 19 11:12:17 2019 +1300 Some minor cleaning up. commit 989919d938d2a8e90b2a78a47f75c218fcac7cee Author: Alan Garny '' Date: Thu Dec 19 11:04:33 2019 +1300 Slight update to our downloads page '(#2261).' commit 53b5d53951b53f5757c9a409c0b1ec2e6095f2cf Author: Alan Garny '' Date: Thu Dec 19 11:03:15 2019 +1300 General: 'don'\''t' ask to confirm the overwriting of a file when on macOS 10.15 '(#2261).' commit a1e8dd9e424126a2ee92002f27b588c246251466 Merge: 324d77d3c 688a7b12c Author: Alan Garny '' Date: Tue Dec 17 18:11:16 2019 +1300 Simulation Experiment view: can now reopen a remote CellML file from a SED-ML file '(closes' '#2191).' commit 688a7b12c43be156061888d25a713f9679141c89 Author: Alan Garny '' Date: Tue Dec 17 17:29:30 2019 +1300 Slight updates to our downloads and what is new pages '(#2191).' commit c25941143c282e3d5f0d61ff599774358f0d0c86 Merge: 2967feaa7 324d77d3c Author: Alan Garny '' Date: Tue Dec 17 17:18:48 2019 +1300 Merge branch ''\''master'\''' into issue2191. commit 324d77d3c41c27515eed62dd0e825ce18b13c0bb Merge: be92b58b4 10447c14b Author: Alan Garny '' Date: Tue Dec 17 17:16:10 2019 +1300 QtWebKit: upgraded to v5.212.0-alpha3 '(#2252).' commit 2967feaa76e4b15a1c8623763f0ae28a8bdaf0fd Author: Alan Garny '' Date: Tue Dec 17 17:14:33 2019 +1300 Simulation Experiment view: make sure that we can reopen a remote CellML file from a remote SED-ML file '(#2191).' commit 10447c14b510c622d2a248ac32b480514d4ee16f Author: Alan Garny '' Date: Tue Dec 17 16:39:49 2019 +1300 Slight updates to our downloads pages '(#2252).' commit 4604764d735c4b030d31f8bfc88419ac17b7db6f Author: Alan Garny '' Date: Tue Dec 17 16:33:48 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 '(#2252).' commit 297e694dd40b9ad19e18d90777845f8193f7f4a6 Author: Alan Garny '' Date: Tue Dec 17 16:20:02 2019 +1300 Some minor cleaning up. commit 3e6850ff8c404ede23e781c42e338444b2a4fad1 Author: Alan Garny '' Date: Tue Dec 17 10:52:26 2019 +1300 QtWebKit package: fixed a small problem in our CMakeLists.txt file '(#2252).' commit 5aa68df8755b203e3bfb727703c8507bff6714b7 Merge: a84489df6 be92b58b4 Author: Alan Garny '' Date: Mon Dec 16 17:53:26 2019 +1300 Merge branch ''\''master'\''' into issue2252. commit be92b58b43a8d28875df917fbbaaf69b2fcffa1c Author: Alan Garny '' Date: Mon Dec 16 17:52:25 2019 +1300 Common widget: slight improvement to our 'hideBusyWidget()' method. Now, we can really see the final state of a progress busy widget. commit a84489df69ceec44dbe9baa78b6636ba5f31ef78 Author: Alan Garny '' Date: Mon Dec 16 16:27:01 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 '(#2252).' commit ab28d7e20ed271b3a1c44c1e1f566ba81dc112b0 Author: Alan Garny '' Date: Mon Dec 16 16:26:35 2019 +1300 'Don'\''t' only build QtWebKit '(#2252).' commit 890f711a114ab2cc4f87c6cb7cf4d1770a4fb584 Author: Alan Garny '' Date: Mon Dec 16 15:40:07 2019 +1300 QtWebKit: make sure that we use the correct release tag '(#2252).' commit 192a0c26c5a1fe28c69474fa21c6137b8a9a2364 Merge: e33783d06 539c7fcb1 Author: Alan Garny '' Date: Mon Dec 16 15:37:07 2019 +1300 Merge branch ''\''master'\''' into issue2252. commit e33783d06f946affd91ff9efa0ec531837defddf Author: Alan Garny '' Date: Mon Dec 16 13:36:54 2019 +1300 Partially reverting commit cc29b06. We tried to optimise things a bit too much, but for example we need ICU on Linux to build 'QtWebKit!' commit 539c7fcb13e100ff4e8a51e5f69978457777093a Merge: 76a1ffc47 ae303c434 Author: Alan Garny '' Date: Fri Dec 13 18:33:02 2019 +1300 New snapshot. commit ae303c4342362f46493a20ddbd4e7504622c57e2 Author: Alan Garny '' Date: Fri Dec 13 16:04:49 2019 +1300 Some minor cleaning up. commit fa7aec731caa68d68525815e42c5540ca4ababe3 Author: Alan Garny '' Date: Fri Dec 13 14:11:14 2019 +1300 New snapshot. commit 76a1ffc4777f7fcc656e4f7b5954096e524d4a7f Merge: afe3b538f 8650758b3 Author: Alan Garny '' Date: Fri Dec 13 14:07:01 2019 +1300 Python package: updated our macOS binary '(closes' '#2256).' commit 8650758b3ebddcf5920b4a72c3ac99b5b3a8d669 Author: Alan Garny '' Date: Fri Dec 13 13:28:48 2019 +1300 Python support: added a test to ensure that we can import all the modules that we should have '(#2256).' commit 6fccf814ed1d14f6ac6ffb3e509122ef001535eb Author: Alan Garny '' Date: Fri Dec 13 11:19:50 2019 +1300 Python package: update our macOS binary '(#2256).' The old one 'didn'\''t' contain 'lzma!' commit afe3b538fcd89157f6e007b54308779acadd32c4 Merge: 9f90a3b16 a377cd5c9 Author: Alan Garny '' Date: Thu Dec 12 21:55:03 2019 +1300 Python support: added some Python-based tests '(closes' '#2178).' commit a377cd5c931583f5ddc3e7aecbac19bded2bfd53 Author: Alan Garny '' Date: Thu Dec 12 19:34:17 2019 +1300 Python support: test results for a Windows debug are different on different machine '(#2178).' So, using the test results from our CI machine. 'Ridiculous!' commit b3baf3f2efda1580490fd2e55ad7df414db23861 Author: Alan Garny '' Date: Thu Dec 12 18:55:14 2019 +1300 Python support: test results for a Windows release are different on different machine '(#2178).' So, using the test results from our CI machine. 'Ridiculous!' commit aa710320468867f514d9f74b046dbbf4b3c932ab Author: Alan Garny '' Date: Thu Dec 12 18:14:10 2019 +1300 Python support: distinguish between the release and debug versions of our test results '(#2178).' And yes... not only are there slight differences between platforms, but also between 'targets!' commit 26237e2eefb2816ed115ab98e277387af33061c1 Author: Alan Garny '' Date: Thu Dec 12 17:41:15 2019 +1300 Python support: test results for Windows and Linux '(#2178).' commit 99ca2373ed7f42a7d5fcd9ec1cc2241c87ac6c2d Author: Alan Garny '' Date: Thu Dec 12 17:26:10 2019 +1300 Python support: have our tests use the results for the current platform '(#2178).' commit 1ba1c577f85b9b7bcc78897a3d2f37c7bf679ac8 Author: Alan Garny '' Date: Thu Dec 12 17:25:08 2019 +1300 Python support: added platform-specific expected results '(#2178).' Still need to update our Windows and Linux ones though. commit db315e658f62474b3bf2b840454419824678508a Author: Alan Garny '' Date: Thu Dec 12 17:13:31 2019 +1300 Python support: use full accuracy for numbers '(#2178).' Indeed, we are having problems with our release version on Windows, which would require a one significant digit accuracy to get our tests to pass. This is clearly ridiculous, so instead we are going to use full accuracy and then distinguish between our 'platforms...!' commit ee49c7cfa29af8a1fa46282757d48594322e049e Author: Alan Garny '' Date: Thu Dec 12 15:46:01 2019 +1300 Python support: addresses issues from codefactor '(#2178).' See https://www.codefactor.io/repository/github/opencor/opencor/pull/2255. commit c2e8949a1d3dfb2e9fb1602b9c0b94a7c6f9deb5 Author: Alan Garny '' Date: Thu Dec 12 15:26:15 2019 +1300 Slight update to our downloads page '(#2178).' commit 6c7100faf9118bd033d1b1d39eebf3356e2bc91a Author: Alan Garny '' Date: Thu Dec 12 15:10:53 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI '(e.g.' using a Python 'script)' on Windows '(#2178).' See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit e53c9630519357b6f88609af0cacbdb1a90400f2 Author: Alan Garny '' Date: Thu Dec 12 14:43:12 2019 +1300 Some minor cleaning up. commit 370c593eeac26225fc03619d4ccab00d4cc21629 Author: Alan Garny '' Date: Thu Dec 12 14:29:39 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI '(e.g.' using a Python 'script)' on Windows '(#2178).' See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit bd6864f5718a80b66cdf6a9ddf7f094c6e8fbeb8 Author: Alan Garny '' Date: Thu Dec 12 10:20:10 2019 +1300 Python support: test our numerical results using two significant digits '(#2178).' Three significant digits are indeed still too much. commit fccf5d06786555134c38bd27f3641699cbfe6881 Author: Alan Garny '' Date: Thu Dec 12 10:15:21 2019 +1300 Python support: test our numerical results using three significant digits '(#2178).' commit 783d965e695520034a1d9e4d4b22828750894000 Author: Alan Garny '' Date: Thu Dec 12 10:06:01 2019 +1300 Python support: quickly test the full extent of differences in numerical results between platforms '(#2178).' commit c56a8cb4afcd54e10f888bf2f8642b3536578d8d Author: Alan Garny '' Date: Thu Dec 12 09:29:24 2019 +1300 Data store interface: got rid of all our assertions. Indeed, although those methods are not officially part of our Python wrappers, they could still be called from Python. So, we need to ensure that they 'don'\''t' cause problems '(if' the original assertion was to be 'false),' which is what we are already doing for methods that are officially part of our Python wrappers. commit 7fc8976ec19f37b98455a47310810c11a820413c Author: Alan Garny '' Date: Wed Dec 11 20:23:39 2019 +1300 Python support: fixed a small Unicode '(?)' problem in one of our tests '(#2178).' This was failing on Windows. commit d1661b78f9fdeea534ac28c2ba45fb888de856ff Author: Alan Garny '' Date: Wed Dec 11 20:20:15 2019 +1300 Python support: use 2-digit precision for our Python values '(#2178).' Indeed, 3 digits still raises issues between 'platforms!' commit 09e26c4e714c528eb44b4f241508bcc277bfd2c2 Author: Alan Garny '' Date: Wed Dec 11 19:35:43 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests '(#2178).' This was indeed causing problems between platforms. commit 90625cfe9b21626a48873083af257ad1a1878b08 Author: Alan Garny '' Date: Wed Dec 11 19:27:28 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests '(#2178).' This was indeed causing problems between platforms. commit d82945952b821c70b0ca7f193b1afa2361932121 Author: Alan Garny '' Date: Wed Dec 11 19:14:09 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests '(#2178).' This was indeed causing problems between platforms. commit e32290a9e0c4294b4e7aecc08cf6efd5fa54a539 Author: Alan Garny '' Date: Wed Dec 11 19:03:43 2019 +1300 Python support: slight update to our the number of digits we want to print our Python tests '(#2178).' This is so that we 'don'\''t' floating rounding issues between platforms. commit f65d47464b6ceaa3b115318f5a690ffb30e9c049 Author: Alan Garny '' Date: Wed Dec 11 18:47:38 2019 +1300 Python support: reorganised our Python tests '(#2178).' So that we can run every test individually, if needed. commit 7ee92f1e50212594907585cc09f11f07fb9e3552 Author: Alan Garny '' Date: Wed Dec 11 18:31:24 2019 +1300 Python support: some minor refactoring of our Python tests '(#2178).' commit 955c6f3b87a3aa2a1dd7fb94312e0e82c1b29e94 Author: Alan Garny '' Date: Wed Dec 11 18:22:05 2019 +1300 Some minor cleaning up. commit 90c89351e26552d1a8367900c1e28e8c18d309fd Author: Alan Garny '' Date: Wed Dec 11 18:15:56 2019 +1300 Python support: added Python tests for vdP28 '(#2178).' commit e5ec9ad95f6ffe9b8dd33fc3eb5cc48c80b7402a Author: Alan Garny '' Date: Wed Dec 11 18:12:20 2019 +1300 Python support: added Python tests for N62 '(#2178).' commit 62de089f09a8356e1a9da9e5f6e6aa24168d5460 Author: Alan Garny '' Date: Wed Dec 11 18:06:03 2019 +1300 Python support: added Python tests for HH52 '(#2178).' commit fa7c7b6e3e8b1f1d1a688da7767ad73db7809e1c Author: Alan Garny '' Date: Wed Dec 11 17:54:14 2019 +1300 Some minor cleaning up. commit 0ae900b48c63e5f11aa30144d3f1282b9f397b6c Author: Alan Garny '' Date: Wed Dec 11 17:47:51 2019 +1300 Some minor cleaning up. commit 9fa25ec26f024b44cb3277340487c9b4c1dd8042 Author: Alan Garny '' Date: Wed Dec 11 17:27:26 2019 +1300 Python support: some work on coverage testing SimulationData '(#2178).' commit 9140a7a64254e30f515fee68f004ab0971c0b7c3 Author: Alan Garny '' Date: Wed Dec 11 17:08:07 2019 +1300 Python support: some minor refactoring of our coverage tests '(#2178).' commit e8e37e83af6a23da98b280a7716667d1dc65a55a Author: Alan Garny '' Date: Wed Dec 11 16:55:08 2019 +1300 Python support: have our coverage testing use a DAE model '(#2178).' commit 19a86396f4d2d848f106f8caffd01d4a45ffc547 Author: Alan Garny '' Date: Wed Dec 11 16:51:56 2019 +1300 Python support: some work on coverage testing SimulationData '(#2178).' commit 23d2eff396eda2439d8111040732a8425d978386 Author: Alan Garny '' Date: Wed Dec 11 16:31:21 2019 +1300 Some minor cleaning up. commit a19099d6a6e662ec1cd4fdacbc93445c12004124 Author: Alan Garny '' Date: Wed Dec 11 16:28:16 2019 +1300 Python support: some work on coverage testing SimulationData '(#2178).' commit cb20f42a69dcf4f28adff4cb080f4ab39d8dcc42 Author: Alan Garny '' Date: Wed Dec 11 16:27:48 2019 +1300 Some minor cleaning up. commit 5ead3a6bc5514b0131409cf35e1d374284ab1621 Author: Alan Garny '' Date: Wed Dec 11 16:13:54 2019 +1300 Some minor cleaning up. commit e993f61e886c8ce037ef4bf64eca3fb8b4d3c730 Author: Alan Garny '' Date: Wed Dec 11 16:06:30 2019 +1300 Some minor cleaning up. commit ae158e4e017346c88e4a191a93581f3af8bf9b45 Author: Alan Garny '' Date: Wed Dec 11 16:04:14 2019 +1300 Some minor cleaning up. commit f7b5c421fe645ac94a99410c74853710b967285a Author: Alan Garny '' Date: Wed Dec 11 16:01:20 2019 +1300 Simulation support: added 'ode_solver_property()' and 'nla_solver_property()' as Python wrappers to our SimulationData class '(#2178).' commit 2ae3ee04a199d866ac45126ecd843f27127ae266 Author: Alan Garny '' Date: Wed Dec 11 15:57:56 2019 +1300 Some minor cleaning up. commit 225b1932776fa50f9e48747222a4e4eef3f4e97a Author: Alan Garny '' Date: Wed Dec 11 15:23:38 2019 +1300 Python support: some work on coverage testing SimulationData '(#2178).' commit 02fef2bcb89d587bce306ee90dfba6ea80903b3f Author: Alan Garny '' Date: Wed Dec 11 14:56:12 2019 +1300 Simulation support: added 'set_value()' as a Python wrapper to our DataStoreValue class '(#2178).' commit 1f82a3acab539bf4754c870881194ee6a569b7e8 Author: Alan Garny '' Date: Wed Dec 11 14:55:31 2019 +1300 Some minor cleaning up. commit fab624e9030b02aca21a74508d80c980f99b9502 Author: Alan Garny '' Date: Wed Dec 11 14:12:05 2019 +1300 Some minor cleaning up. commit d258aa27e14f147129ed13e75cec4b7b2c4f232f Author: Alan Garny '' Date: Wed Dec 11 14:10:28 2019 +1300 Some minor cleaning up. commit 48c203a24949ac80517a0a9c50ad36106ebe71fa Author: Alan Garny '' Date: Wed Dec 11 13:44:33 2019 +1300 Some minor cleaning up. commit d9bb208208dfd4f954dee971e8e1cb85ec0ac709 Author: Alan Garny '' Date: Wed Dec 11 13:24:49 2019 +1300 Python support: renamed our edge tests to coverage tests '(#2178).' commit a04843cc1d1b76d91489de3def7df6e719ce253b Author: Alan Garny '' Date: Wed Dec 11 13:19:43 2019 +1300 Python support: some work on edge testing of DataStore '(#2178).' commit efaa317ea16c38a1373dfba4605ce2c23ea59c0d Author: Alan Garny '' Date: Wed Dec 11 13:19:07 2019 +1300 Some minor cleaning up. commit 583cb968d12723c0a084ea5e43a1f69039f17d5a Author: Alan Garny '' Date: Wed Dec 11 13:10:14 2019 +1300 Some minor cleaning up. commit 980b0f9a334c4c9fa1e19e2eb12eb334317ca1af Author: Alan Garny '' Date: Wed Dec 11 12:51:00 2019 +1300 Python support: some work on edge testing a list of DataStoreVariable items '(#2178).' commit 0455b2fe7421123e70b1024860fa46fcbae66fb6 Author: Alan Garny '' Date: Wed Dec 11 12:48:08 2019 +1300 Some minor cleaning up. commit dd9c541a349087596baa1c31d6762cc81a26dff2 Author: Alan Garny '' Date: Wed Dec 11 12:19:22 2019 +1300 Simulation support: added 'runs_count()' and 'values_count()' as Python wrappers to our DataStoreVariable class '(#2178).' commit 665c98c563ec5379e28cad13cb39f31d08f1614f Author: Alan Garny '' Date: Wed Dec 11 11:24:16 2019 +1300 Python support: some work on edge testing DataStoreVariable '(#2178).' commit f5322cb27087435812c414ad0282cd2e5de7c9ef Author: Alan Garny '' Date: Wed Dec 11 11:15:58 2019 +1300 Some minor cleaning up. commit 390a60bb725de2f497827190c89ccbfe93d74f30 Author: Alan Garny '' Date: Wed Dec 11 11:06:56 2019 +1300 Python support: some work on edge testing DataStoreVariable '(#2178).' commit 3881439c5a352b8bcd45572f737b812d05e139c4 Author: Alan Garny '' Date: Tue Dec 10 19:19:22 2019 +1300 Python support: make sure that we ask to open a valid and existing file '(#2178).' commit c7445148322eb2bc5f3a509e0b8e44daab860ddd Author: Alan Garny '' Date: Tue Dec 10 19:04:13 2019 +1300 Some minor cleaning up. commit 48cae8d0c06135132911bbdca701d543c17269d7 Author: Alan Garny '' Date: Tue Dec 10 18:42:03 2019 +1300 Some minor cleaning up. commit 2f37e071d2182df541e91ee0fc1da599adb74369 Author: Alan Garny '' Date: Tue Dec 10 18:20:12 2019 +1300 Python support: partially reverted commit ea352e4b2 '(#2178).' Indeed, we could '(obviously!)' not run our script from the Python Console window, only from the command line. commit 04951dd2f9e344d7d7332e653017420d10949969 Author: Alan Garny '' Date: Tue Dec 10 18:02:07 2019 +1300 Some minor cleaning up. commit 40c61b757a01523c32db9696a69ba648b60c4050 Author: Alan Garny '' Date: Tue Dec 10 17:50:05 2019 +1300 Python support: some minor refactoring our basic tests script '(#2178).' commit d0d1b3e79a93c4cad6995a575c444a3cccb8f632 Author: Alan Garny '' Date: Tue Dec 10 17:47:14 2019 +1300 Python support: prevent the creation of a .pyc file for our imported basictests module '(#2178).' commit ee49d3893f2eefcef164ae4b8c53de768c7d2e42 Author: Alan Garny '' Date: Tue Dec 10 17:42:54 2019 +1300 Scripts: 'don'\''t' protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents '[Python]/bin/jupyter' '(and' therefore our Jupyter console, lab and notebook 'scripts)' from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit fe23804be7c82ebec70ad6bca1412ddbca81d3e6 Author: Alan Garny '' Date: Tue Dec 10 16:59:02 2019 +1300 Python support: some minor refactoring our basic tests script '(#2178).' commit 1f735e2bfa9d74bc35da7eb5eba880d4d923fc78 Author: Alan Garny '' Date: Tue Dec 10 16:40:30 2019 +1300 Python support: renamed our basic tests file '(#2178).' commit 64be3b08970cb11c402211729e9b79a8edb6d53a Author: Alan Garny '' Date: Tue Dec 10 16:33:36 2019 +1300 Python support: added some edge tests '(#2178).' They come from commit 3ff8a2f03. commit 3ff8a2f03fcd1f09a03e19438791cf01d8499aac Author: Alan Garny '' Date: Tue Dec 10 16:26:40 2019 +1300 Pythonh support: removed some of our tests '(#2178).' They are going to be moved to a different Python script. commit ea352e4b258bf6e92da06f7f9a84a797b4b7a815 Author: Alan Garny '' Date: Tue Dec 10 16:25:35 2019 +1300 Some minor cleaning up. commit 984956e425bbd47f7c1b8869fd41947227f6c80c Author: Alan Garny '' Date: Tue Dec 10 15:33:33 2019 +1300 Some minor cleaning up. commit f482ee1135884e5bdf706d297e95a133a4c6d105 Author: Alan Garny '' Date: Tue Dec 10 15:20:50 2019 +1300 Some minor cleaning up. commit e10069e9709f567179f795b6df0bc00dc79c44f0 Author: Alan Garny '' Date: Tue Dec 10 14:32:53 2019 +1300 Test models: slightly changed the look of one of our curves in the Lorenz SED-ML file / COMBINE archive. commit 61b01c17da3bde9b31d4323f30acb227631b9669 Author: Alan Garny '' Date: Tue Dec 10 14:12:44 2019 +1300 Python support: replace Heun with Forward Euler in our test '(#2178).' commit 30fac6e7900535fb8ff06383202ad75bb817cc2a Author: Alan Garny '' Date: Tue Dec 10 13:53:59 2019 +1300 Some minor cleaning up. commit f949eda8915a54e1fed189f6ff368892e42a6086 Author: Alan Garny '' Date: Tue Dec 10 13:50:49 2019 +1300 Python support: use the same initial settings to test our local/remote CellML file '(#2178).' commit ae5411529b34ae4e0f64a7a027c91be7759be9da Author: Alan Garny '' Date: Tue Dec 10 13:46:51 2019 +1300 Some minor cleaning up. commit 2d493fb8e8e93793e8733ce4197ec0ee09720a64 Author: Alan Garny '' Date: Tue Dec 10 12:53:39 2019 +1300 Test utils: further clean up our test output '(#2178).' commit 921fb66171125f40007d3db32577d7c34def3722 Author: Alan Garny '' Date: Tue Dec 10 12:35:24 2019 +1300 Some minor cleaning up. commit e886f9cb3e5d080c155efd6a7ae2576a29ae9e57 Author: Alan Garny '' Date: Tue Dec 10 12:03:47 2019 +1300 Allow arguments to our runtests.bat script. commit 7bd5a6efe929ce0aec605c016f2dac67a05b32cf Author: Alan Garny '' Date: Tue Dec 10 12:03:28 2019 +1300 Slight improvement to our 'make[tests]' scripts. commit c3f03c28322138334262d950a9efd03f0c2906d7 Author: Alan Garny '' Date: Tue Dec 10 10:56:50 2019 +1300 Test utils: further clean up our test output '(#2178).' commit 7f49449a989ab744aaa968c1f990c021e82ed5c2 Author: Alan Garny '' Date: Tue Dec 10 10:22:20 2019 +1300 Test utils: further clean up our test output '(#2178).' commit a96eb8c27682c7980a86e1bc62e6ad8b374316b5 Author: Alan Garny '' Date: Mon Dec 9 20:19:31 2019 +1300 Some minor cleaning up. commit 17cad5a74cf6b607fc868cc6b122eb052338f821 Author: Alan Garny '' Date: Mon Dec 9 20:14:58 2019 +1300 Simulation support: simplified our 'set_starting_point()' Python wrrapper '(#2178).' commit 9a3a6df8a0e79c7627902d52230363c7f088a4bb Author: Alan Garny '' Date: Mon Dec 9 20:04:35 2019 +1300 Python support: some work on our Python test '(#2178).' commit cc2f02c5a752e1ec36b55096451384b624e24460 Author: Alan Garny '' Date: Mon Dec 9 20:03:46 2019 +1300 Python support: some work on our Python test '(#2178).' commit 96de7e79f63afc9a485e4faa15406be890888ac8 Author: Alan Garny '' Date: Mon Dec 9 19:58:18 2019 +1300 Simulation support: added 'set_[ode|nla]_solver_property()' as Python wrappers '(#2178).' commit 87a83ec9c7e37d3ef6b396f832837056534ba484 Author: Alan Garny '' Date: Mon Dec 9 19:57:32 2019 +1300 Some minor cleaning up. commit 09a4f7cf0516b0afea2ae7fd2fba260a1ccd5e87 Author: Alan Garny '' Date: Mon Dec 9 19:49:54 2019 +1300 Simulation support: renamed our 'add[Ode|Nla]SolverProperty()' method to 'set[Ode|Nla]SolverProperty()' '(#2178).' No idea why it was called 'add[Ode|Nla]SolverProperty()' in the first place, but what we are doing is setting and not adding, so... commit ba56f3cfc1f3685fa49b91fdd9980bb452607195 Author: Alan Garny '' Date: Mon Dec 9 19:45:16 2019 +1300 Simulation support: added a Pythonic method to retrieve the name of an ODE/NLA solver '(#2178).' commit 16fe10138bb403cdfc83988c3e9e093ad7974b31 Author: Alan Garny '' Date: Mon Dec 9 19:24:54 2019 +1300 Some minor cleaning up. commit c5c3b2a4db2d481b0b916caa773a2c160fcce7eb Author: Alan Garny '' Date: Mon Dec 9 19:18:54 2019 +1300 Python support: have our Python test output simulation results '(#2178).' commit b51518394a05ac385ebb3e2409a4f205a15fca98 Author: Alan Garny '' Date: Mon Dec 9 18:11:19 2019 +1300 Python support: some work on our Python test '(#2178).' commit c030b54690e9aa27f19903262348efa96ed9d8c3 Author: Alan Garny '' Date: Mon Dec 9 18:09:56 2019 +1300 Simulation support: added 'starting_point(),' 'ending_point()' and 'point_interval()' as Python wrappers '(#2178).' commit c9b94d15b48357dca0a27cb99765ff41b50b97e0 Author: Alan Garny '' Date: Mon Dec 9 17:28:13 2019 +1300 Some minor cleaning up. commit 37d295c9316b6c01993f012218bcd05bee3d3ad0 Author: Alan Garny '' Date: Mon Dec 9 17:12:43 2019 +1300 Data store interface: renamed 'setLabel()' and 'label()' to 'setName()' and 'name(),' respectively. commit 4ea4845a18bdac3c5b782e299129a98bf0cdfa7b Author: Alan Garny '' Date: Mon Dec 9 16:41:40 2019 +1300 Some minor cleaning up. commit 4d8c55617b7c18f2ae63086a37516e06a70619ef Author: Alan Garny '' Date: Mon Dec 9 16:29:13 2019 +1300 Some minor cleaning up. commit 663727e73b1930106ae016e8dd08c6fa66193b91 Author: Alan Garny '' Date: Mon Dec 9 16:25:37 2019 +1300 Some minor cleaning up. commit e4ca20eb9660fe554cfc2bf3773b21757d73f954 Author: Alan Garny '' Date: Mon Dec 9 16:04:54 2019 +1300 Python support: check for an invalid local and remote file '(#2178).' commit 9148ea7985d691709e4d4b37b15bc10fdf821f76 Author: Alan Garny '' Date: Mon Dec 9 16:04:26 2019 +1300 Python support: check for the validity and issues of a simulation file '(#2178).' commit daa172b13634c29317494226f83f8cba4c9a2f6e Author: Alan Garny '' Date: Mon Dec 9 15:45:01 2019 +1300 Some minor cleaning up. commit f882ec7e833ce740c066b47fb727e5a1913db04f Author: Alan Garny '' Date: Mon Dec 9 15:40:22 2019 +1300 Python support: test for an unknown local and remote file '(#2178).' commit e79887a05d3d49ea156194270e1ed9494d3f088b Merge: d4796faf3 9f90a3b16 Author: Alan Garny '' Date: Mon Dec 9 15:16:04 2019 +1300 Merge branch ''\''master'\''' into issue2178. commit 9f90a3b165cda3ae808c3b63bef8231bfe74ef25 Merge: 70e4b07b5 7d879a283 Author: Alan Garny '' Date: Mon Dec 9 15:15:20 2019 +1300 Various cleaning ups. commit d4796faf31b90c48d8193ca212a7fa167c32cdd9 Author: Alan Garny '' Date: Mon Dec 9 15:14:42 2019 +1300 Some minor cleaning up. commit a7e8382a89876c35b4ddea89636d7dd2b5c477cb Author: Alan Garny '' Date: Mon Dec 9 15:11:24 2019 +1300 Python support: added some Python-based tests '(#2178).' commit 418964e8ac59f6417349347c60a898331dbf7302 Author: Alan Garny '' Date: Mon Dec 9 14:48:01 2019 +1300 Python support: get our Python script to use the right path '(#2178).' commit 105cff2c666eb6b041465a1ba56180e1c9e18b4e Author: Alan Garny '' Date: Mon Dec 9 14:36:24 2019 +1300 Python support: renamed our Python script '(#2178).' commit 2090f9fb7f2ead1b70bb18ab602919f9551acdb2 Author: Alan Garny '' Date: Mon Dec 9 14:35:49 2019 +1300 Python support: moved our Python script '(#2178).' commit 7d879a283fce122a86d1c527d60006dd405f2be5 Author: Alan Garny '' Date: Mon Dec 9 14:09:09 2019 +1300 Some minor cleaning up. commit d6d8037be8794a847c828c3675c6f1b150790e58 Author: Alan Garny '' Date: Mon Dec 9 13:30:11 2019 +1300 Scripts: 'don'\''t' protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents '[Python]/bin/jupyter' '(and' therefore our Jupyter console, lab and notebook 'scripts)' from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit 10f106b217bb22dbaaf1d700b5a3c5a4d48b0504 Author: Alan Garny '' Date: Sat Dec 7 16:26:17 2019 +1300 Simulation Experiment view: make sure that our file tab icon gets properly updated when running a simulation from Python. commit 52c716acb69cb1dd167d844202068efec9d530f9 Author: Alan Garny '' Date: Fri Dec 6 16:05:37 2019 +1300 Some minor cleaning up. commit 908206d331c50d4aebee87d189f6b04c457f63e8 Author: Alan Garny '' Date: Fri Dec 6 15:48:41 2019 +1300 Some minor cleaning up. commit 7f0cbe1c04c0b3adbf87090abad43d34f7203a2f Author: Alan Garny '' Date: Fri Dec 6 15:17:09 2019 +1300 Some minor cleaning up. commit 9fd2dbaa11079122bf5f8e9168bde5cf6ba7af83 Author: Alan Garny '' Date: Fri Dec 6 15:13:42 2019 +1300 Simulation support: fixed a problem with 'SimulationSupportPythonWrapper::run().' Indeed, it may happen, when trying to call 'disconnect()' on pSimulation, that pSimulation has been deleted just before. So, to call 'disconnect()' hangs up IPython and renders our Python Console window unusable. Unfortunately, there is no '(easy?)' way to test whether pSimulation is still valid. So, we 'don'\''t' call 'disconnect()' anymore and, instead, pass Qt::UniqueConnection in our calls to 'connect().' This leaves the connection with waitLoop, but this 'isn'\''t' '(shouldn'\''t' 'be?)' a problem since waitLoop gets out of scope when leaving 'SimulationSupportPythonWrapper::run().' commit aba11c46607d3e524c8ae3cbbb775504c1a7c089 Author: Alan Garny '' Date: Thu Dec 5 18:06:35 2019 +1300 Some minor cleaning up. commit 76d232b174057ac5b8b9953e603870d5c3408f70 Author: Alan Garny '' Date: Thu Dec 5 17:42:46 2019 +1300 Core plugin: make sure that we get told if there is something wrong with 'guiOpenFile()' and 'guiOpenRemoteFile().' commit 6b257b26616806e137969901af7db762744e3eb9 Author: Alan Garny '' Date: Thu Dec 5 16:46:37 2019 +1300 Simulation support: added a 'data_store()' wrapper for our SimulationResults class. commit f1c0a75cf85ce29461f2c2517d74c608722cfd94 Author: Alan Garny '' Date: Thu Dec 5 16:45:59 2019 +1300 Some minor cleaning up. commit a857304a2de5316749f43fc26b4918d883c770d2 Author: Alan Garny '' Date: Thu Dec 5 16:42:18 2019 +1300 Some minor cleaning up. commit 63de2b17c7e6f9935165a55e9dc4ef1a4641fea2 Author: Alan Garny '' Date: Thu Dec 5 16:29:21 2019 +1300 Some minor cleaning up. commit 999b8992995301c5428c821aebdfec7dbecb90f5 Author: Alan Garny '' Date: Thu Dec 5 16:26:29 2019 +1300 Some minor cleaning up. commit 14f9f09cc25c39d5d6ec25fcd96e00adcc8e36cd Author: Alan Garny '' Date: Thu Dec 5 15:58:30 2019 +1300 Some minor cleaning up. commit 118d760b35cd52d8abc2e68a83695a570f6d77f9 Author: Alan Garny '' Date: Thu Dec 5 15:51:31 2019 +1300 Some minor cleaning up. commit 49fb9e0597d53326bf4ffef845346df8d66be5e9 Author: Alan Garny '' Date: Thu Dec 5 15:45:54 2019 +1300 Some minor cleaning up. commit beca477d5b954eee2d10ca5fe1839621ef976c6d Author: Alan Garny '' Date: Thu Dec 5 15:44:40 2019 +1300 Python support: use Pythonic names for our Python wrappers. commit e94ea9ac3fdd4cac86403f71362e6d6984a79862 Author: Alan Garny '' Date: Thu Dec 5 15:44:32 2019 +1300 Some minor cleaning up. commit 3f7806d2722e7972ff8c85762bb06591371d02c3 Author: Alan Garny '' Date: Thu Dec 5 13:41:58 2019 +1300 Some minor cleaning up. commit f1d124f663e53d6940fa03172a2c50970ec4d877 Author: Alan Garny '' Date: Thu Dec 5 13:21:45 2019 +1300 Python support: use Pythonic names for our OpenCOR Python module. commit 06c9b5cdbfa99fcf8788d0e75e4636f354800c61 Author: Alan Garny '' Date: Thu Dec 5 10:19:30 2019 +1300 Python support: provide some user documentation '(#2216).' commit f94529ea713e3e48c64676dab85815c9b55adff3 Author: Alan Garny '' Date: Wed Dec 4 11:32:15 2019 +1300 Qt WebKit: upgraded to v5.212.0-alpha3 '(#2252).' commit 70e4b07b56b9bdc54fb06bb7b1802bcaeea64441 Author: Alan Garny '' Date: Wed Dec 4 09:52:59 2019 +1300 Some minor cleaning up. commit c82e25f7f245c17ab3c1914139450a39c4d422ae Author: Alan Garny '' Date: Tue Dec 3 17:53:56 2019 +1300 Some minor cleaning up. commit 6a8a88ccdb9f6c10549cae7960c96627f689450e Author: Alan Garny '' Date: Tue Dec 3 17:02:02 2019 +1300 Some minor cleaning up. commit 7dc27ae057d776940fa6e924aa38f425e0c5e150 Merge: 04e6628f0 6f3e54972 Author: Alan Garny '' Date: Tue Dec 3 17:01:00 2019 +1300 Jupyter kernel: make sure that '`implementation`' and '`implementation_version`' are properly set '(closes' '#2250).' commit 6f3e54972a81f8409ebaeecb9fc69ab294321158 Author: Alan Garny '' Date: Tue Dec 3 16:27:10 2019 +1300 Slight update to our downloads page '(#2250).' commit 527e8837e489ceedaff111c539b84a2a4e51b42e Author: Alan Garny '' Date: Tue Dec 3 16:24:15 2019 +1300 Jupyter kernel: make sure that '`implementation`' and '`implementation_version`' are properly set '(#2250).' commit 4d5593934b171684635aa96fc4358f480d2f634f Author: Alan Garny '' Date: Tue Dec 3 16:21:00 2019 +1300 Some minor cleaning up. commit 04e6628f0fd208ef3e48df4088cfa2e9e33b2c51 Merge: fd809ff8a 029def067 Author: Alan Garny '' Date: Tue Dec 3 15:40:47 2019 +1300 Various improvements. commit 029def067ce23b076590843d06c089b5dc32c504 Author: Alan Garny '' Date: Tue Dec 3 15:05:39 2019 +1300 Some minor cleaning up. commit fce3a2ae1af10c6a57bd99d501eb006f44376f58 Merge: 91602edf4 fd809ff8a Author: Alan Garny '' Date: Tue Dec 3 15:04:31 2019 +1300 Merge branch ''\''master'\''' into codefactor. commit 91602edf429d910827a03918b6171e9e8a371d4d Author: Alan Garny '' Date: Tue Dec 3 15:03:05 2019 +1300 Tests: make it possible to run specific tests. commit ee37f9fed38611c8b149180df59b53b56719efa3 Author: Alan Garny '' Date: Tue Dec 3 14:44:58 2019 +1300 Tests: no point in passing arguments to our tests. commit 511dc359a26c33b8934d8496c9e48346b71c96b8 Author: Alan Garny '' Date: Tue Dec 3 14:44:11 2019 +1300 Some minor cleaning up. commit fd809ff8ac3b7a1b87b847fd679b8522d79be0e1 Merge: bcacc483f cd3bf6f81 Author: Alan Garny '' Date: Tue Dec 3 14:34:22 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin '(closes' '#2247).' commit 61a48ed1c1dd601bfe3e7e4a207514ab4f6e7e42 Author: Alan Garny '' Date: Tue Dec 3 13:56:09 2019 +1300 Revert '"Let' ESLint know that our jsonData variable is used 'elsewhere."' This reverts commit cf611adb97aadb9e5abb391331a99c093111bdcd. commit cf611adb97aadb9e5abb391331a99c093111bdcd Author: Alan Garny '' Date: Tue Dec 3 13:38:31 2019 +1300 Let ESLint know that our jsonData variable is used elsewhere. See https://eslint.org/docs/rules/no-unused-vars. commit 141b6a377b08b29fd29037cf67fc5a1c1a375802 Author: Alan Garny '' Date: Tue Dec 3 13:30:11 2019 +1300 Redundant blank line at the end of a code block should be deleted. See https://google.github.io/styleguide/cppguide.html#Vertical_Whitespace. commit b622b8e886c2d58c3d94f5aed18c9ed537f5356f Author: Alan Garny '' Date: Tue Dec 3 13:27:31 2019 +1300 Unnecessary escape character. See https://eslint.org/docs/rules/no-useless-escape. commit 0418c9a0010d9d5ce4a22846d730d7f60ac57a98 Author: Alan Garny '' Date: Tue Dec 3 13:26:23 2019 +1300 'Don'\''t' use units for zero length. See https://stylelint.io/user-guide/rules/length-zero-no-unit. commit f446e6d4782deac927fddf74d15a91b793e9560e Author: Alan Garny '' Date: Tue Dec 3 13:19:17 2019 +1300 Slight improvement to our COR page. We should prefer '' to @import '(see' 'http://www.stevesouders.com/blog/2009/04/09/dont-use-import/).' commit cd3bf6f8181d9a712ae877be69054a7aabd5136e Author: Alan Garny '' Date: Tue Dec 3 13:02:36 2019 +1300 Slight update to our what is new page '(#2247).' commit ef0d0bce17f938ee3efb7fed134ead88c5c7fc13 Author: Alan Garny '' Date: Tue Dec 3 13:01:47 2019 +1300 Slight update to our downloads page '(#2247).' commit 090abdcc6884d5a7ccf4c30e465921cb7d51a647 Author: Alan Garny '' Date: Tue Dec 3 13:00:11 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin '(#2247).' commit d97d363d660c72eff066a8507b924cbda2b90082 Author: Alan Garny '' Date: Tue Dec 3 12:11:07 2019 +1300 Some minor cleaning up. commit 0cc36173871cc4dfc1868bffad2b70670c4b96bf Author: Alan Garny '' Date: Tue Dec 3 12:07:06 2019 +1300 Some minor cleaning up. commit bcacc483f7c21f6c4afee026153bae86b6bc5d6a Merge: ad0bae9fc b7ba21527 Author: Alan Garny '' Date: Tue Dec 3 09:59:00 2019 +1300 'Don'\''t' make our JupyterKernel and PythonShell plugins selectable '(closes' '#2245).' commit b7ba21527e391602897a2a9f1c4d0ea5ca6ccd98 Merge: a6ff41fc1 ad0bae9fc Author: Alan Garny '' Date: Tue Dec 3 09:20:17 2019 +1300 Merge branch ''\''master'\''' into issue2245. commit a6ff41fc12d6c731877a0c128975df35b54c7994 Author: Alan Garny '' Date: Tue Dec 3 09:19:38 2019 +1300 Slight update to our what is new page. commit 60495e713dd74bcb7c1e50617dde967a5c5b536e Author: Alan Garny '' Date: Tue Dec 3 09:16:15 2019 +1300 Slight update to our downloads page '(#2245).' commit ad0bae9fc75d560d4e76e6d5f7fb40be092ec64d Author: Alan Garny '' Date: Mon Dec 2 17:47:04 2019 +1300 Some minor cleaning up. commit 341220da65ec282ff2d7869beea9dff3d6f7b38e Author: Alan Garny '' Date: Mon Dec 2 17:34:24 2019 +1300 Some minor cleaning up. commit 07bb1ccc687aa25a058d923f2bd434417fa962bb Author: Alan Garny '' Date: Mon Dec 2 17:33:27 2019 +1300 Some minor cleaning up. commit a3e3622ea77f1fec8be1b9fff25cc835dc7fad22 Author: Alan Garny '' Date: Mon Dec 2 17:18:06 2019 +1300 'Don'\''t' make our JupyterKernel and PythonShell plugins selectable '(#2245).' commit 74a77cb40b1222d7d9d8b4ea30bd1bcf1c2a8c7d Author: Alan Garny '' Date: Mon Dec 2 17:05:02 2019 +1300 Some minor cleaning up. commit 798c239e240c48e15605a702f45167759c4639b9 Author: Alan Garny '' Date: Mon Dec 2 16:11:55 2019 +1300 Some minor cleaning up. commit a7cba0dfa44c46edfff22221440add61f5cbc980 Author: Alan Garny '' Date: Mon Dec 2 16:11:14 2019 +1300 Some minor cleaning up. commit fabb238958182722eba44f3d8bed756f9fa67102 Merge: 01269be75 2fcb71697 Author: Alan Garny '' Date: Mon Dec 2 16:07:32 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(closes' '#2164).' commit 2fcb7169715f02724ef175d7282ae9e3b24ffc71 Author: Alan Garny '' Date: Mon Dec 2 14:46:52 2019 +1300 Some minor cleaning up. commit 0f00f1afdd313a4d2c36ca7a0da9a3ccf1d646ab Author: Alan Garny '' Date: Mon Dec 2 14:23:38 2019 +1300 Python: slight update to our README.rst file. commit bc2cd1e227de3a40cca1dbe2507b56cab7c2fa85 Author: Alan Garny '' Date: Mon Dec 2 14:23:27 2019 +1300 Some minor cleaning up. commit 07069ae0427fe37ced823723a6f124cc20c8807b Author: Alan Garny '' Date: Mon Dec 2 14:23:05 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit 6213dc216019dbabebfb4825941d47b5017d5ca5 Author: Alan Garny '' Date: Mon Dec 2 14:04:55 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit 162b66569840e86aa794fbbb4014c2514337e7dd Author: Alan Garny '' Date: Mon Dec 2 13:55:31 2019 +1300 Some minor cleaning up. commit 6fb5cc17fdfeb735ce5f63b3697ecdec969b305a Author: Alan Garny '' Date: Mon Dec 2 13:51:48 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit b08e07f1b8a619b9278ecefba076fb7a5af0be3f Author: Alan Garny '' Date: Mon Dec 2 13:30:35 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit 826dc77d8e39e61d99c31aa4f34d7db40969014e Author: Alan Garny '' Date: Mon Dec 2 13:30:09 2019 +1300 Some minor cleaning up. commit e503ced83fa6bb3309bfe7030e6a7e32b4957239 Author: Alan Garny '' Date: Mon Dec 2 13:28:17 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit 0fec2b1f4244991e512a67e0b31e73e70b036d13 Author: Alan Garny '' Date: Mon Dec 2 13:22:41 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit 1b2b7d9dd5c86aa9a810435ee322a17258582f38 Author: Alan Garny '' Date: Mon Dec 2 13:08:55 2019 +1300 License: removed double spaces. commit f6b7f2f54259611932df18842b54b4b43b564cd4 Author: Alan Garny '' Date: Mon Dec 2 12:57:31 2019 +1300 Removed '`www.`' wherever possible. commit a8ef7e1e1427cdda29e2f8009fd41b4ab936e426 Merge: 7b25a4144 01269be75 Author: Alan Garny '' Date: Mon Dec 2 12:43:42 2019 +1300 Merge branch ''\''master'\''' into issue2164. commit 01269be751fec9e96d7ecc9d696df142d720fe0a Merge: 47e9fb2bc cfc38db33 Author: Alan Garny '' Date: Mon Dec 2 12:11:51 2019 +1300 Added LZMA extension to Python. commit 7b25a414465ed8f796b4fe42308fb4ec0a851f31 Author: Alan Garny '' Date: Mon Dec 2 12:08:25 2019 +1300 Replaced '`http`' with '`https`' wherever possible '(#2164).' commit cfc38db33f9d3aada078bb75c6ff8093322efaa4 Author: Alan Garny '' Date: Mon Dec 2 11:09:02 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit d2759ad34f8c1199febcbfcf195a06133a440b20 Author: Alan Garny '' Date: Mon Dec 2 11:00:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 5ade7acf51bbb70baa25ee38614bc2e0fc63516c Author: Alan Garny '' Date: Mon Dec 2 10:57:48 2019 +1300 Python package: slight cleaning up of our README.rst file. commit f69c0c7f71fd42b85d59eaa96bd9ae16ed852ac4 Merge: 3f3769f38 47e9fb2bc Author: Alan Garny '' Date: Mon Dec 2 10:51:10 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into python-lzma. commit 3f3769f388bd04ab217ef42d13c6310a3f219b39 Author: Alan Garny '' Date: Mon Dec 2 10:49:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 9a9c5d38c02439f42759b27692dcbbc56865e8f0 Author: Alan Garny '' Date: Mon Dec 2 10:39:07 2019 +1300 Python package: slight updates to our README.rst file. Just reformatted things and removed the Windows '"dependencies"' since they are actually taken care of in our CMakeLists.txt file. commit 47e9fb2bccb66dbd3313770db3e63a126e6170cc Merge: 1251c8660 edc9d8de1 Author: Alan Garny '' Date: Fri Nov 29 23:28:59 2019 +1300 CellML support: fixed an issue with the CellML API wrongly allowing code generation for non-runnable models '(closes' '#2240).' commit edc9d8de1faa95bef83156c50ed4ee5c2a6cf0f5 Author: Alan Garny '' Date: Fri Nov 29 19:58:39 2019 +1300 Slight update to our downloads page '(#2240).' commit d1faca68c6311565a2e8e53f2e7e4ac3831f9739 Author: Alan Garny '' Date: Fri Nov 29 19:53:38 2019 +1300 CellML API : new binaries for version 1.12 '(#2240).' commit e4f50865a81b1128322d0f6076eed4a62c64339b Author: Alan Garny '' Date: Fri Nov 29 19:53:07 2019 +1300 CellML API: prevent some warnings '(and' therefore an 'error)' on Linux. commit ff7a761d53b667af53c1fbcfe3e6a52d8d7b58ee Author: Alan Garny '' Date: Fri Nov 29 19:25:35 2019 +1300 CellML API: prevent a warning '(and' therefore an 'error)' on Windows. commit 442a1fc873881256f5f33467e3408f7c218c79d6 Author: Alan Garny '' Date: Fri Nov 29 14:23:30 2019 +1300 Improved our 'formatMessage()' method. The second character must be lower case or space type. Also, we 'don'\''t' change the casing if the message starts with '"CellML".' Indeed, should a message start with '"CellML",' we 'wouldn'\''t' want it now to start with '"cellML"...!' commit 6af2bb317828fd64a2cdfaa7935a0af8fb18b75f Author: Alan Garny '' Date: Fri Nov 29 14:21:03 2019 +1300 Some minor cleaning up. commit d2bd5117cd4bf1ec3bb0985f638482569ab12bac Merge: dabd6c38b 1251c8660 Author: David Brooks '' Date: Thu Nov 28 23:20:22 2019 +1300 Merge branch ''\''master'\''' into python-lzma commit dabd6c38bb798d69207ecc17abaa56f2e23216f0 Author: David Brooks '' Date: Thu Nov 28 23:17:43 2019 +1300 Python: note build dependencies. commit b553e91f08e0df575b847bf4506ff0677a799b10 Author: David Brooks '' Date: Thu Nov 28 23:01:45 2019 +1300 Python: use installed BZip2 library under Linux instead of building it ourselves. commit 01b0f1845a63628800f1972d9179d55819fdf959 Author: David Brooks '' Date: Thu Nov 28 22:58:51 2019 +1300 Python: tidy up building SQLite3 extension. commit 97b5e02700183abaad0dd0032ce995350fb666a0 Author: David Brooks '' Date: Thu Nov 28 22:55:01 2019 +1300 Python: include the '`lzma`' extension when building Python. commit 1251c86600cd7785d459b8436a2d1b2790b0e321 Merge: 6999d18c6 63da22bee Author: Alan Garny '' Date: Thu Nov 28 18:27:12 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 63da22bee3ddc0def96686f4144491346804bc61 Author: Alan Garny '' Date: Thu Nov 28 16:41:09 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 6999d18c61da43122deb7701d65e67b5b0792b94 Author: Alan Garny '' Date: Thu Nov 28 14:40:42 2019 +1300 Some minor cleaning up. commit 77e6d571f6c6e707c78fbc49934e4d8bc28180a9 Merge: b1e7f85da 0101a5457 Author: Alan Garny '' Date: Thu Nov 28 14:38:51 2019 +1300 Simulation Experiment view: 'don'\''t' access our central widget directly anymore '(closes' '#2218).' commit 0101a54575d6441f80632f9435b2d772b51be216 Author: Alan Garny '' Date: Thu Nov 28 13:23:39 2019 +1300 Simulation Experiment view: 'don'\''t' access our central widget directly '(#2218).' commit 7725addb198d5292e2d031dc26b377d44faba22c Author: Alan Garny '' Date: Thu Nov 28 13:23:34 2019 +1300 Some minor cleaning up. commit 276292a42521d3838ddecdbfb31d01310f94e04a Author: Alan Garny '' Date: Thu Nov 28 12:49:40 2019 +1300 Slight update to our downloads page '(#2218).' commit 2ba34dea9d7519042fed35f9e8b3d40318e51d8c Author: Alan Garny '' Date: Thu Nov 28 12:47:44 2019 +1300 Some minor cleaning up. commit 4dededb601e34bb29bb4a0604c9fb633f18442e2 Author: Alan Garny '' Date: Thu Nov 28 12:40:07 2019 +1300 Simulation Experiment view: 'don'\''t' access our central widget directly '(#2218).' commit 214be55171b7e5088fe9e577a36ea5badad3d9f4 Author: Alan Garny '' Date: Thu Nov 28 11:51:03 2019 +1300 Simulation Experiment view: 'don'\''t' access our central widget directly '(#2218).' commit 4f8f88fa21687f9ba04128084e6af659a5a6a8e4 Author: Alan Garny '' Date: Thu Nov 28 11:49:23 2019 +1300 Some minor cleaning up. commit b1e7f85daefbe1869c81a07a8f721e64a593c401 Author: Alan Garny '' Date: Thu Nov 28 10:44:08 2019 +1300 Some minor cleaning up. commit a5087ee3051e1d50c6703bf023677b676385b7ac Merge: 734637cd0 266db8d9c Author: Alan Garny '' Date: Thu Nov 28 10:40:58 2019 +1300 Simulation support: 'don'\''t' require all our solvers to be installed anymore '(closes' '#2234).' commit 266db8d9ce20f8c96f921cfa1dd236d7c1307ea1 Author: Alan Garny '' Date: Thu Nov 28 09:43:22 2019 +1300 Slight update to our downloads page '(#2234).' commit 7582459fbba18152c93a00d7cfa5cae508cbe015 Author: Alan Garny '' Date: Thu Nov 28 09:22:26 2019 +1300 Plugin manager: all our solvers should be loaded when in CLI mode '(#2234).' This ensures that we can do whatever we want from Python when in '"CLI' 'mode".' If we are in GUI mode, we want to allow the user to be able to select whatever solver s/he wants to have. When it comes to Python support, if a solver is not loaded but needed by a Python script, then we will get an error '(see' commit 'd51e9669d).' commit d51e9669d6146086c1059d9d4c6c828764de3406 Author: Alan Garny '' Date: Wed Nov 27 19:37:18 2019 +1300 Simualtion Experiment view: improved our our simulation Python wrapper '(#2234).' This needed since different types of issues may occur, e.g. a solver is not present. This also means that our Python console now generates the same error as our Simulation Experiment view. commit e01a134878bdb3d182faa115a24f640e1e99999c Author: Alan Garny '' Date: Wed Nov 27 19:30:39 2019 +1300 Some minor cleaning up. commit 7a893ba7c3e2234640b963148ab894828a7042fe Author: Alan Garny '' Date: Wed Nov 27 19:22:57 2019 +1300 Some minor cleaning up. commit dd3c836461e6500e5561d462db7c37d4cd21c333 Author: Alan Garny '' Date: Wed Nov 27 18:11:42 2019 +1300 Some minor cleaning up. commit 18a77b66e416d1f204a83665bdcbe091745f402a Author: Alan Garny '' Date: Wed Nov 27 17:38:02 2019 +1300 Simulation Experiment view: make sure that we always update ourselves when our enabled state changes. commit 24abad8c6bae61a5d97f917ec5060795cddd2407 Author: Alan Garny '' Date: Wed Nov 27 17:23:51 2019 +1300 Simulation Experiment view: reverted commit af84fb6 and properly fixed the issue we had. Indeed, it definitely 'didn'\''t' fix our problem while we do '(should!)' now. commit 5c967de7deaaeb71079a82dadb59865ddb51ea1a Author: Alan Garny '' Date: Wed Nov 27 17:22:52 2019 +1300 Some minor cleaning up. commit e38b6effa76f8886e23f3a0e108c5a9b3adbbf23 Author: Alan Garny '' Date: Wed Nov 27 15:56:48 2019 +1300 Simulation support: 'don'\''t' require all our solvers to be installed '(#2234).' commit 734637cd03358da2381a7c441e4367110b039661 Merge: bbd473b5b 373d1d4c1 Author: Alan Garny '' Date: Wed Nov 27 15:44:35 2019 +1300 Python support: merged duplicated code '(closes' '#2225).' commit 373d1d4c15c36c184138efcb556825e3bdbc01a9 Author: Alan Garny '' Date: Wed Nov 27 14:18:42 2019 +1300 Slight update to our downloads page '(#2225).' commit 4d22669524d067ed4add897b6f5eaa7e033099b1 Author: Alan Garny '' Date: Wed Nov 27 14:17:15 2019 +1300 Some minor cleaning up. commit 28002af3bae8f5437ee658bcf2885aa7b98c0ccc Author: Alan Garny '' Date: Wed Nov 27 14:09:57 2019 +1300 Python support: merge duplicated code '(#2225).' commit 9d03e24159cd39895540565c745801d32b2a7180 Author: Alan Garny '' Date: Wed Nov 27 13:08:17 2019 +1300 Some minor cleaning up. commit 1d7f062a39ec969dff47e33c1332e58abc15a7e9 Author: Alan Garny '' Date: Wed Nov 27 13:02:38 2019 +1300 Python support: merge duplicated code '(#2225).' commit ccc0719fb859fca831c62eddd7f58bb6a9a4668b Author: Alan Garny '' Date: Wed Nov 27 12:12:10 2019 +1300 Python support: merge duplicated code '(#2225).' commit 21cf3e262c458aab86bf815528dc2d8923ef45d7 Author: Alan Garny '' Date: Wed Nov 27 10:31:02 2019 +1300 Python support: merge duplicated code '(#2225).' commit 0c1ec6de9a7eded9067070f84d64135f0a847a3c Author: Alan Garny '' Date: Wed Nov 27 09:50:16 2019 +1300 Python support: merge duplicated code '(#2225).' commit 303cc0b561a024eee8399f6d699fb075f3a32413 Author: Alan Garny '' Date: Wed Nov 27 09:42:03 2019 +1300 Python support: merge duplicated code '(#2225).' commit f2accb69b303da0e641912970d2fd5218bd005d5 Merge: d8cad0458 bbd473b5b Author: Alan Garny '' Date: Tue Nov 26 18:10:16 2019 +1300 Merge branch ''\''master'\''' into issue2225. commit bbd473b5b2d0bfdda337c29647acad85f588b82c Merge: 5a33bd367 1d194e025 Author: Alan Garny '' Date: Tue Nov 26 18:09:08 2019 +1300 Cleaning up. commit d8cad0458c9746dab86a680cd6f375b8e5ccde34 Author: Alan Garny '' Date: Tue Nov 26 17:52:05 2019 +1300 Moved '(and' renamed some 'of)' our inline files to '[OpenCOR]/src/misc.' Indeed, some inline files that we will want to have '(e.g.' for 'opensimulation)' are going to be needed by different plugins, so... commit b1f35b60d5e58cb6e18672c8f5a582d63c4bc556 Author: Alan Garny '' Date: Tue Nov 26 17:41:14 2019 +1300 Packaging: make sure that we can create our NSIS-based installer on Windows. CMAKE_INSTALL_DEFAULT_COMPONENT_NAME is needed on macOS for productbuild to work fine, but 'it'\''s' somehow causing us problems with NSIS on Windows, so... commit 2302cd2246833af9f18d2377fb7143fa6430df94 Author: Alan Garny '' Date: Tue Nov 26 17:07:43 2019 +1300 Moved our ICU and Mesa libraries to a better place. commit 38b9c7b412145a0155647b41c6bd319abaaba5ca Author: Alan Garny '' Date: Tue Nov 26 16:40:34 2019 +1300 Python support: prevent duplicated code '(#2225).' commit d37e7b4390ab5b3a65d8e58ce5286f1a5e460977 Author: Alan Garny '' Date: Tue Nov 26 16:21:36 2019 +1300 Python support: prevent duplicated code '(#2225).' commit 1d194e025643ea99daba1fc6c46d759aa603a73a Merge: 96c1dd918 5a33bd367 Author: Alan Garny '' Date: Tue Nov 26 16:15:50 2019 +1300 Merge branch ''\''master'\''' into cleaning-up. commit 5a33bd3673ad29737f13c25ee44f6bb76a5b1556 Merge: cdbf2d18a 4ae5bb107 Author: Alan Garny '' Date: Tue Nov 26 16:14:57 2019 +1300 Some minor cleaning up. commit 96c1dd918f4a1cdda35257a6f4d305dd13447320 Author: Alan Garny '' Date: Tue Nov 26 16:14:16 2019 +1300 Make sure that our preferred C and C++ compilers are used to build external projects. We now guarantee this for CMake-based projects, but not sure about QMake-based 'ones...!?' commit e1dd907ce270975719da8ca66e0bf54df8293441 Author: Alan Garny '' Date: Tue Nov 26 15:45:40 2019 +1300 Python support: prevent duplicated code '(#2225).' commit 4ae5bb1079291044b99e70b35e87c118c54ccb0b Merge: d67a3bcd3 cdbf2d18a Author: Alan Garny '' Date: Tue Nov 26 14:51:27 2019 +1300 Merge branch ''\''master'\''' into issue2224 commit d67a3bcd31a8c8cd6e74d27dbf165d1aac541d8f Author: Alan Garny '' Date: Tue Nov 26 14:41:54 2019 +1300 Jupyter kernel: remoevd our README.rst file '(#2224).' It contained some information about debugging a Jupyter notebook, but things have changed a bit and I 'wasn'\''t' able to get a Jupyter connection file using the instructions '(couldn'\''t' find the debug 'output?!).' Either way, we should be able to come up with up-to-date debugging information when actually needed. commit cdbf2d18aef06631e011903ac2a6afb6f69727af Merge: aef10983a c167e3663 Author: Alan Garny '' Date: Tue Nov 26 14:32:56 2019 +1300 Python: build and link to our libbz2 under Windows and Linux. commit bf4f5506f83ecc474b8be8cc0d01d4c126c268c8 Author: Alan Garny '' Date: Tue Nov 26 14:10:03 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file '(#2224).' commit fcbcf48f77c105ad856bca41f40d381353395f35 Author: Alan Garny '' Date: Tue Nov 26 14:06:39 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file '(#2224).' commit b3010e4b9f183802db5c9ac332bcce69421edb3f Author: Alan Garny '' Date: Tue Nov 26 14:00:25 2019 +1300 Jupyter kernel: renamed our NOTES.rst file to README.rst '(#2224).' commit c167e36635c5b5fbf1ff745b6fd8c565af019929 Author: Alan Garny '' Date: Tue Nov 26 13:58:13 2019 +1300 Python: new Windows binaries. commit 8df7378889d2d3ae0002c2219f29d545ea4cbbec Author: Alan Garny '' Date: Tue Nov 26 13:53:47 2019 +1300 Python package: we definitely need to make sure that our 'package'\''s' binaries directory exists. commit 333c5a063514da8c36ae859d874dc45e41b4055f Author: Alan Garny '' Date: Tue Nov 26 13:04:22 2019 +1300 Some minor cleaning up. commit 8f561b7c788b5002b5a1d8d6573593727ed77839 Merge: b592228e2 b75be1f52 Author: Alan Garny '' Date: Tue Nov 26 12:52:09 2019 +1300 Merge branch ''\''python_bzip2'\''' of https://github.com/dbrnz/opencor into python_bzip2. commit b592228e236525ebfb576d13ee23aee20eda0c38 Author: Alan Garny '' Date: Tue Nov 26 12:51:08 2019 +1300 Python package: some minor cleaning up. commit b75be1f52cbcd29d4d401f0ec2fffcac35b5914b Author: David Brooks '' Date: Tue Nov 26 12:38:19 2019 +1300 Python: 'there'\''s' no need to create the external binaries directory. commit b48387f0806877ce52143d5590ebb902775cbc4c Author: Alan Garny '' Date: Tue Nov 26 12:28:49 2019 +1300 Python: new Linux binary. commit c7a5ada82b6f37dbfdbdd3d09b9fd151196def63 Merge: a06e35646 aef10983a Author: David Brooks '' Date: Tue Nov 26 10:44:59 2019 +1300 Merge branch ''\''master'\''' into python_bzip2 commit a06e35646467edeeac20aa6c08298c51c06d5c32 Author: David Brooks '' Date: Tue Nov 26 09:48:22 2019 +1300 Python: use correct name for bzip2 library built under Windows. commit b1ac6ca48d6b05500bd0f892b3515ffdeb6f55ea Author: David Brooks '' Date: Tue Nov 26 09:47:41 2019 +1300 Python: use our bzip2 repository. commit aef10983aaaa82b926d1adc847036e8a55efa2fb Merge: a67d0aa58 1515d523b Author: Alan Garny '' Date: Tue Nov 26 08:53:00 2019 +1300 Mesa: upgraded to version 19.2.6 '(closes' '#2230).' commit 1515d523b0daa715ae2139ca81d12c0323956e64 Author: Alan Garny '' Date: Mon Nov 25 18:14:14 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 35ffce1a29c05b02a68ee698342197938cd70ce0 Author: Alan Garny '' Date: Mon Nov 25 18:07:32 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit a15bcb4d03eca4be2c8cdd899bd798364d53dedc Author: Alan Garny '' Date: Mon Nov 25 17:51:24 2019 +1300 Mesa: binary for version 19.2.6 '(#2230).' commit eea0ecf5d6d5fc95e6b6a9a30b675d366ba3225f Merge: 7913c7846 a67d0aa58 Author: Alan Garny '' Date: Mon Nov 25 17:44:10 2019 +1300 Merge branch ''\''master'\''' into issue2230. commit 7913c784620bebbb30c0307cc30d0e7d035de830 Author: Alan Garny '' Date: Mon Nov 25 17:42:13 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 358349c9204fc2e27d42822189aec6d248774073 Author: Alan Garny '' Date: Mon Nov 25 17:41:38 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit e1f59cfb75414e967993f0d48f8302648bbe1a1b Author: Alan Garny '' Date: Mon Nov 25 17:39:08 2019 +1300 Some minor cleaning up. commit a67d0aa589083d5a4620156f1f208c584ea02292 Merge: deb571a0b d09b69e66 Author: Alan Garny '' Date: Mon Nov 25 17:34:19 2019 +1300 macOS packaging: replaced our use of PackageMaker with that of productbuild '(closes' '#2210).' commit 847cb9b5a5fb17dcbcacef29c0297edc996c82e0 Author: Alan Garny '' Date: Mon Nov 25 17:25:23 2019 +1300 CMake: only install our Python-related scripts if we built OpenCOR with Python support. commit ad331eeff41a663a251398edfe7cb99802abfb0a Author: Alan Garny '' Date: Mon Nov 25 17:21:49 2019 +1300 Slight update to our downloads page '(#2230).' commit 5fdff63c2eeead9f55cf2f24e2f132f4b668b95f Author: Alan Garny '' Date: Mon Nov 25 17:20:04 2019 +1300 Mesa: binary for version 19.2.6 '(#2230).' commit 85774812cf68cd23c7a7ef23a659e36cbaf796b7 Author: Alan Garny '' Date: Mon Nov 25 17:06:24 2019 +1300 Mesa: upgraded to version 19.2.6 '(#2230).' commit d09b69e664fa3d7092d35359bf4fc43ca1fd83a7 Author: Alan Garny '' Date: Mon Nov 25 16:19:44 2019 +1300 Slight update to our downloads page '(#2210).' commit 3a2f3cce5dfad50eed62e1f6a7d36ddcb002c46e Merge: a24ec55f7 deb571a0b Author: Alan Garny '' Date: Mon Nov 25 15:50:45 2019 +1300 Merge branch ''\''master'\''' into issue2210. commit deb571a0ba8857301cfea0613c650d1ab62597bb Merge: 7c5f4884c 37d250636 Author: Alan Garny '' Date: Mon Nov 25 15:50:06 2019 +1300 Some minor cleaning up. commit a24ec55f79a4c8cf0d68852af980b7bab3fae0f6 Author: Alan Garny '' Date: Mon Nov 25 15:48:03 2019 +1300 macOS packaging: replace our use of PackageMaker with that of productbuild '(#2210).' commit 37d250636d04c91ea26c935fe5a7c08609131e3d Merge: 4a66e86af 7c5f4884c Author: Alan Garny '' Date: Mon Nov 25 15:16:15 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''.' commit 7c5f4884c0cfa36b8f8672e1db8539b15f902281 Merge: be13ada23 bf231de79 Author: Alan Garny '' Date: Mon Nov 25 15:15:24 2019 +1300 Apply fixes from CodeFactor commit 4a66e86af6ef695781e38f35f632ab63ddecd051 Author: Alan Garny '' Date: Mon Nov 25 14:39:47 2019 +1300 Some minor cleaning up. commit d1692ff9c28f9ada697aa85459edb504dae32ca1 Author: Alan Garny '' Date: Mon Nov 25 14:35:02 2019 +1300 Some minor cleaning up. commit 75f6a96caaefe18189001313b61e5f074e26bb97 Author: Alan Garny '' Date: Mon Nov 25 14:23:44 2019 +1300 Some minor cleaning up. commit 90c29024bd7e943fb3e133fa9765b1ef158d22cf Author: Alan Garny '' Date: Mon Nov 25 14:22:54 2019 +1300 Some minor cleaning up. commit ee1ae8da7d9b122c8f555ed783759e2338200046 Author: Alan Garny '' Date: Mon Nov 25 14:20:09 2019 +1300 Some minor cleaning up. commit af54d4b2411fe6da4337135e2c8a59bcc46eccde Merge: 480a54497 217e8c4b4 Author: Alan Garny '' Date: Mon Nov 25 14:17:58 2019 +1300 Apply fixes from CodeFactor. commit 217e8c4b47dd9b00c36866330725726ddec58742 Author: codefactor-io '' Date: Mon Nov 25 01:17:33 2019 +0000 '[CodeFactor]' Apply fixes commit 480a54497d9651b0fbdbc3df8bdb7293bace84fd Merge: be13ada23 d8391f5e8 Author: Alan Garny '' Date: Mon Nov 25 14:16:43 2019 +1300 Apply fixes from CodeFactor. commit d8391f5e89b2e77acf94be3b1ab414b8a42b969a Author: codefactor-io '' Date: Mon Nov 25 01:15:47 2019 +0000 '[CodeFactor]' Apply fixes commit bf231de7934c86de6b9622dbc70ac6a56f788c73 Author: codefactor-io '' Date: Mon Nov 25 01:12:47 2019 +0000 '[CodeFactor]' Apply fixes commit d8aa1a539b43215c0d5ce1ff5b18fa68b9242faa Author: Alan Garny '' Date: Mon Nov 25 13:11:36 2019 +1300 macOS packaging: slight improvement to the way we package OpenCOR on macOS. This is basically the proper way to handle packaging using CPack rather than customising things in our package script. commit c66ecc5b6e21ab812bf670d88b8668d8846923e9 Author: Alan Garny '' Date: Mon Nov 25 11:40:34 2019 +1300 macOS: added support for SED-ML files and COMBINE archives in our Info.plist file. commit 93244c571cb8ef406d64c62dac4ba039e47b5a15 Author: Alan Garny '' Date: Mon Nov 25 10:37:03 2019 +1300 macOS: specify, in our Info.plist file, the minimum version of macOS that we support. commit 336983c85f57250821762ab85790dff2d02d1197 Author: Alan Garny '' Date: Mon Nov 25 10:36:18 2019 +1300 macOS: make sure that we support high resolution in our Info.plist file. It looks like it was working fine until now, but it 'can'\''t' harm having this key set. commit bf40e3c5cab262c76db09c5693d8087a59a8ef87 Author: Alan Garny '' Date: Mon Nov 25 10:31:45 2019 +1300 macOS: slight update to our Info.plist file. commit 99339ec2f737ffd66192e5e7c73dea304229431d Author: Alan Garny '' Date: Mon Nov 25 10:21:45 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit 4c0c949c90ccfae69bc603a2c6c4b6bfeb3cddfe Author: Alan Garny '' Date: Mon Nov 25 10:05:52 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit cd1365a3c4cd2133a18012b49de32bc709911a5f Author: Alan Garny '' Date: Mon Nov 25 09:49:46 2019 +1300 macOS: alphabetically order the keys in our Info.plist file. commit 34d3d361d79ba45fd7a18726b5d6d67d0d253801 Author: David Brooks '' Date: Sun Nov 24 09:24:51 2019 +1300 Python: use the same compiler for building Python as used for building OpenCOR. commit 1e691e6d953849818ad4733a18463f85569a2363 Author: David Brooks '' Date: Fri Nov 22 16:48:06 2019 +1300 Python: tidy up building of bzip2. commit e53db9f54c6f5ea09628ec288abef8e83c202d68 Author: David Brooks '' Date: Fri Nov 22 16:29:54 2019 +1300 Merge branch ''\''master'\''' into python_bzip2 commit 818edc3f97c03e903694274ade20df13729eb357 Author: David Brooks '' Date: Fri Nov 22 16:08:03 2019 +1300 Python: built bzip2 library includes version on Linux. commit be13ada23b22b5e5984e4ada7a9b892e15580234 Merge: bf13bef1d f95de828f Author: Alan Garny '' Date: Fri Nov 22 16:00:00 2019 +1300 CMake: specify the compiler we want to use. commit 3a362e1beb2b1da850ec7fbe0ec9916fa5c490a3 Author: David Brooks '' Date: Fri Nov 22 15:56:20 2019 +1300 Python: we need a shared bzip2 library for Linux. commit 9d22d514d57f72554269e94828b235acbd337306 Author: David Brooks '' Date: Fri Nov 22 15:30:27 2019 +1300 Python: build bzip2 library under Windows and Linux. commit f95de828f12af07fe8e655d3590a0f077c834eb0 Author: Alan Garny '' Date: Fri Nov 22 15:26:20 2019 +1300 CMake: specify the compiler we want to use. commit 8654f205f7190d65c8846e0bb8687bd29a9c4285 Author: Alan Garny '' Date: Fri Nov 22 14:22:04 2019 +1300 CMake: specify the compiler we want to use. commit cf4fde03949ba88e9899f73bf46e4e8bccf2e7ab Merge: e762a5c51 bf13bef1d Author: Alan Garny '' Date: Fri Nov 22 14:18:32 2019 +1300 Merge branch ''\''master'\''' into set_compiler commit bf13bef1dce409ffa66ac6cd00e0588f0034e6d5 Merge: 8d3fe9f5b 3fea2f2a4 Author: Alan Garny '' Date: Fri Nov 22 14:17:41 2019 +1300 Python: Upgraded Jupyter notebook to 6.0.2. commit e762a5c51c3b9f7cb9169242e5b7b57453845176 Author: David Brooks '' Date: Fri Nov 22 12:34:29 2019 +1300 CMake: specify the compiler we want to use. commit 3fea2f2a4cda0a3efd4e5ee386e72e0194472c11 Author: David Brooks '' Date: Fri Nov 22 12:23:02 2019 +1300 Python: Upgrade Jupyter notebook to 6.0.2. See https://github.com/jupyter/notebook/blob/master/docs/source/changelog.rst for details. commit 8d3fe9f5b9510a1643f750c581e8159918b2d6b2 Merge: 4048a366b 6a34f01f0 Author: Alan Garny '' Date: Fri Nov 22 11:13:00 2019 +1300 Python support: update the PATH using '`\`' rather than '`/`' on Windows '(closes' '#2219).' commit 6a34f01f007ad6a219211f6ea48c43458588411e Author: Alan Garny '' Date: Fri Nov 22 10:18:04 2019 +1300 Python support: update the PATH using '`\`' rather than '`/`' on Windows '(#2219).' commit 5fc09367422414f52e655e280452d00702c7f3ea Author: Alan Garny '' Date: Fri Nov 22 10:06:34 2019 +1300 Slight update to our downloads page '(#2219).' commit e6c3c645ef79b8c5fc9e4370e018ae4d9a663c5c Author: Alan Garny '' Date: Fri Nov 22 10:03:41 2019 +1300 Python support: update the PATH using '`\`' rather than '`/`' on Windows '(#2219).' commit 4048a366b3ed5b10109b80cc87cf04414dd4a3f8 Author: Alan Garny '' Date: Thu Nov 21 16:30:36 2019 +1300 Python: updated our test Python script. So that our remote files now point to our master branch. commit 6729b7432e263680f31904a022def936efa21b61 Merge: 76fbc4c37 257054155 Author: Alan Garny '' Date: Thu Nov 21 14:21:40 2019 +1300 General: added support for Python '(closes' '#1255).' commit 25705415599102f40df8362342d80ce705cb6dfb Author: Alan Garny '' Date: Thu Nov 21 13:25:44 2019 +1300 Slight updates to our downloads and what is new pages '(#1255).' commit a0ee6fbe58eb8a7f39df8ff7a79d7a87cb1d6f87 Author: Alan Garny '' Date: Thu Nov 21 12:35:24 2019 +1300 Some minor cleaning up. commit 79e61f8de0f9afbef8104316ad5a49cf7ff906e3 Author: Alan Garny '' Date: Thu Nov 21 12:19:06 2019 +1300 PythonPackages and PythonQt packages: updated our binaries. commit d2f3b5ba909ea5309ad50a2aecfa97fb25669c19 Author: Alan Garny '' Date: Thu Nov 21 11:49:29 2019 +1300 Python package: updated our binaries. commit 130064adc7f8e1402a3e043d1015d4b911ec694e Author: Alan Garny '' Date: Thu Nov 21 11:31:56 2019 +1300 Some minor cleaning up. commit f2d16f01a646f56f1b4d6c057c3438baf2ee7195 Author: Alan Garny '' Date: Thu Nov 21 10:54:15 2019 +1300 Some minor cleaning up. commit 561b9841725ffdf14efb67c477027d44fd2816e0 Author: Alan Garny '' Date: Thu Nov 21 10:24:25 2019 +1300 Some minor cleaning up. commit 5e363992a192fdc9474c4ed27d2ca059e79c9959 Author: Alan Garny '' Date: Thu Nov 21 10:05:49 2019 +1300 Some minor cleaning up. commit ef3ccfbe58b37ea2750de4ca8cde567a425791d5 Author: Alan Garny '' Date: Thu Nov 21 09:47:39 2019 +1300 Some minor cleaning up. commit a5c5d38e7dc7cff0b777e4d6205c4ad9c83d543a Author: Alan Garny '' Date: Wed Nov 20 18:49:16 2019 +1300 Python interface: it 'shouldn'\''t' rely on a plugin being 'installed!' commit a0c591925e09d824806b07d40daffe8e1600a28c Author: Alan Garny '' Date: Wed Nov 20 18:48:55 2019 +1300 Some minor cleaning up. commit b3c63862b5bc49bd16ec27bee4b8efcfe1b0663e Author: Alan Garny '' Date: Wed Nov 20 18:18:31 2019 +1300 Python: removed unneeded patch files for Matplotlib. commit 9dad9568ea8aa87f5e73c18eabb45e97e49e842f Author: Alan Garny '' Date: Wed Nov 20 17:54:03 2019 +1300 Some minor cleaning up. commit 5d8846b7fcfcf649043605463fd655b5aa6d5ce7 Author: Alan Garny '' Date: Wed Nov 20 17:30:15 2019 +1300 Some minor cleaning up. commit 7f8c2142919c302b77fed948b3342dceb00e5201 Author: Alan Garny '' Date: Wed Nov 20 17:12:31 2019 +1300 Some minor cleaning up. commit 8a646eb3a35e01a59d3b0171d33b30ec2f62fcde Author: Alan Garny '' Date: Wed Nov 20 17:05:59 2019 +1300 Some minor cleaning up. commit 8e7f704456ecfcde47736d146a4c53c3b2a3c872 Author: Alan Garny '' Date: Wed Nov 20 16:29:25 2019 +1300 Simulation support '(Python):' properly handle the addition of a run to a simulation prior to running that simulation. commit 39954b74039bc42b48509f83d5eaf06fb5c52a16 Author: Alan Garny '' Date: Wed Nov 20 15:56:48 2019 +1300 Simulation support '(Python):' reworked our 'clearResults()' wrapper. Indeed, it was working as expected from the GUI, i.e. the results were properly cleared, but not from a Python shell since we used to emit a signal that was only handled by our Simulation Experiment view. commit 1523fd27178ea68d4410b757b0a14ff540efc4bb Author: Alan Garny '' Date: Wed Nov 20 15:26:22 2019 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit 90288a41778e6f0cb51db61de73d627071658a20. commit 5ae000982104a0ed159d1525d2c217929e4cec02 Author: Alan Garny '' Date: Wed Nov 20 15:06:23 2019 +1300 Some minor cleaning up. commit 90288a41778e6f0cb51db61de73d627071658a20 Author: Alan Garny '' Date: Wed Nov 20 15:02:59 2019 +1300 Some minor cleaning up. commit 96c7109786c23aa4c3ccde3d37add0988daccbd0 Author: Alan Garny '' Date: Wed Nov 20 14:28:19 2019 +1300 Some minor cleaning up. commit 59178ab26ed0e65eb6fd7669b5bfdbf5adcf86ab Author: Alan Garny '' Date: Wed Nov 20 14:14:13 2019 +1300 Simulation support '(Python):' renamed 'resetParameters()' to 'reset().' And allow for everything, or not, to be reset, i.e. mimic what the GUI can do. commit e3d183190b4dd41f1c8d003874dffe99ec1b286d Author: Alan Garny '' Date: Wed Nov 20 14:12:35 2019 +1300 Some minor cleaning up. commit b2b1b3628de377899f24d2a7e2f5868503859382 Author: Alan Garny '' Date: Wed Nov 20 14:04:21 2019 +1300 Some minor cleaning up. commit 6e27f9d6b4141305684fbbc15e5e52806a1183a7 Author: Alan Garny '' Date: Wed Nov 20 14:00:49 2019 +1300 Some minor cleaning up. It was last used in 'openRemoteSimulation()' in '[OpenCOR]/src/plugins/support/SimulationSupport/src/simulationsupportpythonwrapper.cpp,' which is now gone. commit 6f701b063cfad6304bafe06936b3a0a5a58008d6 Author: Alan Garny '' Date: Wed Nov 20 13:57:39 2019 +1300 Some minor cleaning up. commit ec909942f43198f4446eb0b2ac446ccddbf78b86 Author: Alan Garny '' Date: Wed Nov 20 13:46:24 2019 +1300 Simulation support: merged our openSimulation and openRemoteSimulation Python wrappers. commit 9f0c9b24c714b7703bb91bc84e23e54114cd23de Author: Alan Garny '' Date: Wed Nov 20 12:06:40 2019 +1300 Some minor cleaning up. commit 555b9e00069d1ce436932bebb19978a72debef8b Author: Alan Garny '' Date: Wed Nov 20 11:29:16 2019 +1300 Python: updated our Lorenz Python script. Also handle remote files. commit d04a644d6e938e1593d4dd68969a4598993af4fe Author: Alan Garny '' Date: Wed Nov 20 11:10:57 2019 +1300 Some minor cleaning up. commit 471399db1bd24d201b7ee4335d06345643f166ce Author: Alan Garny '' Date: Wed Nov 20 10:46:01 2019 +1300 Some minor cleaning up. commit af84fb65982a6e9cb3c994c608acc0103ebc8e4c Author: Alan Garny '' Date: Wed Nov 20 10:45:44 2019 +1300 Simulation Experiment view: fixed a small issue with the tracking of the end of a simulation. If we were to run several simulations at the same time, we might have ended up with one of them having its progress updated '*after*' the simulation finished. commit 7056eaf2c9d5067206a42c4b07770fa4aaeb7787 Author: Alan Garny '' Date: Wed Nov 20 10:09:33 2019 +1300 Some minor cleaning up. commit 2676b35ecb46067dafc03cb14ef74427f037eb61 Author: Alan Garny '' Date: Wed Nov 20 09:41:13 2019 +1300 Python: updated our Lorenz Python script. Use our new OpenCOR module name. commit 08c7c1aeab53ace6dee7ad5ef3796f3d46d13470 Author: Alan Garny '' Date: Wed Nov 20 09:41:00 2019 +1300 Python: updated our Lorenz Python script. 'Don'\''t' generate a 3D plot, so that we can also run our script from a Python shell. commit b0a6ecc21152346be0366685d7409c949e6e6935 Author: Alan Garny '' Date: Wed Nov 20 09:40:07 2019 +1300 Python: respecting PEP 8 when it comes to the name of our OpenCOR module. commit 8dfd52aba0842f34a1c703b5c03fe8d8d17240a2 Author: Alan Garny '' Date: Wed Nov 20 09:38:46 2019 +1300 Some minor cleaning up. commit e629ca0bbd516e1fb53f98ffb8129273c362d60b Author: Alan Garny '' Date: Wed Nov 20 09:22:51 2019 +1300 Some minor cleaning up. In fact, and as a general rule, we should always use full class names in signals/slots. Simple as that. commit 0f0bc5a64b51fe40b46d86bb9613ba78d96c8f74 Author: Alan Garny '' Date: Wed Nov 20 09:19:11 2019 +1300 Python: PythonQt requires full class names for result types. commit 9ab91ae64bbd8cba9a468e3a62680c7a7b4176ba Merge: 0d2512b7e 4835353ca Author: Alan Garny '' Date: Wed Nov 20 09:16:42 2019 +1300 Python: PythonQt requires full class names for result types. commit 4835353ca4dde56fcd4f953156dfea740f3ef35a Author: David Brooks '' Date: Wed Nov 20 08:38:01 2019 +1300 Python: PythonQt requires full class names for result types. commit 0d2512b7e2c8373812f919647a9b1ed4002e75ae Author: Alan Garny '' Date: Tue Nov 19 19:05:29 2019 +1300 Python: updated our Lorenz Python script. commit 87a2257b51c5bda6580c08a0ce35d3c2894a7226 Author: Alan Garny '' Date: Tue Nov 19 18:38:49 2019 +1300 Some minor cleaning up. commit 4535f126f84013ffd3b94715bc6b5fcec4773968 Author: Alan Garny '' Date: Tue Nov 19 18:35:24 2019 +1300 Some minor cleaning up. commit 1ce2114b558ba04872f3009075b983bfad6b88a9 Author: Alan Garny '' Date: Tue Nov 19 18:23:52 2019 +1300 Some minor cleaning up. commit 50f1f0520a7e59b03c377822b3008fa22f885417 Author: Alan Garny '' Date: Tue Nov 19 18:23:41 2019 +1300 Some minor cleaning up. commit f94484a9663f6ccda45e0fd6507009ad7bf1564f Author: Alan Garny '' Date: Tue Nov 19 18:10:10 2019 +1300 Some minor cleaning up. commit 8df403c61574b29746488af7d32c16a34eadc4fb Author: Alan Garny '' Date: Tue Nov 19 18:08:53 2019 +1300 Python: updated our Lorenz Python script. commit 9419001f4d8aa850a1fef5e6e9e476d16085f670 Author: Alan Garny '' Date: Tue Nov 19 18:08:12 2019 +1300 Added a Lorenz COMBINE archive. commit 302371495c06edf7f1fdcfc637dd655af63293b6 Author: Alan Garny '' Date: Tue Nov 19 18:08:02 2019 +1300 Lorenz SED-ML file: added some title to our plots. commit 641af0ed1a94b28c9e7334ef9a6100a244863350 Author: Alan Garny '' Date: Tue Nov 19 15:09:31 2019 +1300 Some minor cleaning up. commit 9a6b83e77a16aa49acdbe871b62eb6b7d935720c Author: Alan Garny '' Date: Tue Nov 19 13:42:59 2019 +1300 Some minor cleaning up. commit 82b59e89ca47d20a19569e2ee8a530b068674e27 Author: Alan Garny '' Date: Tue Nov 19 13:27:43 2019 +1300 Some minor cleaning up. commit 48f052ec9039557bf28de4caedd1fda4f901540f Author: Alan Garny '' Date: Tue Nov 19 13:24:02 2019 +1300 Web Browser window: remove our support for Python. Indeed, there is, at this stage at least, no need for accessing our Web Browser window from Python. commit 82bceeaf9d2d7e7a209873677c75943749d9f540 Author: Alan Garny '' Date: Tue Nov 19 13:12:48 2019 +1300 Some minor cleaning up. commit e9a28d0bdc3ee0683ac914823ac729eaaf1a1f9f Author: Alan Garny '' Date: Tue Nov 19 11:46:36 2019 +1300 Some minor cleaning up. commit 29f78b7f53c17030edec0f08a45e6ab697915e4b Author: Alan Garny '' Date: Tue Nov 19 11:42:52 2019 +1300 Added a Lorenz CellML and SED-ML files, as well as a corresponding Python script and Jupyter notebook. The idea of the Python script will be to test all of our Python wrappers. commit 98eeeadb7bc6e654007a6e225bfef1302763e41a Author: Alan Garny '' Date: Tue Nov 19 09:40:04 2019 +1300 Some minor cleaning up. commit 33f3be81c8caf79b9be2e9d02dad6205a18ab8ba Author: Alan Garny '' Date: Tue Nov 19 09:26:58 2019 +1300 Some minor cleaning up. commit e60dc46ff5613fbda5ce5d0b85a70f51de60d8bc Author: Alan Garny '' Date: Mon Nov 18 15:25:14 2019 +1300 Some minor cleaning up. commit 741cdf3997f01111786a354a722cb56844984870 Author: Alan Garny '' Date: Mon Nov 18 15:07:00 2019 +1300 Some minor cleaning up. commit 0ef8fc0fb108f58e06be1d3ed6faed5a6bafa9c3 Author: Alan Garny '' Date: Mon Nov 18 14:47:51 2019 +1300 Some minor cleaning up. commit 5ef67f08d219d31553eb78d26f6678e23103eff6 Author: Alan Garny '' Date: Mon Nov 18 14:04:47 2019 +1300 Some minor cleaning up. commit 7c6ff6986ab6fc43bf75c6c9616c561a6677e672 Author: Alan Garny '' Date: Mon Nov 18 10:52:11 2019 +1300 Some minor cleaning up. commit cd01836b49560888c93c34e62031ece2ac4debd3 Author: Alan Garny '' Date: Fri Nov 15 18:51:39 2019 +1300 Check. commit 58d4d4beab55686f6e8bba8b193627ceffa4d41e Author: Alan Garny '' Date: Fri Nov 15 16:30:37 2019 +1300 Some minor cleaning up. commit 8aacb311dfce137145fce6cb5862d381715b0476 Author: Alan Garny '' Date: Fri Nov 15 16:13:46 2019 +1300 Some minor cleaning up. commit 303e83fe92eab90a65d01252d2d359634f34afe6 Author: Alan Garny '' Date: Fri Nov 15 16:07:57 2019 +1300 Some minor cleaning up. commit 66eeb036d8a550fdfdb67757413d88e30bfcf191 Author: Alan Garny '' Date: Fri Nov 15 16:01:03 2019 +1300 Some minor cleaning up. commit f51a69537a83ac4ac52175e2fd33b0b64a28c8c9 Merge: 85727a6e7 76fbc4c37 Author: Alan Garny '' Date: Fri Nov 15 12:44:43 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 76fbc4c37a9727ecdd8f41538e94c4c23d22739d Merge: 73101f48d 890a115ed Author: Alan Garny '' Date: Fri Nov 15 12:42:40 2019 +1300 Some minor cleaning up. commit 890a115edf77dd179ce82e6d02adf61299c3ab28 Author: Alan Garny '' Date: Fri Nov 15 12:15:41 2019 +1300 Some minor cleaning up. commit 85727a6e7f9fa714560fde8966b21bbd1a9528bd Author: Alan Garny '' Date: Fri Nov 15 11:57:55 2019 +1300 Some minor cleaning up. mSimulationResults in SimulationData is not used 'anywhere...!?' commit 309009d5b5e3c0acc251ad13e4e52512100dfe5e Merge: edbd8731e 73101f48d Author: Alan Garny '' Date: Fri Nov 15 11:37:26 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 73101f48db26ad48a7a74f81a25acea6fb3e72cc Merge: 6be4bce7b bfb67dbcc Author: Alan Garny '' Date: Fri Nov 15 11:35:33 2019 +1300 Some minor cleaning up. commit bfb67dbcc4ea2eb624692825b8eeae39bc19c097 Author: Alan Garny '' Date: Fri Nov 15 11:01:25 2019 +1300 Some minor cleaning up. commit 3e7d14f0d47ba958b41f641cfd18f8bb423b53ee Author: Alan Garny '' Date: Fri Nov 15 11:01:21 2019 +1300 Some minor cleaning up. commit d1981409c0edbd819121c986ccd881040345c75e Author: Alan Garny '' Date: Fri Nov 15 11:01:09 2019 +1300 Some minor cleaning up. commit 8a08b0f0bed875c2d184314664441aea62f2232d Author: Alan Garny '' Date: Fri Nov 15 10:27:22 2019 +1300 Optimised our use of Q_OS_XXX. We '"only"' support Windows, Linux and macOS. So, if we, for example, check for Windows and Linux, then the only one left must be macOS, in which case there is no need to test for it. commit 6be4bce7bfb610061d08507fca9c0d2aff03c8ba Merge: 1a01626b1 652e833fb Author: Alan Garny '' Date: Thu Nov 14 19:19:17 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR '(closes' '#2211).' commit edbd8731e9fc14e57bded650c8c43b5ae339d20d Author: Alan Garny '' Date: Thu Nov 14 19:13:06 2019 +1300 Some minor cleaning up. commit b0db4d92e7a0da12573c015751ec25b7b3e2df4a Author: Alan Garny '' Date: Thu Nov 14 19:05:05 2019 +1300 Some minor cleaning up. commit 652e833fba18eed37e31239d703334343eba7630 Author: Alan Garny '' Date: Thu Nov 14 17:28:37 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR '(#2211).' commit 1fffe3f8c7273952395992fae46afc8ec4ba8ebd Author: Alan Garny '' Date: Wed Nov 13 17:57:56 2019 +1300 Some minor cleaning up. commit 177fd3b3b8b8fb9e96e74e52ad269cab86882d7a Author: Alan Garny '' Date: Wed Nov 13 17:55:13 2019 +1300 Some minor cleaning up. commit bcf00672f23717edd1ab4cce4b6057cce51f3bd8 Author: Alan Garny '' Date: Wed Nov 13 17:42:08 2019 +1300 Some minor cleaning up. commit ead196055e4d835c369d5f19bffb1cd365b91cf3 Author: Alan Garny '' Date: Wed Nov 13 17:41:22 2019 +1300 Some minor cleaning up. commit 727b3943e94ae45cf49ff6d07563e7284c697063 Author: Alan Garny '' Date: Wed Nov 13 17:07:51 2019 +1300 Some minor cleaning up. commit 439b155af1a7e3c2e6c9d3a67101f12253ddcdec Author: Alan Garny '' Date: Wed Nov 13 15:29:44 2019 +1300 Simulation Experiment view: some clarification. commit 6cd51cdfeeac96e2c16f0047df214c40b143d7ad Author: Alan Garny '' Date: Wed Nov 13 15:29:23 2019 +1300 Some minor cleaning up. commit 61737f228a74056bcc88f11d2cbd7a201db79f74 Author: Alan Garny '' Date: Wed Nov 13 15:12:11 2019 +1300 SimulationExperiment view: updated our translations. commit 9b72057d7660f88159e442780d2dfb03cf4a9f3c Author: Alan Garny '' Date: Wed Nov 13 14:52:44 2019 +1300 Some minor cleaning up. commit 23a6258b7f21467a4131218960278805f0e0f074 Author: Alan Garny '' Date: Wed Nov 13 14:21:55 2019 +1300 Some minor cleaning up. commit fbb323a18c8b02081b4ff5618510debca75253c8 Author: Alan Garny '' Date: Wed Nov 13 13:55:57 2019 +1300 Some minor cleaning up. commit d770b80ecee6af848e54936df0240134d534d444 Author: Alan Garny '' Date: Wed Nov 13 13:09:44 2019 +1300 Python: disable our Jupyer-related scripts in debug mode under Windows. commit 2b428f5bd0a727f2456a7d905b46e81b928c00bf Author: Alan Garny '' Date: Wed Nov 13 13:09:22 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit cf92cca986bc01361f0239cb67d37c84f1a2265c Author: Alan Garny '' Date: Fri Nov 8 14:46:42 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 8a3246820c2cb02b64019b69bd0cd7842969f09a Author: Alan Garny '' Date: Fri Nov 8 14:45:08 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit a5f33b56a107c11ddde3aeb9a1d0a241f2c4c303 Author: Alan Garny '' Date: Fri Nov 8 14:39:06 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 46f003dcee4ce14394f5dd41102755a585f3d3e3 Author: Alan Garny '' Date: Fri Nov 8 12:47:09 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 3687c17fb67ca972fdd9c6c9db1a442f57378c3b Author: Alan Garny '' Date: Mon Nov 4 15:28:34 2019 +0900 PythonPackages: binaries for version 3.7.5. commit 3adfa5b17e766e9d56c812ae341dc3360bf991fa Author: Alan Garny '' Date: Mon Nov 4 15:17:59 2019 +0900 Python: binaries for version 3.7.5. commit b9b69f54a5cf34fb83523fd44ea704f8479a24c6 Author: Alan Garny '' Date: Mon Nov 4 14:46:40 2019 +0900 Python: binaries for version 3.7.5. commit 89817670500088ab92b06dd795a694ac906e3e28 Author: Alan Garny '' Date: Mon Nov 4 14:17:58 2019 +0900 Python: update to version 3.7.5 '(#1255).' commit 934708e087102d89591f686b67bf275ee24d690c Author: Alan Garny '' Date: Mon Nov 4 12:43:37 2019 +0900 Python: track the proper version of 'Python!' commit a2f69c91d32501a7dd91d8b917999896dec2ec1b Author: Alan Garny '' Date: Mon Nov 4 12:21:13 2019 +0900 Python: binaries for version 3.7.5. commit 61af6bcdc75f4ccda0d2ee5dfc1e8fe910ff0496 Merge: 0b851e28b eba254c1f Author: Alan Garny '' Date: Mon Nov 4 12:04:57 2019 +0900 Python: update to version 3.7.5. commit eba254c1f3056b8f739c70bbdc2406a90dbef045 Author: David Brooks '' Date: Mon Nov 4 15:47:28 2019 +1300 Python: update to version 3.7.5 '(#1255).' commit 0b851e28b0947efab89f68be4d07eb59042ed1ed Merge: ccfddeb2b 1a01626b1 Author: Alan Garny '' Date: Mon Nov 4 09:45:13 2019 +0900 Merge branch ''\''master'\''' into issue1255. commit 1a01626b1a4438a4ee63dbfe40ad0518d3619d9c Merge: 3bb61195f 721cee407 Author: Alan Garny '' Date: Mon Nov 4 09:44:25 2019 +0900 QScintilla: upgraded to version 2.11.3 '(closes' '#2208).' commit 721cee4072cf12859fc150feb05e8e89c6b1f026 Author: Alan Garny '' Date: Mon Nov 4 09:18:16 2019 +0900 Slight update to our downloads page '(#2208).' commit 6faeda4309117e631b720e48250c5dd9d6e74472 Author: Alan Garny '' Date: Mon Nov 4 09:18:00 2019 +0900 QScintilla: binaries for version 2.11.3 '(#2208).' commit 94341e39d990f573a0045879fe00f91502f926fd Author: Alan Garny '' Date: Mon Nov 4 09:06:26 2019 +0900 QScintilla: upgraded to version 2.11.3 '(#2208).' commit ccfddeb2ba607b7645ae239fba9820931e98aa88 Author: Alan Garny '' Date: Sun Nov 3 11:41:08 2019 +0900 Some minor cleaning up. commit d4213fb7f3436dd8d194a355dc626b4ca65d9666 Author: Alan Garny '' Date: Sun Nov 3 11:36:58 2019 +0900 Some minmor cleaning up. commit 4d5b2f0f02deba426a8cce94404954024fbd34c2 Author: Alan Garny '' Date: Sun Nov 3 11:34:31 2019 +0900 Revert '"Some' minor cleaning 'up."' This reverts commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7. commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7 Author: Alan Garny '' Date: Sun Nov 3 11:30:28 2019 +0900 Some minor cleaning up. commit 866a2f5297e287838c3d5bb6b0d2049956114c56 Author: Alan Garny '' Date: Sun Nov 3 10:55:44 2019 +0900 Some minor cleaning up. commit 02879e98d5a756f35bc804c7b0aa96cd596a531e Author: Alan Garny '' Date: Sun Nov 3 10:53:02 2019 +0900 Some minor cleaning up. commit ef63de284fcce11b4ffe3b19b6b61ecafecf4588 Merge: 104584f0e 3bb61195f Author: Alan Garny '' Date: Sun Nov 3 10:44:54 2019 +0900 Merge branch ''\''master'\''' into issue1255. commit 3bb61195fa3d40c6dec38b3d201acbadaffdb232 Merge: 2be730ae2 5cf3abd29 Author: Alan Garny '' Date: Sun Nov 3 10:44:11 2019 +0900 Some minor cleaning up. commit 5cf3abd293298a54956cbe1193c7dc141b3345a5 Author: Alan Garny '' Date: Sun Nov 3 10:18:52 2019 +0900 Some minor cleaning up. commit 104584f0e2f542dd6caaf6bd3dff275bcf3ea8eb Author: Alan Garny '' Date: Sun Nov 3 09:33:13 2019 +0900 Python: make sure that our Python home directory exists. commit 4fbf21a924915ab561b933332905e511e52e4e20 Author: Alan Garny '' Date: Sun Nov 3 09:28:17 2019 +0900 Python: make sure that our Python home directory exists. Indeed, 'it'\''s' causing us problems on Windows since '[OpenCOR]/python' 'existed...!' commit 6c7e4bcbd60272a8218190a9fc42edb4f1c8d82b Author: Alan Garny '' Date: Sun Nov 3 09:27:33 2019 +0900 Python: make sure that our Python home directory exists. commit c726d92547f77c17e8ddf39e839e24db357c6f25 Author: Alan Garny '' Date: Sat Nov 2 23:26:17 2019 +0900 Some minor cleaning up. commit fcb75e14bac595274c3b56cd486915c0c45ee324 Author: Alan Garny '' Date: Sat Nov 2 21:40:55 2019 +0900 Some minor cleaning up. commit bce956fed6f3845c4bf76e665fae2c742efaaa55 Author: Alan Garny '' Date: Sat Nov 2 21:35:59 2019 +0900 Some minor cleaning up. commit 95c1cffe44bf69237e49c07f15dc33be2eedc178 Author: Alan Garny '' Date: Sat Nov 2 17:01:56 2019 +0900 Some minor cleaning up. commit f427489eb66dd45c6c3e7545f917e13a14e5efde Author: Alan Garny '' Date: Sat Nov 2 16:47:01 2019 +0900 Some minor cleaning up. commit 01b20dbf844d2a52c1e69eae9357286bdf47cc6d Author: Alan Garny '' Date: Sat Nov 2 15:24:17 2019 +0900 Some minor cleaning up. commit 9ed9adf8b1dd887f86a5cb45884d0ba71eb9e72f Author: Alan Garny '' Date: Sat Nov 2 12:42:45 2019 +0900 Some minor cleaning up. commit 586cb3860defa36308f2ae1616179eb4bfd8e19e Author: Alan Garny '' Date: Sat Nov 2 12:02:29 2019 +0900 Some minor cleaning up. commit 669ff1b4b9e128e04bb913aef471130e2d252f0c Author: Alan Garny '' Date: Sat Nov 2 08:04:12 2019 +0900 Some minor cleaning up. commit afa06adce3280b4b68d9176cd23c396fe7a4decb Author: Alan Garny '' Date: Sat Nov 2 07:55:22 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit 7d1eb56d79090a3002ea073cc660fd4fe46ee357 Author: Alan Garny '' Date: Sat Nov 2 07:53:40 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit 5809a68b9133906edea760ea5e6c68421343b945 Author: Alan Garny '' Date: Sat Nov 2 07:48:11 2019 +0900 Some minor cleaning up. commit 3436e0ef1e343f890c92b274f96b75f70ae2427d Author: Alan Garny '' Date: Fri Nov 1 23:56:02 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit 590a1fd93f2d78bb5932466a13391d5e1dee9e14 Author: Alan Garny '' Date: Fri Nov 1 23:47:28 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit c1f6deecd6e9959bc07600e11beeb239c93139ad Author: Alan Garny '' Date: Fri Nov 1 23:45:47 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit df48d3e6076f23d553ff886d92f4042fd7680d7a Author: Alan Garny '' Date: Fri Nov 1 18:10:18 2019 +0900 Some minor cleaning up. commit c9d89622bf33b7906a9817e6e44fcda7a1dc0e22 Author: Alan Garny '' Date: Fri Nov 1 17:32:24 2019 +0900 Python: moved the '`runjupyter`' to our Python script directory. commit 476ef936c8cd115faa2962e824add62d3d210c3b Author: Alan Garny '' Date: Fri Nov 1 16:23:30 2019 +0900 Some minor cleaning up. commit 9f6fc04bb9c136a24f6a72f570bdbc7f56a5bed7 Author: Alan Garny '' Date: Fri Nov 1 16:15:53 2019 +0900 Some minor cleaning up. commit 06941a50e7af02858c68375b738faec9a7bbc21f Author: Alan Garny '' Date: Fri Nov 1 16:10:55 2019 +0900 Some minor cleaning up. commit 7b9ed093ecc5208d54111de40be9db5874739599 Author: Alan Garny '' Date: Fri Nov 1 16:09:10 2019 +0900 Python: renamed our '`runpython`' script to '`pythonshell`.' commit 37bbfefaa71b462303f5717d34da847d90b752b0 Author: Alan Garny '' Date: Fri Nov 1 16:05:45 2019 +0900 Python: renamed our '`runpython`' script to '`pythonshell`.' commit 2d2e21fd4050bcb0d8d1c0527dcf861ba40b37fb Author: Alan Garny '' Date: Fri Nov 1 14:00:58 2019 +0900 Python: make sure that our scripts support spaces in the OpenCOR path. commit c3f7ff9bf5d03436bf60a72703fd8c84a2fe40ee Author: Alan Garny '' Date: Fri Nov 1 13:56:20 2019 +0900 Python: merged '`setpythonpath`' into '`runjupyter`' since, now, 'it'\''s' only used there. commit 417a7b888bd6fcbd216e8b50b7a0a6faeb3a9ad1 Author: Alan Garny '' Date: Fri Nov 1 12:27:39 2019 +0900 Python package: new binaries for version 4.7.4 '(#1255).' commit 8bc603fe70629249d8eedef134e84c764da05c92 Merge: e7597e8ad d3b802067 Author: Alan Garny '' Date: Fri Nov 1 12:15:32 2019 +0900 Run the set_python_path.py script when starting OpenCOR '(closes' '#2205).' commit d3b8020676cb61bd37b2f88761b516353d06f5c0 Author: David Brooks '' Date: Fri Nov 1 14:41:08 2019 +1300 Python: run the '`set_python_path`' script at initialisation time and no longer during installation or when running the Python shell '(#2205).' commit 1a9301f4dfe04755ab3c30980af45882a077966c Author: David Brooks '' Date: Fri Nov 1 11:24:16 2019 +1300 Python: tidy code '(#2205)' commit e7597e8ad25d768f3cf9af586981177b7f7d7cb9 Author: Alan Garny '' Date: Fri Nov 1 09:31:02 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue '#1255,' but issue '#2206.' commit 58ef84ef1588c4abc8dd2deaba075adba6b917f7 Author: Alan Garny '' Date: Fri Nov 1 09:29:24 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue '#1255,' but issue '#2206.' commit 3eb2a5d9c3925ddeac0d8d9fe723b5c6f6596283 Author: Alan Garny '' Date: Fri Nov 1 09:13:49 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue '#1255,' but issue '#2206.' commit 8808a8e9e42831c951082b6e5055925302a8af05 Author: Alan Garny '' Date: Wed Oct 30 20:44:10 2019 +0900 Python: remove the SolverSupport plugin, which is not used anywhere. commit 5bba18ca8b1bad724ac8d98f88c1f8b84ac37da0 Author: Alan Garny '' Date: Wed Oct 30 17:55:49 2019 +0900 Some minor cleaning up. commit 3932af3fab4846176ce86f83f2196afe0737b564 Author: Alan Garny '' Date: Wed Oct 30 17:44:56 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit ba8d83e7fd386ae96af29ea37e2e0e84b37d3543 Author: Alan Garny '' Date: Wed Oct 30 17:37:11 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit 700f5daeca26b3811fb12a3be27ae3a689da6a47 Author: Alan Garny '' Date: Wed Oct 30 16:57:33 2019 +0900 Python: cleaned up the code for the PythonQtSupport plugin. commit fc5f70dfb9181f9ebd1aa1990e2c3a20c0466266 Author: Alan Garny '' Date: Wed Oct 30 16:46:24 2019 +0900 Some minor cleaning up. commit b6a77b79b6e4363a9b3fc97432c3557f0b829aa0 Author: Alan Garny '' Date: Wed Oct 30 16:29:14 2019 +0900 Some minor cleaning up. commit ae4767057a9d25830db39e3758f25d8f87726aaa Author: Alan Garny '' Date: Wed Oct 30 15:39:55 2019 +0900 Some minor cleaning up. commit 8cacd17f14c5bb9d39f30db36260b3af6bb1b786 Author: Alan Garny '' Date: Wed Oct 30 14:36:00 2019 +0900 Some minor cleaning up. commit 21ad718ab5bb09e27d50516732c8ecffb86cf5cc Merge: 1a89a681d 2be730ae2 Author: Alan Garny '' Date: Wed Oct 30 14:30:35 2019 +0900 Merge branch ''\''master'\''' into issue1255. commit 2be730ae23ec2911dc8ca64cadb116ddbf9c678a Merge: 11fd66a6f 216df6d95 Author: Alan Garny '' Date: Wed Oct 30 14:30:06 2019 +0900 Some minor cleaning up. commit 216df6d95736d3950ea945bb5ef086bf70410c62 Author: Alan Garny '' Date: Wed Oct 30 14:04:29 2019 +0900 Some minor cleaning up. commit 1a89a681de3c9c0ede2d086f2c8cf57c6a9902d5 Author: Alan Garny '' Date: Wed Oct 30 13:48:48 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit a829f58ad595facefdf4ab8e1a5fa109f42f8c15 Author: Alan Garny '' Date: Wed Oct 30 13:12:40 2019 +0900 Some minor cleaning up. commit db2fcfcd5f79caa95a0bfa73934f9344e20c20bc Merge: 52e066cad 11fd66a6f Author: Alan Garny '' Date: Wed Oct 30 12:37:40 2019 +0900 Merge branch ''\''master'\''' into issue1255. commit 11fd66a6f53d8c7d7619f8f93ecc1e3e464f5415 Merge: 647590818 dd3b2848d Author: Alan Garny '' Date: Wed Oct 30 12:35:55 2019 +0900 Some minor cleaning up. commit dd3b2848d09fb0c61dadcc43115e5668e326145c Author: Alan Garny '' Date: Wed Oct 30 12:12:29 2019 +0900 Some minor cleaning up. commit 52e066cad34b6c522c379e3a307330c4eaaad38b Author: Alan Garny '' Date: Wed Oct 30 12:07:12 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit 86b59af18f0fc55b1d945d1a958da2a9b01fb70b Author: Alan Garny '' Date: Wed Oct 30 11:25:37 2019 +0900 Python: cleaned up the code for the PythonShell plugin. commit 60dc1e51d9f50c301a6adbb8bc6b109d31b83758 Author: Alan Garny '' Date: Wed Oct 30 11:21:17 2019 +0900 Python: some minor cleaning up. commit b7ed4c58578030810a54e6355654f4e5a923b98b Author: Alan Garny '' Date: Wed Oct 30 11:20:49 2019 +0900 Python: some minor cleaning up. commit 00f7becffc3ae002c58932f563ef6dbbd5f56fb9 Author: Alan Garny '' Date: Wed Oct 30 10:20:28 2019 +0900 Python: cleaned up the code for the Python Console window. commit b75f7cfe1f1c4c4a768fe444e7a125cf0eaac95d Author: Alan Garny '' Date: Wed Oct 30 10:06:16 2019 +0900 Python: cleaned up the code for the Python Console window. commit 32d6ccd31a6b37eb3b27f29e3b22dc2bc38095bc Author: Alan Garny '' Date: Wed Oct 30 09:34:48 2019 +0900 Some minor cleaning up. commit bc80eb92bffe50db50c9e242c3a873222b4ba99b Merge: e734433c5 647590818 Author: Alan Garny '' Date: Tue Oct 29 23:19:30 2019 +0900 Merge branch ''\''master'\''' into issue1255. commit 647590818266a85e9521a4776620bae76684ba95 Merge: cb1248213 d62d645ea Author: Alan Garny '' Date: Tue Oct 29 23:15:35 2019 +0900 Make Clang-Tidy happy. commit d62d645ea67db5399e34786b4dc95a3c48c54206 Author: Alan Garny '' Date: Tue Oct 29 22:01:48 2019 +0900 Make Clang-Tidy happy. commit e734433c5af1ae4e0547b3e0408ef49a4b906cf3 Merge: b0609b4c2 cb1248213 Author: Alan Garny '' Date: Fri Oct 25 21:52:34 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit cb124821308c3b56a908fa8eaf2d70f6a9616578 Merge: 7875883d6 5f146607a Author: Alan Garny '' Date: Fri Oct 25 21:45:30 2019 +1300 Cleaning up. commit b0609b4c2653ed9674ad48f701b6adfcbf4b0c7d Author: Alan Garny '' Date: Fri Oct 25 19:58:59 2019 +1300 Some minor cleaning up. commit 5f146607a571b0fa07204dfcf3302958d3ee1143 Author: Alan Garny '' Date: Fri Oct 25 19:52:09 2019 +1300 Make Clang-Tidy happy. commit 5f5a60f6a7efe4adff82ed5b7532b7e85f086bf0 Author: Alan Garny '' Date: Fri Oct 25 19:49:03 2019 +1300 Make Clang-Tidy happy. commit b6ea05d79478e21c32b9dbcfab00fd1d9b00135c Author: Alan Garny '' Date: Fri Oct 25 19:39:00 2019 +1300 Make Clang-Tidy happy. commit 8d410e77b0c329996e9ee12d6dd15710de44b3bb Merge: 4ce1ec636 6f501f554 Author: Alan Garny '' Date: Fri Oct 25 19:25:44 2019 +1300 Fix bad cleaning... commit 4ce1ec636178b2f4ef9b075bbdde8caababe45dc Merge: c82cb4096 91d4ffbc1 Author: Alan Garny '' Date: Fri Oct 25 19:24:40 2019 +1300 Give our Python modules a filename otherwise IPython tracebacks are noisy. commit 6f501f554ca3a1cf5b540f13a470ab607d4cf28c Author: David Brooks '' Date: Fri Oct 25 15:21:10 2019 +1300 Python: fix bad cleaning... commit 67469cc42c2f7e5b852c83f720d6f51640e60c24 Author: Alan Garny '' Date: Fri Oct 25 15:15:04 2019 +1300 Make Clang-Tidy happy. commit 6595a1bcb962fa4f16fdf653d6a93d023952b7b4 Author: Alan Garny '' Date: Fri Oct 25 15:11:49 2019 +1300 Make Clang-Tidy happy. commit 5b192f4c36df5bca5a7d5ff6ce234c1878b7f64b Author: Alan Garny '' Date: Fri Oct 25 15:08:25 2019 +1300 Make Clang-Tidy happy. commit 91d4ffbc1b44c4fa2cc5c1a45d6b9c6117c26c29 Author: David Brooks '' Date: Fri Oct 25 15:07:13 2019 +1300 Python: give our modules a filename otherwise IPython tracebacks are noisy. commit 4bcd640cc101ac8bcda8c39a503f30f5b8c93c73 Author: Alan Garny '' Date: Fri Oct 25 14:59:03 2019 +1300 Make Clang-Tidy happy. commit 2277589a3674350af8de02b2b23a9405177902be Author: Alan Garny '' Date: Fri Oct 25 12:59:47 2019 +1300 Make Clang-Tidy happy. commit c82cb40963d11d8e09cba269931df1e236cc60ba Author: Alan Garny '' Date: Fri Oct 25 12:42:20 2019 +1300 Make Clang-Tidy happy. commit 4025159ca631fcf61f45c3678227dc63e91d8589 Author: Alan Garny '' Date: Fri Oct 25 08:38:01 2019 +1300 Python: make sure that our test Zinc window loads before our Python Console window. commit c19ca691e87e61263047ca53c719051fdc7e4884 Author: Alan Garny '' Date: Thu Oct 24 20:02:06 2019 +1300 Some minor cleaning up. commit e95c38fb6d011529e8d77b567faf3efef93d4f3b Author: Alan Garny '' Date: Thu Oct 24 19:56:15 2019 +1300 Some minor cleaning up. commit 665da917f96906d880747a3a49c63a079252e785 Author: Alan Garny '' Date: Thu Oct 24 19:44:20 2019 +1300 Some minor cleaning up. commit afb62d754463f2326978f8c2c8a3d8af837e49cf Author: Alan Garny '' Date: Thu Oct 24 19:29:35 2019 +1300 Clang-Tidy: some new checks '(that' we 'don'\''t' 'want).' commit 83828dd179b81384f962ee3296f7ee84e68cf569 Author: Alan Garny '' Date: Thu Oct 24 19:11:46 2019 +1300 Some minor cleaning up. commit f9d8466a05bc1a27bc72a44e8312f685d5232e61 Author: Alan Garny '' Date: Thu Oct 24 18:12:33 2019 +1300 'Core::openRemoteFile():' 'don'\''t' rely on our file manager to create a local copy of our remote file. Indeed, to call 'FileManager::create()' works, but then to get the file name we need to handle the fileCreated signal, which we 'can'\''t' using 'Core::openRemoteFile().' So, instead, we '"manually"' create a local copy of the remote file. commit d00fb04257e30853c99c6ef901f38b00606c6633 Author: Alan Garny '' Date: Thu Oct 24 17:47:38 2019 +1300 Some minor cleaning up. Fogot to remove that 'line!' commit 657980612ac10d0b0aeb54723ded0bf5670ddd5b Author: Alan Garny '' Date: Thu Oct 24 17:45:28 2019 +1300 Some minor cleaning up. commit 0e9a5016aa37a4099ae15b77be648b152e97c59d Author: Alan Garny '' Date: Thu Oct 24 16:46:55 2019 +1300 Python: our '`runpython`' script now needs to start the '`PythonShell`' plugin. See https://github.com/opencor/opencor/issues/1255#issuecomment-545729293. commit 9794e18256b9414eb5c5231cfe85f25bf390c1ec Author: Alan Garny '' Date: Thu Oct 24 16:42:39 2019 +1300 Revert '"Some' minor cleaning 'up."' Python 'doesn'\''t' like the spaces around '`connection_file`!' See https://github.com/opencor/opencor/issues/1255#issuecomment-545728808. commit 6f140c7fd9b6479bbd72fc46661776fe23d765c3 Author: Alan Garny '' Date: Thu Oct 24 16:39:32 2019 +1300 PythonPackages: updated our binaries. This is following PR agarny/opencor/#7. commit 0da9f975c83b6db9ed3c4ff8c2aba815ff186c46 Merge: 0e4e51147 6a009f154 Author: Alan Garny '' Date: Thu Oct 24 16:06:52 2019 +1300 Fix for scrambled matplotlib display. commit 0e4e511470cfa407ea6f668eb08a3785007a9e71 Author: Alan Garny '' Date: Thu Oct 24 15:59:03 2019 +1300 Python: make sure that '`./jupyterconsole`' works fine. commit 06d4e61549500c77e6650c179134dac0ca295278 Author: Alan Garny '' Date: Thu Oct 24 15:43:25 2019 +1300 Some minor cleaning up. commit 95f6279f78454ee7162e9ea0cb5eccdcd5c92f00 Author: Alan Garny '' Date: Thu Oct 24 15:39:23 2019 +1300 Some minor cleaning up. commit a86786eb8f11b220fe3e60e0e58e1f499edfa888 Author: Alan Garny '' Date: Thu Oct 24 14:17:30 2019 +1300 Some minor cleaning up. commit 19618e613fa3902f854b6cf7003ba48710a37784 Author: Alan Garny '' Date: Thu Oct 24 14:12:56 2019 +1300 Some minor cleaning up. commit 930c47c2f4678f3c12c3b4afa6b105490e39ba17 Author: Alan Garny '' Date: Thu Oct 24 13:56:45 2019 +1300 Partly revert commit cff17fc98. Indeed, by default it would have been equivalent to 'elementsAttributes.values()' and not 'elementsAttributes.keys()' as we want. commit cff17fc98d75c2d519b0954dda5a27f594490214 Author: Alan Garny '' Date: Thu Oct 24 13:46:51 2019 +1300 Some minor cleaning up. commit 6a009f154e555820ea811d770c3ac7e24120e51b Merge: 78757eee4 ad9ca98c6 Author: David Brooks '' Date: Thu Oct 24 13:34:44 2019 +1300 Merge branch ''\''issue1255'\''' into djb-1255 commit 78757eee4ba9e1166c99c30a9e9d6e203e9ab031 Author: David Brooks '' Date: Thu Oct 24 13:32:39 2019 +1300 Python: fix Matplotlib v3 output under PythonQt. commit 9d0b6956d6b67f0efeed6d7a3b8333b2c383d6eb Author: Alan Garny '' Date: Thu Oct 24 11:24:18 2019 +1300 Some minor cleaning up. commit a8075e98438ac0b27c575d05ac850f90301ca9f5 Author: David Brooks '' Date: Thu Oct 24 11:04:33 2019 +1300 Python: fix typo in PythonQt changes for Matplotlib. commit ad9ca98c6979dbe02b2fae16d177fc7693477716 Author: Alan Garny '' Date: Wed Oct 23 18:26:16 2019 +1300 Some minor cleaning up. commit 328d313986cbcfa164c2831891d9fe4d5b39f4a9 Author: Alan Garny '' Date: Wed Oct 23 18:19:39 2019 +1300 Some minor cleaning up. commit 2c216b1d61a2cd1e3dc5e57280d3338830a59a41 Author: Alan Garny '' Date: Wed Oct 23 18:13:09 2019 +1300 Some minor cleaning up. commit 3071e118fef905913425dc9de3b38b465e881c21 Author: Alan Garny '' Date: Wed Oct 23 18:12:14 2019 +1300 Some minor cleaning up. commit 136fa624771dcb8b2f5810630dc8cbab0b4efa33 Author: Alan Garny '' Date: Wed Oct 23 18:07:43 2019 +1300 Some minor cleaning up. commit b9c965d5c60342bab0c73c6c8a3271a40140d3df Author: Alan Garny '' Date: Wed Oct 23 15:31:52 2019 +1300 Some minor cleaning up. Matching what we have in 'CentralWidget::openRemoteFile().' commit b22d59c335e9968bcbcbeb92f5bfb8b7c7115453 Merge: 7a9aec54f 7875883d6 Author: Alan Garny '' Date: Wed Oct 23 12:55:48 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 7875883d6cc33c83135dbcb8034e6559397a4284 Merge: db8c07f34 3c27c9a7b Author: Alan Garny '' Date: Wed Oct 23 12:53:25 2019 +1300 SUNDIALS: upgraded to version 5.0.0 '(closes' '#2198).' commit 3c27c9a7b7c55ed15a403369848afc2e840dc2ac Author: Alan Garny '' Date: Wed Oct 23 12:30:25 2019 +1300 Slight update to our downloads page '(#2198).' commit c5c9975e999c0faa523473e5c5bdc408010a02ce Merge: 1884f5e3e db8c07f34 Author: Alan Garny '' Date: Wed Oct 23 12:28:47 2019 +1300 Merge branch ''\''master'\''' into issue2198. commit 1884f5e3e97747f05973bec3547fbee3e71b7205 Author: Alan Garny '' Date: Wed Oct 23 12:27:56 2019 +1300 SUNDIALS: binaries for version 5.0.0 '(#2198).' commit db8c07f34bb808cd91809cb19be23eba38acacef Merge: 4e60f99bd da1a01211 Author: Alan Garny '' Date: Wed Oct 23 12:24:53 2019 +1300 Mesa: upgraded to version 19.2.1 '(closes' '#2197).' commit f511f90fd24df90e04a1006b790da80ec6657f84 Author: Alan Garny '' Date: Wed Oct 23 12:19:28 2019 +1300 SUNDIALS: upgraded to version 5.0.0 '(#2198).' commit c5d793f65568ad5297543f3e9ef32695ddfc1d54 Author: Alan Garny '' Date: Wed Oct 23 12:13:41 2019 +1300 SUNDIALS: upgraded to version 5.0.0 '(#2198).' commit da1a0121193c4247360ac179eb317ba2cca598c3 Author: Alan Garny '' Date: Wed Oct 23 12:03:14 2019 +1300 Slight update to our downloads page '(#2197).' commit 5f0a86132438b6ebbfa3c91361d40d9eebee56fc Author: Alan Garny '' Date: Wed Oct 23 11:59:16 2019 +1300 Mesa package: binary for version 19.2.1 '(#2197).' commit b209f154cf96657b3d6e9d233e41249cfbc50f2a Author: Alan Garny '' Date: Wed Oct 23 11:43:56 2019 +1300 Mesa: upgraded to version 19.2.1 '(#2197).' commit 7a9aec54f27b9ac2082ff6132608872a6d3bc215 Author: Alan Garny '' Date: Wed Oct 23 11:14:18 2019 +1300 Some minor cleaning up. commit 64e936eff9edcb73f1e914399ae4f2a60ac11362 Author: Alan Garny '' Date: Wed Oct 23 11:12:22 2019 +1300 Python: no need for a call to '`SetDllDirectoryW()`' anymore. commit e1fdbfd113c3b0b3a0910d56811fbe8b63e3222b Author: Alan Garny '' Date: Wed Oct 23 11:08:41 2019 +1300 Some minor cleaning up. commit 5c72467701096994ce9d1ccc6941d7af39496b0c Author: Alan Garny '' Date: Tue Oct 22 17:20:45 2019 +1300 Some minor cleaning up. commit 0e56367adac220ccc05094df283bdf531e9cd638 Merge: af8ee0d7d 4e60f99bd Author: Alan Garny '' Date: Tue Oct 22 17:06:23 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 4e60f99bd6b03b880de843d1522ab38dce4a7963 Author: Alan Garny '' Date: Tue Oct 22 17:05:41 2019 +1300 Some minor cleaning up. commit af8ee0d7d822249670a357b00ff995c715bd8809 Author: Alan Garny '' Date: Tue Oct 22 16:59:56 2019 +1300 Some minor cleaning up. commit a483e516cdd8e64b7dc5abda58fa1fa0234c5ac9 Merge: 9b99e6443 7d36fb04f Author: Alan Garny '' Date: Tue Oct 22 16:44:23 2019 +1300 Merge branch ''\''issue1255'\''' of https://github.com/agarny/opencor into issue1255 commit 9b99e64433a37ce10190ebaac0015af5700eb1d7 Merge: 7914033e9 f1f1b0c19 Author: Alan Garny '' Date: Tue Oct 22 16:43:52 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 7914033e925934c77621c1205ce14406e0cec5c6 Author: Alan Garny '' Date: Tue Oct 22 16:41:31 2019 +1300 Some minor cleaning up. commit f1f1b0c192454206fdbc7da9c07820944b210031 Author: Alan Garny '' Date: Tue Oct 22 16:37:51 2019 +1300 Some minor cleaning up. commit 4de15ba7afd744793dd04d768fc853da91d0e73d Author: Alan Garny '' Date: Tue Oct 22 16:16:43 2019 +1300 Some minor cleaning up. commit c80733c7516d9ca26d9c9c52a7b992a7244b41fc Author: Alan Garny '' Date: Tue Oct 22 16:16:40 2019 +1300 Some minor cleaning up. commit 9f98faa7678b0f04dc1dc40c2fe3e77f33f73427 Author: Alan Garny '' Date: Tue Oct 22 16:16:30 2019 +1300 Some minor cleaning up. commit db55bf84fccc1d554a1a529cf873ae732d8c0789 Author: Alan Garny '' Date: Tue Oct 22 16:16:27 2019 +1300 Some minor cleaning up. commit 7d36fb04fc9e3e3b531739d597e8348987139c92 Merge: 52f4117fe f6f575400 Author: Alan Garny '' Date: Tue Oct 22 15:20:29 2019 +1300 Merge branch ''\''issue1255'\''' of https://github.com/agarny/opencor into issue1255 commit 52f4117fe901063de080a27e242cc2c8ab724661 Merge: 6e85cb0cf f5e794870 Author: Alan Garny '' Date: Tue Oct 22 15:20:03 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit 6e85cb0cf1eee613d5b3cc788c7e7a2d5f3a7e36 Author: Alan Garny '' Date: Tue Oct 22 15:17:57 2019 +1300 Some minor cleaning up. commit f5e794870b4095da068b582da245dd3707264159 Author: Alan Garny '' Date: Tue Oct 22 15:10:47 2019 +1300 Some minor cleaning up. commit f6f57540058579b0b626230d6fc35c41b7367db5 Author: Alan Garny '' Date: Tue Oct 22 14:48:15 2019 +1300 Some minor cleaning up. commit 5fc6c3cefcf13249c62bb5e73e2923023b2ef7b9 Merge: f53b0b0a0 9985e5f4e Author: Alan Garny '' Date: Tue Oct 22 14:10:07 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit f53b0b0a03ed1d0d3a0e4aa98884857ef49b80fe Author: Alan Garny '' Date: Tue Oct 22 14:09:27 2019 +1300 Some minor cleaning up. commit 9985e5f4e8c5fc975e252101e7091b9f2eaddb03 Author: Alan Garny '' Date: Tue Oct 22 14:08:34 2019 +1300 Some minor cleaning up. commit 6f930be87427a2671a8d0198982c9c3b534f5800 Author: Alan Garny '' Date: Tue Oct 22 14:08:07 2019 +1300 Some minor cleaning up. commit afe339abaa4d0a17dfe1938adbeee86d71c4cebe Author: Alan Garny '' Date: Tue Oct 22 13:34:45 2019 +1300 Python package: new binaries for version 3.7.4. commit f3bf2f4bc4832bfb49f7e9062d03a22f247a1e1d Merge: 2ceaf736f c1f3df0c9 Author: Alan Garny '' Date: Tue Oct 22 13:17:05 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit c1f3df0c91d8ca0d8509289b0807d72356d24839 Merge: f68b136cc 3d34c95b6 Author: Alan Garny '' Date: Tue Oct 22 13:11:53 2019 +1300 Some minor cleaning up. commit 2ceaf736f9a81ecf575e006ab9b07957502e5a66 Author: Alan Garny '' Date: Tue Oct 22 13:10:34 2019 +1300 Some minor cleaning up. commit 3d34c95b60350ff76eafe759e715f24fec7d018c Author: Alan Garny '' Date: Tue Oct 22 12:31:47 2019 +1300 Some minor cleaning up. commit 4bddf4a5a7198383d14b8e6f635db9b3bb42b97e Author: Alan Garny '' Date: Tue Oct 22 10:55:48 2019 +1300 Some minor cleaning up. commit 6761c07fc4943766d11be9e370dbb34032d31b5e Author: Alan Garny '' Date: Tue Oct 22 10:45:10 2019 +1300 Some minor cleaning up. commit 4c79a4e81e5e09b18951c6cd7e02def57df65943 Author: Alan Garny '' Date: Tue Oct 22 10:26:51 2019 +1300 Some minor cleaning up. commit fe193545a1f72ef47ce619495d2251c6327a4254 Author: Alan Garny '' Date: Mon Oct 21 19:10:13 2019 +1300 Some minor cleaning up. commit a84a9aada5ebae621dbc28e723746a5eda4cf19e Author: Alan Garny '' Date: Mon Oct 21 17:32:52 2019 +1300 Some minor cleaning up. commit 09fc0d6d00f52a742ab69efcb898a38f542a2716 Author: Alan Garny '' Date: Mon Oct 21 16:21:13 2019 +1300 Some minor cleaning up. commit 127aed2987211a52d582d3d300844b38350ec6ff Author: Alan Garny '' Date: Mon Oct 21 16:08:07 2019 +1300 Some minor cleaning up. commit 25ecc1fe8eb1ac4e59a606e14eba44104bb9d793 Author: Alan Garny '' Date: Mon Oct 21 14:45:33 2019 +1300 Some minor cleaning up. commit 0e76cdd6422c07e91f87a1400992014335b06acb Author: Alan Garny '' Date: Mon Oct 21 14:42:36 2019 +1300 Some minor cleaning up. commit 53165d61725a55ab40fbdc91eb1ea531085ac579 Author: Alan Garny '' Date: Mon Oct 21 14:37:55 2019 +1300 Some minor cleaning up. commit 3286db2abd3071653fc6d000ee4c4f9e60ab493d Author: Alan Garny '' Date: Mon Oct 21 14:37:27 2019 +1300 Some minor cleaning up. commit 6d39d2bab3e9f8c153bbb87ba80bc6582715d7f0 Author: Alan Garny '' Date: Mon Oct 21 14:30:41 2019 +1300 Some minor cleaning up. commit 20b382571b548de62e47b8a45b7602d3a9457354 Author: Alan Garny '' Date: Mon Oct 21 14:13:05 2019 +1300 Some minor cleaning up. commit 917a68d5d6853fc03294d310d64d097674e86be5 Author: Alan Garny '' Date: Mon Oct 21 13:52:34 2019 +1300 Some minor cleaning up. commit e4ba90f46bdcf05b86e585f70a71c808cc2bf4e4 Author: Alan Garny '' Date: Mon Oct 21 13:41:44 2019 +1300 Some minor cleaning up. commit cce1876bf62ecb986e24031619a431800e30d7d1 Author: Alan Garny '' Date: Mon Oct 21 12:35:03 2019 +1300 Some minor cleaning up. commit a8ab7744598b831caa0b23649b30ba1f50294b74 Author: Alan Garny '' Date: Mon Oct 21 11:46:55 2019 +1300 Some minor cleaning up. commit 8d978ea30ed2be9b18ace1feda98de89029c2d5d Merge: 717536f09 1e2c2520a Author: Alan Garny '' Date: Mon Oct 21 11:29:45 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit f68b136ccacffb9ca2f63f0ce93384f30d9d0bc1 Merge: b9bbd6d7f 1e2c2520a Author: Alan Garny '' Date: Mon Oct 21 11:28:57 2019 +1300 Some minor cleaning up. commit 717536f09060b6a69f25b64a2aa23cca7db7761f Author: Alan Garny '' Date: Mon Oct 21 11:26:30 2019 +1300 Python: renamed '`datastorenumpy.h`' to '`datastorepythonnumpy.h`.' commit 1e2c2520a280317ec2fe49866272310b49e57964 Author: Alan Garny '' Date: Mon Oct 21 11:05:30 2019 +1300 Some minor cleaning up. commit 65f4ecab60d5fa14f650f8a00d614c7280e35be8 Author: Alan Garny '' Date: Mon Oct 21 10:53:15 2019 +1300 Python Console window: we 'don'\''t' want a border. Also, we 'don'\''t' need a top border on macOS. commit 6bc0c190279940699e6c5016c0a61a0cedc9dfab Author: Alan Garny '' Date: Mon Oct 21 10:45:19 2019 +1300 Some minor cleaning up. commit 50bbcb06b9d5897f5d29857f194bddc31fecac1c Author: Alan Garny '' Date: Mon Oct 21 10:36:26 2019 +1300 Some minor cleaning up. commit 31531a5d407b7a4c9714bf5c81f971198dc7788a Author: Alan Garny '' Date: Mon Oct 21 10:18:01 2019 +1300 Python: Python: our Python support should only concern our Python interface '(and' not also our Solver 'interface).' commit e9b2ef9dbe9198188fb7153d6326c86804d0f477 Author: Alan Garny '' Date: Mon Oct 21 10:08:17 2019 +1300 Some minor cleaning up. commit a4a60a9230ce17c31c9e64a7450569513c7b2a1f Author: Alan Garny '' Date: Mon Oct 21 09:16:41 2019 +1300 Python: make sure that our '`Web' 'Browser`' window plugin gets loaded after our '`Python' 'Console`' one. commit d8e37e51c31099bda39afb855faba30fe951e2f0 Author: Alan Garny '' Date: Fri Oct 18 19:56:22 2019 +1300 PythonQt package: new binaries for version 3.2.2 '(#1255).' commit c189c42f96bd6b817267ee591e4e1aa4b3fd7449 Author: Alan Garny '' Date: Fri Oct 18 19:43:19 2019 +1300 Revert '"Build' our PythonQt 'package."' This reverts commit f825e33860450fefaf83f8af1661db0b8e2e2257. commit 598f250b9b407aa2e9d199a23a17e697d9596637 Author: Alan Garny '' Date: Fri Oct 18 16:32:16 2019 +1300 PythonQt package: use the correct release and Git tag values. commit 0c5f9e6c96292155cb6099028632840e696a73ca Author: Alan Garny '' Date: Fri Oct 18 16:31:53 2019 +1300 Some minor cleaning up. commit f825e33860450fefaf83f8af1661db0b8e2e2257 Author: Alan Garny '' Date: Fri Oct 18 16:27:55 2019 +1300 Build our PythonQt package. commit a2a927cc5178d6549d0fa0aa466c3025f49dd2bd Author: Alan Garny '' Date: Fri Oct 18 16:27:16 2019 +1300 Some minor cleaning up. commit e2f5a0c30402c9994bdfcb8dcf75ea57f74087c2 Author: Alan Garny '' Date: Fri Oct 18 16:09:59 2019 +1300 PythonQt package: removed its README.rst file. This should, instead, be part of the developer documentation. commit 7471614573fd6681c789f79cdfd8b546b93c578c Author: Alan Garny '' Date: Fri Oct 18 16:08:47 2019 +1300 Python: renamed our PythonQtAPI plugin to PythonQt. commit 94569add63e836f06d57c0ca3902c68d0cadc62d Author: Alan Garny '' Date: Fri Oct 18 15:48:26 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 '(#1255).' commit 98cb111d5a33450961c3a6d54ad5c45baf312c10 Author: Alan Garny '' Date: Fri Oct 18 15:19:22 2019 +1300 Some minor cleaning up. commit de7b45f3328100a7b1272ad4634acf0b3bed4092 Author: Alan Garny '' Date: Fri Oct 18 14:56:23 2019 +1300 Some minor cleaning up. commit 8c395dd1d048443a857afa069b07a82c72f0ae4a Author: Alan Garny '' Date: Fri Oct 18 14:40:40 2019 +1300 Some minor cleaning up. commit 22db05f8df78a8c0d5bb04ac74390f7567f2f973 Author: Alan Garny '' Date: Fri Oct 18 12:29:31 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 '(#1255).' commit 921d40ea7d179427ae25f6d1c7ad1ec7493af095 Author: Alan Garny '' Date: Fri Oct 18 12:22:51 2019 +1300 Python package: new binaries for version 3.7.4 '(#1255).' commit dbad2915f9a6e187bf96ef5f418bba868566224f Author: Alan Garny '' Date: Fri Oct 18 11:46:03 2019 +1300 Revert '"Only' build our PythonPackages 'package."' This reverts commit c9b7d62e1346b48729ced8c253494e3610a5a7b3. commit 4e14fe4aa30a32188cb05a845349a9a75f4e4ad2 Author: Alan Garny '' Date: Fri Oct 18 11:44:29 2019 +1300 PythonPackages package: use the correct release tag. commit c9b7d62e1346b48729ced8c253494e3610a5a7b3 Author: Alan Garny '' Date: Fri Oct 18 11:43:41 2019 +1300 Only build our PythonPackages package. commit e660870d9d3a413a09cb67d984f65b954bfa17fe Merge: 69ff4f0a3 b9bbd6d7f Author: Alan Garny '' Date: Fri Oct 18 11:31:00 2019 +1300 Merge branch ''\''master'\''' into issue1255. commit b9bbd6d7fe4c4ede81fe4a708c25bbe297250a61 Merge: fc03a459f cf171f179 Author: Alan Garny '' Date: Fri Oct 18 11:28:52 2019 +1300 Some minor cleaning up. commit cf171f179d2aee3f73d737200d1bf7541304bd32 Author: Alan Garny '' Date: Fri Oct 18 11:07:23 2019 +1300 Some minor cleaning up. commit 69ff4f0a3bb81735acce51f00b9fe3181ceadcbe Author: Alan Garny '' Date: Fri Oct 18 11:03:26 2019 +1300 Some minor cleaning up. commit 4f4247e2b32577d5a8eb351e183472311edd2c95 Author: Alan Garny '' Date: Fri Oct 18 10:50:17 2019 +1300 Some minor cleaning up. commit 9638ea7acf5ae67fe322a76a5896ffe549006585 Author: Alan Garny '' Date: Fri Oct 18 10:23:38 2019 +1300 Python package: new binaries for version 3.7.4 '(#1255).' commit 8135848872afdf4b145174c4b7e0d8d5a3bc986c Author: Alan Garny '' Date: Fri Oct 18 10:23:19 2019 +1300 Revert '"Only' build the Python 'package."' This reverts commit 3618921194209a62fb8f32144d2d0eaeffbe1c53. commit 21fa5b7221878501d49be898f1ac06ff002ff3db Author: Alan Garny '' Date: Fri Oct 18 10:12:59 2019 +1300 Python package: renamed the package name and use the correct release tag. commit 3618921194209a62fb8f32144d2d0eaeffbe1c53 Author: Alan Garny '' Date: Fri Oct 18 10:12:45 2019 +1300 Only build the Python package. commit 378de01bf8e518f50795b65f2bfe8d866864929b Author: Alan Garny '' Date: Fri Oct 18 09:17:52 2019 +1300 Some minor cleaning up. commit 615beb68328205fe748d6067ea99f7418bf6b5d4 Author: Alan Garny '' Date: Fri Oct 18 08:49:09 2019 +1300 Some minor cleaning up. commit 3a212b129834da1244cbf74063208576b77798b6 Author: Alan Garny '' Date: Fri Oct 18 08:45:17 2019 +1300 Some minor cleaning up. commit cb4401dd2b2f0dff38374cacecd111e92f6fa262 Author: Alan Garny '' Date: Thu Oct 17 18:57:28 2019 +1300 Some minor cleaning up. commit 6ab2594324213aec619afb939b8a853415c98fbb Author: Alan Garny '' Date: Thu Oct 17 18:55:52 2019 +1300 Some minor cleaning up. commit 16927b3dc619e829df9672e01657ca84e7973a66 Author: Alan Garny '' Date: Thu Oct 17 18:28:29 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin commit de7f698b7bc37749e1c4b0dcedcb01e87c536070 Author: Alan Garny '' Date: Thu Oct 17 18:25:20 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin commit f7fdd7b4ed4b1cfae7e98679dfa1382e45cf2070 Merge: 1f04c1787 fc03a459f Author: Alan Garny '' Date: Thu Oct 17 18:24:38 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin commit 1f04c1787f1d3ee7fabe8670e8a7c18acbd892aa Author: Alan Garny '' Date: Thu Oct 17 18:23:20 2019 +1300 Some minor cleaning up. commit fc03a459f5acf49cbdea6973112093fd4670b355 Merge: 18fb385a4 4245711d1 Author: Alan Garny '' Date: Thu Oct 17 18:22:14 2019 +1300 Some minor cleaning up. commit 4245711d128aa670a7399bcad1e79f4e63569b78 Author: Alan Garny '' Date: Thu Oct 17 17:34:10 2019 +1300 Some minor cleaning up. commit 0c72485d388ab830aca64eccee1f1138819d533a Author: Alan Garny '' Date: Thu Oct 17 17:34:01 2019 +1300 Some minor cleaning up. commit 48d3ba425ee03c809637c3db403d4ab9dba233eb Author: Alan Garny '' Date: Thu Oct 17 17:09:17 2019 +1300 Some minor cleaning up. commit 01ea1c26b2a88e3e40561d5def67dcc35801c66a Author: Alan Garny '' Date: Thu Oct 17 17:05:56 2019 +1300 Some minor cleaning up. commit 81b3061c6a7286d36f1309210578c97a2d6af272 Author: Alan Garny '' Date: Thu Oct 17 16:04:38 2019 +1300 Python: renamed our Shell scripts. commit 6c26a783ab2882d52e17ccd40a22986b44be4f6f Author: Alan Garny '' Date: Thu Oct 17 14:50:28 2019 +1300 Some minor cleaning up. commit ec385cd85a2fd55c5d6bb775d20191e8afdf2ed4 Author: Alan Garny '' Date: Thu Oct 17 14:41:41 2019 +1300 Python: have our '`xxx.sh`' Shell scripts deployed as '`xxx`' '[ci' 'skip].' commit 1b2e4c11402bbd7c2e868019aea33cae842fceb0 Author: Alan Garny '' Date: Thu Oct 17 14:18:14 2019 +1300 Some minor cleaning up. commit 1b99a5b877ec06ddf376e105f776481eb75e2505 Author: Alan Garny '' Date: Thu Oct 17 14:11:00 2019 +1300 Revert '"Python:' renamed some scripts '[ci' 'skip]."' This reverts commit e6600abb259efc3ca5d4e02e0edffa6402f040e6. Indeed, on Linux, the filename for our OpenCOR application is '`OpenCOR`' and so is the one for our application script, so... that 'can'\''t' work, hence we revert and are instead going to rename files when installing them. commit e6600abb259efc3ca5d4e02e0edffa6402f040e6 Author: Alan Garny '' Date: Thu Oct 17 14:01:00 2019 +1300 Python: renamed some scripts '[ci' 'skip].' commit 5d4d08e415f3c1a14d1109ce81ae3af48019ca0d Author: Alan Garny '' Date: Thu Oct 17 12:31:08 2019 +1300 Python: renamed some scripts '[ci' 'skip].' commit 39aa4dccac475838fa9120d080a1b56e6e40bd7d Author: Alan Garny '' Date: Thu Oct 17 12:10:04 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. '[ci' 'skip]' The idea is to be able to test Python-related things without first having to package and '"install"' OpenCOR. commit aa29cc1d0a47b1629b4165d450dd7298c7315146 Author: Alan Garny '' Date: Wed Oct 16 18:40:23 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and '"install"' OpenCOR. commit 36355e65e92e60204f7c6adb82f31be569955c0b Author: Alan Garny '' Date: Wed Oct 16 18:34:20 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and '"install"' OpenCOR. commit 44031312e4d6fc14bb0b5049d7a409d079e4c5a4 Author: Alan Garny '' Date: Wed Oct 16 18:21:12 2019 +1300 Some minor cleaning up. commit e252918c0dd815258d0282fb0514be34ac01c4ab Merge: af7a7f0c6 18fb385a4 Author: Alan Garny '' Date: Wed Oct 16 18:02:11 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin. commit 18fb385a49b8d1b233f7cf127a8c0d2a5f119c2f Merge: 2a6aad96d 49f03f2b2 Author: Alan Garny '' Date: Wed Oct 16 18:00:01 2019 +1300 General: updated our different developer scripts. commit af7a7f0c649748b5895cf8d53899cd8949b276fb Author: Alan Garny '' Date: Wed Oct 16 17:59:26 2019 +1300 Python: make our '`ipythonconsole.sh`' files configurable. commit e641693126fb42b9b6fd6cd3dfb272a42869a90a Author: Alan Garny '' Date: Wed Oct 16 17:54:44 2019 +1300 Python: make '`ipythonconsole.bat`' configurable. commit 77b768969aa0eb5d8c50d94d3ba98fa37d8d61e4 Author: Alan Garny '' Date: Wed Oct 16 17:54:10 2019 +1300 Some minor cleaning up. commit 49f03f2b2ef506948b92206d0a9b40761b39a143 Author: Alan Garny '' Date: Wed Oct 16 17:38:01 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 6dfdeba94522a5f1c2db964c9fb8972c67572445 Author: Alan Garny '' Date: Wed Oct 16 17:14:30 2019 +1300 Python: some minor cleaning up. commit b960c79a99b88b3f7fe1783df01430b362cce018 Author: Alan Garny '' Date: Wed Oct 16 17:14:10 2019 +1300 Python: renamed some scripts. commit f17bcaaa770baa8bd63aad64961dce3036b04fda Author: Alan Garny '' Date: Wed Oct 16 17:13:41 2019 +1300 Some minor cleaning up. commit ad14917d0ebf803d9feb2a34a57e8916fd9fb652 Author: Alan Garny '' Date: Wed Oct 16 16:44:57 2019 +1300 Python: some minor cleaning up of our various Python-related scripts. commit 75726d8297cd39d4e4355e01ca0229c2c92fa7dc Author: Alan Garny '' Date: Wed Oct 16 16:26:04 2019 +1300 Some minor cleaning up. commit 405ad80c19e3fbd1f4f2d747e987050528f4d0a4 Author: Alan Garny '' Date: Wed Oct 16 16:19:51 2019 +1300 General: make sure that our deployed Windows scripts can be run from anywhere. ... and thus be consistent with what is now done for ou Linux and macOS scripts. commit 54ffac424164e37b87b9cb06d2e25931f1b038b1 Author: Alan Garny '' Date: Wed Oct 16 16:02:45 2019 +1300 Some minor cleaning up. commit 9acc9760e805132a5b46788c17b0f1f7731d8a72 Author: Alan Garny '' Date: Wed Oct 16 15:52:03 2019 +1300 Python: renamed some scripts. commit 1540de1fdf0ebd9a97227bbaf91afe0410b8fb6d Author: Alan Garny '' Date: Wed Oct 16 15:14:02 2019 +1300 Some minor cleaning up. commit 6f60993bdde226d7e8fa8a448f8e68a6c6a70c87 Author: Alan Garny '' Date: Wed Oct 16 15:08:48 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 47548d6a6119bdd637f825ecfcc761c5dd100f6f Author: Alan Garny '' Date: Wed Oct 16 15:03:51 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a87902b20ada99b885c58c22ceb86bc7d8ff4f42 Author: Alan Garny '' Date: Wed Oct 16 14:30:14 2019 +1300 General: updated our different developer Batch and VBScript files. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a2304150395a79567d7a0a5a214b8d0c752fd65c Author: Alan Garny '' Date: Wed Oct 16 13:02:26 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 56bcacee8eae75cb46d24cd95f84fc5816e8f43f Author: Alan Garny '' Date: Wed Oct 16 10:42:58 2019 +1300 Python: made our various distribution Shell scripts executable. commit 41e1407a6fbddba53f10a45442406f959f3fe450 Author: Alan Garny '' Date: Tue Oct 15 18:14:41 2019 +1300 Some minor cleaning up. commit 46671013d3590785f0332b6c419f31e57721ce62 Author: Alan Garny '' Date: Tue Oct 15 17:51:18 2019 +1300 Python: renamed our '`PythonQtConsoleWindow`' plugin to '`PythonConsoleWindow`.' commit 7884231fa8eca5f3ee4c214efc87691931791ef9 Author: Alan Garny '' Date: Tue Oct 15 17:34:22 2019 +1300 Some minor cleaning up. commit 580e47bf166703bacf25a8c80062c3dfd9416d28 Author: Alan Garny '' Date: Tue Oct 15 17:22:30 2019 +1300 Some minor cleaning up. commit 49b4d530e61bc9e522123c7af134eafcad856c29 Merge: 05ecada9d 2a6aad96d Author: Alan Garny '' Date: Tue Oct 15 16:18:46 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin commit 2a6aad96d075257980104c803bccd04973b305cb Merge: aeccb6986 601c7a574 Author: Alan Garny '' Date: Tue Oct 15 16:02:05 2019 +1300 Cleaning up. commit 601c7a57414ef371ac2bbc43ed6f761c160d9ae1 Author: Alan Garny '' Date: Tue Oct 15 14:56:23 2019 +1300 Some minor cleaning up. commit 05ecada9d85a26a1180dd7f06b8ae088a4f3e9d6 Author: Alan Garny '' Date: Tue Oct 15 14:55:35 2019 +1300 Some minor cleaning up. commit e4f36376e75ae197d1c0150a15751d67e48697ee Author: Alan Garny '' Date: Tue Oct 15 14:48:29 2019 +1300 CMake: improved the way we build our plugins and packages. commit d726acd37a7a3a5079781afa39f7d93ea946383f Author: Alan Garny '' Date: Tue Oct 15 14:34:01 2019 +1300 Some minor cleaning up. commit 7bcaf499788eaa222aa3fd01907f9fd3ced564bf Author: Alan Garny '' Date: Tue Oct 15 14:16:19 2019 +1300 CMake: renamed '`PYTHON_VERSION`' to '`PYTHON_SUPPORT`' and '`GUI_VERSION`' to '`GUI_SUPPORT`.' More meaningful this way, not to mention that '`PYTHON_VERSION`' is used elsewhere in our CMake 'code!' commit ab8a8f8ecb7d0a5b370dbd076b8b13d20343aaa7 Author: Alan Garny '' Date: Tue Oct 15 13:55:35 2019 +1300 Some minor cleaning up. commit cc29b06fbc40d05162114dc6592ce4919525274a Author: Alan Garny '' Date: Tue Oct 15 13:54:28 2019 +1300 CMake: improved the way we build our plugins and packages. commit 20269f819b5ae32d6b41909c98681c68b906ce24 Author: Alan Garny '' Date: Tue Oct 15 13:35:16 2019 +1300 Some minor cleaning up. commit 958f9f570e5bb43bb80eb17bc27e503e3bc23b57 Author: Alan Garny '' Date: Tue Oct 15 13:26:27 2019 +1300 Some minor cleaning up. commit e68fee89d14661cbdc94d1f56b485933e068c7fa Author: Alan Garny '' Date: Tue Oct 15 13:10:50 2019 +1300 Some minor cleaning up. commit b36236520bb1ef612bca0d0d6efc206bed175259 Author: Alan Garny '' Date: Tue Oct 15 09:48:16 2019 +1300 Python: temporarily rely the '`win-debug`' branch of '`dbrnz/python-cmake-buildsystem`.' See https://github.com/opencor/opencor/pull/2160#issuecomment-541552006 for the rationale behind it. commit 8238e3220acb3da04c4ef238fb5491c82da8ee87 Author: Alan Garny '' Date: Mon Oct 14 18:34:25 2019 +1300 Python: some minor cleaning up. I am assuming that '`set(GIT_TAG' '"win-debug")`' was a leftover of @dbrnz working on Windows+Debug version of Python. commit c7b5c81e88f8456de8c6c829622201ba912c4c06 Author: Alan Garny '' Date: Mon Oct 14 18:15:51 2019 +1300 Python: replaced our CMake '`EXCLUDE_PYTHON`' definition with '`PYTHON_VERSION`.' To be consistent with our use of '`CLI_VERSION`,' which we have incidently renamed to '`GUI_VERSION`.' commit 17ae87bffe0d769b71c098a466664eb2c3e77d77 Author: Alan Garny '' Date: Mon Oct 14 17:34:35 2019 +1300 Python: replaced our CMake '`EXCLUDE_PYTHON`' definition with '`PYTHON_VERSION`.' To be consistent with our use of '`CLI_VERSION`,' which we have incidently renamed to '`GUI_VERSION`.' commit 79f3f2f1147c2158819ab3905d1557169e8ae793 Author: Alan Garny '' Date: Mon Oct 14 17:03:25 2019 +1300 Python: some minor cleaning up with the use of our Python interface file. commit 63348d94bcdc27e2c2dccfe5eeb86161996b07d5 Author: Alan Garny '' Date: Mon Oct 14 16:56:41 2019 +1300 Python: renamed '`Python' 'Qt`' to '`PythonQt`.' This is how it is 'called...!' commit 20fa0e808e7e310b896575427583076fe23bbb1d Author: Alan Garny '' Date: Mon Oct 14 16:45:30 2019 +1300 Python: we 'don'\''t' need QtQuickWidgets. commit 9c8f2c25a6f300313a0735e89573c6611c55724d Author: Alan Garny '' Date: Mon Oct 14 15:58:20 2019 +1300 Python: deleted '`src/plugins/thirdParty/Python/cmake/FindSQLite3.cmake`.' Indeed, a similar file is now part of CMake '(as' of version 3.14, which is the minimum version of CMake that we need to build 'OpenCOR).' commit 2ad119399e4a6ee6f3c2d23ec955d4ac2ca2709f Author: Alan Garny '' Date: Mon Oct 14 14:56:26 2019 +1300 Python: renamed a couple of plugins. - '`src/plugins/miscellaneous/Python`' to '`src/plugins/miscellaneous/PythonShell`;' and - '`src/plugins/thirdParty/PythonLibrary`' to '`src/plugins/thirdParty/Python`.' commit 4b06c46ffd2cd2e7f538a516d375b7227cdd3430 Author: Alan Garny '' Date: Mon Oct 14 12:26:11 2019 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit 4f53bd09eca4bc726013990d16086bb72949b97f. Oops, we indeed need to do this before copying the file 'over!' commit 607f2282aa5b0ba5665a2ff4fa611bac7aaf1741 Author: Alan Garny '' Date: Mon Oct 14 12:24:15 2019 +1300 Python: renamed a couple of plugins. - '`src/plugins/miscellaneous/Python`' to '`src/plugins/miscellaneous/PythonShell`;' and - '`src/plugins/thirdParty/PythonLibrary`' to '`src/plugins/thirdParty/Python`.' commit 224b0b1b6f1385257e99c56cb4340ac1434d7249 Author: Alan Garny '' Date: Mon Oct 14 11:29:58 2019 +1300 Python: renamed '`USE_PREBUILT_PYTHON_LIBRARY_PACKAGE`' to '`USE_PREBUILT_PYTHON_PACKAGE`.' commit c87b9f84db5aaf2ac1ff748fd2df02e04beec582 Author: Alan Garny '' Date: Mon Oct 14 11:22:58 2019 +1300 Python: use the Python CMake build system available under the OpenCOR organisation. commit 4f53bd09eca4bc726013990d16086bb72949b97f Author: Alan Garny '' Date: Mon Oct 14 10:11:42 2019 +1300 Some minor cleaning up. commit 8be9b60ba2874fe06269d7369a9a0755105670f6 Merge: 8860cec95 aeccb6986 Author: Alan Garny '' Date: Fri Oct 11 20:37:51 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin. commit aeccb6986e4fe93fba978455c3a3d75adc9ecc6f Merge: 9507a3c3d ca3514eb9 Author: Alan Garny '' Date: Fri Oct 11 20:23:08 2019 +1300 SED-ML: some refactoring. commit ca3514eb98c44e532219d528d66f9279fafdaeb9 Author: Alan Garny '' Date: Fri Oct 11 19:47:17 2019 +1300 SED-ML: some refactoring. This is in preparation for our support for SED-ML L1V4. commit 8860cec95c7da74fcaf79eb312e495994348a84f Merge: 7b90c94c6 9507a3c3d Author: David Brooks '' Date: Fri Oct 11 13:20:32 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit 9507a3c3d9d85ec346ad9c5bdc2bbb45683be54c Merge: c4ab91891 ba1c60a01 Author: Alan Garny '' Date: Fri Oct 11 12:41:25 2019 +1300 Simulation Experiment view: make sure that all of a 'solver'\''s' properties get saved to a SED-ML file '(closes' '#2185).' commit 7b90c94c678f9426245eff4feb809345a64bdf89 Author: David Brooks '' Date: Fri Oct 11 12:36:54 2019 +1300 Python: new '`PythonLibrary`' packages for Windows. commit ba1c60a01e0e3f42e856dfbb97d6ba28d840bf23 Author: Alan Garny '' Date: Fri Oct 11 12:10:27 2019 +1300 Slight update to our downloads and what is new pages. commit cb29d9d07c9676cef3eb45988cdce78c190fe0bf Author: David Brooks '' Date: Fri Oct 11 12:09:20 2019 +1300 Python: get backslash escaping right when checking script shebang line under Windows. commit 3f7301b50e9f7d3f0a47117bcad394c768843604 Author: Alan Garny '' Date: Fri Oct 11 12:06:16 2019 +1300 Simulation Experiment view: make sure that all of a 'solver'\''s' properties get saved to a SED-ML file '(#2185).' commit b65471f5eb1f3bf380f1ca74048e3618477d98f2 Author: Alan Garny '' Date: Fri Oct 11 09:35:16 2019 +1300 Some minor cleaning up. commit 9c609992613c09e8c0bc84a68378d6918c901c94 Author: David Brooks '' Date: Thu Oct 10 20:14:37 2019 +1300 Python: update pre-built '`PythonLibrary`' packages for Windows. commit 4aba66b9228a545e5e472fe92a4373250deec1e2 Author: David Brooks '' Date: Thu Oct 10 09:25:46 2019 +1300 Python: update pre-built '`PythonLibrary`' packages for macOS and Linux. commit c4ab91891517d6985386acb744fe745907ae3d9e Merge: 6b94e8263 23211b5bf Author: Alan Garny '' Date: Thu Oct 10 13:25:43 2019 +1300 Some minor cleaning up. commit 23211b5bf842f4faacc7ce16091b5c03e6950f64 Author: Alan Garny '' Date: Thu Oct 10 11:58:27 2019 +1300 Some minor cleaning up. commit 6b94e826339a9e24503f6cf780f1d740c6315535 Merge: 3810d6ead 7dc34b1ff Author: Alan Garny '' Date: Wed Oct 9 16:37:22 2019 +1300 Cleaning up. commit 7dc34b1ff5c868cc63740af0a3abbe7c743f9338 Author: Alan Garny '' Date: Wed Oct 9 16:16:30 2019 +1300 Some minor cleaning up. commit 011e52c226b3ac76e949c55864e14c133b7cb081 Author: Alan Garny '' Date: Wed Oct 9 15:59:42 2019 +1300 Some minor cleaning up. commit 5e475178b90eef33f513bfebdf4a4b8437c1685a Author: Alan Garny '' Date: Wed Oct 9 15:15:10 2019 +1300 Some minor cleaning up. commit 5825b30919a1bbc2ea92ea6fcfe3a9a6bcda6117 Author: Alan Garny '' Date: Wed Oct 9 14:00:50 2019 +1300 Some minor cleaning up. commit a266955a3cc14354c8343796117482f0a64ea9e5 Author: Alan Garny '' Date: Wed Oct 9 13:04:47 2019 +1300 Some minor cleaning up. commit 2df57b0cfe1b4701a39e69ece4a4bf24f3d6f9e4 Author: Alan Garny '' Date: Wed Oct 9 14:59:11 2019 +1300 GraphPanel widget: improved our tracking/restoring of colours. Note that it only make sense to retrieve our original colours if we have some graphs and that 'it'\''s' the same number as the number of graph colours that were originally tracked. Indeed, say that that you have a SED-ML file that has a couple of curves including an invalid one '(e.g.' one of the variables 'doesn'\''t' 'exist)' then it means that only graph colours will be tracked. Then, if we are to correct the SED-ML file outside of OpenCOR. To go back to OpenCOR will trigger us to reload the SED-ML file. If we do so then the number of graphs 'won'\''t' be the same as the number of graph colours, hence the test '(not' to mention that it prevents a crash because of the out-of-bound 'index!).' commit f57e6d5b11567d5f176e00f8989125750a555a5c Author: David Brooks '' Date: Wed Oct 9 14:06:47 2019 +1300 Python: allow for '`python3`' and '`python3.x`' as name of executable when setting path to Python. commit 68fe128678fd5e4c6a7af3f4102ee1424a304a08 Author: David Brooks '' Date: Tue Oct 8 11:53:57 2019 +1300 Python: tidy up build dependency code, making sure that the path to Python is set in scripts '*before*' they are used. commit 802a12aeaa2471fa4863148d8b71b4f0fa77c938 Merge: a11a82c71 1f297b8bd Author: David Brooks '' Date: Tue Oct 8 10:22:42 2019 +1300 Merge branch ''\''pythonplugin'\''' of github.com:dbrnz/opencor into pythonplugin commit a11a82c71d21ac5fe1a8df2f4890b681fd224253 Merge: 0f94a3ceb 3810d6ead Author: David Brooks '' Date: Tue Oct 8 10:22:06 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit 3810d6eadd94cfb5d1d2e8b7b65f9821e2d5fde5 Merge: f44e9f38c e693ac24f Author: Alan Garny '' Date: Tue Oct 8 09:09:00 2019 +1300 Packaging: improved error reporting when '`create_package_file`' fails '(closes' '#2175).' commit 1f297b8bdfa03d320a61a7e974114e095c4e62fe Merge: 0f94a3ceb f44e9f38c Author: Alan Garny '' Date: Mon Oct 7 19:09:20 2019 +1300 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin. commit e693ac24ff08b1e7867a766014e8c7ef1315de0d Merge: 1dd62b24a f44e9f38c Author: Alan Garny '' Date: Mon Oct 7 19:08:19 2019 +1300 Merge branch ''\''master'\''' into issue2175. commit f44e9f38ce9ad8b271afbac3babda2b549bb65bb Merge: f8774601f ac692d815 Author: Alan Garny '' Date: Mon Oct 7 19:06:47 2019 +1300 Mesa: upgraded to version 19.2.0 '(closes' '#2180).' commit ac692d81505d27a87e51f113bf011f5bb2a6e4cd Author: Alan Garny '' Date: Mon Oct 7 18:43:01 2019 +1300 Revert '"Python:' documentation builds require Python and its packages to be fully 'installed."' This reverts commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1. commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1 Author: Alan Garny '' Date: Mon Oct 7 18:39:24 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit 1bdbb856645a392d078cf8171fe6f019f8c5ae83 Author: Alan Garny '' Date: Mon Oct 7 18:31:11 2019 +1300 Slight update to our downloads page '(#2180).' commit bc7971565005d8ea5120065467dc9b5f9ee1fe33 Author: Alan Garny '' Date: Mon Oct 7 18:26:54 2019 +1300 Mesa: upgraded to version 19.2.0 '(#2180).' commit 0f94a3ceb0611107919cba0a723136b08891aae8 Merge: 2e11ac8d2 f8774601f Author: David Brooks '' Date: Mon Oct 7 10:48:07 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit 2e11ac8d2c2ab034217d61331a508dd4bfaa4bbc Author: David Brooks '' Date: Fri Oct 4 20:56:32 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit f8774601fd27d4b7fe17830533df51c0f8346c1a Merge: fd80a0b8f 44b10f41b Author: Alan Garny '' Date: Fri Oct 4 11:40:25 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file '(closes' '#2176).' commit 44b10f41bd461378e1e30cddd568927b1357bb4c Author: Alan Garny '' Date: Fri Oct 4 10:59:50 2019 +1300 Reverting part of commit 13a0ef1. Indeed, if everything works fine '(with' our copy of 'Sphinx)' then we 'shouldn'\''t' have to clean our '`ext/doc`' folder. So, the fact that we are having some problems with our copy of Sphinx means that it must be related to our packaging of Python and its 'packages?' commit 268e5efa98a9926bdece64a0008848589aef2925 Author: Alan Garny '' Date: Fri Oct 4 10:41:26 2019 +1300 Slight update to our downloads page '(#2176).' commit 60724119ea4f63c821492e59b129859cc82e032e Author: Alan Garny '' Date: Fri Oct 4 10:39:50 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file '(#2176).' This issue was that we were tracking the original settings using a 'graph'\''s' address as a key. However, when reloading a SED-ML file, that address changes since a graph gets removed and then readded. commit 949cefef9c7da5e4279555cbd704fca703545975 Author: David Brooks '' Date: Thu Oct 3 15:06:33 2019 +1300 Python: update PythonPackages for Windows debug mode. commit dfb41c1342b0e711c2bb43407709036a574dccb0 Author: David Brooks '' Date: Thu Oct 3 15:03:28 2019 +1300 Python: 'don'\''t' try to package directories that 'don'\''t' exist in Windows debug mode. commit a1b50b902c5d2fb1f6b4e7aa24bae067388e1ea5 Author: David Brooks '' Date: Thu Oct 3 15:02:34 2019 +1300 Python: only install a minimal set of packages in Windows debug mode. commit c57c9b742ede60264f9fe32f3bc97e78040f0a7b Author: David Brooks '' Date: Thu Oct 3 15:00:02 2019 +1300 Python: build Windows debug mode package for Python Qt. commit 1dd62b24a2b0bf4cc6838f08e2364769a5dd8dce Author: Alan Garny '' Date: Thu Oct 3 14:47:22 2019 +1300 Packaging: improved error reporting when '`create_package_file`' fails '(#2175).' commit fd80a0b8f8c149d20fa60566252ed5d5ed28a935 Merge: 74163c086 5d0249760 Author: Alan Garny '' Date: Thu Oct 3 13:26:40 2019 +1300 SED-ML: added support for left and right triangle symbols '(closes' '#2173).' commit 5d0249760178b8ce15dcb7a99cd23ef781d3a8ba Author: Alan Garny '' Date: Thu Oct 3 12:54:37 2019 +1300 Slight updates to our downloads and what is new pages '(#2173).' commit 8be0875ade6c1a26038dabeeda1acfdcf64e66d8 Author: Alan Garny '' Date: Thu Oct 3 12:47:24 2019 +1300 SED-ML: added support left and right triangle symbols '(#2173).' commit 8126e51458205205cfed32b3122342531e2e39e0 Author: David Brooks '' Date: Wed Oct 2 16:07:30 2019 +1300 Python: work on debug build of Python under Windows. commit 74163c0865363fe4d1074bec631fadfe683c17cb Merge: c1e2f9897 13a0ef14b Author: Alan Garny '' Date: Wed Oct 2 09:54:26 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties '(closes' '#2171).' commit 13a0ef14b6d5f5586aee421a6f9cf774d12235b7 Author: Alan Garny '' Date: Wed Oct 2 09:35:54 2019 +1300 We 'shouldn'\''t' always build our documentation afresh. Indeed, if you run '`./cleanall`' and '`./make`' then OpenCOR will build fine. However, if you rerun '`./make`' straight after that, you will be told that '`[OpenCOR]/ext/doc/user`' '(or' '`[OpenCOR]/ext/doc/developer`,' depending on which one gets built 'first)' 'doesn'\''t' appear to contain a CMakeLists.txt file. So, instead, we have to update our '`./clean`' script to always clean our '`[OpenCOR]/ext/doc`' folder. commit af6e68ddc222bc71df76162ed8d9b2b816b69343 Author: Alan Garny '' Date: Wed Oct 2 09:14:53 2019 +1300 Slight updates to our downloads and what is new pages '(#2171).' commit 3354ef343852ba4feb14a948e6e8dcf580068a3e Author: Alan Garny '' Date: Wed Oct 2 09:11:43 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties '(#2171).' commit 7a9f397a7f0ac4672d47898bffa10106aa708db7 Author: Alan Garny '' Date: Tue Oct 1 16:17:58 2019 +1300 Make Clang-Tidy happy. commit c1e2f989701f62599f30df55262825eb62993e3c Merge: d8057d800 53a979246 Author: Alan Garny '' Date: Tue Oct 1 10:27:11 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(closes' '#2165).' commit 53a979246b7c4fbba85522a59104dc942b65e19f Author: Alan Garny '' Date: Tue Oct 1 10:07:29 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(#2165).' commit d8057d8005bed46548c22f260353f5db5a8d24bb Merge: 7064c6213 becf72ade Author: Alan Garny '' Date: Mon Sep 30 18:13:55 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(closes' '#2165).' commit becf72ade0c8ef0c979032e3938a8a42328783b8 Author: Alan Garny '' Date: Mon Sep 30 17:45:18 2019 +1300 Always build our documentation afresh. commit 22e6cc86dca0d2234ead1ba6f06b5281ec63aca0 Author: Alan Garny '' Date: Mon Sep 30 17:13:20 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(#2165).' commit fe1b1409c938eefad7c79d15ef12854747037000 Author: Alan Garny '' Date: Mon Sep 30 17:08:27 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(#2165).' commit c85a857b3c833bba5a0febf8bfef425692115f0b Merge: c71d8e62a 39b5818d1 Author: David Brooks '' Date: Mon Sep 30 14:09:13 2019 +1300 Merge branch ''\''pythonplugin'\''' of github.com:dbrnz/opencor into pythonplugin commit c71d8e62a2b0269a888c0e6083db9d1a7bd8818f Author: David Brooks '' Date: Mon Sep 30 14:04:22 2019 +1300 Python: 'don'\''t' write wide characters to standard output as each wide character is now '`NUL`' padded under Windows, presumably because Python initialisation correctly sets up Unicode output. commit e8470312a9f194553bf2b4deaaad5e3378e75e90 Merge: 80f459842 7064c6213 Author: David Brooks '' Date: Sun Sep 29 13:28:01 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit 39b5818d1f0bebd50200152b4583a24788798500 Merge: 1cf2665c1 7064c6213 Author: Alan Garny '' Date: Sat Sep 28 16:20:33 2019 +1200 Merge remote-tracking branch ''\''upstream/master'\''' into pythonplugin commit 1cf2665c1c47c7239e48058062faff4b3d45dcdc Author: Alan Garny '' Date: Sat Sep 28 16:17:00 2019 +1200 Some minor cleaning up. commit 7064c62130274d4bf2398dfae14943549138074e Merge: 0ef494a7f 06fec5909 Author: Alan Garny '' Date: Sat Sep 28 16:08:11 2019 +1200 Windows: prevent '`clean[all].bat`' from deleting '`.gitignore`' if it is not hidden '(closes' '#2167).' commit 06fec5909378e8fd0b6eaae35b0858b81bade57e Author: Alan Garny '' Date: Sat Sep 28 15:36:19 2019 +1200 Windows: prevent '`clean[all].bat`' from deleting '`.gitignore`' if it is not hidden '(#2167).' commit 80f459842654395a5612a989e51e33ed0ed60662 Author: David Brooks '' Date: Fri Sep 27 20:28:40 2019 +1200 Python: remove debugging code. commit 22ba2c2f129446cfb00d3261fca41033e5108a63 Author: David Brooks '' Date: Fri Sep 27 20:26:45 2019 +1200 Python: for Windows use 'PythonQt'\''s' pre-built debug mode plugin. commit 74993e6f08e54c2ca91e2666055a127b7d696da4 Merge: aacc4fbc9 0ef494a7f Author: David Brooks '' Date: Fri Sep 27 19:32:04 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 0ef494a7f4e0f493d6dbe5cea8b1c68589f57b02 Merge: c468fc010 330ad7aad Author: Alan Garny '' Date: Fri Sep 27 18:33:43 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(closes' '#2165).' commit 330ad7aadce8fdeff724543c3f0431188ee78095 Author: Alan Garny '' Date: Fri Sep 27 14:51:24 2019 +1200 Some minor cleaning up. commit f7245a5b1e146aee28605277605515c18c645126 Author: Alan Garny '' Date: Fri Sep 27 14:50:05 2019 +1200 Some minor cleaning up. commit 870b1822c0034f135777b798ccbc7697800d6aa7 Author: Alan Garny '' Date: Fri Sep 27 14:37:41 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS '(#2165).' We are ignoring any previous version of Qt '(because' of that break between Qt 5.12.4 and Qt '5.12.5).' commit aacc4fbc9ce85c007807213f500770d6fc6f58e7 Author: David Brooks '' Date: Fri Sep 27 14:27:14 2019 +1200 Python: revert to using the '`official`' documentation sources. commit ade7d61b5ab35aece442c45fe2b46d1206f3fd21 Author: David Brooks '' Date: Fri Sep 27 14:17:02 2019 +1200 Python: reinstate build of developer documentation that was excluded for debugging CI builds. commit cc6363e49c101b9e5d93809ecd47513a91d42fa0 Author: David Brooks '' Date: Fri Sep 27 14:11:44 2019 +1200 Python: only use the debug PythonQt library if we are building it, presumably for debugging. commit 5b72949fecad2d57e72ae8e62adc9565bd70ec10 Author: Alan Garny '' Date: Fri Sep 27 14:06:04 2019 +1200 Some minor cleaning up. commit 99db190d5aeef7e275a54a1f94075c32dfe5c2ff Author: David Brooks '' Date: Fri Sep 27 12:57:10 2019 +1200 Python: actually build the '`SAMPLE`' and '`TEST`' plugins. commit fb37f1dcaae9f849b9f82a660039cfc3c9d551e6 Author: David Brooks '' Date: Thu Sep 26 19:39:59 2019 +1200 Python: update CLI tests for Python plugins. commit 6b006fac18d81e4cbf8828474f2ed586eb3c376f Author: David Brooks '' Date: Thu Sep 26 19:38:08 2019 +1200 Python: use a better name for Python shell plugin. commit 646b7dd6bf565b26d2ea1bd64e7c1156ce86375c Merge: cdefe735b c468fc010 Author: David Brooks '' Date: Thu Sep 26 15:45:54 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit c468fc0101e3c99a73166cf6781dc3136dc77e84 Merge: fdea64b1e 6cbf0687b Author: Alan Garny '' Date: Thu Sep 26 15:23:01 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(closes' '#2161).' commit 6cbf0687baa85cad24b95434d69848e5bf33f8d7 Author: Alan Garny '' Date: Thu Sep 26 15:05:19 2019 +1200 LLVM+Clang: make sure that we can use it on Windows '(#2161).' commit ea4a8f695ae5073d1ab92e3740db29a50f040dcc Author: Alan Garny '' Date: Thu Sep 26 14:44:19 2019 +1200 Core: renamed the '`DummyMessageHandler`' class in our MathML tests. Indeed, there used to be two '`DummyMessageHandler`' classes. One in our MathML tests and one in our Core CLI utilities, and the compiler now '(!?)' complains about it on macOS. commit cdefe735b2f866b3fa9af2a30eace17de9e550ed Author: David Brooks '' Date: Thu Sep 26 13:09:05 2019 +1200 Python: more debugging. commit dee20376988be3e0bf81255b184b161de974bf7c Author: Alan Garny '' Date: Thu Sep 26 11:35:11 2019 +1200 Slight update to our downloads page '(#2161).' commit 3b7abbcdab99066111551003f372d911ddd117b8 Author: Alan Garny '' Date: Thu Sep 26 11:30:54 2019 +1200 Revert '"Only' build 'LLVM+Clang."' This reverts commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab. commit 1ed0f60fa0503f57374c0f821897231f21b84f5e Author: Alan Garny '' Date: Thu Sep 26 11:30:48 2019 +1200 LLVM+Clang: binaries for version 9.0.0 '(#2161).' commit 268c6d0bf3acbe26752fd66785e1242804eb0509 Author: David Brooks '' Date: Thu Sep 26 10:16:16 2019 +1200 Use our documentation fork for testing... commit 378ab3e097cc9cd9dc8627cf7f50e1ac58b520d0 Author: David Brooks '' Date: Thu Sep 26 10:15:28 2019 +1200 Python: only build documentation if we have a pre-built Python. commit 5db59d52b70787c4212927ae873744e902dda105 Author: Alan Garny '' Date: Thu Sep 26 07:29:48 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit abea9a9ac86b17b847510002f45773e4158912d0 Author: Alan Garny '' Date: Thu Sep 26 07:01:10 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit 3f8c0ef65cdbe4adde3c057ea01f6ab68348edb8 Author: Alan Garny '' Date: Thu Sep 26 06:37:05 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit 39b90145d356e468efd8801e1df259b1ba590723 Author: Alan Garny '' Date: Wed Sep 25 21:13:01 2019 +1200 LLVM+Clang: ignore a warning on Windows '(#2161).' commit be74c897400994e37363e388beee2835f9a46321 Author: David Brooks '' Date: Wed Sep 25 15:06:18 2019 +1200 Python: try removing quotes when defining environment for '`SPHINX_EXECUTABLE`.' commit 3d6c26850c646491ce47c3c3698e12d490ecd65a Author: Alan Garny '' Date: Wed Sep 25 09:39:21 2019 +1200 Revert '"LLVM+Clang:' upgraded to version 9.0.0 '(#2161)."' This reverts commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3. commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3 Author: Alan Garny '' Date: Wed Sep 25 09:34:38 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit f3a911e0264079a09e32d44c442346ce819fdac9 Author: Alan Garny '' Date: Wed Sep 25 08:34:08 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit 64762d9f09adda276e0c5a07048f3466f73ff99b Author: Alan Garny '' Date: Tue Sep 24 14:44:40 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 '(#2161).' commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab Author: Alan Garny '' Date: Tue Sep 24 14:44:20 2019 +1200 Only build LLVM+Clang. commit fdea64b1ef2ba058df6c1e3be0bcf7ffb9aa28df Merge: cdf4c5b98 186aefefb Author: Alan Garny '' Date: Tue Sep 24 11:30:06 2019 +1200 Batch files / shell scripts: make sure that a directory exits before changing to it '(closes' '#2159).' commit 186aefefba369a71ee2a540e204ce64aa5b98e44 Author: Alan Garny '' Date: Mon Sep 23 19:19:00 2019 +1200 Shell scripts: make sure that a directory exits before changing to it. commit f124e79eb9d53fe9c15d35a5670f59747d96d9aa Author: Alan Garny '' Date: Mon Sep 23 19:18:30 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 0c278625020d89caa96ae270b957a706c61b639d Author: Alan Garny '' Date: Mon Sep 23 19:04:35 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 35b119b24670e6696764869b0a8533d35d823367 Author: Alan Garny '' Date: Mon Sep 23 19:00:08 2019 +1200 Some minor cleaning up. commit 7729dde8528a3f16d3a74d6fdfe9e0f574372de5 Author: David Brooks '' Date: Fri Sep 20 19:18:36 2019 +1200 Python: update Windows packages for release. commit 05d8d16b847bdaf5cd7fc96c379107d47666584c Author: David Brooks '' Date: Fri Sep 20 19:03:06 2019 +1200 Python: update notes for building PythonQt under Ubuntu. commit 2ea198d6825e3db53fed305b1194755ec2a7f761 Author: David Brooks '' Date: Fri Sep 20 18:49:22 2019 +1200 Python: 'we'\''ve' renamed the plugin that runs Python code files, so update helper scripts. commit c88ab410626f806ffab7b003b8749bf48ffe2a89 Author: David Brooks '' Date: Fri Sep 20 18:14:10 2019 +1200 Python: update Linux packages for release. commit e4653679c922f04678eab11594c8f732471818af Author: David Brooks '' Date: Fri Sep 20 15:24:52 2019 +1200 Python: remove unused code. commit baeefa40657328d060fdc4a01ff43c4f0f0ee61c Author: David Brooks '' Date: Fri Sep 20 15:18:35 2019 +1200 Python: tidy up script and shell running. commit 45aaf14b6a08fca7d8e13203e28d0c5324608886 Author: David Brooks '' Date: Fri Sep 20 15:15:53 2019 +1200 Python: we 'don'\''t' need to use '`ctkAbstractPythonManager`.' This also improves PythonQt cleanup and prevents a segmentation fault. commit 0c90f0230402b5fad8d7901b783fbb6fd18f5ce1 Author: David Brooks '' Date: Fri Sep 20 12:54:50 2019 +1200 Python: update macOS packages for release. commit 429cbf1c163fc072a5dcf157ce1f0c9874024fe2 Author: David Brooks '' Date: Fri Sep 20 12:14:01 2019 +1200 Python: tweak help text. commit de5e2d5db05ffab6362db25daf6d992619482dc0 Author: David Brooks '' Date: Fri Sep 20 11:50:25 2019 +1200 Python: use better names for library and script runner plugins. Rename '`Python`' to '`PythonLibrary`' and '`PythonRunScript`' to '`Python`.' commit 6208bedb3011c7a0047eb2316172dff942157ca2 Merge: 1975c91bc cdf4c5b98 Author: David Brooks '' Date: Thu Sep 19 21:21:26 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 1975c91bcad2a37ad07b1eb05b9f4f6312266b7a Author: David Brooks '' Date: Thu Sep 19 21:19:04 2019 +1200 Python: updated pre-built packages for Windows. commit b98514aa8bf9d45076522bb04cabf1d51484d8e6 Author: David Brooks '' Date: Thu Sep 19 21:18:13 2019 +1200 Python: PythonQt library under Windows 'doesn'\''t' have version in its name. commit e56ac6be9e7d560f1c5b7b4e03430a6896d3e9c9 Author: David Brooks '' Date: Thu Sep 19 21:17:09 2019 +1200 Python: we in fact need to use '`EXTERNAL_EXTERNAL_FILES_TARGET`' when setting '`PYTHON_DEPENDENCIES`' to prevent circular references. commit f64a645a4cb42e7a8972e516c4ab2559776f8bea Author: David Brooks '' Date: Thu Sep 19 19:31:47 2019 +1200 Python: executable is still '`python.exe`' under Windows. commit 15e8200a98083653a2d6823b047ff75869c061fc Author: David Brooks '' Date: Thu Sep 19 19:26:39 2019 +1200 Python: we provide '`zlib`,' so turn off the '`USE_BUILTIN_ZLIB`' option '(used' by 'Windows'\''' 'builds).' commit 32997016cd3fae44155e4e071fb8f8bec9926617 Author: David Brooks '' Date: Thu Sep 19 19:08:28 2019 +1200 Python: fix bad code from copy-and-paste... commit ab6c69251d78abb0be2c5dda03131734ffd71b65 Author: David Brooks '' Date: Thu Sep 19 19:06:08 2019 +1200 Python: correctly set '`PYTHON_DEPENDENCIES`' list. commit 4df570d62c111e86ed47056ba4f3edb60f647f8a Author: David Brooks '' Date: Mon Sep 16 09:06:59 2019 +1200 Python: PythonQt is now on GitHub, so base our version on it. commit c1579c0390d1a964180723cef4f7d2d3b875ede6 Author: David Brooks '' Date: Fri Sep 13 18:43:47 2019 +1200 Python: minor tidy up. commit f9e5d69c60054364da55fe21b35d19fb22d1d8fa Author: David Brooks '' Date: Fri Sep 13 18:43:22 2019 +1200 Python: improve error reporting when we 'can'\''t' create a console widget. commit cc49c634574d6a2b12f35bf6546c94cf0d75fd90 Author: David Brooks '' Date: Fri Sep 13 18:41:05 2019 +1200 Python: update our bundled packages to their latest versions. commit 89d6c33a24e89f0bdef5352ef35790faa360b118 Author: David Brooks '' Date: Fri Sep 13 18:36:26 2019 +1200 Python: make sure the resulting library is writeable. commit 8fbabdaa2cbc67f478e46adea3c59c6d4964e8c9 Author: David Brooks '' Date: Fri Sep 13 18:35:36 2019 +1200 Python: upgrade to version 3.7.4. commit f6c18716d46d106ad1fe2a0d1b33f2b8e5966304 Author: David Brooks '' Date: Fri Sep 13 18:34:22 2019 +1200 Python: use '`python3`' as the Python executable. commit 55adfff090c66aadf30475ffbe6a5f65bf2153c2 Author: David Brooks '' Date: Fri Sep 13 18:32:56 2019 +1200 Python: tidy up '`CMakeLists.txt`.' commit 5321ed98584d76aaff0a1aa47eb03e8ec844e357 Author: David Brooks '' Date: Fri Sep 13 16:03:49 2019 +1200 Python: improve how we find SQLite 3 and update Windows version. commit 4bfdeabf5e87bb3623c82f8c1364cb8c9cd4eb2f Author: David Brooks '' Date: Fri Sep 13 15:32:30 2019 +1200 Python: use '`python`' as the command to either run a script or provide an interactive shell in the '`PythonRunScript`' plugin. commit 6ada9880168871a5280aab133a5cb71ca6e965ef Author: David Brooks '' Date: Fri Sep 13 15:30:28 2019 +1200 Python: the Python library plugin has to be built and installed '**before**' code that uses our Python interface. commit 43866aab8bd4bdb9edaa63bc2a2cd3bcdab32736 Author: David Brooks '' Date: Fri Sep 13 15:27:11 2019 +1200 Tidy up: remove redundant test. commit 1dbc57c74ae47267161b3d992e63529570b56342 Author: David Brooks '' Date: Fri Sep 13 13:15:47 2019 +1200 Python: We 'can'\''t' use '`;`' as a list separator with '`ExternalProject_Add`.' commit 4f378c619e29c6ddcb8469edccc2c8d8db4f3c65 Author: David Brooks '' Date: Fri Sep 13 11:59:45 2019 +1200 Python: initialise '`sys.argv`.' commit 33587b6c1f84b9bd5d071ee0660d2e8e341d851c Author: David Brooks '' Date: Fri Sep 13 11:57:44 2019 +1200 Python: use interface begin/end wrappers. commit 9e6106a85002f5199d6e04a308e507b1cf9c73c9 Author: David Brooks '' Date: Fri Sep 13 11:55:31 2019 +1200 Python: initialise simulation and data store class members. commit 260a353fa56036f6a71dcf41b84886d2b0edb047 Author: David Brooks '' Date: Fri Sep 13 11:53:32 2019 +1200 Python: '`DataStoreVariables`' has to be a class for automatic PythonQt wrapper. commit cdf4c5b98426d00b917054d851ffce4f60970fa5 Merge: cbeb33fb0 f55ff467b Author: Alan Garny '' Date: Thu Sep 12 11:10:11 2019 +1200 OpenSSL: upgraded to version 1.1.1d '(closes' '#2157).' commit f55ff467bf4142db4516274c87ff90684a868dd6 Author: Alan Garny '' Date: Thu Sep 12 10:49:31 2019 +1200 Slight update to our downloads page '(#2157).' commit 66860afcb8b1b54ce9d42c4caa338a1955be2ae9 Author: Alan Garny '' Date: Thu Sep 12 10:48:10 2019 +1200 Slight update to our what is new page. commit 7553e4d309561da9e12c9ba1c544ab3292ce443c Author: Alan Garny '' Date: Thu Sep 12 10:45:51 2019 +1200 OpenSSL: binaries for version 1.1.1d '(#2157).' commit a4614911fafb2792fb9f9bec3149b6b9c5c848f0 Author: Alan Garny '' Date: Thu Sep 12 10:36:23 2019 +1200 Revert '"Only' build 'OpenSSL."' This reverts commit cf420ec40fee9d47f5d607421617e5fde95d9a92. commit 633c8c997c5d73b2602f9315098e87ddcf871d2b Author: Alan Garny '' Date: Thu Sep 12 10:18:34 2019 +1200 OpenSSL: upgraded to version 1.1.1d '(#2157).' commit cf420ec40fee9d47f5d607421617e5fde95d9a92 Author: Alan Garny '' Date: Thu Sep 12 10:13:35 2019 +1200 Only build OpenSSL. commit cbeb33fb08c5360a6fc140116b8274e8502d9f6c Merge: c6af1c3c7 c296e2a75 Author: Alan Garny '' Date: Mon Sep 9 17:23:58 2019 +1200 New snapshot. commit c296e2a7559ba4f758903d526887860cfc53144b Author: Alan Garny '' Date: Mon Sep 9 16:41:41 2019 +1200 New snapshot. commit c6af1c3c72d80e47b3bccff508f2b14e1949526b Merge: 425ef9e97 84ea7cfe6 Author: Alan Garny '' Date: Mon Sep 9 16:36:42 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog '(closes' '#2154).' commit 84ea7cfe626c380f8441fe07dbe3f6138e705af0 Author: Alan Garny '' Date: Mon Sep 9 16:17:01 2019 +1200 Slight update to our downloads page '(#2154).' commit e6a54b02f2f04f09c36456910f33b3a43bc801bf Author: Alan Garny '' Date: Mon Sep 9 16:16:49 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog '(#2154).' commit 425ef9e97a32a892630a6c9aca414a1df19401ce Merge: 3465c7499 c6214ec15 Author: Alan Garny '' Date: Tue Sep 3 11:20:00 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 '(closes' '#2147).' commit c6214ec1589f715a70621170d196cd8371b1edda Author: Alan Garny '' Date: Tue Sep 3 10:59:12 2019 +1200 Revert '"Only' build 'LLVM+Clang."' This reverts commit 7dc102ac1f1882cd21649f72f5b701412b91f800. commit c1db926578efe3af51119c43fbddaaab8de4999a Author: Alan Garny '' Date: Tue Sep 3 10:57:13 2019 +1200 LLVM+Clang: binaries for version 8.0.1 '(#2147).' commit 40564a739964e6aba57f75ed6904a074ce1375f1 Author: Alan Garny '' Date: Tue Sep 3 09:26:37 2019 +1200 Slight update to our downloads page '(#2147).' commit 9199e2bd6abb6025e5e32c4abe86b4e2930703a5 Author: Alan Garny '' Date: Mon Sep 2 16:13:56 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 '(#2147).' commit 7dc102ac1f1882cd21649f72f5b701412b91f800 Author: Alan Garny '' Date: Mon Sep 2 16:13:07 2019 +1200 Only build LLVM+Clang. commit 3465c74990df6d98079bb36f6676ed60a60ec628 Merge: 4fcf1e5ac 481175ffd Author: Alan Garny '' Date: Mon Sep 2 15:24:23 2019 +1200 libgit2: upgraded to version 0.28.3 '(closes' '#2148).' commit 481175ffd129bc9f2dacd4827c432b342502a315 Author: Alan Garny '' Date: Mon Sep 2 15:03:15 2019 +1200 Slight update to our previous snapshots page. commit e1825c513d14ea1d9a225f2353ac91ff904b45b2 Author: Alan Garny '' Date: Mon Sep 2 15:01:32 2019 +1200 Slight update to our downloads page '(#2148).' commit 384f24b7c700beac08d4c3fd3adf0b0be479e25e Merge: 9ea124627 4fcf1e5ac Author: Alan Garny '' Date: Mon Sep 2 15:00:13 2019 +1200 Merge branch ''\''master'\''' into issue2148. commit 9ea124627bcd41a6bdce657c471df260e323a722 Author: Alan Garny '' Date: Mon Sep 2 14:57:35 2019 +1200 Revert '"Only' build 'libgit2."' This reverts commit b49218831835512cca4315ff25a6a475fe10a6ff. commit 885eb8a458f97d74fe0743b4044f682775a1337d Author: Alan Garny '' Date: Mon Sep 2 14:56:55 2019 +1200 libgit2: binaries for version 0.28.3 '(#2148).' commit 86a20c9d284851a8afec721aef876b3564d44834 Author: Alan Garny '' Date: Mon Sep 2 14:48:56 2019 +1200 libgit2: upgraded to version 0.28.3 '(#2148).' commit b49218831835512cca4315ff25a6a475fe10a6ff Author: Alan Garny '' Date: Mon Sep 2 14:48:43 2019 +1200 Only build libgit2. commit 4fcf1e5ac820b524b85ffc476ac3e6f40487df01 Merge: e28de3dc9 c158c9de7 Author: Alan Garny '' Date: Mon Sep 2 14:38:55 2019 +1200 Mesa: upgraded to version 19.1.5 '(closes' '#2149).' commit c158c9de75390b79ac34f05a298346ab9d3ce15a Author: Alan Garny '' Date: Mon Sep 2 14:02:10 2019 +1200 Slight updates to our downloads pages '(#2149).' commit 1dbc5bc82b451854061a420a7fd7e4acb8edd2de Author: Alan Garny '' Date: Mon Sep 2 13:57:52 2019 +1200 Mesa: binary for version 19.1.5 '(#2149).' commit 1492ca57b176a1664463cc08c8a7ac4a8d10835a Author: Alan Garny '' Date: Mon Sep 2 13:57:22 2019 +1200 Revert '"Only' build the Mesa 'library."' This reverts commit 45060622b2df46b35bffb11a46d7e22055ade35c. commit 45060622b2df46b35bffb11a46d7e22055ade35c Author: Alan Garny '' Date: Mon Sep 2 13:53:27 2019 +1200 Only build the Mesa library. commit 67e914c73188ed5c951422d5fc0d7b980859c567 Author: Alan Garny '' Date: Mon Sep 2 13:52:29 2019 +1200 Mesa: upgraded to version 19.1.5 '(#2149).' commit e4392b597b4a56cd3f3cb1d67aa49c757b3806df Author: David Brooks '' Date: Thu Aug 22 17:41:51 2019 +1200 Update pre-built PythonPackages plugin for Windows. commit 8cdf652d6e3ac9bea468c8037bdc4c3a42fc54e4 Author: David Brooks '' Date: Thu Aug 22 15:53:23 2019 +1200 Make sure we install into the 'plugin'\''s' '`site-packages`' directory. commit ea34e38a010a0e7b121f268634e34032ede1eceb Author: David Brooks '' Date: Thu Aug 22 15:52:37 2019 +1200 Use the top-level '`ext`' directory to build packages. commit 7afffe1745e971a51f3df33142894f2dcb570041 Author: David Brooks '' Date: Thu Aug 22 15:52:01 2019 +1200 Directly clean/make '`site-packages`' directory using 'CMake'\''s' '`file`' command '(using' the external command under 'Windows'\''' 'doesn'\''t' always 'work).' commit 1815f82b6f56a767d6c52ddd40be4a5e9ec7ff31 Author: David Brooks '' Date: Thu Aug 22 15:50:08 2019 +1200 Remove unused code. commit 8d9ac403af9e7f425aeeea133c206e6fb3491609 Author: David Brooks '' Date: Thu Aug 22 14:11:11 2019 +1200 Install '`pip`' only when building the Python packages plugin. This makes sure we are using our version patched for Windows '(#dbrnz/opencor/issues/29).' commit 12c84ef33d564e12de54bfd4c63b0a921733294e Author: David Brooks '' Date: Thu Aug 22 14:07:24 2019 +1200 We renamed our PythonQt repository so make sure this snapshot uses the old version. commit e33c830494750a94326e326146b8b5449512530c Author: David Brooks '' Date: Thu Dec 6 20:03:43 2018 +1300 Python: tidy up C++ code. commit ac9578ec5c7640b26caff85bcd4acda85fcac4e4 Merge: 1d5c28fe4 e28de3dc9 Author: David Brooks '' Date: Sat Jul 27 10:13:48 2019 -0700 Merge branch ''\''master'\''' into pythonplugin commit e28de3dc95fec03318f0d0a1ef226eaf2fbf98c8 Merge: 2221ca317 0f4f2d6f6 Author: Alan Garny '' Date: Fri Jul 19 11:07:51 2019 +0200 New snapshot. commit 0f4f2d6f6400de091836e5fd23f2191f5b4e5d99 Author: Alan Garny '' Date: Fri Jul 19 10:43:16 2019 +0200 New snapshot. commit 2221ca317f8b66c28c8799b8bbb31ed1a78f0fa6 Merge: 0bef1c058 50c5427b3 Author: Alan Garny '' Date: Fri Jul 19 10:41:25 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables '(closes' '#2139).' commit 50c5427b3e2c78fe8efe063686a7d041ea580da2 Author: Alan Garny '' Date: Fri Jul 19 10:17:51 2019 +0200 Slight updates to our what is new and downloads pages '(#2139).' commit 8916b0dd3f8c272cbf79fd2b56c687db6accfed5 Author: Alan Garny '' Date: Fri Jul 19 10:14:38 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables '(#2139).' commit 0bef1c058d4051bbe7b51b70e3dc259290224be9 Merge: a446104ec 72d291c85 Author: Alan Garny '' Date: Fri Jul 19 07:30:58 2019 +0200 OpenSSL: upgraded to version 1.1.1 LTS '(#1801).' @dbrnz, as you can see, we were finally '(!!)' able to upgrade to OpenSSL 1.1.1. We had no choice since we were having TLS initialisation issues on Windows, probably due to Qt 5.12.4 now relying on OpenSSL 1.1.1 while we were using OpenSSL 1.0.2. Indeed, although we use our own copy of OpenSSL, I guess there are some aspects of Qt that we use that rely on whatever version of OpenSSL that Qt uses. Anyway, it all seems to be working fine now, i.e. no TLS initialisation error anymore. commit 72d291c85a2407ffaada71399406eafa9d6d3be3 Author: Alan Garny '' Date: Fri Jul 19 00:10:32 2019 +0200 Slight update to our downloads page '(#1801).' commit d025cdc3e31940d6f05003f6cb252876eaea05e9 Author: Alan Garny '' Date: Thu Jul 18 23:56:51 2019 +0200 Updated the libgit2 binaries now that we use OpenSSL 1.1.1c '(#1801).' commit 7e78e670743978e0382d902c762cd2b5971dcd21 Author: Alan Garny '' Date: Thu Jul 18 23:56:25 2019 +0200 OpenSSL: binaries for version 1.1.1c '(#1801).' commit ca18468ab1d2bc85cf5c95b439312d379597fb22 Author: Alan Garny '' Date: Thu Jul 18 23:40:34 2019 +0200 Revert '"Build' libgit2 and OpenSSL '(#1801)."' This reverts commit bf7714b007141829afb77abf186587a9f79e3f12. commit 01dafe26078145bcda128d0452436824d9424aa6 Merge: bf7714b00 a446104ec Author: Alan Garny '' Date: Thu Jul 18 23:02:50 2019 +0200 Merge branch ''\''master'\''' into issue1801. commit a446104ecf131523b3ab13ea52c588b37c22e0d7 Merge: c06a366c2 a98905559 Author: Alan Garny '' Date: Thu Jul 18 23:02:07 2019 +0200 Make sure that we have a view before trying to import a file using 'OpenCOR'\''s' URI scheme '(closes' '#2140).' commit a989055598e6437997f2cd6ad0bc356a686defc4 Author: Alan Garny '' Date: Thu Jul 18 22:39:48 2019 +0200 Slight updates to our downloads pages '(#2140).' commit de37455882d74ec06eff63bd8a7d2e2efda6cbd5 Author: Alan Garny '' Date: Thu Jul 18 22:35:37 2019 +0200 Make sure that we have a view before trying to import a file '(#2140).' commit 7f84de2e2f23a19443d124364b87c7d9970f914a Author: Alan Garny '' Date: Thu Jul 18 22:34:10 2019 +0200 Some minor cleaning up. commit 81f99029837cbef7022c371e6b5669eec47ada06 Author: Alan Garny '' Date: Thu Jul 18 22:33:21 2019 +0200 Some minor cleaning up. commit 26250713e49c1c11ccee6640d54e65cd10cde5cb Author: Alan Garny '' Date: Thu Jul 18 22:33:13 2019 +0200 Some minor cleaning up. commit bf7714b007141829afb77abf186587a9f79e3f12 Author: Alan Garny '' Date: Thu Jul 18 15:43:58 2019 +0200 Build libgit2 and OpenSSL '(#1801).' commit 946b9bab7a18ab87070f072fbdd4e0d4feb88cf4 Author: Alan Garny '' Date: Thu Jul 18 15:39:07 2019 +0200 OpenSSL: upgraded to version 1.1.1c '(#1801).' commit 7d86a1c5b0cd0ab59d7923ded904588012cd56c8 Merge: 27ef2ecc6 c06a366c2 Author: Alan Garny '' Date: Fri Jun 28 11:15:01 2019 +1200 Merge branch ''\''master'\''' into issue1801. commit 27ef2ecc6e2a954524b9a9f61bca1f531efb97e4 Author: Alan Garny '' Date: Fri Jun 28 11:13:43 2019 +1200 Merge branch ''\''master'\''' into issue1801. commit c06a366c2f1e691233f4b027a57a0f11fa316b50 Merge: ef7a9d69e 9b9fc1e17 Author: Alan Garny '' Date: Thu Jun 27 19:09:22 2019 +1200 New snapshot. commit 9b9fc1e17ded8007d99ca7c5547b4e01a67b78a3 Author: Alan Garny '' Date: Thu Jun 27 18:32:36 2019 +1200 New snapshot. commit ef7a9d69e1549297371e183493c87f11d981c9f8 Merge: ebcba3b58 3d94e5501 Author: Alan Garny '' Date: Thu Jun 27 18:31:37 2019 +1200 QScintilla: upgraded to version 2.11.2 '(closes' '#2131).' commit 3d94e5501cac476955803cf6d3a8910496ffe774 Author: Alan Garny '' Date: Thu Jun 27 18:10:45 2019 +1200 Slight update to our downloads page '(#2131).' commit e3c32b328d11b91487edebc2912fc9d774d3425e Author: Alan Garny '' Date: Thu Jun 27 18:09:31 2019 +1200 Revert '"Only' build QScintilla '(#2131)."' This reverts commit 65918833cb4ed7fe16c18072c7601474bb39ff08. commit be31b1b45e56a922bdaa5902c59679a93cba3569 Author: Alan Garny '' Date: Thu Jun 27 18:08:35 2019 +1200 libgit2: binaries for version 2.11.2 '(#2131).' commit 622e5573a0bf05152c6ef31b1350c75b313039f6 Merge: 6d739dab4 ebcba3b58 Author: Alan Garny '' Date: Thu Jun 27 17:52:54 2019 +1200 Merge branch ''\''master'\''' into issue2131. commit ebcba3b588cc2d694e02b7e07024ea192abda6cc Merge: 3d90d0908 d19a7d9ba Author: Alan Garny '' Date: Thu Jun 27 17:52:04 2019 +1200 libgit2: upgraded to version 0.28.2 '(closes' '#2123).' commit 6d739dab4bd7a44919619b2eefdf9649aa0c2295 Author: Alan Garny '' Date: Thu Jun 27 17:44:26 2019 +1200 QScintilla: upgraded to version 2.11.2 '(#2131).' commit 65918833cb4ed7fe16c18072c7601474bb39ff08 Author: Alan Garny '' Date: Thu Jun 27 17:43:14 2019 +1200 Only build QScintilla '(#2131).' commit d19a7d9baa04998631134186834bd1a0a2d65b22 Author: Alan Garny '' Date: Thu Jun 27 17:33:09 2019 +1200 Slight update to our downloads page '(#2123).' commit 67889b82994fee758d67de6dedb8930a1c80cb5f Author: Alan Garny '' Date: Thu Jun 27 17:31:48 2019 +1200 libgit2: binaries for version 0.28.2 '(#2123).' commit adb7e6b2602cc778ce6a1cb4527b2600ececb3e3 Author: Alan Garny '' Date: Thu Jun 27 17:28:43 2019 +1200 Revert '"Only' build libgit2 '(#2123)."' This reverts commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e. commit b4ac240e57ab2970d58a7de0d630a141c967989b Author: Alan Garny '' Date: Thu Jun 27 17:24:08 2019 +1200 libgit2: upgraded to version 0.28.2 '(#2123).' commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e Author: Alan Garny '' Date: Thu Jun 27 17:22:49 2019 +1200 Only build libgit2 '(#2123).' commit 3d90d09083440f519395d182c6d49326c9384c48 Merge: 377b532b8 321e1f2e6 Author: Alan Garny '' Date: Thu Jun 27 17:02:21 2019 +1200 Mesa: upgraded to version 19.1.1 '(closes' '#2124).' commit 321e1f2e6229be40887bd7e64715176626f074df Author: Alan Garny '' Date: Thu Jun 27 16:20:46 2019 +1200 Slight update to our downloads page '(#2124).' commit 318456cf84e857edc43f50af1907ae83cb5a4258 Author: Alan Garny '' Date: Thu Jun 27 16:18:35 2019 +1200 Revert '"Only' build Mesa '(#2122)."' This reverts commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec. commit 218b177d00efeb9630142754d7504e988739d7e8 Author: Alan Garny '' Date: Thu Jun 27 16:18:27 2019 +1200 Mesa: binaries for version 19.1.1 '(#2124).' commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec Author: Alan Garny '' Date: Thu Jun 27 15:53:11 2019 +1200 Only build Mesa '(#2122).' commit d440a5e6de9651826d4b3d32b6d18a6bfffaa36b Author: Alan Garny '' Date: Thu Jun 27 15:52:54 2019 +1200 Mesa: ugpraded to version 19.1.1 '(#2122).' commit 377b532b81ea5ea83fa16c7c3e82565691c6c0b5 Merge: d617acde3 daa49a0a2 Author: Alan Garny '' Date: Thu Jun 27 15:44:40 2019 +1200 jQuery: upgraded to version 3.4.1 '(closes' '#2122).' commit daa49a0a2fef46219595f0bb66b7b7f10d38bc36 Author: Alan Garny '' Date: Thu Jun 27 15:19:44 2019 +1200 Slight update to our downloads page '(#2122).' commit 2a051661e052e45ae3280dec62655355bdcf85f4 Author: Alan Garny '' Date: Thu Jun 27 15:18:03 2019 +1200 jQuery: upgraded to version 3.4.1 '(#2122).' commit d617acde3b1a037ddf8004889674cead083b5f5a Merge: 12ab03f98 c62b3001d Author: Alan Garny '' Date: Thu Jun 27 14:24:40 2019 +1200 CMake: some minor cleaning up. commit c62b3001d9d9148a532a21d51b26f23b9eda499b Author: Alan Garny '' Date: Thu Jun 27 13:58:55 2019 +1200 CMake: some minor cleaning up. commit 2aa173facaceb38e9b48c54e3407d5f2b69fcd61 Author: Alan Garny '' Date: Thu Jun 27 12:54:19 2019 +1200 CMake: some minor cleaning up. commit cbe90a0051d8f7aca646114107c14a4d991cffa6 Author: Alan Garny '' Date: Thu Jun 27 12:45:49 2019 +1200 CMake: some minor cleaning up. commit 12ab03f9811251ac130e83fb2185c519fd01c39c Merge: a9143f522 0d36ea162 Author: Alan Garny '' Date: Thu Jun 27 11:29:11 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction '(closes' '#2125).' commit 0d36ea1626749b721ac5c8a14641e92628161999 Author: Alan Garny '' Date: Thu Jun 27 10:55:00 2019 +1200 Slight updates to our downloads and what is new pages '(#2125).' commit cdb83fcc687757e4bb8ce47891b169d428ee44b7 Author: Alan Garny '' Date: Thu Jun 27 10:47:52 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction '(#2125).' commit a9143f5223401f9c17b4f164ddda1e8cd104e075 Merge: d66ab0482 aee8e4749 Author: Alan Garny '' Date: Thu Jun 27 09:00:38 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(closes' '#2126).' commit aee8e474905e3772cdd89b2e4eae34e3ea170a44 Author: Alan Garny '' Date: Thu Jun 27 08:38:22 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(opencor#2126).' commit d66ab04829c833aea5224cbc0dc1ba4cc8077952 Merge: f0c5da665 4cdfdf266 Author: Alan Garny '' Date: Thu Jun 27 08:33:12 2019 +1200 Clang-Tidy: include 'OpenCOR'\''s' header files '(closes' '#2120).' commit 4cdfdf2668cfe813bbac9f0a126226ee00a7864a Author: Alan Garny '' Date: Wed Jun 26 18:12:19 2019 +1200 Clang-Tidy: include 'OpenCOR'\''s' header files '(#2120).' commit 6c336f7c7457727e8783d3dcaec81fc79bb42ff6 Author: Alan Garny '' Date: Wed Jun 26 16:12:21 2019 +1200 Some minor cleaning up. commit 031cc22f62d7c5a297ca39f4b533a7a2bd40d208 Author: Alan Garny '' Date: Wed Jun 26 16:05:33 2019 +1200 Make Clang-Tidy happy '(#2120).' commit b8bc1002e3432c2a4af5015e8e171d503701534a Author: Alan Garny '' Date: Wed Jun 26 16:01:49 2019 +1200 Make Clang-Tidy happy '(#2120).' commit a2430860884e8b3b6012dc13011d80b54e4c749e Author: Alan Garny '' Date: Wed Jun 26 15:57:42 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 25172b185d17f0ff89bca87cbd4a8d4abf06036c Author: Alan Garny '' Date: Wed Jun 26 15:56:09 2019 +1200 Make Clang-Tidy happy '(#2120).' commit c752c88e61f0786685a232ebae13ae6ffaa1d5e8 Author: Alan Garny '' Date: Wed Jun 26 15:50:51 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 777f9f07dbeef6b7837f97848ed249f2992c5b36 Author: Alan Garny '' Date: Wed Jun 26 15:48:20 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 6801c40ad1d823b78b6c9ffce7e79e01c4bfc6ef Author: Alan Garny '' Date: Wed Jun 26 15:46:11 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 5e95feaf032051fe6596eb6b58d974c667bb7148 Author: Alan Garny '' Date: Wed Jun 26 15:39:58 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 3fe092f28de2d7ef541269c7cb8b70b35882e902 Author: Alan Garny '' Date: Wed Jun 26 15:37:57 2019 +1200 Make Clang-Tidy happy '(#2120).' commit e30eda96ea835c1377993eed202a1fdaf4ef78f5 Author: Alan Garny '' Date: Wed Jun 26 15:31:55 2019 +1200 Make Clang-Tidy happy '(#2120).' commit efc77e8c11dfaa4562f5af6e4c1e63fd0acffd84 Author: Alan Garny '' Date: Wed Jun 26 15:28:55 2019 +1200 Some minor cleaning up. commit 16b9bf077b86cc8c7c3af64487e67dbed0bb8539 Author: Alan Garny '' Date: Wed Jun 26 15:28:46 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 4f2895292f22cf7c936c279aadeba4c9974058bb Author: Alan Garny '' Date: Wed Jun 26 14:17:24 2019 +1200 Make Clang-Tidy happy '(#2120).' Reverting a few things... commit f4587e0d4897012d3957c718a02c5f42a50ed0d1 Author: Alan Garny '' Date: Wed Jun 26 12:05:22 2019 +1200 Make Clang-Tidy happy '(#2120).' commit bd2760583a17c6a8f006b372293a000fd6c0d48f Author: Alan Garny '' Date: Wed Jun 26 11:31:41 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 5808ba3c0853bb02cc6176d0dcb35850e2f3d965 Author: Alan Garny '' Date: Wed Jun 26 11:23:59 2019 +1200 Make Clang-Tidy happy '(#2120).' commit d59678fc51f323e8f74facf5c27dead246e5fb67 Author: Alan Garny '' Date: Wed Jun 26 11:20:11 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 3281bd429d11c844e9fb56c8e4bf7946287bf0f8 Author: Alan Garny '' Date: Wed Jun 26 11:14:55 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 1d3e262d1f3a0c8241edea6ab64f45fede5d0dfb Author: Alan Garny '' Date: Wed Jun 26 11:13:35 2019 +1200 Make Clang-Tidy happy '(#2120).' commit ba129b35c3cd1631b4b14db03a5b4d983958731f Merge: ad36bfdc0 f0c5da665 Author: Alan Garny '' Date: Wed Jun 26 10:49:09 2019 +1200 Merge branch ''\''master'\''' into issue2120. commit f0c5da66510334033c0e7bbdea027367f66be5e3 Merge: 4ddf28c53 8738c816a Author: Alan Garny '' Date: Wed Jun 26 10:46:06 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(closes' '#2126).' commit 8738c816a14c74d8c269a4d0a29d17b1bc62261b Author: Alan Garny '' Date: Wed Jun 26 10:27:58 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Some minor cleaning up. commit f517d3d7cd20a6cd11fe044c27333d39926786ab Author: Alan Garny '' Date: Wed Jun 26 09:55:05 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Some minor cleaning up. commit cf7311d13d32482de4468bad2823ce8faefa819f Author: Alan Garny '' Date: Wed Jun 26 09:53:48 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Some minor cleaning up. commit ad36bfdc00e28986c6259535b6ca1ce4df23f1a7 Merge: ef1d2e088 4ddf28c53 Author: Alan Garny '' Date: Tue Jun 25 18:38:41 2019 +1200 Merge branch ''\''master'\''' into issue2120. commit ef1d2e088ad04f1673dc03850f8e000af1ee2148 Author: Alan Garny '' Date: Tue Jun 25 18:36:18 2019 +1200 Merge branch ''\''master'\''' into issue2120. commit 4ddf28c536897263f45275da4051559cc1f3d3c9 Merge: 5ceae0fe8 5c445b0e3 Author: Alan Garny '' Date: Tue Jun 25 18:25:35 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(closes' '#2126).' commit 5c445b0e34d7673c4df927c242075950426b8639 Author: Alan Garny '' Date: Tue Jun 25 17:47:34 2019 +1200 Slight update to our downloads page '(#2126).' commit 2c459d658e2cf4ae514e46f24aadb1302459f666 Author: Alan Garny '' Date: Tue Jun 25 17:38:03 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Also simplified our build process and made it more robust. commit 6d589d5633fdb30111072021aee40515da47c183 Author: Alan Garny '' Date: Tue Jun 25 17:18:05 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Also simplified our build process and made it more robust. commit cbda8f16d6bc3143834d286d8d92f2e74e77cdf8 Author: Alan Garny '' Date: Tue Jun 25 16:41:59 2019 +1200 Prebuilt third-party libraries are now installed under '[OpenCOR]/ext' '(#2126).' Also simplified our build process and made it more robust. commit e1dc04e9c3ce3cfd4590ff047707acc46ba75faa Author: Alan Garny '' Date: Tue Jun 25 16:34:34 2019 +1200 Clang-Tidy: moved a couple of .clang-tidy files to a better location. commit 46cf0267e9ce940a23a4579cfd59fcef653b5357 Author: Alan Garny '' Date: Tue Jun 25 16:24:57 2019 +1200 Some minor cleaning up. commit 2b7624c7e74fd4c4794a5f73f8de656978f5614a Author: Alan Garny '' Date: Tue Jun 25 16:22:13 2019 +1200 Some minor cleaning up. commit ecc27a32898ca0ed4315c33b2d2fcf36101d139d Author: Alan Garny '' Date: Tue Jun 25 16:19:19 2019 +1200 Some minor cleaning up. commit e57b82a7a0f282f0d29e21eb402381850f995d4d Author: Alan Garny '' Date: Tue Jun 25 12:55:17 2019 +1200 Clang-Tidy: only show issues for our header files '(#2120).' commit 6392d82f53177ff5ab7cbcc2d25506c818ce0eb6 Author: Alan Garny '' Date: Tue Jun 25 10:37:25 2019 +1200 Clang-Tidy: only show issues for our header files '(#2120).' commit 3c4f384a082242296c7e5636d30d8bd88edb002b Author: Alan Garny '' Date: Tue Jun 25 09:55:38 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 12526bb90a5e15f9f8cc176d9a6ecfcae516196e Author: Alan Garny '' Date: Tue Jun 25 09:49:48 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 835369d7cddfdf560029477c74a148bf9e23e913 Author: Alan Garny '' Date: Tue Jun 25 09:43:26 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 2789bbfc40c0d5fa904dc32e5ac99fa3494ba500 Author: Alan Garny '' Date: Tue Jun 25 09:40:49 2019 +1200 Make Clang-Tidy happy '(#2120).' commit f8b484a2a070aa53950a25f923b4966e1d87a3e1 Author: Alan Garny '' Date: Tue Jun 25 09:34:52 2019 +1200 Make Clang-Tidy happy '(#2120).' commit a65dfc285fe65ae59a5ca644bcef78b8a255a2df Author: Alan Garny '' Date: Tue Jun 25 09:25:41 2019 +1200 Make Clang-Tidy happy '(#2120).' commit ee4f7a52c451e5f28fcbf0eb34522b3547e9eb31 Author: Alan Garny '' Date: Tue Jun 25 09:22:44 2019 +1200 Make Clang-Tidy happy '(#2120).' commit fa338cea8f2c9c37fc8a0c6167278b4653a294a1 Author: Alan Garny '' Date: Tue Jun 25 09:15:59 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 34043978f8ae5a06c005da9a5003966952cbffd2 Author: Alan Garny '' Date: Mon Jun 24 13:25:07 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 18f56f2d8d5ab28270b83e4f3a05993bf14477c5 Author: Alan Garny '' Date: Mon Jun 24 12:52:22 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 23da1da835e45ad419b75e2d66f82813f61c863c Author: Alan Garny '' Date: Mon Jun 24 12:28:46 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 37e6447ff910c78a9326e42b14d3828f40ba766f Author: Alan Garny '' Date: Mon Jun 24 11:56:25 2019 +1200 Make Clang-Tidy happy '(#2120).' commit e9707afdf46afa5f16a91513ed54ac39b1609aca Author: Alan Garny '' Date: Mon Jun 24 11:52:54 2019 +1200 Make Clang-Tidy happy '(#2120).' commit 230fd914977a0398b33ea7daf38d743e31b5fee4 Author: Alan Garny '' Date: Mon Jun 24 11:48:52 2019 +1200 Clang-Tidy: we actually need a .clang-tidy file here and there '(#2120).' Indeed, to create a .clang-tidy file in our build folder, and to have src/3rdparty/QtSingleApplication/.clang-tidy and src/plugins/support/ZIPSupport/.clang-tidy is needed if we want to prevent those folders from being checked by Clang-Tidy. commit 2510f64419ebdf13605ae0befd5df621e19fb4e4 Author: Alan Garny '' Date: Mon Jun 24 11:45:02 2019 +1200 Make Clang-Tidy happy '(#2120).' commit e1f129135bbe2a4e7430712a6e78eca0826a70cc Author: Alan Garny '' Date: Mon Jun 24 10:48:22 2019 +1200 Clang-Tidy: do everything through CMake '(#2120).' Indeed, we 'can'\''t' use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders '(e.g.' build, 'ext).' So, instead, we '"hardcode"' the path for the headers that we want to see analysed. commit cf99e5499933d8e79e830f542c129f7a2765da6f Author: Alan Garny '' Date: Mon Jun 24 09:40:02 2019 +1200 scripts/genericclean: 'don'\''t' need to remove build/.clang-tidy anymore '(#2120).' Since we 'don'\''t' create a .clang-tidy file anymore. commit 23f144582ab0d4010c6438c77a85339cb9b693d5 Author: Alan Garny '' Date: Mon Jun 24 09:39:03 2019 +1200 Clang-Tidy: do everything through CMake '(#2120).' Indeed, we 'can'\''t' use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders '(e.g.' build, 'ext).' So, instead, we '"hardcode"' the path for the headers that we want to see analysed. commit ecdc8d063a3526e4906f6f446ab11aad903a85b9 Author: Alan Garny '' Date: Mon Jun 24 09:36:30 2019 +1200 Slight update to our .gitignore file '(#2120).' Now that we put our external libraries: everything is now under '[OpenCOR]/ext.' commit f0c12ee851c7d9eb30abe78589c3863e2c3a7bf4 Author: Alan Garny '' Date: Sat Jun 22 11:44:55 2019 +1200 libSEDML: use the '"official"' libSBML and libNuML variables. commit 36f2d92b3a2d9870dfad0b2bb5ce9eb0ceaadba1 Author: Alan Garny '' Date: Sat Jun 22 11:44:38 2019 +1200 libNuML: use the '"official"' libSBML variables. commit 69363a39a276bfb8db2f695c982ac84aef32c8c6 Author: Alan Garny '' Date: Sat Jun 22 11:44:11 2019 +1200 libgit2: make sure that it depends on our OpenSSL and zlib packages. commit e68a713425e868e3cfdc10d1f4b7f8620ec71515 Author: Alan Garny '' Date: Sat Jun 22 11:43:41 2019 +1200 libSBML: make sure that it depends on our zlib package. commit 3938138ad10e2bfd78fbed62be7cd7cdd5c2671d Author: Alan Garny '' Date: Sat Jun 22 11:43:14 2019 +1200 Graph panels: we 'don'\''t' need libSEDML '(!!).' commit fd82f407db9d98edc43f4d492dfd512a8a99967f Author: Alan Garny '' Date: Sat Jun 22 11:42:49 2019 +1200 Minor reordering of plugins. commit 16fb7e4ec785eb319f4cb529c692e0bbe9458cf5 Author: Alan Garny '' Date: Fri Jun 21 20:05:04 2019 +1200 External libraries: everything is now under '[OpenCOR]/ext' '(#2120).' commit 98adbdcca8ae07027a4d4430edef6b6e6a6c1dbf Author: Alan Garny '' Date: Fri Jun 21 19:26:35 2019 +1200 External libraries: everything is now under '[OpenCOR]/ext' '(#2120).' commit 9d5f849ac91a40fc029b83be553604533cb6e9a3 Author: Alan Garny '' Date: Fri Jun 21 19:06:47 2019 +1200 Slight update to our genericclean scripts '(#2120).' commit e19f3496a58f7e7fa82df75efc86a77b43b70333 Author: Alan Garny '' Date: Fri Jun 21 16:38:55 2019 +1200 External libraries: everything is now under '[OpenCOR]/ext' '(#2120).' We used to have things under, for example, '[OpenCOR]/src/plugins/thirdParty/SUNDIALS/ext,' but this makes things unnecessarily complicated for Clang-Tidy. commit a388605b3e3f848ee59e41a757f0025f0496821d Author: Alan Garny '' Date: Fri Jun 21 14:45:27 2019 +1200 Some minor cleaning up. commit 54b5ba2aaba0592e242a947c4d1396a058f07221 Author: Alan Garny '' Date: Fri Jun 21 10:46:57 2019 +1200 Some minor cleaning up. commit e7bde0a391815a37bbe2be940177f1d41fc5eaa2 Author: Alan Garny '' Date: Fri Jun 21 10:26:03 2019 +1200 Moved a couple of .clang-tidy files. commit 5ceae0fe8d9ea6b23782b79ef6cf4d9d0d2e0413 Merge: 10a189bf6 ecd21bca5 Author: Alan Garny '' Date: Tue Jun 18 15:29:47 2019 +1200 Simulation Experiment view: Fixed an issue with the plotting of simulation data being potentially '(very)' choppy '(closes' '#2118).' commit ecd21bca5cb9862a004f130c9683d286707d9705 Author: Alan Garny '' Date: Tue Jun 18 15:02:45 2019 +1200 Slight update to our downloads page '(#2118).' commit 1a8f58e7f5dd4af1e9c12b380045ad247b0e6e45 Author: Alan Garny '' Date: Tue Jun 18 14:59:23 2019 +1200 Simulation Experiment view: fixed an issue with the plotting potentially being '(very)' choppy '(#2118).' commit 10a189bf6b1f5d0f4388261e57d95238426d1512 Merge: f784b3726 fde4ab2e8 Author: Alan Garny '' Date: Tue Jun 18 14:43:28 2019 +1200 Simulation Experiment view: properly disable the '`Reset' All Model 'Parameters`' button '(closes' '#2116).' commit fde4ab2e8c6ed1f6c7f07b380b1f39c12c867979 Author: Alan Garny '' Date: Tue Jun 18 14:06:06 2019 +1200 Slight updates to our downloads pages '(#2116).' commit 23d9f7e86312db0daeba97c74e6343dbb7b8584a Author: Alan Garny '' Date: Tue Jun 18 14:02:11 2019 +1200 Simulation Experiment view: properly reset the '`Reset' All Model 'Parameters`' button '(#2116).' commit f784b37269948afd2730af737e2fad8bf06e8917 Merge: d68bbf5a9 c3c6bc1df Author: Alan Garny '' Date: Tue Jun 18 14:00:33 2019 +1200 Make Qt 5.12.4 LTS happy. commit c3c6bc1df557f30916bb09d1ea6c452a4c0ee8a1 Author: Alan Garny '' Date: Tue Jun 18 13:16:57 2019 +1200 Make Qt 5.12.4 LTS happy. commit d68bbf5a94407c96a535e41bf49428140030ef9c Merge: 613221b83 ca7bfd00e Author: Alan Garny '' Date: Mon Jun 17 19:19:52 2019 +1200 New snapshot. commit ca7bfd00eb33443f1782590a896d4f92a03a5f2f Author: Alan Garny '' Date: Mon Jun 17 19:01:44 2019 +1200 New snapshot. commit 613221b8332c94a4fbd3d94fe70d2d50b14e33af Merge: 4fd5586a3 ef101afeb Author: Alan Garny '' Date: Mon Jun 17 19:00:03 2019 +1200 Linux: support Ubuntu 19.04 by shipping libtinfo.so.5 '(closes' '#2075).' commit ef101afeb2a948cd6063ee13e4964f1bf503690c Author: Alan Garny '' Date: Mon Jun 17 18:36:29 2019 +1200 Slight update to our downloads page '(#2075).' commit 14218b36a6d14b9bbede5b0d94796ec7f6fc9580 Merge: be185066f 4fd5586a3 Author: Alan Garny '' Date: Mon Jun 17 18:30:21 2019 +1200 Merge branch ''\''master'\''' into issue2075. commit 4fd5586a3ab0cdacd9a01ab0c97f048d512cfbcd Merge: 6b152d396 b3542b08e Author: Alan Garny '' Date: Mon Jun 17 18:29:43 2019 +1200 OpenSSL: upgraded to version 1.0.2s '(closes' '#2105).' commit be185066f51b41de34a15d1d99c2f157c3847046 Author: Alan Garny '' Date: Mon Jun 17 17:28:48 2019 +1200 Linux: ship libtinfo.so.5 '(#2075).' commit b3542b08ee17e125978c3e2339ca6e0e2a995a65 Author: Alan Garny '' Date: Mon Jun 17 16:12:07 2019 +1200 Revert '"Only' build the OpenSSL package '(#2105)."' This reverts commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752. commit df4ec55d87249a5f3189614723c9ea4f1e92f86b Author: Alan Garny '' Date: Mon Jun 17 16:11:21 2019 +1200 Slight update to our downloads page '(#2105).' commit 5c9b2ab76074b161e5c7b3d23f2bdcc01fc5205e Author: Alan Garny '' Date: Mon Jun 17 16:11:10 2019 +1200 OpenSSL: binaries for version 1.0.2s '(#2105).' commit 6a93a87356e1a7d730f146a96700e73f374375d8 Author: Alan Garny '' Date: Mon Jun 17 15:48:18 2019 +1200 OpenSSL: upgraded to version 1.0.2s '(#2105).' commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752 Author: Alan Garny '' Date: Mon Jun 17 15:47:40 2019 +1200 Only build the OpenSSL package '(#2105).' commit 6b152d3969fd190b1f91f73a70ff93053a0a1cc5 Merge: cc0b9636d 952ba71a6 Author: Alan Garny '' Date: Fri Jun 14 10:10:52 2019 +1200 CellML support: improved the validation reporting of models with imports '(#2109).' commit 952ba71a667c017f527ada963fdccb18e47caf09 Author: Alan Garny '' Date: Fri Jun 14 09:41:05 2019 +1200 CellML support: improved the validation reporting of models with imports '(#2109).' commit cc0b9636d4c4391038663a552fe5856a668edd00 Merge: 0fd89bfc7 3cbc7051a Author: Alan Garny '' Date: Thu Jun 13 19:02:27 2019 +1200 CellML support: improved the validation reporting of models with imports '(closes' '#2109).' commit 3cbc7051aa8acb2cad2275e06a273b4f1ad3e7c4 Author: Alan Garny '' Date: Thu Jun 13 18:35:44 2019 +1200 Slight update to our downloads page '(#2109).' commit facd2c458122056da4a1032e4823f8beb1b0ba99 Author: Alan Garny '' Date: Thu Jun 13 18:27:46 2019 +1200 URI scheme: fixed a small problem with our new EditingView.setCursorPosition command '(#2109).' commit a33d588c3b51bc1a57840d81b6c1a6b4dcf7b1dd Author: Alan Garny '' Date: Thu Jun 13 18:12:08 2019 +1200 Some minor cleaning up. commit c1d554657e488f0de6b7d78eca926e56046077c5 Author: Alan Garny '' Date: Thu Jun 13 18:06:08 2019 +1200 CellML support: improve validation reporting of models with imports '(#2109).' commit a63fef61f3e5025e644009c5d068090d3b151fe8 Author: Alan Garny '' Date: Thu Jun 13 18:03:46 2019 +1200 Core: added a method to retrieve the current view plugin '(#2109).' commit 769bfc2b18f02f9e914aecbcc2e756c2d1b4af32 Author: Alan Garny '' Date: Thu Jun 13 16:02:51 2019 +1200 Some minor cleaning up. commit 72c84d0d94e4bc22a838f3d14971dbc969f28892 Author: Alan Garny '' Date: Thu Jun 13 15:21:01 2019 +1200 CellML support: sort CellML issues by the imported file from which they come '(if' 'any)' '(#2109).' commit c314d23c9d133f18e62982816814f3b5d81ed8ff Author: Alan Garny '' Date: Thu Jun 13 15:20:13 2019 +1200 Raw CellML view: 'don'\''t' mention anymore that an issue may be related to the current CellML file or to one of its '(in)directly' imported CellML files '(#2109).' commit ae18d144f4e5dfe4e0134799db3f8d497be99a22 Author: Alan Garny '' Date: Thu Jun 13 15:18:28 2019 +1200 Some minor cleaning up. commit 883401ca35ef3d179028f3e8c0b5c2f40e6bf80b Author: Alan Garny '' Date: Thu Jun 13 14:19:32 2019 +1200 CellML support: improve validation reporting by ignoring duplicate issues '(#2109).' commit 7a8bff9ab536820451cf0b40b8e6da0eddb200b4 Author: Alan Garny '' Date: Thu Jun 13 14:18:46 2019 +1200 Some minor cleaning up. commit 1d5c28fe4da3030e7f0972fbd128c3b593a8e102 Author: David Brooks '' Date: Tue Jun 11 16:39:04 2019 +1200 Python: fix wrong return value from '`PythonRunScriptPlugin::runScript()`' when insufficient arguments. commit c2a7f1bd0e55e78b784a8c6e4058fd3c080bc9b1 Author: David Brooks '' Date: Tue Jun 11 16:08:35 2019 +1200 Python: minor code tidy. commit bf5ea2fbe86422bdceab183561914df659afc790 Author: David Brooks '' Date: Tue Jun 11 16:08:19 2019 +1200 General: return the exit code of a CLI plugin command '(#2107).' commit a9616ffb5f53eddb36f068e3cdb5bdcdd4a9acf5 Merge: 4478cf51c 0fd89bfc7 Author: David Brooks '' Date: Tue Jun 11 15:55:52 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 0fd89bfc781d9184c105b30129e0af64248a4d16 Merge: 00c94de6f 1cc03e92c Author: Alan Garny '' Date: Tue Jun 11 15:40:13 2019 +1200 General: return the exit code of a CLI plugin command '(closes' '#2107).' commit 1cc03e92cda6209aacd950407ca69eb5698f233e Author: Alan Garny '' Date: Tue Jun 11 15:10:56 2019 +1200 Slight updates to our downloads page '(#2107).' commit fdf7ed1aef5add034b400dcbb5cb97efb5ed6cdd Author: Alan Garny '' Date: Tue Jun 11 15:07:47 2019 +1200 General: return the exit code of a CLI plugin command '(#2107).' commit 4478cf51ce7e960b5ac893444d5ef82124051c9e Author: David Brooks '' Date: Tue Jun 11 13:33:55 2019 +1200 Return '`sys.exit()`' result code from running CLI Python script '(fixes' 'dbrnz/opencor/#27).' commit d3aeb0f0edbafde8104367cd922e07fb03c172a9 Merge: 5cda8de15 00c94de6f Author: David Brooks '' Date: Tue Jun 11 10:11:22 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 00c94de6f84c9c7cccde1b56dc749de7e37448ce Merge: 9f52eab06 e14fe9346 Author: Alan Garny '' Date: Thu May 30 16:13:53 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit e14fe9346bbee876e8a2ab256a97e5536f7c38ed Author: Alan Garny '' Date: Thu May 30 15:54:41 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit eefa4157902c08c6b312235a58e840e10f6e2967 Merge: f1e260f9c 9f52eab06 Author: Alan Garny '' Date: Mon May 27 09:12:53 2019 +1200 Merge branch ''\''master'\''' into issue1801. commit 5cda8de15b311ca2ccc77203d377788b3c27466c Author: David Brooks '' Date: Fri May 24 11:52:13 2019 +1200 Python: minor tidy. commit 9f52eab06f87664f25863131d5a93956d4c5958e Merge: e1904fdd3 05bb52978 Author: Alan Garny '' Date: Fri May 24 11:52:03 2019 +1200 CMake: improved the building of our documentation '(closes' '#2103).' commit 10441fb8acf9546db5d2ccb4f1c2cb2f48dde41e Author: David Brooks '' Date: Fri May 24 11:17:08 2019 +1200 Python: work on improving 'solver'\''s' interface '(#2091).' commit 05bb529782641f72f93ed214b0bce632d5346388 Author: Alan Garny '' Date: Fri May 24 11:13:26 2019 +1200 CMake: improve the building of our documentation '(#2103).' commit 0759373bb0ac396e02499d3b177e179d98966918 Author: David Brooks '' Date: Fri May 24 10:22:40 2019 +1200 Minor tidy up. commit ffe7b7586bb426e672c98b7d60352fbddb86f1e4 Author: David Brooks '' Date: Thu May 23 20:24:14 2019 +1200 General: we no longer need to set '`QT_QPA_PLATFORM_PLUGIN_PATH`' '(#2089).' commit e2c056d2331b4251691e69f7f31fca0ba9c4dca4 Author: David Brooks '' Date: Thu May 23 19:53:11 2019 +1200 Python: enable the ability to set a 'simulation'\''s' solver and set its properties '(#2091).' commit 6ab9bd4754b9eb1ca30fcb1791f6fc8ffef1add2 Author: David Brooks '' Date: Thu May 23 19:40:16 2019 +1200 Python: fix minor typo. commit 367d392c9b04f678c5ac1a7341c7bb7834a3ef6d Author: David Brooks '' Date: Thu May 23 19:28:37 2019 +1200 Python: remove WIP SolverSupport plugin as we 'don'\''t' yet need it. commit 5383ceafd5326ed3971293ea65336d3aaeef612c Merge: 86f780905 e1904fdd3 Author: David Brooks '' Date: Thu May 23 19:05:48 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit e1904fdd3de3a12027b77c6d6097791e87bfd9d7 Merge: 694a0d624 96cc2cf92 Author: Alan Garny '' Date: Thu May 23 17:55:38 2019 +1200 Documentation: slight reformatting of our different scripts. commit 96cc2cf929c388d4d6314c0da257b8a0ee69fb6e Author: Alan Garny '' Date: Thu May 23 17:20:12 2019 +1200 Documentation: slight reformatting of our different scripts. commit 694a0d624c67a926a945a519a08bc99f50ccff5f Merge: 711a827af f2af55ad5 Author: Alan Garny '' Date: Thu May 23 16:57:12 2019 +1200 New snapshot. commit f2af55ad5824f9b5714222ef1724a1d1dcd2f805 Author: Alan Garny '' Date: Thu May 23 16:24:43 2019 +1200 New snapshot. commit 711a827afcf705e8dcee69099625cf1c6424a0dd Merge: 2c5063e30 1b1c3e510 Author: Alan Garny '' Date: Thu May 23 16:22:16 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore '(closes' '#2089)' and Help window: fixed and issue with a blank page being shown rather than the documentation itself '(closes' '#2099).' commit 1b1c3e5109ebba73a68f07608b4d598768d64e99 Author: Alan Garny '' Date: Thu May 23 15:40:16 2019 +1200 Ubuntu: prevent our binary from being considered as a shared library file on Ubuntu when using Nautilus. commit 404b83232a8a83035bfe319ff8cf4f9b6927bf91 Author: Alan Garny '' Date: Thu May 23 15:05:08 2019 +1200 Slight update to our downloads page '(#2099).' commit 598ecc8ddf62ffe65513a64c463190ed2411a8f4 Author: Alan Garny '' Date: Thu May 23 15:03:50 2019 +1200 Slight update to our downloads page '(#2089).' commit a3ac89e3ff4189e5c2ec891d095ca59876c60c6a Author: Alan Garny '' Date: Thu May 23 14:09:48 2019 +1200 CMake: use '`CMAKE_AUTORCC`.' commit c5f82f3baa5005fa1e1d653b662ec3ab6b5bfd37 Author: Alan Garny '' Date: Thu May 23 12:27:27 2019 +1200 Some minor cleaning up. commit f37c141c52020fbd6eb7e864b686e7ac5b08ce93 Author: Alan Garny '' Date: Thu May 23 10:17:16 2019 +1200 Help window: make sure that our user documentation is ready. commit 86f78090548570bb78cda68fc41b70827e7f6e58 Merge: be33eade8 2c5063e30 Author: David Brooks '' Date: Wed May 22 20:55:37 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 2cb4471a38d9d1e9aa08932e427f2edb16dbb353 Author: Alan Garny '' Date: Wed May 22 18:54:59 2019 +1200 Help window: make sure that our user documentation is ready. commit f24ad5e970b35a2d9bc5b8374eb01a74168b3ea3 Author: Alan Garny '' Date: Wed May 22 17:46:43 2019 +1200 CMake: use '`CMAKE_AUTORCC`.' commit dc722050eaf82e6a5ffb64bae77339e6d13259d4 Author: Alan Garny '' Date: Wed May 22 15:38:34 2019 +1200 Make Clang-Tidy happy. commit b98c3d05425ed393465b449ca412508c34e69563 Author: Alan Garny '' Date: Wed May 22 15:25:11 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore '(#2089).' To use 'QCoreApplication::applicationFilePath()' is not good enough, we must use 'QCoreApplication(pArgC,' 'pArgV).applicationFilePath().' commit 6d91c6a4d7517feba0f121a82975d0787be50e4b Author: Alan Garny '' Date: Wed May 22 15:07:28 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore '(#2089).' The issue is that during some Clang-Tidy related work, I merged 'initPluginsPath()' and 'initApplication()' together, but that was clearly a '(very)' bad 'move!' commit 2c5063e30615907a7e7a09b05c126d2bc12441f9 Merge: a26b8bab7 9d62a15bf Author: Alan Garny '' Date: Wed May 22 10:50:01 2019 +1200 libgit2: new binaries for version 0.28.1. commit 9d62a15bf2c227b1b9d0c84f4222352256a055c7 Author: Alan Garny '' Date: Wed May 22 10:25:36 2019 +1200 Revert '"Only' build 'libgit2."' This reverts commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe. commit 56b263dc2dd9fef4538a8b9673cf58e2739002d7 Author: Alan Garny '' Date: Wed May 22 10:25:17 2019 +1200 libgit2: new binaries for version 0.28.1. commit 14ca0751f7d519280dde8d335bc1f7504dc50b4c Author: Alan Garny '' Date: Wed May 22 10:21:15 2019 +1200 CMake: increased our minimum version required to 3.14. See the note in issue '#2088.' commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe Author: Alan Garny '' Date: Wed May 22 10:13:20 2019 +1200 Only build libgit2. commit be33eade867809c799c4043f9f0e57dcea666cb2 Author: David Brooks '' Date: Tue May 21 20:29:21 2019 +1200 Add '`SolverSupport`' plugin '(#2091).' commit a26b8bab72f6a9dc086c0b2d321d9c2bdfc00698 Merge: 40a29257c 71f9f05ba Author: Alan Garny '' Date: Tue May 21 18:46:07 2019 +1200 Issue '#2088' cleaning up. commit 71f9f05ba2a6f794d6ba6e37d2faef60c250d36b Author: Alan Garny '' Date: Tue May 21 18:26:05 2019 +1200 Slight update to our downloads page. commit 749f57be676e07f6df12118e36d58fb77676168a Author: Alan Garny '' Date: Tue May 21 18:20:30 2019 +1200 Some minor cleaning up. commit 40a29257cb36d639af3805f7c4e3814a82d10377 Merge: 0eabce350 fb643c61d Author: Alan Garny '' Date: Tue May 21 18:19:31 2019 +1200 libgit2: now only references our copy of '`zlib`' '(closes' '#2088).' commit f5fd13e6534974fffaab551187d8573b79f92ddd Merge: 3f7255a9d fb643c61d Author: David Brooks '' Date: Tue May 21 18:06:31 2019 +1200 Merge branch ''\''issue-2088'\''' into pythonplugin commit 3f7255a9d32389a724128d688e33c85bd7ba5152 Author: David Brooks '' Date: Tue May 21 18:03:07 2019 +1200 Properly initialise NLA solver when the simulation needs one '(dbrnz/opencor/#26).' commit fb643c61dd2a10b73b55916a72f35c6160af8fea Author: David Brooks '' Date: Tue May 21 17:22:30 2019 +1200 Use our version of '`libgit2`' that 'doesn'\''t' duplicate '`zlib`' libraries '(#2088).' commit 251bf80ccc78011c3ca6ea1afe56611e1cd42716 Author: David Brooks '' Date: Tue May 21 13:30:59 2019 +1200 Make sure we use our '`zlib`' when building '`libgit2`' '(#2088).' commit fae78bd4fe9ed1fd8fbaab1285982e2fd3de3412 Merge: 675898cc5 9232ad686 Author: David Brooks '' Date: Sat May 18 14:25:29 2019 +1200 Merge branch ''\''issue-2089'\''' into pythonplugin commit 9232ad68690e90f902dca3c718b960cde10e34cd Author: David Brooks '' Date: Sat May 18 14:23:03 2019 +1200 Set QT_QPA_PLATFORM_PLUGIN_PATH before running OpenCOR '(#2089).' commit 0eabce350ad15bb8f4849883ae9298be679b6c55 Merge: 88e670c8d 2e0bc8dff Author: Alan Garny '' Date: Fri May 17 19:29:44 2019 +1200 Some minor cleaning up. commit 2e0bc8dff0761ce7872fb6c4a4c4ebdf574ac235 Author: Alan Garny '' Date: Fri May 17 19:06:52 2019 +1200 Fixed a test following a change in one of our sample CellML files. commit 9e9a6c2816ec2196a6be4c0b0e4c2e0b2890b630 Author: Alan Garny '' Date: Fri May 17 18:49:26 2019 +1200 Some minor cleaning up. commit 675898cc596f38ae18419215f367f6fc49074d68 Merge: 3405d0311 944604768 Author: David Brooks '' Date: Fri May 17 15:23:10 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 944604768276ed815c3cfabed98dff3883e36491 Merge: 0ab973ed7 88e670c8d Author: David Brooks '' Date: Fri May 17 15:12:50 2019 +1200 Merge remote-tracking branch ''\''upstream/master'\''' commit 88e670c8d2099075d059b1ffe58c379b0c3a44db Merge: afada809a e0c489985 Author: Alan Garny '' Date: Fri May 17 14:40:14 2019 +1200 Simulation support: allow a remote SED-ML file to be run headless '(closes' '#2085).' commit 0ab973ed78f8a575775b65e0f6feed27ad128445 Merge: afada809a e0c489985 Author: David Brooks '' Date: Fri May 17 13:00:52 2019 +1200 Merge branch ''\''agarny-issue2085'\''' commit e0c489985c43c72c177682bac43a674d204e9976 Author: Alan Garny '' Date: Fri May 17 12:32:11 2019 +1200 Slight update to our what is new page '(#2085).' commit 411bb845fecf7747e17342c177730afb772a33d2 Author: Alan Garny '' Date: Fri May 17 12:29:02 2019 +1200 Slight updates to our downloads pages '(#2085).' commit 252a1b1bba1652b83f6532ebc3e6c69a2a8fce9f Author: Alan Garny '' Date: Fri May 17 12:24:31 2019 +1200 Make sure that we have a main window before trying to retrieve our central widget '(#2085).' commit 255f353f5413db49e6c3bd967939f77b409d158a Author: Alan Garny '' Date: Fri May 17 12:16:41 2019 +1200 Some minor cleaning up. commit de39c925fadab51f56629cbc341ad7261c85b1c8 Author: Alan Garny '' Date: Fri May 17 12:05:57 2019 +1200 CellML support: 'don'\''t' ask whether we have a busy widget '(#2085).' commit b5494a56d15cb5097d5c7ece36f438afec6b1915 Author: Alan Garny '' Date: Fri May 17 11:57:56 2019 +1200 Some minor cleaning up. commit 4f80f9b8edd01afea7b918baa6fe3c65604bd545 Author: Alan Garny '' Date: Fri May 17 11:55:29 2019 +1200 Replaced calls to '`Core::centralWidget()->xxxBusyWidget()`' with called to '`Core::xxxCentralBusyWidget()`' '(#2085).' commit ff5b8f8014acfeeccf948d00257495441fa481c9 Author: Alan Garny '' Date: Fri May 17 11:47:07 2019 +1200 Some minor cleaning up. commit 1fd378dcd6f4b482484f14a80f45ec341a1bdcdd Author: Alan Garny '' Date: Fri May 17 11:23:09 2019 +1200 Some minor cleaning up. commit 3405d0311b312dc9b30a8ea547d441a2700a98f9 Author: David Brooks '' Date: Thu May 16 22:24:02 2019 +1200 Python: fix typo... commit 17ebcd44d9252181d48f48254b40dc96390b278d Author: David Brooks '' Date: Thu May 16 21:24:28 2019 +1200 Python: tweaks to '`run_python`' script for Windows. commit 02d010bfd13a317e18b2c521fa2cb95e713c9e7a Author: David Brooks '' Date: Thu May 16 19:08:06 2019 +1200 Python: update PythonPackages plugin for Linux and Windows. commit 0fa9218af2ed6a31159bf1f599468949e21f80a5 Author: David Brooks '' Date: Thu May 16 19:07:33 2019 +1200 Python: provide '`VBS`' scripts for Jupyter under Windows and tidy CMake install code. commit 95bd59fe5a077ac769a57bafb6f6b2ddcc9c756e Author: David Brooks '' Date: Thu May 16 09:29:21 2019 +1200 Python: minor tidy. commit 446f4f4f216d9c1604b87b10f7fa194e15e1f59e Author: David Brooks '' Date: Thu May 16 09:28:41 2019 +1200 Python: 'don'\''t' try to get values from an uninitialised data store. commit ac725ec6d163e2131d4e83aa718a84a276f7e239 Author: David Brooks '' Date: Thu May 16 09:27:33 2019 +1200 Python: raise exception for an invalid simulation when trying to run it, not at open time. commit bab31ac7af6ba5bec09647b78b95fc254a910e3f Author: David Brooks '' Date: Thu May 16 08:56:00 2019 +1200 Python: use the new '`RunPythonScript`' plugin to run Python from the CLI. commit 8ff44309410b2a429a18599979785149b1512518 Author: David Brooks '' Date: Tue May 14 21:33:34 2019 +1200 Python: add '`RunPythonScript`' plugin to run a Python file from the CLI. commit dfc95a3cb555a09825076c48ee49112d7098aa2c Author: David Brooks '' Date: Tue May 14 21:32:35 2019 +1200 Python: use reworked code to initialise and run a simulation under Python. commit 57167357154e608ee23fb55f324971b8ad887781 Author: David Brooks '' Date: Tue May 14 14:06:51 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit afada809aedf898d38279370ba1f07e79260b52f Merge: 04269d194 2158c2b73 Author: Alan Garny '' Date: Tue May 14 13:04:11 2019 +1200 Simulation support: improved our checking of issues. commit 2158c2b7349ff4b44e52b8b1446a69e09695be6b Author: Alan Garny '' Date: Tue May 14 10:59:36 2019 +1200 Simulation support: improved our checking of issues. commit 33b009d612f462a331d8d332798ef001c837773f Author: Alan Garny '' Date: Tue May 14 09:26:40 2019 +1200 Some minor cleaning up. commit 798418a276486a87f764b5870d8eb0f30e208e3b Author: David Brooks '' Date: Mon May 13 18:52:08 2019 +1200 Python: add minor comments. commit a4b59b64fb35eb65663c1a71320b86aefa2a3238 Author: David Brooks '' Date: Mon May 13 18:48:40 2019 +1200 Python: update version of '`ipykernel`.' commit b61b1bf84b598331bfe1edd92196465eab274bc8 Author: David Brooks '' Date: Mon May 13 18:37:33 2019 +1200 Python: tweak '`run_python.bat`' for Windows. commit ad576b71837bec92f67969de466cc79ba31eb1eb Author: David Brooks '' Date: Mon May 13 18:36:39 2019 +1200 Python: under Windows, the typedef for '`SimulationDataUpdatedFunction`' depends on the version of Visual Studio. commit f75f4a894595b040b4a7d17c0a599d5002ef8d86 Author: David Brooks '' Date: Mon May 13 18:27:18 2019 +1200 Python: rationalise headers to remove duplicate definition of '`SimulationDataUpdatedFunction`.' commit 498a6a2c1308e63be7c455a206c161ac4fc2d140 Author: David Brooks '' Date: Mon May 13 17:04:50 2019 +1200 Python: allow a user to query the validity of a simulation and get details of any 'issues;' 'don'\''t' try to run an invalid simulation. commit 04269d194b9fa3376bc1e4cec85cbfb52af06ece Merge: 45b51147b 0e63e8f43 Author: Alan Garny '' Date: Mon May 13 13:35:58 2019 +1200 New snapshot. commit 0e63e8f438da2c97d3b582f1b568a6807eeed7ec Author: Alan Garny '' Date: Mon May 13 13:07:34 2019 +1200 New snapshot. commit 21d92d9145abd7da47eb5675344bd12fa614da61 Author: Alan Garny '' Date: Mon May 13 13:06:19 2019 +1200 Slight updates to our downloads pages. commit 45b51147bd8738f6b7318de300551334a45aba16 Merge: 7c290c590 762546bec Author: Alan Garny '' Date: Mon May 13 12:54:27 2019 +1200 Generalise reporting of a 'simulation'\''s' issues '(#2080).' commit 762546bec779495f9dc7694a4e8538213731e4a8 Author: Alan Garny '' Date: Mon May 13 12:33:16 2019 +1200 Some minor cleaning up. commit dee478082eb1c55da6894eaad96ce60d66f5cb5f Author: Alan Garny '' Date: Mon May 13 12:01:59 2019 +1200 Some minor cleaning up. commit 5db96513cb241decd1e056ed33189914aa828969 Merge: c9901f7d8 0203602ef Author: David Brooks '' Date: Mon May 13 08:42:27 2019 +1200 Merge branch ''\''issue-2080'\''' into pythonplugin commit 0203602efbba4458b1911c2b148dab76159b95aa Author: David Brooks '' Date: Mon May 13 08:40:34 2019 +1200 Missed a commit... '(#2080).' commit d6a58c9595fd4f1aac5ec61705428b921947a33b Author: David Brooks '' Date: Mon May 13 08:16:44 2019 +1200 Remember if a simulation has any blocking issues '(#2080).' commit c9901f7d8a6aa897776d5e40dc71778aea11a89d Merge: a33f2da42 2512e39ad Author: David Brooks '' Date: Sun May 12 20:28:16 2019 +1200 Merge branch ''\''issue-2080'\''' into pythonplugin commit 2512e39ad5fb51592a8b783e2b19f6512c367f6b Author: David Brooks '' Date: Sun May 12 20:27:10 2019 +1200 Minor code tidy '(#2080).' commit a33f2da42131845c8bb0419942eea618a22958e1 Merge: f4f39aa55 4cabf7f0f Author: David Brooks '' Date: Sun May 12 20:14:23 2019 +1200 Merge branch ''\''issue-2080'\''' into pythonplugin commit 4cabf7f0f11ce910cb01d87d13b38c8eee34d04f Author: David Brooks '' Date: Sun May 12 19:41:03 2019 +1200 ODE/DAE error message is now in a different plugin '(#2080).' commit 875912885cd1553be6acf03f881c1a9b10601234 Author: David Brooks '' Date: Sun May 12 19:23:55 2019 +1200 Generalise reporting of a 'simulation'\''s' issues '(#2080).' commit f4f39aa55f4f0551d0714a7ae555805a22a3aeef Merge: ac8ad8496 7c290c590 Author: David Brooks '' Date: Sun May 12 16:06:17 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit 7c290c590ffe6d75899b1051a79239a9a1466328 Merge: 5eb306c3b 1c810ae60 Author: Alan Garny '' Date: Sun May 12 11:59:08 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 1c810ae60f74e1c7d61dece74eb3b3aa02ddabe3 Author: Alan Garny '' Date: Sun May 12 11:00:07 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit ac8ad84968413383f9a0aa097493a556e1f4737c Author: David Brooks '' Date: Sat May 11 11:11:44 2019 +1200 Python: update IPython and Jupyter packages. commit b2ffa18284b5d695202259787e65dfe4f2850aa8 Merge: 49a5a5782 f7ef3cc5d Author: David Brooks '' Date: Fri May 10 22:03:04 2019 +1200 Merge branch ''\''pythonplugin'\''' of git://github.com/dbrnz/opencor into pythonplugin commit 49a5a5782709bb36502a61c5d25608361b3c327a Author: David Brooks '' Date: Fri May 10 22:01:58 2019 +1200 Python: update typedef for VC 2017. commit f7ef3cc5d4b1b9869a1b608162ceae6f8eb71b07 Author: David Brooks '' Date: Fri May 10 21:49:29 2019 +1200 Python: fix '`run_python`' script. commit 0c33c1353721655a35ec5f4629832c0d4565f49a Author: David Brooks '' Date: Fri May 10 20:57:11 2019 +1200 Python: update packages for Linux. commit ca7dbf5526ad5c68956dbd219a298751b2528758 Author: David Brooks '' Date: Fri May 10 18:09:13 2019 +1200 Python: fix typo. commit 1c41987917be430ebd17e87475f7c4c0e0d6c3b4 Author: David Brooks '' Date: Fri May 10 17:55:05 2019 +1200 Python: latest Jupyter 'doesn'\''t' recognise '`localhost`' so explicitly use '`127.0.0.1`' as listen address. commit 3d62f0b7aef17c06cabe1988eae95cec1debd2ec Author: David Brooks '' Date: Fri May 10 15:44:19 2019 +1200 Python: make sure '`pip`' is 'current;' update JupyterLab to 0.35.6. commit e351818c310dbca92ff8374d723a974c08aa086c Author: David Brooks '' Date: Fri May 10 14:41:38 2019 +1200 Python: add helper scripts for running Python scripts from the command line. commit 17eff3cbcdabf5c9f7e9dedf4699e71ec469cf94 Author: David Brooks '' Date: Fri May 10 11:44:09 2019 +1200 Python: correctly set a 'simulation'\''s' solver and its properties '(#2078).' commit 9ab9c6101f2ea870b4fc588106ae7e7e8b1f9ab8 Author: David Brooks '' Date: Fri May 10 11:41:01 2019 +1200 Python: minor code tidy. commit cd9c6cbfa3dbc680a56aa4e3cb3cf525d74ce5b1 Author: David Brooks '' Date: Tue May 7 11:29:47 2019 +1200 Python: minor fixes to get a clean debug build. commit a145ccac143d3bcc1c9663c39273f1a700ec22e6 Merge: a2ab60c7b 5eb306c3b Author: David Brooks '' Date: Mon May 6 09:36:43 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit a2ab60c7b92c72fb878a3d2e0637b050d016fea7 Author: David Brooks '' Date: Mon May 6 09:34:22 2019 +1200 Python: tidy code. commit 5eb306c3bd2550877a5dd7d93a5a16a01fdbbe78 Author: Alan Garny '' Date: Mon May 6 09:33:44 2019 +1200 Some minor cleaning up. commit c17123b56b3c897c75f183103c102c46deb2dd70 Merge: 8ffeae512 874db2a40 Author: Alan Garny '' Date: Sun May 5 17:52:48 2019 +1200 Merge pull request '#2077' from agarny/new-snapshot New snapshot. commit 874db2a40db47a5e0ed4a909272fb203d3503eb8 Author: Alan Garny '' Date: Sun May 5 17:25:14 2019 +1200 New snapshot. commit 28689ad883c59b8fdbb8adc7a0ec2fb39a7fcd44 Author: Alan Garny '' Date: Sun May 5 17:23:13 2019 +1200 Some minor cleaning up of our downloads pages. commit a25b4079d65442754082d48f13bbf94318688af0 Author: Alan Garny '' Date: Sun May 5 17:19:31 2019 +1200 Slight update to our supported platforms page. commit 8ffeae512f10627948453db22bdfb5c5519dbeaf Merge: 1d7133a2a 4e5d5427c Author: Alan Garny '' Date: Sun May 5 00:23:11 2019 +1200 Merge pull request '#2076' from agarny/cleaning-up Some minor cleaning up. commit 4e5d5427c949b22f0603215d5f75037fdc46cf94 Author: Alan Garny '' Date: Sat May 4 23:50:48 2019 +1200 Some minor cleaning up. commit e6732bd9a2c87d51bd632db786bbd80f9d41630a Author: Alan Garny '' Date: Sat May 4 23:43:03 2019 +1200 Some minor cleaning up. commit bd8abe91852b2706d8defe85d3a3fc80f74d6ec5 Author: Alan Garny '' Date: Sat May 4 23:41:09 2019 +1200 Some minor cleaning up. commit 49e892c252ae57fbed12aa399523fd3b38ff04e6 Author: David Brooks '' Date: Fri May 3 10:03:27 2019 +1200 Python: add compiler pragmas for Linux build. commit ff470f7d7f0fb6b6a6f5521f919600fc9d2c01e7 Author: David Brooks '' Date: Thu May 2 21:47:41 2019 +1200 Sundials: our use of '`NV_DATA_S`' requires an additional diagnostic pragma. commit b547145be058ec844a0f4195f5d72ddd8e0e1ed1 Author: David Brooks '' Date: Thu May 2 21:44:57 2019 +1200 Python: use '`pythonbegin`' and '`pythonend`' headers for compiler pragmas. commit dfb40b45891894ad8137495c476d8f79e4e2d6fa Author: David Brooks '' Date: Thu May 2 15:02:21 2019 +1200 Python: fix compiler '`shadow`' warning. commit 2efab8b294efccaf5b8438ffb7bf2216b709cf75 Author: David Brooks '' Date: Thu May 2 15:01:57 2019 +1200 Python: tidy up use of includes. commit 082a75e332e00edf46c62d2b7170cd39816cb39b Author: David Brooks '' Date: Thu May 2 15:01:15 2019 +1200 Python: tidy code. commit 4a3c18ebe0c2ebbc868f5894e53128c7f1057775 Author: David Brooks '' Date: Thu May 2 15:00:33 2019 +1200 Python: use a function to cast a Python object to Python Qt. commit 6b973962512e2e9bf98d53e1f0d4b699ed9fecf5 Author: David Brooks '' Date: Thu May 2 14:57:01 2019 +1200 Python: use '`pragma`' to resolve compiler warnings. commit 6db5f69dccc002d8324c460097bad3a2c7df7f4f Author: David Brooks '' Date: Thu May 2 14:51:54 2019 +1200 Python: clean up merge from '`master`.' commit 25f5c08091d448e364f84e49a472619c34884624 Author: David Brooks '' Date: Thu May 2 14:46:10 2019 +1200 Python: references to '`enum`' constants now include a type. commit 2cf32137d1a1b453c79040744b3ca2e24cbe7fbd Author: David Brooks '' Date: Thu May 2 14:40:40 2019 +1200 Python: add missing destructor for interface. commit fa6d1073d27c22d4332f622dcd2810be2c63612f Author: David Brooks '' Date: Thu May 2 14:39:11 2019 +1200 Python: tidy up name of include file. commit 1d7133a2afe2541ed29cb803a51e080bc6e150d1 Author: Alan Garny '' Date: Tue Apr 30 16:31:36 2019 +1200 Some minor cleaning up. commit 36394398590d1cbbf5db67f4fd3d3ceaf0ff3a2c Author: Alan Garny '' Date: Tue Apr 30 15:03:36 2019 +1200 Some minor cleaning up. commit 7f5853840d57659c65d1cc1b8aedc6feac651c88 Author: Alan Garny '' Date: Tue Apr 30 14:45:21 2019 +1200 Some minor cleaning up. commit 782bfd7bb005d6741c3e753c23152cb0d902a0af Merge: a585e6b24 c526c5fa8 Author: David Brooks '' Date: Tue Apr 30 14:45:12 2019 +1200 Merge branch ''\''master'\''' into pythonplugin commit c526c5fa85071e5d084472e3298c7de7c2f45bf9 Author: Alan Garny '' Date: Fri Apr 26 10:59:51 2019 +1200 Some minor cleaning up. commit f1e260f9c755ee6e37c011bd2d0d7c3a4ff48fd0 Merge: 8f1fa72a7 6f6662cd6 Author: Alan Garny '' Date: Wed Apr 24 17:37:43 2019 +1200 Merge branch ''\''master'\''' into issue1801. commit 6f6662cd60ab90511687066d51932ce5ac42fa26 Author: Alan Garny '' Date: Wed Apr 24 17:36:25 2019 +1200 Some minor cleaning up. commit 8f1fa72a70ef56e19e545f317a58bf10ab9d9ded Merge: 474810285 31dbf734b Author: Alan Garny '' Date: Wed Apr 24 00:03:29 2019 +1200 Merge branch ''\''master'\''' into issue1801 commit 31dbf734be0b54ec81d17824a60301f4abfff377 Merge: 7dd879fae e0f9baf5a Author: Alan Garny '' Date: Tue Apr 23 17:01:35 2019 +1200 Various improvements. commit e0f9baf5ab3be566dbb83c73e3caa4cbbecf4655 Author: Alan Garny '' Date: Tue Apr 23 16:11:34 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 7de3defc22e47dd8f71b5b48799e42b86c2831ff Author: Alan Garny '' Date: Tue Apr 23 15:47:27 2019 +1200 CellML Annotation view: make sure that the qualifier look up is retranslated if needed. commit 164184ad4d90ff82e0efe24b53a2e42be537f923 Author: Alan Garny '' Date: Tue Apr 23 15:34:12 2019 +1200 Some minor cleaning up. commit 565c6db178057eae6c017583732f4c8e0f180cc6 Author: Alan Garny '' Date: Tue Apr 23 15:01:11 2019 +1200 Some minor cleaning up. commit 2eb23fd1259b8880fafe3254525c0ee79094d48e Author: Alan Garny '' Date: Tue Apr 23 14:46:55 2019 +1200 Some minor cleaning up. commit 198f035ab5d12dd82baca3cf09c6d6ad7c4d1e55 Author: Alan Garny '' Date: Tue Apr 23 14:46:32 2019 +1200 Some minor cleaning up. commit 27265747f89dfd9c72187400c490ee4e531d926c Author: Alan Garny '' Date: Tue Apr 23 14:15:58 2019 +1200 Some minor cleaning up. commit 3c9d6a5b5474971a7668324562d52e4f36b6dc23 Author: Alan Garny '' Date: Tue Apr 23 14:04:07 2019 +1200 Some minor cleaning up. commit f503fa9e4b3dfe11277e0857a51b4f2204e90dca Author: Alan Garny '' Date: Tue Apr 23 13:38:04 2019 +1200 Some minor cleaning up. commit b5dd9f4c6792506cfd20cc315e439800367a4778 Merge: 372e74154 7dd879fae Author: Alan Garny '' Date: Tue Apr 23 13:29:28 2019 +1200 Merge branch ''\''master'\''' into cleaning-up. commit 372e74154851a2ab568a0986e16e351da874e297 Author: Alan Garny '' Date: Tue Apr 23 13:29:13 2019 +1200 Some minor cleaning up. commit 99a6243041a88e502aa19d87e077bc34a0109037 Author: Alan Garny '' Date: Tue Apr 23 13:14:52 2019 +1200 Some minor cleaning up. commit 7dd879fae41adff44af23a072b50cbd77c022666 Merge: 04dbdcdc3 6d6470a77 Author: Alan Garny '' Date: Tue Apr 23 13:00:06 2019 +1200 Renamed QScintillaSupport to QScintillaWidget '(closes' '#2066).' commit 711d2e2018289d24f3047e6208f13958ced7cefc Author: Alan Garny '' Date: Tue Apr 23 12:53:44 2019 +1200 Some minor cleaning up. commit 01451bf4f3f338f58479f03519c58834ba2cd9e0 Author: Alan Garny '' Date: Tue Apr 23 12:37:05 2019 +1200 Some minor cleaning up. commit 6d6470a77d45719be99fd1170667ebaa3603b267 Author: Alan Garny '' Date: Tue Apr 23 12:23:27 2019 +1200 Slight update to our downloads page '(#2066).' commit c034c881e8c5e024f72b68e71f524f378b3d1136 Author: Alan Garny '' Date: Tue Apr 23 12:21:28 2019 +1200 Renamed QScintillaSupport to QScintillaWidget '(#2066).' commit 04dbdcdc3f503ce017f2ea662a69bf5fec9fa51d Merge: df000d4f9 523084da4 Author: Alan Garny '' Date: Tue Apr 23 12:17:06 2019 +1200 PMR Workspaces window: first list changed files and then show the 'user'\''s' comment '(in' the synchronisation 'dialog)' '(closes' '#2065).' commit 523084da4de794504dd292eb5fe86a57c8fd2f1c Author: Alan Garny '' Date: Tue Apr 23 11:56:54 2019 +1200 Slight updates to our what is new and downloads pages '(#2065).' commit 161bfded263cdc25134e6a65a1eb3d58356c0d83 Merge: 675721404 df000d4f9 Author: Alan Garny '' Date: Tue Apr 23 11:52:13 2019 +1200 Merge branch ''\''master'\''' into issue2065. commit df000d4f918aa000fbb55aa47977b07bf068c705 Merge: a88d21d9f bb5adbd23 Author: Alan Garny '' Date: Tue Apr 23 11:51:42 2019 +1200 Mesa: upgraded to version 19.0.2 '(closes' '#2070).' commit 675721404825fc41091345f98442d1e7b8ed87ff Author: Alan Garny '' Date: Tue Apr 23 11:50:55 2019 +1200 PMR Workspaces window: swapped the message and changes widgets '(#2065).' commit 9acd7c8c83a97a8c2fa2d4af03c7e709c04c8e69 Author: Alan Garny '' Date: Tue Apr 23 11:47:07 2019 +1200 Some minor cleaning up. commit bb5adbd238118140b9ba69a891578b5a011ea5a1 Author: Alan Garny '' Date: Tue Apr 23 11:23:04 2019 +1200 Revert '"Only' build our Mesa package '(#2070)."' This reverts commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41. commit 667789a837b20b6a5bf909a6a1e36ba631021b58 Author: Alan Garny '' Date: Tue Apr 23 11:22:16 2019 +1200 Slight update to our downloads page '(#2070).' commit d38102e0b79a6efd52efd52fd13de9eb6ebade67 Author: Alan Garny '' Date: Tue Apr 23 11:20:26 2019 +1200 Mesa: binary for version 19.0.2 '(#2070).' commit e2c7d9e3f0dc984ebb824914bfb28e41d99316ea Author: Alan Garny '' Date: Tue Apr 23 11:14:30 2019 +1200 Mesa: upgrade to version 19.0.2 '(#2070).' commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41 Author: Alan Garny '' Date: Tue Apr 23 11:12:53 2019 +1200 Only build our Mesa package '(#2070).' commit a88d21d9f0d2a4d07c33e3ab587828c8106c2642 Merge: 451c9c73f 186d08340 Author: Alan Garny '' Date: Tue Apr 23 11:09:27 2019 +1200 jQuery: upgraded to version 3.4.0 '(closes' '#2068).' commit 186d0834009c4dd875cfbb94af1d1d9fdc424223 Author: Alan Garny '' Date: Tue Apr 23 10:51:08 2019 +1200 Slight update to our documentation '(#2068).' commit 83e5198bd33db350900975c1b275cdcdb4f5c8bd Merge: 9678bb581 451c9c73f Author: Alan Garny '' Date: Tue Apr 23 10:49:07 2019 +1200 Merge branch ''\''master'\''' into issue2068. commit 451c9c73f65a4880f6be5ecbb3302fd231fa85ae Merge: 0715bcf3c b6a8cdee8 Author: Alan Garny '' Date: Tue Apr 23 10:48:42 2019 +1200 libSBML: upgraded to version 5.18.0 '(closes' '#2064).' commit b6a8cdee8f536d12a0e98809644b59fe6ab658d5 Author: Alan Garny '' Date: Tue Apr 23 10:24:35 2019 +1200 libSBML: updated our tests '(#2064).' commit 9678bb5814451d634ce54d6b31d0125e91507a68 Author: Alan Garny '' Date: Tue Apr 23 10:18:58 2019 +1200 jQuery: upgraded to version 3.4.0 '(#2068).' commit 5b2ea9dc53fd7ca72f697cbc8c5410cd107e780a Author: Alan Garny '' Date: Tue Apr 23 10:13:00 2019 +1200 Make sure that we can use libSBML 5.18.0 on macOS '(#2064).' commit 48a8d0167b8acbc306faf4da8e93bf83eabc9c16 Author: Alan Garny '' Date: Tue Apr 23 10:12:34 2019 +1200 Revert '"Only' build the libNuML and libSEDML packages '(#2064)."' This reverts commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e. commit 9739ffe162fc8727366c848fc1c92c8773e39437 Author: Alan Garny '' Date: Tue Apr 23 10:12:14 2019 +1200 libNuML and libSEDML: new binaries following the release of libSBML 5.18.0 '(#2064).' commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e Author: Alan Garny '' Date: Tue Apr 23 09:56:54 2019 +1200 Only build the libNuML and libSEDML packages '(#2064).' commit 73d243169581f9323465bf2ab17d33dd34d38f3e Author: Alan Garny '' Date: Tue Apr 23 09:46:54 2019 +1200 Revert '"Only' build the libSBML package '(#2064)."' This reverts commit 2972166c4eb15c5adbd2ff52006226a481d198b4. commit d663859855fcf3142fe1483433ff291ae6d3827b Author: Alan Garny '' Date: Tue Apr 23 09:46:36 2019 +1200 Slight update to our downloads page '(#2064).' commit 4d966812f120bf9f203cfe633ab478c5dae33ec5 Author: Alan Garny '' Date: Tue Apr 23 09:46:16 2019 +1200 libSBML: binaries for version 5.18.0 '(#2064).' commit 62385b8b0f7ee05c359ddbdce66795a7b131a052 Author: Alan Garny '' Date: Tue Apr 23 09:14:25 2019 +1200 libSBML: upgraded to version 5.18.0 '(#2064).' Note: on Windows, we are now using MSVC 2017 hence we also updated the Windows dependencies. commit 2972166c4eb15c5adbd2ff52006226a481d198b4 Author: Alan Garny '' Date: Tue Apr 23 09:06:06 2019 +1200 Only build the libSBML package '(#2064).' commit 0715bcf3cebecf2914979b28eaa1f4089fd9c7e8 Merge: 3781995c5 41eeb2a6b Author: Alan Garny '' Date: Mon Apr 22 18:18:56 2019 +1200 Added support for Clang-Format '(closes' '#2061).' commit 41eeb2a6bd529f1c21cdd2817f2c1299727f033f Author: Alan Garny '' Date: Mon Apr 22 17:39:20 2019 +1200 Clang-Tidy: re-disable llvm-include-order '(#2061).' Indeed, we want Clang-Format to order things, but we $'don\342\200\231t' want Clang-Tidy to check for them since in some cases our includes may not be sorted, e.g. when we include CellML API related orders since we need to guard them with cellmlapibegin.h and cellmlapiend.h. commit 5556cfd68487b0af9b3d1fbc38d129b42df7b6ce Merge: 050f4e6eb 438d930d3 Author: Alan Garny '' Date: Mon Apr 22 17:35:01 2019 +1200 Merge branch ''\''issue2061'\''' of https://github.com/agarny/opencor into issue2061 commit 050f4e6ebcff4c483e7ade51039c63abacfb8a2c Author: Alan Garny '' Date: Mon Apr 22 17:34:56 2019 +1200 Windows batch file to format our code '(#2061).' commit 438d930d3bc85b38853b6cacea7a803efbc56ac9 Merge: 9ba81a25c 3781995c5 Author: Alan Garny '' Date: Mon Apr 22 16:22:27 2019 +1200 Merge branch ''\''master'\''' into issue2061. commit 3781995c514311e7862e061f7c8eb9850cfaf929 Merge: fc33ca3b8 9a2316631 Author: Alan Garny '' Date: Mon Apr 22 16:19:32 2019 +1200 Some minor cleaning up. commit 9a23166318b4ef0df8d09a6fad0046cc7c9cf363 Author: Alan Garny '' Date: Mon Apr 22 15:44:11 2019 +1200 Some minor cleaning up. commit 65d1a0aaff85aeeafc542765d045c97e5fe6083d Author: Alan Garny '' Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 9ba81a25c02c3e961075a966e8f2429dde284748 Author: Alan Garny '' Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 1a62b4f9d5e01d721aabaf4c9e9b43585214be7b Author: Alan Garny '' Date: Mon Apr 22 14:38:08 2019 +1200 Linux/macOS script to format our code '(#2061).' commit d82e7f84cf4916fa5f008e788af2653d71f52c52 Author: Alan Garny '' Date: Mon Apr 22 13:36:17 2019 +1200 Initial .clang-format file '(#2061).' Note: we used to disable llvm-include-order in Clang-Tidy, but we should have it back. This means that some of our files '(e.g.' 'src/plugins/support/CellMLSupport/src/cellmlfile.cpp)' will have to be reformatted a bit so that headers $'don\342\200\231t' get wrongly sorted '(because' of our, say, inclusion of $'\342\200\234cellmlapibegin.h\342\200\235' and '“cellmlapiend.h”).' commit fc33ca3b8fdb46cf0b468d5fe046890948d07e95 Merge: 77cd1f25e f456f5f65 Author: Alan Garny '' Date: Mon Apr 22 13:11:31 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings '(closes' '#2057).' This PR was checked '(on' 'Jenkins)' against Clang-Tidy, but this is clearly not going to be a long-term solution for OpenCOR since it really takes a long time '(between' 1h and 2h to do analyse both the release and debug versions of 'OpenCOR).' So, I am going to disable the Clang-Tidy checks in Jenkins, which means that we will have to rely on people '(me?)' enabling Clang-Tidy once in a while locally '(there' is an '`ENABLE_CLANG_TIDY`' option in 'OpenCOR'\''s' CMake 'script)' to make sure that our codebase is still '"OK".' commit f456f5f6578582b257306198e6d82bbc10064c0b Author: Alan Garny '' Date: Mon Apr 22 10:45:08 2019 +1200 Make sure that our Python and PythonPackages plugins have been dealt with before building our documentation. commit e8a4abdaa54fef32f5f6061680fdcaf61b064fb1 Author: Alan Garny '' Date: Sun Apr 21 18:33:36 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings '(#2057).' commit 7037071a0387b3466f28fa4ce1cbd26d9705cd3c Author: Alan Garny '' Date: Sun Apr 21 15:13:06 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings '(#2057).' commit 77cd1f25e08ba7947e11c09b1a0212e2d8d7570c Merge: e7beddd92 989c8fdfa Author: Alan Garny '' Date: Tue Apr 9 16:46:51 2019 +1200 Cleaning up. commit 989c8fdfac895c520f1846585f54b78a11b37939 Author: Alan Garny '' Date: Tue Apr 9 16:20:22 2019 +1200 Some minor cleaning up. commit f74d0a4010c7140f47bb56f5974e05a7f12b7ed2 Author: Alan Garny '' Date: Tue Apr 9 16:03:33 2019 +1200 Some minor cleaning up. commit f5657171ddd17dcfe87a95e97432d4d4f07017e8 Author: Alan Garny '' Date: Tue Apr 9 15:58:58 2019 +1200 Some minor cleaning up. commit 51700dfc2549f86aa0f64eed902c9278f5996481 Author: Alan Garny '' Date: Tue Apr 9 15:46:58 2019 +1200 Some minor cleaning up. commit e7beddd92f9b052403d7a1e3c973a63e3b8c2e74 Merge: 90cf7ebdd 33b39c059 Author: Alan Garny '' Date: Tue Apr 9 15:30:23 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 33b39c059b39e1701945735d90d8a206ba6c1fc9 Author: Alan Garny '' Date: Tue Apr 9 14:46:28 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 96ae94d6b3fde4e3adf0800319d46f0314bb58f2 Author: Alan Garny '' Date: Tue Apr 9 14:44:44 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 041d7334987234ba73ee81ffa1b31ecbf708bc13 Author: Alan Garny '' Date: Tue Apr 9 14:36:44 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 3f53d850a7fbc8422b16b97ffb365f14a399f4ef Author: Alan Garny '' Date: Tue Apr 9 14:34:50 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 7fd5bb4682e36bfc26736fb6d6151545ac77446e Author: Alan Garny '' Date: Tue Apr 9 14:29:49 2019 +1200 Some minor cleaning up. commit 6713cc4e24f0460c7175afd46346135590811880 Author: Alan Garny '' Date: Tue Apr 9 14:27:04 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit d0a58ea866f5d0b402f398da8f262019b830e40e Author: Alan Garny '' Date: Tue Apr 9 14:21:09 2019 +1200 Some minor cleaning up. commit 2e1c1c557effc50ebabfa70e0b8727104aa3bad2 Author: Alan Garny '' Date: Tue Apr 9 14:15:56 2019 +1200 Some minor cleaning up. commit 862fa3eaad51a5ef75edffba000034fcfb639a47 Author: Alan Garny '' Date: Tue Apr 9 13:52:07 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 0f0b963779e132a834bac5206ae4f002c3a9a840 Author: Alan Garny '' Date: Tue Apr 9 13:35:05 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit d2daa1e833d2be4ff63bf4e5160e6a45458c0364 Author: Alan Garny '' Date: Tue Apr 9 13:31:53 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 56fa3904bb09ed4231b27ee481165d708529262f Author: Alan Garny '' Date: Tue Apr 9 13:30:34 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 07e23d454611c842af2ace9f80630e727f33390d Author: Alan Garny '' Date: Tue Apr 9 13:28:32 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit cf01697c8a9a1999139dd8a18f5bc86372e4428f Author: Alan Garny '' Date: Tue Apr 9 13:24:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 452d601300388f4e87fb097406ed32477746400f Author: Alan Garny '' Date: Tue Apr 9 13:19:51 2019 +1200 Some minor cleaning up. commit 3f7558a4eb5396f7ce11da052927a967e30e9760 Author: Alan Garny '' Date: Tue Apr 9 13:15:13 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 6a85de55847ee520f13adb38f813b80de68cc437 Author: Alan Garny '' Date: Tue Apr 9 13:13:25 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 40127d1fed497623d92f5bcca5b044b3a1358549 Author: Alan Garny '' Date: Tue Apr 9 13:11:42 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 1d6aaa90e758e9c035f16a9e5b14532d5c2d7d92 Author: Alan Garny '' Date: Tue Apr 9 13:06:06 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit c711b2efddb9e84beaabbe027c29dabb8d2030e7 Author: Alan Garny '' Date: Tue Apr 9 10:59:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 2e9c7249b9f307d299a1c3540264f5a72a2be39e Author: Alan Garny '' Date: Tue Apr 9 10:55:40 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit be3e6599794e3dfe1471d84ab425489df7f11d39 Author: Alan Garny '' Date: Tue Apr 9 10:54:14 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 28b2036aa224730f1f1198eb762ec4905fa077ab Author: Alan Garny '' Date: Tue Apr 9 10:52:02 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 1060e3ab424c3ce6418ac0c0d7e6dcd9ea771f3d Author: Alan Garny '' Date: Tue Apr 9 10:49:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 8228242f40ceb66b99d3015ce19785b9baa78305 Author: Alan Garny '' Date: Tue Apr 9 10:43:39 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit c70646db8c0ed91fd29610308431c84a4f8d97cb Author: Alan Garny '' Date: Tue Apr 9 10:36:00 2019 +1200 Some minor cleaning up. commit d95ff892e51a9ef539f9e0f28bd1f22670614191 Author: Alan Garny '' Date: Tue Apr 9 10:00:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit cd11e94df562576bd47e1532b260d653e3dd67e8 Author: Alan Garny '' Date: Tue Apr 9 09:50:47 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit ad1b5f552a47203c4a29fead9458ae6525d32d8e Author: Alan Garny '' Date: Tue Apr 9 09:45:56 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 15a3fb5d1d609e5d4f2f83428acd964f812b5be8 Author: Alan Garny '' Date: Tue Apr 9 09:41:17 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 38187d5103139d242f07b94d9e370a2a84f7f81d Author: Alan Garny '' Date: Tue Apr 9 09:37:56 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 667ba2abdc76d862b98c36a0a869301df2d4acd1 Author: Alan Garny '' Date: Tue Apr 9 08:56:43 2019 +1200 Some minor cleaning up. commit 1ce36a77e040d13057b3cd9981a525f5b6785af3 Author: Alan Garny '' Date: Tue Apr 9 08:55:40 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit fce9bea649020eefd19cd2b3aa3c73043205239a Author: Alan Garny '' Date: Tue Apr 9 08:28:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 50296f4414687d30fced013181d29cfacf0ed650 Author: Alan Garny '' Date: Tue Apr 9 08:25:48 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit a1a69196deed0125f87ef37a82ff820c41eada03 Author: Alan Garny '' Date: Tue Apr 9 08:15:33 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 68318be959f10a02ad73f2273dc0af09d24dc92e Author: Alan Garny '' Date: Mon Apr 8 18:06:26 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 44d334e9215670fd691fb46a3e9b2bf1702d0516 Author: Alan Garny '' Date: Mon Apr 8 17:35:11 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit deda749cb28e51e78e57b1faf132016d22f7f391 Author: Alan Garny '' Date: Mon Apr 8 17:27:17 2019 +1200 Replaced some '`enum`s' with some '`enum' 'class`s.' commit 90cf7ebdd10f0f828d4f6672ad881f3326f84acd Merge: e766ebea6 f3b5d1d5e Author: Alan Garny '' Date: Fri Apr 5 18:47:05 2019 +1300 Some minor cleaning up. commit f3b5d1d5edf39b0d9f7d31c51c593edf6715b5dd Author: Alan Garny '' Date: Fri Apr 5 12:31:14 2019 +1300 Some minor cleaning up. commit 787bc2d856b88c165ab50815a76a2f0f6b4d1a1d Author: Alan Garny '' Date: Fri Apr 5 12:17:26 2019 +1300 Simulation Experiment view: make sure that SED-ML-related messages are properly formatted. commit 76118351c43bf4a8dd00ff9aa79ce7fe41fc86c0 Author: Alan Garny '' Date: Fri Apr 5 12:08:06 2019 +1300 SED-ML support: prevent duplicate errors from libSEDML. commit 1ddbf2c0ad12856905d4a5fdec2117dad43e4e8d Author: Alan Garny '' Date: Fri Apr 5 11:12:06 2019 +1300 Some minor cleaning up. commit f24ff8cff4d77af4c8b776f9de0a74e6b73649ab Author: Alan Garny '' Date: Fri Apr 5 11:04:40 2019 +1300 SED-ML support: improved our detection of SED-ML files. commit 526b808e3376ad4703f2e9ea143720494d3aa406 Author: Alan Garny '' Date: Fri Apr 5 11:02:17 2019 +1300 Simulation support: make sure that we have a runtime before doing certain things. commit e766ebea6065553b096a3e7f848746d68b9f77a2 Author: Alan Garny '' Date: Thu Apr 4 16:05:34 2019 +1300 Some minor cleaning up. commit 022d95b71e4c11b094309c355d1dabc57d77aaef Merge: 8a52fe433 27c4eb923 Author: Alan Garny '' Date: Thu Apr 4 13:05:30 2019 +1300 Some minor cleaning up. commit 27c4eb923d033b9b04438b8099df18355a46c437 Author: Alan Garny '' Date: Thu Apr 4 12:46:13 2019 +1300 Some minor refactoring. commit 04948005237f11f06e8a79da302e982a6029daf1 Author: Alan Garny '' Date: Thu Apr 4 12:45:53 2019 +1300 Some minor cleaning up. commit 400c3e389feb9c6972527a151bc9d1255a9226fc Author: Alan Garny '' Date: Thu Apr 4 12:45:26 2019 +1300 SED-ML support: always create an L1V3 SED-ML document. commit 2dfef31d594223e35899eaf2d820d895451774ae Author: Alan Garny '' Date: Thu Apr 4 12:44:22 2019 +1300 Some minor cleaning up. commit 8a52fe433d3f25ab143d884f1264f2688e1383cb Merge: f192b77d3 0fa569554 Author: Alan Garny '' Date: Wed Apr 3 15:52:16 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS '(closes' '#2050).' commit 0fa569554abb307982eed32fee232c6f40154f5a Author: Alan Garny '' Date: Wed Apr 3 15:28:57 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS '(#2050).' commit f192b77d35bc68517ff3b79f9251e9cb6edad680 Merge: dce3cd19d bb034d545 Author: Alan Garny '' Date: Thu Mar 28 09:23:58 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS '(closes' '#2050).' commit bb034d545c1748326cb44895d550d25abaa26633 Author: Alan Garny '' Date: Thu Mar 28 08:58:38 2019 -0700 Revert '"Temporarily' build QScintilla and 'Qwt."' This reverts commit 7d2677eaf67072e8f135602108e95a8e663b5e00. commit 9f8609d4b0b344a665f998a788108c1c9dbcbb0d Author: Alan Garny '' Date: Thu Mar 28 08:57:52 2019 -0700 Slight update to our downloads page '(#2050).' commit e20bd37152f9ef04a007ee2ef693d7b083b4c2a9 Author: Alan Garny '' Date: Thu Mar 28 08:54:53 2019 -0700 Updated Linux binary for QScintilla 2.11.1 and Qwt 6.1.4 '(#2050).' Fixed the RPATH value. commit 31f0a33831c4b2eb5394d72da6c8921d805f6131 Author: Alan Garny '' Date: Wed Mar 27 22:04:16 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit 3d349857f98043b327f0f24633ed6b3deaf60efb Author: Alan Garny '' Date: Wed Mar 27 21:55:49 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit 85b0f6896c08e31afc7ca680defdfb6c3a6ecdb3 Author: Alan Garny '' Date: Wed Mar 27 21:51:22 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit 32155b9340e77eb7ac6fd1f4fcbe88d31d12eb54 Author: Alan Garny '' Date: Wed Mar 27 21:48:58 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit 03dbf983f46d12f0d187635bc3204f693582a0df Author: Alan Garny '' Date: Wed Mar 27 21:39:39 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit dc97febb8b73fd341affcc22da8264d19eea11f9 Author: Alan Garny '' Date: Wed Mar 27 16:46:25 2019 -0700 Some minor cleaning up. commit 505da57e623a20dc8533801218e9361935b19c66 Author: Alan Garny '' Date: Wed Mar 27 16:37:57 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit fd4d12958bc486997fc68b153defeed57ef53a5d Author: Alan Garny '' Date: Wed Mar 27 16:30:33 2019 -0700 Fix the RPATH for QScintilla and Qwt on Linux '(#2050).' commit a43846777a20b08f907fc27272e77124a14ee7f9 Author: Alan Garny '' Date: Wed Mar 27 16:23:59 2019 -0700 Some minor cleaning up. @executable_path/../Frameworks now gets automatically added when building QScintilla and Qwt. Something clearly happened recently since we used to need to add @executable_path/../Frameworks. Maybe the new version of Qt is somehow responsible for this or maybe CMake '(most' 'likely)?' Whatever the case, we must not add @executable_path/../Frameworks anymore otherwise the build fails with a message telling us that the RPATH is already set, etc. commit 3a49030cc27a538bfd12bce5b5d1af98761f289a Author: Alan Garny '' Date: Wed Mar 27 16:09:55 2019 -0700 CMake: refactored our code a bit so that we now have a '`strip_file()`' macro. Except for the packageXXX.cmake file, for which we obviously need to call '`strip`' directly. commit 9ecbc81605a90007ac28d2abea7152eaeb36f872 Author: Alan Garny '' Date: Wed Mar 27 14:40:43 2019 -0700 Some minor cleaning up. commit 86ea872e4bfb57381205265f8ea83fda3f59e0c4 Author: Alan Garny '' Date: Wed Mar 27 14:36:51 2019 -0700 Some minor cleaning up. commit ce7f8d899d5af0b73c03a07219ac648510089e86 Author: Alan Garny '' Date: Wed Mar 27 13:47:53 2019 -0700 Some minor cleaning up. commit 7d2677eaf67072e8f135602108e95a8e663b5e00 Author: Alan Garny '' Date: Wed Mar 27 12:04:00 2019 -0700 Temporarily build QScintilla and Qwt. commit 969e17aae29817e020c6fa0051948319c9e0b4f7 Author: Alan Garny '' Date: Wed Mar 27 12:03:28 2019 -0700 Linux: 'don'\''t' need to deploy some system libraries anymore '(#2050).' At least, not for Ubuntu 18.04 LTS. Will be interesting to see whether it still works with say Ubuntu 18.10 and the forthcoming 19.04. commit 702255556524c7fbc6adff06aae88701076a451d Author: Alan Garny '' Date: Wed Mar 27 10:29:55 2019 -0700 Linux: make sure that all our binary files use '`RPATH`' and not '`RUNPATH`' '(#2050).' commit 371f71886cf7e0e5a6e09d5aee31a2a8b968fd22 Author: Alan Garny '' Date: Wed Mar 27 09:56:39 2019 -0700 Some minor cleaning up. commit a2265fa0616e205621b7081c0f2d3217aa37de4e Author: Alan Garny '' Date: Mon Mar 25 20:27:29 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS '(#2050).' commit 8b44c068093cb20b65df526a02f0e9e4abebea49 Author: Alan Garny '' Date: Mon Mar 25 15:05:55 2019 -0700 Some minor cleaning up. commit 6bbafc4a06b9bcc32e7eed08f79fb2c566b5d612 Author: Alan Garny '' Date: Mon Mar 25 14:58:28 2019 -0700 Slight update to our supported platforms '(#2050).' commit dce3cd19d8748a095965fb34accd6917113f5e0f Merge: 7b4de3b52 1ad0e1143 Author: Alan Garny '' Date: Sun Mar 24 09:11:55 2019 +1300 libSEDML: removed our use of an explicit release tag '(#2042).' commit 1ad0e1143765b6cf53edd5cb47dc691e019c520e Author: Alan Garny '' Date: Sun Mar 24 08:49:39 2019 +1300 libSEDML: removed our use of an explicit release tag '(#2042).' The release tag used to be '`0.4.4`,' which required our use of an explicit release tag since by default we would expect the release tag to be '`v0.4.4`.' However, a new '`v0.4.4`' release tag has been created on GitHub, hence now we $'don\342\200\231t' need to specify an explicit release tag. commit 7b4de3b526cd22fde89f7c2b60d805ef99010af8 Merge: c34e93562 f5beb289a Author: Alan Garny '' Date: Sat Mar 23 16:25:21 2019 +1300 libSEDML: upgraded to version 0.4.4 '(closes' '#2042).' commit f5beb289a5f0bf69263a9b2d5757803f1753d74b Author: Alan Garny '' Date: Sat Mar 23 16:05:53 2019 +1300 libSEDML: upgraded to version 0.4.4 '(#2042).' commit 315132b2e3774f1f0bf78c994f74790c3fc3a383 Author: Alan Garny '' Date: Sat Mar 23 15:54:48 2019 +1300 Slight update to our downloads page '(#2042).' commit d6c53abcf57aef7ca5fb046e85a35a4d825862ca Author: Alan Garny '' Date: Sat Mar 23 15:51:27 2019 +1300 Revert '"Only' build libSEDML '(#2042)."' This reverts commit 4ccd3818298e389d1348bf529307830adbc52cdb. commit 5e92806443cc46a1ac998d7a8234111b6ad52386 Author: Alan Garny '' Date: Sat Mar 23 15:51:09 2019 +1300 libSEDML: binaries for version 0.4.4 '(#2042).' commit efe1e517707cf66587a133c2fbec26d544a8f97c Author: Alan Garny '' Date: Sat Mar 23 15:41:10 2019 +1300 libSEDML: upgraded to version 0.4.4 '(#2042).' commit 5da0f1e7b85f16985f414ee15bb10d871b3cd676 Author: Alan Garny '' Date: Sat Mar 23 15:39:24 2019 +1300 libSEDML: upgraded to version 0.4.4 '(#2042).' commit 4ccd3818298e389d1348bf529307830adbc52cdb Author: Alan Garny '' Date: Sat Mar 23 15:38:58 2019 +1300 Only build libSEDML '(#2042).' commit c34e93562662cd8a2fcdfdd338a8cdf816e0406e Merge: 864d8c572 3c48dd0d3 Author: Alan Garny '' Date: Sat Mar 23 14:42:09 2019 +1300 LLVM+Clang: upgraded to version 8.0.0 '(closes' '#2040).' commit 3c48dd0d3db35d9058d85a436f1ef347b3aa8494 Author: Alan Garny '' Date: Sat Mar 23 13:07:54 2019 +1300 Revert '"Only' build our LLVMClang plugin '(#2040)."' This reverts commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9. commit 95927f49164b008167ac817043d6a42eb4a423bb Author: Alan Garny '' Date: Sat Mar 23 13:07:32 2019 +1300 LLVMClang: binaries for version 8.0.0 '(#2040).' commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9 Author: Alan Garny '' Date: Sat Mar 23 09:48:27 2019 +1300 Only build our LLVMClang plugin '(#2040).' commit e832f9d439dc2e3acd3ab4aa36ad62981908897a Author: Alan Garny '' Date: Sat Mar 23 09:42:55 2019 +1300 Compiler engine: simplified our 'compileCode()' method following changes to LLVM+Clang. commit f479842519c7c16c964daac6723c1543c0865ecf Author: Alan Garny '' Date: Sat Mar 23 01:19:24 2019 +1300 Slight update to our downloads page '(#2040).' commit 2d923563e9ca41c05123fdabeb8c761801c01c1e Author: Alan Garny '' Date: Sat Mar 23 01:16:37 2019 +1300 Revert '"Only' build our LLVMClang plugin '(#2040)."' This reverts commit 624cd66011981e0631d924c3174948aff5bd3cc5. commit dd843acc25d3d778e1cb682a2a66db1e792c8072 Author: Alan Garny '' Date: Sat Mar 23 01:16:19 2019 +1300 LLVMClang: binaries for version 8.0.0 '(#2040).' commit c7f5858a89a19768d843df09ceb4e9429333b0c9 Author: Alan Garny '' Date: Sat Mar 23 00:55:06 2019 +1300 LLVMClang: only build/enable what we want/need '(#2040).' commit 28da7961de0e5c60e29efc7d256c397248963cab Merge: 0436cf3b3 864d8c572 Author: Alan Garny '' Date: Fri Mar 22 16:30:52 2019 +1300 Merge branch ''\''master'\''' into issue2040. commit 864d8c572909a79304eb76863a44b89b8a2fc79c Merge: a87719042 75f3d7fae Author: Alan Garny '' Date: Fri Mar 22 16:29:58 2019 +1300 Mesa: upgraded to version 18.3.5 '(closes' '#2044).' commit 75f3d7fae27330ea72232a648b3839e362e578bf Author: Alan Garny '' Date: Fri Mar 22 16:01:01 2019 +1300 Revert '"Only' build the Mesa library '(#2044)."' This reverts commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af. commit 958e8149e7a4d09e1787209038ce3c6db1a07eb3 Author: Alan Garny '' Date: Fri Mar 22 15:58:06 2019 +1300 Mesa: binary for version 18.3.5 '(#2044).' commit c4eb44a0adb0dd6e7768f5bc451c1b16c5522ac3 Author: Alan Garny '' Date: Fri Mar 22 15:56:34 2019 +1300 Slight update to our downloads page '(#2044).' commit 94f74b09f89d47d3a69e3dce39078c4f2ac2c464 Author: Alan Garny '' Date: Fri Mar 22 15:48:08 2019 +1300 Mesa: upgraded to version 18.3.5 '(#2044).' commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af Author: Alan Garny '' Date: Fri Mar 22 15:47:14 2019 +1300 Only build the Mesa library '(#2044).' commit 0436cf3b3214d55b4f342d2f7f2491e31b8f93ea Merge: 93d7dad79 a87719042 Author: Alan Garny '' Date: Fri Mar 22 13:33:49 2019 +1300 Merge branch ''\''master'\''' into issue2040. commit a87719042aced850544721fea356f1c7182a8a7c Merge: 3f7e13283 e5da897cd Author: Alan Garny '' Date: Fri Mar 22 13:32:24 2019 +1300 General: now rely on Visual Studio 2017 Update 9 to build OpenCOR on Windows '(closes' '#2041).' commit e5da897cdebbdbc2f36b84be3821dd42df3fdf58 Author: Alan Garny '' Date: Fri Mar 22 09:52:15 2019 +1300 Some minor cleaning up. commit 60cc12828d3d93a45b3a7de4d6026ed7a2f94a3f Author: Alan Garny '' Date: Fri Mar 22 09:49:20 2019 +1300 Slight update to our downloads pages '(#2041).' commit dc312ac6ef957de1eb1bc7780a7cc9fd0038f082 Author: Alan Garny '' Date: Fri Mar 22 09:41:48 2019 +1300 Only deploy the DLLs we '(may)' really need '(#2041).' commit 8ac92b5665cac03b528f4af8f8fdb45f62667901 Author: Alan Garny '' Date: Fri Mar 22 09:04:29 2019 +1300 Some minor cleaning up. commit 87db62bc22711938d9c26d13464be3cd0333cd84 Author: Alan Garny '' Date: Thu Mar 21 18:02:52 2019 +1300 Windows: update the path to VC++ DLLs '(#2041).' commit 93d7dad797180e143c941f729e0fb763f400ec51 Author: Alan Garny '' Date: Thu Mar 21 17:24:07 2019 +1300 LLVMClang: only build/enable what we want/need '(#2040).' The idea is to use VS 2017 '(see' issue '#2041),' so no need to allow the old toolchain. commit 86e5cfc589aab9af2f63382dc903f7fa75b753fc Author: Alan Garny '' Date: Thu Mar 21 17:18:11 2019 +1300 LLVMClang: only build/enable what we want/need '(#2040).' commit a7c1a3b8bc4ee54d0a6d584f77e693d1475d9f1e Author: Alan Garny '' Date: Thu Mar 21 17:14:10 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 '(#2041).' commit b0b40a92df8a96b37a0512415c7f51b0ae395583 Author: Alan Garny '' Date: Thu Mar 21 16:57:30 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 '(#2041).' commit a9e29318bee0187a907a10f9afd7f2578773bce6 Author: Alan Garny '' Date: Thu Mar 21 16:52:11 2019 +1300 Windows: use Visual Studio 2017 to build OpenCOR '(#2041).' commit e34e8d145a03f6536ff0c677193b3e040c23ada9 Author: Alan Garny '' Date: Thu Mar 21 12:47:06 2019 +1300 LLVMClang: only build/enable what we want/need '(#2040).' commit 2b6d3f0e5ae4e324d50efb3b566d034177c4c504 Author: Alan Garny '' Date: Thu Mar 21 08:51:05 2019 +1300 LLVMClang: allow the '(temporary)' use of MSVC 2015 on Windows '(#2040).' commit f42729c0af70d3572c2b8a2c7be682d1cd7d8cfd Author: Alan Garny '' Date: Thu Mar 21 08:14:30 2019 +1300 LLVMClang: 'don'\''t' include the '(new)' benchmarks '(#2040).' commit 9c724fc92c02f9c81a4b2a38b85f0518484fbb9f Author: Alan Garny '' Date: Thu Mar 21 07:47:33 2019 +1300 LLVMClang: upgrade to version 8.0.0 '(#2040).' commit 624cd66011981e0631d924c3174948aff5bd3cc5 Author: Alan Garny '' Date: Thu Mar 21 07:44:14 2019 +1300 Only build our LLVMClang plugin '(#2040).' commit 3f7e13283ba1b28ca5364db0df61fde8245f0258 Merge: 5af53d478 7da2eff20 Author: Alan Garny '' Date: Tue Mar 19 19:08:36 2019 +1300 Some minor cleaning up. commit 7da2eff201081142d312cc0e69daa744c666945d Author: Alan Garny '' Date: Tue Mar 19 18:51:31 2019 +1300 Some minor cleaning up. commit 5af53d4788963c5cca83fc1dc8c96bc363f319fc Merge: 21a803c33 6192775a3 Author: Alan Garny '' Date: Fri Mar 15 11:12:08 2019 +1300 Some minor cleaning up. commit 6192775a31ff9e065006e2b9ca0a01f679cce8e6 Author: Alan Garny '' Date: Fri Mar 15 10:51:22 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 79d30c7d1671058955bcfe11f4bb7f2d098fef2d Author: Alan Garny '' Date: Fri Mar 15 10:26:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit c49c129bddd93a8c8175134f7d56be4d92ad75a2 Author: Alan Garny '' Date: Fri Mar 15 10:25:35 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a17d71cafcb8994005ca020ee84d5c7e8d1c201d Author: Alan Garny '' Date: Fri Mar 15 10:24:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91dc695c550feaabacb7c0554b8dbcc48ef2a94c Author: Alan Garny '' Date: Fri Mar 15 10:23:08 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 83d4ed8b14d4bccf9a4bf076a409ff4703deb0c4 Author: Alan Garny '' Date: Fri Mar 15 10:22:11 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a1d756af84d4c81a498c347d67016dd6d714f01d Author: Alan Garny '' Date: Fri Mar 15 10:19:55 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b660a9d311abf1505203e4ffde52be2fa5cdb6b3 Author: Alan Garny '' Date: Fri Mar 15 10:16:34 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b7be47b379e48b76dc865741d0d44c44056d52f9 Author: Alan Garny '' Date: Fri Mar 15 10:15:49 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91a2750d1fea075a5aab4ec1e19c7897ee13b89a Author: Alan Garny '' Date: Fri Mar 15 10:14:48 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 24b89a8d979f5bbcc3c5c03ae655a0abaa4c8d6e Author: Alan Garny '' Date: Fri Mar 15 10:07:19 2019 +1300 Make sure that a QDomDocument specifies the encoding when getting serialised. commit a65ef0fdedabf0963072f5f222f17b87743b5ece Author: Alan Garny '' Date: Fri Mar 15 09:30:18 2019 +1300 Some minor cleaning up with regards to our default CellML and SED-ML files. commit 21a803c33683714fa39fc8ce6137a8bbf5c12712 Merge: 4a4987575 47467fb4e Author: Alan Garny '' Date: Thu Mar 14 17:27:05 2019 +1300 Some minor cleaning up. commit 47467fb4e6b4d578a99e5df94490f2ff1dcce20d Author: Alan Garny '' Date: Thu Mar 14 17:08:57 2019 +1300 Some minor cleaning up. commit 05da054a8fd4f656e22e0eb8a30e6bedd81d575c Author: Alan Garny '' Date: Thu Mar 14 16:24:52 2019 +1300 Some minor cleaning up. commit 4a4987575047c8a0ddbecf2c8cf327841062155b Merge: daca9bdf6 eafd51625 Author: Alan Garny '' Date: Thu Mar 14 15:37:08 2019 +1300 Always pass QDomElement objects by reference. commit eafd516257797b521cf0688da3217ff7853bb5d7 Author: Alan Garny '' Date: Thu Mar 14 14:58:35 2019 +1300 Some minor cleaning up. commit 2966200622a775480dd64870e5eb73adb659fcda Author: Alan Garny '' Date: Thu Mar 14 14:26:26 2019 +1300 Always pass QDomElement objects by reference. This adds a bit more code, but it prevents shallow copies, so it ought to be slightly faster, which cannot be a bad thing. commit daca9bdf6da90b83721e322124541f2be8420199 Merge: fe6ca4e69 33e3d9c72 Author: Alan Garny '' Date: Thu Mar 7 19:16:11 2019 +1300 New snapshot. commit 33e3d9c72d810d561da8dcde07646920d38f1be5 Author: Alan Garny '' Date: Thu Mar 7 18:58:42 2019 +1300 New snapshot. commit fe6ca4e69aa17272617ace4ad0f7aaeb581d3c4f Merge: 5b2db996b 469102545 Author: Alan Garny '' Date: Thu Mar 7 18:57:08 2019 +1300 General: 'OpenCOR'\''s' geometry is now properly restored on macOS when there is at least one remote file '(closes' '#2030).' commit 46910254564b39be76235b6d4037a0e0f50364ce Author: Alan Garny '' Date: Thu Mar 7 18:37:44 2019 +1300 Slight update to our downloads page '(#2030).' commit 8c60628a51a77d9b9e04f993a75631117d31c31d Author: Alan Garny '' Date: Thu Mar 7 18:34:34 2019 +1300 General: 'OpenCOR'\''s' geometry is now properly restored on macOS when there is at least one remote file '(#2030).' commit 59ae8a04682b1b0740db223b6eb90c212726476b Author: Alan Garny '' Date: Thu Mar 7 17:57:20 2019 +1300 Some minor cleaning up. commit 5b2db996bbf2fe8393fc1bab04219908aae45495 Merge: 959737424 a914ece78 Author: Alan Garny '' Date: Thu Mar 7 17:28:38 2019 +1300 Merge pull request '#2033' from agarny/issue2032 PMR Workspaces window: make sure that a folder is writable '(closes' '#2032).' commit a914ece785070b7ae1f6062b51973dfddd8d6167 Author: Alan Garny '' Date: Thu Mar 7 16:07:51 2019 +1300 Slight update to our downloads page '(#2032).' commit 6f6a4b43bd0be922d0aab73631dde13d5f29619f Author: Alan Garny '' Date: Thu Mar 7 16:00:37 2019 +1300 Have 'isDirectory()' and 'isEmptyDirectory()' check that a directory is writable '(#2032).' commit 6cbea0850cdc72d21d68258d07f7fe3c8a73c1aa Author: Alan Garny '' Date: Thu Mar 7 15:21:32 2019 +1300 Some minor cleaning up. commit 833670fa8e2523904fd284ae541a7e6135c6158e Author: Alan Garny '' Date: Thu Mar 7 15:20:51 2019 +1300 Let people know if we chose a folder that is not writable '(#2032).' commit f347dff49b49cb69d3151c47a1a28744e788a09f Author: Alan Garny '' Date: Thu Mar 7 14:03:42 2019 +1300 Have 'isDirectory()' and 'isEmptyDirectory()' check that a directory is writable '(#2032).' commit 95973742412c2cab506acd3be1ac06823127856e Merge: 7611fbcc8 5933f993e Author: Alan Garny '' Date: Thu Mar 7 11:42:25 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files '(closes' '#2028).' commit 5933f993eadd074afeededecd11039e17d435c2e Author: Alan Garny '' Date: Thu Mar 7 10:01:09 2019 +1300 Slight update to our downloads page '(#2028).' commit deb7e900282fa1a0ce51c111cab833014e79721e Author: Alan Garny '' Date: Thu Mar 7 09:59:57 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files '(#2028).' commit 7611fbcc8bd0674d008bab856322dec1c0c20825 Merge: a870b10c9 7d58dbac9 Author: Alan Garny '' Date: Thu Mar 7 09:28:04 2019 +1300 Some minor cleaning up. commit 7d58dbac9483f053a27caf907fd54adb728e7487 Author: Alan Garny '' Date: Thu Mar 7 08:57:12 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. $'That\342\200\231s' because we disable OpenCOR '(when' downloading a remote 'file),' meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit aba3efab3839693f8fb0fc229546d6c4e9b0a7c9 Author: Alan Garny '' Date: Thu Mar 7 08:56:41 2019 +1300 Revert '"Graph' Panel widget: use original colours only if they have been 'set."' This reverts commit 5059b54eb4859404936fdf2a25c70b2d4a11594b. commit 5059b54eb4859404936fdf2a25c70b2d4a11594b Author: Alan Garny '' Date: Thu Mar 7 08:55:23 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. $'That\342\200\231s' because we disable OpenCOR '(when' downloading a remote 'file),' meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit 34df20bea38cb1e80e88c7274c0514d5283d234b Author: Alan Garny '' Date: Thu Mar 7 08:52:04 2019 +1300 SynchronousFileDownloader class: fixed a small memory leak. commit f11ff0cf8feb276a84cc9b2575940d74b2e6f922 Author: Alan Garny '' Date: Thu Mar 7 08:51:32 2019 +1300 Some minor cleaning up. commit b9791c378413546fa822498051d1c3fdfc38ca5a Author: Alan Garny '' Date: Thu Mar 7 08:49:56 2019 +1300 Some minor cleaning up. commit 7a8ddc9989d538df97a7e44bc485cabccb0529ba Author: Alan Garny '' Date: Thu Mar 7 08:49:40 2019 +1300 Some minor cleaning up. commit a870b10c95c5958ff0aa3210d5923176e767d427 Merge: 53d60e0ac 76caf82b9 Author: Alan Garny '' Date: Tue Mar 5 17:31:37 2019 +1300 New snapshot. commit 76caf82b96cf865b3eab27b885a66bc9bf51c4ac Merge: d6a8690fe 53d60e0ac Author: Alan Garny '' Date: Tue Mar 5 17:08:15 2019 +1300 Merge remote-tracking branch ''\''opencor/master'\''.' commit 53d60e0ac2dea4d93de30dae85808f3dfd33ba44 Merge: 60c09567a f92a2e0c8 Author: Alan Garny '' Date: Tue Mar 5 17:07:59 2019 +1300 Some minor cleaning up. commit d6a8690feaa4b08de969021d2babaf90d3183b98 Author: Alan Garny '' Date: Tue Mar 5 16:57:28 2019 +1300 New snapshot. commit f92a2e0c88cf5864155648a5fba94516c067945e Author: Alan Garny '' Date: Tue Mar 5 16:40:19 2019 +1300 Some minor cleaning up. commit e53cf8af1779784fc712e99333dc678e95ef748f Author: Alan Garny '' Date: Tue Mar 5 15:56:30 2019 +1300 Some minor cleaning up. commit 7890a50c89d9cb722bd4d539bb48cc73cf31fbfa Author: Alan Garny '' Date: Tue Mar 5 15:37:44 2019 +1300 PMR support: reset the contents of our web browser when reusing it. commit ec7dbd8759d7184e37ae4ed5b1f174829c461edf Author: Alan Garny '' Date: Tue Mar 5 15:29:08 2019 +1300 Some minor cleaning up. Put this piece of code where it used to be since it used to be working fine that way. commit 4e6e4308efbf77af2ca4bef1f3709453dade9222 Author: Alan Garny '' Date: Tue Mar 5 15:16:43 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct '(and' applied when we were connected to 'PMR).' Yet, 'it'\''s' better to set mInitialized in 'PmrWorkspacesWindowWindow::loadSettings()' and check for it in 'PmrWorkspacesWindowWindow::busy().' commit 41f6d7f27322787c87f8c9d4b84851848ee191c1 Author: Alan Garny '' Date: Tue Mar 5 15:12:03 2019 +1300 Some minor cleaning up. commit 6722c611720ee301282d707f55ee7cff467538f9 Author: Alan Garny '' Date: Tue Mar 5 15:04:31 2019 +1300 Some minor cleaning up. commit 23ab11066bc9bfca9fc2274f604471e44c2d4ac9 Author: Alan Garny '' Date: Tue Mar 5 15:04:21 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct '(and' applied when we were connected to 'PMR).' Yet, 'it'\''s' better to set mInitialized in 'PmrWorkspacesWindowWindow::loadSettings()' and check for it in 'PmrWorkspacesWindowWindow::busy().' commit 60c09567a028e54517c6480866562eec0767b764 Merge: 617817b71 e19a83854 Author: Alan Garny '' Date: Mon Mar 4 17:44:37 2019 +1300 Simulation Experiment view: make some widgets look properly disabled when they are '(closes' '#2022).' commit e19a83854690cfa572fd98cc2ffa5387c7e3a592 Author: Alan Garny '' Date: Mon Mar 4 17:22:23 2019 +1300 Slight update to our downloads page '(#2022).' commit 3550be10f6fbb4ff560c06e0e831b007ccf3a605 Author: Alan Garny '' Date: Mon Mar 4 17:11:09 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 33e6a5e2a550c857051a2cad382d6b8184793c45 Author: Alan Garny '' Date: Mon Mar 4 16:47:21 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 64191f6a3d7e028d76b7fce124c1c0a87e3a8684 Author: Alan Garny '' Date: Mon Mar 4 16:40:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 8c9c7c27238b27ec528dc7c382553d082c97676f Author: Alan Garny '' Date: Mon Mar 4 15:39:02 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit cfa0c36de1197a22ecf20ed85c48d1be19b545bb Author: Alan Garny '' Date: Mon Mar 4 15:22:11 2019 +1300 Some minor cleaning up. commit 8c42a54ac3ed1068a425f417b5790fa900fb92e3 Author: Alan Garny '' Date: Mon Mar 4 14:12:42 2019 +1300 Some minor cleaning up. commit 7e707cdd1165049bf9d4a1d17924cfdba0694fe8 Author: Alan Garny '' Date: Mon Mar 4 13:24:20 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 13bb03286628aad9cbacc5844d612483b76c3975 Author: Alan Garny '' Date: Mon Mar 4 13:20:18 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 61e9db65f7111d1eac1354a987331d264ff52131 Author: Alan Garny '' Date: Mon Mar 4 13:16:25 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit 71f4d0ab6733712f610008ca50a26cf153e46eaf Author: Alan Garny '' Date: Mon Mar 4 13:15:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be '(#2022).' commit ecd372efe6183bbe5c3d44defd2a8934c670bac8 Author: Alan Garny '' Date: Mon Mar 4 12:44:28 2019 +1300 Some minor cleaning up. commit c0b7cb0046907e5397979c524fdd9e152460697d Author: Alan Garny '' Date: Mon Mar 4 12:22:50 2019 +1300 Some minor cleaning up. commit e94e76f04ada110f135e17c7a151de7c3a71fa1c Author: Alan Garny '' Date: Mon Mar 4 12:22:34 2019 +1300 Graph Panel widget: the marker now looks fully disabled when it should be '(#2022).' commit f1925939eeb0c49e413c64f9b3313195fbf2c30e Author: Alan Garny '' Date: Mon Mar 4 11:22:49 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be '(#2022).' commit 603064c85cd2c25fc69325069434630f430e06df Author: Alan Garny '' Date: Mon Mar 4 10:46:31 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be '(#2022).' commit 617817b71d054ebf9b9e058ee5b1b1a89200ad20 Merge: ac9808fee b992c92b0 Author: Alan Garny '' Date: Mon Mar 4 09:40:11 2019 +1300 CSV data store: improved our detection of CSV files '(closes' '#2019).' commit b992c92b06d9c314213005759736942844b4664b Author: Alan Garny '' Date: Mon Mar 4 09:19:03 2019 +1300 CSV data store: improved our detection of CSV files '(#2019).' commit ac9808feed93bd8662f4de809c7926609d27b2cf Merge: cd842ab28 2c2b44813 Author: Alan Garny '' Date: Sat Mar 2 19:44:40 2019 +1300 CSV data store: improved our detection of CSV files '(closes' '#2019).' commit 2c2b4481305a4edb33be583ca55a1254443a51bb Author: Alan Garny '' Date: Sat Mar 2 19:25:54 2019 +1300 Slight update to our downloads page '(#2019).' commit 7323b57c8e5bbfe3ed25a67e8cc925fd67b1773f Author: Alan Garny '' Date: Sat Mar 2 19:12:01 2019 +1300 CSV data store: improved our detection of CSV files '(#2019).' commit 404b67f099065250d1c9e83b7ba7ad29b8ba8eb2 Author: Alan Garny '' Date: Sat Mar 2 19:09:47 2019 +1300 Some minor cleaning up. commit cd842ab285cea17bc52f89b62642ebbb98395a3e Merge: 74a9bfc5c af5468e74 Author: Alan Garny '' Date: Sat Mar 2 17:28:19 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit af5468e74615c9405c398c70de71533a947884a1 Author: Alan Garny '' Date: Sat Mar 2 16:33:08 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit 74a9bfc5c494202ef3590286b5c1860785daa6ad Merge: adf051735 2e8bec830 Author: Alan Garny '' Date: Fri Mar 1 19:45:01 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit 47481028594fa6be438298267d21ff57aaaa902a Merge: a7a4da910 adf051735 Author: Alan Garny '' Date: Fri Mar 1 18:40:31 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 2e8bec830409b7a3bf37ab777e774de133762966 Author: Alan Garny '' Date: Fri Mar 1 18:17:52 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit adf051735fce48f388041c8b0b6cded979b72666 Merge: 7f64eed2e 9eec930ed Author: Alan Garny '' Date: Fri Mar 1 16:09:41 2019 +1300 Some minor cleaning up. commit 9eec930ed78cbaf1e48d67069ddb283fa53445f5 Author: Alan Garny '' Date: Fri Mar 1 15:38:42 2019 +1300 Simulation Experiment view: make sure that we retrieve the value of a list property as a string. Indeed, this is what our solvers need to set $'themselves\342\200\246' See 'CvodeSolver::initialize()' for $'example\342\200\246' commit c6ad1fbba98500c6ab043a81094868be62776ac1 Author: Alan Garny '' Date: Fri Mar 1 15:23:43 2019 +1300 Some minor cleaning up. commit 3f71cd67354afe9f7330acc335f1fe0bd4e370b5 Author: Alan Garny '' Date: Fri Mar 1 14:56:34 2019 +1300 Some minor cleaning up. commit 7f64eed2e88bdffd98c85b5dc0d364a5ff3288b9 Merge: 54a869e94 43fcc06ab Author: Alan Garny '' Date: Fri Mar 1 09:51:00 2019 +1300 KaTeX: upgraded to version 0.10.1 '(closes' '#2014).' commit 43fcc06ab03aaaac4950b71713438839a7320f52 Author: Alan Garny '' Date: Fri Mar 1 09:30:56 2019 +1300 Slight update to our downloads page '(#2014).' commit 54a869e94f901b7e085669c2483332cde7721641 Merge: 5911d5960 37f59d2ee Author: Alan Garny '' Date: Thu Feb 28 18:46:08 2019 +1300 URI scheme: added the '`importFile`' and '`importFiles`' commands '(closes' '#2000).' commit 37f59d2ee9330bd56b3f48da86a1018fe593f95c Author: Alan Garny '' Date: Thu Feb 28 18:28:36 2019 +1300 Some minor cleaning up. commit c31262f28aa393d122b089de7691daa1ab88f7c2 Author: Alan Garny '' Date: Thu Feb 28 18:17:16 2019 +1300 Slight update to our downloads page '(#2000).' commit be5315f77c97bce23b633cbbc352e730278815a6 Author: Alan Garny '' Date: Thu Feb 28 17:56:54 2019 +1300 Some minor cleaning up. commit fdc721d25c5d7165a8e61de963292f9fc8929c0b Author: Alan Garny '' Date: Thu Feb 28 17:49:52 2019 +1300 Can now import a remote file / some remote files '(#2000).' commit 90727ec533142c6653c431f410649a7224170ae1 Author: Alan Garny '' Date: Thu Feb 28 16:41:06 2019 +1300 Some minor cleaning up. commit 91aacd4ceafcc1ddc887a761b4d636325b1cd311 Merge: 6f783a9e1 d2dc0c815 Author: Alan Garny '' Date: Thu Feb 28 14:37:30 2019 +1300 Merge remote-tracking branch ''\''origin/issue2000'\''' into issue2000 commit 6f783a9e10829dd18caaa7c25044688906910c4d Merge: f8028a73a 5911d5960 Author: Alan Garny '' Date: Thu Feb 28 14:35:11 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit 5911d5960d6cbf51dfaff38487aa24c513afeaa5 Merge: dba00265b 21e33f9d1 Author: Alan Garny '' Date: Thu Feb 28 14:16:42 2019 +1300 Some minor cleaning up. commit d2dc0c8152abc4beeb114ac3a598088b4bf0f5cc Author: Alan Garny '' Date: Thu Feb 28 11:50:43 2019 +1300 Some minor cleaning up. commit 21e33f9d18da17a8578ee8ef1eabaa1dc1e50d6f Author: Alan Garny '' Date: Thu Feb 28 11:49:41 2019 +1300 Simulation Experiment view: import files one after the other. Until now, we were importing in parallel, but this $'won\342\200\231t' work for issue '#2000,' so now do it one after the other. commit 97f19824dad16213d54f64c377a605cae8ebbf2f Author: Alan Garny '' Date: Thu Feb 28 11:20:12 2019 +1300 Some minor cleaning up. commit d072576e5ee90da1d9570606979b5c47934f249e Author: Alan Garny '' Date: Thu Feb 28 10:59:10 2019 +1300 Some minor cleaning up. commit 06c611a0ec4399d16ad348d29843e418fdaf0f94 Author: Alan Garny '' Date: Thu Feb 28 10:58:53 2019 +1300 Some minor cleaning up. commit f4dc8519a21a41e6f07b26e01a422908173d1183 Author: Alan Garny '' Date: Thu Feb 28 10:58:37 2019 +1300 Some minor cleaning up. commit 563eaa790882ae359243f411df7ae136c3a66ff2 Author: Alan Garny '' Date: Thu Feb 28 10:58:14 2019 +1300 Some minor cleaning up. commit 3739957d3fc6ff519445472fe0f4fdcd45b8f37a Author: Alan Garny '' Date: Thu Feb 28 10:14:06 2019 +1300 Some minor cleaning up. mViews is not used as such, so no point in keeping it. As a result, we can also remove 'viewKey().' commit d25bf0fcd6879d288a71f049497d0966ec856d30 Author: Alan Garny '' Date: Thu Feb 28 10:13:12 2019 +1300 Some minor cleaning up. commit 5ed9b0e529d21fa62928bb0d968358832d61f751 Author: Alan Garny '' Date: Thu Feb 28 10:12:52 2019 +1300 Some minor cleaning up. commit 9e8727e9fc2e09001c70dcc845c2095ed0111eaf Author: Alan Garny '' Date: Thu Feb 28 10:12:31 2019 +1300 Some minor cleaning up. commit 6609d5537ee0a8d782f41e5e243922ec9b472821 Author: Alan Garny '' Date: Thu Feb 28 10:09:08 2019 +1300 Some minor cleaning up. commit 00a16b11b28692a784063774118ca91999dda88c Author: Alan Garny '' Date: Thu Feb 28 10:08:54 2019 +1300 Core interface: renamed 'handleArguments()' to 'openFile().' Indeed, to handle arguments effectively results into opening files, $'so\342\200\246' commit f8028a73a7e3951e6732b51d0ed3db600d0a431a Merge: 0744b742c dba00265b Author: Alan Garny '' Date: Wed Feb 27 18:33:24 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit dba00265b5b0ef59a27fe764d1705504c88df24c Merge: fbd7917b6 235a1d4bc Author: Alan Garny '' Date: Wed Feb 27 18:32:39 2019 +1300 OpenSSL: upgraded to version 1.0.2r '(closes' '#2009).' commit 235a1d4bc2ddf873c6c550fbd0d3247d5033e748 Author: Alan Garny '' Date: Wed Feb 27 18:16:07 2019 +1300 Slight update to our downloads page '(#2009).' commit 4b76ebc0817b8b7862f064c464d711d5b6d02dce Author: Alan Garny '' Date: Wed Feb 27 18:15:00 2019 +1300 OpenSSL: binaries for version 1.0.2r '(#2009).' commit 43a5dc27627856d57d9b5d3571e28bb7245bdc39 Author: Alan Garny '' Date: Wed Feb 27 18:01:13 2019 +1300 Revert '"Only' build OpenSSL '(#2009)."' This reverts commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd. commit d3c361c6a7e99d39ee96f2123ce7cfba80bfa1fa Author: Alan Garny '' Date: Wed Feb 27 17:43:57 2019 +1300 OpenSSL: upgraded to version 1.0.2r '(#2009).' commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd Author: Alan Garny '' Date: Wed Feb 27 17:43:04 2019 +1300 Only build OpenSSL '(#2009).' commit 0744b742cdf3abf4f2749d496cbb39619099d9b0 Author: Alan Garny '' Date: Wed Feb 27 17:31:51 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit 5341b55f5f516c52dd19ab0fd0fba6b127dfaccd Merge: 412a9cf17 fbd7917b6 Author: Alan Garny '' Date: Wed Feb 27 17:25:50 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit fbd7917b6c59d3c56456b5fce6e9a9aaa32ea995 Merge: ed60768e0 15c19df28 Author: Alan Garny '' Date: Wed Feb 27 17:07:33 2019 +1300 A lot of '(minor)' cleaning up. commit 15c19df2814ef19b7c54f5b32c1f65add7ee5e46 Author: Alan Garny '' Date: Wed Feb 27 16:31:06 2019 +1300 Some minor cleaning up. commit c186ee7a4ba8e3e1ad8f33b828af9aafdc85e456 Author: Alan Garny '' Date: Wed Feb 27 16:08:58 2019 +1300 Some minor cleaning up. commit 3e2057ff0e06499165591dd46b8a01dc0618f9c3 Author: Alan Garny '' Date: Wed Feb 27 16:00:22 2019 +1300 Some minor cleaning up. commit 33b15170900a97299cab6ee35e1cdc4e5c96bbe6 Author: Alan Garny '' Date: Wed Feb 27 15:42:37 2019 +1300 Some minor cleaning up. Finally able to minimise our Dialog class to the bare minimum '(now' that all our Dialog-derived classes are doing things right with regards to 'QSettings)!' commit dfd31d75982e3aea0f3fb02394098c5070aa835a Author: Alan Garny '' Date: Wed Feb 27 15:25:17 2019 +1300 PMR support: now have a dedicated PmrWebViewerDialog class. commit d1b6d04c3f83dc824e4374c9890ffe9808a39b71 Author: Alan Garny '' Date: Wed Feb 27 11:01:15 2019 +1300 Core plugin: now have a dedicated RemoteFileDialog class. The idea is two-fold. First, we want to be able to reuse that dialog '(e.g.' in issue '#2000)' and, second, we want to improve our use of QSettings. commit 24db0db87f868dc98eb1508f5bdf1bd01b632004 Author: Alan Garny '' Date: Wed Feb 27 09:45:24 2019 +1300 Some minor cleaning up. commit 499b07c6531b80eb8d2bb1484a03188965d8eb93 Author: Alan Garny '' Date: Wed Feb 27 09:41:47 2019 +1300 Some minor cleaning up. commit 422d82c355b1be0faa91539127a9eed3093d6d85 Author: Alan Garny '' Date: Tue Feb 26 19:02:43 2019 +1300 PMR Workspaces window: slight improvement. commit f3cdcd55cc4ef92fdd47e4ffaa66f732dea2d0c4 Author: Alan Garny '' Date: Tue Feb 26 18:15:28 2019 +1300 Some minor cleaning up. commit 7e54d4dcc6ea57db2c3fc74795d3889e807373cc Author: Alan Garny '' Date: Tue Feb 26 18:09:50 2019 +1300 Some minor cleaning up. commit cd428fbc270ae1eaff88165d3e8c7ddb7b2bfcf2 Author: Alan Garny '' Date: Tue Feb 26 18:06:17 2019 +1300 Some minor cleaning up. commit 7ac677027a179c20de738eb12c54cb734548c932 Author: Alan Garny '' Date: Tue Feb 26 17:54:26 2019 +1300 Some minor cleaning up. commit 64c797aa3f601af616a6f8071de2b40b909b154a Author: Alan Garny '' Date: Tue Feb 26 17:42:04 2019 +1300 Some minor cleaning up. commit cb79808f45e17faed040b09ddbae9540acfdb407 Author: Alan Garny '' Date: Tue Feb 26 17:14:44 2019 +1300 Some minor cleaning up. commit 1993fae7ed798ed2d54ea1e9a2e5419f578ad5c3 Author: Alan Garny '' Date: Tue Feb 26 17:04:07 2019 +1300 Some minor cleaning up. commit 35b155c80a724c92f9521dee95d4854ca68a3e61 Author: Alan Garny '' Date: Tue Feb 26 16:32:39 2019 +1300 Slight improvement to our Plugin interface. commit a3918ae74c39c3e8b53508283de464b370633373 Author: Alan Garny '' Date: Tue Feb 26 16:22:05 2019 +1300 Some minor cleaning up. commit 41c4d9c5ad9222d6fa9d95f900ee17719531a170 Author: Alan Garny '' Date: Tue Feb 26 16:18:21 2019 +1300 Some minor cleaning up. commit ee07d92d7c0448341be760f65583a4e2980e1706 Author: Alan Garny '' Date: Tue Feb 26 14:18:27 2019 +1300 Some minor cleaning up. commit 43ea03aaed85164b26f32cd0af417a6e2851fb17 Author: Alan Garny '' Date: Tue Feb 26 14:07:13 2019 +1300 Some minor cleaning up. commit 7b68d5d29cde0773561fb09f2321b34ab2e02d6c Author: Alan Garny '' Date: Tue Feb 26 14:04:53 2019 +1300 Some minor cleaning up. commit ab9ffa532bc9c7764764637427a2f57b3dfaab2d Author: Alan Garny '' Date: Tue Feb 26 14:00:04 2019 +1300 Some minor cleaning up. commit 033db16222b18cb0224e58c5e51fa50656d4421f Author: Alan Garny '' Date: Tue Feb 26 13:59:47 2019 +1300 Some minor cleaning up. commit 412a9cf178e63d52c5f94c717f48113a5f5abdaa Merge: dfa64d78f ed60768e0 Author: Alan Garny '' Date: Tue Feb 26 09:58:10 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit ed60768e0087185265209baec912eab7689b18df Merge: ed512790b ea3014f56 Author: Alan Garny '' Date: Tue Feb 26 09:56:31 2019 +1300 Some minor cleaning up. commit ea3014f56ddad17def52b6c10a1cc013c44f0516 Author: Alan Garny '' Date: Tue Feb 26 09:37:54 2019 +1300 Some minor cleaning up. commit dfa64d78f289f90af5922807ea90629d1e1ab7d8 Author: Alan Garny '' Date: Mon Feb 25 18:42:11 2019 +1300 Some minor cleaning up. commit e5905d995f5b894c3a38ed49b9c9a6018e3e316c Author: Alan Garny '' Date: Mon Feb 25 18:03:08 2019 +1300 Made our Open Remote File dialog generic '(#2000).' commit e45beb7ab4a3f063e3ac5310d46a08f0e667fa41 Merge: 28cf9a1cd ed512790b Author: Alan Garny '' Date: Mon Feb 25 17:45:14 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit ed512790b9eb35b99aecebd1301b95479470e77f Merge: cba61001d 4483b317e Author: Alan Garny '' Date: Mon Feb 25 17:44:25 2019 +1300 Some minor cleaning up. commit 4483b317e74a84d8431ecd3385c3c06562e6d166 Author: Alan Garny '' Date: Mon Feb 25 17:22:48 2019 +1300 Some minor cleaning up. commit 28cf9a1cd39e4bc4733f1630fd1f6d002972bbe9 Merge: 282ed6610 cba61001d Author: Alan Garny '' Date: Mon Feb 25 17:10:42 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit cba61001de4ef6aee7d82093f44b6e4e07b45f7f Merge: cfe005cea e0b62a74f Author: Alan Garny '' Date: Mon Feb 25 17:09:17 2019 +1300 Some minor cleaning up. commit e0b62a74f494ccd48d2e574d7d3cf63aa5bee1d3 Author: Alan Garny '' Date: Mon Feb 25 16:51:41 2019 +1300 Some minor cleaning up. commit edb73d790facce312a5383fe1bfea4bed0e85424 Author: Alan Garny '' Date: Mon Feb 25 16:30:12 2019 +1300 Some minor cleaning up. commit f9b104bd6ba3a3f862f2ec68c172305c5d7a2f39 Author: Alan Garny '' Date: Mon Feb 25 16:17:47 2019 +1300 PMR Workspaces window: simplified our use of QSettings for our diff dialog. commit 6a5151fd68bee74420fe2b0758d695173b0c6465 Author: Alan Garny '' Date: Mon Feb 25 15:50:33 2019 +1300 Data store based dialogs: simplified our use of QSettings. commit 282ed6610c20f74a27b8c24422f50a7e6c2f25c5 Merge: ca5ce3fb6 cfe005cea Author: Alan Garny '' Date: Mon Feb 25 12:57:19 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit cfe005ceaa4fce8fd64746d30349521fa0fca12e Merge: 0ffded4cf 6f8812fbd Author: Alan Garny '' Date: Mon Feb 25 12:56:37 2019 +1300 Some minor cleaning up. commit 6f8812fbd4f9c159ba0ab1c633754ffd0d4a0297 Author: Alan Garny '' Date: Mon Feb 25 11:57:05 2019 +1300 BioSignalML data store: open BioSignalML files in read-only mode unless we need to create/update them. This is particularly import for 'BioSignalMLDataStorePlugin::isFile()' since calling 'bsml::HDF5::Recording()' in read-write mode will eventually result in the BioSignalML file being modified '(when' we delete the 'recording).' In turn, this means that its SHA-1 value will be different, resulting in OpenCOR telling us that the BioSignalML file has been modified while it actually $'hasn\342\200\231t' been. commit 629cf2a6a1b76c0077654703af0f24d6af83d12d Author: Alan Garny '' Date: Mon Feb 25 10:46:25 2019 +1300 Some minor cleaning up. commit 2c291865e28814731f340fb78f8f83a5ff7fbc42 Author: Alan Garny '' Date: Mon Feb 25 10:17:51 2019 +1300 Some minor cleaning up. commit ca5ce3fb625d1034b0264c5f133d9afc41428292 Merge: 0625d3a93 0ffded4cf Author: Alan Garny '' Date: Sat Feb 23 10:51:05 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit 0ffded4cfda069e182d8eceacd63312c62e5fe73 Merge: ba9fba3ae 2d89847e8 Author: Alan Garny '' Date: Sat Feb 23 10:50:21 2019 +1300 Some minor cleaning up. commit 2d89847e8a89f7d4cbb9c0292cf3f347e5f84030 Author: Alan Garny '' Date: Sat Feb 23 10:28:46 2019 +1300 Slight improvement to our 'fileSha1()' method. commit 9b9212ba980b978f1f380d69a0ec91df0d7d9b13 Author: Alan Garny '' Date: Sat Feb 23 10:13:44 2019 +1300 Slight improvement to our 'fileSha1()' method. commit 55134b621e5d2d406fd7a04847b10f2c873d4fd8 Author: Alan Garny '' Date: Sat Feb 23 10:13:15 2019 +1300 Some minor cleaning up. commit 0625d3a93047cba2f9e242da771dcc713282cfd2 Merge: c34ad6165 ba9fba3ae Author: Alan Garny '' Date: Fri Feb 22 18:56:22 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit ba9fba3ae782a65359510fc4afd859d9bfbcdce3 Merge: 786b0cc42 ba207a088 Author: Alan Garny '' Date: Fri Feb 22 18:41:44 2019 +1300 Improved our computation of the SHA-1 value of a file. commit ba207a088dfadd3d71e56b10bf6ecaea165b10c8 Author: Alan Garny '' Date: Fri Feb 22 16:10:33 2019 +1300 Improved our computation of the SHA-1 value of a file. commit c34ad6165f3bbd38c5ee8da6189785ae0237758e Merge: 559e83f0a 786b0cc42 Author: Alan Garny '' Date: Fri Feb 22 13:15:44 2019 +1300 Merge branch ''\''master'\''' into issue2000. commit 786b0cc42b023ac7a7c34c0ca93789b61166513c Merge: d1c5a06f4 aeae3b13e Author: Alan Garny '' Date: Fri Feb 22 13:13:19 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages '(closes' '#2001).' commit 559e83f0a677dc6845bf48beb1dffbb1a4940ec7 Author: Alan Garny '' Date: Fri Feb 22 13:04:32 2019 +1300 Some minor cleaning up. commit c5112eff5eaf64002a93c39d2f8df1a80108d890 Author: Alan Garny '' Date: Fri Feb 22 12:50:06 2019 +1300 Some minor cleaning up. commit aeae3b13ebfd5cff65edb7000f1ff9ea07c2fdae Author: Alan Garny '' Date: Fri Feb 22 12:30:50 2019 +1300 Some minor cleaning up. commit 0956211763398784d829ac8bda82dfe7b81158b4 Author: Alan Garny '' Date: Fri Feb 22 12:29:50 2019 +1300 Slight updates to our downloads and what is new pages '(#2000).' commit b0fb49894bc6a748ff7f76fc7111f615eab7c489 Author: Alan Garny '' Date: Fri Feb 22 12:19:24 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages '(#2001).' commit ca3fcaf5b288ebd23626c4f01b2092812637ae52 Author: Alan Garny '' Date: Fri Feb 22 11:29:00 2019 +1300 Simulation Experiment view: now have a drop-down menu to import either local or remote data files '(#2000).' commit 1e77155ed3eb616498e6e00d66145ef058d65602 Author: Alan Garny '' Date: Fri Feb 22 10:59:48 2019 +1300 Some minor cleaning up. commit 942f8a5758deb38559fbd921630c87f0509b9239 Author: Alan Garny '' Date: Fri Feb 22 10:58:58 2019 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit cdcb637b04b137df3c4bbb9000d20e018e988159. commit cdcb637b04b137df3c4bbb9000d20e018e988159 Author: Alan Garny '' Date: Fri Feb 22 10:57:22 2019 +1300 Some minor cleaning up. commit e7faa3ce0595994f4ee4ca618349e066425426de Author: Alan Garny '' Date: Fri Feb 22 10:19:26 2019 +1300 Simulation Experiment view: 'don'\''t' generate a warning if we try to drop a non-data file on our view '(#2000).' commit b27c7fbefcf1fd96595dd873adf3a65a5a05f7f5 Author: Alan Garny '' Date: Thu Feb 21 13:50:31 2019 +1300 Some minor clarifications. Re the data store importer/exporter, if we were not to pass Qt::UniqueConnection, then if we want to import n signals, then the first time we would do that, we would indeed get n signals imported, but the second time we would get 2n of them, the third time 3n, etc. hence the need to pass Qt::UniqueConnection. commit ecde31758d01666dd1efa387d08fb9d3e2801b5b Author: Alan Garny '' Date: Thu Feb 21 08:26:13 2019 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit a3c5d1496cdbb83b8e89169283434cda8b18abcd. commit 3dc5e8939cd3cc4c22f1e22ed26239bdaf5a38e9 Author: Alan Garny '' Date: Wed Feb 20 18:53:56 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit 8590dfad153b6ae66ce62b8d5a0aad296cd9fe11 Author: Alan Garny '' Date: Wed Feb 20 18:46:03 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit 1c60f14a497cc701369eebd950f8d2b735dcb3a6 Author: Alan Garny '' Date: Wed Feb 20 18:36:09 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit 59e5a82f4b95e99d6249ffb1435d0ca169f31484 Author: Alan Garny '' Date: Wed Feb 20 18:27:03 2019 +1300 Common widget: move some methods to the public slots section. commit bced9ca0274b2b49c3aca99668edcceb69f0e45f Author: Alan Garny '' Date: Wed Feb 20 18:12:43 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit a3c5d1496cdbb83b8e89169283434cda8b18abcd Author: Alan Garny '' Date: Wed Feb 20 18:12:28 2019 +1300 Some minor cleaning up. commit 7a20b5827daca511492b34c8a759665d409e1162 Author: Alan Garny '' Date: Wed Feb 20 17:59:49 2019 +1300 Some minor cleaning up. commit 23be390f9ab0ccdb828f8983c0adc8e913b0f536 Author: Alan Garny '' Date: Wed Feb 20 17:53:16 2019 +1300 Some minor cleaning up. commit 5eab6b1dc7c53f84ba882ff1c58431ea51c11631 Author: Alan Garny '' Date: Wed Feb 20 17:51:40 2019 +1300 Some minor cleaning up. commit 32d8e150a6806f7cb7dc69528d3e5c183ad5b91a Author: Alan Garny '' Date: Wed Feb 20 17:46:55 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit c4813e38c6e391095424a0bb1f795784907caa59 Author: Alan Garny '' Date: Wed Feb 20 16:55:38 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only '(#2000).' commit 94ce0757902dbd5f15ac637195b577b250e9826d Author: Alan Garny '' Date: Wed Feb 20 16:45:13 2019 +1300 Simulation Experiment: can import one file at a time using our new URI scheme '`importFile`' command '(#2000).' commit 59140f0f2ebe7fdbdb23d7379c77db9662481977 Author: Alan Garny '' Date: Wed Feb 20 16:42:57 2019 +1300 Some minor cleaning up. commit 17f0ed6a663468213cf4005e6e77f62f49cf3bb2 Author: Alan Garny '' Date: Wed Feb 20 15:14:16 2019 +1300 Central widget: ask the current view to import a given file or, failing that, open it as a normal file '(#2000).' commit d11773c99da31ffec6d50c1e0f1af84e9ad1ed21 Author: Alan Garny '' Date: Wed Feb 20 14:49:17 2019 +1300 Central widget: some minor cleaning up. We $'don\342\200\231t' make use of mViews '(anymore?),' so no point in still using it. Then, as a result, we $'don\342\200\231t' need 'viewKey()' anymore either. commit 4c645beee3b3acfd983db84b41949a291e29ef28 Author: Alan Garny '' Date: Wed Feb 20 14:38:38 2019 +1300 Core plugin: forward to our central widget our wish to import a file '(#2000).' commit f38b79e1ad45182bfc182ca6bfc22172abefc972 Author: Alan Garny '' Date: Wed Feb 20 14:33:58 2019 +1300 Some minor cleaning up. commit a234a23bfd099fcb368679a229696f0046d57d3d Author: Alan Garny '' Date: Wed Feb 20 14:21:28 2019 +1300 Main window: added support for the '`importFile`' and '`importFiles`' URI scheme commands '(#2000).' commit 74d2f11569e16a1aba3ffec48db92feb142e5d1f Author: Alan Garny '' Date: Wed Feb 20 13:22:17 2019 +1300 Core interface: renamed '`handleArguments()`' to '`openFile()`' '(#2000).' Indeed, the only arguments that our Core plugin should handle are file names to open, $'so\342\200\246' commit b33675b6bb48803ec85c228e89b9e7b964c63145 Author: Alan Garny '' Date: Wed Feb 20 11:30:12 2019 +1300 Some minor cleaning up. commit 628a4ecc7a731613c2f0b1915e7ac0bcc6fae5a5 Author: Alan Garny '' Date: Wed Feb 20 10:25:23 2019 +1300 Some minor cleaning up. commit 2e61f6798978e6c5a9a956951c009a27debf43e6 Author: Alan Garny '' Date: Wed Feb 20 09:59:57 2019 +1300 File Handling interface: added a new 'importFile()' method '(#2000).' commit d1c5a06f4a46b568b45889c15c99843e451b779b Merge: 104887509 1f7667da0 Author: Alan Garny '' Date: Tue Feb 19 20:57:59 2019 +1300 Slight update to our downloads page '(#1991).' commit 1f7667da0aaba974c9bf4716e6f2c98e10d35392 Author: Alan Garny '' Date: Tue Feb 19 19:32:10 2019 +1300 Slight update to our downloads page '(#1991).' commit 104887509502e54df9c163fa7cd37dadffdbd529 Merge: d1bd9cb5c 71dc6870b Author: Alan Garny '' Date: Tue Feb 19 19:22:28 2019 +1300 libgit2: upgraded to version 0.28.1 '(closes' '#1993).' commit 71dc6870bc71e07442bac70773200f9f8ee0eb86 Author: Alan Garny '' Date: Tue Feb 19 19:05:04 2019 +1300 PMR support: use new libgit2 constants/methods '(#1993).' commit 8aa576318e20711338084d9411a07b93f1f4dc7b Author: Alan Garny '' Date: Tue Feb 19 18:56:51 2019 +1300 'Don'\''t' only build libgit2 '(#1993).' commit 834017ed35aff6f644e672de88356f1836490b9d Author: Alan Garny '' Date: Tue Feb 19 18:56:08 2019 +1300 Slight update to our downloads page '(#1993).' commit 67f594664451993f03feb5391b0cbefc3f1a4502 Author: Alan Garny '' Date: Tue Feb 19 18:55:42 2019 +1300 libgit2: binaries for version 0.28.1 '(#1993).' commit e2a4e980f659ecc2e5512f1adad6ded33423ae94 Author: Alan Garny '' Date: Tue Feb 19 18:52:05 2019 +1300 libgit2: make sure that OpenSSL can be found on Linux '(#1993).' commit 64012a1aa336ec8d2d6387c9cf5282a08976e17b Author: Alan Garny '' Date: Tue Feb 19 18:09:55 2019 +1300 Only build libgit2 '(#1993).' commit 8445d4f8f24a7d33dc137f95aba002bc33ebb5a7 Author: Alan Garny '' Date: Tue Feb 19 18:06:58 2019 +1300 libgit2: upgraded to version 0.28.1 '(#1993).' commit bf9e8d40ec224cdee7ed725490b0ea6d47deebe7 Author: Alan Garny '' Date: Tue Feb 19 18:05:55 2019 +1300 Only build libgit2 '(#1993).' commit d1bd9cb5c26499a4e490324a0f9472c2ae14c15f Merge: 8878e9c8b aea623ff1 Author: Alan Garny '' Date: Tue Feb 19 17:43:49 2019 +1300 SUNDIALS: upgraded to version 4.1.0 '(closes' '#1995).' commit aea623ff1dd17fb9757839465cf7b75a20d736e0 Author: Alan Garny '' Date: Tue Feb 19 17:27:20 2019 +1300 Slight update to our downloads page '(#1995).' commit d122b55740013932bb9f5f008afd8e0413507c6d Author: Alan Garny '' Date: Tue Feb 19 17:26:45 2019 +1300 'Don'\''t' only build the SUNDIALS library '(#1995).' commit 15e3176ea7c732ec84649ef6ae71441e450243ea Author: Alan Garny '' Date: Tue Feb 19 17:26:15 2019 +1300 SUNDIALS: binaries for version 4.1.0 '(#1995).' commit 49ec40abc14bf58a2f6c6c61b00ec05ae1caf6ca Merge: 8fb0c2f39 8878e9c8b Author: Alan Garny '' Date: Tue Feb 19 17:18:18 2019 +1300 Merge branch ''\''master'\''' into issue1995. commit 8878e9c8b186c2cbf7be423c021e0dcf7175e23e Merge: 5c26efb22 4e1c25df4 Author: Alan Garny '' Date: Tue Feb 19 17:16:19 2019 +1300 Mesa: upgraded to version 18.3.4 '(closes' '#1994).' commit 8fb0c2f390264f06cf77a9303d5cdbfe3e8cc8d3 Author: Alan Garny '' Date: Tue Feb 19 17:12:50 2019 +1300 SUNDIALS: upgraded to version 4.1.0 '(#1995).' commit d91202f07430b52cc1cdd66ccb9eeac2a78fea80 Author: Alan Garny '' Date: Tue Feb 19 17:10:14 2019 +1300 Only build the SUNDIALS library '(#1995).' commit 972e3caadf8d1e61c63b7c89b61988f1d6cb87a7 Author: Alan Garny '' Date: Tue Feb 19 17:08:57 2019 +1300 Only build the SUNDIALS library '(#1995).' commit 4e1c25df49ad9290f9bdd9ccd8af3497a3e0502f Author: Alan Garny '' Date: Tue Feb 19 17:00:38 2019 +1300 Slight update to our downloads page '(#1994).' commit 29dd19fedf6f8fb47e0336b381a99b5f5bf853ae Author: Alan Garny '' Date: Tue Feb 19 16:58:37 2019 +1300 Revert '"Only' build our Mesa library '(#1994)."' This reverts commit 6050981aed9a35bfbe04767d48ed942b0e833db0. commit 239c47537b6d830937a8cf252dbf1d977ce23b5d Author: Alan Garny '' Date: Tue Feb 19 16:57:46 2019 +1300 Mesa: binary for version 18.3.4 '(#1994).' commit ebc4fa545563862c17b0b5ba18a93fd0bdcf1c31 Author: Alan Garny '' Date: Tue Feb 19 16:52:18 2019 +1300 Mesa: upgraded to version 18.3.4 '(#1994).' commit 6050981aed9a35bfbe04767d48ed942b0e833db0 Author: Alan Garny '' Date: Tue Feb 19 16:51:06 2019 +1300 Only build our Mesa library '(#1994).' commit 5c26efb22c30b45883791aad125e4be8c17ed0fc Merge: 20ef2237b 9a9a614a0 Author: Alan Garny '' Date: Tue Feb 19 16:34:33 2019 +1300 macOS: now enforce the use of Light Mode '(closes' '#1991).' commit 9a9a614a08dc75b9807150ab5fce101150c0b091 Author: Alan Garny '' Date: Tue Feb 19 16:18:09 2019 +1300 macOS: enforce the use of Light Mode '(#1991).' commit 20ef2237b12f5185a25b2124dd64229b9b63474c Merge: 53d046177 997f91360 Author: Alan Garny '' Date: Tue Feb 19 14:28:45 2019 +1300 Some minor cleaning up. commit 997f913603b6a7523714d66061f945200f393f06 Author: Alan Garny '' Date: Tue Feb 19 13:30:55 2019 +1300 Some minor cleaning up. commit 53d0461770632e4cc80f17b9aecd72ed90e7ef70 Merge: 496f7c1c1 1b8abf368 Author: Alan Garny '' Date: Mon Feb 18 11:03:23 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. commit 1b8abf3687036a48e380b63b5801fe5cb7c4633f Author: Alan Garny '' Date: Mon Feb 18 10:46:49 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. Indeed, we are not planning on planning on having Objective-C code in it anymore. commit 496f7c1c1c4fe72eb01aad7d8aea0cb754f494a8 Merge: 267daa4df 9f1bb15ab Author: Alan Garny '' Date: Sun Feb 17 12:03:09 2019 +1300 Some minor cleaning up. commit 9f1bb15abe901983ffb9baf10a967619c008f4c9 Author: Alan Garny '' Date: Sun Feb 17 11:47:35 2019 +1300 Some minor cleaning up. commit 6d6dfccb512025f791f3fcca42d736290d78ca02 Author: Alan Garny '' Date: Sun Feb 17 10:47:20 2019 +1300 Some minor cleaning up. commit 267daa4dfc6c219f9003387786ea7a27a6674a39 Merge: c61754b6f 455df5ff3 Author: Alan Garny '' Date: Sat Feb 16 15:49:54 2019 +1300 Some minor cleaning up. commit 455df5ff367c6ea198d34f87a1aae291bf9f89d5 Author: Alan Garny '' Date: Sat Feb 16 15:23:09 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit 312bb7d48a1b85b0f21ad2c0b16809f93ca5082d Author: Alan Garny '' Date: Sat Feb 16 15:19:02 2019 +1300 Some minor cleaning up. commit 129023ba821d1ba285cb3dce7e22a7c36ce5d793 Author: Alan Garny '' Date: Sat Feb 16 15:15:00 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit c61754b6f31b50bb020c19a22a7870929ea7217c Merge: d59e21f37 1f9a18cdc Author: Alan Garny '' Date: Sat Feb 16 00:58:42 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. commit 1f9a18cdc0f2ddaa6cf7358a6f0b8c91ab3ac878 Author: Alan Garny '' Date: Sat Feb 16 00:41:52 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. Indeed, when calling 'QWidget::setStyle(),' the ownership of the style object is not transferred, so we must therefore delete it ourselves. commit d59e21f37cbfafd52983b8b68d1bb85dfd047140 Merge: aec49f145 65b79663f Author: Alan Garny '' Date: Fri Feb 15 18:24:32 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 65b79663f7613ad5d88c4e62313511d018536ce6 Author: Alan Garny '' Date: Fri Feb 15 16:23:58 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 52773f2db020f89e428234a9e62029edfed72057 Author: Alan Garny '' Date: Fri Feb 15 16:19:29 2019 +1300 Some minor cleaning up. commit aec49f145a381c29ef94c7bf69522254aa1104d4 Merge: 3b876f256 e99fd3c09 Author: Alan Garny '' Date: Fri Feb 15 10:11:46 2019 +1300 QScintilla: upgraded to version 2.11.1 '(closes' '#1983).' commit e99fd3c097f5affddf02072f56054b53617860d4 Author: Alan Garny '' Date: Fri Feb 15 09:56:05 2019 +1300 QScintilla support: get things to build fine on Windows '(#1983).' commit c8f8c5eda8937e301399ca68ee90734598e7405e Author: Alan Garny '' Date: Fri Feb 15 09:33:22 2019 +1300 Revert '"Only' build the QScintilla library '(#1983)."' This reverts commit e9bfa6ef35defdcde88ee2d5898b74580f086058. commit 30a7126da123958c29fd0b92351a2e18db758a0a Author: Alan Garny '' Date: Fri Feb 15 09:32:43 2019 +1300 Slight update to our downloads page '(#1983).' commit 61456121eafdbdbf9b27e7ed99a209cb1fd2b07d Author: Alan Garny '' Date: Fri Feb 15 09:32:15 2019 +1300 QScintilla: binaries for version 2.11.1 '(#1983).' commit d6b5f90fd2761947b6873b9541ff357223b1f0c5 Author: Alan Garny '' Date: Fri Feb 15 09:24:32 2019 +1300 QScintilla: upgraded to version 2.11.1 '(#1983).' commit e9bfa6ef35defdcde88ee2d5898b74580f086058 Author: Alan Garny '' Date: Fri Feb 15 09:18:50 2019 +1300 Only build the QScintilla library '(#1983).' commit 3b876f25601a591535a1ec4d273d5f37aeaa17cb Merge: 4561bd1b1 a9a8b857b Author: Alan Garny '' Date: Thu Feb 14 17:55:31 2019 +1300 Some minor cleaning up. commit a9a8b857b4d24ebcee135e72ff04edf24c4006a5 Author: Alan Garny '' Date: Thu Feb 14 17:06:45 2019 +1300 Some minor cleaning up. commit 4561bd1b13f69ff4c45119049bbabfecafbbd8c3 Merge: a40c096ce 80b1da497 Author: Alan Garny '' Date: Thu Feb 14 17:00:01 2019 +1300 Some minor cleaning up. commit 80b1da497c8b8e585bd17909d24bb7b14efebb1f Author: Alan Garny '' Date: Thu Feb 14 16:20:24 2019 +1300 Some minor cleaning up. commit 9da92ea67baa8a6b13f5cad80ea1a49fa3161495 Author: Alan Garny '' Date: Thu Feb 14 16:14:11 2019 +1300 Some minor cleaning up. commit a40c096ced0d3fdf410f40a0cee5a851ee76ac83 Merge: 533eac372 d42716dac Author: Alan Garny '' Date: Wed Feb 13 12:55:05 2019 +1300 Some minor cleaning up. commit d42716dac9057ef220c5b6e85487347c5b07dba2 Author: Alan Garny '' Date: Wed Feb 13 12:25:39 2019 +1300 Some minor cleaning up. commit 533eac37214095a78b05dd9cf37243f8d9c83193 Merge: b5bcb8633 7d60973ab Author: Alan Garny '' Date: Wed Feb 13 12:10:44 2019 +1300 Made our '`tintedIcon()`' method more generic. commit 7d60973ab97dea3c01f341aab4d1f7f70efee194 Author: Alan Garny '' Date: Wed Feb 13 11:50:10 2019 +1300 Made our '`tintedIcon()`' method more generic. commit a781288616eac8a25df190b70c96582aa07dd573 Author: Alan Garny '' Date: Wed Feb 13 11:40:47 2019 +1300 Some minor cleaning up. commit b5bcb86331ac2177306db77d9cba15a5d5bf7603 Merge: 820e8d647 273d4dffa Author: Alan Garny '' Date: Wed Feb 13 09:10:30 2019 +1300 Some minor cleaning up. commit 273d4dffa1f2ac8bad04772a18eddbbb435a5c5c Author: Alan Garny '' Date: Wed Feb 13 08:44:48 2019 +1300 Removed unnecessary '`newLineWidget()`' methods. commit ff28fd5ee6f4225c299d7f87211a7453bac10ffb Author: Alan Garny '' Date: Wed Feb 13 08:44:12 2019 +1300 Some minor cleaning up. commit 2b408d50e034715235453dc547cc666a92af2da3 Author: Alan Garny '' Date: Wed Feb 13 08:43:35 2019 +1300 Some minor cleaning up. commit 666a725639597071d827effbfa52529f0d3e04ca Author: Alan Garny '' Date: Wed Feb 13 08:43:10 2019 +1300 Some minor cleaning up. commit fcd4c46fba81ad83c10b26d2c2146a3ef2678186 Author: Alan Garny '' Date: Wed Feb 13 08:42:52 2019 +1300 Some minor cleaning up. commit 8a73a05cff2522602ac55cbc3cad633af73f4eb5 Author: Alan Garny '' Date: Wed Feb 13 08:42:27 2019 +1300 Some minor cleaning up. commit 27712648195e2d6407be93badbe0b5e58f3bc614 Author: Alan Garny '' Date: Wed Feb 13 08:40:37 2019 +1300 Programmatically prevent drag '&' drop on 'a(n' 'OpenCOR-based)' Web page. commit 3b52c682558aa3e0a1bc4f6ebf67d96494c5e999 Author: Alan Garny '' Date: Wed Feb 13 08:14:51 2019 +1300 Programmatically prevent drag '&' drop on 'a(n' 'OpenCOR-based)' Web page. commit df4518af1330f4f897d1fbd669b2646c4acdf5a8 Author: Alan Garny '' Date: Wed Feb 13 08:12:45 2019 +1300 CSS: replaced '`background`' with '`background-color`' wherever possible. commit 820e8d6471ace8ca8b1650ac017b428b22a5d759 Merge: b5d5fb40e 237d1a52a Author: Alan Garny '' Date: Mon Feb 11 10:28:11 2019 +1300 QScintilla: upgraded to version 2.11 '(closes' '#1976).' commit 237d1a52a98fbc1b337669cba1128eba6130edb5 Author: Alan Garny '' Date: Mon Feb 11 09:45:25 2019 +1300 Slight updates to our downloads pages '(#1976).' commit 3b9440063db89d12d48ac534bd97a9a057a4e3c5 Author: Alan Garny '' Date: Mon Feb 11 09:42:30 2019 +1300 Revert '"Only' build the QScintilla library '(#1976)."' This reverts commit e1ff67ab3e80153f85dee961b5061c2be613ddde. commit be9d40a3613e8f21a049235ba0d36a6bdf6c869c Author: Alan Garny '' Date: Mon Feb 11 09:42:14 2019 +1300 QScintilla: binaries for version 2.11 '(#1976).' commit 7bfb5480086c3065bb608606893190d75c9280bb Author: Alan Garny '' Date: Mon Feb 11 09:34:51 2019 +1300 QScintilla: upgraded to version 2.11 '(#1976).' commit e1ff67ab3e80153f85dee961b5061c2be613ddde Author: Alan Garny '' Date: Mon Feb 11 09:30:28 2019 +1300 Only build the QScintilla library '(#1976).' commit b5d5fb40e70ceb0bb5760766b6373390ffe8116d Merge: 8cbb052b8 7c8b3da03 Author: Alan Garny '' Date: Thu Feb 7 11:26:10 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 7c8b3da03365c68f9af4dac7d86e15b614a034fa Author: Alan Garny '' Date: Thu Feb 7 11:06:19 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 8cbb052b8c76dfa501bdc944ef73a28ed38b05ef Merge: f0e710eec 4096c9bce Author: Alan Garny '' Date: Fri Feb 1 15:05:32 2019 +1300 New snapshot. commit 4096c9bcebef54c99ecb83badf336f9e28888ad8 Author: Alan Garny '' Date: Fri Feb 1 14:49:45 2019 +1300 New snapshot. commit f0e710eecbc89f32b9efb1b9ce9dc3eea94da222 Merge: 0354d7563 4af091906 Author: Alan Garny '' Date: Fri Feb 1 14:44:40 2019 +1300 Simulation Experiment view: added basic support for the import of external data '(closes' '#1845).' commit 4af0919067ab24dd858c082a98b5d5c1fa905d8c Author: Alan Garny '' Date: Fri Feb 1 14:19:35 2019 +1300 Slight update to our downloads and what is new pages '(#1845).' commit 90aa3ee1f2b557ce451f710b240e44c08e9be42e Author: Alan Garny '' Date: Fri Feb 1 14:15:19 2019 +1300 Simulation support: show import values for the current '(i.e.' 'starting)' point when resetting all our resets '(#1845).' commit 7c8342c541a63c504090f492b7b3cb42d6c054b5 Author: Alan Garny '' Date: Fri Feb 1 13:57:33 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs '(#1845).' commit e0bce81fb02d5c22e6e0c0198a76da632489384e Author: Alan Garny '' Date: Fri Feb 1 11:59:11 2019 +1300 Some minor cleaning up. commit dfd914bc008e4d43edd31ee664bd16d31a4c628f Author: Alan Garny '' Date: Fri Feb 1 10:54:33 2019 +1300 Some minor cleaning up. commit c5b41826c57235e8f80e9728006547de81d6a526 Author: Alan Garny '' Date: Fri Feb 1 09:36:22 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs '(#1845).' commit a080615eae0cbcca08207bb6d61becf8e43b9c35 Merge: f469f7382 0354d7563 Author: Alan Garny '' Date: Thu Jan 31 17:54:33 2019 +1300 Merge branch ''\''master'\''' into issue1845 commit 0354d7563ff4d6923b83f31093664adc8f0c6f86 Merge: 2bf9694d7 d60c9416b Author: Alan Garny '' Date: Thu Jan 31 17:52:51 2019 +1300 Simulation Experiment view: fixed various issues with saving a file under a new name '(closes' '#1967).' commit d60c9416b40fe3bfa6e9040482055e7c59a5982e Author: Alan Garny '' Date: Thu Jan 31 14:59:27 2019 +1300 Slight updates to our downloads and what is new pages '(#1967).' commit 5f1d8ba8ba0eb98c62fa16f7196a0a31ab641520 Author: Alan Garny '' Date: Thu Jan 31 14:52:56 2019 +1300 Simulation support: properly handle the case where we save a file under a new name '(#1967).' commit e002df01b42e10dcec394eedb904049a73fb3b6e Author: Alan Garny '' Date: Thu Jan 31 14:33:07 2019 +1300 Simulation Experiment view: always update the reset state/all model parameters actions. Until now, we were only updating them if we were not in development, which is clearly not what we want. commit d9e5f84d1f06f630a7d16120d147b42fd87f9c39 Author: Alan Garny '' Date: Thu Jan 31 14:31:19 2019 +1300 Some minor cleaning up. commit 1a54bc21e320644fe894aebcc7b778b3ec1c20cf Author: Alan Garny '' Date: Thu Jan 31 14:14:38 2019 +1300 Some minor cleaning up. commit f43aba8fe2d2737e53318ab9cf9d87628dd5b7d9 Author: Alan Garny '' Date: Thu Jan 31 14:14:09 2019 +1300 Some minor cleaning up. commit 6efdcb7a02e11f20fdbe699a8d755237a6306a46 Author: Alan Garny '' Date: Thu Jan 31 09:53:07 2019 +1300 CellML support: 'don'\''t' have a runtime track its CellML file '(#1967).' Indeed, the tracked CellML file may become obsolete if it gets saved under a new name. commit 0853d87624cd25a5f622fda8eb79c0b66cea09eb Author: Alan Garny '' Date: Thu Jan 31 09:42:04 2019 +1300 Simulation: update our internals if our file is being remanaged '(#1967).' commit f469f7382da186ef7581278c9bff7a44bc9e5035 Author: Alan Garny '' Date: Wed Jan 30 15:44:20 2019 +1300 Data store interface: we 'don'\''t' want to rethrow but simply throw an exception '(#1845).' commit ca3cf15de1359c93ea48d94b8fa3b602eea87ed4 Author: Alan Garny '' Date: Wed Jan 30 15:43:51 2019 +1300 Revert '"Data' store interface: we 'don'\''t' want to rethrow but simply throw an exception '(#1845)."' This reverts commit 558c4c658f2970c68392dbf287da8c94fd588c0d. commit 558c4c658f2970c68392dbf287da8c94fd588c0d Author: Alan Garny '' Date: Wed Jan 30 15:42:39 2019 +1300 Data store interface: we 'don'\''t' want to rethrow but simply throw an exception '(#1845).' commit dbd13980297526c0e5e63b9efdcfc00adfa66026 Author: Alan Garny '' Date: Wed Jan 30 15:39:42 2019 +1300 Data store import data: results values are never to be freed since they are managed by whoever used the import data '(#1845).' I should read my own 'comments!' commit 314eea8fcf3284f597cc364f2420486696053f8f Author: Alan Garny '' Date: Wed Jan 30 15:09:01 2019 +1300 Some minor cleaning up. commit c0586b6c21c991ebd2281c57207772917cd1c3e9 Author: Alan Garny '' Date: Wed Jan 30 15:00:18 2019 +1300 Data store interface: properly handle the case where a run cannot be added to a variable '(#1845).' This also comes handy for our import of external data in case there are already some runs, meaning that we would need to add runs for our computed imported results. commit 48e68b72e47332e071f589add02657db3ad47a7b Author: Alan Garny '' Date: Wed Jan 30 14:48:53 2019 +1300 Some minor cleaning up. commit 9c2d2072fb3a694672db179bc4e2a0a11e10fead Author: Alan Garny '' Date: Wed Jan 30 14:44:30 2019 +1300 Data store interface: prevent double deleting '(and' therefore 'crash)' in DataStoreImportData '(#1845).' commit 5476e92fdd8d0e3ab985183e008bcb43c477a3b9 Author: Alan Garny '' Date: Wed Jan 30 14:40:59 2019 +1300 Data store interface: our extra runs actually get removed when removing our import and results variables '(#1845).' commit d22586c3a384e8b1b369ca6e8bd9965edb67f1fa Author: Alan Garny '' Date: Wed Jan 30 13:28:41 2019 +1300 Some minor cleaning up. commit 1aca9324d332a3fdb3dbf0e1d6022ea9c11bbcc7 Merge: f00466846 2bf9694d7 Author: Alan Garny '' Date: Wed Jan 30 11:24:17 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 2bf9694d7cc2cccc8c02d81b2c9b74524178e3e4 Merge: 5a37c2d73 4677052a9 Author: Alan Garny '' Date: Wed Jan 30 11:10:20 2019 +1300 Cleaning up. commit 4677052a97d261b7856ab6a7fbc6236b85e3d883 Author: Alan Garny '' Date: Wed Jan 30 10:35:33 2019 +1300 Some minor cleaning up. commit 86af61300d6fb2f7703025ae0fcc359c732de78d Author: Alan Garny '' Date: Wed Jan 30 10:30:03 2019 +1300 Some minor cleaning up. commit b7c0c2dcc56d80a16d72ca8436b98524aaf28df4 Author: Alan Garny '' Date: Wed Jan 30 10:24:25 2019 +1300 'CliApplication::command():' have the command passed to it separately rather than as part of our arguments. commit 51a200489e400220feaf8be0b1adb24309f0d565 Author: Alan Garny '' Date: Wed Jan 30 10:04:07 2019 +1300 CLI version: options are well... options for a command. commit 5a37c2d73d90e8da5f92c4440fd9adaa86135d1a Merge: 72cd468d1 9181d236f Author: Alan Garny '' Date: Tue Jan 29 19:02:35 2019 +1300 CellML tools: can now validate a file from the command line '(closes' '#1964).' commit 9181d236f451540e45bf68433ed4b0b2294351d1 Author: Alan Garny '' Date: Tue Jan 29 18:34:15 2019 +1300 CellML tools: remove HTML tags from our validation output '(#1964).' commit c237d002ca0437dba4f02ae31c03cbcd87c181b8 Author: Alan Garny '' Date: Tue Jan 29 18:33:15 2019 +1300 CellML support: slight improvement to our validation. Indeed, OpenCOR would crash if an imported CellML file was XML-malformed. commit 254038571838a5cb046b193a8b40155c373d971e Author: Alan Garny '' Date: Tue Jan 29 17:45:12 2019 +1300 Slight update to our downloads and what is new pages '(#1964).' commit e9991e28b101a0ce4508793c86b993cf028f26a2 Author: Alan Garny '' Date: Tue Jan 29 17:36:33 2019 +1300 Tests: have our 'runCli()' method runt an integer and its output as a parameter passed by reference. This is useful for our work on issue '#1964' since it allow us to test the exit code of the CLI version of OpenCOR while still being able to access its output. commit 73b4061da7df7ab1b3f1248f663835ec6ae4b743 Author: Alan Garny '' Date: Tue Jan 29 17:33:40 2019 +1300 CellML tools: 'don'\''t' consider a file valid before actually trying to validate it '(#1964).' commit 1ead9aa641bef781be944805dc7b63b3a77eceee Author: Alan Garny '' Date: Tue Jan 29 17:32:43 2019 +1300 CLI version: return -1 if the command option failed for some reason or another. commit 8957e83be27b2c589f7a4dd3f29b5a2b64186a20 Author: Alan Garny '' Date: Tue Jan 29 17:32:04 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit ec5c674287543684609234140543510340e0be2c Author: Alan Garny '' Date: Tue Jan 29 16:34:18 2019 +1300 CLI tests: check that some options/command have the right number of arguments. commit ac0551546fc0eb5242b51b0a71f353b0dfc26740 Author: Alan Garny '' Date: Tue Jan 29 16:33:47 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit 219af848e2e9abe4aacc43e44b7545e87166672f Author: Alan Garny '' Date: Tue Jan 29 16:29:02 2019 +1300 CellML tools: can now validate a file from the command line '(#1964).' commit a501ec014f908ee96f5e01d32012c966ae3727a8 Author: Alan Garny '' Date: Tue Jan 29 16:25:13 2019 +1300 Some minor cleaning up. commit 40779b9d6582ef80568eb925092cbb0140e931fe Author: Alan Garny '' Date: Tue Jan 29 16:23:22 2019 +1300 Some minor cleaning up. commit b99a1b04006349f42eba8675f407f1e2b714e929 Author: Alan Garny '' Date: Tue Jan 29 15:52:54 2019 +1300 CellML tools: can now validate a file from the command line '(#1964).' commit 9b53a7acc533995f78423c9edb3be57ee559bdbe Author: Alan Garny '' Date: Tue Jan 29 15:20:13 2019 +1300 Some minor cleaning up. commit a7a4da9104d818fb5ee5a2b748be835d6166f63b Merge: 03c0ce549 72cd468d1 Author: Alan Garny '' Date: Fri Jan 25 18:41:14 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit f004668464a3e2baec4d0d9c79d249a0697bafc2 Merge: 234e6bc74 72cd468d1 Author: Alan Garny '' Date: Fri Jan 25 18:40:16 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 72cd468d15583079b83c91d46954d27366460822 Merge: 59583badd 939e96eb3 Author: Alan Garny '' Date: Fri Jan 25 18:39:15 2019 +1300 CellML Annotation view: prevent OpenCOR from crashing after a CellML file has been rendered invalid '(closes' '#1958).' commit 939e96eb3564a1e15ddbdfc1a53ee23d190941e4 Author: Alan Garny '' Date: Fri Jan 25 18:14:49 2019 +1300 Slight updates to our downloads and what is new pages '(#1958).' commit 4196607441a1c628a51f468be46da55a4f762d61 Author: Alan Garny '' Date: Fri Jan 25 18:14:22 2019 +1300 CellML Annotation view: make sure that we have a model before actually populating ourselves '(#1958).' commit a48d27d785a42cdeea90e6a12b20ab4e5c7855ba Author: Alan Garny '' Date: Fri Jan 25 18:13:55 2019 +1300 Some minor cleaning up. commit e1714d2ef964128e52b62dc175c1d6f6941ba9df Author: Alan Garny '' Date: Fri Jan 25 18:13:18 2019 +1300 Some minor cleaning up. commit 395022c665cafe32b248040d2f8f649b389a4d1c Author: Alan Garny '' Date: Fri Jan 25 18:13:04 2019 +1300 Some minor cleaning up. commit 59583baddf356f73808a094ea95af48100da43aa Merge: 0b6218594 09f78c236 Author: Alan Garny '' Date: Fri Jan 25 12:27:12 2019 +1300 SUNDIALS: upgraded to version 4.0.2 '(closes' '#1960).' commit 09f78c2362b6553513348603dd766d092abc9a65 Author: Alan Garny '' Date: Fri Jan 25 11:56:13 2019 +1300 Some minor cleaning up. commit 110f6b54a7f723781105efab9f87c686251f7b34 Author: Alan Garny '' Date: Fri Jan 25 11:54:23 2019 +1300 KINSOL solver: use the new recommended methods '(#1960).' commit 7bc23938fdb1758c541759b9a6e424e0c3c027a8 Author: Alan Garny '' Date: Fri Jan 25 11:54:08 2019 +1300 Some minor cleaning up. commit 66156abf7c0c2950432fffbe962affa7051e5c87 Author: Alan Garny '' Date: Fri Jan 25 10:22:15 2019 +1300 SUNDIALS: binaries for version 4.0.2 '(#1960).' commit e0dff5ca5b641a1548e41ae46a14f2b06d5d3daf Author: Alan Garny '' Date: Fri Jan 25 10:17:02 2019 +1300 Slight update to our downloads page '(#1960).' commit 5e9e07653b3d50cde573162c1d7ff9762bc0a9aa Author: Alan Garny '' Date: Fri Jan 25 10:15:44 2019 +1300 Revert '"Only' build our SUNDIALS package '(#1960)."' This reverts commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f. commit f49a172265922a73663e23c162ac5a4ae2e5d9bb Author: Alan Garny '' Date: Fri Jan 25 09:56:13 2019 +1300 SUNDIALS: upgraded to version 4.0.2 '(#1960).' commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f Author: Alan Garny '' Date: Fri Jan 25 09:34:13 2019 +1300 Only build our SUNDIALS package '(#1960).' commit 6fed7ae12b3c98e6a588ecd196dcf1b09f5c970f Author: Alan Garny '' Date: Fri Jan 25 09:33:56 2019 +1300 Revert '"Only' build our SUNDIALS package '(#1960)."' This reverts commit 4a362f10a46502c30307c465fd591b1526b12f16. commit f6ad71083735c446a644599d829cd418af4ac8b7 Author: Alan Garny '' Date: Fri Jan 25 09:27:40 2019 +1300 SUNDIALS: upgraded to version 4.0.2 '(#1960).' commit 4a362f10a46502c30307c465fd591b1526b12f16 Author: Alan Garny '' Date: Fri Jan 25 09:27:23 2019 +1300 Only build our SUNDIALS package '(#1960).' commit 234e6bc74b83139082835b5a44c37d2b67ff9612 Author: Alan Garny '' Date: Thu Jan 24 17:08:41 2019 +1300 Import of data in a simulation: add the results runs in DataStoreImportData '(#1845).' So that we can '(next)' handle the case where not all the memory could be handled. commit 0a0e0218655e251d4b31e0bd3893084a8b117b53 Author: Alan Garny '' Date: Thu Jan 24 16:29:38 2019 +1300 Some minor cleaning up. commit 4e2f2db70a705496dc9ef0283e6a822915983747 Author: Alan Garny '' Date: Thu Jan 24 15:39:45 2019 +1300 Import of data in a simulation: use the results variables created by DataStoreImportData '(#1845).' commit 49a48fc2396958eb39880a3eae2e9fb948956309 Author: Alan Garny '' Date: Thu Jan 24 15:32:18 2019 +1300 DataStoreImportData: give access to our import/results variables '(#1845).' commit d132080f2a886db231a0769d8c1735248b33dfc3 Author: Alan Garny '' Date: Thu Jan 24 14:39:13 2019 +1300 Some minor cleaning up. commit e5a71209aee5b6ead45ddd94515c0ddd28ea3c71 Author: Alan Garny '' Date: Thu Jan 24 14:33:04 2019 +1300 Have DataStoreImportData tell whether it is valid '(#1845).' Better than checking for imported values '(for' 'example).' commit 5a61dc2324130f99e9537c25dc23c12b481171ce Author: Alan Garny '' Date: Thu Jan 24 14:32:16 2019 +1300 Some minor cleaning up. commit 12cf9ee59ecd91d7d4f4a4eb3438d003a21c1781 Author: Alan Garny '' Date: Thu Jan 24 14:13:13 2019 +1300 Have DataStoreImportData try to create our results values '(#1845).' commit 2c8825082dd3001bcff1b6b8287506d0ec699e1f Author: Alan Garny '' Date: Thu Jan 24 14:11:22 2019 +1300 Some minor cleaning up. commit 3f24526f9ccd9a7dc4c15e3b5094419699e4d64b Author: Alan Garny '' Date: Thu Jan 24 13:50:33 2019 +1300 Some minor refactoring of DataStoreImportData '(#1845).' Since we are going to add some results values. commit cd31e0fe9b002d6dca8cc1979c6a73a678353fc4 Author: Alan Garny '' Date: Thu Jan 24 13:20:24 2019 +1300 Some minor cleaning up. commit 733ef655f4bd2cc21a4128a6f9897c3a628d13ee Author: Alan Garny '' Date: Thu Jan 24 13:18:07 2019 +1300 Data store interface: pass a results data store to our 'getImportData()' '(#1845).' commit 4eddaa1b0458295a62602a23fd2e31246618a0a0 Author: Alan Garny '' Date: Thu Jan 24 13:14:44 2019 +1300 Have DataStoreImportData know about our results data store too '(#1845).' commit 8a557e13d410feb12a0a82acd9a8a417d97285e9 Author: Alan Garny '' Date: Thu Jan 24 11:35:26 2019 +1300 Some minor cleaning up. commit 5b016db1b7f42339c680eccff7e899f8a5770b19 Author: Alan Garny '' Date: Thu Jan 24 11:32:39 2019 +1300 Some minor cleaning up. commit 2b30213bbf5bd2507599cfd754c2906ae3e026ec Author: Alan Garny '' Date: Thu Jan 24 11:28:39 2019 +1300 Data store: improved our DataStoreImportData constructor '(#1845).' Indeed, if adding variables was to fail, we were not able to remove them since the call to 'DataStore::addVariables()' $'didn\342\200\231t' return properly. So, now, we add one variable at a time and keep track of the ones that we were able to add, in case we would need to remove them. commit 8cd333dd69771522c53802794a75b6ecd866ea32 Author: Alan Garny '' Date: Wed Jan 23 17:33:48 2019 +1300 Have DataStoreImportData to handle the progress of a data import '(#1845).' commit bdd18ba77767a58c9eb70537e3d21dd41bca39b1 Author: Alan Garny '' Date: Wed Jan 23 17:10:37 2019 +1300 Some minor cleaning up. commit 713b118ab95f73fdbd6f051eb26322f5121863ac Author: Alan Garny '' Date: Wed Jan 23 17:08:06 2019 +1300 Simulation Experiment view: account for the fact that we might have problems getting our import data '(#1845).' I.e. we can either not access the data file '(anymore)' or we cannot allocate all the memory we need to store the data. commit 96174e5090f4483beabdfaed64f091c9be2f4c1f Author: Alan Garny '' Date: Wed Jan 23 16:23:14 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things '(#1845).' commit 7552f31686be8a0352e93ae4f4302fdbf070b807 Author: Alan Garny '' Date: Wed Jan 23 16:21:49 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things '(#1845).' commit e2f9b707422150d219b17aea2dec3d4dda0707e2 Author: Alan Garny '' Date: Wed Jan 23 16:02:08 2019 +1300 Data store import: have our DataStoreImportData constructor to add a run to our data store '(#1845).' commit 4346f85c5b18dac84243d30503919581ec88be1c Author: Alan Garny '' Date: Wed Jan 23 15:54:03 2019 +1300 Data store import: have our DataStoreImportData constructor to add the required number of variables to our data store '(#1845).' commit be1798b15637edb99b9a377d80e6cedc1cf2efa3 Author: Alan Garny '' Date: Wed Jan 23 15:48:02 2019 +1300 Data store import: have our DataStoreImportData constructor to allocate the values array that will be used to import data '(#1845).' commit 4b34077e2a4468ae3ff2bf84bee8d81c25b71b3e Author: Alan Garny '' Date: Wed Jan 23 15:13:37 2019 +1300 Simulation Experiment view: fixed and improved our import progress '(#1845).' For one, we were doing a min using '`pProgress`' rather than '`progress`.' Then, there is something maybe faster, but certainly shorter/cleaner, which consists of using 'std::min_element().' commit ac76c3127194671d073954deb4acc813c810cb9d Author: Alan Garny '' Date: Wed Jan 23 14:28:33 2019 +1300 Simulation Experiment view: optimised the dragging and dropping of data files '(#1845).' We keep track of valid files when dragging them over the view, so we $'don\342\200\231t' have to test them again before actually importing them. commit b51a719d77eb141b4b73b590d95d16b267a5bdcb Author: Alan Garny '' Date: Wed Jan 23 14:08:40 2019 +1300 Some minor cleaning up. commit 3b2acc9c5ad74d16f82b3ee11ef9d5c5bb422fa4 Author: Alan Garny '' Date: Wed Jan 23 13:37:14 2019 +1300 CSV data store: use CRLF to separate lines in our export. This is what https://csvlint.io/ told us to do after we validated a CSV file '(generated' by 'OpenCOR)' that uses LF. commit 78f6d1f90b553be40e3e2f197de9618ccc71a345 Author: Alan Garny '' Date: Wed Jan 23 13:03:43 2019 +1300 Some minor cleaning up. commit a398ae2af984a39aa04ef250108a0aaa4c52bdb2 Author: Alan Garny '' Date: Wed Jan 23 13:03:11 2019 +1300 Simulation Experiment view: retrieve the number of data points to import before doing the import itself '(#1845).' This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit bf52910de705329797907bc8c0294788e301f87d Author: Alan Garny '' Date: Wed Jan 23 10:40:20 2019 +1300 Some minor cleaning up. commit 0e292a91f7478fa21bf8e5643c3e9fcb1a6011d6 Author: Alan Garny '' Date: Wed Jan 23 10:38:55 2019 +1300 Simulation Experiment view: retrieve the number of variables to import before doing the import itself '(#1845).' This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit 3a6adbf842c3aae9f2700b39d0c67bb7a1a6273a Merge: aa188d482 0b6218594 Author: Alan Garny '' Date: Mon Jan 21 11:36:09 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 0b6218594a89bcc2d2d02fb6390105275e316a3f Merge: 19c712b55 fab2b64e3 Author: Alan Garny '' Date: Mon Jan 21 11:34:12 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned '(closes' '#1956).' commit fab2b64e344fab69af2b2a8236b963e9b457aa3e Author: Alan Garny '' Date: Mon Jan 21 11:17:03 2019 +1300 Slight updates to our downloads and what is new pages '(#1956).' commit 5af6640270725218ebf42c304769db05d1088467 Author: Alan Garny '' Date: Mon Jan 21 11:13:56 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned '(#1956).' commit 19c712b558e3a8d8af42dce415e5357d055dedbc Merge: 23177ccd5 386049740 Author: Alan Garny '' Date: Mon Jan 21 10:58:22 2019 +1300 Some minor cleaning up. commit 3860497408f6db0c7986bdc2fb1464f6c916e9ca Author: Alan Garny '' Date: Mon Jan 21 10:24:46 2019 +1300 Some minor cleaning up. commit bde274690fcebd50e18f47eac9e11d4d0bdd0f73 Author: Alan Garny '' Date: Mon Jan 21 10:08:45 2019 +1300 Some minor cleaning up. commit aa188d482c432724c958fa146e01b579c8118081 Author: Alan Garny '' Date: Fri Jan 18 15:53:23 2019 +1300 Simulation: compute the values of imported data when we already have some simulation results '(#1845).' commit 4a42e503652e0d6cf48e3a340d8a4f0bf86e2bf2 Author: Alan Garny '' Date: Fri Jan 18 15:34:59 2019 +1300 Data store: 'don'\''t' prevent the addition of variables when there are already some runs '(#1845).' Indeed, $'it\342\200\231s' up to the caller to be careful and do whatever needs doing if adding variables to a data store that already has some runs '(i.e.' what we now do in 'SimulationResults::importData()).' commit 985d7c5f7bccd21abac76712bc3238cd4a8e050f Author: Alan Garny '' Date: Fri Jan 18 15:32:59 2019 +1300 Some minor cleaning up. commit a341231dbdd503182d766b9e0dc5e01b12851209 Author: Alan Garny '' Date: Fri Jan 18 15:03:42 2019 +1300 Added 'SimulationResults::realValue()' to make things easier to compute the value of imported data that have just been imported when there are already some simulation results '(#1845).' commit 571ba1976dde914e70d1d84adb131fb8ab3fc7de Author: Alan Garny '' Date: Fri Jan 18 12:50:52 2019 +1300 Added 'SimulationResults::realPoint()' to make things easier to compute imported data that have just been imported when there are already some simulation results '(#1845).' commit 4274e888e8e58ae76fe03048b92ec8848a93184f Author: Alan Garny '' Date: Fri Jan 18 11:58:25 2019 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit 6863e83c5ff23ad61e884115623929a33610d539. commit 6863e83c5ff23ad61e884115623929a33610d539 Author: Alan Garny '' Date: Fri Jan 18 11:48:22 2019 +1300 Some minor cleaning up. commit 03c0ce5497c1adaef530a078191a18b3120e9b8a Merge: 8bb270dfe 23177ccd5 Author: Alan Garny '' Date: Thu Jan 17 16:45:42 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 8fe9038d0ee4839a76749139b74ddc94e6f6e470 Merge: 27405dfe9 23177ccd5 Author: Alan Garny '' Date: Thu Jan 17 16:44:14 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 23177ccd50316f9b8627a5e46b244b6ab316214a Merge: 51f0fc972 125d5d798 Author: Alan Garny '' Date: Thu Jan 17 16:43:23 2019 +1300 Some minor cleaning up. commit 27405dfe971cc645970a233c7424285fa63ce54e Author: Alan Garny '' Date: Thu Jan 17 16:32:17 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file '(#1845).' commit a4dbbd8fd86bcbfe991b6bd4c96d9b66ae1b7c58 Author: Alan Garny '' Date: Thu Jan 17 16:28:10 2019 +1300 Some minor cleaning up. commit 125d5d798308c8f23fb0ba9b90e49c410d413680 Merge: 880634b43 51f0fc972 Author: Alan Garny '' Date: Thu Jan 17 16:14:09 2019 +1300 Merge remote-tracking branch ''\''opencor/master'\''' commit 880634b4370e85919750f3a905cba4b7ec4309d2 Author: Alan Garny '' Date: Thu Jan 17 16:13:40 2019 +1300 Some minor cleaning up. commit 5d51f79a7e613735b5f89201bb38eab35c01c5fe Author: Alan Garny '' Date: Thu Jan 17 16:12:33 2019 +1300 Some minor cleaning up. commit d0abac84098595f8941ef569dc398db1c3d5a09f Author: Alan Garny '' Date: Thu Jan 17 15:32:32 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file '(#1845).' commit f594cdf69c2d9fa89848900bc2f50717659bb88b Author: Alan Garny '' Date: Thu Jan 17 15:24:49 2019 +1300 Some minor cleaning up. commit a585e6b248b8ff3b0b816a7cbf76cc9721f0986f Merge: b393f7fc0 51f0fc972 Author: David Brooks '' Date: Thu Jan 17 15:20:05 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit e06de3c00931bfae8c7652dcfeef2de0caf17f48 Author: Alan Garny '' Date: Thu Jan 17 14:55:45 2019 +1300 Some minor cleaning up. commit 93c9ef842391e48c9024394976a11ab4de516358 Author: Alan Garny '' Date: Thu Jan 17 14:43:07 2019 +1300 Some minor cleaning up. commit 51f0fc972ca9535fb9239abf3120d5fec61b5695 Merge: 7b046e30b 7930f525d Author: Alan Garny '' Date: Thu Jan 17 13:51:53 2019 +1300 CMake: show URL when we have download errors. commit 7930f525db316a796e0cdb795cfb2085f4361ddc Author: David Brooks '' Date: Thu Jan 17 13:09:03 2019 +1300 CMake: show URL with all download errors. commit 4122fce7a6c667faaa532272bdbb3141a5c82e83 Author: David Brooks '' Date: Thu Jan 17 12:06:04 2019 +1300 CMake: tweak messages when download errors. commit f6cb6d2dc4c973dd8078a02e32cbd2a74f95be76 Author: Alan Garny '' Date: Thu Jan 17 11:49:52 2019 +1300 Some minor cleaning up. commit bf05cc8d4692821be6e99a2965a4871098d098a8 Author: Alan Garny '' Date: Thu Jan 17 11:37:06 2019 +1300 Some minor cleaning up. commit abfbf8382dd6703fc7f50c43616085dc4224f229 Author: Alan Garny '' Date: Thu Jan 17 11:28:00 2019 +1300 Some minor cleaning up. commit b393f7fc0ddbf3e6fdf60bb7ce0b8184fd2f064f Merge: da1b9154d 7b046e30b Author: David Brooks '' Date: Thu Jan 17 10:56:37 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit 12c9fd5358d92f297f8ea5dfbe57e8dcca9e1c48 Author: David Brooks '' Date: Thu Jan 17 10:44:15 2019 +1300 CMake: show URL when we have download errors. commit 037f362113648edcc14f0edfed537f2dc68ca025 Merge: 5bb8ae1c8 7b046e30b Author: Alan Garny '' Date: Thu Jan 17 10:23:05 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 8bb270dfe4835141c2edd8a9110b89340cfc53a6 Merge: 2d31bb435 7b046e30b Author: Alan Garny '' Date: Thu Jan 17 10:22:33 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 7b046e30b2c0aa041e3e167ef933a4ffa880cabf Merge: 2f327d9c1 65352df34 Author: Alan Garny '' Date: Thu Jan 17 10:20:57 2019 +1300 Revert '"File' Organiser window: slightly reworked the loading/saving of 'settings."' commit 65352df343a9829f12f04cd2bcad9e26c5bf39be Author: Alan Garny '' Date: Thu Jan 17 09:58:07 2019 +1300 Revert '"File' Organiser window: slightly reworked the loading/saving of 'settings."' This reverts commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f. Indeed, that commit broke backward compatibility. To use '`master`' OpenCOR was fine, but then if we were to use OpenCOR 0.6 '(or' an earlier version of 'OpenCOR),' OpenCOR would crash straightaway. So, although we 'don'\''t' need 'itemInfo[1]' anymore, we still keep it to ensure backward compatibility. commit 5bb8ae1c8a56c9596751648dbd51423dd30e1000 Author: Alan Garny '' Date: Wed Jan 16 18:08:16 2019 +1300 BioSignalML data store: can now recognise a BioSignalML file '(#1845).' commit 8a6ee87b57e904b571f8aadab53b58283809dbfc Author: Alan Garny '' Date: Wed Jan 16 18:04:35 2019 +1300 Some minor cleaning up. commit 3ac13aecd40fd5adc1a3b424809bbca62af4b9e0 Author: Alan Garny '' Date: Wed Jan 16 17:37:57 2019 +1300 Some minor cleaning up. commit d1a127381310f28824938f77d9a2e996c37067dc Merge: 4a4ff2335 2f327d9c1 Author: Alan Garny '' Date: Wed Jan 16 17:16:50 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 2d31bb435a137a036161056787596d9ca0d7cc3f Merge: 8784de414 2f327d9c1 Author: Alan Garny '' Date: Wed Jan 16 17:16:21 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 2f327d9c19721248dc59ba3b41ee2ae072d2fe09 Merge: b8164238c 8bca58aeb Author: Alan Garny '' Date: Wed Jan 16 17:15:17 2019 +1300 CMake: better error reporting when we 'can'\''t' retrieve a prebuilt package. commit 8bca58aeb79061c7173bb8b160e43df3842a4f2b Author: Alan Garny '' Date: Wed Jan 16 16:58:52 2019 +1300 CMake: better error reporting when we 'can'\''t' retrieve a prebuilt package. commit 4a4ff23359de49f38213688d3681c81125c37764 Merge: 81c0c8614 b8164238c Author: Alan Garny '' Date: Tue Jan 15 17:40:55 2019 +1300 Merge branch ''\''master'\''' into issue1845. commit 8784de4145186f0bf9c674eb103b7802fb4ae8c6 Merge: 36227b15b b8164238c Author: Alan Garny '' Date: Tue Jan 15 17:20:06 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit b8164238c35f42ee5f79f79d5da4195aeb8034b5 Merge: 26f4a461b 74863874b Author: Alan Garny '' Date: Tue Jan 15 17:18:06 2019 +1300 Some minor cleaning up. commit 36227b15bfdd01e33344ee1a47c1df0b4edf5808 Author: Alan Garny '' Date: Tue Jan 15 17:09:03 2019 +1300 Some minor cleaning up. commit 25feb6a65dc18dc3e5fdf90e5a08b04ca7f2f5d7 Author: Alan Garny '' Date: Tue Jan 15 17:07:36 2019 +1300 Some minor cleaning up. commit 74863874b2c17e29263c20e5f509be9b6c2bc2e9 Author: Alan Garny '' Date: Tue Jan 15 17:01:26 2019 +1300 Some minor cleaning up. commit 576334f8b79619ad1694110ac4a38813d98a208c Merge: 57633a2f0 26f4a461b Author: Alan Garny '' Date: Tue Jan 15 16:15:30 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 26f4a461be5cdeac6c116dc29906699e566afbfc Merge: 7f3aa82f0 30d0e1709 Author: Alan Garny '' Date: Tue Jan 15 15:30:09 2019 +1300 Some minor cleaning up. commit 30d0e1709278dabb0e711d0b878e8769359220a2 Author: Alan Garny '' Date: Tue Jan 15 15:09:23 2019 +1300 Some minor cleaning up. commit 57633a2f06bdbd419773154fe068e84361b7db08 Merge: cb3c9a02c 7f3aa82f0 Author: Alan Garny '' Date: Tue Jan 15 14:52:22 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit 7f3aa82f05fd63792a05a7afca14b94220ba1577 Merge: ee7db95e5 cab411350 Author: Alan Garny '' Date: Tue Jan 15 14:49:38 2019 +1300 Some minor cleaning up. commit cab4113501bd9e72a3703895b84ece8d42d61d82 Author: Alan Garny '' Date: Tue Jan 15 14:34:42 2019 +1300 Some minor cleaning up. commit cb3c9a02ca013a74183002e2e0c6650ccf208553 Author: Alan Garny '' Date: Mon Jan 14 15:19:47 2019 +1300 Build LibGit2 '(#1801).' commit 62fc7b2a3c42f06cc703a0611519edfad697096b Author: Alan Garny '' Date: Mon Jan 14 15:17:42 2019 +1300 Only build LibGit2 '(#1801).' commit 039e89ef8c8b929b9cdd0562f116b84bcd1e97da Author: Alan Garny '' Date: Mon Jan 14 15:15:43 2019 +1300 OpenSSL: binaries for version 1.1.1a '(#1801).' commit 37bf3986f1d04bf2e3e3a45ff40e4362e997d214 Author: Alan Garny '' Date: Mon Jan 14 14:52:10 2019 +1300 Only build OpenSSL '(#1801).' commit 91265a3281d9266fb19131ab1a2d2f91fa8b0b9e Author: Alan Garny '' Date: Mon Jan 14 14:51:01 2019 +1300 Make sure OpenSSL 1.1.1 can be found on Windows '(#1801).' commit 49e90fe203f8449b20a22026c6f5681268f9bcb0 Author: Alan Garny '' Date: Mon Jan 14 10:31:46 2019 +1300 Some minor cleaning up. commit 5f555ab722cc57b5cea443cf805641b55e1d81dd Author: Alan Garny '' Date: Fri Jan 11 15:36:20 2019 +1300 Only build LibGit2 '(#1801).' commit 5ed535a46a63e47b4c38fcf6a2a9a5f497073c6d Author: Alan Garny '' Date: Fri Jan 11 15:33:04 2019 +1300 OpenSSL: binaries for version 1.1.1a '(#1801).' commit c47c404b4b8eed6bf2c79061e4b9addbf60601f0 Author: Alan Garny '' Date: Fri Jan 11 15:09:14 2019 +1300 Only build OpenSSL '(#1801).' commit 58fa365f5680fd03b4d31470f60c27ca4b50870d Author: Alan Garny '' Date: Fri Jan 11 15:05:40 2019 +1300 Build LibGit2 '(#1801).' commit 72aa82e0c769e4c9e8d9577106da3e9f4e8417dc Author: Alan Garny '' Date: Fri Jan 11 15:04:12 2019 +1300 OpenSSL: binaries for version 1.1.1a '(#1801).' commit e066fd2059e75243ae3204b0bf5cf6bec0a865dd Author: Alan Garny '' Date: Fri Jan 11 14:32:12 2019 +1300 OpenSSL: upgraded to version 1.1.1a '(#1801).' commit 46373bd15ee721ba99fd6ccfdc929b5eab171393 Merge: 47de48076 ee7db95e5 Author: Alan Garny '' Date: Fri Jan 11 14:24:54 2019 +1300 Merge branch ''\''master'\''' into issue1801. commit ee7db95e5567ff8d2f7bd6aaa81c2015d2e571ec Merge: 3375ee44a faa40cb12 Author: Alan Garny '' Date: Fri Jan 11 14:00:36 2019 +1300 Mesa: upgraded to version 18.2.8 '(closes' '#1945).' commit faa40cb12fb0726c7676bde5254e24aecfbe6f79 Author: Alan Garny '' Date: Fri Jan 11 13:42:09 2019 +1300 Slight update to our downloads page '(#1945).' commit c4af566ffd88c0424d0a535f1850ff5dcce250f2 Author: Alan Garny '' Date: Fri Jan 11 13:41:00 2019 +1300 Revert '"Build' Mesa '(on' 'Linux)' '(#1945)."' This reverts commit 7aece31384ceb30a6a6427bff4c735043ef0bda0. commit 7143490296e771ce01795b6bd29a66cf411373b1 Author: Alan Garny '' Date: Fri Jan 11 13:40:37 2019 +1300 Mesa: binary for version 18.2.8 '(#1945).' commit 0485a6ecbb49dca487680b9cdefe0f393f0e1dcf Author: Alan Garny '' Date: Fri Jan 11 13:34:07 2019 +1300 Mesa: upgraded to version 18.2.8 '(#1945).' commit 7aece31384ceb30a6a6427bff4c735043ef0bda0 Author: Alan Garny '' Date: Fri Jan 11 13:33:29 2019 +1300 Build Mesa '(on' 'Linux)' '(#1945).' commit 3375ee44a4ea264d61cfebe86b5a5acadf6e1350 Merge: 94e9a3ee9 d54d4e355 Author: Alan Garny '' Date: Fri Jan 11 13:14:50 2019 +1300 Satisfy Xcode analysis. commit d54d4e3559f3b0e2f606ed771cd6bd69cb960d92 Author: Alan Garny '' Date: Fri Jan 11 12:29:31 2019 +1300 PMR window: make Xcode happy. Indeed, it was complaining that '`item`' could be null, even though it $'couldn\342\200\231t' be in practice. Still, better be safe than sorry. commit 89020ecc48bd2fa4fc0c7fbb8679c45f460e0368 Author: Alan Garny '' Date: Fri Jan 11 12:25:33 2019 +1300 Data store: make Xcode happy. Indeed, it was complaining about '`hierarchyItem`' being potentially null, which technically speaking could have happened indeed, even though it never does. commit 7167821d5312634569b98c9073cdce5f30dc814f Author: Alan Garny '' Date: Fri Jan 11 12:06:18 2019 +1300 Some minor cleaning up and also make Xcode happy. Indeed, it was complaining about odeSolverInterface being potentially null in our 'for()' loop. commit 06e4e523be9e19f6c76040530bcd9ce62debe710 Author: Alan Garny '' Date: Fri Jan 11 12:00:16 2019 +1300 Simulation Experiment view: keep Xcode happy. commit f71c3d063eb8f49f411843bfc89cf32d61d42c71 Author: Alan Garny '' Date: Fri Jan 11 11:33:05 2019 +1300 Main window: keep Xcode happy. See https://stackoverflow.com/a/14901611 for some background about this. commit 80dc9fc0c18b6bbccf50ea5229d8e424c767e4c1 Author: Alan Garny '' Date: Fri Jan 11 10:54:23 2019 +1300 PMR Web Service: slight reworking of our code to please Xcode. Indeed, although it never happens, Xcode considers that there is a potential risk of memory leak with '`workspace`' in 'PmrWebService::workspaceInformationResponse().' So, better please Xcode and be safe rather potentially sorry. commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f Author: Alan Garny '' Date: Fri Jan 11 10:25:43 2019 +1300 File Organiser window: slightly reworked the loading/saving of settings. Indeed, we used to track the index of an $'item\342\200\231s' parent item, but we $'don\342\200\231t' actually need to do that. This also means that we had to put a safeguard in 'FileOrganiserWindowModel::decodeHierarchyData()' since otherwise OpenCOR would crash if it was to retrieve some settings that were stored using the old format. In the end, that safeguard is a good thing to have no matter what, so $'that\342\200\231s' fine. commit 3c77afc71b5888287220ee7bc8252a6cf7ffe8d3 Author: Alan Garny '' Date: Fri Jan 11 10:17:04 2019 +1300 Central widget: slight reworking to please Xcode. It was indeed complaining about '`mode`' being potentially null. commit 124e80bf55fb8f92a3f6ec5a03e2f652b97a401b Author: Alan Garny '' Date: Fri Jan 11 10:02:18 2019 +1300 File Organiser window: reworked the code a bit to please Xcode. $'It\342\200\231s' because we used to test pParentItem, so Xcode would think that there could be a memory leak for fileItem '(and,' I imagine, folderItem too, although Xcode $'didn\342\200\231t' report anything about 'it).' commit d0f143b6e6f35aec27d177b68d152081e2abaaa8 Author: Alan Garny '' Date: Thu Jan 10 18:37:51 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than 'sorry!' commit c5ad284fbf3db30cc1c8ef5434788ca616e44089 Author: Alan Garny '' Date: Thu Jan 10 18:33:37 2019 +1300 Some minor cleaning up. commit bd3345d0984248211ce93c8abd5f16eba4c9e712 Author: Alan Garny '' Date: Thu Jan 10 18:00:04 2019 +1300 'Don'\''t' need this anymore. Note that this should not have been needed in the first place, so if the problem ever occurs again then we will need to find the cause of it rather than come with that kind of trick. commit d3bbcb6028e530b9418a1d6f04486835cbb11f4f Author: Alan Garny '' Date: Thu Jan 10 17:56:15 2019 +1300 Cleaned up some dodgy code. Thanks to $'Xcode\342\200\231s' $'analysis\342\200\246' commit ac371389e8284440387b202ec014220cb281f042 Author: Alan Garny '' Date: Thu Jan 10 17:48:41 2019 +1300 Some minor cleaning up. commit 1430ab0375da2e94a94768951ad5f3cac342f972 Author: Alan Garny '' Date: Thu Jan 10 17:25:58 2019 +1300 Added an updated comment re the style of 'TabBarWidget().' commit b6f5ab29bc5eb94c4a0b2c7206e9c3a365758dbe Author: Alan Garny '' Date: Thu Jan 10 17:25:27 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than 'sorry!' commit 94e9a3ee91a01aec691236a282b1db147ea89e41 Merge: 081c89c93 a7259b2d2 Author: Alan Garny '' Date: Thu Jan 10 16:47:44 2019 +1300 Simplified our use of 'pEvent->modifiers().' commit a7259b2d2fe20f608db0898f974cdbded13ca800 Author: Alan Garny '' Date: Thu Jan 10 16:31:46 2019 +1300 Simplified our use of 'pEvent->modifiers().' Regarding 'EditorWidgetEditorWidget::keyPressEvent(),' we should never have tested for Qt::Key_Tab since pressing it within a highlighted word should result in that word not being highlighted anymore. Similarly, pressing Qt::Key_Backtab on a non-highlighted word may result in it being highlighted. Otherwise, still in 'EditorWidgetEditorWidget::keyPressEvent(),' we $'don\342\200\231t' need to test for the arrow keys anymore since we test for Qt::NoModifier and arrow keys rely on Qt::KeypadModifier. commit 081c89c937466069d295fbd4a28fc9fe4d41c2f0 Merge: c725de49c ecf8a5bc4 Author: Alan Garny '' Date: Thu Jan 10 11:47:23 2019 +1300 Graph Panel widget: fixed a small problem with the scale range of an axis in some cases '(closes' '#1941).' commit ecf8a5bc4ba6b4dcb6ce798f5f60595fa2494147 Author: Alan Garny '' Date: Thu Jan 10 11:26:48 2019 +1300 Slight updates to our downloads and what is new pages '(#1941).' commit 7e864458223bc3a46f3106fcd31c5a4e72f62b1c Author: Alan Garny '' Date: Thu Jan 10 11:13:18 2019 +1300 Replaced our remaining calls to 'qIsNull()' with 'qFuzzyIsCompare().' When it comes to 'GraphPanelPlotWidget::optimizeAxis()' '(and' our original call to 'qIsNull(pMin-pMax)),' this is what was causing the problem reported in issue '#1941.' commit 193fd7d6eef4587b6ec11ee7e1024fec56758740 Author: Alan Garny '' Date: Thu Jan 10 11:04:43 2019 +1300 Replace some of our calls to 'qIsNull()' with 'qFuzzyIsNull()' or 'qFuzzyIsNull().' commit 2a09c0cb15dcb59e2e748e23c6a850c33861191f Author: Alan Garny '' Date: Thu Jan 10 10:51:38 2019 +1300 Some minor cleaning up. commit da1b9154d467ae6a5ab876d5b365688f69684636 Merge: d3638c2d7 c725de49c Author: David Brooks '' Date: Thu Jan 10 10:39:16 2019 +1300 Merge branch ''\''master'\''' into pythonplugin commit c725de49cf029e182afaa9ced194205763520ca8 Merge: 4f69a99eb 2cdb6cb21 Author: Alan Garny '' Date: Wed Jan 9 18:43:21 2019 +1300 Make sure that 'FileManager::checkFiles()' properly handles files that have been deleted. commit 2cdb6cb21dbb9037ec978b8dc6f5dfe802b2e7d7 Author: Alan Garny '' Date: Wed Jan 9 18:15:48 2019 +1300 Make sure that 'FileManager::checkFiles()' properly handles files that have been deleted. commit 4f69a99eb648551fc935a0b6976518b0975160e6 Merge: 7a389dfd9 31fd029e2 Author: Alan Garny '' Date: Wed Jan 9 18:07:40 2019 +1300 Slight improvement to some of our test CellML files. commit 31fd029e298030c66255d929907dc96a41f09fdc Author: Alan Garny '' Date: Mon Jan 7 10:50:30 2019 +1300 Made our simple_dae_model.cellml really a DAE model. commit 2c6cfab8062a1da9105bf9f78b6f632dc6f95980 Author: Alan Garny '' Date: Mon Jan 7 10:17:36 2019 +1300 Slight cleaning up of our parabola_dae_model.cellml test file. commit 7a389dfd9ccf1abefcf031b13c49a77c403ba830 Author: Alan Garny '' Date: Fri Jan 4 19:53:01 2019 +1300 Some minor cleaning up. commit 30cd45793f5ba78727fb6d4e888c2ecb67ac8b0a Merge: c256dbb80 63c83b6e9 Author: Alan Garny '' Date: Fri Jan 4 19:02:33 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit 63c83b6e935aac1316ba92761d976f5732bc7500 Author: Alan Garny '' Date: Fri Jan 4 18:46:39 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit fca4fe752b32a76870a92f811cdf37b1f4a56d45 Author: Alan Garny '' Date: Fri Jan 4 16:37:16 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit c256dbb805a5a11a9146beae53b51e846de036a2 Merge: a2bf47c09 8d246a5c1 Author: Alan Garny '' Date: Fri Jan 4 16:07:53 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit 8d246a5c1aec2a0a394241bcb79be2a4c353f329 Author: Alan Garny '' Date: Fri Jan 4 15:12:32 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit dad8d2374defafe4f23722075dea69e201492b01 Author: Alan Garny '' Date: Fri Jan 4 15:10:20 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit a2bf47c094f697b8c44276026f613f5b1b0a3d77 Merge: 1b7e6536c 168235ea7 Author: Alan Garny '' Date: Thu Jan 3 11:14:24 2019 +1300 Qwt: upgraded to version 6.1.4 '(closes' '#1933).' commit 168235ea766acb9eda2c87cde049593a5f03372a Author: Alan Garny '' Date: Thu Jan 3 10:57:51 2019 +1300 Slight update to our downloads page '(#1933).' commit 2d9127f689ea6dbd27b04dc0bcb7fa8015c5dc22 Author: Alan Garny '' Date: Thu Jan 3 10:53:25 2019 +1300 Revert '"Only' build our Qwt package '(#1933)."' This reverts commit 084f5f23b127ba1f8eeca236d349a4ee97920202. commit b6e09eaf689dae6ba2a1d5244418f5295d359a19 Author: Alan Garny '' Date: Thu Jan 3 10:53:07 2019 +1300 Qwt: binaries for version 6.1.4 '(#1933).' commit 55a96082a6a5bd285fcb30b7322b3705f9065b70 Author: Alan Garny '' Date: Thu Jan 3 10:26:57 2019 +1300 Qwt: upgraded to version 6.1.4 '(#1933).' commit 084f5f23b127ba1f8eeca236d349a4ee97920202 Author: Alan Garny '' Date: Thu Jan 3 10:25:00 2019 +1300 Only build our Qwt package '(#1933).' commit 1b7e6536c4ad2b47030dfdeb33a06a81008bd883 Merge: fac9d8b61 d3e8fb4a3 Author: Alan Garny '' Date: Sat Dec 22 14:14:46 2018 +1300 QScintilla: improved the build system '(closes' '#1931).' commit d3e8fb4a3dd76a3f54341e1b8c7df688b1234114 Author: Alan Garny '' Date: Sat Dec 22 13:25:11 2018 +1300 Some minor cleaning up. commit 88bbf546ea6818018849e5c8a4fb921edcb431a2 Author: Alan Garny '' Date: Sat Dec 22 12:49:51 2018 +1300 Some minor cleaning up. commit 780e92ff61e842853edc8254dd894c028babcf18 Author: Alan Garny '' Date: Sat Dec 22 12:40:58 2018 +1300 Some minor cleaning up. commit e11b63ffc880abcf1d9e09e4b6178a33d4499878 Author: Alan Garny '' Date: Sat Dec 22 11:28:03 2018 +1300 Some minor cleaning up. commit 2cbd4207c900951d28a39191da7f7f11ab8ae053 Author: Alan Garny '' Date: Sat Dec 22 11:11:15 2018 +1300 Some minor cleaning up. commit 261ac2be28d00ac4089f1b38cf88240fe4b6809b Author: Alan Garny '' Date: Sat Dec 22 10:18:48 2018 +1300 No need to define QSCINTILLA_DLL anymore '(#1931).' commit df3a5a2c607eea9394943769191215c26b7a38c6 Author: Alan Garny '' Date: Sat Dec 22 10:17:34 2018 +1300 'Don'\''t' only build our QScintilla package. commit dd50324e9dce33555f57785b4b9721a1f549f829 Author: Alan Garny '' Date: Sat Dec 22 10:17:05 2018 +1300 QScintilla: new binaries for version 2.10.8 '(#1931).' commit dada31aaf57d9ff3d1729f61c7922497c60b5d51 Author: Alan Garny '' Date: Sat Dec 22 09:59:37 2018 +1300 Only build our QScintilla package. commit d7f276fdef7846369710dd80c879c949208b2052 Author: Alan Garny '' Date: Sat Dec 22 09:54:17 2018 +1300 Only build our QScintilla package. commit fac9d8b6183d547f5b1ed32047d2c6665523fe29 Merge: 52bb31285 b54a7049f Author: Alan Garny '' Date: Fri Dec 21 23:20:30 2018 +1300 SUNDIALS: upgraded to version 4.0.1 '(closes' '#1929).' commit b54a7049f2e054333aa6348b47e71bb019b15a31 Author: Alan Garny '' Date: Fri Dec 21 19:49:15 2018 +1300 Revert '"Only' build our SUNDIALS package '(#1929)."' This reverts commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e. commit 03cea5b128d04ae74e715ba5e5be4cc6dee51b4d Author: Alan Garny '' Date: Fri Dec 21 16:39:24 2018 +1300 Slight update to our downloads page '(#1929).' commit 0e467cea606b514edc78d76b092436e0d9f736a6 Author: Alan Garny '' Date: Fri Dec 21 16:38:15 2018 +1300 SUNDIALS: binaries for version 4.0.1 '(#1929).' commit 7e425b2320385666133a7770624f0cef625e600c Merge: cb4d56488 52bb31285 Author: Alan Garny '' Date: Fri Dec 21 16:33:36 2018 +1300 Merge branch ''\''master'\''' into issue1929. commit 52bb312850376f8f70c3d5f7e9303f28bd3df2b1 Merge: 3ca47ac0f 1ad5d407c Author: Alan Garny '' Date: Fri Dec 21 16:32:51 2018 +1300 C++ improvements to the code '(closes' '#1924).' commit cb4d564880678f860b89ae70c25399f83fc644a0 Author: Alan Garny '' Date: Fri Dec 21 16:31:23 2018 +1300 SUNDIALS: upgraded to version 4.0.1 '(#1929).' commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e Author: Alan Garny '' Date: Fri Dec 21 16:27:54 2018 +1300 Only build our SUNDIALS package '(#1929).' commit 1ad5d407c92c2db834a68c4251e1cfb55f1245e6 Author: Alan Garny '' Date: Fri Dec 21 16:16:20 2018 +1300 Some minor cleaning up. Prevent any possible ambiguity. commit 3f62d24a21ad8bf9628a17922a41c4a9307b0d63 Author: Alan Garny '' Date: Fri Dec 21 15:50:38 2018 +1300 C++: replaced our use of Qt 'foreach()' loops with that of range-based 'for()' loops '(#1924).' Prevent a crash when: - Opening a file in 'OpenCOR;' - Deleting the 'file;' and - Going back to OpenCOR and agreeing to closing the file. commit 3ca47ac0f85d7fc5352e0df2ee3ce24635388820 Merge: a5ec7aeee 21a160179 Author: Alan Garny '' Date: Fri Dec 21 14:44:31 2018 +1300 CellML Text view: improved Unicode support '(closes' '#1926).' commit 21a1601798f33ccf9fb1a35ab5cdf7ba448bd258 Author: Alan Garny '' Date: Fri Dec 21 14:11:57 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer '(#1926).' commit 507781cb78dada20180d669017db77267cff90ff Author: Alan Garny '' Date: Fri Dec 21 11:26:28 2018 +1300 Slight update to our what is new and downloads pages '(#1926).' commit 02c6e420d659471c5cbefdb98af9c512a728052f Author: Alan Garny '' Date: Fri Dec 21 11:11:51 2018 +1300 CellML Text viewer: fixed a problem with Unicode characters '(#1926).' commit 2b5f948342e80a1960e7428225d5a4fb90acbd81 Author: Alan Garny '' Date: Fri Dec 21 10:34:07 2018 +1300 CellML Text view: save time when updating our viewer by checking whether we are within a comment '(#1926).' commit 1831f686c9fa0fafb3e7bdbb9cf49a4ad67f7bcd Author: Alan Garny '' Date: Fri Dec 21 09:57:55 2018 +1300 Some minor cleaning up. commit 3942400730d1edd445f803a95e461db41c4b1f07 Author: Alan Garny '' Date: Fri Dec 21 09:24:36 2018 +1300 Some minor cleaning up. commit a712f9aa0254a55868f954d374c9d35d5cf2ca28 Author: Alan Garny '' Date: Fri Dec 21 09:23:59 2018 +1300 Some minor cleaning up. commit fee86ec3405eb8199776c2cde6e6f6d3b709a7ec Author: Alan Garny '' Date: Thu Dec 20 17:48:33 2018 +1300 Some minor cleaning up. commit 716b108d5ca68dd74789d3775fa71275cbcf984c Author: Alan Garny '' Date: Thu Dec 20 17:20:29 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer '(#1926).' commit 18f1e13b6e36469ae99053a8a120b47af8bc717e Author: Alan Garny '' Date: Thu Dec 20 10:50:13 2018 +1300 Some minor cleaning up. commit b824423fb0bcefc884429e9bc023437775489c4c Author: Alan Garny '' Date: Thu Dec 20 10:49:02 2018 +1300 Some minor cleaning up. commit a5ec7aeee9c6df6ca18fcec7757867a14f5f29ac Merge: 40acc0ab0 02dd839b5 Author: Alan Garny '' Date: Wed Dec 19 16:56:37 2018 +1300 C++ improvements to the code '(closes' '#1924).' commit 02dd839b585d9f47222f85e20e176c9da942975b Author: Alan Garny '' Date: Wed Dec 19 16:38:19 2018 +1300 C++: replaced our use of 'for()' loops with iterators with that of range-based 'for()' loops whenever possible '(#1924).' commit d5640ea6527dbee5e98ffa218509de160a76b70f Author: Alan Garny '' Date: Wed Dec 19 16:18:19 2018 +1300 C++: replaced our use of Qt 'foreach()' loops with that of range-based 'for()' loops '(#1924).' commit a82ba81a7008b4d6bb01b55cf24819b4c3dc10e3 Author: Alan Garny '' Date: Wed Dec 19 16:16:59 2018 +1300 C++: replaced our use of Qt 'foreach()' loops with that of range-based 'for()' loops '(#1924).' commit 47de480761d6aaa99114db579155d49cb7473753 Merge: db36f196e 40acc0ab0 Author: Alan Garny '' Date: Tue Dec 18 16:33:09 2018 +1300 Merge branch ''\''master'\''' into issue1801. commit 81c0c8614c3cd9a299c2a2b61a568f2e4a121aa4 Merge: a914d15bb 40acc0ab0 Author: Alan Garny '' Date: Tue Dec 18 16:29:22 2018 +1300 Merge remote-tracking branch ''\''opencor/master'\''' into issue1845. commit d3638c2d7d40b591dd6e66a855e0b6962ba66812 Author: David Brooks '' Date: Tue Dec 18 13:07:21 2018 +1300 Upgrade SciPy to version 1.1.0. commit 6c0fae07a40e244054985728384a0282b88b0609 Merge: 1adb1399d 40acc0ab0 Author: David Brooks '' Date: Tue Dec 18 11:14:05 2018 +1300 Merge branch ''\''master'\''' into pythonplugin commit 1adb1399d504e77d28d5dcace645466556bc2ffc Author: David Brooks '' Date: Tue Dec 18 11:12:02 2018 +1300 Python: fix bad import with '`matplotlib`' under '`PythonQt`.' commit 40acc0ab0a6e26114f8c5c32f8b890c56d1d360c Merge: 98682ceda 4a505b9a8 Author: Alan Garny '' Date: Mon Dec 17 18:19:46 2018 +1300 SUNDIALS: upgraded to version 4.0.0 '(closes' '#1919).' commit 4a505b9a848312d512fd1e703d6c2bc8d2538102 Author: Alan Garny '' Date: Mon Dec 17 17:55:30 2018 +1300 CVODES and KINSOL: updated our code for version 4.0.0 of SUNDIALS '(#1919).' commit 9ed36cee7f9a834e2d99b8b8cfba9f26a1732e86 Author: Alan Garny '' Date: Mon Dec 17 16:35:51 2018 +1300 Some minor cleaning up. commit 4e9ff4bf021d55b806c4b1981c1c2f82f3ee61d9 Author: Alan Garny '' Date: Mon Dec 17 14:39:04 2018 +1300 Slight update to our downloads page '(#1919).' commit c3001dc7f8f42b907148e41c9a2902eec6f296ac Author: Alan Garny '' Date: Mon Dec 17 14:36:42 2018 +1300 Revert '"Only' build our SUNDIALS package '(#1919)."' This reverts commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce. commit 09335dc44c61f928aaaa49e8f513cfe6dd54cfec Author: Alan Garny '' Date: Mon Dec 17 14:31:41 2018 +1300 SUNDIALS: binaries for version 4.0.0 '(#1919).' commit 8e881b68f83db6f7e9a376e15d9e90fa45360085 Author: Alan Garny '' Date: Mon Dec 17 14:26:07 2018 +1300 SUNDIALS: upgraded to version 4.0.0 '(#1919).' commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce Author: Alan Garny '' Date: Mon Dec 17 13:58:00 2018 +1300 Only build our SUNDIALS package '(#1919).' commit 98682ceda1c86f0393b99e17ed49f7a7b9a87b16 Merge: e48574785 2f6a1e355 Author: Alan Garny '' Date: Mon Dec 17 13:56:10 2018 +1300 Mesa: upgraded to version 18.2.7 '(closes' '#1918).' commit 2f6a1e35579c4ee900292dbd26f7231d845dd885 Author: Alan Garny '' Date: Mon Dec 17 13:36:15 2018 +1300 Slight update to our downloads page '(#1918).' commit 6ae4001193e14665cd94c91784a02a1b92e0c088 Author: Alan Garny '' Date: Mon Dec 17 13:33:20 2018 +1300 Revert '"Only' build our Mesa package '(#1918)."' This reverts commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5. commit debefbd755ae0c1812c2160630ade20ec359de55 Author: Alan Garny '' Date: Mon Dec 17 13:33:01 2018 +1300 Mesa: binary for version 18.2.7 '(#1918).' commit 76d5ce4a976b62c163ea3ddc46fc4a8a798a3079 Author: Alan Garny '' Date: Mon Dec 17 13:27:36 2018 +1300 Mesa: upgraded to version 18.2.7 '(#1918).' commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5 Author: Alan Garny '' Date: Mon Dec 17 13:26:45 2018 +1300 Only build our Mesa package '(#1918).' commit e4857478563da09c51963f35a6dd37c27fd7eba3 Merge: 5ee22f8d5 8283fae19 Author: Alan Garny '' Date: Mon Dec 17 13:24:27 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 '(closes' '#1917).' commit 8283fae19850c34139a941fd21abf0908946bca6 Author: Alan Garny '' Date: Mon Dec 17 13:07:31 2018 +1300 LLVM+Clang: Windows binaries for version 7.0.1 '(#1917).' commit e4d05e1257b3e8b793f212cf0bc35fa0fa3d8c2b Author: Alan Garny '' Date: Mon Dec 17 11:26:00 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 '(#1917).' commit 8c00d626e9e86afba465df29813e5150a58c8768 Author: Alan Garny '' Date: Mon Dec 17 11:18:37 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 '(#1917).' commit bd6f8c4f1c5316f7ae960bea2b1aa891446e40bf Author: Alan Garny '' Date: Mon Dec 17 10:54:48 2018 +1300 Slight update to our downloads page '(#1917).' commit ff9ba6a506339b822df9e184fd99195d094a242a Author: Alan Garny '' Date: Mon Dec 17 10:39:26 2018 +1300 Revert '"Only' build our LLVM+Clang package '(#1917)."' This reverts commit 13153533b6de8c9a7288ee767012f1b7528fa6ca. commit 2665d65b1ec3a75a1ca844b101964b01572cc32d Author: Alan Garny '' Date: Mon Dec 17 10:39:05 2018 +1300 LLVM+Clang: macOS binary for version 7.0.1 '(#1917).' commit 614fba4f68f5042d860d7400d85a2b489c7f564a Author: Alan Garny '' Date: Mon Dec 17 09:37:10 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 '(#1917).' commit 13153533b6de8c9a7288ee767012f1b7528fa6ca Author: Alan Garny '' Date: Mon Dec 17 09:16:46 2018 +1300 Only build our LLVM+Clang package '(#1917).' commit a914d15bb79d6902c18d56b6ab2e84a89c93e1f8 Merge: ca8b1e807 5ee22f8d5 Author: Alan Garny '' Date: Sat Dec 15 12:48:31 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 5ee22f8d50015d7b50b51cd63dc80be34ee800eb Merge: 5ea5974a0 9d05b90c2 Author: Alan Garny '' Date: Sat Dec 15 12:45:30 2018 +1300 Qt: upgraded to version 5.12.0 '(closes' '#1910).' commit 9d05b90c23e8e47c54ed4c040a2f24da6151e47f Author: Alan Garny '' Date: Sat Dec 15 11:47:32 2018 +1300 Some minor cleaning up '(#1910).' Not only that, but it prevents some compilation errors on Windows using Qt 5.12.0 LTS: '[4/19]' Performing update step for ''\''developerDocumentationBuild'\''' Current branch master is up to date. '[5/19]' Performing update step for ''\''userDocumentationBuild'\''' Current branch master is up to date. '[6/19]' Building CXX object 'src\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\tests\t' ests.cpp.obj FAILED: src/plugins/miscellaneous/Compiler/CMakeFiles/Compiler_tests.dir/tests/t ests.cpp.obj D:/Programming/OpenCOR/build/clcachewrapper 'C:\PROGRA~2\MICROS~2.0\VC\bin\amd64\cl.exe' /nologo /TP '@src\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\tests\' tests.cpp.obj.rsp /showIncludes '/Fosrc\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\test' 's\tests.cpp.obj' '/Fdsrc\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir\' /FS -c '..\src\plugins\miscellaneous\Compiler\tests\tests.cpp' 'C:\Program' Files '(x86)\Microsoft' Visual Studio '14.0\VC\INCLUDE\bitset(101):' error C2666: ''\''operator' '/'\'':' 11 overloads have similar conversions 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector4d.h(281):' note: could be ''\''const' QVector4D operator '/(const' QVector4D '&,const' QVector4D '&)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector4d.h(276):' note: or ''\''const' QVector4D operator '/(const' QVector4D '&,float)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector3d.h(281):' note: or ''\''const' QVector3D operator '/(const' QVector3D '&,const' QVector3D '&)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector3d.h(276):' note: or ''\''const' QVector3D operator '/(const' QVector3D '&,float)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector2d.h(256):' note: or ''\''const' QVector2D operator '/(const' QVector2D '&,const' QVector2D '&)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qvector2d.h(251):' note: or ''\''const' QVector2D operator '/(const' QVector2D '&,float)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtGui/qtransform.h(402):' note: or ''\''QTransform' operator '/(const' QTransform '&,qreal)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qsize.h(364):' note: or ''\''const' QSizeF operator '/(const' QSizeF '&,qreal)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qsize.h(194):' note: or ''\''const' QSize operator '/(const' QSize '&,qreal)'\''' 'c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(427):' note: or ''\''QMarginsF' operator '/(const' QMarginsF '&,qreal)'\''' 'c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(213):' note: or ''\''QMargins' operator '/(const' QMargins '&,qreal)'\''' 'c:\qt\5.12.0\msvc2015_64\include\qtcore\qmargins.h(207):' note: or ''\''QMargins' operator '/(const' QMargins '&,int)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(205):' note: or ''\''double' operator '/(int,qfloat16)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(205):' note: or ''\''double' operator '/(qfloat16,int)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(195):' note: or ''\''float' operator '/(float,qfloat16)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(195):' note: or ''\''float' operator '/(qfloat16,float)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(194):' note: or ''\''double' operator '/(double,qfloat16)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(194):' note: or ''\''double' operator '/(qfloat16,double)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(193):' note: or ''\''long' double operator '/(long' 'double,qfloat16)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(193):' note: or ''\''long' double operator '/(qfloat16,long' 'double)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qfloat16.h(176):' note: or ''\''qfloat16' operator '/(qfloat16,qfloat16)' 'noexcept'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qpoint.h(402):' note: or ''\''const' QPointF operator '/(const' QPointF '&,qreal)'\''' 'C:\Qt\5.12.0\msvc2015_64\include\QtCore/qpoint.h(206):' note: or ''\''const' QPoint operator '/(const' QPoint '&,qreal)'\''' 'C:\Program' Files '(x86)\Microsoft' Visual Studio '14.0\VC\INCLUDE\bitset(101):' note: while trying to match the argument list ''\''(std::size_t,' ')'\''' 'C:\Program' Files '(x86)\Microsoft' Visual Studio '14.0\VC\INCLUDE\bitset(100):' note: while compiling class template member function ''\''bool' 'std::bitset<59>::_Subscript(std::size_t)' 'const'\''' 'C:\Program' Files '(x86)\Microsoft' Visual Studio '14.0\VC\INCLUDE\bitset(108):' note: see reference to function template instantiation ''\''bool' 'std::bitset<59>::_Subscript(std::size_t)' 'const'\''' being compiled '..\src\plugins\thirdParty\LLVMClang\ext\release\include\llvm/IR/Attribut' 'es.h(683):' note: see reference to class template instantiation ''\''std::bitset<59>'\''' being compiled '[7/19]' Performing configure step for ''\''developerDocumentationBuild'\''' -- Configuring done -- Generating done -- Build files have been written to: D:/Programming/OpenCOR/build/ext/Build/developerDocumentationBuild '[8/19]' Performing configure step for ''\''userDocumentationBuild'\''' -- Configuring done -- Generating done -- Build files have been written to: D:/Programming/OpenCOR/build/ext/Build/userDocumentationBuild ninja: build stopped: subcommand failed. 'D:\Programming\OpenCOR\build>' commit fa46f06e5e7ff41db6377dec5c9616f88a01c334 Author: Alan Garny '' Date: Fri Dec 14 23:56:38 2018 +1300 Revert '"Build' QtWebKit with Qt 5.12.0 LTS '(#1910)."' This reverts commit bea64a0f9acfd5560c19e625699cc5eeb351bc75. commit 66c8db8d8e7ff5d650e25d4c7edd7203a64bb2fd Author: Alan Garny '' Date: Fri Dec 14 23:41:35 2018 +1300 Slight update to our downloads page '(#1910).' commit 5b2448b5ec7ae6cfedfcb9cc88d439ea524f85fc Author: Alan Garny '' Date: Fri Dec 14 23:36:39 2018 +1300 QtWebKit: binaries that ar compatible with Qt 5.12.0 LTS '(#1910).' commit bea64a0f9acfd5560c19e625699cc5eeb351bc75 Author: Alan Garny '' Date: Fri Dec 14 20:33:41 2018 +1300 Build QtWebKit with Qt 5.12.0 LTS '(#1910).' commit 94fbd1a6efd8c362a1ea6641aa298d533fdded78 Author: Alan Garny '' Date: Fri Dec 14 18:17:09 2018 +1300 Some minor cleaning up '(#1910).' commit 401cf67933be4a36c7f669f28f4bfda3970bb996 Merge: 50f90fb0d 5ea5974a0 Author: Alan Garny '' Date: Fri Dec 14 09:54:47 2018 +1300 Merge branch ''\''master'\''' into issue1910. commit 5ea5974a0a5d64c4a83c8163483e6dd371b1c624 Author: Alan Garny '' Date: Fri Dec 14 09:54:07 2018 +1300 Some minor cleaning up. commit 50f90fb0d8e0a959d03c709cd67dc7ccc6c3ac55 Merge: ab80195d0 f174e1b71 Author: Alan Garny '' Date: Thu Dec 13 14:15:20 2018 +1300 Merge branch ''\''master'\''' into issue1910. commit f174e1b71b8143305f505c02b0358690ad29e6c0 Merge: 4364fcd65 63d9f6a6f Author: Alan Garny '' Date: Thu Dec 13 14:08:22 2018 +1300 COMBINE support: now recognise files that have a master attribute of '"1"' '(rather' than '"true")' '(closes' '#1912).' commit 63d9f6a6f2b0cf78055ce98a0e16d6c3e913dbe8 Author: Alan Garny '' Date: Thu Dec 13 13:16:09 2018 +1300 Slight update to our what is new page '(#1912).' commit e87bf1535486548211c096963b7a2c83a3f69c52 Author: Alan Garny '' Date: Thu Dec 13 13:14:29 2018 +1300 Slight update to our downloads page '(#1912).' commit 092334ec394d75f9c828df84d8f8c47c014ff866 Author: Alan Garny '' Date: Thu Dec 13 13:14:03 2018 +1300 Slight update to our what is new page '(#1912).' commit 96ab1ed869d55ba91e6615bfe3c22c8eeb80ce46 Author: Alan Garny '' Date: Thu Dec 13 13:06:12 2018 +1300 COMBINE Archive support: now recognise files that have a master attribute of '"1"' '(#1912).' commit ab80195d019e5a544c7e34d5c314490bad96c8e6 Author: Alan Garny '' Date: Wed Dec 12 18:52:48 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS '(#1910).' commit 9439d6105bfb511fe4881225504b2a04c1bf3528 Author: Alan Garny '' Date: Wed Dec 12 18:51:24 2018 +1300 QtWebKit:Qt 5.12.0 LTS binaries for Linux and macOS '(#1910).' commit b066b81d2e72967fe25b12e98082ccc62c01367a Author: Alan Garny '' Date: Wed Dec 12 18:50:30 2018 +1300 'Don'\''t' build QtWebKit anymore. commit 91fe219f0662a72738c7451e735b861fb85260b9 Author: Alan Garny '' Date: Wed Dec 12 17:25:00 2018 +1300 Build QtWebKit with Qt 5.12.0 LTS '(#1910).' commit bfe3a3a7c09acadebb1a6bbf42fac01c57c93c56 Author: Alan Garny '' Date: Wed Dec 12 15:20:40 2018 +1300 Revert '"Temporarily' determine which styles are available in Qt 5.12.0 'LTS."' This reverts commit 9ba3aa6cf02e8ecb4708a95fdcfe305ed83e222f. commit c9ccd0eab1f36c33ff2c31aced17eb46d9e438a8 Author: Alan Garny '' Date: Wed Dec 12 15:16:30 2018 +1300 Qt: '"new"' default style on Windows '(#1910).' commit 89804c025faf026b23a97b98a4a27b3bb65d4e1d Author: Alan Garny '' Date: Wed Dec 12 15:14:05 2018 +1300 Qt: we need to deploy the Windows style plugin with Qt 5.12.0 LTS '(#1910).' commit 9ba3aa6cf02e8ecb4708a95fdcfe305ed83e222f Author: Alan Garny '' Date: Wed Dec 12 15:10:14 2018 +1300 Temporarily determine which styles are available in Qt 5.12.0 LTS. commit 7ef584fdb673efa28c8992aefac27fc76dc509a4 Author: Alan Garny '' Date: Wed Dec 12 15:04:47 2018 +1300 Qt: '"new"' default style on macOS '(#1910).' commit 71abc6b43f94c73e488564910bd089a592a4c7f3 Author: Alan Garny '' Date: Wed Dec 12 15:00:03 2018 +1300 Qt: we need to deploy the macOS style plugin with Qt 5.12.0 LTS '(#1910).' commit c3b54f6817efab5c98762379a33cd13e8fb46bfd Author: Alan Garny '' Date: Wed Dec 12 14:44:51 2018 +1300 Always show our Preferences dialog '(since' we have non-plugin specific 'preferences).' commit 35d9e3e3dabe088b930bb042d0aa67cbd4aa088d Author: Alan Garny '' Date: Wed Dec 12 14:42:34 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS '(#1910).' To try to get the screen from the position of a dialog '(our' preferences dialog for 'example)' returns nullptr. So, retrieve the screen of our main window instead, which should be fine. commit e2cfe26f061a96fc614a41e42f7c3c1dbf2445a4 Author: Alan Garny '' Date: Wed Dec 12 13:28:49 2018 +1300 Qt: the cocoa plugin now needs DBus on macOS '(#1910).' commit e6ed76b68a18fc796402bfd29436abe8c72b20af Author: Alan Garny '' Date: Wed Dec 12 12:11:04 2018 +1300 Build a bare bone version of OpenCOR. commit 70db93f328cb9e3e097becb2ab261b9a8ea6440e Author: Alan Garny '' Date: Wed Dec 12 11:58:43 2018 +1300 Reverted part of commit a20d003. commit a20d003e5f9b14aaae9642e91d7626b48400ddd4 Author: Alan Garny '' Date: Wed Dec 12 11:57:25 2018 +1300 Qt: require at least version 10.12 '(Sierra)' of macOS '(#1910).' commit 8e3c48ad3010ec37b9c7313cc8f1720615095223 Author: Alan Garny '' Date: Wed Dec 12 11:56:37 2018 +1300 Slight update to our supported platforms page now that we use Qt 5.12.0 LTS '(#1910).' commit 8a04f6b399a026ea66299312cc024fb78b62857b Merge: 07c6d254a 4364fcd65 Author: Alan Garny '' Date: Wed Dec 12 11:49:22 2018 +1300 Merge branch ''\''master'\''' into issue1910. commit 4364fcd657eda6f7c1e82c63d61b90c2a1d57911 Merge: f268d8d23 a5f18d978 Author: Alan Garny '' Date: Wed Dec 12 11:48:42 2018 +1300 Some minor cleaning up of the general documentation. commit 07c6d254a65cd9190eab4aa806fe1706134115b8 Author: Alan Garny '' Date: Wed Dec 12 11:44:45 2018 +1300 Some minor cleaning up. commit a5f18d9782ba27a325ad13c7ddcfb57ca8244a16 Author: Alan Garny '' Date: Wed Dec 12 11:27:23 2018 +1300 Some minor cleaning up of the general documentation. commit db0d0b85511cfeb5d0f9810724edf0a30d21544b Author: Alan Garny '' Date: Wed Dec 12 11:14:20 2018 +1300 Some minor cleaning up of the general documentation. commit 671bec500fb7bed288686b504627ec391dbc8552 Author: Alan Garny '' Date: Wed Dec 12 11:01:40 2018 +1300 Some minor cleaning up of the general documentation. commit 1ab227b793dc6e1c17e786542a1c150e13029751 Author: Alan Garny '' Date: Wed Dec 12 10:30:32 2018 +1300 Qt: making our code compatible with Qt 5.12.0 LTS '(#1910).' commit ca8b1e80797a2296c596ae218b0a9ddedb4c3b20 Merge: fafb8b829 f268d8d23 Author: Alan Garny '' Date: Tue Dec 11 17:57:00 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit fafb8b82999f08216a9f9bbc1b669af1aaf8ea23 Author: Alan Garny '' Date: Tue Dec 11 17:56:13 2018 +1300 Simulation Experiment view: 'don'\''t' keep track of imported data when reloading a file '(#1845).' commit f268d8d232cba2d4720f086ad0d0a3507767c12e Merge: 187525476 7bfa09e20 Author: Alan Garny '' Date: Tue Dec 11 17:41:41 2018 +1300 'Don'\''t' build an official release anymore. commit 282e914aa21415982cb0fe43445cb0a6ede5984f Merge: 5e3a865d0 7bfa09e20 Author: Alan Garny '' Date: Tue Dec 11 17:00:51 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 7bfa09e204353a1ad5ea8ae665d0a4e41c2a6005 Author: Alan Garny '' Date: Tue Dec 11 16:59:33 2018 +1300 'Don'\''t' build an official release anymore. commit 187525476caf3cf601ef5ac47b1db26236293566 Merge: 7e97ea4e8 27157992a Author: Alan Garny '' Date: Tue Dec 11 16:45:18 2018 +1300 Supported platforms. commit 27157992ab382c0cb952e1bd05c2dd0081047c2a Author: Alan Garny '' Date: Tue Dec 11 16:22:10 2018 +1300 Slight update to our supported platforms page. commit 7e97ea4e8f5abb6975b570f6483f2786c1b36f08 Merge: 976154d43 0f58ed140 Author: Alan Garny '' Date: Tue Dec 11 15:28:37 2018 +1300 Released OpenCOR 0.6 '(closes' '#1906).' commit 0f58ed14048cb1a5a472722d66644a759eca0fc2 Author: Alan Garny '' Date: Tue Dec 11 13:36:09 2018 +1300 Slight update to our downloads pages '(#1906).' commit 554846978a7f57fa3b55a99c6cb39ae94095afb1 Author: Alan Garny '' Date: Tue Dec 11 13:35:23 2018 +1300 Slight update to our what is new page '(#1906).' commit e03616c0eb73df611490f444ecab7779eca5b5ad Author: Alan Garny '' Date: Tue Dec 11 13:25:06 2018 +1300 Build version 0.6 of OpenCOR '(#1906).' commit bfd89acb874faf36b61196ab098c55723ba0ed14 Author: David Brooks '' Date: Thu Dec 6 20:04:13 2018 +1300 Python: add comment to help debugging. commit 88712169a0fdc31adf8110e58a9814218f1c1a2f Author: David Brooks '' Date: Thu Dec 6 20:03:43 2018 +1300 Python: tidy up C++ code. commit 6cf66f3de5b7935e4ed07a783c53eeb6829397ea Author: David Brooks '' Date: Thu Dec 6 20:02:29 2018 +1300 CMake now requires external project targets to be explicitly defined. commit 86e0fa7b65153ad1326c895aae0b95d714114da6 Author: David Brooks '' Date: Thu Dec 6 20:00:44 2018 +1300 Python: upgrade to latest versions of NumPy, lxml and Sphinx. commit 70dd21202d85f6955bfd2a400a1d29e2469bbc51 Author: David Brooks '' Date: Thu Dec 6 19:59:48 2018 +1300 Python: be consistent in specifying versions of packages. commit 4b30492ba553ac563beae3b9ea434e76037020b2 Author: David Brooks '' Date: Thu Dec 6 19:58:41 2018 +1300 Python: upgrade to latest versions of Jupyter, IPython and QtConsole packages. commit db7485e48647bb8c6b69153c2b7c5ecb9a9e0911 Author: David Brooks '' Date: Thu Dec 6 19:56:38 2018 +1300 Python: upgrade '`matplotlib`' to version 3.0.2. commit fc489a9cd23fd732e907beb7f01dc66a7c98a5a1 Author: David Brooks '' Date: Wed Dec 5 18:51:10 2018 +1300 Python: minor tidy-up. commit e7437f74c67bd2b2fafa220f62963527bed898c3 Author: David Brooks '' Date: Wed Dec 5 13:44:27 2018 +1300 Python: upgrade to latest versions of '`pip`' and '`setuptools`.' commit 5e3a865d0212ed943acf040871f172e6a31bbef9 Merge: 224209f72 976154d43 Author: Alan Garny '' Date: Tue Dec 4 21:18:19 2018 -0500 Merge branch ''\''master'\''' into issue1845. commit 976154d436ad682e75c61bb5ddd5346bafb54ced Merge: fe8938008 9e4430e6b Author: Alan Garny '' Date: Tue Dec 4 21:16:59 2018 -0500 Some minor cleaning up. commit 1d8ef89cbfbe01a850420266249b505e17c0fda0 Author: David Brooks '' Date: Wed Dec 5 13:43:20 2018 +1300 Python: bundle Jupyter Lab with OpwenCOR. commit 9e4430e6bffb52bc3329b2b8140dcaba2765cd66 Author: Alan Garny '' Date: Tue Dec 4 19:03:18 2018 -0500 Some minor cleaning up. commit 224209f72cbbcb9314c1acbe04d9950f61d2b045 Author: Alan Garny '' Date: Tue Dec 4 19:03:18 2018 -0500 Some minor cleaning up. commit 88d06d7a1f94f812f9716a39f26a109c64ab375f Author: Alan Garny '' Date: Tue Dec 4 18:01:46 2018 -0500 Some minor cleaning up. commit 007bdf61a3d03aa772830ae3e593517fd7448815 Author: Alan Garny '' Date: Tue Dec 4 17:39:34 2018 -0500 Some minor cleaning up. Indeed, our 2018-11-19 snapshot '(i.e.' OpenCOR 0.6 release 'candidate)' was using version 3, but we then modified the interface a bit '(in' preparation for issue '#1845),' so we had to bump the version. Yet, I somehow made a $'\342\200\234mistake\342\200\235' by bumping it to 5 rather than 4, so correcting this here. commit 223c57a156a08364d449be3118c8da338e6f3b08 Merge: 210d1b0bc fe8938008 Author: David Brooks '' Date: Tue Dec 4 22:19:38 2018 +1300 Merge branch ''\''master'\''' into pythonplugin commit fe8938008bfe62e7c94ee747380fbcdb36c2ebb8 Merge: 779e76586 f9e4c726c Author: Alan Garny '' Date: Mon Dec 3 23:43:58 2018 -0500 Slight update to our downloads page. commit 210d1b0bc87564f2416dfb33a0e74fbda840a604 Merge: d7d1c5c0c 0b6f1f11c Author: David Brooks '' Date: Tue Dec 4 15:54:45 2018 +1300 Merge branch ''\''master'\''' into pythonplugin ';' Conflicts: ';' src/plugins/datastoreinterface.cpp ';' src/plugins/datastoreinterface.h ';' src/plugins/miscellaneous/Core/src/corecliutils.h ';' src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewinformationparameterswidget.cpp ';' src/plugins/support/SimulationSupport/src/simulation.cpp ';' src/plugins/support/SimulationSupport/src/simulation.h commit f9e4c726c45e38f5178a382b9b68e23c6997728b Author: Alan Garny '' Date: Mon Dec 3 19:20:05 2018 -0500 Slight update to our downloads page. commit 77c9246cdee0832221295da61d87c7e0f6ac6602 Merge: 51c218710 779e76586 Author: Alan Garny '' Date: Mon Dec 3 17:07:05 2018 -0500 Merge branch ''\''master'\''' into issue1845. commit 779e7658668421ed3887e0839a5ca347eb10e48d Merge: 0b6f1f11c 4f8c7d9e1 Author: Alan Garny '' Date: Mon Dec 3 16:52:19 2018 -0500 Mesa: upgraded to version 18.2.6 '(closes' '#1901).' commit 4f8c7d9e10696a6fdc84db7b0ec35a28b8bbd651 Author: Alan Garny '' Date: Mon Dec 3 16:02:34 2018 -0500 'Don'\''t' only build the Mesa library '(#1901).' commit 8ca96f2e4ae00321060dd7f1a6ede6e6b66e862d Author: Alan Garny '' Date: Mon Dec 3 16:00:44 2018 -0500 Mesa package: binaries for version 12.8.6 '(#1901).' commit c510f9a4ef2e88ddf41fc544ca5c929baff0127b Author: Alan Garny '' Date: Mon Dec 3 14:58:35 2018 -0500 Only build the Mesa library '(#1901).' commit 36d86f4ce2d4bdc029c96aaf02aab6a3b4f97d53 Author: Alan Garny '' Date: Mon Dec 3 14:58:04 2018 -0500 Mesa: upgraded to version 18.2.6 '(#1901).' commit a1ee6a42d54f91a5ca574121ceb5cbe77d53f8c3 Author: Alan Garny '' Date: Mon Dec 3 14:57:40 2018 -0500 Some minor cleaning up. commit 4c8ab00d8f44c277469bbf078452a4c0bca5c7dc Author: Alan Garny '' Date: Mon Dec 3 14:57:18 2018 -0500 Only build the Mesa library '(#1901).' commit 51c218710c708417f5beb6f2e5bde1bce02aac42 Merge: 65d08df4a 0b6f1f11c Author: Alan Garny '' Date: Sat Dec 1 18:03:24 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 0b6f1f11c86b7e5ba9fbe3f1bd31367ed209bf2a Merge: 59bb42079 98bae3dd6 Author: Alan Garny '' Date: Sat Dec 1 18:02:25 2018 +1300 Some minor cleaning up and fixes. commit 65d08df4a042030b67fd63054337983c2456ccd5 Author: Alan Garny '' Date: Sat Dec 1 17:55:54 2018 +1300 Data Store interface: now includes imports, so bump up our version '(#1845).' commit c70dfe1ca2236a125c7e154a83173fefb99952bd Merge: 5da2285ac 98bae3dd6 Author: Alan Garny '' Date: Sat Dec 1 17:34:59 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 98bae3dd6721bc48f0e87070bc674bd258ee57f7 Author: Alan Garny '' Date: Sat Dec 1 17:32:54 2018 +1300 Graph Panel widget: ignore infinite/NaN values when computing our 'boundingRect()' and 'boundingLogRect()' methods. commit c9a93bbbdbe58e155ed763bfc15d9a0cc6efe88d Author: Alan Garny '' Date: Sat Dec 1 17:29:41 2018 +1300 Some minor cleaning up. commit 5da2285aca6cdbd0c3133cdd43eefe4757d4c1b7 Author: Alan Garny '' Date: Sat Dec 1 17:25:03 2018 +1300 Some minor cleaning up. commit 8c5841980bdde73fd63e69d4bbde295d604acfcc Merge: 6ddacfcc9 0766a8d3c Author: Alan Garny '' Date: Sat Dec 1 17:20:38 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 0766a8d3cadb2d6e37ed7593fc25e5c51b34d0e6 Author: Alan Garny '' Date: Sat Dec 1 17:18:04 2018 +1300 Some minor cleaning up. '#' Conflicts: '#' src/plugins/simulation/SimulationExperimentView/src/simulationexperiment viewinformationgraphpanelandgraphswidget.h commit 6ddacfcc94978e822c021fea19fa327e8c7bc346 Merge: 1ca904469 efa2f55ba Author: Alan Garny '' Date: Sat Dec 1 17:14:41 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit efa2f55ba8eb9cfb362652ab29ce2bf6c98123c4 Author: Alan Garny '' Date: Sat Dec 1 17:12:44 2018 +1300 Simulation Experiment view: ignore infinite/NaN values. commit 90e33705670100b71903a0d95841931d942655da Author: Alan Garny '' Date: Sat Dec 1 17:11:25 2018 +1300 Some minor cleaning up. commit 439673b446137ad2ccf8ff6cf16fd5f76d3c7ab3 Author: Alan Garny '' Date: Sat Dec 1 17:09:13 2018 +1300 Some minor cleaning up. commit 1ca90446980079d7696b9000b78db86f3bede605 Merge: d1539dab8 a80c89594 Author: Alan Garny '' Date: Sat Dec 1 17:03:11 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit a80c89594d053bc18a5f5f331139b3f4bfcb46a8 Author: Alan Garny '' Date: Sat Dec 1 17:00:10 2018 +1300 Some minor cleaning up. commit d1539dab878b3c825d984512d236b9c30ac263a6 Merge: b4d7d0077 6bf4813f4 Author: Alan Garny '' Date: Sat Dec 1 16:49:17 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 6bf4813f465acc0827044eaa79f378a1a7b72e5b Author: Alan Garny '' Date: Sat Dec 1 16:39:59 2018 +1300 Data Store interface: renamed our DataStoreData class to DataStoreExportData. $'It\342\200\231s' in preparation of our support for data import. commit b4d7d0077771505497d0d62bdb3d4a34872ccdaa Author: Alan Garny '' Date: Sat Dec 1 16:02:53 2018 +1300 Simulation Experiment view: reset all our model parameters and clear our simulation results before importing some data '(#1845).' This is a temporary solution that prevents OpenCOR from crashing when importing some data and then deciding to plot some of it when there are already some runs. Indeed, the imported data 'hasn'\''t' been computed for those runs... commit bf5590ae3caa41b0ae9bbb14e515a0dc9ded75fa Author: Alan Garny '' Date: Sat Dec 1 15:34:13 2018 +1300 Some minor cleaning up. commit ed51a07dab515710e9abbedaa2c5ba59b5ebcbe2 Author: Alan Garny '' Date: Sat Dec 1 15:03:59 2018 +1300 Some minor cleaning up. commit a76f0292e7ae591e9b077900864dd53da46eb4b3 Author: Alan Garny '' Date: Sat Dec 1 14:28:07 2018 +1300 Simulation Experiment view: ignore infinite/NaN values. commit 6417aa9c2004792dd8caa5a8b028d5cbefdac677 Author: Alan Garny '' Date: Sat Dec 1 13:20:28 2018 +1300 Graph Panel widget: only rely on valid points for our 'boundingRect()' and 'boundingLogRect()' methods. commit 9d9b466b7fdce883e6fa2bf0f3329bcbdbf5021b Author: Alan Garny '' Date: Sat Dec 1 13:18:13 2018 +1300 Some minor cleaning up. commit aa9ef38e74a9e84a93645554ff0fd3488b193836 Author: Alan Garny '' Date: Fri Nov 30 18:28:18 2018 +1300 Simulation support: can now plot imported data over several runs '(#1845).' commit 577d165bbc8ed78f519bf4126a7787662c4d3278 Author: Alan Garny '' Date: Fri Nov 30 18:00:20 2018 +1300 Simulation Experiment view: 'don'\''t' export to SED-ML graphs that involve imported data '(#1845).' commit 05dd1139c51ae7db29973122c10b8cd8c42495bb Author: Alan Garny '' Date: Fri Nov 30 15:48:42 2018 +1300 Some minor cleaning up. commit 4a62894c32942b12b1fbefa310bea31608f7d4e0 Author: Alan Garny '' Date: Fri Nov 30 15:45:20 2018 +1300 Simulation Experiment view: make sure that our imports contents menu '(in' the Parameters 'section)' is reset when reloading a file '(#1845).' commit 4e766983a4b44d9a97e5c23f4fad2ca3cafdf041 Author: Alan Garny '' Date: Fri Nov 30 15:44:12 2018 +1300 Some minor cleaning up. commit e5fb314b78461fd74dd99a94d615eab8cb40ef1e Author: Alan Garny '' Date: Fri Nov 30 15:43:55 2018 +1300 Simulation support: support the resetting of a simulation when it comes to imported data '(#1845).' commit 4b2c427c7d6bb328e995a38e23e8c9b5c85f4e8a Author: Alan Garny '' Date: Fri Nov 30 14:24:31 2018 +1300 Some minor cleaning up. commit 2b6b69d4aa2955709c89ab6fcbf6538d649749c3 Author: Alan Garny '' Date: Fri Nov 30 14:20:41 2018 +1300 Simulation support: now compute our imported data before adding a point '(#1845).' Generate a quiet NaN if we are outside of the VoI range. commit 676fce1f032d62b7ad54bc991e17e4417b63e991 Author: Alan Garny '' Date: Fri Nov 30 14:07:39 2018 +1300 Some minor cleaning up. commit 799933565133f93ea2730f6ac9f0774ffa8b77e4 Author: Alan Garny '' Date: Fri Nov 30 12:28:11 2018 +1300 Simulation support: now compute our imported data before adding a point '(#1845).' commit f356d892c0f99fe37e7bf21f0e3375c1377159de Author: Alan Garny '' Date: Fri Nov 30 10:43:57 2018 +1300 Some minor cleaning up. commit acb72f95e5ea8b7f652a0c268e84666bdf31a268 Author: Alan Garny '' Date: Fri Nov 30 10:29:22 2018 +1300 Some minor cleaning up. commit cc0313ee8b89f527886288ef627e476456000cdc Author: Alan Garny '' Date: Thu Nov 29 18:32:59 2018 +1300 Simulation Experiment view: make sure that graphs depending on imported data can be updated '(#1845).' commit 59cc1d951053bb00784919a80aa7840664ad7ea3 Author: Alan Garny '' Date: Thu Nov 29 18:30:19 2018 +1300 Simulation support: added support for imported data to our simulation results class '(#1845).' commit 86b9123c797b10e0694ec4e861c8d7a858331c80 Author: Alan Garny '' Date: Thu Nov 29 18:22:55 2018 +1300 Some minor cleaning up. commit 9d3f5cc13c0456fc383fad0a10637979894340d2 Author: Alan Garny '' Date: Thu Nov 29 18:18:23 2018 +1300 Simulation Experiment view: have our Parameters section get updated with our imported data '(#1845).' commit ff4c43fd10d5793f538e08b7e157ca2be91bcdf8 Author: Alan Garny '' Date: Thu Nov 29 18:17:44 2018 +1300 Some minor cleaning up. commit 72479a9bc74de6a0c9674a44cdbd66674205db30 Author: Alan Garny '' Date: Thu Nov 29 17:15:22 2018 +1300 CellML support: added transparency to our Data icon '(#1845).' commit 65d9b8bf0451997aaba248622ec5567250cca5a2 Author: Alan Garny '' Date: Thu Nov 29 17:02:16 2018 +1300 Simulation Experiment view: make sure that our imported data have a hierarchy '(#1845).' commit b30b5d6fe7fd17697fccde08c46e5c9fcce4b695 Author: Alan Garny '' Date: Thu Nov 29 16:38:36 2018 +1300 Some minor cleaning up. commit 9532897d81bcb9684b30024d633fa9d801f88427 Author: Alan Garny '' Date: Thu Nov 29 16:28:57 2018 +1300 Simulation Experiment view: our Graphs section now properly refers our imported data '(#1845).' commit 66dde1775054fbb713a94c03430371739f8b1940 Author: Alan Garny '' Date: Thu Nov 29 16:25:59 2018 +1300 Some minor cleaning up. commit 4647b163e1e376513f139c60b42091d0768c5696 Author: Alan Garny '' Date: Thu Nov 29 16:08:16 2018 +1300 Simulation Experiment view: our Parameters section now properly refers our imported data '(#1845).' commit 34fd6be82e8635d967f85427f2717c503cee0f33 Author: Alan Garny '' Date: Thu Nov 29 15:45:50 2018 +1300 Some minor cleaning up. commit 479215a6636a7c197279db1bdaab5291902e02fa Author: Alan Garny '' Date: Thu Nov 29 15:45:19 2018 +1300 Simulation support: now track imported data '(#1845).' commit 0ef782361f708c92723a30eb8cd383eac7367e81 Author: Alan Garny '' Date: Thu Nov 29 14:01:19 2018 +1300 Some minor cleaning up. commit 5c1c133a03f9891c43d8845eb97d9cb1ccca84f5 Author: Alan Garny '' Date: Thu Nov 29 13:58:30 2018 +1300 Simulation support: have a pointer to a double for each of imported data '(#1845).' This is going to be useful for our corresponding CellML runtime parameter. commit 706f86aef8bab6290dc44dff5c412613e0f82ef2 Author: Alan Garny '' Date: Thu Nov 29 13:55:50 2018 +1300 Simulation support: have a pointer to a double for each of imported data '(#1845).' This is going to be useful for our corresponding CellML runtime parameter. commit 977f3b520d2fbdee9b67921c4419cee74fe5a787 Author: Alan Garny '' Date: Thu Nov 29 13:33:36 2018 +1300 Simulation Experiment view: added import data to the context menu of our Parameters section '(#1845).' commit bef71d20b31b25f738a8f7919331fccdb98a974a Merge: 480d0f265 59bb42079 Author: Alan Garny '' Date: Thu Nov 29 13:24:45 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 480d0f265b680161ffc98ef5806b594ee6de5a1b Author: Alan Garny '' Date: Thu Nov 29 13:24:00 2018 +1300 CellML support: moved our data icon here from our Simulation Experiment view '(#1845).' Indeed, we may, outside of our Simulation Experiment view, want to have a CellML simulation to handle imported data, e.g. to link a model parameter to an imported data. We must therefore account for that $'\342\200\234new\342\200\235' type of parameter. commit 59bb420790de5e01a5b848f8b1da15658a9bbaca Author: Alan Garny '' Date: Thu Nov 29 13:22:00 2018 +1300 Some minor cleaning up. commit 6174120619c2c1f9e5d9a3fbcebd28fcdaf34646 Author: Alan Garny '' Date: Thu Nov 29 11:50:58 2018 +1300 Simulation support: place holder for imported data '(#1845).' commit 66b8f3f5013566db6079f0761ff6f181bc2e2813 Author: Alan Garny '' Date: Thu Nov 29 10:55:21 2018 +1300 Some minor cleaning up. commit ce2bb89a5261c9838e60ed62d63ffcbc8be237da Author: Alan Garny '' Date: Thu Nov 29 09:34:20 2018 +1300 Some minor cleaning up. commit 18cc02ab32c6b23eb440e5a337e564bd7d0a522b Author: Alan Garny '' Date: Thu Nov 29 08:59:53 2018 +1300 Some minor cleaning up. commit 906302ecb05e3da028c53e72b0a436b5c3786722 Author: Alan Garny '' Date: Wed Nov 28 18:18:36 2018 +1300 Simulation Experiment view: added import data to the context menu of our Parameters section '(#1845).' commit f08a72e608199d6fb1aa0382537357d99faa4233 Author: Alan Garny '' Date: Wed Nov 28 18:17:48 2018 +1300 Simulation Experiment view: added a place holder for import data to our Graphs section '(#1845).' commit 1537a61321780efbe8bb8cecff2288025333899c Merge: 48219a073 503ca043f Author: Alan Garny '' Date: Wed Nov 28 18:16:22 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 503ca043f89c3edc424d4595d88836d64679c6c4 Merge: cf56aedde d2bb006ae Author: Alan Garny '' Date: Wed Nov 28 18:14:29 2018 +1300 Some minor cleaning up. commit 48219a0738c2d97117d6f8268670208c52018e8c Author: Alan Garny '' Date: Wed Nov 28 18:04:55 2018 +1300 Simulation Experiment view: missed some translations '(#1845).' commit d2bb006ae660e54dbc84762a64d3141405b9cc5f Author: Alan Garny '' Date: Wed Nov 28 17:59:59 2018 +1300 Some minor cleaning up. commit f9a5f8088ad1b85b7aa887ea9d5d68f8299bd305 Author: Alan Garny '' Date: Wed Nov 28 17:40:26 2018 +1300 Some minor cleaning up. commit b1bd0053562d63b1c1422f4be0adfc59f012d1d7 Merge: a42439175 cf56aedde Author: Alan Garny '' Date: Wed Nov 28 16:38:05 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit a42439175044d02fa214121e0aba5da8b609bb9f Author: Alan Garny '' Date: Wed Nov 28 16:37:15 2018 +1300 Simulation Experiment view: add imported data to our Parameters section '(#1845).' commit cf56aeddeccfdccd5e66cb3ec1cf5ac62c2f279a Author: Alan Garny '' Date: Wed Nov 28 16:35:53 2018 +1300 Some minor cleaning up. commit 9f7f108661c6d52b03d86de1b94c8cabc507e066 Author: Alan Garny '' Date: Wed Nov 28 15:56:57 2018 +1300 Simulation Experiment view: added a data icon '(#1845).' commit 9a8ead15928a5c1cbb38206fba79bcf8f27bdad4 Author: Alan Garny '' Date: Wed Nov 28 15:45:37 2018 +1300 CellML support: added a data icon '(#1845).' commit e4ef9965cb99b0a5ad661ca70302d41e16ede4b6 Author: Alan Garny '' Date: Wed Nov 28 14:25:54 2018 +1300 Some minor cleaning up. commit fa5e6a6d363974bf2f8c8a15c61783528f018d88 Author: Alan Garny '' Date: Wed Nov 28 14:12:09 2018 +1300 Simulation Experiment view: place holder for updating our Parameters section '(#1845).' commit da1b2663cae918fa4133f6973870bd494f6fa442 Author: Alan Garny '' Date: Wed Nov 28 14:11:20 2018 +1300 Some minor cleaning up. commit 709b1878dccfc2227cead699c1cc10fe9e2a8586 Merge: 139f987bd 59c7d081d Author: Alan Garny '' Date: Wed Nov 28 14:05:54 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 59c7d081d2cda0bc3f9d9d2eb883fd6e1ac45f5d Author: Alan Garny '' Date: Wed Nov 28 14:05:04 2018 +1300 Some minor cleaning up. commit 139f987bd590f567d91f2c92729e6d75edd590c5 Author: Alan Garny '' Date: Wed Nov 28 13:52:35 2018 +1300 Simulation Experiment view: delete the import data of all our imports only we are really done with them '(#1845).' commit a500a713f74f9604a2346bae6c059bff30777ca7 Author: Alan Garny '' Date: Wed Nov 28 13:51:44 2018 +1300 Simulation Experiment view: always keep track of all import error messages '(#1845).' This is so that we have a $'\342\200\234free\342\200\235' access to the import data for all our imports '(needed' later on to populate our Parameters 'section).' commit 134c616aa2e7292cad7c7703d98a661ae138fd2e Author: Alan Garny '' Date: Wed Nov 28 13:48:53 2018 +1300 CSV data store: slight change in the error message we generate when importing some data '(#1845).' commit 80e9a03ed46de31f967d9a4d029d35f53326b909 Author: Alan Garny '' Date: Wed Nov 28 13:20:11 2018 +1300 Some minor cleaning up. commit fd08c7132802d0f047b36f9ed455840867ad1b22 Author: Alan Garny '' Date: Wed Nov 28 13:17:12 2018 +1300 Simulation Experiment view: place holder for updating our Parameters section '(#1845).' commit 75c9e07ee720b0cd8bf5e4ea164e1310d594201f Author: Alan Garny '' Date: Wed Nov 28 12:47:16 2018 +1300 Simulation Experiment view: can now properly import several files '(#1845).' We also account for the fact that some files may not be data files or that some imports $'can\342\200\231t' be done because of the memory not being allocable. commit f2ba253ef17c64a616e0c36c315b32088ed60d5f Merge: cbe8a3e51 efd76e399 Author: Alan Garny '' Date: Wed Nov 28 12:38:35 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit efd76e39982bb3695bbd0b6e3847646f33c32a20 Merge: 2dc033b91 4c2027f8a Author: Alan Garny '' Date: Wed Nov 28 12:33:13 2018 +1300 Some minor cleaning up. commit 4c2027f8a3cee2c34adce953dc741c6a753359b6 Author: Alan Garny '' Date: Wed Nov 28 11:37:20 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. This is currently of no use to us, but it might come handy '(and' definitely will be when importing 'data;' see issue '#1845).' commit 8b3f069144c706deb40dce282cb41f4ce9fe6b4f Author: Alan Garny '' Date: Wed Nov 28 11:30:27 2018 +1300 Some minor cleaning up. commit cbe8a3e51ccc7cb5a76ab55e22d4ba6ed7917eb3 Merge: 561a77e2a 2dc033b91 Author: Alan Garny '' Date: Wed Nov 28 09:14:47 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 2dc033b918eeb795242dc2f22927dfbbbf536aef Author: Alan Garny '' Date: Wed Nov 28 09:13:52 2018 +1300 Some minor cleaning up. commit 561a77e2adf8e60cd401602ce27d5431189d38a0 Merge: 858e335a4 5cac9faf0 Author: Alan Garny '' Date: Wed Nov 28 08:53:33 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 5cac9faf03120586100bb4bef2d6ffa135bc1f3a Author: Alan Garny '' Date: Tue Nov 27 20:12:03 2018 +1300 Some minor cleaning up. commit 858e335a4e193b91a4970b0873560aaa9d6f5f93 Merge: 6e8b1b84a b9948cdaf Author: Alan Garny '' Date: Tue Nov 27 17:54:06 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit b9948cdafeb78cd0350a2f0bc46cd4c0796a81f4 Author: Alan Garny '' Date: Tue Nov 27 17:52:58 2018 +1300 Some minor cleaning up. commit 6e8b1b84a2fc5d7916c8f41ac8762859e40b8df5 Merge: e5475baa6 56085682e Author: Alan Garny '' Date: Tue Nov 27 17:47:58 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 56085682ea9d561a5e00c4ad480c28d7e4ffc992 Author: Alan Garny '' Date: Tue Nov 27 17:47:12 2018 +1300 Some minor cleaning up. commit e5475baa68fcd78177650ad451456a3b6e19f8ee Merge: 750047aac a7dca304e Author: Alan Garny '' Date: Tue Nov 27 16:11:05 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit a7dca304e28349a1c90460c364a7431674526006 Merge: 8ab1487c3 56495034f Author: Alan Garny '' Date: Tue Nov 27 16:10:17 2018 +1300 Some minor cleaning up. commit 56495034f94fbdfe6cee7cfcd9567ff1f4c36a9d Author: Alan Garny '' Date: Tue Nov 27 15:46:19 2018 +1300 Some minor cleaning up. commit 750047aac551de17924ca7107b4627f20f3d81d3 Author: Alan Garny '' Date: Tue Nov 27 14:07:53 2018 +1300 Simulation Experiment view: properly show the progress of the import of several files '(#1845).' commit 6f8952a706091b3afb770b9bac099e847b325307 Author: Alan Garny '' Date: Tue Nov 27 13:53:05 2018 +1300 Simulation Experiment view: only have one connection for data store importers '(#1845).' commit 5232ae8e28733300d7dc7b61df5756b67d183e6b Author: Alan Garny '' Date: Tue Nov 27 13:51:47 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. commit b26fa447bac459395daf4185e5d2e933f94712a9 Merge: 8e930a0f1 8ab1487c3 Author: Alan Garny '' Date: Tue Nov 27 13:00:35 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 8ab1487c35e741299c41eb0a81aabb233b2fd0b1 Merge: 11c7c5a92 4555b1150 Author: Alan Garny '' Date: Tue Nov 27 12:55:42 2018 +1300 Various minor improvements. commit 4555b1150a4abbc525425f1dbc231eb4c85cacc0 Author: Alan Garny '' Date: Tue Nov 27 12:04:57 2018 +1300 Simulation Experiment view: only have one connection for data store exporters. commit 3c6f7601c2818b1cf4d9a527b03c622a121b6eed Author: Alan Garny '' Date: Tue Nov 27 12:01:46 2018 +1300 Data store interface: allow for the URI of a data store to be empty. This will prove necessary for importing data '(see' issue '#1845)' and should, in fact, be allowed just in case. commit 424ef2e04e79d7ae1d4c360e072940241cb8f91c Author: Alan Garny '' Date: Tue Nov 27 11:59:33 2018 +1300 Data store interface: pass the pointer to our data store when emitting progress and done signals. This is currently of no use to us, but it might come handy '(and' definitely will be when importing 'data;' see issue '#1845).' commit 7afb3724a45aa5060ed2524199a005240da83dc5 Author: Alan Garny '' Date: Tue Nov 27 09:47:05 2018 +1300 Core plugin: added another version of our 'doNothing()' method. That version can indeed come handy when testing things where we need a fixed delay, for example. commit 8e930a0f131b377d966d1097d8b6ff21e40c81af Merge: c1b5564f0 11c7c5a92 Author: Alan Garny '' Date: Tue Nov 27 09:24:22 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit c1b5564f06d331fbe8149dba98c832f6286d8405 Author: Alan Garny '' Date: Tue Nov 27 09:22:04 2018 +1300 Simulation support: make sure that our imported data eventually get freed '(#1845).' commit 11c7c5a9279695584399aaa8eadcbb83070ce8dd Author: Alan Garny '' Date: Mon Nov 26 19:50:44 2018 +1300 Some minor cleaning up. commit 7eae841e2d3fd7321b2aef2b93d812367291fac1 Author: Alan Garny '' Date: Mon Nov 26 19:04:46 2018 +1300 CSV data store: can now import a CSV file to a data store '(#1845).' commit ca185e5fd72fc51919ef2ef8bd4b2ba33048f113 Merge: 820e90ec2 f321a5419 Author: Alan Garny '' Date: Mon Nov 26 18:26:32 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit f321a5419bd3fe2e626dd024e71990e2806a8bb2 Merge: c53a9866c d4390c868 Author: Alan Garny '' Date: Mon Nov 26 18:25:06 2018 +1300 Some minor cleaning up. commit d4390c868d9f2ef2a86a177151217b3c7de824e8 Author: Alan Garny '' Date: Mon Nov 26 17:54:23 2018 +1300 Some minor cleaning up. commit 820e90ec2deea7f3e20991e211444c7fac79a7e9 Merge: daf83cd89 c53a9866c Author: Alan Garny '' Date: Mon Nov 26 15:35:42 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit c53a9866c4ca0b41907ac603a1b80c10caaedae1 Author: Alan Garny '' Date: Mon Nov 26 15:34:22 2018 +1300 Some minor cleaning up. commit 6cb551a2c50039e7624f2840bcdd187f18669689 Author: Alan Garny '' Date: Mon Nov 26 15:33:30 2018 +1300 Some minor cleaning up. commit daf83cd89b0af4270794c07773e787dd1da8ebfc Author: Alan Garny '' Date: Mon Nov 26 14:08:46 2018 +1300 Simulation Experiment view: can now '"import"' some data '(#1845).' Everything is in place. Now, we just need to do the actual import. commit 626c2bf795ea0c491732fbc1fda1912993e6b506 Merge: 537eaf713 1b7d12497 Author: Alan Garny '' Date: Mon Nov 26 13:59:36 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 1b7d1249784929079ccc2be3fa7ab5141bb68515 Merge: b87d96b9d ecc6c6e59 Author: Alan Garny '' Date: Mon Nov 26 13:58:51 2018 +1300 Some minor cleaning up. commit 537eaf713007a4a883015e3f07f19268edef7308 Author: Alan Garny '' Date: Mon Nov 26 13:22:30 2018 +1300 Simulation support: added an instance of our new SimulationImportedData class to our Simulation class '(#1845).' commit f2d54a1cb82ce11d104fdb96c430b6fbd5063ea3 Author: Alan Garny '' Date: Mon Nov 26 13:20:41 2018 +1300 Data store interface: added support for the import of data '(#1845).' commit ecc6c6e59c15602f5008cc43d897b4b024e02202 Author: Alan Garny '' Date: Mon Nov 26 13:03:56 2018 +1300 Some minor cleaning up. commit 9d66081952b6d9d69162c0c72b31ee9d15b44406 Author: Alan Garny '' Date: Mon Nov 26 11:56:54 2018 +1300 Some minor cleaning up. commit e60eaaa7a0f3c1f05d8662c33c138f35618c201a Merge: 0278a3c9c b87d96b9d Author: Alan Garny '' Date: Mon Nov 26 11:29:59 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit b87d96b9dad4280e55b52e1d6d381fd9ef4e48f0 Author: Alan Garny '' Date: Mon Nov 26 11:28:52 2018 +1300 Some minor cleaning up. commit 0278a3c9cb009d8c83f65fcf33759617d49d4bf7 Merge: 3d2d55d5d 75c51db3e Author: Alan Garny '' Date: Mon Nov 26 10:45:05 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 75c51db3e9f6b9fa611ee52f19aaae0297d24492 Merge: 7c77ed232 5919dec23 Author: Alan Garny '' Date: Mon Nov 26 10:42:33 2018 +1300 Some minor cleaning up. commit 5919dec23f30fdc4d6d67e9117f0128684022352 Author: Alan Garny '' Date: Mon Nov 26 10:22:56 2018 +1300 Some minor cleaning up. commit 65ff0719082dabfa00be565af6c4d26cbf9c1b80 Author: Alan Garny '' Date: Mon Nov 26 10:18:28 2018 +1300 Some minor cleaning up. commit a8507895755b906a35a886d75df7b35aabb6f794 Author: Alan Garny '' Date: Mon Nov 26 10:16:45 2018 +1300 Simulation support: created a simple SimulationObject from which SimulationData and SimulationResults inherit. commit 3d2d55d5d8813410672fa71fc13af49a271e806b Merge: 72f65a526 7c77ed232 Author: Alan Garny '' Date: Fri Nov 23 19:42:35 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 7c77ed232c648288f9d98b0f752d20e9b0e81894 Merge: ec91ce0fb 838409f51 Author: Alan Garny '' Date: Fri Nov 23 19:41:57 2018 +1300 Simulation Experiment view: improved our delay feature. commit 838409f51bd48eb48300488db94a8141451fa7bc Author: Alan Garny '' Date: Fri Nov 23 19:16:46 2018 +1300 Some minor cleaning up. commit fe9bc700120d59d09c3fc1647919b374c2c56010 Author: Alan Garny '' Date: Fri Nov 23 19:05:01 2018 +1300 'doNothing():' make it slower and real time when it comes to its number of loops. We used to pass a value of '100*delay' to 'doNothing(),' but $'it\342\200\231s' better to slow 'doNothing()' itself and we now do so by slowing it down by 1,000, i.e. 10 times slower than it used to be '(to' account for faster 'computers).' Also, we now pass a pointer to 'doNothing()' so that it can adapt to real-time changes to our delay. commit 72b16012f98cb68985f346ae3479b0d940b2fc4b Author: Alan Garny '' Date: Fri Nov 23 19:02:08 2018 +1300 Reverted to a delay of 1,000,000. commit 83d929ba9ef880532973738a15b29412289730e3 Author: Alan Garny '' Date: Fri Nov 23 18:49:31 2018 +1300 'doNothing():' offers to exit our empty loop. commit 6431812c13a13a56c08255fe1bb5e1edba7ca14e Author: Alan Garny '' Date: Fri Nov 23 18:47:24 2018 +1300 Increased our delay value to 1,000,000,000 from 1,000,000. Indeed, computers are quite a bit faster nowadays, $'so\342\200\246' commit 37f553d6cb525e3396b47c2b266c7b572c4593d1 Author: Alan Garny '' Date: Fri Nov 23 18:44:59 2018 +1300 Increased our delay value to 1,000,000,000 from 1,000,000. Indeed, computers are quite a bit faster nowadays, $'so\342\200\246' commit 72f65a526e6cde1e882442636b44c074edf2c751 Merge: fd718c870 ec91ce0fb Author: Alan Garny '' Date: Fri Nov 23 16:29:31 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit ec91ce0fbc11962802fd50c2d0e699a1d79dd8ae Merge: 569225d3b f1ae1a581 Author: Alan Garny '' Date: Fri Nov 23 16:28:42 2018 +1300 Improved our threaded code. commit f1ae1a581f0497e758d6841951c1e30f4f5d8d49 Author: Alan Garny '' Date: Fri Nov 23 15:59:56 2018 +1300 Data store interface: make all of our classes inherit from QObject. We had to do it for our DataStoreData class '(so' we could 'deleteLater()' 'it),' so we may as well do it for our other classes, if anything to be consistent. commit 7025cce0ea3e03989d5248502705b26104a0fb1f Author: Alan Garny '' Date: Fri Nov 23 15:56:18 2018 +1300 Simulation Experiment view: free up our data store data once we are done with it. commit b754d76665908aa4c9992e5e65f6166921223cde Author: Alan Garny '' Date: Fri Nov 23 15:22:43 2018 +1300 Some minor cleaning up. commit 95a1768311b5d451ff1fa3b20777d9f084ff959d Author: Alan Garny '' Date: Fri Nov 23 15:22:21 2018 +1300 Simulation support: make proper use of threads. commit c293e657eb87d31afd1284a49b20e6e91a599b51 Author: Alan Garny '' Date: Fri Nov 23 15:13:24 2018 +1300 Some minor cleaning up. commit c53f02694f44321713a6a82c817d715cfb324d20 Author: Alan Garny '' Date: Fri Nov 23 15:10:53 2018 +1300 Some minor cleaning up. commit eae268d7cf0e2eb2a73053ec0e83e00b009cc232 Author: Alan Garny '' Date: Fri Nov 23 14:53:08 2018 +1300 Some minor cleaning up. commit e5acf3d1ed222eb35d13da54ff2d60ffd933904b Author: Alan Garny '' Date: Fri Nov 23 14:49:12 2018 +1300 Some minor cleaning up. commit 114d8f5675fb96430f5d19ff15f2c8ea309b54d5 Author: Alan Garny '' Date: Fri Nov 23 14:44:29 2018 +1300 Some minor cleaning up. commit 521fc2212d856dc75acdb5461e206ffb289742db Author: Alan Garny '' Date: Fri Nov 23 13:09:17 2018 +1300 Some minor cleaning up. commit 5526d6cfc7f9a890ccf0ed91e86e17cf6a8a413e Author: Alan Garny '' Date: Fri Nov 23 12:05:04 2018 +1300 Data store exporters: make proper use of threads. commit d28527d02786d3cd7749af33034bfc88e7f7b433 Author: Alan Garny '' Date: Fri Nov 23 11:03:15 2018 +1300 Some minor cleaning up. commit 1d88bbaebd8d7a2925b04fbbbbaa07e7c1e5dfc4 Author: Alan Garny '' Date: Fri Nov 23 10:42:11 2018 +1300 XslTransformer: make proper use of 'QObject::deleteLater().' commit 8db42808be905bf0dea9d3892a56a563e0cf2831 Author: Alan Garny '' Date: Thu Nov 22 18:35:27 2018 +1300 XslTransformer: make proper use of 'QObject::deleteLater().' commit 8aa8dcd8c2d875eeb8b12ba8c20d8cbbb27a1895 Author: Alan Garny '' Date: Thu Nov 22 18:28:50 2018 +1300 XslTransformer: make proper use of 'QObject::deleteLater().' commit 6598b26ded3490f4568efd813da9a3a697ca6762 Author: Alan Garny '' Date: Thu Nov 22 18:28:18 2018 +1300 XslTransformer: make proper use of 'QObject::deleteLater().' commit 0f17a0f5a5c0456f3345e33415b1617da610817c Author: Alan Garny '' Date: Thu Nov 22 18:14:03 2018 +1300 XslTransformer: make proper use of 'QThread::deleteLater().' commit fd718c870e70166271bd40fc2d29d7c74ff268c3 Author: Alan Garny '' Date: Thu Nov 22 16:12:50 2018 +1300 Simulation Experiment view: give our 'importDataFile()' method access to the right data store interface '(#1845).' commit ee7b05cb95d956e8ce70863bb14b6ebda3cb2be2 Author: Alan Garny '' Date: Thu Nov 22 15:58:38 2018 +1300 Simulation Experiment view: give our 'importDataFile()' method access to the right data store interface '(#1845).' commit a87e516667bc3ed3826f238f8a2330e1090d0d99 Author: Alan Garny '' Date: Thu Nov 22 15:27:25 2018 +1300 Simulation Experiment view: can now '"import"' a data file using the button '(#1845).' commit cfa60dc0012b785d6bca698c67ece1cf13b47c23 Merge: 17c59f471 569225d3b Author: Alan Garny '' Date: Thu Nov 22 15:12:54 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 569225d3b9c835e8e8ef69e24e4e1a24d7c419e9 Author: Alan Garny '' Date: Thu Nov 22 15:11:14 2018 +1300 Remove duplicate files from the list of files we want to open. commit 17c59f471089e0bbc38346157bfec7c7aa2caf77 Author: Alan Garny '' Date: Thu Nov 22 14:49:34 2018 +1300 Can now drag '&' drop a valid data store file '(#1845).' Only CSV files work for now since 'BioSignalMLDataStorePlugin::isFile()' has yet to be implemented. commit af32099c34deff3978e04f6347dcea3c27c3757a Merge: 58e328464 dc7778a0b Author: Alan Garny '' Date: Thu Nov 22 14:41:45 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit dc7778a0bef54404b9cacf83bc1d099d6000dc92 Merge: 1132497ed 4de4e2c18 Author: Alan Garny '' Date: Thu Nov 22 14:33:52 2018 +1300 Some minor cleaning up. commit 4de4e2c18be471805aaff7111011f752a33a4f56 Author: Alan Garny '' Date: Thu Nov 22 14:15:19 2018 +1300 Some minor cleaning up. commit 7ed5af0d8143ec0fb5f5599c611d330537725e69 Author: Alan Garny '' Date: Thu Nov 22 13:38:15 2018 +1300 Some minor cleaning up. commit 58e328464b9680c1b8bcf5d72474b2553d47220e Author: Alan Garny '' Date: Thu Nov 22 10:47:43 2018 +1300 Disinguish between plugins that support the file type interface and those that also support the data store interface '(#1845).' commit 1a05ce09ff7427bca5bbe3c44f84936c92ec8b5d Merge: e6a14b040 1132497ed Author: Alan Garny '' Date: Thu Nov 22 10:39:40 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 1132497ed3d256ee53703a3ef0d03d7e39355ff8 Author: Alan Garny '' Date: Thu Nov 22 10:37:58 2018 +1300 Some minor cleaning up. commit e6a14b040d5cc00708f61ea207e35de781ec59dd Merge: 7278ead4f ffde43891 Author: Alan Garny '' Date: Thu Nov 22 09:10:45 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit ffde43891147571e202374e39898e0734dfbad43 Merge: 3460b302c e7a6e9430 Author: Alan Garny '' Date: Thu Nov 22 09:08:39 2018 +1300 Some minor cleaning up. commit e7a6e9430b8f76d8203da1f36fc27b2d0923c660 Author: Alan Garny '' Date: Wed Nov 21 18:00:56 2018 +1300 Some minor cleaning up. commit ef7ad48a5b9f5b594461d6557bea3361f6452ce4 Author: Alan Garny '' Date: Wed Nov 21 17:40:06 2018 +1300 Some minor cleaning up. Indeed, by default, drag '&' drop is not enabled by default, so no point in disabling $'it\342\200\246' commit 7278ead4f0a60b793845cda4aace1df48b920f40 Merge: 90da948e0 3460b302c Author: Alan Garny '' Date: Wed Nov 21 17:27:40 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 3460b302c637e920482e3f0fd7cfec841b3dbcca Merge: 4b81bda83 0a86892b2 Author: Alan Garny '' Date: Wed Nov 21 17:26:31 2018 +1300 Some minor cleaning up. commit 0a86892b210cdfa80dcfdf08c61e5908d27c6793 Author: Alan Garny '' Date: Wed Nov 21 16:47:31 2018 +1300 Some minor cleaning up. commit 6cb4cd2f6c04347d7c0b3c340afee787098a531f Author: Alan Garny '' Date: Wed Nov 21 16:32:14 2018 +1300 Some minor cleaning up. commit 90da948e097a8a4e45819d3e2a5f9474038601e2 Author: Alan Garny '' Date: Wed Nov 21 14:32:24 2018 +1300 Make use of the information available in the file type interface of our CSV and BioSignalML data stores '(#1845).' commit 2299c3c5fe3ffb2bb2eea7300a6a7aa9f4ca08e1 Author: Alan Garny '' Date: Wed Nov 21 13:30:24 2018 +1300 Keep track of the file type interface of our CSV and BioSignalML data stores '(#1845).' commit 5297ee177f563cfbbb0ff9e20cccbde10a7c5532 Merge: 0586da731 4b81bda83 Author: Alan Garny '' Date: Wed Nov 21 13:09:20 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit 4b81bda837edb25bf942c8823d5d87cfc95ecf65 Merge: dd6a04ac0 7d606f16e Author: Alan Garny '' Date: Wed Nov 21 13:08:34 2018 +1300 Some minor cleaning up. commit 7d606f16ef0d0d08c89f43aa601b024c1c30b93d Author: Alan Garny '' Date: Wed Nov 21 12:14:29 2018 +1300 Some minor cleaning up. commit 22e8c9ccfa74ef4a8cbc98bf44993a48a5cacaed Author: Alan Garny '' Date: Wed Nov 21 11:43:22 2018 +1300 Some minor cleaning up. commit 765d9628ee6052b6f3618be407f458f74dcd1411 Author: Alan Garny '' Date: Wed Nov 21 11:30:18 2018 +1300 Some minor cleaning up. commit 0586da7316679a520dc44861c72fc28885ab64a5 Author: Alan Garny '' Date: Wed Nov 21 11:21:46 2018 +1300 Added the file type interface to our CSV and BioSignalML data store plugins '(#1845).' commit 6f156cf669224e49fd0908f26b4a37e43d5bb99b Merge: 5a315b642 dd6a04ac0 Author: Alan Garny '' Date: Wed Nov 21 10:12:04 2018 +1300 Merge branch ''\''master'\''' into issue1845. commit dd6a04ac0f35ce275e86acf957b334a10a40c97a Merge: 97346c191 c527b5591 Author: Alan Garny '' Date: Wed Nov 21 10:11:15 2018 +1300 OpenSSL: upgrade to version 1.0.2q '(closes' '#1883).' commit c527b5591224e78d6b82740f817aa02a34167125 Author: Alan Garny '' Date: Wed Nov 21 09:55:02 2018 +1300 'Don'\''t' only build our OpenSSL package '(#1883).' commit 021698d6f307a97a66d58c9abf2db7eec373f02e Author: Alan Garny '' Date: Wed Nov 21 09:54:25 2018 +1300 Slight updates to our downloads pages '(#1883).' commit 704a16d2392eecfc05fc27aa8c03318fdef8a520 Author: Alan Garny '' Date: Wed Nov 21 09:54:10 2018 +1300 OpenSSL package: binaries for version 1.0.2q '(#1883).' commit 6cfaa118163a00e058fd9a3cd84104ec863528f4 Author: Alan Garny '' Date: Wed Nov 21 09:27:22 2018 +1300 Only build our documentation if Python and Sphinx are available. commit d796389a69dfa67878e2bed9156b169ec7bb92af Author: Alan Garny '' Date: Wed Nov 21 09:13:09 2018 +1300 OpenSSL: upgraded to version 1.0.2q '(#1883).' commit 14939fdaefbd9389a26dab414407ae59c4b33bbb Author: Alan Garny '' Date: Wed Nov 21 09:12:50 2018 +1300 Only build our OpenSSL package '(#1883).' commit 5a315b642cea181feba0c073c8e670da324a898d Merge: 15c968b2c 97346c191 Author: Alan Garny '' Date: Tue Nov 20 19:05:00 2018 +1300 Merge branch ''\''master'\''' into issue1845 commit 97346c191589737904a5065c972e7f3f56f69e6e Merge: d7b3dfa30 712da78d8 Author: Alan Garny '' Date: Tue Nov 20 19:00:07 2018 +1300 Some minor cleaning up. commit 15c968b2cc490ceca2e6a7f2e96e1a71bc23976a Author: Alan Garny '' Date: Tue Nov 20 18:03:32 2018 +1300 Simulation Experiment view: added a data import button '(#1845).' commit 712da78d8014789513b47ae1e33035144c8491ea Author: Alan Garny '' Date: Tue Nov 20 17:53:23 2018 +1300 Some minor cleaning up. commit 9ff5e8e0d900781107f185a256599c4748553381 Author: Alan Garny '' Date: Tue Nov 20 17:32:19 2018 +1300 Some minor cleaning up. commit d7b3dfa300f43bf0e5c6640cbc3fd41638814091 Merge: 5bcd02763 efcddb163 Author: Alan Garny '' Date: Mon Nov 19 20:02:39 2018 +1300 New snapshot. commit efcddb163e683b006491f51928df5970e57d19cc Author: Alan Garny '' Date: Mon Nov 19 19:44:27 2018 +1300 New snapshot. commit 5bcd02763fa6b81c169e12c95c9193d53a252ddd Merge: 3f683c94a 26a950533 Author: Alan Garny '' Date: Mon Nov 19 19:41:35 2018 +1300 Slight improvement to our what is new page. commit 26a95053388f6f61c513bc192f83982f7c584441 Author: Alan Garny '' Date: Mon Nov 19 19:24:29 2018 +1300 Slight improvement to our what is new page. commit 3f683c94a4bd858b16b0ed4286300c51bdb7fb09 Merge: faf63f769 944e530e8 Author: Alan Garny '' Date: Mon Nov 19 17:27:16 2018 +1300 Various updates to our what is new page. commit 944e530e870629109ff0bcaa425d3d05ad7730a3 Author: Alan Garny '' Date: Mon Nov 19 16:27:15 2018 +1300 Various updates to our what is new page. commit faf63f769f97ab7faecde88f46ec63684ffb7d83 Merge: 53a6f61e9 6bbe7c377 Author: Alan Garny '' Date: Mon Nov 19 13:18:10 2018 +1300 Windows: OpenGL is needed at all times. commit 6bbe7c377af7bb8e9747dd20998a7e708630cab9 Author: Alan Garny '' Date: Mon Nov 19 11:56:06 2018 +1300 Windows: OpenGL is needed at all times. Indeed, even if we $'don\342\200\231t' need as such '(as' would be the case if we were to use 'Zinc),' it is still somehow 'needed…!?' commit 53a6f61e92361ef87dc98254caa489b1bb093e4c Merge: dae11f58d 68ef10465 Author: Alan Garny '' Date: Mon Nov 19 10:56:46 2018 +1300 Mesa library: simplified things a bit. commit 68ef1046550de6364c151962dcfb8612ebd0e15f Author: Alan Garny '' Date: Mon Nov 19 10:40:27 2018 +1300 Downloads page: mention the license for each version/snapshot of OpenCOR. commit ead6672f580fd62af1081f46b8b85aa0142f55fc Author: Alan Garny '' Date: Mon Nov 19 09:39:12 2018 +1300 Mesa library: simplified things a bit. commit dae11f58d6b133df7a63195f6e9bb7095ddd87bd Merge: 871f83a38 9e6067e55 Author: Alan Garny '' Date: Sun Nov 18 19:23:12 2018 +1300 Some minor cleaning up and updated Mesa to version 18.2.5 '(on' 'Linux).' commit 9e6067e550d18a49158e4d99a58115dc12554421 Author: Alan Garny '' Date: Sun Nov 18 18:50:38 2018 +1300 'Don'\''t' build Mesa anymore. commit 2a2cb8816bf16310ab9f925e9c91b9cf2640e975 Author: Alan Garny '' Date: Sun Nov 18 18:47:55 2018 +1300 Mesa 3D: binaries for version 18.2.5. commit 8a95a012c7eee9b9fb8f5b0bf37bf329117dfa7c Author: Alan Garny '' Date: Sun Nov 18 18:47:32 2018 +1300 Prerequisites for Mesa 3D. commit 928f00c33d4b82ffb8de807f13a264b1507ae57a Author: Alan Garny '' Date: Sun Nov 18 18:19:43 2018 +1300 Some minor cleaning up. commit 3afb815489e3226c86989e73db46eb06b4b5def8 Author: Alan Garny '' Date: Sat Nov 17 23:50:42 2018 +1300 Temporarily build the Mesa library. commit 3c1b2b86959dcdaccbc0af04f767a2d81cce6ff7 Author: Alan Garny '' Date: Fri Nov 16 20:03:50 2018 +1300 Some minor cleaning up. commit 91207b99cfbffa84b9db5aa86b680f52ac3fd130 Author: Alan Garny '' Date: Fri Nov 16 12:00:59 2018 +1300 Upgraded Mesa to version 18.2.5. commit b7d9cce96358de3faf22f2136a4cc3a18a8c83b9 Author: Alan Garny '' Date: Fri Nov 16 11:37:46 2018 +1300 Only have OpenGL support if really needed. commit f5829a9155be4ca460a64bee286eadef8418e0fe Author: Alan Garny '' Date: Fri Nov 16 11:34:26 2018 +1300 Some minor cleaning up. commit 8590b3011e328d3f6d1e99403cf8b2c6acebdd5e Author: Alan Garny '' Date: Fri Nov 16 10:36:38 2018 +1300 Only have OpenGL support if really needed. commit 3fe1a4db70c5ed59ca280e934572fd46e8d82766 Author: Alan Garny '' Date: Fri Nov 16 10:28:13 2018 +1300 Only have OpenGL support if really needed. commit 4119e418d26093654bc0f355166638065e303458 Author: Alan Garny '' Date: Fri Nov 16 10:20:39 2018 +1300 Some minor cleaning up. commit 8354369e2df10ba9262cead4fcbbd2d0a7d8cd27 Author: Alan Garny '' Date: Fri Nov 16 10:06:26 2018 +1300 Some minor cleaning up. commit db36f196e3dc81ceb9770b0fa0c283197473a296 Merge: 0cb8c853e 871f83a38 Author: Alan Garny '' Date: Thu Nov 15 16:15:19 2018 +1300 Merge branch ''\''master'\''' into issue1801. commit 871f83a38e11269d19cc7dbdbd1875e9b937ab79 Merge: 6f1d9d626 281cf023b Author: Alan Garny '' Date: Thu Nov 15 16:11:40 2018 +1300 Converted '(and' 'updated)' the documentation to reStructuredText '(closes' '#1544).' commit 281cf023b462d10868434e3371f19778e8e95248 Author: Alan Garny '' Date: Thu Nov 15 15:00:25 2018 +1300 Slight update to our downloads page '(#1544).' commit 101e61901e0292571f3069da45cddf22e64f9235 Merge: c043226cd 6f1d9d626 Author: Alan Garny '' Date: Wed Nov 14 11:44:22 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 6f1d9d6269cc9a1c352d5a04c9f044368606cdda Author: Alan Garny '' Date: Wed Nov 14 11:42:45 2018 +1300 Some minor cleaning up. commit c043226cdb9f1f2215e939410e24e5238a4a1c00 Merge: a4f0d20d7 4b788b4c2 Author: Alan Garny '' Date: Wed Nov 14 11:18:10 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 4b788b4c25b568f08aed9cb6627b915c9f585c2f Merge: 1130eec3a ebf2c1cc8 Author: Alan Garny '' Date: Wed Nov 14 11:17:30 2018 +1300 Some minor cleaning up. commit ebf2c1cc82a50966a157853c13bf5d9ba339cfff Author: Alan Garny '' Date: Wed Nov 14 10:56:59 2018 +1300 Slight updates to our test COMBINE archives. commit 21f5aa7b7351b45c487e10b52431de448d3b3b51 Author: Alan Garny '' Date: Wed Nov 14 10:55:33 2018 +1300 Slight updates to our test SED-ML files. commit a4f0d20d73e01d9a1f928aaa521fb4c21b655fd0 Merge: 83b0361dc 1130eec3a Author: Alan Garny '' Date: Tue Nov 13 15:28:23 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 1130eec3a46ab2540e7e981f0e826fb8ef66e897 Merge: 739d093e2 cf937ebc4 Author: Alan Garny '' Date: Tue Nov 13 15:27:34 2018 +1300 Some minor cleaning up and improvements. commit cf937ebc42f59ea7b3a23683adb78a72301a6003 Author: Alan Garny '' Date: Tue Nov 13 14:55:14 2018 +1300 PMR Workspaces window: try to Git push again if it previously failed. commit ff50166da3bc9015e58bb05d4e52f34603041c14 Author: Alan Garny '' Date: Tue Nov 13 14:19:40 2018 +1300 Some minor cleaning up. commit f129087f0c838acd4181d4161a75add3146123a7 Author: Alan Garny '' Date: Tue Nov 13 14:10:26 2018 +1300 PMR Workspaces window: make sure that we propagate up the status of a folder. commit 8b9c6dd94bb13e9fc16adaaccfc910a28c438340 Author: Alan Garny '' Date: Tue Nov 13 09:53:48 2018 +1300 Some minor cleaning up. commit 83b0361dcb00e734bc3e6548008f04e5572e0e82 Merge: b2662ef19 739d093e2 Author: Alan Garny '' Date: Mon Nov 12 17:48:29 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 739d093e2173108e0eb1734d30d6b8b9f76a90ef Merge: 881727c73 d4f05a056 Author: Alan Garny '' Date: Mon Nov 12 17:47:30 2018 +1300 General: properly keep track of the sizes of some splitters '(closes' '#1871).' commit d4f05a056c1e7961c24d29c9cbfe11fc51ba533d Author: Alan Garny '' Date: Mon Nov 12 17:31:31 2018 +1300 Slight update to our downloads page '(#1871).' commit b8b8809f0c80688600b9f0a3f950403408941772 Author: Alan Garny '' Date: Mon Nov 12 17:29:57 2018 +1300 General: properly keep track of the sizes of some splitters '(#1871).' commit a2314300f05b953e1ee437053576f4b5c0a16d52 Author: Alan Garny '' Date: Mon Nov 12 17:27:26 2018 +1300 Some minor cleaning up. commit b2662ef1932961fc612fb07fd385182497b3b520 Merge: 5276a438d 881727c73 Author: Alan Garny '' Date: Thu Nov 8 18:29:01 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 881727c730feb3c765103eabcbf779b658e22f6e Merge: c47feab21 3dba9231c Author: Alan Garny '' Date: Thu Nov 8 18:28:18 2018 +1300 Some minor improvement and fix. commit 3dba9231cbc2482afd7b7a20d9eceec01ef51a73 Author: Alan Garny '' Date: Thu Nov 8 18:09:30 2018 +1300 PMR Workspaces window: 'don'\''t' remove the iterator for an unknown 'workspace!' Indeed, this crashes OpenCOR, as experienced when I had a local copy of one of my workspaces and then got Tommy to delete all of my workspaces, then started OpenCOR $'and\342\200\246' 'BOOM!' commit 08c96886b7c31c2dd636d2e4e17b7e768caa7c83 Author: Alan Garny '' Date: Thu Nov 8 18:07:29 2018 +1300 PMR Workspaces window: make sure that the path of a new workspace is shown in a native way. commit 5276a438d7721428c6b1b7f043f102b6237e0482 Author: Alan Garny '' Date: Thu Nov 8 18:09:30 2018 +1300 PMR Workspaces window: 'don'\''t' remove the iterator for an unknown 'workspace!' Indeed, this crashes OpenCOR, as experienced when I had a local copy of one of my workspaces and then got Tommy to delete all of my workspaces, then started OpenCOR $'and\342\200\246' 'BOOM!' commit d4e083f4b591393afeb593f1a87746411013a158 Author: Alan Garny '' Date: Thu Nov 8 18:07:29 2018 +1300 PMR Workspaces window: make sure that the path of a new workspace is shown in a native way. commit 14cefbe2572d397f5fc6a2a325c46ec6eb37dfc3 Merge: 366450903 c47feab21 Author: Alan Garny '' Date: Thu Nov 8 17:23:11 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c47feab217d8053106e985f27ce067efbf0b2624 Merge: 01c384a2d bd67c3a29 Author: Alan Garny '' Date: Thu Nov 8 17:22:16 2018 +1300 Some minor cleaning up. commit bd67c3a295fbd14076c38ef5aa03ae688d7cf162 Author: Alan Garny '' Date: Thu Nov 8 16:34:16 2018 +1300 Some minor cleaning up. commit 3664509038f7b8dd901876cb2373d9b6037158ac Merge: ce1616cc9 01c384a2d Author: Alan Garny '' Date: Thu Nov 8 15:31:37 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 01c384a2d761a40bb3cb1d10061aef9036316e55 Merge: 2a8ab5f75 cb5aa5100 Author: Alan Garny '' Date: Thu Nov 8 15:30:26 2018 +1300 PMR support: cleaned things up with regards to Git status. commit cb5aa5100a0024ace4425f65b19470272e8bdab9 Author: Alan Garny '' Date: Thu Nov 8 14:59:34 2018 +1300 PMR support: clean things up with regards to Git status. commit ce1616cc9b37e548c0e3a3e945d70b2205bc4c5e Merge: db1136737 2a8ab5f75 Author: Alan Garny '' Date: Wed Nov 7 18:06:22 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 2a8ab5f75ae31a9d1b7ec0ca5c1db63952c32155 Merge: eea892466 c2759492a Author: Alan Garny '' Date: Wed Nov 7 18:05:36 2018 +1300 PMR-based windows: make sure they get populated when being shown after having changed instances of PMR '(closes' '#1865).' commit c2759492aea80b77cd881885a8878965ad0211a1 Author: Alan Garny '' Date: Wed Nov 7 17:49:38 2018 +1300 Slight update to our downloads page '(#1865).' commit d4b75b6ebe0dd8f561df81543674508af5e8466b Author: Alan Garny '' Date: Wed Nov 7 17:48:04 2018 +1300 PMR-based windows: make sure they get populated when being shown after having changed instances of PMR '(#1865).' commit db11367374d28dcc05f527a4ae3b16460d26f658 Merge: fa1073e2d eea892466 Author: Alan Garny '' Date: Tue Nov 6 17:10:03 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit eea892466c5a85d25180a79e43e6e99a7a051727 Merge: d212f02de 22af6cbda Author: Alan Garny '' Date: Tue Nov 6 17:07:24 2018 +1300 Some minor cleaning up. commit 22af6cbdac0c9e21a3eea30784711d8130bafff7 Author: Alan Garny '' Date: Tue Nov 6 16:49:12 2018 +1300 Some minor cleaning up. commit fa1073e2dfb826550bc5cf2eaf324e4544acef2a Merge: 2772f2976 d212f02de Author: Alan Garny '' Date: Tue Nov 6 16:19:13 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit d212f02dede8feb6030677ace66e6bbb2bfb467d Merge: c7dff4ae1 5c411e12e Author: Alan Garny '' Date: Tue Nov 6 16:18:09 2018 +1300 Merge pull request '#1863' from agarny/issue1862 PMR-based windows: make sure that the spinning wheel is hidden when changing instances of PMR '(closes' '#1862).' commit 5c411e12e551c0cf5747b597999cbd2460ccdc8d Author: Alan Garny '' Date: Tue Nov 6 16:00:03 2018 +1300 PMR support: added a clickable link to the cellml-discussion mailing list. commit 3ba446313149c013c500ad082aa232ef9438a7e3 Author: Alan Garny '' Date: Tue Nov 6 15:37:10 2018 +1300 Slight update to our downloads page '(#1862).' commit 1e9ab20a4edcab7e0c7bc840ae7cc6c838f71bef Author: Alan Garny '' Date: Tue Nov 6 15:32:31 2018 +1300 PMR window: hide the spinning wheel upon changing instances of PMR '(#1862).' commit 2772f2976a8f43d530e91f23d0735be31e260304 Merge: a95bc333e c7dff4ae1 Author: Alan Garny '' Date: Sun Nov 4 15:32:22 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c7dff4ae14f6706dea0a8dca193f756239b49495 Merge: c7f164a7f 0c5aed549 Author: Alan Garny '' Date: Sun Nov 4 15:31:16 2018 +1300 Graph Panel widget: 'don'\''t' skip the first data point '(closes' '#1860).' commit c7f164a7fc1e522d591def2ecb89cb1e58754fac Author: Alan Garny '' Date: Sun Nov 4 15:28:57 2018 +1300 Some minor cleaning up. commit 0c5aed549bc3ff4415769a23b165ec5cf83dffbb Author: Alan Garny '' Date: Sun Nov 4 15:14:07 2018 +1300 Slight update to our downloads pages '(#1860).' commit 340af627f42ee3bf1eb53e76beeca5686187d4a0 Author: Alan Garny '' Date: Sun Nov 4 15:12:15 2018 +1300 Graph Panel widget: 'don'\''t' skip the first data point '(#1860).' commit c5a9233b0125aa68c351db7e58eeb23f42d3a973 Author: Alan Garny '' Date: Sun Nov 4 15:09:38 2018 +1300 Some minor cleaning up. commit d7d1c5c0ccee05989786a245fb3663ed9705d941 Author: David Brooks '' Date: Fri Nov 2 17:47:29 2018 +1300 Python: recalculate '`computed' 'constants`' and '`variables`' when parameters are changed. commit 38435d4d7fa2217acb9646ba42cb95b0832f4df7 Author: David Brooks '' Date: Fri Nov 2 15:02:40 2018 +1300 Minor tweak to comment. commit 0961fb8bfb3a68228fbf71cd2603422d1b4c3bce Author: David Brooks '' Date: Fri Nov 2 15:02:21 2018 +1300 Fix issues resulting from merge. commit bdaa810b1cad3b5fbb2789692061a4685da9481f Merge: 0cdf8ec0d 4bbd2eea3 Author: David Brooks '' Date: Fri Nov 2 14:10:44 2018 +1300 Merge branch ''\''master'\''' into pythonplugin commit a95bc333eb0ceefe806107bab4e2f830410e3216 Merge: ed7b281c1 4bbd2eea3 Author: Alan Garny '' Date: Mon Oct 29 15:45:31 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 4bbd2eea3eefeb93ddffc8120edfec991e96a96e Merge: 9931cf2f4 78c2602e4 Author: Alan Garny '' Date: Mon Oct 29 15:44:46 2018 +1300 New snapshot. commit 78c2602e44032f7d319ab30a974964f4321d9efa Author: Alan Garny '' Date: Mon Oct 29 15:14:46 2018 +1300 New snapshot. commit 9931cf2f41a425a1cba196c9b33c9bc6436156db Merge: 7dc685b7c 8265f71e6 Author: Alan Garny '' Date: Mon Oct 29 15:11:45 2018 +1300 libgit2: upgraded to version 0.27.7 '(closes' '#1857).' commit 8265f71e6f91019b0a9507c23e8e317fd0b3739c Author: Alan Garny '' Date: Mon Oct 29 14:54:56 2018 +1300 'Don'\''t' only build our libgit2 package '(#1857).' commit e3602f3c3f3f8001c3bcfec16dc03242541e8cd6 Author: Alan Garny '' Date: Mon Oct 29 14:54:26 2018 +1300 Slight update to our downloads page '(#1857).' commit c7af3e0eab4c1c4461e6d574d9372e2a40730716 Author: Alan Garny '' Date: Mon Oct 29 14:54:10 2018 +1300 libgit2: binaries for version 0.27.7 '(#1857).' commit 3dbb499de4f5b70205609208ba38e8295c77931a Author: Alan Garny '' Date: Mon Oct 29 14:46:06 2018 +1300 libgit2: upgraded to version 0.27.7 '(#1857).' commit 0aa201caec164141675c3b4e8ce322973c93bafe Author: Alan Garny '' Date: Mon Oct 29 14:45:00 2018 +1300 Only build our libgit2 package '(#1857).' commit 7dc685b7c6295469a88419c52f432d6ad4aff08b Author: Alan Garny '' Date: Fri Oct 26 22:44:44 2018 +1300 Some minor cleaning up. commit ed7b281c1d8368abaadabdf17fad019e0a089df9 Merge: 7f0b85f0f e3a118509 Author: Alan Garny '' Date: Fri Oct 26 16:08:43 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit e3a11850923d4457637ac8f104cdf0c63e61513c Merge: b1ebcdefc f5e50b401 Author: Alan Garny '' Date: Fri Oct 26 16:06:38 2018 +1300 Graph Panel widget: prevent OpenCOR from potentially freezing when plotting invalid data '(closes' '#1853).' commit f5e50b40195ff520db7381ada7a085d3f7dc232a Author: Alan Garny '' Date: Fri Oct 26 15:49:54 2018 +1300 Slight update to our downloads page '(#1853).' commit 73a2ced9877db46674658ad30805e7a0ab443430 Author: Alan Garny '' Date: Fri Oct 26 15:47:17 2018 +1300 Graph Panel widget: ignore invalid data in 'GraphPanelPlotGraph::boundingRect()' and 'GraphPanelPlotGraph::boundingLogRect()' '(#1853).' commit 4920bc09bdec534ae23442437a3a95de874a32e3 Author: Alan Garny '' Date: Fri Oct 26 15:23:18 2018 +1300 Graph Panel widget: now only draw lines and symbols for valid data '(#1853).' commit 7b3060a4bfb82e520a9e6d64ea44148cc7172723 Author: Alan Garny '' Date: Fri Oct 26 13:52:46 2018 +1300 Graph Panel widget: default 'drawLines()/drawSymbols()' methods '(#1853).' commit b1ebcdefcd392cb218e7f0e67ac226e6b4987c1d Merge: 37d332e3a 9257e215c Author: Alan Garny '' Date: Fri Oct 26 11:05:55 2018 +1300 Qwt: cleaned up the repository. commit 9257e215c7ff7409e74f2cfc05279cc282a7c7c3 Author: Alan Garny '' Date: Fri Oct 26 10:48:22 2018 +1300 'Don'\''t' only build our Qwt package. commit c0a742b9a9da9b7e4a97294dd45bf1d9c0e94382 Author: Alan Garny '' Date: Fri Oct 26 10:47:54 2018 +1300 Qwt package: new binaries. commit 4280a340d981900aec6366b10486174a75f9a90b Author: Alan Garny '' Date: Fri Oct 26 10:34:36 2018 +1300 Only build our Qwt package. commit 7f0b85f0f1286ec1cd6c7d91fe4852dc3f23f27c Merge: 37fcc0f9d 37d332e3a Author: Alan Garny '' Date: Thu Oct 25 16:29:13 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 37d332e3a97ca5760efd993f0966f3e195646e47 Merge: 11c34801c fe5577fc7 Author: Alan Garny '' Date: Thu Oct 25 16:28:10 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens '(closes' '#1850).' commit fe5577fc72b8dda4ac37f31598e9ff643d18ad0d Author: Alan Garny '' Date: Thu Oct 25 15:52:19 2018 +1300 Slight update to our downloads page '(#1850).' commit a62892e20c90221c497dcfd589124336ce2ab098 Author: Alan Garny '' Date: Thu Oct 25 15:50:07 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens '(#1850).' commit 11a0416196fb1d15f82f5c731ad5c4fdef51a887 Author: Alan Garny '' Date: Thu Oct 25 15:48:10 2018 +1300 Scale standard icons that need to be used in a tab bar widget '(#1850).' commit 30ec98892437e8069999c7511e45a04123f53a9b Author: Alan Garny '' Date: Thu Oct 25 15:43:21 2018 +1300 Scale standard icons that need to be used in a tab bar widget '(#1850).' commit 15c625213bdc92550a3a2072bcf46cf8fa8671a7 Author: Alan Garny '' Date: Thu Oct 25 15:37:23 2018 +1300 Scale standard icons that need to be used in a tab bar widget '(#1850).' commit 48a687f3d5c4d9a7e6a4f62f2a184578aa6255d8 Author: Alan Garny '' Date: Thu Oct 25 14:23:09 2018 +1300 General: overlayed icons now have the same resolution as standard icons on HiDPI screens '(#1850).' commit 6d463bccea42166dd6424ee8984a80b31d212521 Author: Alan Garny '' Date: Thu Oct 25 14:03:48 2018 +1300 Standard icon: in the end, we 'don'\''t' want to scale it up to 48x48 pixels '(#1850).' Indeed, now that we have got issue '#1850' fixed '(see' forthcoming 'commits),' scaling up a standard icon results in a softened icon, making it look quite a bit different than the original standard icon. On macOS, at least. commit 6b7afb9c3c4d50740ec30033fb04c6d4f953c511 Author: Alan Garny '' Date: Thu Oct 25 13:56:38 2018 +1300 Some minor cleaning up. commit 37fcc0f9d7c4e036d06b7ba6076fae087c216f73 Merge: abe7a8f88 11c34801c Author: Alan Garny '' Date: Thu Oct 25 11:30:48 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 11c34801cf44a0c9e991f86837246f1cd9485684 Merge: c3f6b6a2e 56cdeb63d Author: Alan Garny '' Date: Thu Oct 25 11:29:45 2018 +1300 General: recognise macOS Mojave '(10.14)' '(closes' '#1851).' commit 56cdeb63df390f8ceec7d795b3c4299c63b359ff Author: Alan Garny '' Date: Thu Oct 25 11:05:42 2018 +1300 Slight update to our downloads page '(#1851).' commit 19ebde8c9d8c34937c69339c1e84101a8cc1acb4 Author: Alan Garny '' Date: Thu Oct 25 11:04:16 2018 +1300 General: recognise macOS Mojave '(10.14)' '(#1851).' commit 974f86b2e63d58b211a2cac5e008586690214ee1 Author: Alan Garny '' Date: Thu Oct 25 10:52:33 2018 +1300 Some minor cleaning up. commit abe7a8f887c0f6b1d3215d3594c782616723ffff Merge: 2a2c094a7 c3f6b6a2e Author: Alan Garny '' Date: Tue Oct 23 19:17:10 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c3f6b6a2e8b59ee68162ac29f2f8bb9130c076d7 Merge: 8863c776f 423a64f56 Author: Alan Garny '' Date: Tue Oct 23 19:16:02 2018 +1300 General: unmanage and '(re)manage' a new file that has been saved '(closes' '#1846).' commit 423a64f5624c959db48b1131bd0cee59d21f2b67 Author: Alan Garny '' Date: Tue Oct 23 18:58:11 2018 +1300 Slight update to our downloads page '(#1848).' commit 5bb3776a71f11be3915d59f4d0e170a383919870 Author: Alan Garny '' Date: Tue Oct 23 18:55:53 2018 +1300 File manager: unmanage and '(re)manage' a new file that has been saved '(#1846).' commit 463662c0942fce5cb566f7fceb889e521fc2299e Author: Alan Garny '' Date: Tue Oct 23 18:40:52 2018 +1300 Some minor cleaning up. commit 8863c776f63c22efeda75af49dc51424cdfbe202 Merge: c4876fc32 d697ed29e Author: Alan Garny '' Date: Tue Oct 23 10:58:36 2018 +1300 SUNDIALS: upgraded to version 3.2.1 '(closes' '#1847).' commit d697ed29e5f40392a2b605e4d08d9e594e781753 Author: Alan Garny '' Date: Tue Oct 23 09:11:10 2018 +1300 Slight update to our downloads page '(#1847).' commit 177d0c591cf5ec6e364c2eef65896ef7059aa3fa Author: Alan Garny '' Date: Tue Oct 23 09:09:30 2018 +1300 'Don'\''t' only build our SUNDIALS package '(#1847).' commit 9f77e504d6e0aa6989a86f8e47d9fdfc6e44d8ff Author: Alan Garny '' Date: Tue Oct 23 09:08:51 2018 +1300 SUNDIALS package: binaries for version 3.2.1 '(#1847).' commit f1e862453aaa8a0422ead63a7c577bb8d868d145 Author: Alan Garny '' Date: Tue Oct 23 08:58:13 2018 +1300 SUNDIALS package: upgraded to version 3.2.1 '(#1847).' commit da86a45cb391ff313491c96e563f8ea217a0815b Author: Alan Garny '' Date: Tue Oct 23 08:56:26 2018 +1300 Only build our SUNDIALS package '(#1847).' commit 2a2c094a74800f16216d6b6edf7d321d849796c1 Author: Alan Garny '' Date: Wed Oct 17 11:04:54 2018 +1300 Added some information about our requirements for generating screenshots for our documentation '(#1544).' commit 9da5db5f18bb2a8d38ca49556a3420dd7c444a3c Merge: aa29fd520 c4876fc32 Author: Alan Garny '' Date: Tue Oct 16 15:41:17 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c4876fc323fef4c55a31c32bf48d5bbcb2df4908 Merge: a6c5ca8bc b6a728212 Author: Alan Garny '' Date: Tue Oct 16 15:39:44 2018 +1300 Provide a method to return a scaled up version of a standard icon. commit b6a72821209f512cb388c75ba9e4186fdbbdfc61 Author: Alan Garny '' Date: Tue Oct 16 15:03:39 2018 +1300 Provide a method to return a scaled up version of a standard icon. The scaling is needed if we, for instance, need to create an overlay icon. Indeed, the resolution of the overlay is dependent on that of the ico commit aa29fd520f824b1522a1e284060e6ee90622f941 Merge: 51a78bd3d a6c5ca8bc Author: Alan Garny '' Date: Tue Oct 16 14:24:03 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit a6c5ca8bc425fe64cd582caa668a2079167933d6 Merge: 9ca036d90 ddd8dfc6f Author: Alan Garny '' Date: Tue Oct 16 14:23:03 2018 +1300 Some minor cleaning up. commit ddd8dfc6f0aa37ee2265e58773c4e456db68cf8a Author: Alan Garny '' Date: Tue Oct 16 13:51:22 2018 +1300 Some minor cleaning up. commit 51a78bd3d1856e5c6ad1bb0ed835658f0f9be0fa Merge: 40896d6ca 9ca036d90 Author: Alan Garny '' Date: Fri Oct 12 16:33:57 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 9ca036d907760179b6e4f96ef6633c4325f8d540 Merge: c8a178e09 0c2211640 Author: Alan Garny '' Date: Fri Oct 12 16:32:18 2018 +1300 Cleaning up. commit 40896d6cae9f3599c1c379cf028494ca16633959 Merge: 98568276a 0c2211640 Author: Alan Garny '' Date: Fri Oct 12 14:56:59 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 0c221164034094512f1a9b2936aee40b87ea24c8 Author: Alan Garny '' Date: Fri Oct 12 14:56:37 2018 +1300 Moved our test models from doc/developer/functionalTests/res to models/tests. commit 98568276a3c65e33464b39a870d79a5d4052a691 Merge: f1d05c504 9153d871b Author: Alan Garny '' Date: Fri Oct 12 14:52:54 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 9153d871b2d4c2d0104823d54bcbefdd00619eee Author: Alan Garny '' Date: Fri Oct 12 14:51:28 2018 +1300 Moved our test models from doc/developer/functionalTests/res to models/tests. commit f1d05c50448c0f0bad217fe3b1bbbbc77eaf6884 Merge: 26bdfb5c0 edf6d7891 Author: Alan Garny '' Date: Fri Oct 12 12:12:01 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit edf6d7891e5c60ce72c8419a83cbecc3975904ab Author: Alan Garny '' Date: Fri Oct 12 12:10:16 2018 +1300 Some minor cleaning up. commit 26bdfb5c08e8ee9b5e9c1bd9edac3e236821e5b6 Author: Alan Garny '' Date: Fri Oct 12 12:09:39 2018 +1300 Some minor cleaning up. commit 82180cfbbddd422d634f5da1002857402e1f8da6 Author: Alan Garny '' Date: Fri Oct 12 12:00:44 2018 +1300 Help window: make sure that we can directly see images. Indeed, right now, we can only see '"proper"' web pages, not images or anything else while we should be able to see anything that a Web browser supports. commit 8ce0193164c7bbf1cc994d3266d9675e17e859e9 Author: Alan Garny '' Date: Fri Oct 12 11:56:14 2018 +1300 Some minor cleaning up. commit 937b9d3ffef813ff6eaeee9cae22fd75cc37bab1 Author: Alan Garny '' Date: Fri Oct 12 11:55:55 2018 +1300 Some minor cleaning up. commit 3a8b3e69f7f2771067cbb38e3ad057aaf9eba9b9 Author: Alan Garny '' Date: Fri Oct 12 11:55:14 2018 +1300 Some minor cleaning up. commit be2a42011613fdb692a190ba0c0781d85dc1edac Author: Alan Garny '' Date: Fri Oct 12 11:39:10 2018 +1300 Some minor cleaning up. commit 3afe909ae00f564a1508faa4f073f80f9c539b19 Author: Alan Garny '' Date: Fri Oct 12 11:30:05 2018 +1300 Silent the output of our documentation generation. commit 74838cee3d0de429ab9c048334679f2b50a09df4 Author: Alan Garny '' Date: Fri Oct 12 11:25:11 2018 +1300 Some minor cleaning up. commit 20a7944b9d6ae94b9ca363b3061ba0afa2113b25 Author: Alan Garny '' Date: Fri Oct 12 11:01:54 2018 +1300 Some minor cleaning up. commit e7da264d73e824cf66d85b09d51a746e7d8999dd Author: Alan Garny '' Date: Fri Oct 12 11:01:32 2018 +1300 Some minor cleaning up. commit 2ace5a94d7e608522e30a449f16b21b74da89287 Merge: 12dffe157 c8a178e09 Author: Alan Garny '' Date: Thu Oct 11 19:02:55 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c8a178e09e1723a25ce7b08f25d217425b280cbc Merge: c5479f64f e09f6cc58 Author: Alan Garny '' Date: Thu Oct 11 19:01:50 2018 +1300 libgit2: upgraded to version 0.27.5 '(closes' '#1838).' commit e09f6cc585daa564e1d0229a83a19d367d784c48 Merge: f94173c3f cb3c2ab3f Author: Alan Garny '' Date: Thu Oct 11 18:44:31 2018 +1300 Merge branch ''\''master'\''' into issue1838. commit cb3c2ab3f184f7cb9a36447c2103c66e867eb635 Author: Alan Garny '' Date: Thu Oct 11 18:40:21 2018 +1300 Slight improvement to scripts/genericclean.bat. This is in case one of the files is read-only, which is the case with the MSVC DLLs. I used to manually make them writable, but this approach is better. commit f94173c3f966d0d2b8611d024d73356e047ed188 Author: Alan Garny '' Date: Thu Oct 11 18:33:07 2018 +1300 Stop building only our libgit2 package '(#1838).' commit ac736fc25ea205dd450c7621349cd99b14614899 Author: Alan Garny '' Date: Thu Oct 11 18:30:58 2018 +1300 Slight update to our download page '(#1838).' commit b76125d3fbdc894005b558210d762e9bc229f9c1 Author: Alan Garny '' Date: Thu Oct 11 18:30:36 2018 +1300 libgit2: binaries for version 0.27.5 '(#1838).' commit c093529d88a7d4891dd147028b5b704a8033ccff Author: Alan Garny '' Date: Thu Oct 11 18:22:10 2018 +1300 Only build our libgit2 package '(#1838).' commit ff02f1ff42398f393d01b2e93526b4575fef861d Author: Alan Garny '' Date: Thu Oct 11 17:05:05 2018 +1300 libgit2: upgraded to version 0.27.5 '(#1838).' commit eb279207a212c9ccfe5cd313472c2c497a2fba25 Author: Alan Garny '' Date: Thu Oct 11 17:03:02 2018 +1300 Only build our libgit2 package '(#1838).' commit 12dffe157e9dbed1508221f0c1ed0cdac31f472a Author: Alan Garny '' Date: Thu Oct 11 10:56:57 2018 +1300 Help window: make sure that our user documentation has been generated '(#1544).' commit c09522bf341d702164bca32b20053508d97cbc52 Author: Alan Garny '' Date: Wed Oct 10 17:56:31 2018 +1300 Some minor cleaning up. commit b5fa85a3bc90295a9ea6463ed9fb3ab8e25577ec Author: Alan Garny '' Date: Wed Oct 10 17:55:03 2018 +1300 Provide a bit of space between the bottom of a page and our copyright. commit 263b3667d43dfc9d73a854c1594c1a424b3eb7e8 Author: Alan Garny '' Date: Wed Oct 10 13:34:25 2018 +1300 Help window: make sure that our user documentation has been generated '(#1544).' commit 7cb0ee44be29625a42e5bd0e5f16ee37fae77e11 Author: Alan Garny '' Date: Wed Oct 10 11:36:54 2018 +1300 Documentation: make sure that we can use the OpenCOR version of Sphinx '(#1544).' commit e9accb0aceb31a4561ec1c9c59d169af59c053b4 Author: Alan Garny '' Date: Wed Oct 10 11:18:57 2018 +1300 Some minor cleaning up. commit cb958dc8ba23361d764c0ff52d6609898876e9e6 Author: Alan Garny '' Date: Wed Oct 10 09:17:50 2018 +1300 Pass our copy of Python to build the user/developer documentation '(#1544).' commit 72ea0f5fb7b4c049fa3f3c8045dc0635aa729afc Author: Alan Garny '' Date: Tue Oct 9 17:50:39 2018 +1300 Have our user and developer documentations use our '"old"' colours '(#1544).' commit c525c92919f411278c5bca7a23a059ba38621098 Author: Alan Garny '' Date: Tue Oct 9 17:12:41 2018 +1300 Have our user and developer documentations use our '"old"' colours '(#1544).' commit b2cc74b15455b148c71ab2ef71a848ad4c7a3391 Author: Alan Garny '' Date: Tue Oct 9 16:39:34 2018 +1300 Documentation: require a blue foreground colours for screenshots '(#1544).' Now that we use our $'\342\200\234old\342\200\235' colours for both the user and developer documentation, it is better to use a blue foreground colour for our screenshots. commit 7b02081d834e085de31ddba50306aeab6471f60e Author: Alan Garny '' Date: Tue Oct 9 16:32:58 2018 +1300 Have our user and developer documentations use our '"old"' colours '(#1544).' commit 77e11aaac2c484ae7040cdf85f832e75296b7ad3 Author: Alan Garny '' Date: Mon Oct 8 17:49:05 2018 +1300 No need for a white desktop background for our screenshots '(#1544).' commit e81f2ba470c09c6b9a14385b49b33a8af0225f77 Merge: c680ac506 c5479f64f Author: Alan Garny '' Date: Mon Oct 8 17:24:21 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit c5479f64fd585fd66c3818be4bd7215b7efa2a55 Merge: 935e647da 3674176e9 Author: Alan Garny '' Date: Mon Oct 8 17:23:30 2018 +1300 Main window: removed '`&`' from different menu items. commit 3674176e9a2966cc69ac07b36ad80f833c0f17a1 Author: Alan Garny '' Date: Mon Oct 8 17:01:29 2018 +1300 Main window: removed '`&`' from different menu items. Hopefully, they $'don\342\200\231t' get used. Indeed, the reason for removing those '`&`' is that it makes it much faster to create snapshots on Windows by pressing Alt+PrtScn. However, with '`&`' in our main menu items, it meant that the characters used as a shortcut '(i.e.' 'Alt+Char)' were underlined, which is not what we $'want\342\200\246' commit c680ac506ec1cf7c049884ac2db4b72440306f67 Author: Alan Garny '' Date: Mon Oct 8 14:18:26 2018 +1300 Added a requirement for the colour of title bars in our screenshots '(#1544).' commit 3a6d403618b819cc393fa7b98c887e40cd201ac0 Author: Alan Garny '' Date: Mon Oct 8 13:51:35 2018 +1300 Now require a 1920x1080 screen resolution for screenshots '(#1544).' commit 315a36407d782dd1692aa67dd382850bc2b8f0f8 Merge: c08fe0ec4 935e647da Author: Alan Garny '' Date: Thu Oct 4 16:30:35 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 935e647da7fed0a721c92d988d4432220d62e0f9 Merge: cc5b20622 7e3f67663 Author: Alan Garny '' Date: Thu Oct 4 16:14:09 2018 +1300 Merge pull request '#1836' from agarny/issue1835 Simulation Experiment view: now have two reset buttons rather than one with a drop-down menu '(closes' '#1835).' commit 7e3f6766361e25922959c5066e7dc9863fd61115 Author: Alan Garny '' Date: Thu Oct 4 15:51:49 2018 +1300 Slight update to our downloads page '(#1835).' commit 3f1413b60b6c998b2f0378f053c6c2c6d9530b78 Author: Alan Garny '' Date: Thu Oct 4 15:50:25 2018 +1300 Simulation Experiment view: now have two reset buttons rather than one with a drop-down menu '(#1835).' commit c08fe0ec4f1ef535b7de170aaa2f8117b4e89e50 Merge: f30a7cdfe cc5b20622 Author: Alan Garny '' Date: Thu Oct 4 09:35:36 2018 +1300 Merge branch ''\''master'\''' into issue1544 commit cc5b20622d53fd7aa23b79f403021de9c264c2a1 Merge: b3ab95621 5fc8553ac Author: Alan Garny '' Date: Thu Oct 4 09:34:46 2018 +1300 QScintilla: upgraded to version 2.10.8 '(closes' '#1833).' commit 5fc8553ac6805b1996ab63246f2a9cffd04ca0d4 Author: Alan Garny '' Date: Thu Oct 4 09:19:11 2018 +1300 Slight updates to our downloads pages '(#1833).' commit 5f9c8b079f893e08b48bbb37261e9fd78058581d Author: Alan Garny '' Date: Thu Oct 4 09:17:04 2018 +1300 Stop building only our QScintilla package '(#1833).' commit d63c12377fc8860e73abbf44269bda20bc46e8cb Author: Alan Garny '' Date: Thu Oct 4 09:16:38 2018 +1300 QSctintilla package: binaries for version 2.10.8 '(#1833).' commit e1ebaa039b388ff807f8e536a34254c8be857547 Author: Alan Garny '' Date: Thu Oct 4 09:08:26 2018 +1300 QScintilla package: upgraded to version 2.10.8 '(#1833).' commit ebef061bf2464cede1033e1799f8b3749a9cafe4 Author: Alan Garny '' Date: Thu Oct 4 09:06:50 2018 +1300 Only build our QScintilla package '(#1833).' commit 8389e32b8582ed43f038434088f357c3d0921fb0 Author: Alan Garny '' Date: Thu Oct 4 09:06:04 2018 +1300 QScintilla package: upgraded to version 2.10.8 '(#1833).' commit a8008af212154d683f4ccdf58cddbbfb040ed8cb Author: Alan Garny '' Date: Thu Oct 4 08:59:56 2018 +1300 Only build our QScintilla package '(#1833).' commit f30a7cdfefb2cd1db0dbd924b50e0e7144b69203 Merge: f664ce2c6 b3ab95621 Author: Alan Garny '' Date: Wed Oct 3 18:07:55 2018 +1300 Merge branch ''\''master'\''' into issue1544 commit b3ab956217c1997d2d59861c3a86bee7476a5cb0 Merge: 47aa6d13f 223be9e39 Author: Alan Garny '' Date: Wed Oct 3 18:01:46 2018 +1300 New snapshot. commit 223be9e391629b9167952a34fb33bcc5a248e0c9 Author: Alan Garny '' Date: Wed Oct 3 17:47:43 2018 +1300 New snapshot. commit 47aa6d13f10ba1c2527386600249390d16606dcb Merge: aed43b328 b916c9be7 Author: Alan Garny '' Date: Wed Oct 3 17:45:50 2018 +1300 Some minor cleaning up. commit b916c9be707effc562c2bd839d44d84f0d7587b9 Author: Alan Garny '' Date: Wed Oct 3 17:26:10 2018 +1300 PMR Workspaces window: make sure that our GUI is up to date. commit 0870d247f2d514dd1872462b6ee6d1b90d99b55c Author: Alan Garny '' Date: Wed Oct 3 17:14:08 2018 +1300 Some minor cleaning up. commit 9698c3af704e4a1e111f8f61f373d13d65a8e429 Author: Alan Garny '' Date: Wed Oct 3 17:07:52 2018 +1300 Some minor cleaning up. commit 951e314e3b1c653c56a7d2c4f9aaed2f7c4aa65f Author: Alan Garny '' Date: Wed Oct 3 16:59:39 2018 +1300 Some minor cleaning up. commit f664ce2c666721fe71626a670a989ce7140b58af Merge: 7acd1773d aed43b328 Author: Alan Garny '' Date: Wed Oct 3 12:03:29 2018 +1300 Merge branch ''\''master'\''' into issue1544 commit aed43b328229cfd7327302397905c355e05ccb67 Merge: 77a0f5321 c051f6fbb Author: Alan Garny '' Date: Wed Oct 3 12:02:44 2018 +1300 SUNDIALS: upgraded to version 3.2.0 '(closes' '#1829).' commit c051f6fbb557cd93977cf7037c809ecb0161cb70 Author: Alan Garny '' Date: Wed Oct 3 11:47:15 2018 +1300 Slight update to our downloads page '(#1829).' commit 7d2269c448cce46596dcae0e86e2c0a721c20a04 Author: Alan Garny '' Date: Wed Oct 3 11:45:35 2018 +1300 Stop building only our SUNDIALS package '(#1829).' commit 432cbeccec29be1b86bbf918171f20e64ab58648 Author: Alan Garny '' Date: Wed Oct 3 11:44:53 2018 +1300 SUNDIALS package: binaries for version 3.2.0 '(#1829).' commit 9973866c48d70e1ccf435ecc914d1bd61e848e62 Author: Alan Garny '' Date: Wed Oct 3 11:36:53 2018 +1300 SUNDIALS plugin: upgraded to version 3.2.0 '(#1829).' commit c5412af456b04720cd40809648f7f25544b8b389 Author: Alan Garny '' Date: Wed Oct 3 11:31:57 2018 +1300 Only build our SUNDIALS package '(#1829).' commit 7acd1773d3d68946376d9c15ed46968d23aaad26 Author: Alan Garny '' Date: Wed Oct 3 09:36:38 2018 +1300 Added support for KaTeX '(#1544).' For Sphinx to generate the correct HTML code, e.g. for ':math:`10^{-7}`' to be converted to '\(10^{-7}\)' we $'\342\200\234fool\342\200\235' Sphinx by asking it to use MathJax. commit e9c4e910e4a980bca86bc52915d6e7f1ddaa53bf Author: Alan Garny '' Date: Tue Oct 2 18:40:22 2018 +1300 Added support for KaTeX '(#1544).' commit 5c1bc836a05e2bc6949f61aa25b995e51c02ec93 Author: Alan Garny '' Date: Mon Oct 1 15:33:41 2018 +1300 General: can now build OpenCOR on macOS 10.14 '(Mojave)' '(closes' '#1828).' commit c49513b22480d08f9d99ab0f912b866cee32cd89 Merge: 7ffa28676 77a0f5321 Author: Alan Garny '' Date: Thu Sep 27 11:04:04 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 77a0f5321a959c73b36d0d41ffb1292b9f924224 Merge: 61f11d259 b8d5b13a0 Author: Alan Garny '' Date: Thu Sep 27 10:40:43 2018 +1200 Fixed a small problem with graph panels not always autoscaling properly '(closes' '#1824).' commit b8d5b13a01a31efadefcc6717b68e100ce623d73 Author: Alan Garny '' Date: Thu Sep 27 10:25:05 2018 +1200 Slight update to our downloads page '(#1824).' commit 8fd9dc45720daf85856ad05b3c555c929362bfdc Author: Alan Garny '' Date: Thu Sep 27 10:23:24 2018 +1200 Graph Panel widget: properly handle the effect of data on axes '(#1824).' commit d2788b627c158ddf4af38e2238607921589d1ac0 Author: Alan Garny '' Date: Wed Sep 26 18:39:57 2018 +1200 Some minor cleaning up. commit 819b2b5ce4b886355241ded69a7bc549ad432715 Author: Alan Garny '' Date: Wed Sep 26 17:45:48 2018 +1200 Some minor cleaning up. commit 6fd10f6d55159d07b498fb1ffc6f3663767a8197 Author: Alan Garny '' Date: Wed Sep 26 17:26:16 2018 +1200 Graph Panel widget: handle the case where we want to optimise a number that is already optimised. The case at hand was when we had a pMin value of -0.3 and a minorStep value of 0.05. You would expect the new value '(linear)' value of pMin still to be -0.3, but in our particular case it was -0.35 because 'qFloor(pMin/minorStep)' was giving us -7 rather than -6 as we would have expected. So, to go around this problem, we do a fuzzy null check of pMin/minorStep against its integer $'representation\342\200\246' commit 319750e43663303c549342ccbfda1bb50a626f40 Author: Alan Garny '' Date: Wed Sep 26 15:03:23 2018 +1200 Some minor cleaning up. commit 138fd2c3db3f17ea4a768b4929429a8e44aa0e79 Author: Alan Garny '' Date: Wed Sep 26 14:59:33 2018 +1200 Some minor cleaning up. commit 61f11d259a35590d90f4bec36948f2f43f10f87e Merge: 05bef2ff7 24d29503a Author: Alan Garny '' Date: Wed Sep 26 14:27:50 2018 +1200 PMR Workspaces window: slight update to some warning messages. commit 24d29503afd922cb8e6465d2a0ddebd03d2c1c85 Author: Alan Garny '' Date: Wed Sep 26 13:30:46 2018 +1200 PMR Workspaces window: slight update to some warning messages. commit 7ffa28676474e70c5b82bf55ff29df18eeaf8fba Merge: c5ead4bf9 05bef2ff7 Author: Alan Garny '' Date: Mon Sep 24 16:55:29 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 05bef2ff73d60e7f14b4c48d642e362f9a827610 Merge: d0d32f7a3 e30381484 Author: Alan Garny '' Date: Mon Sep 24 16:54:32 2018 +1200 Various minor fixes/improvements. commit e30381484c60b97d5ae945a0276823c179746b0e Author: Alan Garny '' Date: Mon Sep 24 16:40:02 2018 +1200 Simulation Experiment view: make sure that reloading a CellML file does indeed clear all graph panels. commit 21ed2a09d8c1910d9d76f3a53418104846985bcc Author: Alan Garny '' Date: Mon Sep 24 15:48:42 2018 +1200 Simulation Experiment view: can now enable/disable the resetting of states only. commit 6f6c2e43e7562402a6058cebcdc48db55a9b1c42 Author: Alan Garny '' Date: Mon Sep 24 15:36:27 2018 +1200 Some minor cleaning up. commit 5ebb392b54a3dd43155b36b7e6c9fcb8b3bdbfe1 Author: Alan Garny '' Date: Mon Sep 24 15:27:54 2018 +1200 Simulation Experiment view: 'don'\''t' do anything if a file has been modified. Until now, if a CellML file had been modified '(outside' of 'OpenCOR)' and we $'hadn\342\200\231t' reloaded it, then we enabled our Reset Model Parameters action while there is no need for this. This action should only ever be enabled based on a $'simulation\342\200\231s' state, not a $'file\342\200\231s' state. commit 10a9214befcb9850946bf66370cca68d33b5ec01 Author: Alan Garny '' Date: Mon Sep 24 15:11:59 2018 +1200 Simulation Experiment view: the resetting of model parameters is now more specific '(#1815).' We potentially need to call 'recomputeComputedConstantsAndVariables()' twice in case some of our constants have been modified. Indeed, 'recomputeComputedConstantsAndVariables()' will compute our computed constants, which are stored in mConstants, and which may depend on the value of some other constants in mConstants. commit d0d32f7a3e5523ccf1442d507b46cb5a99e51a81 Merge: ce83e71c5 4b677cca7 Author: Alan Garny '' Date: Mon Sep 24 13:19:11 2018 +1200 Graph Panel widget: use 2 as our default graph line width. commit 4b677cca7f88a3068a6fa933f5ab18556b9308c4 Author: Alan Garny '' Date: Mon Sep 24 11:57:44 2018 +1200 Graph Panel widget: use 2 as our default graph line width. We set it '(back)' to 1 in commit dddabb7 since a bigger width means that it will be more time consuming to draw and that we $'didn\342\200\231t' want to use a big width by default '(this' is particularly noticeable using the noble_model_1962 3.zip file in issue '#1806).' However, a width of 1 looks really thin while a width of 2 looks just right. Also, $'it\342\200\231s' not everyday that we run simulations with 1,000,000 data points, so I guess $'it\342\200\231s' fine to go with a default line width of 2. commit c5ead4bf94c323f5b0b3dc4d668bcfb182e78c47 Author: Alan Garny '' Date: Mon Sep 24 11:54:08 2018 +1200 Graph Panel widget: use 2 as our default graph line width. We set it '(back)' to 1 in commit dddabb7 since a bigger width means that it will be more time consuming to draw and that we $'didn\342\200\231t' want to use a big width by default '(this' is particularly noticeable using the noble_model_1962 3.zip file in issue '#1806).' However, a width of 1 looks really thin while a width of 2 looks just right. Also, $'it\342\200\231s' not everyday that we run simulations with 1,000,000 data points, so I guess $'it\342\200\231s' fine to go with a default line width of 2. commit 1311ce3cf919dc558f44711919501586a6e81b0a Merge: 3e55ede25 ce83e71c5 Author: Alan Garny '' Date: Mon Sep 24 11:42:37 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit ce83e71c59fd690c8e71110cd2c8ee184baffcfb Merge: 0fb6c790c fea48c9b1 Author: Alan Garny '' Date: Fri Sep 21 14:59:37 2018 +1200 Simulation Experiment view: made the resetting of model parameters more specific '(closes' '#1815).' commit fea48c9b1d28ff3e188b21fe4bdc81cbfb26fbb3 Author: Alan Garny '' Date: Fri Sep 21 11:49:17 2018 +1200 Slight update to our downloads page '(#1815).' commit ebf205bd699c6f709ccfa01a6955bd09546bcb05 Author: Alan Garny '' Date: Fri Sep 21 11:47:23 2018 +1200 Simulation Experiment view: the resetting of model parameters is now more specific '(#1815).' commit 568d31cf0ab56fad40bee17f8813fa3bfc2ba7ae Author: Alan Garny '' Date: Fri Sep 21 11:15:34 2018 +1200 Some minor cleaning up. commit 4ceb0185ef8bd9a56c9526028996b0a5cd40b8aa Author: Alan Garny '' Date: Fri Sep 21 10:19:10 2018 +1200 Simulation Experiment view: some work on making the resetting of model parameters more customisable '(#1815).' commit 0fb6c790c718f59009938473df6fd673ade627a3 Merge: 50be964b7 88cb024a2 Author: Alan Garny '' Date: Fri Sep 21 09:20:30 2018 +1200 LLVM+Clang: upgraded to version 7.0.0 '(closes' '#1814).' commit 88cb024a227f0bcd3a3d6e0fd8734ebf8e924da8 Author: Alan Garny '' Date: Fri Sep 21 09:04:10 2018 +1200 Slight update to our downloads page '(#1814).' commit c9a09a8e7fb1568db372539f7a6ed6e923ff6e41 Author: Alan Garny '' Date: Fri Sep 21 09:02:07 2018 +1200 Stop building only LLVM+Clang '(#1814).' commit c535e4c9d5667aaaf2006f99703e614e95e5b66e Author: Alan Garny '' Date: Fri Sep 21 09:01:25 2018 +1200 LLVM+Clang: Windows and Linux binaries for version 7.0.0 '(#1814).' commit 977e1a8bb12174d70fec3cdb15d369a7815a181b Merge: 5929aa54e 50be964b7 Author: Alan Garny '' Date: Thu Sep 20 18:42:42 2018 +1200 Merge branch ''\''master'\''' into issue1814. commit 50be964b75e12afd6db9d68fbd2c8d977cb77980 Merge: c8ab6bf47 d37f3644d Author: Alan Garny '' Date: Thu Sep 20 18:40:52 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression '(closes' '#1816).' commit d37f3644deef9aa5f8a2ff9a2253fed31c87cf7a Author: Alan Garny '' Date: Thu Sep 20 18:23:13 2018 +1200 Slight update to our downloads page '(#1816).' commit 068dbbcb7cc38c2e86b76b4266ca5319f6975883 Author: Alan Garny '' Date: Thu Sep 20 18:20:56 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression '(#1816).' commit 3432f031fa7eda0adf6d7fbd5c3ba8d37d68de53 Author: Alan Garny '' Date: Thu Sep 20 18:02:40 2018 +1200 Editor widget: properly highlight/replace text that was found using a regular expression '(#1816).' commit 7bb85ef097690ef566d9b7700dd4ebdfec3e7e49 Author: Alan Garny '' Date: Thu Sep 20 17:47:14 2018 +1200 Some minor cleaning up. commit 3c9d5826002d391043595c00ff4b8f407861a0ca Author: Alan Garny '' Date: Thu Sep 20 17:35:57 2018 +1200 Editor widget: 'don'\''t' have the current word selected when updating an editor from another one and when our find/replace widget is visible. commit 7da084c63f67b753814b123b26f7a6ce28c63d33 Author: Alan Garny '' Date: Thu Sep 20 17:34:19 2018 +1200 Editor widget: make sure we also update our search options when updating our find/replace widget from another one. commit 5929aa54ef965cb645cc0368683f8f7aed0b5752 Author: Alan Garny '' Date: Thu Sep 20 16:01:33 2018 +1200 LLVM+Clang: macOS binaries for version 7.0.0 '(#1814).' commit f52a3a2c82af8f5143260ce16ee9dc97ba42d370 Author: Alan Garny '' Date: Thu Sep 20 14:18:02 2018 +1200 LLVM+Clang: upgraded to version 7.0.0 '(#1814).' commit 88db2419f9728ffc5211e6807acdbfde37c61118 Author: Alan Garny '' Date: Thu Sep 20 14:17:40 2018 +1200 Only build LLVM+Clang '(#1814).' commit c8ab6bf478c574a4b1be46ed8539bbad13e48d96 Merge: 075087d15 6cf0a44c1 Author: Alan Garny '' Date: Thu Sep 20 13:26:40 2018 +1200 General: improved HiDPI support on Windows '(closes' '#1776).' commit 6cf0a44c1c8c2791500be4f498771d356dcdf512 Author: Alan Garny '' Date: Thu Sep 20 12:06:10 2018 +1200 Slight updates to our downloads pages '(#1776).' commit 670156755d417d4cfb87cf96bb14332fc455baae Author: Alan Garny '' Date: Thu Sep 20 12:03:12 2018 +1200 General: improved HiDPI support on Windows '(#1776).' commit 3e55ede25b83033d7314669ea9d46ea48cc857d1 Merge: cdc2d30ba 075087d15 Author: Alan Garny '' Date: Tue Sep 18 17:21:51 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 075087d15c964033b92ff7e89b3caaf615be5562 Merge: 71c7b63ad 1b646798a Author: Alan Garny '' Date: Tue Sep 18 17:20:41 2018 +1200 New snapshot. commit 1b646798a7364f08f4e2b39432e9916a6d2370d9 Author: Alan Garny '' Date: Tue Sep 18 16:59:11 2018 +1200 New snapshot. commit cdc2d30ba1d88e53d8c011ce3038b2e23d4901d4 Merge: 5e6ff671d 71c7b63ad Author: Alan Garny '' Date: Tue Sep 18 15:17:28 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 71c7b63adff689f21880afa8d85d09298f6c4b5f Merge: b4323794b 988bb65f5 Author: Alan Garny '' Date: Tue Sep 18 15:14:41 2018 +1200 General: 'don'\''t' force the use of 96 DPI anymore '(closes' '#1810).' commit 988bb65f58b94fc777a5d1a2a361e990ebf51e9c Author: Alan Garny '' Date: Tue Sep 18 14:59:02 2018 +1200 Slight update to our downloads page '(#1810).' commit 676e41bd437b0491bb5de498d6118241ab7643fb Author: Alan Garny '' Date: Tue Sep 18 14:18:30 2018 +1200 General: 'don'\''t' force the use of 96 DPI anymore '(#1810).' commit 5e6ff671d04e630c666096ea10661fdc99f575bf Merge: 19ad1ad27 b4323794b Author: Alan Garny '' Date: Mon Sep 17 18:00:40 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit b4323794b7b6856d465bdd18ddbe410acaf2b037 Merge: b22eb5dad 7597f031f Author: Alan Garny '' Date: Mon Sep 17 17:59:49 2018 +1200 Some minor cleaning up. commit 7597f031fa91ae74e021ad4f2bf478fa597f6867 Author: Alan Garny '' Date: Mon Sep 17 17:02:13 2018 +1200 Some minor cleaning up. commit 19ad1ad27892f41900c1e80d8414fbea27e74097 Merge: da5891e20 b22eb5dad Author: Alan Garny '' Date: Mon Sep 17 11:23:28 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit b22eb5dada90d109c7c718ecc73500f481dec9c7 Merge: 50e78b7e3 8046df6e3 Author: Alan Garny '' Date: Mon Sep 17 11:22:32 2018 +1200 Graph Panel widget: improved the plotting speed of simulation data '(closes' '#1806).' commit 8046df6e3527b6414fb809e3679a432f6ccc88f2 Author: Alan Garny '' Date: Mon Sep 17 11:06:08 2018 +1200 Graph Panel widget: optimise logarithmic axes '(#1806).' commit da5891e20315e133ac9f785f5d8c821f7258a15f Merge: 3a1745b73 50e78b7e3 Author: Alan Garny '' Date: Fri Sep 14 19:11:32 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 50e78b7e3581d2400e97ec283fa9c134ea5a4cb2 Merge: b2e116bf5 1981a5f07 Author: Alan Garny '' Date: Fri Sep 14 19:09:54 2018 +1200 Graph Panel widget: improved the plotting speed of simulation data '(closes' '#1806).' commit 1981a5f07c2f1b350f94a46a007b3ee64be940b9 Author: Alan Garny '' Date: Fri Sep 14 18:53:45 2018 +1200 Slight update to our downloads page '(#1806).' commit 9cfd29defd5e2e0c7163e64b057dbda3b9bc41a1 Author: Alan Garny '' Date: Fri Sep 14 18:46:42 2018 +1200 Simulation Experiment view: make sure that our preferences use the '"official"' default values '(#1806).' commit dddabb70bcdc533b3a220d3516edd795fc3a5d1f Author: Alan Garny '' Date: Fri Sep 14 18:45:38 2018 +1200 Graph Panel widget: use 1 as our default graph line width '(#1806).' Indeed, a bigger width means that it will be more time consuming to draw, so we $'don\342\200\231t' want to use a big width by $'default\342\200\246' commit 5b9503531bc80aacfc36944f80b6dd5dfbf3560d Author: Alan Garny '' Date: Fri Sep 14 18:08:11 2018 +1200 Graph Panel widget: put back the optimisation of the 'axes'\''' values so that they fall onto a factor of the 'axes'\''' minor step '(but' only if we are not dealing with a logarithmic 'axis)' '(#1806).' This is what was causing the graph panels to be very slow. commit 4e6576596cf5a5c012f13c9b914912d9c4bc611c Author: Alan Garny '' Date: Fri Sep 14 17:11:30 2018 +1200 Some minor cleaning up. commit d6243d43bcb1b29a1b5785660594b3f44b608f6f Author: Alan Garny '' Date: Fri Sep 14 16:50:42 2018 +1200 Graph Panel widget: 'don'\''t' need our alignment with neighbours to be done twice in a row when OpenCOR is visible '(#1806).' This was done as a result of issue '#1790,' but this is not needed anymore as a result of issue '#1794.' So, not only that, but it obviously also makes things a bit faster with regards to our current issue. commit 5a5a82fcb5eae4c73104554581b3bbffca0e67fb Author: Alan Garny '' Date: Fri Sep 14 16:17:50 2018 +1200 Graph Panel widget: improved the alignment of graph panels '(#1806).' commit 1c16f8f08d749c6dc0633bc12b83068f2564b17b Author: Alan Garny '' Date: Fri Sep 14 15:45:19 2018 +1200 Some minor cleaning up. commit cca5f13cc3c630ab4f355af2d0247919c9bcda63 Author: Alan Garny '' Date: Fri Sep 14 14:52:26 2018 +1200 Some minor cleaning up. commit 3a1745b73f8852dac414a356ff1d569f3ec237eb Merge: 483a233dc b2e116bf5 Author: Alan Garny '' Date: Fri Sep 14 09:33:49 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit b2e116bf5900adc143ab6a1e8b8729b7ad922533 Merge: f9b22d364 2fc8ff31c Author: Alan Garny '' Date: Fri Sep 14 09:32:51 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(closes' '#1804).' commit 2fc8ff31ca2a2004cd075161dd3e0abc3279684c Author: Alan Garny '' Date: Fri Sep 14 09:17:09 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit bbd1e9b79669ef6507bfcc3c7f06f59c0ea27a37 Author: Alan Garny '' Date: Thu Sep 13 19:13:34 2018 +1200 Some minor cleaning up. commit 69d572505df6c9588d6411039ea468fccfe538a8 Author: Alan Garny '' Date: Thu Sep 13 19:03:20 2018 +1200 For testing... commit aa8f8ca38fa45c6318da9dcbea9df1f9c20afb72 Author: Alan Garny '' Date: Thu Sep 13 18:59:45 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 998e9d6ce858727b3b473bfb900e3e2103bfeb59 Author: Alan Garny '' Date: Thu Sep 13 18:58:02 2018 +1200 For testing... commit 2f54375085e69544469fe689334109de61b185b4 Author: Alan Garny '' Date: Thu Sep 13 18:32:39 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 5d335b3ba08ed1c9a533ed3b7309c7a42c41ff29 Author: Alan Garny '' Date: Thu Sep 13 18:25:24 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 2ba632180a086937ac80b8b5fb7a68d806f27ad6 Author: Alan Garny '' Date: Thu Sep 13 18:11:36 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit d3734a2f0accd09371477d1d5588c339c16bcd24 Author: Alan Garny '' Date: Thu Sep 13 18:06:25 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 68e329e20f884abf1e54dfc7f29e1e172ef6e133 Author: Alan Garny '' Date: Thu Sep 13 18:03:56 2018 +1200 CMake: prevent long command lines on Windows. commit 4dddd346caa80725959cf47016aa28073b67e717 Author: Alan Garny '' Date: Thu Sep 13 17:28:40 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 89a4e79e95feb69a0e789b5be1f1101fda0529b9 Author: Alan Garny '' Date: Thu Sep 13 15:56:33 2018 +1200 Slight update to our downloads page '(#1804).' commit 30fcc994302615e032d000898218f8ecd7ffe9a6 Author: Alan Garny '' Date: Thu Sep 13 15:53:57 2018 +1200 Simulation Experiment view: provide more user-friendly simulation time information '(#1804).' commit 483a233dcdee1b90859934dfb12d645c89837e06 Merge: f6bf438ae f9b22d364 Author: Alan Garny '' Date: Thu Sep 13 11:09:54 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit f9b22d364f5712f6403610c9a0058c6f9522039d Merge: fb9da46fa c129f1918 Author: Alan Garny '' Date: Thu Sep 13 11:08:51 2018 +1200 General: only handle a URL when OpenCOR is visible and no modal dialog is active '(closes' '#1802).' commit c129f191834b08f741bd697b2d634058af5a8814 Author: Alan Garny '' Date: Thu Sep 13 10:17:05 2018 +1200 Slight update to our downloads page '(#1802).' commit 63c3c4fc2de88a4e521b83f32c6953faa0c7d63e Author: Alan Garny '' Date: Thu Sep 13 09:56:46 2018 +1200 URL scheme: only handle a URL when no modal dialog is active '(#1802).' commit a54f7c7c16ed0bf571668a994a254adec548fc3f Author: Alan Garny '' Date: Wed Sep 12 18:45:33 2018 +1200 URL scheme: only handle a URL when OpenCOR is visible '(#1802).' commit 7901971fe25f28e6652b5e4d45abae5fdd59fb2c Author: Alan Garny '' Date: Wed Sep 12 15:06:34 2018 +1200 Some minor cleaning up. No need to test that we have a window handle since we necessarily have 'one!' commit 11660f1bec05311e38f0bba7a2ab15b2bb3fdc31 Author: Alan Garny '' Date: Wed Sep 12 14:47:46 2018 +1200 Some minor cleaning up. No need to test that we have a pWindow since we always 'do!' commit 216a240f725b9d0f1ac70dea0409470e57511199 Author: Alan Garny '' Date: Wed Sep 12 14:35:44 2018 +1200 Some minor cleaning up. commit 0cb8c853e419eb76471bcdc0d2fd19fe91359d65 Author: Alan Garny '' Date: Wed Sep 12 12:39:33 2018 +1200 OpenSSL: 1.1.1 binaries for version 1.1.1 '(#1801).' commit 00b1daf54d73c559e4919f8442d7c44a83e87edb Author: Alan Garny '' Date: Wed Sep 12 12:38:49 2018 +1200 OpenSSL: make sure we can build version 1.1.1 on Windows '(#1801).' commit 08bc365f915fb85966e822a8d84aa180233cfa6e Author: Alan Garny '' Date: Wed Sep 12 11:24:37 2018 +1200 Getting ready to build libgit2 '(#1801).' commit 44d3cf588e19e3f67653208d250d905c0ce8f740 Author: Alan Garny '' Date: Wed Sep 12 10:38:43 2018 +1200 OpenSSL: 1.1.1 binaries for Linux and macOS '(#1801).' commit 5fb0194f0424a15ce3c4e1f60711471ff5f373cc Author: Alan Garny '' Date: Wed Sep 12 10:25:00 2018 +1200 OpenSSL: upgraded to version 1.1.1 '(#1801).' commit 83c4aaf09fb652a679ff756ff01ac1b2eb653a6c Author: Alan Garny '' Date: Wed Sep 12 10:23:47 2018 +1200 Only build OpenSSL '(#1801).' commit f6bf438ae596186a20e3fbd56ee3792d6c1d2740 Merge: 9b3aa2420 fb9da46fa Author: Alan Garny '' Date: Wed Sep 5 23:29:50 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit fb9da46fa119eda2b3f34c60cb5381a1af85d11c Merge: 04c38a258 ff2c65991 Author: Alan Garny '' Date: Wed Sep 5 23:28:45 2018 +0200 libgit2: upgraded to version 0.27.4 '(closes' '#1799).' commit ff2c65991bcb3327950d0203dd68e2bf0282d55b Author: Alan Garny '' Date: Wed Sep 5 23:07:48 2018 +0200 Slight updates to our downloads pages '(#1799).' commit 465c9bc01720b55542100fd96d5af2b1c902bcdf Author: Alan Garny '' Date: Wed Sep 5 23:07:25 2018 +0200 'Don'\''t' only build the libgit2 package '(#1799).' commit c1ecd082ac1fac031e6bfc6b0ed09ebd90878aeb Author: Alan Garny '' Date: Wed Sep 5 23:06:59 2018 +0200 libgit2: binaries for version 0.27.4 '(#1799).' commit 6b035838ad0a4d69b85f75ac3df491fd02379132 Author: Alan Garny '' Date: Wed Sep 5 22:56:34 2018 +0200 libgit2: upgraded to version 0.27.4 '(#1799).' commit 86e23c4b81deaf291ff6b8b80d6f88e7befe8c97 Author: Alan Garny '' Date: Wed Sep 5 22:56:04 2018 +0200 Only build the libgit2 package '(#1799).' commit 161fd383935404ec3c51d2fb904d4739771093d5 Author: Alan Garny '' Date: Wed Sep 5 18:06:51 2018 +0200 Oxygen library: upgraded to version 5.49.0. commit 9b3aa24200a2b97b3d90d2224ed22e8a17b37cc3 Merge: 896dbd855 04c38a258 Author: Alan Garny '' Date: Sat Sep 1 16:33:37 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 04c38a25814d7872a3e4836543c3c7a378da59e7 Merge: b1625b8d0 a161c4e96 Author: Alan Garny '' Date: Sat Sep 1 16:31:43 2018 +0200 Some minor cleaning up. commit a161c4e96dcd962ac0c17b67a1c805b3db28157c Author: Alan Garny '' Date: Sat Sep 1 16:13:31 2018 +0200 New snapshot. commit 93a236094140104ac08be3a9ce6c96407d7ee7f3 Author: Alan Garny '' Date: Sat Sep 1 16:03:19 2018 +0200 PMR Workspaces window: highlight local changes within a block of changes in the synchronisation dialog '(#1294).' commit 0116389861f89dd60c70c1211ee47edcd664ffa0 Author: Alan Garny '' Date: Sat Sep 1 15:38:54 2018 +0200 Some minor cleaning up. commit 1a9f1652c49251ee5884edc7c6af7b95cec485d5 Author: Alan Garny '' Date: Sat Sep 1 15:30:52 2018 +0200 Some minor cleaning up. commit 964257634261aaf1a6887ddd2d3c0510f0f94beb Author: Alan Garny '' Date: Sat Sep 1 15:11:57 2018 +0200 Some minor cleaning up. commit 896dbd8552789a0f52b5dfe143ea4e9f00e203b0 Merge: 29af71de2 b1625b8d0 Author: Alan Garny '' Date: Thu Aug 30 14:41:19 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit b1625b8d0a56ba17a79309b3405c9112cdcc6b47 Merge: 602e72762 9c23bcc7d Author: Alan Garny '' Date: Thu Aug 30 14:40:45 2018 +0200 New snapshot. commit 9c23bcc7d724fbe73613159a14a4bce43823f480 Author: Alan Garny '' Date: Thu Aug 30 14:24:23 2018 +0200 New snapshot. commit 602e7276273725d60aaaacbb0bc717bdcab32c0c Merge: 5d0eb8073 155301025 Author: Alan Garny '' Date: Thu Aug 30 14:21:07 2018 +0200 Simulation Experiment view: fixed an issue with reloading a SED-ML file / COMBINE archive not looking smooth on Windows and Linux '(closes' '#1793).' commit 155301025b8bea801aa5e916a5e61fdcb464d9f7 Author: Alan Garny '' Date: Thu Aug 30 14:02:46 2018 +0200 Slight update to our downloads page '(#1793).' commit 0ec9f0f54e4ffe06ed5be8656ca77e861a4a841f Author: Alan Garny '' Date: Thu Aug 30 13:57:44 2018 +0200 Simulation Experiment view: some work on making the reloading of a SED-ML file / COMBINE archive smoother on Windows and Linux '(#1793).' commit 45c2d416798659ec8c4d199ba5ea919bbc89f223 Author: Alan Garny '' Date: Thu Aug 30 13:17:08 2018 +0200 Simulation Experiment view: some work on making the reloading of a SED-ML file / COMBINE archive smoother on Windows and Linux '(#1793).' commit 5d0eb8073a5031855cfa33e55390cad3c4ca7b43 Merge: ff6bf1e2c e7e547255 Author: Alan Garny '' Date: Wed Aug 29 22:30:28 2018 +0200 Graph Panel widget: fixed an issue with some graph panels not getting aligned on resetting another graph panel '(closes' '#1794).' commit e7e54725527abc8ab4278df006bcf38ea99825b7 Author: Alan Garny '' Date: Wed Aug 29 22:12:04 2018 +0200 Slight update to our downloads page '(#1794).' commit 0177b2a17f5cbc4684408c3d1fb88081caa1345f Author: Alan Garny '' Date: Wed Aug 29 22:10:44 2018 +0200 Graph Panel widget: fixed an issue with some graph panels not getting aligned on resetting another graph panel '(#1794).' commit ff6bf1e2c96a7ccf64d01af77673284664034daf Merge: 27f8c3d2d 56c32cd60 Author: Alan Garny '' Date: Wed Aug 29 19:43:46 2018 +0200 Graph Panel widget: fixed an issue with some graph panels potentially aligning only after a short delay '(closes' '#1790).' commit 56c32cd603c642e6e92f6606719c0cfb3aefcef4 Author: Alan Garny '' Date: Wed Aug 29 18:48:44 2018 +0200 Slight update to our downloads page '(#1790).' commit d3a3bb947acf699e1b54f50410837ac9909c33b4 Author: Alan Garny '' Date: Wed Aug 29 18:47:12 2018 +0200 Graph Panel widget: fixed an issue with some graph panels potentially aligning only after a short delay '(#1790).' commit 27f8c3d2dfb46a4fc5ca0637c63e7040f51534e6 Merge: 8e191c791 659886b37 Author: Alan Garny '' Date: Wed Aug 29 16:48:35 2018 +0200 Some minor cleaning up. commit 659886b37f607d6e59255d29f0b418f5a3d74fe1 Author: Alan Garny '' Date: Wed Aug 29 12:17:35 2018 +0200 Some minor cleaning up. Indeed, 'QwtScaleDraw::getBorderDistHint()' always returns distances that are greater or equal to zero, so no need for checking them. commit 71450eb1c9d52625f82f562ae47a93dff7c4f452 Author: Alan Garny '' Date: Wed Aug 29 11:38:38 2018 +0200 Some minor cleaning up. Indeed, 'QwtScaleDraw::getBorderDistHint()' always returns distances that are greater or equal to zero, so no need for checking them. commit 26ddc6ce29b0ddb4e5bfb4c1da7f6b7ce372d6d3 Author: Alan Garny '' Date: Wed Aug 29 09:49:10 2018 +0200 Some minor cleaning up. commit 8e191c7913b38bac6cbfed792ae4abbf638bbe91 Merge: bf9639948 56a28c9eb Author: Alan Garny '' Date: Wed Aug 29 07:39:39 2018 +0200 Graph Panel widget: no need for the resize hack and issue '#1786.' commit 56a28c9ebe2118f960bf3ac6b91f3ac30acf6346 Author: Alan Garny '' Date: Tue Aug 28 18:18:22 2018 +0200 Graph Panel widget: no need for the resize hack and issue '#1786.' Indeed, issue '#1786' arose as a result of the default handling of 'GraphPanelPlotWidget::event()' being done through a call to 'QWidget::event()' while it should have been done through a call to 'QwtPlot::event().' So, now that we have fixed that call '(see' commit bf96399 and issue '#1783),' issue '#1786' is irrelevant. commit bf9639948d3f69cf98691ee4149f010f7cdf4516 Merge: cf81786f6 4c3fc4eeb Author: Alan Garny '' Date: Tue Aug 28 13:08:49 2018 +0200 Graph Panel widget: added support for pinch gestures '(#1783).' commit 4c3fc4eeb04f5f8104be28a4d8abce52271d7a38 Author: Alan Garny '' Date: Tue Aug 28 11:52:47 2018 +0200 Graph Panel widget: added support for pinch gestures '(#1783).' commit 29af71de2fc90dc85d6bebb84c627c5aace04ecb Merge: bc368dfed cf81786f6 Author: Alan Garny '' Date: Mon Aug 27 18:48:52 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit cf81786f69c85f7363b7c9796bccd364a2c2e358 Merge: ae0acbede d5891cd33 Author: Alan Garny '' Date: Mon Aug 27 18:47:51 2018 +0200 Simulation Experiment view: fixed an issue with the loading/reloading of a SED-ML file / COMBINE archive potentially resulting in some legends being hidden / of the wrong width '(closes' '#1786).' commit d5891cd335904ba47428904390e389784716ed00 Author: Alan Garny '' Date: Mon Aug 27 18:27:58 2018 +0200 Some minor cleaning up. commit 42eab3cf64c51df7177e904d3353bfe83d1d7719 Author: Alan Garny '' Date: Mon Aug 27 18:21:23 2018 +0200 Graph Panel widget: ensure that our legend is visible and of the right width '(#1786).' By temporarily disabling updates for a GraphPanelPlotWidget, we prevent some black rectangles '(of' the size of a 'GraphPanelPlotWidget?)' from flashing on Linux. commit cc0848dc183f9ff5c76647fea9864cc8f4e0e91e Author: Alan Garny '' Date: Mon Aug 27 17:34:28 2018 +0200 Slight update to our downloads page '(#1786).' commit c8737d1f3b5fcef1642c05b8960bd21588144084 Author: Alan Garny '' Date: Mon Aug 27 17:07:32 2018 +0200 Graph Panel widget: ensure that our legend is visible and of the right width '(#1786).' commit 8234e99f2ecfaee1ddbe1b735afb8d81f9fd2943 Author: Alan Garny '' Date: Mon Aug 27 15:33:09 2018 +0200 Some minor cleaning up. commit fec995f1126f389624dae550c5a421fce66e89c9 Author: Alan Garny '' Date: Mon Aug 27 15:27:44 2018 +0200 Some minor cleaning up. commit edc6be5d3e99bd151c15c811bec41e745d63d412 Author: Alan Garny '' Date: Mon Aug 27 09:56:20 2018 +0200 Graph Panel widget: make sure we call 'setAxes()' in our GraphPanelPlotWidget constructor '(#1786).' We used to do it, but then removed that call. However, that call updates our actions, so we better do it to be on the safe side. commit bc368dfeddc929feb6ed50de7e2f233eaa257534 Merge: e0b6655f4 ae0acbede Author: Alan Garny '' Date: Fri Aug 24 22:25:12 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit ae0acbede9902c3053f460790baa2dfc03d7030b Merge: d998d1822 5e468074e Author: Alan Garny '' Date: Fri Aug 24 22:08:14 2018 +0200 Some minor cleaning up commit 5e468074e9862c191784a175c4b7d3dbe7bb32d1 Author: Alan Garny '' Date: Fri Aug 24 21:53:30 2018 +0200 Some minor cleaning up. commit d2cee1b9bf1ce1574914b5754d0e32b7ccac325c Author: Alan Garny '' Date: Fri Aug 24 21:33:20 2018 +0200 Some minor cleaning up. commit d998d1822da64cd09cc3b2380ed32078298dfa16 Merge: bb08fafcf b4a166989 Author: Alan Garny '' Date: Fri Aug 24 21:31:50 2018 +0200 Graph Panel widget: added support for pinch gestures '(closes' '#1783).' commit b4a1669890f304638e73c0f0fd1e107e4f25e17b Author: Alan Garny '' Date: Fri Aug 24 21:18:44 2018 +0200 Slight update to our downloads page '(#1783).' commit 5245f617c54e4a5a1c7a1b86ab835bef9613ce5b Author: Alan Garny '' Date: Fri Aug 24 21:16:47 2018 +0200 Graph Panel widget: added support for pinch gestures '(#1783).' commit 07c7a9a4a58ab108c92e09fd6c1fae6cd2645dcb Author: Alan Garny '' Date: Fri Aug 24 20:58:19 2018 +0200 Some minor cleaning up. commit 3c52f54ebb4fd96a8c23bc8f35cd1f8f26ab21a1 Author: Alan Garny '' Date: Fri Aug 24 20:55:43 2018 +0200 Some minor cleaning up. commit 45edcc43b52840c27cf71c766cd7c63ad1d1ff36 Author: Alan Garny '' Date: Fri Aug 24 18:18:49 2018 +0200 Some minor cleaning up. commit bb08fafcfe8d14f0cbcc5e833a6fcc6136cdc3ac Merge: 23bae929e a89b59f2f Author: Alan Garny '' Date: Fri Aug 24 17:24:06 2018 +0200 Graph Panel widget: only reset axes when needed '(closes' '#1777).' commit a89b59f2f38bc868c547725ec53d6cf939d47732 Author: Alan Garny '' Date: Fri Aug 24 17:05:14 2018 +0200 Graph Panel widget: improved the alignment of graph panels '(#1777).' commit 504019ca500dfb92ee31c8e1c631136af3686077 Author: Alan Garny '' Date: Fri Aug 24 17:03:06 2018 +0200 Graph Panel widget: improved the alignment of graph panels '(#1777).' commit d8a8d205a4afa3619eac8b5264b9b46214998cf2 Author: Alan Garny '' Date: Fri Aug 24 16:51:56 2018 +0200 Some minor cleaning up. commit 9599e9467549a3a9757f26eb0c8e1f1ed93759b4 Author: Alan Garny '' Date: Fri Aug 24 16:17:35 2018 +0200 Graph Panel widget: properly set axes in 'GraphPanelPlotWidget::resetAxes()' '(#1777).' commit 60c0ff7de0b88c021a6c8f2ec94f9c5e1f0f4f16 Author: Alan Garny '' Date: Fri Aug 24 16:12:43 2018 +0200 Graph Panel widget: properly set axes for axes synchronisation '(#1777).' commit 95d73ec24174d1bdfc7a8d444b97eaed5e4d444c Author: Alan Garny '' Date: Fri Aug 24 15:56:37 2018 +0200 Graph Panel widget: improved our 'GraphPanelPlotWidget::realDataRect()' method '(#1777).' It now takes into account the default axes values, which is quite important if we want to show the user that we have changed the start/end time of a simulation when the VOI is used on one of the axes of a graph. commit 8ca13013fcd76d6d5576f4fd8d0fa3d4ec5e8862 Author: Alan Garny '' Date: Fri Aug 24 15:54:50 2018 +0200 Some minor cleaning up. commit c30a586df95b2a23a3fcd4194fad4414ba9888ff Author: Alan Garny '' Date: Fri Aug 24 15:09:15 2018 +0200 Graph Panel widget: removed the pForceAxesSetting parameter from 'SimulationExperimentViewSimulationWidget::updatePlot()' '(#1777).' Indeed, it $'wasn\342\200\231t' being used at all. commit 6e9d87d079f6147ddbf0172bba0ee2a9ebe14e64 Author: Alan Garny '' Date: Fri Aug 24 14:49:38 2018 +0200 Graph Panel widget: properly set axes for axes synchronisation '(#1777).' commit c7e491e9b0dbc296124572b283d4e404eadb87ae Author: Alan Garny '' Date: Fri Aug 24 14:27:14 2018 +0200 Graph Panel widget: properly set axes in 'GraphPanelPlotWidget::customAxes()' '(#1777).' commit 5d92f9b8748bf6baa4b4d0fdf4a4d216dba508e1 Author: Alan Garny '' Date: Fri Aug 24 14:18:51 2018 +0200 Graph Panel widget: properly set axes for zooming a region in 'GraphPanelPlotWidget::mouseMoveEvent()' '(#1777).' commit 588e3b689e09c65402840be07533b44d9cfbcef1 Author: Alan Garny '' Date: Fri Aug 24 14:13:14 2018 +0200 Graph Panel widget: properly set axes for panning in 'GraphPanelPlotWidget::mouseMoveEvent()' '(#1777).' commit 739d1d781fc315bc92d8179184efbf612bfe1a7b Author: Alan Garny '' Date: Fri Aug 24 14:11:13 2018 +0200 Graph Panel widget: properly set axes in 'GraphPanelPlotWidget::scaleAxes()' '(#1777).' commit 88854560deff149dfddeef0aeda5b14bb7392dd6 Author: Alan Garny '' Date: Fri Aug 24 14:04:23 2018 +0200 Graph Panel widget: properly set axes in 'GraphPanelPlotWidget::resetAxes()' '(#1777).' commit 5bbcbb03c74e973bdba11374a32d27da0eb8c754 Author: Alan Garny '' Date: Fri Aug 24 13:58:05 2018 +0200 Graph Panel widget: no need to set our axes in our GraphPanelPlotWidget constructor '(#1777).' Indeed, our axes are already fine and calling 'setAxes()' $'doesn\342\200\231t' make any difference. commit c5e347a168b220a1aae4b0ec2ba10ffa12fde121 Author: Alan Garny '' Date: Fri Aug 24 13:47:17 2018 +0200 Graph Panel widget: distinguish the forcing of axes setting and the synchronisation of X/Y axes. We merely added pSynchronizeXAxis and pSynchronizeYAxis to 'GraphPanelPlotWidget::setAxes().' Right now, we use false for pForceAxesSetting, pSynchronizeXAxis and pSynchronizeYAxis in our direct calls to 'GraphPanelPlotWidget::setAxes().' In other words, nothing works, we just have the parameters we will need for 'GraphPanelPlotWidget::setAxes().' commit ea81925ee0d8d3fdc54ed971adf7374ea3db9c7c Author: Alan Garny '' Date: Fri Aug 24 13:35:42 2018 +0200 Graph Panel widget: distinguish the forcing of axes setting and the synchronisation of X/Y axes. We merely added pSynchronizeXAxis and pSynchronizeYAxis to 'GraphPanelPlotWidget::setAxes().' Right now, we use false for pForceAxesSetting, pSynchronizeXAxis and pSynchronizeYAxis in our direct calls to 'GraphPanelPlotWidget::setAxes().' In other words, nothing works, we just have the parameters we will need for 'GraphPanelPlotWidget::setAxes().' commit e0b6655f4c47c3211c1541c273be40e1778e86d7 Merge: 29aaf3382 23bae929e Author: Alan Garny '' Date: Thu Aug 23 19:11:57 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 23bae929ed93dbbadaab6f7656044eb6ce71da12 Merge: e58a330fb 6d505a0db Author: Alan Garny '' Date: Thu Aug 23 19:10:48 2018 +0200 Graph Panel widget: only reset axes when needed '(closes' '#1777).' commit 6d505a0db34425a92c200d6468387c7c1d4db958 Merge: cc76425ca e58a330fb Author: Alan Garny '' Date: Thu Aug 23 18:56:34 2018 +0200 Merge branch ''\''master'\''' into issue1777. commit e58a330fb1d6db2f029be9ad515e9d83394a9241 Merge: e8234f405 7043e7673 Author: Alan Garny '' Date: Thu Aug 23 18:55:46 2018 +0200 Some minor cleaning up. commit cc76425cac29166f5148fa647f2067d47164a9b1 Author: Alan Garny '' Date: Thu Aug 23 18:44:16 2018 +0200 Slight update to our downloads page '(#1777).' commit c6c491d533f62f4ba34c4f1cc474833d7d06d6dc Author: Alan Garny '' Date: Thu Aug 23 18:40:01 2018 +0200 Graph Panel widget: only reset axes when needed '(#1777).' commit 7043e76735e52c77c396bcb16d770ba8955ebf4f Author: Alan Garny '' Date: Thu Aug 23 17:23:59 2018 +0200 Graph Panel widget: make sure that our axes 'don'\''t' auto-scale. commit f47f0b640befdf87bceff5d14bc608ca436edd20 Author: Alan Garny '' Date: Thu Aug 23 16:32:16 2018 +0200 Some minor cleaning up. commit 3d4927a6b4bd78a703f394d801a1d74fe2e402db Author: Alan Garny '' Date: Thu Aug 23 16:27:32 2018 +0200 Some minor cleaning up. commit 8a0f16ddacfb6ade1eb1e70ec95e7dc3c10ba3d4 Author: Alan Garny '' Date: Thu Aug 23 14:52:57 2018 +0200 Partially revert commit 9e64a28. Indeed, we still want to call 'updateFileReopenMenu()' here and there in case the user wants to reopen a recent file using the key shortcut rather than the menu. commit 29aaf33829c7219ab6fca412c6013cefa0d07c2e Merge: d6023738e e8234f405 Author: Alan Garny '' Date: Thu Aug 23 11:48:25 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit e8234f40509022f3471ff8487b3857a03d8451be Merge: 224b0a331 07bdf14a8 Author: Alan Garny '' Date: Thu Aug 23 11:44:40 2018 +0200 Removed all traces of the Analysis mode. commit 07bdf14a805b0cb5731c40a5fe04f5bfb9d655f5 Author: Alan Garny '' Date: Thu Aug 23 11:25:31 2018 +0200 Remove all traces of the Analysis mode. Since we have never used $'it\342\200\246' commit d6023738e2123d2e5e782aa6e678c4331a6c0d63 Merge: a3569a6d9 224b0a331 Author: Alan Garny '' Date: Wed Aug 22 23:43:05 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 224b0a331a099e2466f8c732dab869ce8a4dc14d Merge: 8f1c4ea99 83e902e4a Author: Alan Garny '' Date: Wed Aug 22 23:41:45 2018 +0200 Added support for HiDPI pixmaps. commit 83e902e4a5435ca901141d7cbbe65e8702d46079 Author: Alan Garny '' Date: Wed Aug 22 22:52:24 2018 +0200 Add support for HiDPI pixmaps. I $'don\342\200\231t' believe we currently use 'QIcon::pixmap(),' but it $'doesn\342\200\231t' harm adding support for HiDPI pixmaps. commit 8f1c4ea9920779c95f0a122246289090b2d736ce Merge: f5f9dc442 b34644d7c Author: Alan Garny '' Date: Wed Aug 22 22:13:24 2018 +0200 Some cleaning up. commit b34644d7c232e726145064fae30a8cc5810e0a6e Author: Alan Garny '' Date: Wed Aug 22 21:54:18 2018 +0200 Zinc widget/window: improved HiDPI support. commit 1f4ea23d30a20b3daaf55435e65a91e742210368 Author: Alan Garny '' Date: Wed Aug 22 21:44:57 2018 +0200 Splash screen: make sure that our logo is centrally aligned. commit 35834e750c9748fee8f1a4ce2f181ba7aaaa5c81 Author: Alan Garny '' Date: Wed Aug 22 21:43:44 2018 +0200 Windows: 'don'\''t' have the OpenCOR description as the name of the application in Task Manager. commit 92281aa027cf5c061d92644a38c7bb06327ef437 Author: Alan Garny '' Date: Wed Aug 22 21:42:44 2018 +0200 Some minor cleaning up. commit 53fc9009c7b731ca159e8d11353fbee7cae8e660 Author: Alan Garny '' Date: Wed Aug 22 12:19:10 2018 +0200 Some minor cleaning up. commit f5f9dc442da99dc651acf02862925bd20622126e Merge: d671f1a5d 0c99657f1 Author: Alan Garny '' Date: Wed Aug 22 09:44:40 2018 +0200 Simulation Experiment view: added some basic preferences for graph panels and graphs '(closes' '#1772).' commit 0c99657f1c809ed85e76e784574b6e77dea67124 Author: Alan Garny '' Date: Wed Aug 22 09:25:54 2018 +0200 Slight update to our downloads page '(#1772).' commit ca3c476b17083e339b8596e2ba9c0ec156d25935 Author: Alan Garny '' Date: Wed Aug 22 09:17:41 2018 +0200 Some minor cleaning up. commit c25a4146efa363df2ad183e7b610008fbeeea8bb Author: Alan Garny '' Date: Wed Aug 22 08:59:13 2018 +0200 Simulation Experiment view: added the legend of a graph panel as a preference '(#1772).' commit 4d6e2bd97132e3df99ab20dfa4129a094437afb4 Author: Alan Garny '' Date: Wed Aug 22 08:44:02 2018 +0200 Simulation Experiment view: added the fill colour of a 'graph'\''s' symbol as a preference '(#1772).' commit 6d33d821c3a506ea0e95963876b1bf34383388fd Author: Alan Garny '' Date: Wed Aug 22 08:37:11 2018 +0200 Simulation Experiment view: added the fill colour of a 'graph'\''s' symbol as a preference '(#1772).' commit 74b0bc103751153ae861030b877077f30751f417 Author: Alan Garny '' Date: Tue Aug 21 17:49:12 2018 +0200 Simulation Experiment view: make use of our preferences for a graph '(#1772).' commit 3a0ec0ff135d7bb7522d0153cb92c38713931360 Author: Alan Garny '' Date: Tue Aug 21 17:27:15 2018 +0200 Some minor cleaning up. commit f85c3628a354411046a942f635301a65f9484326 Author: Alan Garny '' Date: Tue Aug 21 17:19:15 2018 +0200 Some minor cleaning up. commit 3ba230b98ea1a9ab071281e831a22a4895856b07 Author: Alan Garny '' Date: Tue Aug 21 17:06:53 2018 +0200 Moved our formatted line/symbol style strings to our SED-ML support plugin '(#1772).' commit 2dc3dc681ec5caa38f9ce341b057e195026578f9 Author: Alan Garny '' Date: Tue Aug 21 15:30:31 2018 +0200 Simulation Experiment view: 'can'\''t' specify the default title of a graph panel / graph anymore '(#1772).' Indeed, a graph panel / graph is bound to be unique, so to have a default title for it $'doesn\342\200\231t' make sense. commit 4485a88649499663312e59aeee9eb9536d623bee Author: Alan Garny '' Date: Tue Aug 21 15:23:05 2018 +0200 Some minor cleaning up. commit 3544c2b736a2ff744c47c8e4633d0b3b795f1dae Author: Alan Garny '' Date: Tue Aug 21 15:00:20 2018 +0200 Some minor cleaning up. commit 9576661a228479f59aa16b98be6a1a21994c8632 Author: Alan Garny '' Date: Tue Aug 21 14:33:38 2018 +0200 Simulation Experiment view: keep track of which category is selected in our preferences dialog '(#1772).' commit db690e3661a29d2ae385c69d1bc8d5a81ba1a073 Author: Alan Garny '' Date: Tue Aug 21 14:32:59 2018 +0200 Simulation Experiment view: our preferences now support more graph-related default values '(#1772).' commit 3fb472120a125e36855559eebd695af669bf397c Author: Alan Garny '' Date: Tue Aug 21 14:15:29 2018 +0200 SED-ML support: added some convenience methods. commit 42f2918557bd1fa3f8d6110411005596cea1ed4f Author: Alan Garny '' Date: Tue Aug 21 14:14:40 2018 +0200 Some minor cleaning up. commit 2e60bec2a9abbc51780e91155f39c362c8b53f86 Author: Alan Garny '' Date: Tue Aug 21 13:23:29 2018 +0200 Some minor cleaning up. commit afcc3a69d99108923002d1977ac864931bdaf348 Author: Alan Garny '' Date: Tue Aug 21 13:02:33 2018 +0200 Some minor cleaning up. commit e29899717ff1aceda20167d13ac58cc6161fead9 Author: Alan Garny '' Date: Tue Aug 21 12:59:24 2018 +0200 Some minor cleaning up. commit bc74ae2f5401cd51e61ad0e40aad6302f3fe1ef8 Author: Alan Garny '' Date: Tue Aug 21 11:19:32 2018 +0200 SED-ML support: still need our original 'lineStyleValue()' and 'symbolStyleValue()' methods. Indeed, this is needed when retrieving the line/symbol style from a SED-ML file. Actually, not so much for the line style, but definitely a symbol style since a symbol style of $'\342\200\234none\342\200\235' has an integer value of -1 '(see' 'QwtSymbol::Style).' commit 5ad243da67af31299986ed4757c2ebcc8e9b7707 Author: Alan Garny '' Date: Tue Aug 21 10:38:49 2018 +0200 Some minor cleaning up. commit 35d11f17a3aaaa07beacf1c559ea82bf0c9d1d41 Author: Alan Garny '' Date: Tue Aug 21 10:38:20 2018 +0200 SED-ML support: changed the signature of our 'symbolStyleValue()' method. Indeed, we had various calls to 'symbolStyleValue()' that had to handle the case where we passed a value that is not recognised '(e.g.' 'QwtSymbol::UTriangle),' meaning duplication of code here and there. commit 9217d370f602f62f93f7b1f44a364375bac7f296 Author: Alan Garny '' Date: Tue Aug 21 10:29:32 2018 +0200 Some minor cleaning up. commit 2197dfde39ca975df64086e07eb2bf1e78cb296e Author: Alan Garny '' Date: Tue Aug 21 10:06:48 2018 +0200 SED-ML support: changed the signature of our 'lineStyleValue()' method. Indeed, we had various calls to 'lineStyleValue()' that had to handle the case where we passed a value that is greater than Qt::DashDotDotLine, meaning duplication of code here and there. commit 6ac6c1d47326a4bca18446396ae5d9319ed38025 Author: Alan Garny '' Date: Tue Aug 21 09:12:07 2018 +0200 Some minor cleaning up. commit 65f2483f0734b47de57596d020fcbb810a7aadef Author: Alan Garny '' Date: Tue Aug 21 09:06:41 2018 +0200 Some minor cleaning up. commit 236be322887fe54978608e44cc731dc590cee5e9 Author: Alan Garny '' Date: Tue Aug 21 08:53:56 2018 +0200 Some minor cleaning up. commit c7415a7261b6fb77c7a16d850b7ed9aef5f29c06 Author: Alan Garny '' Date: Tue Aug 21 08:50:37 2018 +0200 Some minor cleaning up. commit 67e1e95c5e6a3c8bbe8153deb6286aff6737d9e2 Author: Alan Garny '' Date: Tue Aug 21 07:58:54 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit ac895c0bffefbf68117a63309686aba7e6854c25 Author: Alan Garny '' Date: Mon Aug 20 23:10:31 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 3cdf7cc28b160a490f6b0ffb8dad33a25e045600 Author: Alan Garny '' Date: Mon Aug 20 22:28:38 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 55b5e9edc9287506a158f21aa48b7c841323a841 Author: Alan Garny '' Date: Mon Aug 20 22:26:50 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 36ad0dc379407a78fc7df8d87da89311bb65f689 Author: Alan Garny '' Date: Mon Aug 20 22:25:10 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 98dc40d6935f5e99e9ffd5aec5c165aeb510266c Author: Alan Garny '' Date: Mon Aug 20 22:18:37 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit c740d3567efdef24f28244dbfc89eb1471e1ece4 Author: Alan Garny '' Date: Mon Aug 20 18:15:17 2018 +0200 Some minor cleaning up. commit 9e221118f01e64fb0e145d929af61b60064fcbb2 Author: Alan Garny '' Date: Mon Aug 20 17:52:24 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 91d1ef425a32afb86cddf7463a18a5d2181a7d0f Author: Alan Garny '' Date: Mon Aug 20 17:32:13 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit c3ff92870a3f07613dadda655dc5d2782ee413f0 Author: Alan Garny '' Date: Mon Aug 20 16:44:06 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit a5e20f14e18e624cbfbff2fcf15ec0f408bfe525 Author: Alan Garny '' Date: Mon Aug 20 16:12:36 2018 +0200 Some minor cleaning up. commit 85a1ca79587836a284fb55dd906fe586944696e7 Author: Alan Garny '' Date: Mon Aug 20 15:33:29 2018 +0200 Some minor cleaning up. commit 5c5731debcb10142fb90b45baab7d52e76104c04 Author: Alan Garny '' Date: Mon Aug 20 15:00:48 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit b39798bc3715b6dc3ea3b74fe2d15a737c575278 Author: Alan Garny '' Date: Mon Aug 20 14:32:15 2018 +0200 Some minor cleaning up. commit 094cd66928323e703482fbc91c5256810660c66c Author: Alan Garny '' Date: Mon Aug 20 14:29:53 2018 +0200 Some minor cleaning up. commit b72ca626f7debc75d30423e99e0a72469a034a17 Author: Alan Garny '' Date: Mon Aug 20 12:27:14 2018 +0200 Property editor: only handle the escape key if needed. commit f4dfc5326853c4a8ab7c200092d9235e13213f03 Author: Alan Garny '' Date: Mon Aug 20 11:57:35 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 48d48e4832bbba9242f9b7297335ca0d3008ccb8 Author: Alan Garny '' Date: Mon Aug 20 11:38:14 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit 0bac7220f5834bb644773e39e2b04e25f4dff3a3 Author: Alan Garny '' Date: Mon Aug 20 10:12:59 2018 +0200 Simulation Experiment view: some work on allowing for some basic preferences '(#1772).' commit c8633b60ac77a0263ac2685c14ba4282a9da3050 Author: Alan Garny '' Date: Mon Aug 20 09:48:09 2018 +0200 Some minor cleaning up. commit 023df52ebb69ad8d0dc515c6ef470527c676556a Author: Alan Garny '' Date: Mon Aug 20 09:33:35 2018 +0200 Some minor cleaning up. commit 940df638f7e83a40a77dae7433b676a9dac20e9e Author: Alan Garny '' Date: Mon Aug 20 09:22:04 2018 +0200 Some minor cleaning up. commit a3569a6d92268e8b7a46bad356bc4cd1bbefb92c Merge: 66e351ae2 d671f1a5d Author: Alan Garny '' Date: Fri Aug 17 18:58:34 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit d671f1a5da0c093bf177138a65d3a52c3be1e669 Merge: dba4ef228 540cb7986 Author: Alan Garny '' Date: Fri Aug 17 18:39:43 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(closes' '#1767).' commit 540cb798695634a78c8489b4f3b8cbe00dfb1f85 Author: Alan Garny '' Date: Fri Aug 17 18:24:58 2018 +0200 libgit2 package: new Windows builds '(#1767).' commit c0248c5af80d12badb13219795d61f0915cff6ac Author: Alan Garny '' Date: Fri Aug 17 18:19:53 2018 +0200 'Don'\''t' only build our libgit2 package '(#1767).' commit 4f2ef8c079eaedf7f48afd0e57fb4a308884ef9f Author: Alan Garny '' Date: Fri Aug 17 18:19:01 2018 +0200 libgit2 package: new Linux and macOS builds '(#1767).' commit f9c023211b3fc8130745d9d316ad0085cfc734b5 Author: Alan Garny '' Date: Fri Aug 17 18:11:42 2018 +0200 Only build our libgit2 packages '(#1767).' commit 40ebfb6688d75a80cfeb2b2e17eda86de1e643ce Author: Alan Garny '' Date: Fri Aug 17 18:10:54 2018 +0200 OpenSSL package: new Windows builds '(#1767).' commit 2d91dfd981995cc8b70b3c6db3f660a6cfff7672 Author: Alan Garny '' Date: Fri Aug 17 18:02:28 2018 +0200 OpenSSL package: new Linux and macOS builds '(#1767).' commit fb5960897b8bb17035385bc33b8a0de43b30b982 Author: Alan Garny '' Date: Fri Aug 17 17:46:15 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit d46e79421074e345f441c412c8809680dad7c155 Author: Alan Garny '' Date: Fri Aug 17 17:41:17 2018 +0200 Slight update to our downloads page '(#1767).' commit 968d16b1da1dd50b05af73dba27406568431afd8 Author: Alan Garny '' Date: Fri Aug 17 17:39:18 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit 3eca53b16aef0c0b1262f08319d6afb09bae6eb0 Author: Alan Garny '' Date: Fri Aug 17 17:26:27 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit e3ce74ba71597054341ea1c92733e358865d2596 Author: Alan Garny '' Date: Fri Aug 17 17:08:24 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit b64a32bf61baf469abd44f814284f53dd98e3df2 Author: Alan Garny '' Date: Fri Aug 17 16:44:57 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit 914de00713b39df0d18f00f95c120bcacfdc928e Author: Alan Garny '' Date: Fri Aug 17 16:29:59 2018 +0200 OpenSSL: upgraded to version 1.0.2p '(#1767).' commit bb6bf7b823cc0a0e0c6ddc3012176f2e35e515f1 Author: Alan Garny '' Date: Fri Aug 17 16:19:58 2018 +0200 Only build our libgit2 and OpenSSL packages '(#1767).' commit a69d863fea76518732cfe6a89e2ad4b942ded31f Merge: 42da2cc27 dba4ef228 Author: Alan Garny '' Date: Fri Aug 17 10:10:31 2018 +0200 Merge branch ''\''master'\''' into issue1767. commit dba4ef228ff067f9f6f2d91bb918d611db4e663b Merge: 3ff613d56 8085d158f Author: Alan Garny '' Date: Fri Aug 17 10:08:21 2018 +0200 Cleaning up. commit 8085d158f1f0c9f633ece8c62036811ecc6ba292 Author: Alan Garny '' Date: Fri Aug 17 09:49:31 2018 +0200 Some minor cleaning up. commit 42da2cc276b6778d10504a39986fc3c0aa393161 Author: Alan Garny '' Date: Fri Aug 17 09:12:30 2018 +0200 Some minor cleaning up. commit 6c883512da7b72d37090cd31ff6c9b654cb234de Author: Alan Garny '' Date: Fri Aug 17 09:12:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 359ae5f06408bd4e09935de9fee61f03cd3c552b Author: Alan Garny '' Date: Thu Aug 16 16:09:03 2018 +0200 Some minor cleaning up. commit 338b951b3d9c1a31f9379ab4f8253ab9e8b27b5d Author: Alan Garny '' Date: Thu Aug 16 16:02:11 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 894113a980e933bc46fc7b6c3a53d3dc827c9540 Author: Alan Garny '' Date: Thu Aug 16 15:47:16 2018 +0200 Some minor cleaning up. commit bf1ec635e106458d5048e4542e2d5732235504df Author: Alan Garny '' Date: Thu Aug 16 09:39:10 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 0d14b943bc768e327f3351852f85e6ee4babee86 Author: Alan Garny '' Date: Wed Aug 15 22:38:43 2018 +0200 'Don'\''t' only build our libgit2 and OpenSSL packages '(#1767).' commit 1876f062bae73442b594e18c78c624d43a38c8fd Author: Alan Garny '' Date: Wed Aug 15 22:17:01 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 4ad7315a0dcc77a28f42afedd6c96ecc0600a07c Author: Alan Garny '' Date: Wed Aug 15 22:13:42 2018 +0200 libgit2: new Windows binaries '(#1767).' commit d779916942f760d64b5101b0c4fa46ac80c7be80 Author: Alan Garny '' Date: Wed Aug 15 22:12:46 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 8457167ef468938b0010d0e590e02e169711e4ef Author: Alan Garny '' Date: Wed Aug 15 21:16:15 2018 +0200 OpenSSL: new Windows binaries '(#1767).' commit 18d8ddaca04b5d2cadc522f4482b0b8ca2dbc647 Author: Alan Garny '' Date: Wed Aug 15 21:07:43 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit cefda7b70603eb86c15c5409879435037a61f702 Author: Alan Garny '' Date: Wed Aug 15 17:45:17 2018 +0200 OpenSSL: new Windows binaries '(#1767).' commit cf8506bbcd28c890454eb054e0bd2edd5f05695c Author: Alan Garny '' Date: Wed Aug 15 17:39:03 2018 +0200 libgit2: new Linux and macOS binaries '(#1767).' commit 77821a71a05a381d0a9ee08dc78c6c7fa273e1ba Author: Alan Garny '' Date: Wed Aug 15 17:23:32 2018 +0200 OpenSSL: new Linux and macOS binaries '(#1767).' commit 13155a7909cf188c7add897959047902222752d7 Author: Alan Garny '' Date: Wed Aug 15 16:50:22 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' For some reasons, we $'can\342\200\231t' configure with '`no-tests`' and, in fact, tests seem to be disabled by default. commit 33dfc053ff94ee9cd9c51a633c0c183ed3cb2233 Author: Alan Garny '' Date: Wed Aug 15 16:27:03 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 8474dba3f253d5d317f486303a8bb58bee8da2df Author: Alan Garny '' Date: Wed Aug 15 16:01:50 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 79e20ced6a507bc7ad68cb803690529b421c9d32 Author: Alan Garny '' Date: Wed Aug 15 15:53:08 2018 +0200 Only build our libgit2 and OpenSSL packages '(#1767).' commit a66003d506bc2d15597e3bd4b10cbf6b597c814c Author: Alan Garny '' Date: Wed Aug 15 10:30:20 2018 +0200 Revert '"New' 'snapshot."' This reverts commit 14c1289e121576d26025f85e591b0fa67719a8ed. commit 14c1289e121576d26025f85e591b0fa67719a8ed Author: Alan Garny '' Date: Wed Aug 15 00:01:38 2018 +0200 New snapshot. commit 66e351ae2316e9f8a391f1964163a11c44b262e0 Merge: 039994936 3ff613d56 Author: Alan Garny '' Date: Tue Aug 14 23:23:04 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 3ff613d5631a473416960ccf94f66dfbe8053ce4 Merge: 3e6a65bec ea256f913 Author: Alan Garny '' Date: Tue Aug 14 23:20:35 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(closes' '#1767).' commit ea256f913afaac6488ac7aeb17c99c066c04e92c Author: Alan Garny '' Date: Tue Aug 14 23:01:54 2018 +0200 Slight update to our downloads page '(#1767).' commit 35730c9eb386044cfce29dd81a7eec69882597ab Author: Alan Garny '' Date: Tue Aug 14 23:00:29 2018 +0200 Stop only building our OpenSSL and libgit2 packages '(#1767).' commit bc27f4512a554f75f65281b9835835c2e2323a4c Author: Alan Garny '' Date: Tue Aug 14 22:59:14 2018 +0200 libgit2 and OpenSSL packages: new binaries '(#1767).' commit dfcd4634ffdda2340d21d13bf513d137789e50ec Author: Alan Garny '' Date: Tue Aug 14 22:26:34 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 1fcb875406e4105b323a34d2e2bab29ebd7c1a59 Author: Alan Garny '' Date: Tue Aug 14 20:58:23 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit b39deae7b7e0cc5f858b464ce8e3331b3bbb3b33 Author: Alan Garny '' Date: Tue Aug 14 20:27:54 2018 +0200 Only build our OpenSSL and libgit2 packages '(#1767).' commit 35cb1ff2e53deea09932311d88fec0ebb76733b6 Author: Alan Garny '' Date: Tue Aug 14 20:26:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 022749bbfcb3c6a166e41bc09cac7485e38df318 Author: Alan Garny '' Date: Tue Aug 14 18:47:22 2018 +0200 Only build our OpenSSL and libgit2 packages '(#1767).' commit 44ba88548cd46194bfd861b57da0292f354f240a Author: Alan Garny '' Date: Tue Aug 14 18:21:12 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 0708697a47620400d71e2e0a9ccd0637e1a75808 Author: Alan Garny '' Date: Tue Aug 14 16:34:16 2018 +0200 OpenSSL: upgraded to version 1.1.0i '(#1767).' commit 06b65df72f90968b588bfecfb74ffd96fbbeea1f Author: Alan Garny '' Date: Tue Aug 14 16:33:37 2018 +0200 Only build our OpenSSL package '(#1767).' commit 0399949367f9edc2a50dd4ad87d257ff61d5f9ed Merge: 03bb808be 3e6a65bec Author: Alan Garny '' Date: Tue Aug 14 11:49:45 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 3e6a65bec8271e7b4d9721026ea10676fc7e855a Merge: 8d2c2c32c 77de90c04 Author: Alan Garny '' Date: Tue Aug 14 11:46:21 2018 +0200 Slight updates to our main README.rst file. commit 77de90c04a67ce576d855f24dcb3833c662cd09c Author: Alan Garny '' Date: Tue Aug 14 11:25:31 2018 +0200 Slight updates to our main README.rst file. commit 03bb808be2272efa9b8daef02f7f9e7ac513a640 Merge: c2e88ceaa 8d2c2c32c Author: Alan Garny '' Date: Tue Aug 14 10:47:02 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 8d2c2c32cb132544729fb3ba8f376b098fc63203 Merge: ee68433c0 13a4317c1 Author: Alan Garny '' Date: Tue Aug 14 10:45:03 2018 +0200 General: improved HiDPI support '(closes' '#1763).' commit 13a4317c165076ae50883a7f4972847cb649c638 Merge: dc3ce0b30 ee68433c0 Author: Alan Garny '' Date: Tue Aug 14 10:22:27 2018 +0200 Merge branch ''\''master'\''' into hidpi. commit ee68433c00901cff693ebddf092523104eb044b1 Merge: 4c1f5c0d9 00e8321c4 Author: Alan Garny '' Date: Tue Aug 14 10:21:45 2018 +0200 Some minor cleaning up. commit dc3ce0b30248cd485b4b6ea0462548b5be9e75d3 Merge: be155655c 00e8321c4 Author: Alan Garny '' Date: Tue Aug 14 10:13:18 2018 +0200 Merge branch ''\''cleaning-up'\''' into hidpi. commit be155655cb2c8f391f6cd523891e13efe9480833 Author: Alan Garny '' Date: Tue Aug 14 10:12:19 2018 +0200 Slight update to our downloads page '(#1763).' commit 00e8321c45b40b7a309f34ad8b51d7c50e9af0e9 Author: Alan Garny '' Date: Tue Aug 14 10:04:33 2018 +0200 Some minor cleaning up. commit 6bca7d98ca1184fcf75176ffef045e424b7a8eeb Author: Alan Garny '' Date: Tue Aug 14 09:50:33 2018 +0200 General: improve HiDPI support by forcing the use of 96 DPI '(!!)' '(#1763).' commit 2f1d0dfe3fc5785f2b879c4e7c6b1ca5a62e62ef Author: Alan Garny '' Date: Tue Aug 14 09:40:59 2018 +0200 General: improve HiDPI support by fixing the size of our icons '(#1763).' commit 8a63dcb83fe1d7df742dc07ae0b408df30430d42 Author: Alan Garny '' Date: Tue Aug 14 09:39:58 2018 +0200 Some minor cleaning up. commit 10deb980b02cb74d395837a023822356b919d911 Author: Alan Garny '' Date: Tue Aug 14 08:53:48 2018 +0200 Some minor cleaning up. commit 0b9ce544d8f770676cefb32e16e510c3bbc022e5 Author: Alan Garny '' Date: Tue Aug 14 08:51:29 2018 +0200 Some minor cleaning up. commit c2e88ceaa8aaddc68f6b28f08e601a84176beb59 Merge: 6e19bce55 4c1f5c0d9 Author: Alan Garny '' Date: Tue Aug 14 07:52:50 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 4c1f5c0d926f258a382b7fa7d3d5a72cef60cb6b Merge: 9e64a28aa d26cc900f Author: Alan Garny '' Date: Tue Aug 14 07:50:36 2018 +0200 General: allow the use of another Qt style '(closes' '#1761).' commit d26cc900fc8a6158fd46d7808799291efe60ae82 Author: Alan Garny '' Date: Mon Aug 13 22:03:30 2018 +0200 General: allow the use of another Qt style '(#1761).' It looks like for Windows 7 and Windows 10, the Qt style is actually $'\342\200\234WindowsVista\342\200\235' rather than $'\342\200\234Windows\342\200\235.' commit d46cb053ffe4fb23625424177002ae285da8bcde Author: Alan Garny '' Date: Mon Aug 13 19:02:27 2018 +0200 Slight update to our downloads page '(#1761).' commit 4711bd9823c25e4ad36d294637f48a025a56694c Author: Alan Garny '' Date: Mon Aug 13 18:54:57 2018 +0200 General: allow the use of another Qt style '(#1761).' commit 1663e5b6d67c207e5d7e780695a014214acc62d3 Author: Alan Garny '' Date: Mon Aug 13 18:44:27 2018 +0200 General: allow the use of another Qt style '(#1761).' commit ce0223ccad89c8538f3138f1775c8dc245e676d4 Author: Alan Garny '' Date: Mon Aug 13 18:27:30 2018 +0200 PMR support: make sure that preferences get properly reset/saved. commit 6e19bce5521cc2ef47c35c33c61fc8c7bf2b81ce Merge: be3a0740d 9e64a28aa Author: Alan Garny '' Date: Mon Aug 13 14:59:39 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 9e64a28aaa4461d60d7508ca58224803d82891f4 Merge: f52ee5ff3 29ad6fdaf Author: Alan Garny '' Date: Mon Aug 13 14:58:38 2018 +0200 Core plugin: fixed a problem with menu items in the File '|' Reopen menu potentially appearing as disabled '(closes' '#1633).' commit 29ad6fdafc738a3b612be98a0acd111345650185 Author: Alan Garny '' Date: Mon Aug 13 14:36:46 2018 +0200 Slight updates to our downloads page. commit a16c99d9743298b9e6a1ca377b5d8cac5d1d245d Author: Alan Garny '' Date: Mon Aug 13 14:30:09 2018 +0200 Slight updates to our downloads page '(#1633).' commit b54722c4c9703bd75121fed4d432abd4931043e3 Author: Alan Garny '' Date: Mon Aug 13 14:28:37 2018 +0200 Core plugin: fixed a problem with menu items in the File '|' Reopen menu potentially appearing as disabled '(#1633).' commit f52ee5ff3f4c2eb6ea8ea40c5e8b25213cc56538 Merge: fef29da53 3ec93a154 Author: Alan Garny '' Date: Mon Aug 13 14:19:41 2018 +0200 Cleaning up. commit 3ec93a154b64db971e15373982cf7a6abf1bdc1a Author: Alan Garny '' Date: Mon Aug 13 13:48:55 2018 +0200 Some minor cleaning up. commit e841588191f564258b4da6d5139c42c6e03a7210 Author: Alan Garny '' Date: Mon Aug 13 13:43:58 2018 +0200 Some minor cleaning up. commit afabf8de4ed4427fbf2c6327d5864be57df5ffe7 Author: Alan Garny '' Date: Mon Aug 13 13:29:27 2018 +0200 Some minor cleaning up. commit d5fa1af9e957136824c0ae355ecbe10c6d5a8bf7 Author: Alan Garny '' Date: Mon Aug 13 13:28:29 2018 +0200 Some minor cleaning up. commit 403f7c922cf1b35d6fb2a87744f6f5f6d28ba738 Author: Alan Garny '' Date: Mon Aug 13 11:26:58 2018 +0200 Some minor cleaning up. commit d49272839219f612ca6f87d31e331cb915e3188d Author: Alan Garny '' Date: Mon Aug 13 11:01:00 2018 +0200 Some minor cleaning up. commit 51d24b484e52b66d84bf23e4ac5287c4f09aaaa7 Author: Alan Garny '' Date: Mon Aug 13 10:47:39 2018 +0200 Some minor cleaning up. commit 5694db86ce3e4ffc6a18f0aca309ed6edc022912 Author: Alan Garny '' Date: Mon Aug 13 10:43:00 2018 +0200 Some minor cleaning up. commit be3a0740d84f786b88e661b3e6dfd473705e3f1e Author: Alan Garny '' Date: Fri Aug 10 17:39:53 2018 +0200 Some minor cleaning up. commit c74aeca7f6be2517a7b65f76ec79ada7ac763241 Author: Alan Garny '' Date: Fri Aug 10 17:27:34 2018 +0200 Some minor cleaning up. commit 6b14c1ffa8a18defd8cc12fc9b1485f2e16ca2ba Author: Alan Garny '' Date: Fri Aug 10 17:03:02 2018 +0200 Some minor cleaning up. commit 06739e649bf54ff3f4dd27b3b62da6927f5f40f2 Author: Alan Garny '' Date: Fri Aug 10 16:48:30 2018 +0200 Some minor cleaning up. commit 6d41eda490c5a6cf2a48e2d78c121603f64fab65 Author: Alan Garny '' Date: Fri Aug 10 15:43:35 2018 +0200 Some minor cleaning up. commit 892d08291922b6c134ca25a17138e67b2f0a103d Merge: 75f69f5f7 fef29da53 Author: Alan Garny '' Date: Thu Aug 9 19:44:38 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit fef29da53f92bb2d2e4a95eeae8c393d70692826 Merge: 20643e181 966322160 Author: Alan Garny '' Date: Thu Aug 9 19:43:56 2018 +0200 Renamed '"Data' 'Store"' to '"Data' 'store".' commit 9663221603cc44d157c70da6bf0e4068afa17ad8 Author: Alan Garny '' Date: Thu Aug 9 18:54:32 2018 +0200 Renamed '"Data' 'Store"' to '"Data' 'store".' commit 75f69f5f70ee9acdf70acbd3c7cbe71a6abf6b72 Author: Alan Garny '' Date: Thu Aug 9 18:49:58 2018 +0200 Some minor cleaning up. commit ea641ac2a40dea62acd593a11b59a6def99de7a9 Merge: dda848119 20643e181 Author: Alan Garny '' Date: Thu Aug 9 18:45:31 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 20643e181707705907df95c8310a1902842ac10e Merge: 87e950d81 48266ca2b Author: Alan Garny '' Date: Thu Aug 9 18:44:41 2018 +0200 Clang code model related cleaning up '(#1747).' commit 48266ca2b5823e44b1017221a819342bf3653c99 Author: Alan Garny '' Date: Thu Aug 9 18:30:22 2018 +0200 Clang code model related cleaning up '(#1747).' commit dda848119ece25027ce5c4c68d6a8d619544a489 Author: Alan Garny '' Date: Thu Aug 9 11:52:05 2018 +0200 Some minor cleaning up. commit 05f149eb02ccb334d42727011287b344aaf6030f Merge: a5f47f665 87e950d81 Author: Alan Garny '' Date: Wed Aug 8 22:21:57 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 87e950d816aa114b0e0dcf4d42b92faec1cb2445 Merge: ae86dfbf3 bcc442cb9 Author: Alan Garny '' Date: Wed Aug 8 22:20:38 2018 +0200 BioSignalML plugin: rename it to libBioSignalML '(closes' '#1754).' commit bcc442cb9c3f6d8c31237d9ab53ba6834da907fa Author: Alan Garny '' Date: Wed Aug 8 21:41:45 2018 +0200 BioSignalML plugin: renamed it to libBioSignalML '(1754).' commit ae86dfbf3efcb41b54b6e7307955f88042a95f34 Merge: 93e345372 579cc663e Author: Alan Garny '' Date: Wed Aug 8 21:15:32 2018 +0200 Some minor cleaning up. commit 579cc663e18f75339f94228b8a7a52a3cf4e6799 Author: Alan Garny '' Date: Wed Aug 8 17:21:18 2018 +0200 Some minor cleaning up. commit 97833eaaae37ea33a7bd1dfafa1f3d7abb130592 Author: Alan Garny '' Date: Wed Aug 8 17:14:18 2018 +0200 Some minor cleaning up. commit 1762a76e7f09c042c8fc731fe8d8e955105b1f4f Author: Alan Garny '' Date: Wed Aug 8 15:05:05 2018 +0200 Some minor cleaning up. commit 2e78cdd5c78c17b84d5f4d3a64f8b903bc28594b Author: Alan Garny '' Date: Wed Aug 8 14:52:22 2018 +0200 Some minor cleaning up. commit 24dc61e88b3eeb814ab6357fe5d7577cefad11c1 Author: Alan Garny '' Date: Wed Aug 8 14:50:54 2018 +0200 Some minor cleaning up. commit efc5476a5518fe4b59deb8b10665a58382b79652 Author: Alan Garny '' Date: Wed Aug 8 13:23:13 2018 +0200 Some minor cleaning up. commit 2e8f3a82ca9bba3574d7e222af8ce06a32995014 Author: Alan Garny '' Date: Wed Aug 8 11:45:32 2018 +0200 Some minor cleaning up. commit a5f47f66509c98c859a3baac7453df4151ffca75 Author: Alan Garny '' Date: Wed Aug 8 08:49:54 2018 +0200 Help window: make sure that we can directly see images '(#1544).' Indeed, when we have a page with an image on its own '(e.g.' the GUI page in the user 'documentation),' then Sphinx will generate something like ',' which means that we can click on the image to get the image itself '(as' opposed to a web page with an image in 'it).' Until now, our Help window only supported '"proper"' web pages, not images or anything else. Now, it should support anything that a Web browser supports. commit 30eed050f1b1ef279f70b6be4b5dfdf4d9ca76db Author: Alan Garny '' Date: Tue Aug 7 22:17:05 2018 +0200 Some minor cleaning up. commit 793526df2cb68cfa0f9011627920d3df31bc7066 Author: Alan Garny '' Date: Tue Aug 7 21:47:45 2018 +0200 User documentation: make sure that we can see images '(#1544).' commit 00a6e2593f87437b8485f8577b81f2668184d698 Author: Alan Garny '' Date: Tue Aug 7 17:50:13 2018 +0200 Changed our requirements for screenshots. commit a4b0b9862c6b93857480dd6245bf88dc88e1c875 Author: Alan Garny '' Date: Tue Aug 7 16:40:37 2018 +0200 User documentation: make sure that we can see sub-pages '(#1544).' commit 0fc67f7c96fad59e994459b0b8c9f99e02d4beeb Merge: 7e8391547 93e345372 Author: Alan Garny '' Date: Tue Aug 7 10:55:35 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 93e3453728245287379e4ab4199c48ae5496ff7a Merge: 02f64f6b9 dc92446a2 Author: Alan Garny '' Date: Tue Aug 7 10:54:41 2018 +0200 Clang code model related cleaning up. commit dc92446a232a8e2466efb06f3d5e9e2cc9639d0f Author: Alan Garny '' Date: Tue Aug 7 10:40:32 2018 +0200 Clang code model related cleaning up. commit c6d5dcfb0736e8a778ab7f06225882177c16509f Author: Alan Garny '' Date: Tue Aug 7 10:34:32 2018 +0200 Clang code model related cleaning up. commit 0cdf8ec0d71d312b04b96c14713508f20e374fb6 Author: David Brooks '' Date: Tue Aug 7 11:25:00 2018 +1200 Python: '`run_python`' script works on all platforms. commit 20cf8bbfda017ccfef348f884c344228c900d56a Author: David Brooks '' Date: Tue Aug 7 10:52:10 2018 +1200 Python: '`run_python`' script works under macOS. commit 7e8391547908234b27df6aefc7787fc2b5309c22 Merge: 050680abe 02f64f6b9 Author: Alan Garny '' Date: Mon Aug 6 13:20:16 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 02f64f6b94d06c0b032b2c203d5f06a6371facc9 Merge: 74e15f44d 01ab74abf Author: Alan Garny '' Date: Mon Aug 6 13:18:50 2018 +0200 OpenSSL: move to the 1.1.x branch '(closes' '#1751).' commit 01ab74abf1e5e3b04343272b43dfc12818a04574 Author: Alan Garny '' Date: Mon Aug 6 12:23:14 2018 +0200 Slight update to our downloads page '(#1751).' commit 0b5ab8472cf78067360485fdfc14c37811de640c Author: Alan Garny '' Date: Mon Aug 6 12:20:55 2018 +0200 'Don'\''t' only build our OpenSSL '(and' 'libgit2)' package '(#1751).' commit faf767d5dd7ddd9a7316e07af857112e76a9c105 Author: Alan Garny '' Date: Mon Aug 6 12:20:00 2018 +0200 OpenSSL '(and' 'libgit2)' package: new binaries '(#1751).' commit 4518889bddac944fbcf9fe03cfbd89b257c10504 Author: Alan Garny '' Date: Mon Aug 6 11:37:06 2018 +0200 OpenSSL: move to the 1.1.x branch '(#1751).' commit 1cf072ed8e1ad7bd263ec8274e980af86e67154a Author: Alan Garny '' Date: Mon Aug 6 11:27:52 2018 +0200 Also build our libgit2 package '(#1751).' commit 64c3ac7f4b0396639e21cee80a739a839b776cb8 Author: Alan Garny '' Date: Mon Aug 6 11:27:10 2018 +0200 Also build our libgit2 package '(#1751).' commit 6368f70fb85cd3575b5581cf4df4f60bf35fa50a Author: Alan Garny '' Date: Mon Aug 6 11:16:03 2018 +0200 Only build our OpenSSL package '(#1751).' commit 959357941bfaf55698f7fc080ef5b0ab48126d52 Author: David Brooks '' Date: Mon Aug 6 21:11:53 2018 +1200 Python: work on utility to run OpenCOR Python code from the command line. commit 050680abe5d87a82adec5033a743db77d13afbd3 Merge: e97515349 74e15f44d Author: Alan Garny '' Date: Sat Aug 4 16:49:03 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 74e15f44d27860bbf46c46ec30f2d515aa409368 Merge: ffe6f7486 e2a052deb Author: Alan Garny '' Date: Sat Aug 4 16:47:46 2018 +0200 Some minor cleaning up. commit e2a052deb7e70eb27b95ffebc7aea3577fa8a094 Author: Alan Garny '' Date: Sat Aug 4 16:32:36 2018 +0200 Some minor cleaning up. commit e9751534968293262567ad613c2f0fc3814788eb Merge: 3541c3bc7 ffe6f7486 Author: Alan Garny '' Date: Sat Aug 4 16:24:19 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit ffe6f7486f8a60b21879184c210434326c6838a3 Merge: 134632df4 b8bbf9d71 Author: Alan Garny '' Date: Sat Aug 4 16:22:35 2018 +0200 Clang code model related cleaning up '(closes' '#1747).' commit b8bbf9d715d4278360a6a8c2ae161fe655dbf53e Author: Alan Garny '' Date: Sat Aug 4 15:44:36 2018 +0200 Clang code model related cleaning up '(#1747).' commit 506f5108e7da34c715a5b31d9fc7afd9a189ce53 Author: Alan Garny '' Date: Sat Aug 4 15:32:15 2018 +0200 Clang code model related cleaning up '(#1747).' commit 20c59e1a2011f92bb1877ae7330e43e144ea0793 Author: Alan Garny '' Date: Sat Aug 4 15:07:05 2018 +0200 Clang code model related cleaning up '(#1747).' Had to revert to this otherwise we $'can\342\200\231t' build on Windows using MSVC. commit 5bccab3cd9770be6c6d5e616fed07de44177f999 Author: Alan Garny '' Date: Sat Aug 4 15:01:57 2018 +0200 Clang code model related cleaning up '(#1747).' commit 9006151dd45111f5c5b6075655a18cc003521b66 Author: Alan Garny '' Date: Sat Aug 4 13:41:18 2018 +0200 Clang code model related cleaning up '(#1747).' commit 04ca2a4b15d9f5b8e021ad8b87d796d535dce8dc Author: Alan Garny '' Date: Sat Aug 4 11:37:43 2018 +0200 Clang code model related cleaning up '(#1747).' commit 722f244569bea114ef3eff72eba7a653742130f7 Author: Alan Garny '' Date: Sat Aug 4 11:33:25 2018 +0200 Clang code model related cleaning up '(#1747).' commit cf365e80b7036494bc1b4c230c2c1315fcc65d66 Author: Alan Garny '' Date: Sat Aug 4 11:28:28 2018 +0200 Clang code model related cleaning up '(#1747).' commit 8888eb6b21e1911f552bd0c618b08d527aaa7d08 Author: Alan Garny '' Date: Sat Aug 4 11:28:12 2018 +0200 Clang code model related cleaning up '(#1747).' commit f8c46556747bb035277d8962ec035a666eb46da4 Author: Alan Garny '' Date: Sat Aug 4 11:10:38 2018 +0200 Clang code model related cleaning up '(#1747).' commit fdc19b24b087469da4c66fb2553817fbecf60bde Author: Alan Garny '' Date: Sat Aug 4 10:34:37 2018 +0200 Clang code model related cleaning up '(#1747).' commit 098fcb19abb2ab3e4eb050a5a75443736d95e1b6 Author: Alan Garny '' Date: Sat Aug 4 10:13:04 2018 +0200 Some minor cleaning up. commit c67b743bf00d65beca606ce1aca5da5500f741e7 Author: Alan Garny '' Date: Sat Aug 4 10:11:24 2018 +0200 Clang code model related cleaning up '(#1747).' commit 08e78d159e371ca9bbf5bcdb2eac8308196fdb03 Author: Alan Garny '' Date: Sat Aug 4 09:49:34 2018 +0200 Clang code model related cleaning up '(#1747).' commit 829b71727504c4b0e25b66c51b7d5d677c93665f Author: Alan Garny '' Date: Sat Aug 4 09:32:03 2018 +0200 Clang code model related cleaning up '(#1747).' commit e23624979228cad70bbf92cb619844b148e17f4b Author: Alan Garny '' Date: Sat Aug 4 09:22:37 2018 +0200 Clang code model related cleaning up '(#1747).' commit ef443b58cd63041afb5e91a35855e2f5beebc7b1 Author: Alan Garny '' Date: Sat Aug 4 09:16:22 2018 +0200 Clang code model related cleaning up '(#1747).' commit 717c1c5ae0d6bab225cc27e11c21499e9be92a06 Author: Alan Garny '' Date: Sat Aug 4 09:09:36 2018 +0200 Clang code model related cleaning up '(#1747).' commit 4383e5a7deee6fc08f28dac95419cf8e912e2d17 Author: Alan Garny '' Date: Sat Aug 4 08:39:56 2018 +0200 Some minor cleaning up. commit 123578f6b3364939778623727c3e16931451eea1 Author: Alan Garny '' Date: Sat Aug 4 08:27:58 2018 +0200 Some minor cleaning up. commit fcf00aa758a8f3f03e00e6098c32fa15c0a3d033 Author: Alan Garny '' Date: Sat Aug 4 08:19:59 2018 +0200 Clang code model related cleaning up '(#1747).' commit 6176595a4027c1e79fb8ed3ec7aba344859ee1cc Author: Alan Garny '' Date: Sat Aug 4 00:15:16 2018 +0200 Clang code model related cleaning up '(#1747).' commit 144735e609fdfd87172809a4873c068dcf223c9b Author: Alan Garny '' Date: Fri Aug 3 23:58:05 2018 +0200 Clang code model related cleaning up '(#1747).' commit bb7ab86c91de14e7faaa2fb41cffea6af9ef9dd0 Author: Alan Garny '' Date: Fri Aug 3 23:42:19 2018 +0200 Clang code model related cleaning up '(#1747).' commit 08aa99dd31b408d4909bfddce503e4fa372d3033 Author: Alan Garny '' Date: Fri Aug 3 22:49:18 2018 +0200 Clang code model related cleaning up '(#1747).' commit e6d2334c567281356c8d3ff96dca81b3fadd5818 Author: Alan Garny '' Date: Fri Aug 3 22:32:56 2018 +0200 Clang code model related cleaning up '(#1747).' commit 2e9ea0035596fd39f28fd8665eb703483c9e25bb Author: Alan Garny '' Date: Fri Aug 3 22:11:12 2018 +0200 CellML support: fixed a small problem with 'CellmlFileRuntimeParameter::formattedUnit().' commit 93417b2a49bb8322f1b8600f98ff80136efdedc7 Author: Alan Garny '' Date: Fri Aug 3 21:23:23 2018 +0200 Clang code model related cleaning up '(#1747).' commit 590761daf628fbda4ffd5d5b6f6a7ad469f4dabc Author: Alan Garny '' Date: Fri Aug 3 18:47:15 2018 +0200 Clang code model related cleaning up '(#1747).' commit b13126200975f03aa9d3440d4a1039c30d6dea80 Author: Alan Garny '' Date: Fri Aug 3 18:40:17 2018 +0200 Clang code model related cleaning up '(#1747).' commit 7c5c44e1b30f1ff7cea9f70a9afe8ef9f2957dd4 Author: Alan Garny '' Date: Fri Aug 3 18:36:31 2018 +0200 Clang code model related cleaning up '(#1747).' commit 1bb9c628f275f762219a6b13fa0ae212a23730c9 Author: Alan Garny '' Date: Fri Aug 3 18:07:39 2018 +0200 Clang code model related cleaning up '(#1747).' commit 40c98877b884cdf4c708a735447aa0e8995f2631 Author: Alan Garny '' Date: Fri Aug 3 17:20:40 2018 +0200 Clang code model related cleaning up '(#1747).' commit a0d7b7ccbce6e91350ad3b0c81635cc0ce569506 Author: Alan Garny '' Date: Fri Aug 3 17:07:35 2018 +0200 Clang code model related cleaning up '(#1747).' commit 3c5b7201a13b048f2e56ee8bb908f77b600ff0ea Author: Alan Garny '' Date: Fri Aug 3 17:03:25 2018 +0200 Clang code model related cleaning up '(#1747).' commit 3953291c4980c29eb298276fad8bcdf9fb8fa9ce Author: Alan Garny '' Date: Fri Aug 3 16:28:42 2018 +0200 Clang code model related cleaning up '(#1747).' commit 89e545619fad43f078f6a9eddb07f28dc304fe60 Author: Alan Garny '' Date: Fri Aug 3 16:06:31 2018 +0200 Clang code model related cleaning up '(#1747).' commit 1dfbd7c2b75c61384cdecc91cf377b42660e128e Author: Alan Garny '' Date: Fri Aug 3 15:23:34 2018 +0200 Clang code model related cleaning up '(#1747).' commit f405530a712d61983f8104ea1842cb847a7c390b Author: Alan Garny '' Date: Fri Aug 3 15:19:29 2018 +0200 Clang code model related cleaning up '(#1747).' commit 8094b2232e0167693ac53c5e01d2eb6e797ef492 Author: Alan Garny '' Date: Fri Aug 3 15:13:14 2018 +0200 Clang code model related cleaning up '(#1747).' commit 543da68e5e33ee84b028e5e4f773453824d13772 Author: Alan Garny '' Date: Fri Aug 3 15:11:19 2018 +0200 Clang code model related cleaning up '(#1747).' commit 9574fd12b3c54a5ef03e31a208043aa5e790af69 Author: Alan Garny '' Date: Fri Aug 3 15:09:49 2018 +0200 Clang code model related cleaning up '(#1747).' commit 8c170333c2436eafa99b130c1f2362200685fb77 Author: Alan Garny '' Date: Fri Aug 3 15:06:43 2018 +0200 Clang code model related cleaning up '(#1747).' commit bd2fbe6e8b26fd1a404d9715667892d9ce64c5ff Author: Alan Garny '' Date: Fri Aug 3 15:05:13 2018 +0200 Clang code model related cleaning up '(#1747).' commit 2cf5abe7469e2ffd679805d46d7c01809bca0fd1 Author: Alan Garny '' Date: Fri Aug 3 15:03:15 2018 +0200 Clang code model related cleaning up '(#1747).' commit ed7a8c92c1698184e5d7848222f7c7eb4c36258c Author: Alan Garny '' Date: Fri Aug 3 14:50:40 2018 +0200 Clang code model related cleaning up '(#1747).' commit cddab9ce3bc7690becdbf4ce73a8e7687d5a7c9a Author: Alan Garny '' Date: Fri Aug 3 14:47:39 2018 +0200 Clang code model related cleaning up '(#1747).' commit e17f490b92de2cffa6d1eb4b3c383bfd30ba6b09 Author: Alan Garny '' Date: Fri Aug 3 14:39:03 2018 +0200 Clang code model related cleaning up '(#1747).' commit 3e165f53ae37ee170ef793153513c08eee7227d7 Author: Alan Garny '' Date: Fri Aug 3 13:43:04 2018 +0200 Clang code model related cleaning up '(#1747).' commit 5ab8444c653ceabc98ce475cc50a7a1af83386cf Author: Alan Garny '' Date: Fri Aug 3 13:25:44 2018 +0200 Clang code model related cleaning up '(#1747).' commit 274f5ba8b37cab3ccbd6a4510cd0f26a0984ff85 Author: Alan Garny '' Date: Fri Aug 3 13:18:27 2018 +0200 Clang code model related cleaning up '(#1747).' commit 3541c3bc7e64d0e90240d9c66bd0d8fcf9a579c1 Merge: a6e76e9bb 134632df4 Author: Alan Garny '' Date: Thu Aug 2 16:50:35 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 134632df493964a998ed802113b9e4a6d403a539 Merge: a1ede63e1 3bf9afe69 Author: Alan Garny '' Date: Thu Aug 2 16:49:50 2018 +0200 Removed the Analysis category of plugins. commit 3bf9afe6921748012cb8b805c8cf5e75878fb6f8 Author: Alan Garny '' Date: Thu Aug 2 16:13:23 2018 +0200 Removed the Analysis category of plugins. Indeed, although we might have some analysis plugins at some point, it happens that we 'don'\''t' have any at this stage, so no point in handling that category for now. commit a6e76e9bb0c8236ca992decbc2d5570f22507da7 Merge: 1d89165fe a1ede63e1 Author: Alan Garny '' Date: Thu Aug 2 15:36:14 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit a1ede63e18e90d8278bdd3f8b642d067d7396a01 Merge: 12acfba62 3ea1480fd Author: Alan Garny '' Date: Thu Aug 2 15:35:22 2018 +0200 SUNDIALS: upgrade to version 3.1.2 '(closes' '#1743).' commit 3ea1480fdd7bf510bebdf0cf896b31adf58fa83d Author: Alan Garny '' Date: Thu Aug 2 15:11:25 2018 +0200 Slight updates to our downloads pages '(#1743).' commit 58d29b51460a76be48a1c31fa3343bd2695b00e6 Author: Alan Garny '' Date: Thu Aug 2 15:08:48 2018 +0200 'Don'\''t' build the SUNDIALS package only '(#1743).' commit 09d42ff46768679bba5db4c1363ca0a4e56c9134 Author: Alan Garny '' Date: Thu Aug 2 15:07:48 2018 +0200 SUNDIALS package: new binaries '(#1743).' commit e7f7475b5385f69b9a3d4c1154c6377684467f5b Author: Alan Garny '' Date: Thu Aug 2 11:35:48 2018 +0200 SUNDIALS package: upgraded to version 3.1.2 '(#1743).' commit 0f03b020962e6f60e94b3d2c08c4b0fdc14230b8 Author: Alan Garny '' Date: Thu Aug 2 10:32:18 2018 +0200 Only build our SUNDIALS package '(#1743).' commit 1d89165fee35cc1692a0090c4628926e1ef7bca4 Merge: d4f59582a 12acfba62 Author: Alan Garny '' Date: Fri Jul 20 14:02:46 2018 -1000 Merge branch ''\''master'\''' into issue1544. commit 12acfba62a558e426013a4a2fe35e017e21dad73 Merge: d4d59c38a 7a42c9253 Author: Alan Garny '' Date: Fri Jul 20 14:01:36 2018 -1000 Replaced some 'dynamic_cast'\''s' with a qobject_cast. commit 7a42c925388b3b3ace33383b9c31240846b52c34 Author: Alan Garny '' Date: Fri Jul 20 13:27:04 2018 -1000 Some minor cleaning up. commit fd55474e5e5fee940aa7c76338a5f2dde5089aea Author: Alan Garny '' Date: Fri Jul 20 13:26:43 2018 -1000 Replaced some 'dynamic_cast'\''s' with a qobject_cast. commit d4f59582a62ebe01ec296ac628cbeaa1dab46dcc Author: Alan Garny '' Date: Fri Jul 20 10:41:20 2018 -1000 Fixed the location of some CellML test files '(#1544).' commit 293736936116096d82b628208e85cf3f36d4c4d7 Merge: 2823a010c d4d59c38a Author: Alan Garny '' Date: Thu Jul 19 17:41:03 2018 -1000 Merge branch ''\''master'\''' into issue1544. commit d4d59c38a978ec640b87047f7cbd99ac94aefa7d Merge: 044ddcc22 e2ab24a34 Author: Alan Garny '' Date: Thu Jul 19 17:38:05 2018 -1000 New snapshot. commit e2ab24a34d52dbc6f18595dba4c7ad89e15811f3 Author: Alan Garny '' Date: Thu Jul 19 17:22:33 2018 -1000 New snapshot. commit 37e2af7620fc7755b8b98ea7b35a800b426a8921 Author: Alan Garny '' Date: Thu Jul 19 17:19:55 2018 -1000 Slight update to our downloads page. commit 044ddcc22592c7679379b2c622da9405ebbbb8ae Merge: ad4c9a8ac e36d2b096 Author: Alan Garny '' Date: Tue Jul 17 19:52:54 2018 -1000 Various cleaning ups and improvements to our busy widget framework. commit e36d2b09681dea058c159074640a33d06c2a6d91 Author: Alan Garny '' Date: Tue Jul 17 19:07:17 2018 -1000 Busy widget: allow the forcing of its hiding. This is needed for the CellML Annotation view since the looking up of a ontological terms may result in several showing of the busy widget, but only one '(final)' hiding of it. commit 3d8ad37a124a673bfcb8f79dbb9c86c7a3fb0598 Author: Alan Garny '' Date: Tue Jul 17 18:44:28 2018 -1000 Busy widget: make it reentrant and only show itself if its owner is visible. Indeed, to open about a SED-ML file would otherwise have resulted in the busy widget being shown, shown, hidden and hidden, with the second $'\342\200\234shown\342\200\235' being due to reading the corresponding CellML file. commit 0a0d80c92bccc8376d84f6a91776de5570aab907 Author: Alan Garny '' Date: Tue Jul 17 17:59:59 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in 'CentralWidget::updateGui()' rather than 'MainWindow::updateGui().' This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This $'didn\342\200\231t' use to happen, but is the indirect result of our use of the busy widget '(see' the notes in commit '5ed445d).' commit 4a8816177fca03d83b909efa489dd1e9683cd341 Author: Alan Garny '' Date: Tue Jul 17 17:57:08 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in 'CentralWidget::updateGui()' rather than 'MainWindow::updateGui().' This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This $'didn\342\200\231t' use to happen, but is the indirect result of our use of the busy widget '(see' the notes in commit '5ed445d).' commit d027c998a7efce74622006e5a0cacbbc78f75717 Author: Alan Garny '' Date: Tue Jul 17 17:55:30 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in 'CentralWidget::updateGui()' rather than 'MainWindow::updateGui().' This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This $'didn\342\200\231t' use to happen, but is the indirect result of our use of the busy widget '(see' the notes in commit '5ed445d).' commit 35e2890f09d5d71459b22cebe53e033346fe1836 Author: Alan Garny '' Date: Tue Jul 17 17:32:24 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in 'CentralWidget::updateGui()' rather than 'MainWindow::updateGui().' This needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This $'didn\342\200\231t' use to happen, but is the indirect result of our use of the busy widget '(see' the notes in commit '5ed445d).' commit 8b2d7d4469e6013f99d58760991b56e02b137e35 Author: Alan Garny '' Date: Tue Jul 17 16:50:07 2018 -1000 Central widget: get our loaded GUI plugins to update themselves in 'CentralWidget::updateGui()' rather than 'MainWindow::updateGui().' This work needs a bit more refactoring, but the idea is to prevent a GUI glitch when opening a remote file. Indeed, such a file would, in a text-based view, have a reddish background. However, that background would not always appear and when it would, it would only do so after a split second, which is clearly not ideal. This $'didn\342\200\231t' use to happen, but is the indirect result of our use of the busy widget '(see' the notes in commit '5ed445d).' commit 702fd8deadc156cf010a3c3318a0ac15dc24d9aa Author: Alan Garny '' Date: Tue Jul 17 16:37:07 2018 -1000 Some minor cleaning up. commit c13fe134760100af66e8173504116f218c8904e6 Author: Alan Garny '' Date: Tue Jul 17 14:48:40 2018 -1000 Some minor cleaning up. commit 1daaf71cd4fa58c9586452621b1f18f903e9ba8c Author: Alan Garny '' Date: Tue Jul 17 14:43:28 2018 -1000 Some minor cleaning up. commit abff33bccdd594aefeee104c4a09a3351095c286 Author: Alan Garny '' Date: Tue Jul 17 14:24:03 2018 -1000 Busy widget: 'don'\''t' support nested calls anymore. We used to support nested calls because of our former calls to 'readFileWithBusyWidget()' '(see' commits 3011d9b and '5ed445d),' but it $'wasn\342\200\231t' the proper way of doing things. commit 5ed445d93770248d9911fd9047046c6c1796e439 Author: Alan Garny '' Date: Tue Jul 17 13:59:41 2018 -1000 Removed our 'readFileWithBusyWidget()' methods. Indeed, in half of the cases where we were using them, we $'didn\342\200\231t' want to hide our busy widget, $'so\342\200\246' no point in having them as $'such\342\200\246' commit 3011d9ba0daa59fa4dd91d60408cbe0874f346a7 Author: Alan Garny '' Date: Tue Jul 17 13:25:08 2018 -1000 Some minor cleaning up. commit 2cd79f72831a8926ebd5b21f4d88d495cedd8058 Author: Alan Garny '' Date: Tue Jul 17 12:18:54 2018 -1000 Some minor cleaning up. commit 4e6140f16b9c2e6e646eeca615746ce3cde19523 Author: Alan Garny '' Date: Tue Jul 17 09:44:25 2018 -1000 QScintilla support: some minor cleaning up. commit 1cea09f04cf24638f97b3142748681972eb3534f Author: Alan Garny '' Date: Mon Jul 16 16:59:00 2018 -1000 Some minor cleaning up. commit 2823a010cde7d2766f3851d00c84e033258df96d Merge: 0f0ce7a98 ad4c9a8ac Author: Alan Garny '' Date: Fri Jul 13 11:06:50 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit ad4c9a8ac784d6f75b835c2a724796e35dc8ab2b Merge: 0f957f7d8 db2922176 Author: Alan Garny '' Date: Fri Jul 13 11:05:29 2018 +0100 Improved support for new files. commit db2922176cb4745b7855b6ebe95aa61d96357de0 Author: Alan Garny '' Date: Fri Jul 13 10:50:26 2018 +0100 Central widget: provide a better message for views that 'don'\''t' support new files. commit a920ea9c95c040dd9b5f0e6fdb3b55231dfe6e02 Author: Alan Garny '' Date: Fri Jul 13 10:46:14 2018 +0100 Simulation Experiment view: specifically 'don'\''t' support new files. commit 7255d5a4c6fb81ca925b8972a3e81604f63ff652 Author: Alan Garny '' Date: Fri Jul 13 10:45:29 2018 +0100 CellML Annotation view: specifically 'don'\''t' support new files. commit 95e289e295aecf1402261bc3e5f5affcc7044b62 Author: Alan Garny '' Date: Fri Jul 13 10:26:14 2018 +0100 Some minor cleaning up. commit 0f0ce7a98cb375018560ce042f391716cf60fe22 Merge: 41cbd2093 0f957f7d8 Author: Alan Garny '' Date: Thu Jul 12 15:52:55 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 0f957f7d892a881df02137cb11be9a5eb8ff7342 Merge: e9733f660 94041d9a5 Author: Alan Garny '' Date: Thu Jul 12 15:51:34 2018 +0100 Text-based views: support new '(i.e.' 'empty)' files. commit 94041d9a505af9f4be1c89781222a85abd34b083 Author: Alan Garny '' Date: Thu Jul 12 15:33:26 2018 +0100 Text-based views: support new '(i.e.' 'empty)' files. commit 41cbd2093fd6782cf1d980b6bf9d324a0c1df248 Merge: 464555e75 e9733f660 Author: Alan Garny '' Date: Wed Jul 11 17:43:20 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit e9733f66030a388a9238fac25c43a2e85acb3f63 Merge: 61cd92cbe 52ef9b800 Author: Alan Garny '' Date: Wed Jul 11 17:40:45 2018 +0100 libgit2: upgraded to version 0.27.3 '(closes' '#1736).' commit 52ef9b80057dacbd39f185eb3902d636bf1b38b0 Author: Alan Garny '' Date: Wed Jul 11 16:06:38 2018 +0100 Slight update to our downloads page '(#1736).' commit c157610fb2657ba43599d63f18cd4c3634c60769 Author: Alan Garny '' Date: Wed Jul 11 16:06:15 2018 +0100 'Don'\''t' only build the libgit2 package '(#1736).' commit 67ec05e512eedfae5428967ed84a12530bd6908a Author: Alan Garny '' Date: Wed Jul 11 16:05:52 2018 +0100 libgit2 package: binaries for version 0.27.3 '(#1736).' commit 67b7c9eac6f524d74e8271730ab933abdfc6bc5a Author: Alan Garny '' Date: Wed Jul 11 15:57:04 2018 +0100 Some minor cleaning up. commit 200f6f5d0635752c99846f9778e8bb787e07a74a Author: Alan Garny '' Date: Wed Jul 11 15:52:20 2018 +0100 Only build the libgit2 package '(#1736).' commit f9edbede708610bb69f7ad48515185ecdea80111 Author: Alan Garny '' Date: Wed Jul 11 15:51:36 2018 +0100 libgit2: upgraded to version 0.27.3 '(#1736).' commit 464555e7557d4391467f20fc49385b7df7f9159f Merge: a6d8c42af 61cd92cbe Author: Alan Garny '' Date: Wed Jul 11 10:52:24 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 61cd92cbe0c5b70aea9e56baf87fc6a158ba8747 Merge: 4198e53cc e994a3587 Author: Alan Garny '' Date: Wed Jul 11 10:51:27 2018 +0100 Editor widget: make sure that people know whether we can find/replace. commit e994a3587a419e3492f7cf44c423ddd06ca667ba Author: Alan Garny '' Date: Wed Jul 11 10:37:29 2018 +0100 Editor widget: make sure that people know whether we can find/replace. My bad, I cleaned up some code and remove something that I should clearly not have been 'removed!' commit a6d8c42af269330bfc2753cb88e3f999b46351d2 Merge: 9644f0651 4198e53cc Author: Alan Garny '' Date: Sun Jul 8 12:28:37 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 4198e53cc36695052f6cb8e53b1400fda91a52e3 Merge: 0984550f0 2587c19b0 Author: Alan Garny '' Date: Sun Jul 8 12:27:11 2018 +0100 libgit2: upgraded to version 0.27.2 '(closes' '#1732).' commit 2587c19b037ed430f939510e1e747fbebb21c18e Author: Alan Garny '' Date: Sun Jul 8 12:09:07 2018 +0100 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit b3883a285300c582259c96076bc4018bc022219b Author: Alan Garny '' Date: Sun Jul 8 11:54:06 2018 +0100 'Don'\''t' only build the libgit2 plugin '(#1732).' commit 7b8903123dbbe7d31a2329a1a29087d1b0dd6ba4 Author: Alan Garny '' Date: Sun Jul 8 11:52:33 2018 +0100 libgit2 plugin: binaries for version 0.27.2 '(#1732).' commit 58d19ec9af21585a2bc744fd24846d3d53e52936 Author: Alan Garny '' Date: Sat Jul 7 16:30:33 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit cd916ac3dc91f151f5ed06ec0f684fd863dcac1b Author: Alan Garny '' Date: Sat Jul 7 11:36:21 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit 8f7275df297ea4e807b62eb8ad7c72e891e56661 Author: Alan Garny '' Date: Sat Jul 7 10:32:57 2018 +0200 libgit2 plugin: binaries for version 0.27.2 '(#1732).' commit 0855b0983cc65e4eb5d5636016a97c5506221ac2 Author: Alan Garny '' Date: Sat Jul 7 10:20:36 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit fb4c866848fe7d9c7662e62403c6ae389382bbaf Author: Alan Garny '' Date: Sat Jul 7 10:06:33 2018 +0200 Slight update to our downloads page '(#1732).' commit 661cfed8cff64d669cfee639c076f237aa2f04b6 Author: Alan Garny '' Date: Sat Jul 7 10:06:07 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit 891851d2c60e35389bc2e5de320be2036cd0383e Author: Alan Garny '' Date: Sat Jul 7 09:52:02 2018 +0200 Only build the libgit2 plugin '(#1732).' commit 1b4f7b62188081bcdf38cdca0f9d96eddd89fe6e Author: Alan Garny '' Date: Sat Jul 7 09:50:33 2018 +0200 Only build the libgit2 plugin '(#1732).' commit 3c936c3f9d623f328fadc5ffa7252a6ff813d375 Author: Alan Garny '' Date: Sat Jul 7 09:47:26 2018 +0200 Only build the libgit2 plugin '(#1732).' commit 2d11b9c765a1dea3216eb8cf5aadab62cf043314 Author: Alan Garny '' Date: Sat Jul 7 09:46:56 2018 +0200 libgit2 plugin: upgraded to version 0.27.2 '(#1732).' commit 0984550f07f5bb6deab73dd4856a47857837a018 Merge: bf27a607f 110231657 Author: Alan Garny '' Date: Sat Jul 7 09:24:32 2018 +0200 QScintilla: upgraded to version 2.10.7 '(closes' '#1731).' commit 110231657e02d5b88b2d34db05e8c34d199abef2 Author: Alan Garny '' Date: Sat Jul 7 09:10:20 2018 +0200 Slight update to our downloads page '(#1731).' commit 9ca0e39f73dbd5391c5edd1158989a18312b2253 Author: Alan Garny '' Date: Sat Jul 7 09:10:03 2018 +0200 'Don'\''t' only build our QScintilla plugin '(#1731).' commit 81ac2c8042b311587a9dd31beb239ee219ba0ba8 Author: Alan Garny '' Date: Sat Jul 7 09:09:23 2018 +0200 QScintilla package: binaries for version 2.10.7 '(#1731).' commit 306fc8124393b5c05f22f6c995a3778e6754f2b8 Author: Alan Garny '' Date: Sat Jul 7 08:56:30 2018 +0200 Only build our QScintilla plugin '(#1731).' commit db432842fa0bdb7160c1fdb15070a52a18479b7c Author: Alan Garny '' Date: Sat Jul 7 08:54:42 2018 +0200 Only build our QScintilla plugin '(#1731).' commit 09c1b296cfeb3f5adae81a02c8ee31430e0c3200 Author: Alan Garny '' Date: Sat Jul 7 08:54:13 2018 +0200 QScintilla: upgraded to version 2.10.7 '(#1731).' commit 9644f0651d140a622056b1ab7a93ddb3b56ae1a1 Merge: 2ed63ead6 bf27a607f Author: Alan Garny '' Date: Sat Jul 7 07:59:51 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit bf27a607fc6d55cd97d6d37b0ffcfd2998bc8f29 Merge: 854dfcaf6 363683a07 Author: Alan Garny '' Date: Sat Jul 7 07:58:00 2018 +0200 LLVM+Clang: upgraded to version 6.0.1 '(closes' '#1729).' commit 363683a07486c15f9f7dabee9735b2bcf488a007 Author: Alan Garny '' Date: Sat Jul 7 07:39:05 2018 +0200 Slight update to our downloads page '(#1729).' commit 74453bc3c646f8df17523db4149f400c6c5db0cf Author: Alan Garny '' Date: Sat Jul 7 07:36:51 2018 +0200 Stop building only LLVM+Clang '(#1729).' commit c7117be64441dbb3737eac32bfa431af583e2b9d Author: Alan Garny '' Date: Sat Jul 7 07:36:22 2018 +0200 LLVM+Clang package: binaries for version 6.0.1 '(#1729).' commit 113ede87ca71368d260dc015d7d76266b71d3617 Author: Alan Garny '' Date: Fri Jul 6 17:08:31 2018 +0200 Only building LLVM+Clang '(#1729).' commit 821c2d5ccb2fca51ea792d100906aa973c26f234 Author: Alan Garny '' Date: Fri Jul 6 17:07:44 2018 +0200 LLVM+Clang plugin: getting ready for LLVM+Clang 6.0.1 '(#1729).' commit 2ed63ead60322c0d2ea3884d08205a2cf21c7d70 Merge: c433ed433 854dfcaf6 Author: Alan Garny '' Date: Thu Jul 5 19:06:56 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 854dfcaf6c2c58db9902056b9091fe735d8ec6f9 Merge: 76a4a6de3 78a328c2b Author: Alan Garny '' Date: Thu Jul 5 19:05:01 2018 +0200 CellML-based views: fixed an issue that prevented some views from showing a CellML file that cannot be fully instantiated '(closes' '#1725).' commit 78a328c2b24d7d375e31bac452a63edcaa062c09 Author: Alan Garny '' Date: Thu Jul 5 18:33:57 2018 +0200 Slight update to our downloads page '(#1725).' commit 35ef0a3258adf0d2dbf62ce4c7884d9caee69dfc Author: Alan Garny '' Date: Thu Jul 5 18:22:25 2018 +0200 CellML Annotation view: some minor cleaning up. commit 9bdfb941363db7e2ec66044f351c55b072a8d9c3 Author: Alan Garny '' Date: Thu Jul 5 18:19:32 2018 +0200 Some minor cleaning up. commit 50638206b5902d895088dabc3910d1f2591c44f0 Author: Alan Garny '' Date: Thu Jul 5 18:18:04 2018 +0200 CellML Annotation view: no need to load a CellML file to view it. Not only that, but if the view can be used for a given file, then we will always be able to retrieve its contents, even if it cannot be fully instantiated. So, no need to check whether it has issues. commit 4ac576bf9be4e663b0ac93286e23911dbb6dfe97 Author: Alan Garny '' Date: Thu Jul 5 17:27:52 2018 +0200 CellML support: improved our 'fileVersion()' method '(#1725).' commit 0c6f482177b143cb2073e355f4e32d07cc6fcee6 Merge: 2f531c353 76a4a6de3 Author: Alan Garny '' Date: Thu Jul 5 14:53:02 2018 +0200 Merge branch ''\''master'\''' into issue1725. commit c433ed4339a430df907ca8c13fff69b7f93ab165 Merge: f6910a2cb 76a4a6de3 Author: Alan Garny '' Date: Thu Jul 5 14:52:33 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 76a4a6de3588500c13c6bc970fc505b7ad621b84 Merge: c9bbf96d6 10e634349 Author: Alan Garny '' Date: Thu Jul 5 14:51:01 2018 +0200 Some minor cleaning up. commit 10e6343496d3389e9133c4e26ad4c86243927e76 Author: Alan Garny '' Date: Thu Jul 5 14:36:57 2018 +0200 Some minor cleaning up. commit 2f531c353a34137ed4f1d0fcd7af718b7bf458ad Author: Alan Garny '' Date: Thu Jul 5 11:57:20 2018 +0200 Some minor cleaning up. commit 39bb9a1104a2d34b393a6cf7207ae3b79c3a4a44 Author: Alan Garny '' Date: Thu Jul 5 11:53:55 2018 +0200 CellML support: use native file names in error messages. commit f6910a2cba0549afb65b8e0d05773b242225dbdb Author: Alan Garny '' Date: Thu Jul 5 10:06:47 2018 +0200 Help window: build the plugin only once the Qt help has been generated '(#1544).' Indeed, before adding that dependency, and after having $'\342\200\234cleaned\342\200\235' the project, we had to build it twice to get the Qt help right. '(After' the first build, the Help window would display a message about qthelp://opencor/doc/user/index.html not being 'found.)' commit 7a8e705fd19da0e72c0650a52509a98a447188d9 Author: Alan Garny '' Date: Thu Jul 5 09:57:08 2018 +0200 Some minor cleaning up. commit 0e3af57b116a34d0e541216979290edc9f290da7 Author: Alan Garny '' Date: Thu Jul 5 09:41:53 2018 +0200 Some minor cleaning up. commit e1962460462ba7e44cd2b154625b09703d0b098f Author: Alan Garny '' Date: Thu Jul 5 09:35:25 2018 +0200 Some minor cleaning up. commit f0c56d2e1fe613783b6e7eb54cec1aa37ac1e89b Author: Alan Garny '' Date: Thu Jul 5 08:57:01 2018 +0200 Some minor cleaning up. commit 4eb3bf8de65e28243a9bbeb89d09b4669410d049 Author: Alan Garny '' Date: Thu Jul 5 08:44:27 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 4f66cb9110182e40aa36bba233c271a66353fb05 Merge: 48502358e c9bbf96d6 Author: Alan Garny '' Date: Thu Jul 5 08:42:25 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit c9bbf96d62eed897ef1b7783d7d2a4e683bcddf6 Merge: 3b5d83a94 0ad7a2df8 Author: Alan Garny '' Date: Thu Jul 5 08:41:28 2018 +0200 Some minor cleaning up. commit 0ad7a2df8845c8ae41e57a9369bbe94de9342701 Author: Alan Garny '' Date: Thu Jul 5 08:12:56 2018 +0200 Some minor cleaning up. commit 48502358ed6b5916788a854f2ec00edb6e45e823 Merge: e90218519 3b5d83a94 Author: Alan Garny '' Date: Wed Jul 4 23:21:55 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 3b5d83a94f21f9aa7ddd2a28c29ffbf6225c4d87 Merge: f5b8c268b edd57d0c4 Author: Alan Garny '' Date: Wed Jul 4 23:20:58 2018 +0200 Some minor cleaning up. commit edd57d0c401736e7071c8b8e44f66c4a98a1b2ac Author: Alan Garny '' Date: Wed Jul 4 23:06:12 2018 +0200 Some minor cleaning up. commit e90218519b30d8f64da2296cbabdd62ef8c19b9f Merge: 8c1839f9f f5b8c268b Author: Alan Garny '' Date: Wed Jul 4 22:55:04 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit f5b8c268bf60b73f3c1ded76860930f349c7b5ce Merge: 822c8fe29 5eab9a167 Author: Alan Garny '' Date: Wed Jul 4 22:52:08 2018 +0200 Cleaning up. commit 5eab9a1674d8c6d7c9b356626ed99b57b615277b Author: Alan Garny '' Date: Wed Jul 4 22:33:31 2018 +0200 Editor widget: the clearing of our find/replace field can be done for us. commit e5bd80d7612d19eb58722b3bac1f2bfd50986120 Author: Alan Garny '' Date: Wed Jul 4 22:28:09 2018 +0200 Some minor cleaning up. commit 785d1868fa5a263bbf17df1cfa57ccf5332a1c7f Author: Alan Garny '' Date: Wed Jul 4 22:27:51 2018 +0200 Some minor cleaning up. commit ae1514e234a16845fad9dd2cad3e4c69ed94f828 Author: Alan Garny '' Date: Wed Jul 4 22:18:18 2018 +0200 Some minor cleaning up. commit 8c1839f9f02740737662638fd04ad862bd2ef94a Author: Alan Garny '' Date: Wed Jul 4 22:10:37 2018 +0200 Can now show the user-generated documentation within OpenCOR '(#1544).' $'\342\200\246' or a red-themed error page, if a given page cannot be found. commit 4606089462bfdb364aa72f0872da4aaffdd06db1 Author: Alan Garny '' Date: Wed Jul 4 21:10:52 2018 +0200 Help window: silently generate the Qt help after the user/developer help has been generated '(#1544).' commit 11be84f56e076407cf51a748ad00b543d508ef1f Author: Alan Garny '' Date: Wed Jul 4 20:58:14 2018 +0200 Help window: generate the Qt help after the user/developer help has been generated '(#1544).' commit 4ee896d2686af8aef6b03f6f209611aa00e8f743 Author: Alan Garny '' Date: Wed Jul 4 20:55:54 2018 +0200 Some minor cleaning up. commit f8185459740f2095cc72a6eeb577656fa37a4376 Author: Alan Garny '' Date: Wed Jul 4 20:32:22 2018 +0200 Slight improvement to our clcachewrapper program. commit 1c811b251796f42ec55537d8a12cb46e6288fe1f Author: Alan Garny '' Date: Wed Jul 4 17:57:23 2018 +0200 Some minor cleaning up. commit e419c35888524f2842c4f14750b6b81fb151ead8 Author: Alan Garny '' Date: Wed Jul 4 17:50:21 2018 +0200 Some minor cleaning up. commit 1b29acc63f8d6cf98b824c7ce1b114cb0e48bf19 Author: Alan Garny '' Date: Wed Jul 4 17:14:59 2018 +0200 Some minor cleaning up. commit 0944fe5456ef7cad668d9441e28ea81eefe4b11e Author: Alan Garny '' Date: Wed Jul 4 16:53:32 2018 +0200 CSS for our team page '(#1544).' commit 618602773432c691e25c6897bbe77dbcd3c384ab Author: Alan Garny '' Date: Wed Jul 4 16:49:42 2018 +0200 Some minor cleaning up. commit f151bcc775120309425767c954ca50071601fc1f Author: Alan Garny '' Date: Wed Jul 4 16:33:45 2018 +0200 Some minor reorganising '(#1544).' commit 38fc638c724822d1ba07884b1253e119f7f58266 Author: Alan Garny '' Date: Wed Jul 4 16:23:21 2018 +0200 Some minor cleaning up. commit c74a1485f9969ca93a6248a6564feb1304acff62 Author: Alan Garny '' Date: Wed Jul 4 16:16:19 2018 +0200 Renamed a few CSS classes '(#1544).' commit 588727024249c7a39dc66381140634290bd3f122 Author: Alan Garny '' Date: Wed Jul 4 16:15:55 2018 +0200 Some minor cleaning up. commit bbdde223dd439ff947ce2ebc72533b2929d4df74 Author: Alan Garny '' Date: Wed Jul 4 15:43:37 2018 +0200 Some minor rearranging. commit 5a4133e96087bd783698b37495cbca16d69dbe7f Author: Alan Garny '' Date: Wed Jul 4 14:14:08 2018 +0200 Make sure that our documentation is built once the Sphinx script has been patched '(#1544).' commit 8c393259d7d6822c76121a158643c534827cab5a Author: Alan Garny '' Date: Wed Jul 4 13:44:39 2018 +0200 Some minor cleaning up '(#1544).' commit 0c179f5673a45ee281624b3f489537d4c71f0f83 Merge: d8a9d5710 822c8fe29 Author: Alan Garny '' Date: Wed Jul 4 13:41:47 2018 +0200 Merge remote-tracking branch ''\''opencor/master'\''' into issue1544 commit 822c8fe29b584590c84f5395cb6cfaff9f629538 Merge: ddbf00b1c d1633bb20 Author: Alan Garny '' Date: Wed Jul 4 13:41:04 2018 +0200 Some minor cleaning up. commit d1633bb2073aac8fcaefcea553489c76aac23c12 Author: Alan Garny '' Date: Wed Jul 4 13:25:08 2018 +0200 Some minor cleaning up. commit d8a9d571071f7f9a8035938636930d46faf3b1b9 Merge: 36c40bdd4 ddbf00b1c Author: Alan Garny '' Date: Wed Jul 4 10:56:49 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit ddbf00b1c90b08725e97ec597ef37693f8a22c57 Merge: cae839669 9d83c435b Author: Alan Garny '' Date: Wed Jul 4 10:55:46 2018 +0200 Windows: fixed our VBScript file. commit 9d83c435b896c6ce5fdc904fd20ac31d89f93350 Author: Alan Garny '' Date: Wed Jul 4 10:25:24 2018 +0200 Windows: fixed our VBScript file. commit 36c40bdd438ddae49f0275c1f0515fe03339665c Merge: b60e7268a cae839669 Author: Alan Garny '' Date: Wed Jul 4 09:35:05 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit cae839669e51cf3120dbc048c6270546b9b22519 Merge: 8be1d28f6 c9eb5e19f Author: Alan Garny '' Date: Wed Jul 4 09:33:24 2018 +0200 Simulation Experiment view: fixed some issues with manually added graphs and graphs associated with another file '(closes' '#1716).' commit c9eb5e19fe13e1b1c8fd72b74bdf6550c462fcf7 Author: Alan Garny '' Date: Wed Jul 4 09:17:59 2018 +0200 Slight update to our downloads page '(#1716).' commit 71eef2df00a2f8a8486756b5faccdb1edc67527a Author: Alan Garny '' Date: Wed Jul 4 09:15:31 2018 +0200 Simulation Experiment view: properly handle the Model value of a given graph '(#1716).' commit ba8f4ef2fc0fbffbc81621caa643b5bb17bf6854 Author: David Brooks '' Date: Wed Jul 4 14:33:36 2018 +1200 Python: fixes from merging master in commit a6063de. commit a90a36675e29eaa30b0abab34284254ba36201a6 Author: Alan Garny '' Date: Tue Jul 3 18:06:36 2018 +0200 Simulation Experiment view: update the 'legend'\''s' width if we change a 'graph'\''s' symbol '(#1716).' commit f73fd84ff1657280926b6a36c15223dd5f9d84fc Author: Alan Garny '' Date: Tue Jul 3 15:23:30 2018 +0200 Simulation Experiment view: automatically update the title of a graph, if it is/was empty and it has a new Y value '(#1716).' commit 165e2fce879a539f58faced99c7427ecd5ca9ae8 Author: Alan Garny '' Date: Tue Jul 3 14:54:45 2018 +0200 Simulation Experiment view: automatically update the title of a graph, if it is/was empty and it has a new Y value '(#1716).' commit dc3121ef6f4ccda8b26e087a9ff6fc255744af14 Author: Alan Garny '' Date: Tue Jul 3 13:47:40 2018 +0200 Some minor cleaning up. commit bfc6ab495b882ac4475732ac069a0b7b689a0de5 Author: Alan Garny '' Date: Tue Jul 3 13:47:24 2018 +0200 Simulation Experiment view: cycle through colours when manually adding a graph '(#1716).' commit 41627fa14a8a20b9e53f44bf903e05b80f70d0c9 Author: Alan Garny '' Date: Tue Jul 3 11:38:37 2018 +0200 Some minor cleaning up. commit b60e7268a6bc230edc67528310d54c84b8b120f6 Author: Alan Garny '' Date: Tue Jul 3 08:37:02 2018 +0200 Documentation: prevent a warning about a .rst file not being used '(#1544).' Indeed, this is a README.rst file, so just for our own record and not meant to be used to generate the documentation. commit 306ac2c6576f49be064ab9d662fbb3c165d40939 Merge: 5b82409f5 8be1d28f6 Author: Alan Garny '' Date: Tue Jul 3 08:22:13 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 8be1d28f64803efaf39576965ab0db1800291a32 Merge: c117da854 4d54062d9 Author: Alan Garny '' Date: Tue Jul 3 08:19:50 2018 +0200 Some minor cleaning up. commit 4d54062d9f4541ff53c1af15a2f2e153b49b4f3a Author: Alan Garny '' Date: Tue Jul 3 08:04:58 2018 +0200 Some minor cleaning up. commit c117da854ab8cc23c87547fdc4caaea04749b0e4 Merge: 124330846 8f35939c1 Author: Alan Garny '' Date: Tue Jul 3 07:53:06 2018 +0200 Python: make sure the path to our Python is updated in scripts. commit 8f35939c1edd3a03dd75b58b75710cf4a65040cd Author: David Brooks '' Date: Tue Jul 3 17:18:15 2018 +1200 Python: new pre-compiled packages for Windows with DLLs also in '`./bin`.' commit 03fe407be19f4ec0963c23551bd91fffa4848c5b Author: David Brooks '' Date: Tue Jul 3 14:12:41 2018 +1200 Python: make sure script is copied when CMake is run. commit 73481341579c18e2aee12f0fd449cc56d77e736b Author: David Brooks '' Date: Tue Jul 3 13:41:48 2018 +1200 Python: copy the '`set_python_path`' script during the Python 'plugin'\''s' build, before any dependent plugins try to run it. commit 05da2b572999769c57e5020f8d3bb662063d5a1a Author: David Brooks '' Date: Tue Jul 3 13:41:23 2018 +1200 Python: copy the '`set_python_path`' script during the Python 'plugin'\''s' build, before any dependent plugins try to run it. commit a6063de31ff28e01b4544ff3299a97ea85efba8e Merge: 024d79da8 124330846 Author: David Brooks '' Date: Tue Jul 3 13:00:05 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 024917384be8b897dfde04906837080a340d4bca Author: David Brooks '' Date: Tue Jul 3 12:57:45 2018 +1200 Python: make sure the path to our Python is updated in scripts. commit 024d79da8011e4651d97d8ff83e64575ca5ebe12 Author: David Brooks '' Date: Tue Jul 3 12:52:02 2018 +1200 Python: get '`--update-path`' option working in '`set_python_path.py`.' commit 5b82409f58116ebd04e47d33bab911b190ac7146 Author: Alan Garny '' Date: Mon Jul 2 22:04:49 2018 +0200 Make sure that we refer to our local copy of the user/developer documentation '(#1544).' commit 8b6f38fca5c288aa608734be04a10c02ed70e1b0 Author: Alan Garny '' Date: Mon Jul 2 22:02:30 2018 +0200 Copy our '"base"' documentation to the build directory '(#1544).' commit ea8cef10392b005b2005b7e326568c36e5cedcbf Author: Alan Garny '' Date: Mon Jul 2 22:01:26 2018 +0200 Make sure that we refer to our local copy of the user/developer documentation '(#1544).' commit d402749c23b9a725b73aed65f305f36e4f2cf0af Author: Alan Garny '' Date: Mon Jul 2 19:04:27 2018 +0200 Build both the user and developer documentations '(#1544).' commit 8949c6f24321fc6866a37f6aeebe88b188ce182c Author: Alan Garny '' Date: Mon Jul 2 15:08:23 2018 +0200 Add '(and' build, in 'theory)' the user and developer documentations '(#1544).' commit 642d36e52590d7ed570d7f925f4a5aba5a50093b Author: Alan Garny '' Date: Mon Jul 2 14:49:13 2018 +0200 CMake: require at least CMake 3.11 '(#1544).' Needed for the '`FetchContent`' module. commit 44ca4ae071ecd4a69bbb1248ef3e16c318f9ed0d Author: Alan Garny '' Date: Mon Jul 2 14:29:45 2018 +0200 Revert '"Get' '`cleanll[.bat]`' to remove '`doc/developer`' and '`doc/user`' '(#1544)."' This reverts commit 37092d57cddfb8c7dd071f1818a1524ee8c11e12. commit db5a1fd67827f91ada63996208bbd2504a994152 Author: Alan Garny '' Date: Mon Jul 2 14:29:39 2018 +0200 Revert '"Get' '`cleanll[.bat]`' to remove '`doc/developer`' and '`doc/user`' '(#1544)."' This reverts commit ef742763675aaea4fdf9d08c13df94bc0e5f0d00. commit ef742763675aaea4fdf9d08c13df94bc0e5f0d00 Author: Alan Garny '' Date: Mon Jul 2 13:51:27 2018 +0200 Get '`cleanll[.bat]`' to remove '`doc/developer`' and '`doc/user`' '(#1544).' commit 37092d57cddfb8c7dd071f1818a1524ee8c11e12 Author: Alan Garny '' Date: Mon Jul 2 13:38:03 2018 +0200 Get '`cleanll[.bat]`' to remove '`doc/developer`' and '`doc/user`' '(#1544).' commit 07fd5ba88e00c3a3a244f2386809424c17eb2831 Author: Alan Garny '' Date: Mon Jul 2 10:46:09 2018 +0200 Removed our documentation submodules '(#1544).' commit 67098034314b92e6e2648a9ed41cf0c532f6a092 Author: Alan Garny '' Date: Mon Jul 2 10:45:33 2018 +0200 Removed our documentation submodules '(#1544).' commit 02f2cbbc183c7705879f88baad19bff40f575092 Merge: 3fe7fd1da 124330846 Author: Alan Garny '' Date: Mon Jul 2 10:25:27 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 12433084648345082bfc9db060b4112665814115 Author: Alan Garny '' Date: Mon Jul 2 10:23:43 2018 +0200 Some minor cleaning up. commit 3fe7fd1daa5fffaaa760cd29abced8380361c28c Merge: 0534805d8 73f5c95e3 Author: Alan Garny '' Date: Sat Jun 30 18:57:27 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 73f5c95e31f14d2599e7f2c1c5dc59b071baedaf Merge: dfd7fe0c7 d912e4805 Author: Alan Garny '' Date: Sat Jun 30 18:55:44 2018 +0200 Cleaning up. commit d912e48055d19f5984169e37af4c966264a037e6 Author: Alan Garny '' Date: Sat Jun 30 18:05:56 2018 +0200 Some minor cleaning up. commit 6618cb7ed43101d95f9586f4490d776d908a2e06 Author: Alan Garny '' Date: Sat Jun 30 15:59:35 2018 +0200 Some minor cleaning up. commit 63f3c0817af1262c53515402590cdbdac3f6a341 Author: Alan Garny '' Date: Sat Jun 30 15:35:03 2018 +0200 Some minor cleaning up. commit 06f4fe131eafa52e70dbd3a841a0d321d1a83173 Author: Alan Garny '' Date: Sat Jun 30 15:33:56 2018 +0200 Some minor cleaning up. commit d73e6a308b1ceca3be86c5166c8fb0bade7c19bd Author: Alan Garny '' Date: Sat Jun 30 15:00:02 2018 +0200 CellML support: reworked '`CellmlFile::fileVersion()`.' The idea is that if the given file is managed, then we directly return its CellML version while, if $'it\342\200\231s' not managed, we try to load it and return its version. commit b4a8896ff69241832aba7e84097ef1762b7216cf Author: Alan Garny '' Date: Sat Jun 30 14:44:10 2018 +0200 Some minor cleaning up. commit 2f1ccadffd135f9e20bace415b84bf610c921351 Author: Alan Garny '' Date: Sat Jun 30 14:00:56 2018 +0200 Some minor cleaning up. commit 745ea6aa0d977305c3778ddfc6bca10783de18a5 Author: Alan Garny '' Date: Sat Jun 30 14:00:39 2018 +0200 Some minor cleaning up. commit f28b8acad5ae2973bff964f4ac933cdf4ccb0842 Author: Alan Garny '' Date: Sat Jun 30 13:45:00 2018 +0200 Some minor cleaning up. commit e067d6d0616ebef65e1d0223cac26237711b5921 Author: Alan Garny '' Date: Sat Jun 30 13:34:27 2018 +0200 Some minor cleaning up. commit 194474f28699d111b1b1dc0fd232d94d0e5e2884 Author: Alan Garny '' Date: Sat Jun 30 10:24:20 2018 +0200 Replaced '`readFileContentsFromFile()`' and '`readFileContentsFromURL()`' with '`readFile()`.' commit e68ebce4edd62a9bce2169aaeb9f0814f1ebee07 Author: Alan Garny '' Date: Sat Jun 30 10:20:22 2018 +0200 Core CLI: some minor reorganisation of code. commit 94d48989d1e772dc3ee11f5983619e938a390b60 Author: Alan Garny '' Date: Sat Jun 30 10:15:50 2018 +0200 Core CLI: some minor reorganisation of code. commit 324a96d20c1ab01e951d9393dd79570153d4a8b3 Author: Alan Garny '' Date: Sat Jun 30 10:12:26 2018 +0200 PMR Workspaces window: make sure that we are dealing with a CellML 1.0/1.1 file. commit be36451512176f4b404fe2bde4e94279c8dad4f9 Author: Alan Garny '' Date: Sat Jun 30 08:57:51 2018 +0200 Replaced '`readFileContentsFromUrlWithBusyWidget()`' with '`readFileWithBusyWidget()`.' commit bb806624f7aa56e91c8f0f45db2e382023e6ae99 Author: Alan Garny '' Date: Fri Jun 29 23:17:21 2018 +0200 Replaced '`writeFileContentsToFile()`' with '`writeFile()`.' commit dfd7fe0c78ea0a79561172d92bcf07c6184b10d7 Merge: b38242cbc 93112937f Author: Alan Garny '' Date: Fri Jun 29 22:58:44 2018 +0200 CellML/SED-ML Editing views: disable the tools if the current file 'doesn'\''t' have an editor. commit 93112937f5d98860c1a5f8615f0f46feec63a98b Author: Alan Garny '' Date: Fri Jun 29 22:39:29 2018 +0200 CellML/SED-ML Editing views: disable the tools if the current file 'doesn'\''t' have an editor. commit b38242cbc8b3a78405db73cf034781ce049ed2de Merge: fa9d85958 f1061b7c9 Author: Alan Garny '' Date: Fri Jun 29 22:33:24 2018 +0200 Make sure that some views only deal with CellML 1.0/1.1 files. commit f1061b7c986627b3d351bbf324c4ef7a8de00831 Author: Alan Garny '' Date: Fri Jun 29 18:12:22 2018 +0200 Simulation Experiment view: make sure that we are dealing with a CellML 1.0/1.1 file. commit a3cdf7de3dfc2fb7a90a19297aa5946386999a11 Author: Alan Garny '' Date: Fri Jun 29 18:11:57 2018 +0200 Raw CellML view: make sure that we are dealing with a CellML 1.0/1.1 file. commit 82ef1e5f25c8149271d4f7cad6fe02eb0bd9f7e2 Author: Alan Garny '' Date: Fri Jun 29 18:11:41 2018 +0200 CellML Annotation view: make sure that we are dealing with a CellML 1.0/1.1 file. commit 0534805d822099394169e8cc64d207985470ffc2 Merge: cc2fbd7fc fa9d85958 Author: Alan Garny '' Date: Fri Jun 29 14:32:09 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit fa9d859582966d0385b9381816773518d88cf83d Merge: c8ed1ed53 7203acd4c Author: Alan Garny '' Date: Fri Jun 29 14:23:42 2018 +0200 Solvers: reference CVODE rather than CVODES '(closes' '#1711).' The Windows build failed due to '`clcache`' crashing. The build was then manually restarted and it passed '(see' 'http://autotest.bioeng.auckland.ac.nz/jenkins/job/OpenCOR_Windows/398/).' commit 7203acd4cf1ee4e3bc820a7e22250790d0be8ed8 Author: Alan Garny '' Date: Fri Jun 29 13:29:47 2018 +0200 Slight updates to our downloads pages '(#1711).' commit 6375ad1da20967acebe3d7a0c8fe49f995812683 Author: Alan Garny '' Date: Fri Jun 29 13:25:46 2018 +0200 Solvers: reference CVODE rather than CVODES '(#1711).' commit cc2fbd7fce8f05775acf7475fb86e577ca009ad5 Merge: 85a4f1809 c8ed1ed53 Author: Alan Garny '' Date: Wed Jun 27 20:28:51 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit c8ed1ed53b2d9109875db9b2227190e1c81b5f3f Author: Alan Garny '' Date: Wed Jun 27 20:27:55 2018 +0200 Some minor cleaning up. commit 85a4f180926d05e362a46d4c9da3aabf7465cd22 Merge: ab8c6d42d 052b242b2 Author: Alan Garny '' Date: Wed Jun 27 18:20:29 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 052b242b2d8aead3e47d33b85848deaca93a21f1 Author: Alan Garny '' Date: Wed Jun 27 18:12:02 2018 +0200 Some minor cleaning up. commit 25c0759e34b138467fffac4ce9217207ed135ceb Merge: 1816234c5 bb54af227 Author: Alan Garny '' Date: Wed Jun 27 16:06:32 2018 +0200 New snapshot. commit bb54af2276b4fa0afe25a7d8e4240c6170093b16 Author: Alan Garny '' Date: Wed Jun 27 15:51:54 2018 +0200 New snapshot. commit ab8c6d42d0c2c23f0230e96741b9d3182faedb08 Author: Alan Garny '' Date: Wed Jun 27 15:21:13 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 1816234c5936a75f92a0c652baf2fb5268194a20 Merge: aa6d0933c 980a83684 Author: Alan Garny '' Date: Wed Jun 27 15:17:40 2018 +0200 2018-06-15 snapshot: fixed a regression issue with the wrong view being potentially shown when switching between files in different modes/views '(closes' '#1699).' commit 980a83684c62a3b9106f82143f1bbeb2323bf522 Author: Alan Garny '' Date: Wed Jun 27 15:00:36 2018 +0200 Slight update to our downloads page '(#1699).' commit c2287c227f610077c5ed61a2a9d2cc07a731be5c Author: Alan Garny '' Date: Wed Jun 27 14:58:37 2018 +0200 2018-06-15 snapshot: fixed a regression issue with the wrong view being potentially shown when switching between files in different modes/views '(#1699).' This effectively reverts commit d69439e, which I thought was fine, but clearly $'wasn\342\200\231t' '(see' 'https://github.com/opencor/opencor/issues/1699#issuecomment-397896523).' commit 49c9a7836ad0989d0dbe26f0877057b0b52700b2 Author: Alan Garny '' Date: Wed Jun 27 14:10:42 2018 +0200 CellML Text view: make sure that only CellML 1.0/1.1 files are accepted. commit 10d0eced146b153ffef48ef44b20fa92fdabf6ba Merge: 6cc7f088f aa6d0933c Author: Alan Garny '' Date: Wed Jun 27 10:27:19 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit aa6d0933c6edbc986577080238d1d15e70032ae2 Merge: 4a419e184 1ce54f5aa Author: Alan Garny '' Date: Wed Jun 27 10:25:59 2018 +0200 General: moved our API plugins to the third-party category and, in some cases, renamed them '(closes' '#1707).' commit 1ce54f5aa683d9263e5fad2268df80e6e1854bec Author: Alan Garny '' Date: Wed Jun 27 09:32:55 2018 +0200 Slight update to our downloads page '(#1707).' commit f4027aa72e6379aa87f090ea025a215a5f9f3e7c Author: Alan Garny '' Date: Wed Jun 27 09:26:06 2018 +0200 CellML Text view: only provide extra information upon validation when using the CellML API. commit de825526a527070d7847895ee3b1740f58bb8b1b Author: Alan Garny '' Date: Wed Jun 27 09:24:39 2018 +0200 Raw CellML view: only provide extra information upon validation when using the CellML API. commit 2f66e75065fb6fdf162f90342be7907daed3b6ba Author: Alan Garny '' Date: Wed Jun 27 09:23:32 2018 +0200 Raw CellML view: only provide extra information upon validation when using the CellML API. commit 2e7ad8fbb048923389400ec0d53d251ed3eab90c Author: Alan Garny '' Date: Wed Jun 27 09:01:39 2018 +0200 Some minor cleaning up. commit b9d7391404eca3da50ce58055964fd5040930894 Author: Alan Garny '' Date: Wed Jun 27 08:49:52 2018 +0200 Some minor cleaning up. commit 9a9f8c391eaefed95f1d7fe51f58ba54cb49b91a Author: Alan Garny '' Date: Wed Jun 27 08:40:48 2018 +0200 Got rid of the API plugin category '(#1707).' commit c0c2c2e28b7237f22169b10b51ad10dfa4235d7c Author: Alan Garny '' Date: Wed Jun 27 08:34:15 2018 +0200 libSBML and libSEDML plugins: moved them to the third-party category and renamed them '(#1707).' commit e6d16f9a0db20afea802ae37326334422449d310 Author: Alan Garny '' Date: Tue Jun 26 23:28:12 2018 +0200 libSBML, libNuML and libSEDML plugins: moved them to the third-party category and renamed them '(#1707).' commit 0c19f836f55958db9e146d20ae030d3a54b1986b Author: Alan Garny '' Date: Tue Jun 26 23:16:31 2018 +0200 libSBML, libNuML and libSEDML plugins: moved them to the third-party category and renamed them '(#1707).' commit 0122e19198cf6776129e2d6ff2f1e8db962b729f Author: Alan Garny '' Date: Tue Jun 26 22:27:53 2018 +0200 CellML API plugin: moved it to the third-party category '(#1707).' commit ad122eac9c27706d150e20fbce3fd102cfecb32d Author: Alan Garny '' Date: Tue Jun 26 22:25:57 2018 +0200 CellML API plugin: moved it to the third-party category '(#1707).' commit 6d1786d7c2479c1cc52ea0bd88af114b018b7ffa Author: Alan Garny '' Date: Tue Jun 26 22:14:22 2018 +0200 BioSignalML plugin: moving it to the third-party category '(#1707).' commit abb443d64607aeda2422c41b63623a3478b833a0 Author: Alan Garny '' Date: Tue Jun 26 22:12:11 2018 +0200 Revert '"BioSignalML' plugin: moving it to the third-party category '(#1707)."' This reverts commit 1b48f427a95b69757b248dda4fb44fbf43502009. commit 1b48f427a95b69757b248dda4fb44fbf43502009 Author: Alan Garny '' Date: Tue Jun 26 21:49:29 2018 +0200 BioSignalML plugin: moving it to the third-party category '(#1707).' commit 6cc7f088fae0fd861ea7da55e3875913687af50d Merge: bf6495aee 4a419e184 Author: Alan Garny '' Date: Tue Jun 26 16:29:27 2018 +0200 Merge branch ''\''master'\''' into issue1544. commit 4a419e184e0e417bb2a6e19308b697752cbc6c5a Merge: b8471aba1 36f598e39 Author: Alan Garny '' Date: Tue Jun 26 16:26:43 2018 +0200 Various cleaning up. commit 36f598e39f012a667404ae7037024ec8415094c5 Author: Alan Garny '' Date: Tue Jun 26 15:39:58 2018 +0200 CellML Text view: added checks for the error column in our tests. commit 45c64dba658868b9e88ff102ff652bdb73d9f220 Author: Alan Garny '' Date: Tue Jun 26 15:18:59 2018 +0200 CellML Text view: some minor cleaning up. commit ecdf5318119f68c6f73d6b9716e1b12f7f8b30f0 Author: Alan Garny '' Date: Tue Jun 26 15:17:49 2018 +0200 CellML Text view: added warning column numbers. commit bce55673a0461b02e8672daf9a991b662aa5cba0 Author: Alan Garny '' Date: Tue Jun 26 15:10:53 2018 +0200 CellML Text view: some minor rearranging of code. commit 6ae438097e495b0b9a11a5869c2c558071045012 Author: Alan Garny '' Date: Tue Jun 26 15:01:28 2018 +0200 CellML Text view: now keep track of the column of a conversion warning. commit 9728bf928c6c4873355052c3c18b8ee11b324271 Author: Alan Garny '' Date: Tue Jun 26 14:54:39 2018 +0200 CellML Text view: make sure that only CellML 1.0/1.1 files are accepted. commit e3cd5b97ee5b776c77f858392b3080d09d82b381 Author: Alan Garny '' Date: Tue Jun 26 14:52:31 2018 +0200 Simulation Experiment view: some minor cleaning up. commit 4cdbc064d6794be58bb0fe1fba97080edbc60954 Author: Alan Garny '' Date: Tue Jun 26 14:27:13 2018 +0200 CellML support: removed our '(empty)' CellML 1.1 export code. commit a6dd632585276d033d2c3fc11c5644d32e27f997 Author: Alan Garny '' Date: Tue Jun 26 14:24:29 2018 +0200 CellML support: reworked some of our code for retrieving the CellML version. commit 783853bf64d48f49839378268c6f7a1ce83bb46d Author: Alan Garny '' Date: Tue Jun 26 14:14:47 2018 +0200 CellML support: simplified our CellML export code. commit 1977cf6d299557d26780a03a868621a33f221450 Author: Alan Garny '' Date: Tue Jun 26 14:12:24 2018 +0200 CellML support: some minor cleaning up. commit 9bedaf5a0c3f8261d69c34460318f0aad747db34 Author: Alan Garny '' Date: Tue Jun 26 14:11:48 2018 +0200 CellML support: removed our '(empty)' CellML 1.1 exporter code. commit e50a1bb235a403a7eacb19348b217444d47d8948 Author: Alan Garny '' Date: Tue Jun 26 14:09:29 2018 +0200 CellML tools: slightly reorganised our tests. commit 86a1abd608705c81cac408b6058a542de8d8996b Author: Alan Garny '' Date: Tue Jun 26 14:08:18 2018 +0200 CellML tools: 'don'\''t' bother with exporting to CellML 1.1. Indeed, with CellML 2.0 coming up, we are unlikely to ever want to break a CellML 1.0 model down to several CellML 1.1 files. commit 50cf43fd0fe74f15973030ef20b6eb3702fe31a8 Author: Alan Garny '' Date: Tue Jun 26 14:07:33 2018 +0200 CellML tools: 'don'\''t' bother with exporting to CellML 1.1. Indeed, with CellML 2.0 coming up, we are unlikely to ever want to break a CellML 1.0 model down to several CellML 1.1 files. commit b8471aba10243bbce7b9d4cd34a5c76c36bd1d1d Merge: f9365e26c 52fee38c9 Author: Alan Garny '' Date: Mon Jun 25 10:07:13 2018 +0200 QScintilla: upgraded to version 2.10.6 '(closes' '#1704).' commit 52fee38c973eddff8aff10ea61ece055f421dde0 Author: Alan Garny '' Date: Mon Jun 25 09:51:28 2018 +0200 Slight update to our downloads page '(#1704).' commit 82943623ce1a1fd1fb82a7d4b04fba15d1646df2 Author: Alan Garny '' Date: Mon Jun 25 09:49:44 2018 +0200 Stop building only QScintilla '(#1704).' commit 99f08a895e72a793fc81496345ab3bdae95b19bb Author: Alan Garny '' Date: Mon Jun 25 09:49:22 2018 +0200 QScintilla: binaries for version 2.10.6 '(#1704).' commit dc103e68c2d31117b0430d2d880d46ab94fcee2b Author: Alan Garny '' Date: Mon Jun 25 09:33:14 2018 +0200 QScintilla: upgraded to version 2.10.6 '(#1704).' commit 054d40eb547a8bfae27b0e0d1276048110a66ebf Author: Alan Garny '' Date: Mon Jun 25 09:24:09 2018 +0200 Only build QScintilla '(#1704).' commit 5a073a9ea38685601b838f7f67eba5a31767dd6f Merge: 403109d67 f9365e26c Author: David Brooks '' Date: Fri Jun 22 15:22:25 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 403109d6721da6be9f0c14e482fe4ad71ac2e91f Author: David Brooks '' Date: Fri Jun 22 14:50:23 2018 +1200 Python: update notes on running Jupyter. commit af748fa45b51ad2a8e5cd271a84f7ef6bf322cfb Author: David Brooks '' Date: Fri Jun 22 14:48:26 2018 +1200 Python: add scripts to directly run a Jupyter notebook server. commit 3f920c5d01a3ed33a32aca6fb0b624fb27e5849a Author: David Brooks '' Date: Fri Jun 22 14:47:17 2018 +1200 Python: tidy scripts used to start Jupyter. commit 08d6d13f9597c733ea46c50e419d4051ca47a655 Author: David Brooks '' Date: Fri Jun 22 14:35:34 2018 +1200 Core: 'don'\''t' show a busy widget if we are not in GUI mode. commit 4bf4b06b6e1f57e82ea9b0866c7dc31c98ad29b3 Author: David Brooks '' Date: Fri Jun 22 14:34:40 2018 +1200 Core: open a remote file after downloading and creating it. commit 6a8542db79a189424c5d0ae549cdd3cba87f168c Author: David Brooks '' Date: Fri Jun 22 14:33:31 2018 +1200 Python: only load SED-ML data if we have it. commit dad2f810f6d0e51f60a2a927bdba15fd3ebc5d98 Author: David Brooks '' Date: Tue Jun 19 16:55:20 2018 +1200 Python: update pre-built packages. commit 6d2ccaa3f905132e6a793923df9827f7379ac951 Author: David Brooks '' Date: Tue Jun 19 16:54:49 2018 +1200 Python: 'don'\''t' bundle Jupyter.vbs under Windows as it is a WIP. commit fc8023038adb5652b4adac62dd38e982f7840c59 Author: David Brooks '' Date: Tue Jun 19 16:53:25 2018 +1200 Fix typos. commit 63767ec9bce8478e4c47ebc69f82fa5b825144ec Merge: 955c111f8 e280601e3 Author: David Brooks '' Date: Tue Jun 19 11:59:44 2018 +1200 Merge branch ''\''pythonplugin'\''' of git://github.com/dbrnz/opencor into pythonplugin commit 955c111f895463b839d5212dfee3a4c26f8b0f40 Author: David Brooks '' Date: Tue Jun 19 11:55:39 2018 +1200 Python: use our version of pip that creates '`*-script.py`' files for Python launchers under Windows. We also 'don'\''t' use wheel, so 'don'\''t' install it. commit 68c03b248304f38db1ac60a4780da61a1558006e Author: David Brooks '' Date: Tue Jun 19 11:52:36 2018 +1200 Python: tidy CMake code. commit 4852a345c0ec40ab6a69138fa19ac5f2d526a86a Author: David Brooks '' Date: Tue Jun 19 11:49:21 2018 +1200 Python: get Jupyter running under Windows. commit 4672d0227f6af5f97697d4a434d727b70c6558f8 Author: David Brooks '' Date: Tue Jun 19 11:46:06 2018 +1200 Python: escape backslashes when passing strings to Jupyter kernel. commit f9365e26cdb9f8e0459ae58a5efafc52a9b1dd29 Merge: 09d33f3f1 518aeff6a Author: Alan Garny '' Date: Fri Jun 15 18:09:32 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(closes' '#1696).' commit 518aeff6ad7604d8c7b8f37a3bb98298e8b7ba87 Author: Alan Garny '' Date: Fri Jun 15 16:28:18 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit c3dc323e4ecfad9d4610c315a246deec5215c80c Author: Alan Garny '' Date: Fri Jun 15 16:26:01 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit d32ff83c4a8b0a78165aaa7177fc2304683105b8 Author: Alan Garny '' Date: Fri Jun 15 16:19:10 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit c3a1e3363aece9c502fb16183643dbc29da8d21f Author: Alan Garny '' Date: Fri Jun 15 16:13:59 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit e08d503815d3c14c7285553ab7ad05db6c458f30 Author: Alan Garny '' Date: Fri Jun 15 16:07:10 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit e47a538fa38ac21a9b05647f7cab103bb46a77ca Author: Alan Garny '' Date: Fri Jun 15 16:00:24 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit 2ecd172a2850f4f07842e012bc07c15b02fb2695 Author: Alan Garny '' Date: Fri Jun 15 15:56:42 2018 +1200 Slight update to our downloads page '(#1696).' commit 6dd09a29415fa4abad9e32d73f9f58fb169f5223 Author: Alan Garny '' Date: Fri Jun 15 15:53:09 2018 +1200 Simulation Experiment view: fixed some GUI glitches '(#1696).' commit 09d33f3f1cba2692a2d0d9d294dfb3d1cbed7c14 Merge: d48fa37f4 53e9683da Author: Alan Garny '' Date: Fri Jun 15 15:44:55 2018 +1200 Simulation Experiment view: fixed an issue with the Y axis being doubled in a very specific case '(closes' '#1683).' commit 53e9683da533476e8373e5edc69c6ab947406c30 Author: Alan Garny '' Date: Fri Jun 15 15:27:15 2018 +1200 Slight update to our downloads page '(#1683).' commit e280601e3586091b99f438d385071d08fc8edc14 Author: David Brooks '' Date: Fri Jun 15 13:12:54 2018 +1200 Python: raise an exception if a simulation has an invalid runtime '(#1200).' commit 3e1362df2042f0062a4af2a01ab22728794b0f2e Author: David Brooks '' Date: Fri Jun 15 11:18:57 2018 +1200 Python: use release tags to distinguish production '(OpenCOR' '0.6)' and development pre-built packages. commit b126cf40c3dd4c143b2abc37f4dbb0a455884639 Author: David Brooks '' Date: Fri Jun 15 11:17:28 2018 +1200 Python: we do need entire contents of '`bin`' under Windows. commit d69439e6238050e2e6975372f7fe1d29ba7d5398 Author: Alan Garny '' Date: Fri Jun 15 10:14:05 2018 +1200 Central widget: some minor cleaning up. Indeed, we $'don\342\200\231t' need our 'setTabBarCurrentIndex()' method since 'CentralWidget::updateGui()' now checks whether the state in which we are and will exit straightaway if we are not idling. commit d11bceb70748d2b2ba90ce3cc012180b29898ceb Author: Alan Garny '' Date: Thu Jun 14 18:02:28 2018 +1200 Some minor cleaning up. commit 945b043e7bd2d4431056a4f6c4b1d457bc00683a Author: Alan Garny '' Date: Thu Jun 14 15:53:27 2018 +1200 Revert '"Central' widget: make sure that our views are hidden before actually showing the one we are after '(#1683)."' This reverts commit 23b6d13b07e6d01aa2e1a46b110b8a7d98779006. Indeed, we $'shouldn\342\200\231t' have to hide the views tabs first before showing the one we are after. $'It\342\200\231s' just that our Simulation Experiment view is such that one of its side effects is a GUI glitch that shows both the Editing and the Simulation views tabs for a split second when switching files, with the first one using the Simulation Experiment view and the second using, say, the CellML Text view. commit f33cf6b04412ab78a1f11043a448cf943df67721 Merge: f9350a61d b45c88de3 Author: David Brooks '' Date: Thu Jun 14 15:06:52 2018 +1200 Merge branch ''\''pythonplugin'\''' of git://github.com/dbrnz/opencor into pythonplugin commit f9350a61dd965df0037b06549fe8e0b4d163bd90 Author: David Brooks '' Date: Thu Jun 14 15:06:15 2018 +1200 Core: export CentralWidget class for Windows. commit b45c88de3b598eef7cbeb9d395ce02c2fc988202 Author: David Brooks '' Date: Thu Jun 14 14:40:52 2018 +1200 Python: update PythonPackages package for macOS and Linux. commit f55ced1573e1977fa8709e715398f50e5394905c Author: Alan Garny '' Date: Thu Jun 14 14:35:10 2018 +1200 Some minor cleaning up. commit 96ec89de4494964d9723d434da7c8fe70034c7c5 Merge: 621daddf0 d48fa37f4 Author: David Brooks '' Date: Thu Jun 14 14:04:09 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 621daddf003287ef08b6a2c8a15c6933f331cc6f Author: David Brooks '' Date: Thu Jun 14 13:49:47 2018 +1200 Python: make sure Jupyter %matplotlib uses correct backend '(see' 'jupyter/notebook#3684).' commit 23b6d13b07e6d01aa2e1a46b110b8a7d98779006 Author: Alan Garny '' Date: Thu Jun 14 11:49:56 2018 +1200 Central widget: make sure that our views are hidden before actually showing the one we are after '(#1683).' commit da23fcd2d41169236717cbc348a9a9d99c76105e Author: Alan Garny '' Date: Thu Jun 14 11:42:49 2018 +1200 Some minor cleaning up. commit 7cedf82320ca1baf22f50643d74038240041ac0a Merge: 7e74d714b d48fa37f4 Author: Alan Garny '' Date: Thu Jun 14 11:05:10 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit d48fa37f496916dcd3716dae41869780a2dde7b2 Author: Alan Garny '' Date: Thu Jun 14 11:03:55 2018 +1200 Graph Panel widget: make sure we have a 3-pixel-wide marker on macOS. commit 0ea3fcd1baa3369edb280679b495df1f851a054e Author: David Brooks '' Date: Thu Jun 14 09:04:34 2018 +1200 Python: suppress warnings about location of script files. commit 2a7b1d3dba28af1ba6fd9f980abe6e8ba8b7804e Author: David Brooks '' Date: Thu Jun 14 08:54:49 2018 +1200 Python: use our latest versions of matplotlib and IPython, making sure our patches are applied '*after*' all standard packages have been installed. commit 31500eb128712128c1d02da8567d1aa139903f2b Author: David Brooks '' Date: Wed Jun 13 20:59:21 2018 +1200 Python: make sure we use the notebook backend for matplotlib. commit c69a9aa5b7436e2a8c931c0b0d17c107be720e2f Author: David Brooks '' Date: Wed Jun 13 19:05:50 2018 +1200 Python: our '(patched)' matplotlib now determines the backend to use from 'IPython'\''s' GUI setting. commit 7e74d714ba98c809667e3ccdf38514d96f150d78 Merge: 9f7c9645e 9959f61fb Author: Alan Garny '' Date: Wed Jun 13 17:57:31 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit 9959f61fb6a004a21bbf78f1a7d3c970a5d0417e Merge: 1d8fcec69 519230053 Author: Alan Garny '' Date: Wed Jun 13 17:56:39 2018 +1200 Central widget: some work to help with the tab bar shifting when switching tabs '(#1691).' commit 519230053108d89c3a4387e58087b6f7325a72fd Author: Alan Garny '' Date: Wed Jun 13 17:39:03 2018 +1200 Reverted commit 9549fec '(#1691).' commit 26654ef0119f866f3788056f55a978aacde9aad7 Author: Alan Garny '' Date: Wed Jun 13 17:32:19 2018 +1200 Central widget: make sure the tool tip for our file tabs is correct '(#1691).' commit 9a0f8f478740a888ad87c965dab9653034fca412 Author: Alan Garny '' Date: Wed Jun 13 17:16:01 2018 +1200 Central widget: make sure the tool tip for our file tabs is correct '(#1691).' commit 9f7c9645ea6c5218de4ba0474b83551579bc47cf Merge: 1d4cd3e1a 1d8fcec69 Author: Alan Garny '' Date: Wed Jun 13 15:51:40 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit 1d8fcec69a020942f5db46637b28bdb8ec2e7ada Merge: a9c7d589f e74b172c9 Author: Alan Garny '' Date: Wed Jun 13 15:50:48 2018 +1200 Some minor cleaning up. commit e74b172c9ad2b0e6eab085d3bcd1cdbde43346fd Author: Alan Garny '' Date: Wed Jun 13 15:38:02 2018 +1200 Some minor cleaning up. commit 1d4cd3e1a43bb5a0419cb7e1840b332cc013dcac Merge: 821847a12 a9c7d589f Author: Alan Garny '' Date: Wed Jun 13 15:23:22 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit a9c7d589fbe8751a96c26f9b27c0c5859ed297a5 Merge: 282c554fe 9549fecef Author: Alan Garny '' Date: Wed Jun 13 15:21:36 2018 +1200 Central widget: fixed an issue with the tab bar shifting when switching tabs '(closes' '#1691).' commit 9549fecefdab0aa9d1b3f2e5b8b8879fee7dd28c Author: Alan Garny '' Date: Wed Jun 13 15:07:54 2018 +1200 Slight update to our downloads pages '(#1691).' commit 1693c6fe3c87c46618ae2de0f615d0c91a42ec93 Author: Alan Garny '' Date: Wed Jun 13 15:05:22 2018 +1200 Central widget: fixed an issue with the tab bar shifting when switching tabs '(#1691).' commit 95a30ab027de12cc4ca8674f74eb807dbbc4b9b3 Author: Alan Garny '' Date: Wed Jun 13 14:44:29 2018 +1200 Some minor cleaning up. No point in setting things if they $'haven\342\200\231t' changed. commit 9a9abd75517cc6bd864c0018aa4b4f513b10a93a Merge: e48720142 282c554fe Author: Alan Garny '' Date: Wed Jun 13 14:25:04 2018 +1200 Merge branch ''\''master'\''' into issue1691. commit 282c554fe0edcc78575cc68d6de86e48bd7eb410 Author: Alan Garny '' Date: Wed Jun 13 14:20:47 2018 +1200 PMR Workspaces window: properly handle the showing of our custom context menu. commit e4872014211e653fe7b164ef44a54181fc5fecb8 Author: Alan Garny '' Date: Wed Jun 13 11:43:16 2018 +1200 Some minor cleaning up. commit 821847a12b087a3b82917da6de85a34dfaccf895 Merge: 44b6ec648 450ba7609 Author: Alan Garny '' Date: Tue Jun 12 15:13:17 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit 450ba760948b76f776acbe042ac81f315371ce17 Merge: a1c1bb06a 49e07ef58 Author: Alan Garny '' Date: Tue Jun 12 15:10:20 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH '(closes' '#1688).' commit 49e07ef58069fbd7228c5d23b2446702b1629f9e Author: Alan Garny '' Date: Tue Jun 12 14:51:20 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH '(#1688).' commit 42354b7e968aae567be62056b27da4f1b7e42434 Author: Alan Garny '' Date: Tue Jun 12 14:43:49 2018 +1200 Slight update to our downloads page '(#1688).' commit 31b982abe15755510e698a8fd7f0458c009e0cc7 Author: Alan Garny '' Date: Tue Jun 12 14:21:31 2018 +1200 General: we definitely need to '(re)initialise' our plugins path even when we have already done so for the CLI version of OpenCOR '(#1688).' Not to do so will result in the plugins not being found on Linux. commit b659fa1420010e13a707fe11640f3fac273e7c98 Author: Alan Garny '' Date: Tue Jun 12 14:15:15 2018 +1200 Revert '"General:' 'don'\''t' rely on 'QCoreApplication::setLibraryPaths()' to set the plugins directory '(#1688)."' This reverts commit 9a6da2f9cb6e1c4c42e3849f87b51be7715e215b. commit 9a6da2f9cb6e1c4c42e3849f87b51be7715e215b Author: Alan Garny '' Date: Tue Jun 12 13:41:29 2018 +1200 General: 'don'\''t' rely on 'QCoreApplication::setLibraryPaths()' to set the plugins directory '(#1688).' Indeed, with Qt 5.9.6, things are now broken on 'Linux!?' So, now, we directly pass the plugins directory to our CLI application and $'GUI\342\200\231s' main window. commit b2042c2a676ac2a3181f4d82d55178e4ffc11375 Author: David Brooks '' Date: Tue Jun 12 12:59:12 2018 +1200 Linux: we need full paths to OpenCOR and Jupyter. commit b7e84f7cc4c862a5990312ad0bc6a7a8b07a259c Author: Alan Garny '' Date: Tue Jun 12 12:52:48 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH '(#1688).' commit dd22457227dbd8e20e3b5f522aaf7273c40dde8c Author: David Brooks '' Date: Tue Jun 12 12:51:43 2018 +1200 Plugins: we no longer use the EventLoopInterface so remove it. commit 9873d00d0878618902c5d008527dd0c42fef3a77 Author: Alan Garny '' Date: Tue Jun 12 11:34:38 2018 +1200 General: fixed a problem with not being able to start OpenCOR from the system PATH '(#1688).' commit ce5620cac5c57b99e580e113c501a790ac802915 Author: Alan Garny '' Date: Tue Jun 12 11:25:09 2018 +1200 Some minor cleaning up. commit 913218e5389c519b530714d2e6ac668fad4ea4a0 Author: Alan Garny '' Date: Tue Jun 12 11:03:54 2018 +1200 Some minor cleaning up. commit 50bf431350fa4a10d5848fffed3b0082ed088e84 Author: David Brooks '' Date: Tue Jun 12 10:57:25 2018 +1200 Linux: tidy script. commit 2ca6435abcbf9056c6cdcaf72b5abf550ead5474 Author: David Brooks '' Date: Tue Jun 12 10:56:50 2018 +1200 macOS: use the full path to the OpenCOR executable when running it from its script. commit 7a5ebe9e34bc428ab9dfd7e8cc3c16d0a5ca1dfd Author: David Brooks '' Date: Tue Jun 12 10:55:04 2018 +1200 Python: set the full path to OpenCOR in the Jupyter server shell, not in OpenCOR. commit bfc1f92ec061d35a68a7b26a3e193bae17dc0212 Author: David Brooks '' Date: Mon Jun 11 22:48:11 2018 +1200 Put the OpenCOR application directory at the head of the system PATH so that the Jupyter notebook server can find OpenCOR. commit f53fd08361518d608863729b1ad881510c8bc62d Author: David Brooks '' Date: Mon Jun 11 22:46:17 2018 +1200 Python: 'don'\''t' overwrite OpenCOR script with 'Jupyter'\''s...' commit 7ddff0b574923b8cdf82f496cdb7fbf8a7b32250 Merge: 676498644 d87314f4b Author: David Brooks '' Date: Mon Jun 11 21:46:49 2018 +1200 Merge branch ''\''pythonplugin'\''' of github.com:dbrnz/opencor into pythonplugin commit d87314f4b53de6829085e01ef8ca62af59c18ea1 Merge: c09a0efda a1c1bb06a Author: David Brooks '' Date: Mon Jun 11 21:44:30 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 676498644b6eee2bc0bcd1a9b6d44c807a406214 Author: David Brooks '' Date: Mon Jun 11 21:42:43 2018 +1200 Python: 'don'\''t' try to update scripts we 'can'\''t' access. commit 44b6ec64845a306ff439573a5779d898644de0ca Merge: 6d55e1327 a1c1bb06a Author: Alan Garny '' Date: Mon Jun 11 09:46:36 2018 +1200 Merge branch ''\''master'\''' into issue1683. commit a1c1bb06afe41096824ddd2e6d9a3ee80aec1846 Author: Alan Garny '' Date: Mon Jun 11 09:45:23 2018 +1200 Editing view plugin: make sure we have an editor before checking if it should handle changes. commit 6d55e132784dccd663f3aa98a8034966d999e4cd Author: Alan Garny '' Date: Sun Jun 10 16:37:38 2018 +1200 Simulation Experiment view: fixes an issue with the Y axis being doubled in a given case '(#1683).' However, we now need to fix the issue that calling 'setUpdatesEnabled()' on the current plot used to 'fix...!' commit a7dcb8d8d5d69cad6c103b2f0ebe8f41186da293 Author: Alan Garny '' Date: Sun Jun 10 15:45:14 2018 +1200 Some minor cleaning up. commit 01cc058a6b524b577e6c90b7213c9044ada26d15 Merge: 7eca9977c bd80883e6 Author: Alan Garny '' Date: Fri Jun 8 18:33:34 2018 +1200 Text-based editors: sped up our highlight/replace all method '(closes' '#1679).' commit bd80883e6459f3070304c1da6d23339b2cbe9f52 Author: Alan Garny '' Date: Fri Jun 8 18:16:59 2018 +1200 Slight update to our downloads page '(#1679).' commit 4ffcd7e96da33aae830e2665932486ddba3ea175 Author: Alan Garny '' Date: Fri Jun 8 16:19:33 2018 +1200 Some minor cleaning up '(#1679).' commit bb06046cd66265e53c82ec4394fbb83d64059904 Author: Alan Garny '' Date: Fri Jun 8 15:55:14 2018 +1200 Some minor cleaning up '(#1679).' commit fe2af3d7ea9088d0c76941937bdb571b59c55fe3 Author: Alan Garny '' Date: Fri Jun 8 15:33:34 2018 +1200 Some minor cleaning up '(#1679).' commit 03c8a3fa218da1bf0073d2412d74409156d4ffbe Author: Alan Garny '' Date: Fri Jun 8 15:29:34 2018 +1200 Some minor cleaning up '(#1679).' commit 6b89607075c058aa4b7dce01523b7c375c23cfd0 Author: Alan Garny '' Date: Fri Jun 8 15:11:09 2018 +1200 Some minor cleaning up '(#1679).' commit c09a0efda4ef03ee82bbfb3fba31fb8e05dab74c Author: David Brooks '' Date: Fri Jun 8 15:10:20 2018 +1200 Python: use lowercase name for Python root directory under Linux. commit f4fa68b0902f07b314d229ed8f317b7f61e07e0e Author: Alan Garny '' Date: Fri Jun 8 13:05:51 2018 +1200 Reverted commit 9080e11 '(#1679).' It $'wasn\342\200\231t' really $'\342\200\234simplifying\342\200\235' things on Windows since it required some additional classes to be exported. commit b93db8be8ab558f2ae0ff601e38524b1718aa730 Merge: c91252de3 0b65f7293 Author: Alan Garny '' Date: Fri Jun 8 12:52:50 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit 7eca9977c132060bd72b37040cfe18899f11add7 Merge: a47e6bb23 0b65f7293 Author: Alan Garny '' Date: Fri Jun 8 12:05:29 2018 +1200 Some minor cleaning up. commit 0b65f7293cca98d22f7cf152812ed5bdba2b388e Author: Alan Garny '' Date: Fri Jun 8 11:48:14 2018 +1200 Some minor cleaning up. commit 8e8c35da41b959a46bba78a60c561183919f4fa4 Merge: 6c8bb9608 a47e6bb23 Author: David Brooks '' Date: Fri Jun 8 11:41:02 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit c91252de3e4ba0bb53de2246a18614059eded26c Merge: 3bd905615 a47e6bb23 Author: Alan Garny '' Date: Fri Jun 8 11:37:12 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit a47e6bb23cc160e8bc436d76e4bca3d3edf722ca Merge: 5d47ea4dd ad6773eb2 Author: Alan Garny '' Date: Fri Jun 8 11:33:17 2018 +1200 Some cleaning up. commit ad6773eb2ec237bfdf02c1577e3c7f40b0bd84dc Author: Alan Garny '' Date: Fri Jun 8 09:45:28 2018 +1200 Some minor cleaning up. commit 6c8bb9608a411660069d15647e15bba37bb56d49 Author: David Brooks '' Date: Fri Jun 8 09:42:28 2018 +1200 Python: new PythonPackages package for Linux and Windows. commit d7a7219ff28f7461e8ac56eb270e3dd1312bd66f Merge: 44590abf9 5d47ea4dd Author: David Brooks '' Date: Fri Jun 8 09:41:12 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 9190bb2599904307d5aa21a58a8c7c784de02b41 Merge: 3fb0d978d 5d47ea4dd Author: Alan Garny '' Date: Fri Jun 8 09:28:18 2018 +1200 Merge branch ''\''master'\''' into cleaning-up. commit 5d47ea4dd5e07a3a97eed4af1cc7f206a9dfc536 Merge: d7a1633fc 421180eb8 Author: Alan Garny '' Date: Fri Jun 8 09:27:30 2018 +1200 Python: fixes for checking SHA of Python executable. commit 3fb0d978dc7ab221305159e397a6b6c4808005c1 Author: Alan Garny '' Date: Fri Jun 8 09:21:34 2018 +1200 Some minor cleaning up. commit d0acaec6d877af52d6c6c336e1e21513c03d4744 Author: Alan Garny '' Date: Fri Jun 8 09:20:29 2018 +1200 Some minor cleaning up. commit 129bc9f09c46230b998a8e160f2ff9cd0970eeff Author: Alan Garny '' Date: Fri Jun 8 09:20:00 2018 +1200 Some minor cleaning up. commit 364c977bdd9635218c0ebc96417b219cdb98d876 Author: Alan Garny '' Date: Fri Jun 8 09:19:34 2018 +1200 Added a type definition for QBoolSet, QIntSet and QDoubleSet. So we are in sync with our QBoolList, QIntList and QDoubleList types, and also the fact that a QSet can be useful when order is not important and we call the '`contains()`' method many times. Indeed, QList has a runtime complexity of 'O(n)' while QSet only has a runtime complexity of 'O(1).' commit 97c2c67760d48ea867d8c00e264202de8d095ed7 Author: Alan Garny '' Date: Fri Jun 8 09:15:27 2018 +1200 Some minor cleaning up. commit 421180eb8fdc16f30ff4459062331bde1327788a Author: David Brooks '' Date: Fri Jun 8 09:12:48 2018 +1200 Python: new package for Windows debug mode. commit f49f4489dcb610efbd2968b80b8f8499406f82ce Author: Alan Garny '' Date: Fri Jun 8 09:08:52 2018 +1200 Some minor cleaning up. commit acc4a386ae15b6601a9ad8562d51e8222bcc2d07 Author: David Brooks '' Date: Thu Jun 7 22:26:19 2018 +1200 Python: new packages for Linux and Windows. commit 6a0f7aef513dce808d212451666fe8c7928b2e47 Author: David Brooks '' Date: Thu Jun 7 21:51:53 2018 +1200 Python: fixes for checking SHA of Python executable. commit 44590abf9cdb082d611081e8067817c92dfbcc23 Author: David Brooks '' Date: Thu Jun 7 21:27:12 2018 +1200 Jupyter: add scripts to run Jupyter. commit c21c84dda5d79cedac07cbab771da144969c451e Author: David Brooks '' Date: Thu Jun 7 21:23:49 2018 +1200 Python: bundle Jupyter with 'OpenCOR;' new macOS Python packages package. commit de92a41ac29d7bcf5a370cd27bd6fb1f9d687eb2 Author: David Brooks '' Date: Thu Jun 7 21:18:47 2018 +1200 Python: check the SHA of the Python 'executable;' use '`./python`' '(instead' of '`./Python`)' as Linux Python 'root;' update macOS Python package. commit 3bd905615e330d1811920ca6ff627f92573b4ed7 Author: Alan Garny '' Date: Thu Jun 7 17:39:03 2018 +1200 Editor widget: speed up the highlighting even further '(#1679).' commit 961d7f64d467191813e412d1e2550a72b880f7b5 Author: Alan Garny '' Date: Thu Jun 7 17:22:41 2018 +1200 Editor widget: speed up the highlighting even further '(#1679).' commit 4349a79d5544ce89a3f76ef7d5893d378e1a5644 Merge: 32c3f770b d7a1633fc Author: Alan Garny '' Date: Thu Jun 7 16:14:17 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit d7a1633fc0744d9ea232827b3854dda1b90522e1 Author: David Brooks '' Date: Thu Jun 7 16:09:57 2018 +1200 Python: we now check the SHA of the Python executable commit 32c3f770b80f3b6abc4283814ca5c52c4589c838 Merge: 3ae82a190 2008bddac Author: Alan Garny '' Date: Thu Jun 7 16:03:00 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit 2008bddac41cdf341ae4414ca78f4a007f989e36 Author: David Brooks '' Date: Thu Jun 7 16:01:40 2018 +1200 Python: updated SHAs for macOS package commit 3ae82a190c74376b932955feade7680539fbfd47 Merge: e7d0e8ca9 771fda8a0 Author: Alan Garny '' Date: Thu Jun 7 15:57:11 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit 771fda8a0b6b0ca47a9192575928195462176410 Merge: 65f88fb4a 01a0f3d5a Author: Alan Garny '' Date: Thu Jun 7 15:55:36 2018 +1200 VBS scripts. commit 01a0f3d5ac209f80482621729e0b5b10db61b2d1 Author: Alan Garny '' Date: Thu Jun 7 15:33:49 2018 +1200 VBS scripts: make sure that they work fine with arguments. commit 4fa97c1fb0c2194ad9daeb50fdea7ff7d05dc2bb Author: David Brooks '' Date: Thu Jun 7 14:47:21 2018 +1200 Jupyter: update kernel version to match 'OpenCOR'\''s;' remove debugging. commit 9b25b379331f098e62311b6abc1417274e8bc1f7 Author: David Brooks '' Date: Thu Jun 7 14:46:27 2018 +1200 Jupyter: bundle our kernelspec with OpenCOR. commit e7d0e8ca9333eb4cdc521b9846b405d30fe65d0d Author: Alan Garny '' Date: Thu Jun 7 14:16:07 2018 +1200 Editor widget: speed up the undoing/redoing of the last action '(#1679).' commit 7f820afdb873581ecb1c53d0d97b175b277a6b51 Author: Alan Garny '' Date: Thu Jun 7 11:52:30 2018 +1200 Some minor cleaning up. commit 5c4c88f7f2dfd62cc3fa81bafaf51f83e02808da Author: David Brooks '' Date: Wed Jun 6 21:59:28 2018 +1200 Python: minor code tidy. commit 8b92e17bec518979b76e268ca988a64b5833ebfd Author: David Brooks '' Date: Wed Jun 6 21:31:10 2018 +1200 Python: reliably detect when a simulation run has finished. commit e6d06ab2e2ac35a4f7f9e15da3b1a34b37d38532 Author: Alan Garny '' Date: Wed Jun 6 19:05:53 2018 +1200 Revert '"Some' minor cleaning up '(#1679)."' This reverts commit cae0daabfc59f64298c366520e0d1dba2941bbb6. commit e8209101c67d9ca8546eb35348adea56fcfbae51 Author: Alan Garny '' Date: Wed Jun 6 18:29:28 2018 +1200 Some minor cleaning up '(#1679).' commit cae0daabfc59f64298c366520e0d1dba2941bbb6 Author: Alan Garny '' Date: Wed Jun 6 18:28:59 2018 +1200 Some minor cleaning up '(#1679).' commit 29fc50c408240219c8820d2f07679eb2f5a26ea1 Author: Alan Garny '' Date: Wed Jun 6 18:27:58 2018 +1200 Editor widget: make sure that replacing all is now fast '(#1679).' Related to commit 2d88dd5. commit 236d8062d206c0f5bb1150d3831b1e980339b45f Author: Alan Garny '' Date: Wed Jun 6 18:20:46 2018 +1200 Some minor cleaning up. commit 1da721b5d5c119e4eef30a529a3afff956f81ac7 Author: Alan Garny '' Date: Wed Jun 6 17:22:58 2018 +1200 Some minor cleaning up. commit 9080e11c0f8f9db452d5d100bd3c05b23365e29b Author: Alan Garny '' Date: Wed Jun 6 17:14:10 2018 +1200 Some minor cleaning up. Effectively $'\342\200\234simplified\342\200\235' things by not forwarding some signals. commit 90debc86279f45b901e7521282e3a9c867a6b327 Author: Alan Garny '' Date: Wed Jun 6 16:38:28 2018 +1200 Some minor cleaning up '(#1679).' commit 2d88dd57009c8aaadd23a0a2ebad86e876240de2 Author: Alan Garny '' Date: Wed Jun 6 16:36:33 2018 +1200 Editor widget: now process highlighting/replacing all much faster '(#1679).' Well, for replacing all, we still need to do a bit more work that has already been identified. commit 4880f8c57b8b9a2a7df003523956b90b91cd3fe5 Author: Alan Garny '' Date: Wed Jun 6 10:39:20 2018 +1200 Editor widget: 'don'\''t' clear the highlighting if we only press the Shift, Ctrl, Alt or Meta key '(#1679).' commit 5c017baf744dedcc4909ee24c7486a5fa6c721da Merge: b9455ca93 65f88fb4a Author: Alan Garny '' Date: Wed Jun 6 10:25:04 2018 +1200 Merge branch ''\''master'\''' into issue1679. commit 65f88fb4a7464e4568449dd515918333e10a5666 Merge: adace6956 97216e83d Author: Alan Garny '' Date: Wed Jun 6 10:23:04 2018 +1200 Text-based editors: now have word-wrap alignment '(closes' '#1680).' commit 97216e83d3eae49fed7ffd0cf07a99a2927ee6d7 Author: Alan Garny '' Date: Wed Jun 6 10:08:44 2018 +1200 Slight update to our downloads page '(#1680).' commit db7d2b18e8be3711489f698463afaf1c0079273a Author: Alan Garny '' Date: Wed Jun 6 10:06:05 2018 +1200 Text-based editors: now have word wrap alignment '(#1680).' commit 818c2618836cb7bd9dc4de9cc68c7c840503f773 Author: Alan Garny '' Date: Wed Jun 6 10:04:11 2018 +1200 Some minor cleaning up. commit dc7a674f59a29596f2454923c2b1f9a7e590a89a Author: David Brooks '' Date: Tue Jun 5 22:03:15 2018 +1200 Graphs: revert code back to not using a different colour for each run. commit 568580fbfcd747c64724d8cba3f0ccc8edea0544 Author: David Brooks '' Date: Tue Jun 5 22:01:30 2018 +1200 Python: '`set_python_path.py`' belongs with Python plugin. commit 212aadd5a58496c12aa64664df21254139232550 Merge: cc977d7b3 adace6956 Author: David Brooks '' Date: Tue Jun 5 16:45:26 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit b9455ca93fbadb8601d26065f01f941685dc6edf Author: Alan Garny '' Date: Tue Jun 5 15:40:49 2018 +1200 Editor widget: better handling of the cursor position '(#1679).' commit 890c016143f345904dccd87f5ddeb2c55a9890ff Author: Alan Garny '' Date: Tue Jun 5 15:12:08 2018 +1200 Editor widget: made our vertical scroll 'bar'\''s' thumb more visible '(#1679).' commit f7fa8eb886b806d6e01dd58091e5fc8d74dae4dd Author: Alan Garny '' Date: Tue Jun 5 15:03:14 2018 +1200 Some minor cleaning up. commit 4e65d348ca6064308378560814187272d0f0d742 Author: Alan Garny '' Date: Mon Jun 4 21:56:29 2018 +1200 Some minor cleaning up. commit 8cb7fc20267dd4ffbc569e703cf5a1d591ec788e Author: Alan Garny '' Date: Mon Jun 4 16:19:26 2018 +1200 Editor widget: no need to '(re)select' text after highlighting it upon double clicking '(#1679).' commit da74e90248003de64239b7f081a8e074a3d01ed7 Author: Alan Garny '' Date: Mon Jun 4 16:11:09 2018 +1200 CellML Text view: slight improvement to our uncommenting of some code '(#1679).' commit e908170907c78f342b5b6554d20036f5d55a7406 Author: Alan Garny '' Date: Mon Jun 4 16:09:17 2018 +1200 QScintilla support: slight improvement to our 'QScintillaWidget::selectWordAt()' method '(#1679).' commit 024c5488f0adddc194e8dcf9327f50611543df1a Author: Alan Garny '' Date: Mon Jun 4 15:16:02 2018 +1200 Some minor cleaning up. commit e45b227d2a22b5ff80e96a03e79c1b39ffe5dcec Author: Alan Garny '' Date: Mon Jun 4 14:52:50 2018 +1200 Editor widget: always show our find/replace widget with the '"selected"' text '(#1679).' The idea is that if nothing is selected and there is no word at the current position, then we start with with no find text '(while' before we could have had the previous find text, had the find/replace widget been shown and then hidden 'before).' commit cc1b7b97be164185fa384bde98fbc33fe58418f6 Author: Alan Garny '' Date: Mon Jun 4 13:57:03 2018 +1200 Some minor cleaning up. commit 3bf41c14a8aca3d25375be4e54599eecafc7458c Author: Alan Garny '' Date: Mon Jun 4 13:55:56 2018 +1200 Editor widget: no need to wait half a second between two highlighting '(#1679).' Our new highlighting code is much faster, so no need to wait that long anymore. Still, we want to do it through a single shot since it $'can\342\200\231t' harm. commit c960711df5b74ddeb3cbb74c4c679dee44973b7f Author: Alan Garny '' Date: Mon Jun 4 13:44:48 2018 +1200 Editor widget: 'don'\''t' reselect the current word when highlighting all '(#1679).' Indeed, '(our' 'new)' highlighting all $'shouldn\342\200\231t' change whatever is currently selected. commit 07c9d9ba19185ebf0ee43886a51db5ed94595d33 Author: Alan Garny '' Date: Mon Jun 4 13:42:28 2018 +1200 Editor widget: improved the showing of our find/replace widget '(#1679).' commit 2bf67bc9d5503199bf5692cc7921d7a2c39f7ab5 Author: Alan Garny '' Date: Mon Jun 4 13:36:10 2018 +1200 Editor widget: improved the painting of our vertical scroll bar '(#1679).' We now paint our lines using an alpha colour '(so' we can see the scroll bar 'cursor).' Not only that, but we also allow only one line at a given position '(otherwise' the alpha value of that line might become 'irrelevant).' commit ad653e017d4448f0e6acb98b7346eb70921ce084 Author: Alan Garny '' Date: Sun Jun 3 17:49:41 2018 +1200 Some minor cleaning up '(#1679).' commit c87d1b3561f74fe6b2f2811e96cbb5d2edf4cf58 Author: Alan Garny '' Date: Sun Jun 3 14:40:31 2018 +1200 Editor widget: very slight speed improvement '(#1679).' commit ef541643df98da4d5c3628fa1a2156656b5bf0d8 Author: Alan Garny '' Date: Sun Jun 3 13:54:55 2018 +1200 Editor widget: very slight speed improvement '(#1679)' commit 69f0b49b4c6b9451d7f0dbfbe4b4b12d2016a93c Author: Alan Garny '' Date: Sun Jun 3 13:51:38 2018 +1200 Editor widget: very slight speed improvement '(#1679)' commit 2bdc14a8d951cea3e488293fc05ff06746a4b3b0 Author: Alan Garny '' Date: Sat Jun 2 19:57:25 2018 +1200 Editor widget: slight speed improvement by directly interacting with Scintilla '(#1679)' commit adace69564f2b5e971c745a653af5c6cf8a14c32 Merge: a430b7aa2 6c9201252 Author: Alan Garny '' Date: Fri Jun 1 20:22:43 2018 +1200 Editor widget: prevent infinite '"Replace' 'all"' actions '(closes' '#1677).' commit 6c9201252e4a987d00f3db6833d0906ee6c4d008 Author: Alan Garny '' Date: Fri Jun 1 19:27:48 2018 +1200 Slight update to our downloads page '(#1677).' commit 6ada9bcd194b2b751a39909ba3da8d2603b45268 Author: Alan Garny '' Date: Fri Jun 1 19:25:04 2018 +1200 Some minor improvement. commit 35693cea463e41834abf0130a6c59341767d181e Author: Alan Garny '' Date: Fri Jun 1 16:01:53 2018 +1200 Editor widget: prevent infinite '"Replace' 'all"' '(#1677).' commit aa9c74d11e0288d51c7128d8a9b26581e3ad4191 Author: Alan Garny '' Date: Fri Jun 1 15:50:17 2018 +1200 Editor widget: speed things up by temporarily disabling the tracking of changes when replacing all '(#1677).' commit bf6495aee11d7613b59233bc8b9da09ef71b67d7 Author: Alan Garny '' Date: Fri Jun 1 11:33:32 2018 +1200 Added the user and developer documentations as a sub module '(#1544).' commit b0fe17861a1ef391ae22c2005ae9b0340025af38 Author: Alan Garny '' Date: Fri Jun 1 11:24:48 2018 +1200 Updated our .gitattributes file. commit 84b46ba053e27a5b65b7a83c1e92627994d45607 Author: Alan Garny '' Date: Fri Jun 1 10:55:46 2018 +1200 Rely on our copy of Sphinx to build the documentation '(#1544).' commit 12427fe5e23364bf4190dcfbefa6b65a9aabf98f Merge: 55f4ea8bc a430b7aa2 Author: Alan Garny '' Date: Fri Jun 1 09:08:26 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit a430b7aa21775ff69f02e87be1dd545287e26b57 Author: Alan Garny '' Date: Thu May 31 19:12:50 2018 +1200 Some minor cleaning up. commit d39e9b5ff2e0198718cf34638c36653798bcad6e Merge: 773722d03 9bcaf2dd6 Author: Alan Garny '' Date: Thu May 31 18:54:09 2018 +1200 High DPI support. commit 9bcaf2dd66aee13af4397bf2614fbc3bb696a634 Author: Alan Garny '' Date: Thu May 31 18:04:06 2018 +1200 Added support for high DPI. commit 773722d03c419bfb6efb271367a543e5763a4446 Merge: 59ccb9837 6d546d022 Author: Alan Garny '' Date: Thu May 31 17:57:21 2018 +1200 libSBML: upgraded to version 5.17.0 '(closes' '#1671).' commit 6d546d02266477cd6777d82a15995281050616af Author: Alan Garny '' Date: Thu May 31 17:33:14 2018 +1200 Some minor cleaning up. commit b3a045bab98d60e87b5a023d38380b79ed579b3a Author: Alan Garny '' Date: Thu May 31 17:24:02 2018 +1200 Some minor cleaning up. commit 51081b03ccddbc9db1727acef4aac952f03ea535 Author: Alan Garny '' Date: Thu May 31 16:55:42 2018 +1200 Some minor cleaning up. commit 3bc80b67716dc569e3a4c34cecec8b4754e6ba8e Author: Alan Garny '' Date: Thu May 31 16:17:43 2018 +1200 Some minor cleaning up. commit 163b39736c28bd92deb39c8db81fd2c48b3ae0d5 Author: Alan Garny '' Date: Thu May 31 14:26:58 2018 +1200 Stop building libSEDML '(#1671).' commit 241d7f08a9eca418778eb30671b901b3b92dda75 Author: Alan Garny '' Date: Thu May 31 14:26:26 2018 +1200 SED-ML API package: new binaries '(#1671).' commit 0ef6ae6b4128495de10094938aaa8cb1edff6b40 Author: Alan Garny '' Date: Thu May 31 14:17:52 2018 +1200 Building libSEDML since it relies on libSBML '(#1671).' On Linux and macOS, it $'doesn\342\200\231t' matter, but on Windows it does since we must import symbols. This being, libSEDML used to be built with ZLIB on while we have it disabled for libSBML. So, we want the two libraries to be in sync, if anything. commit 288057c5198045a4d8ccc7ac84bb2b8bd220dcbe Author: Alan Garny '' Date: Wed May 30 17:58:58 2018 +1200 SBML API package: updated our tests '(#1671).' commit 59ccb983704f3b9b2962f20622027fbc67207e45 Merge: 3c3f075b4 84664c7e6 Author: Alan Garny '' Date: Wed May 30 16:13:01 2018 +1200 libSBML: upgraded to version 5.17.0 '(closes' '#1671).' commit 84664c7e61876c5237ba36239bcf8a57dbd69ca0 Author: Alan Garny '' Date: Wed May 30 15:59:04 2018 +1200 Stop building only the SBML API package '(#1671).' commit 36a6a3c7b02f6e0dba9f0de40e1f4a51e3882865 Author: Alan Garny '' Date: Wed May 30 15:58:22 2018 +1200 SBML API package: binaries for version 5.17.0 '(#1671).' commit 8e8b9d2a33209f638d49c8faf49f103780c92cb5 Author: Alan Garny '' Date: Wed May 30 15:24:53 2018 +1200 Only build the SBML API package '(#1671).' commit 9ae34dc802ec548945c4b55542dde694277a8a51 Author: Alan Garny '' Date: Wed May 30 15:24:20 2018 +1200 SBML API package: upgraded to version 5.17.0 '(#1671).' commit 3c3f075b400228dc66be8e85e199e2a11d30f225 Merge: 5f1504ed1 93cef9c9d Author: Alan Garny '' Date: Wed May 30 15:04:15 2018 +1200 libgit2: upgraded to version 0.27.1 '(closes' '#1672).' commit 93cef9c9d26d66ae17dde3c75b4a3bd4c6c1e6cd Author: Alan Garny '' Date: Wed May 30 14:36:55 2018 +1200 Slight updates to our downloads pages '(#1672).' commit 83b7695632fe1cd4471c723f9c4b24b7f0948906 Author: Alan Garny '' Date: Wed May 30 14:34:10 2018 +1200 Stop building only the libgit2 package '(#1672).' commit 770621f72f8ac908ea887524101eb2d1f5972593 Author: Alan Garny '' Date: Wed May 30 14:33:36 2018 +1200 libgit2 package: binaries for version 0.27.1 '(#1672).' commit b60dfb6be85ebe562c540e109c78638ba1e7dc36 Author: Alan Garny '' Date: Wed May 30 14:21:29 2018 +1200 Only build the libgit2 package '(#1672).' commit 2264fac4a4e8d52b9ed359632b2dae5873d7657d Author: Alan Garny '' Date: Wed May 30 14:20:25 2018 +1200 Only build the libgit2 package '(#1672).' commit 32c31fc7db3782df975c220e2b1f00269196f53c Author: Alan Garny '' Date: Wed May 30 14:17:13 2018 +1200 Only build the libgit2 package '(#1672).' commit 7c6cefbdccb50fb5b87a2af338da6b6b366acb0c Author: Alan Garny '' Date: Wed May 30 14:16:55 2018 +1200 libgit2 package: upgraded to version 0.27.1 '(#1672).' commit 55f4ea8bc4aa02025c5db89953608b5d43c4cfc6 Merge: 66bf995e4 5f1504ed1 Author: Alan Garny '' Date: Wed May 30 11:19:17 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit cc977d7b3a9a64107c9b95bce51347aba174f26b Merge: 2f472d4aa f2c30165f Author: David Brooks '' Date: Tue May 29 21:01:09 2018 +1200 Merge branch ''\''pythonplugin'\''' of github.com:dbrnz/opencor into pythonplugin commit 2f472d4aa6b123f6bdf1f1e7ee46d40a3cf7461f Merge: bef376426 5f1504ed1 Author: David Brooks '' Date: Tue May 29 21:00:36 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 5f1504ed152868d0f2ff277785a82cc6578d86bb Merge: 42162b9d2 a32ba377c Author: Alan Garny '' Date: Tue May 29 18:48:38 2018 +1200 New snapshot. commit a32ba377cc1c27a542d909aea29c1f3ce3e90544 Author: Alan Garny '' Date: Tue May 29 18:18:06 2018 +1200 New snapshot. commit 42162b9d280e04bb4aaa44f0b3fa933022750e07 Merge: cdadcb095 558947fcd Author: Alan Garny '' Date: Tue May 29 18:17:31 2018 +1200 Simulation Experiment view: now keep track of unselected graphs in a SED-ML file / COMBINE archive '(closes' '#1631).' commit 558947fcd8fcb526d3e4b63bc3cad4ee51bcc479 Author: Alan Garny '' Date: Tue May 29 17:40:44 2018 +1200 Some minor cleaning up. commit e39fbaeec95f94dfcfa9cf422586147e0169d1a3 Author: Alan Garny '' Date: Tue May 29 17:39:35 2018 +1200 Graph Panel widget: properly initialise the selected state of a graph '(#1631).' commit f53ca461f8761f409e1c8352e3b659fe8f46f0fa Author: Alan Garny '' Date: Tue May 29 17:15:42 2018 +1200 Some minor cleaning up. commit e96ed325afc6709ae46cf37a8bf741a9a6fc1468 Author: Alan Garny '' Date: Tue May 29 17:07:34 2018 +1200 Graph Panel widget: properly initialise the selected state of a graph '(#1631).' commit 80e09a8233d7da6bb288f1c44313cd06266d062c Author: Alan Garny '' Date: Tue May 29 16:44:44 2018 +1200 Graph Panel widget: a graph can now be initialised selected or unselected '(#1631).' commit 53435eda02977611d773abf2abc8459c5388cf86 Author: Alan Garny '' Date: Tue May 29 16:40:16 2018 +1200 Some minor cleaning up '(#1631).' commit 4ec66c44c8c2687544c8f82734b8e66b0292f80d Author: Alan Garny '' Date: Tue May 29 16:28:34 2018 +1200 Some minor cleaning up '(#1631).' commit cdadcb095df5b1dc8a4ff423f709f1ae74cedab7 Merge: d631ab639 0b332c671 Author: Alan Garny '' Date: Tue May 29 16:03:51 2018 +1200 Simulation Experiment view: now keep track of unselected graphs in a SED-ML file / COMBINE archive '(closes' '#1631).' commit 0b332c6718d84890e462b8fa5a3ed994532d6522 Author: Alan Garny '' Date: Tue May 29 15:46:13 2018 +1200 Slight update to our downloads page '(#1631).' commit 07ee6a62ed7a27f42c53ef7f51449dd181b7f60e Author: Alan Garny '' Date: Tue May 29 15:43:50 2018 +1200 Some minor cleaning up. commit 63444a70e45ddb0df832985a49277b19a4352977 Author: Alan Garny '' Date: Tue May 29 15:42:57 2018 +1200 Simulation Experiment view: can now retrieve '(from' a SED-ML 'file)' the selected state of a graph '(#1631).' commit 2b2a611b6ac743e1d7c2714ab6793a423eebd08d Author: Alan Garny '' Date: Tue May 29 15:27:04 2018 +1200 Simulation Experiment view: now export to SED-ML the selected state of a graph '(#1631).' commit d631ab63951fbb7955c16f64e5a46bee7899718f Author: Alan Garny '' Date: Mon May 28 16:05:52 2018 +1200 Deployment: make sure that we deploy the qavfmediaplayer plugin on macOS. For some reasons, 'it'\''s' now 'needed...?!' '(Maybe' because of 'QtWebKit?)' commit 1bfa0697785c327cb2e6984d36f9654154526a07 Merge: b4960ff8c 502c1fd12 Author: Alan Garny '' Date: Mon May 28 15:08:23 2018 +1200 Simulation Experiment view: now automatically assign a colour to a new graph '(closes' '#1665).' commit 502c1fd12aa9232a944e09a0ca966427deb63672 Author: Alan Garny '' Date: Mon May 28 14:52:03 2018 +1200 Slight update to our downloads and what is new pages '(#1665).' commit 787dc5632b1033b2c84e9f943d061cb8b16c3cdd Author: Alan Garny '' Date: Mon May 28 14:48:27 2018 +1200 Graph Panel widget: make sure that we reset our colour sequence if all the graphs have been removed '(#1665).' commit 2c0eaec86451b34b8a9e1d1cf271709cfd53fddf Author: Alan Garny '' Date: Mon May 28 14:43:24 2018 +1200 Graph Panel widget: enable our legend by default '(#1665).' commit 3bf0f9051eb5b880a4391e8058d5575ddaa7b751 Author: Alan Garny '' Date: Mon May 28 14:19:10 2018 +1200 Simulation Experiment view: now automatically assign a colour to a new graph '(#1665).' commit b4960ff8c7d6a3e5c069649814bb90ce96ffa505 Merge: 931d77843 b0704d223 Author: Alan Garny '' Date: Sun May 27 13:31:15 2018 +1200 Prevent warnings on Linux. commit b0704d223fe3857cf8afdd2378b40ffb885149d0 Author: Alan Garny '' Date: Sun May 27 12:45:13 2018 +1200 Some minor cleaning up. commit e4d2ad26c01553bdfce45fcdb91aa32739e4b9e3 Author: Alan Garny '' Date: Sun May 27 11:49:00 2018 +1200 Prevent a warning on Linux. commit f16e91c43d8fc1cfdd0a294a22b696dca28c8471 Author: Alan Garny '' Date: Sun May 27 11:48:36 2018 +1200 Some minor cleaning up. commit 947b6a64607976083c109ee118ae3e75169db107 Author: Alan Garny '' Date: Sun May 27 11:42:28 2018 +1200 Prevent a couple of warnings on Linux. commit 2a1feed0244cd90dffb35f9cb7a8d191a75b1910 Author: Alan Garny '' Date: Sun May 27 11:36:02 2018 +1200 Prevent a warning on Linux. commit 931d77843dee700e823bd0780dcfb8287571758f Merge: e4fc4413d 4038227aa Author: Alan Garny '' Date: Sun May 27 10:30:57 2018 +1200 Some cleaning up. commit 4038227aaebc53408bbdb1d1ebbc27b4bf3e0275 Author: Alan Garny '' Date: Sun May 27 10:10:21 2018 +1200 Some minor cleaning up. commit 61ee1c264d98706f43ea775994438edc67e54746 Author: Alan Garny '' Date: Sun May 27 10:08:41 2018 +1200 Some minor cleaning up. commit 16adf6ada5d717bc1fcbfaea97fe420da777c478 Author: Alan Garny '' Date: Sun May 27 09:55:29 2018 +1200 Simulation Experiment view: make sure that mGraphPanelsWidgetSizes gets properly initialised. commit 42126edabe932fa704b4cbd58746c8f104a79e13 Author: Alan Garny '' Date: Sun May 27 09:49:55 2018 +1200 Some minor cleaning up. commit ff1476f32e5e4bcfbb37a464b6f6b9d422af40a6 Author: Alan Garny '' Date: Sat May 26 21:35:22 2018 +1200 Graph Panel widget: prevent a GUI glitch on Windows and Linux. commit f2c30165f28afb233e0ff06c3d0a65e23a5ccc8f Merge: bef376426 0038069d9 Author: David Brooks '' Date: Sat May 26 20:36:03 2018 +1200 Merge branch ''\''jupytercli'\''' into pythonplugin commit 0038069d96dd0b2a6ede68924bd2dca6edfeaf6a Author: David Brooks '' Date: Sat May 26 20:24:04 2018 +1200 Python: extend '`set_python_path.py`' to optionally add extra arguments for Python. commit 9141d046333130e5ea13ff13059b074cb126208f Author: David Brooks '' Date: Sat May 26 20:08:39 2018 +1200 Python: implement '`OpenCOR.closeSimulation()`' commit 6044b09d2a6790ab6cd76b87a4cbbe0685af54d3 Author: David Brooks '' Date: Sat May 26 08:29:23 2018 +1200 Python: tidy code. commit ebf62f2dc71464f3511fa4498ad6172eda80e9ce Author: David Brooks '' Date: Sat May 26 08:28:56 2018 +1200 Python: ''\''unmanage'\''' the file if CLI version 'couldn'\''t' open it. commit 58d80f3ea679c6d526e9207ca75a7d00b7900f48 Author: David Brooks '' Date: Sat May 26 08:27:10 2018 +1200 Python: we still need to open files via the central widget when using the console. commit 0bdb49cefe125d844ed8ca235481f2fdc7f8a569 Merge: 19c8248ae e4fc4413d Author: Alan Garny '' Date: Fri May 25 18:20:48 2018 +1200 Merge branch ''\''master'\''' into cleaning-up. commit e4fc4413de7b3150fab3953ea823c346d46849df Merge: 4b42b6ad7 6f1a933c5 Author: Alan Garny '' Date: Fri May 25 16:17:21 2018 +1200 Simulation Experiment view: now provide a default value for the legend title of a valid graph '(closes' '#1662).' commit 6f1a933c50942e4bf5f3e6ae3e2cc53aeb7012d3 Author: Alan Garny '' Date: Fri May 25 16:02:56 2018 +1200 Slight update to our downloads page '(#1662).' commit a7381b268c5595ac1c53b3a84d0e25a26a06af9e Author: Alan Garny '' Date: Fri May 25 16:01:39 2018 +1200 Simulation Experiment view: now provide a default value for the legend title of a valid graph '(1662).' commit 5b5c1ef3037ccd033800ad34968b1c5f65026342 Author: David Brooks '' Date: Thu May 24 21:38:14 2018 +1200 Python: load SED-ML information into a simulation. commit 8aae8e3b7c3b0fc6f43c618a8a8126f613ad19a1 Author: David Brooks '' Date: Thu May 24 21:35:32 2018 +1200 Python: make sure we use the appropriate matplotlib backends. commit 0a9de46114eda119daec1437f9388290adf7be1e Author: David Brooks '' Date: Thu May 24 21:32:57 2018 +1200 Python: we need the solver plugins in the CLI application. commit bef376426d01522956a33a1ac6c0c6389e2af869 Merge: ab55d989f 4b42b6ad7 Author: David Brooks '' Date: Thu May 24 16:31:40 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit ab55d989fbc3c250770981ad82f2b5bda36b0c49 Merge: 05dab62f7 dd07afd0f Author: David Brooks '' Date: Thu May 24 16:29:17 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 05dab62f75445668ee8f272638bc3e52cac9ad8e Author: David Brooks '' Date: Thu May 24 16:24:52 2018 +1200 Python: distribute '`set_python_path.py`' script with installers. commit 8e89fec4bfee112ffac9b792d83158e5790f3321 Author: David Brooks '' Date: Thu May 24 16:23:46 2018 +1200 Python: keep Python in a sub-directory for Linux. commit 19c8248ae3945790d1e05ae93af1b91cc1786b51 Author: Alan Garny '' Date: Thu May 24 15:46:45 2018 +1200 Revert '"Central' widget: prevent a GUI glitch when changing 'modes."' This reverts commit 771708d80c0d78d4765319a2fc0f6d57ef0a69d3. Indeed, there is definitely no need for this. $'It\342\200\231s' just that there is something between the current codebase and that of 23 April 2018 '(i.e.' our latest 'snapshot)' that is different and that results in the issue this commit was trying to address. In fact, there is another issue, which is that the Simulation Experiment view flashes a bit when switching to it and there are several graph panels, which results in the N62 SED-ML file being considered modified while it clearly $'shouldn\342\200\231t' be '(and' $'isn\342\200\231t' using the 2018-04-23 'snapshot).' So, we need to figure out what we did that causes those $'issues\342\200\246' commit f1f00d26ac73b447dc0cb34fc702b732689592da Author: Alan Garny '' Date: Thu May 24 15:01:18 2018 +1200 Some minor cleaning up. commit 771708d80c0d78d4765319a2fc0f6d57ef0a69d3 Author: Alan Garny '' Date: Thu May 24 13:49:37 2018 +1200 Central widget: prevent a GUI glitch when changing modes. commit 67c90ebf4709647ff26db9c45f6ccd0c3e20793c Author: Alan Garny '' Date: Thu May 24 11:37:45 2018 +1200 Editor widget: 'don'\''t' highlight a space-based string. commit b4b339b3509e88474796dcd642dc287ac5f2a400 Author: Alan Garny '' Date: Thu May 24 11:20:15 2018 +1200 Editor widget: make sure that we properly handle the use of TAB/BACKTAB. Also improved our handling of the Esc key. commit b48badf77bb026ed5e0b3be66130aca2577af213 Author: Alan Garny '' Date: Thu May 24 10:52:34 2018 +1200 Removed unnecessary const and const references. commit d5d0763c8ea04798dd9618b50c9dcaea6ca309aa Author: Alan Garny '' Date: Thu May 24 10:51:56 2018 +1200 Removed unnecessary const and const references. commit adcd51b6ce649a7e1d03ec5a4a9b637446de92d0 Author: Alan Garny '' Date: Thu May 24 10:07:54 2018 +1200 Some minor cleaning up. commit 4b42b6ad774eda44f54c97d1dfbf98d739621d3d Merge: 95fdcc00e 40895b0ec Author: Alan Garny '' Date: Thu May 24 09:45:07 2018 +1200 Simulation: separated out GUI dependencies '(closes' '#1657).' commit 40895b0ecc175fa171404106c7f1c242918b089a Author: Alan Garny '' Date: Thu May 24 09:15:57 2018 +1200 Some minor cleaning up '(#1657).' commit 12a16b68841284809a6755fc49644dffe7084ac5 Merge: 59933e27e 66e7e3d24 Author: Alan Garny '' Date: Thu May 24 09:11:25 2018 +1200 Only initialise parameter type to QIcon map when it is first used. This prevents a crash when using the CLI version of OpenCOR '(since' '`QIcon`' cannot be used in the CLI 'version).' commit 8938e5386f4c424baf87b19d0b42fedf46c74495 Author: David Brooks '' Date: Wed May 23 22:08:40 2018 +1200 Python: use CLI versions of file opening functions. commit ae65abbda0637f4a87f0bb3cbb2ac89efcf04279 Author: David Brooks '' Date: Wed May 23 22:07:32 2018 +1200 Tidy code. commit e31c45f731dbd20d9a785c40e417992a3868f962 Author: David Brooks '' Date: Wed May 23 22:07:01 2018 +1200 Python: the Jupyter kernel depends on the DataStore and SimulationSupport plugins. commit 66e7e3d24acd1639aa5d4b6f54454b1edc343845 Author: David Brooks '' Date: Wed May 23 18:38:16 2018 +1200 Only initialise parameter type to QIcon map when it is first used '(#1657).' If initialisation is done at plugin load time then a CLI application will crash as QIcon is a GUI class. commit cf63ec27e1ed39bb5751439684ccf34a7d904f20 Author: David Brooks '' Date: Wed May 23 18:38:16 2018 +1200 Only initialise parameter type to QIcon map when it is first used '(#1657).' If initialisation is done at plugin load time then a CLI application will crash as QIcon is a GUI class. commit 59933e27e62863e4b41e7355107721485c180b6d Merge: 1ce85a543 95fdcc00e Author: Alan Garny '' Date: Wed May 23 17:39:34 2018 +1200 Merge branch ''\''master'\''' into issue1657. commit 95fdcc00e2b653299e9078f36ebd5bf980ef8628 Merge: dd07afd0f 66c0d5cf4 Author: Alan Garny '' Date: Wed May 23 17:25:59 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file '(closes' '#1414).' commit 66c0d5cf4a75bb20bb701565460f4da0cdd07637 Author: Alan Garny '' Date: Wed May 23 16:14:58 2018 +1200 Editor widget: can now find a multiline piece of text '(#1414).' commit 79dbaf594596f50a697ae0f9ed329bfc55557432 Author: Alan Garny '' Date: Wed May 23 15:46:55 2018 +1200 Editor widget: highlight all occurrences of a word that gets selected by double clicking on it '(#1414).' commit c71e5d92958a3e4360841e4dc05fc52d95711584 Author: Alan Garny '' Date: Wed May 23 15:32:36 2018 +1200 Editor widget: optimised the highlighting/finding of some text '(#1414).' commit 656e0bd1a2df59ac6e81cfb1c0f50aea6c85ab3f Author: Alan Garny '' Date: Wed May 23 15:17:21 2018 +1200 Editor widget: highlight all occurrences of a word that gets selected by double clicking on it '(#1414).' commit d7322ffcfa21d1c1be1642688f26c2c00039019c Author: Alan Garny '' Date: Wed May 23 14:31:16 2018 +1200 Some minor cleaning up. commit f2697a85642aa0b5d0d2a239d252047c377385c4 Merge: 4a187bed0 1ce85a543 Author: David Brooks '' Date: Wed May 23 13:33:00 2018 +1200 Merge remote-tracking branch ''\''agarny/issue1657'\''' into jupytercli commit 4a187bed0f56046227eab3e8b17d331c734c1eb7 Merge: cbdf1955a dd07afd0f Author: David Brooks '' Date: Wed May 23 13:29:19 2018 +1200 Merge branch ''\''master'\''' into jupytercli commit 1ce85a543bb4946f2c8dac57120b081c66214487 Author: Alan Garny '' Date: Wed May 23 11:46:30 2018 +1200 'Don'\''t' associate an icon with a data store variable anymore '(#1657).' commit dd07afd0f06a53f5f69be6e08c94c68afe8614b1 Merge: 7aacd4164 5f4ff66cf Author: Alan Garny '' Date: Wed May 23 09:59:51 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file '(closes' '#1414).' commit 5f4ff66cf38f6f34e67b31233e4e35a1549f114b Author: Alan Garny '' Date: Wed May 23 09:40:54 2018 +1200 CellML Text editing: handle un/commenting without relying on the handling of a signal '(#1414).' commit cbdf1955a32398d1af54e739986be0d476abfe61 Author: David Brooks '' Date: Tue May 22 20:32:43 2018 +1200 Core: provide non-GUI routines for opening files. commit 799739875503ed0df83761e93285816c42e2ca3b Author: Alan Garny '' Date: Tue May 22 18:00:23 2018 +1200 Some minor cleaning up '(#1414).' commit 9461cdd492a177471cf4776f085f7254fca15f1b Merge: 13bb54d54 7aacd4164 Author: David Brooks '' Date: Tue May 22 17:59:08 2018 +1200 Merge branch ''\''master'\''' into jupytercli commit b76fd3ab1794c4c969127ccf0b7d3ee04c82228a Author: Alan Garny '' Date: Tue May 22 17:58:28 2018 +1200 Some minor cleaning up '(#1414).' commit aa0f797e47e8bf9477358186a2a8af9cd85c4e4d Author: Alan Garny '' Date: Tue May 22 17:46:56 2018 +1200 Some minor cleaning up '(#1414).' commit a916e6e0a393464423d227b9b93e013282ae4778 Merge: e14985ab0 7aacd4164 Author: Alan Garny '' Date: Tue May 22 17:28:24 2018 +1200 Merge branch ''\''master'\''' into issue1414. commit 7aacd41649d8370d6f4dd34cec68e5268fd268cf Merge: c2337b39a b630110d2 Author: Alan Garny '' Date: Tue May 22 17:27:15 2018 +1200 Some minor cleaning up. commit b630110d286476ba1e32b34ada0982d3add6cd37 Author: Alan Garny '' Date: Tue May 22 17:12:46 2018 +1200 Make sure that we hide our busy widget if we 'couldn'\''t' open a remote file. commit fc4a0d7fabab44f3ea2a8e482eeb8d37864f3977 Author: Alan Garny '' Date: Tue May 22 17:08:36 2018 +1200 Central widget: removed the need for mRemoteLocalFileNames. commit 13bb54d548892d8fd3557cfe37f9fa0b25a6985b Author: David Brooks '' Date: Tue May 22 17:05:17 2018 +1200 Python: work on running Jupyter kernel without a GUI. commit e14985ab0caba06979cd431f9685e404bcbc436c Author: Alan Garny '' Date: Tue May 22 16:46:08 2018 +1200 Various work on the Editor widget '(#1414).' - Put the code for our editor $'widget\342\200\231s' scroll bar in its own file. - Added a new file for our editor widget itself '(EditorWidgetEditorWidget).' - Now properly handle the highlighting of all occurrences of a given word, i.e. the highlighting on the scroll bar is updated whenever adding/removing some text, deleting a selection, etc. commit b477574a019afcf09fc328b204792892f789354c Author: David Brooks '' Date: Tue May 22 15:00:40 2018 +1200 Python: use updated '`ipykernel`' with fixed PythonQt eventloop. commit f41b4cb70aaec4671f8c349bd427c8c639b011e9 Author: David Brooks '' Date: Tue May 22 14:47:33 2018 +1200 Python: use our '`pythonqt`' eventloop in '`ipykernel`.' commit a6c7a18afc3254ff89e7bd89a7576835da13db2e Author: David Brooks '' Date: Tue May 22 12:41:35 2018 +1200 Python: work on Jupyter kernel code. commit 95232833bc0d62d2ffd28ded9b58ddea91c08c52 Merge: 30c307773 c2337b39a Author: David Brooks '' Date: Tue May 22 11:55:18 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 00412d82b67340466cdfef12e0a1f3b549811325 Author: Alan Garny '' Date: Mon May 21 17:36:34 2018 +1200 Editor widget: update the highlighted lines in our vertical scroll bar when adding text '(#1414).' commit 3bd3c9f73dec1cac01b733009dba824ddaa2a20b Author: Alan Garny '' Date: Mon May 21 17:06:44 2018 +1200 Some minor cleaning up. commit f67fbd0ebf83c191587fe38f710be9ec481facdf Author: Alan Garny '' Date: Mon May 21 17:01:51 2018 +1200 Some minor cleaning up. commit 24f4cd0550fdc590987205dd35fca8f13b8338d7 Author: Alan Garny '' Date: Mon May 21 16:25:25 2018 +1200 Editor widget: make sure that showing our find/replace widget not only highlight all the occurrences of the current word, but also selects it '(#1414).' commit 48f6f2ed000d22881fe818183f5641948a2dbc9c Author: Alan Garny '' Date: Mon May 21 16:08:25 2018 +1200 Some minor cleaning up. commit 41f949ec1bf928cf8a9d6942a3e6a24be6be9297 Author: Alan Garny '' Date: Mon May 21 15:45:00 2018 +1200 Some cleaning up '(#1414).' commit 8ce33c57f56148c3be1f79a47cba0fab2b8565ff Author: Alan Garny '' Date: Mon May 21 12:52:00 2018 +1200 Some minor cleaning up. commit e2ce6063695e3709d926e7672145303ebb8fb899 Author: Alan Garny '' Date: Mon May 21 11:15:29 2018 +1200 Some minor cleaning up. commit 209e0f32ff4f7c5116b0c3886e9f334ef8802fe5 Author: Alan Garny '' Date: Mon May 21 11:09:13 2018 +1200 Some minor cleaning up. commit 0bfa89588e10712815c1cf5e25d4d711845c26bb Author: Alan Garny '' Date: Fri May 18 19:06:10 2018 +1200 Some minor cleaning up '(#1414).' commit 2a1267da3abc53eb86ded7b0ffbce54ad83a4000 Author: Alan Garny '' Date: Fri May 18 18:45:45 2018 +1200 Editor widget: make sure that our scroll bar highlighting is properly shifted on Windows and Linux '(#1414).' commit 650746d3287bd046a174bb6d49d5cce013bfdaa4 Author: Alan Garny '' Date: Fri May 18 18:44:13 2018 +1200 Moved our highlighting support code from QScintillaWidget to EditorWidget '(#1414).' commit f1b750aa3716007fe8f6435fb3d6c812d2223834 Author: Alan Garny '' Date: Fri May 18 18:29:16 2018 +1200 QScintilla widget: take into account that on Windows and Linux, a vertical scroll bar has both a up and down arrow button '(#1414).' commit b19b1abd8690f63f8dba02909588e02c5716a0ee Author: Alan Garny '' Date: Fri May 18 17:04:28 2018 +1200 Slight updates to our downloads and what is new pages '(#1414).' commit f92459f3f8e48576c18b5dac9ad7abb654bf3e4d Author: Alan Garny '' Date: Fri May 18 17:00:34 2018 +1200 QScintilla editor: simplified our highlighting in the vertical scrollbar '(#1414).' Indeed, it used to be a bit too much in your face, not least because we $'can\342\200\231t' draw the slider $'\342\200\234above\342\200\235' our highlights '(as' Chrome 'does).' commit b7cd9521d598f77e09f55ba26e544d8cbad6ecad Author: Alan Garny '' Date: Fri May 18 16:33:41 2018 +1200 QScintilla widget: added support for the highlighting of lines on the vertical scrollbar '(#1414).' commit 461779ec8dbe4780674fce6b2851507db2527015 Author: Alan Garny '' Date: Fri May 18 15:43:36 2018 +1200 QScintilla support: show our cursor position on our vertical scrollbar '(#1414).' commit fbe649621452b3479fc21b5888314eea0e54ecfd Author: Alan Garny '' Date: Fri May 18 14:23:51 2018 +1200 Editor widget: make sure that our scrollbars are back to their original position upon highlighting/replacing all '(#1414).' commit 4d6dca69f98787897f93f27f9604e2eda12197a1 Author: Alan Garny '' Date: Fri May 18 14:21:55 2018 +1200 Some minor cleaning up '(#1414).' commit 99fd778d6153468865674a9a853566400cd62605 Author: Alan Garny '' Date: Fri May 18 14:12:01 2018 +1200 Editor widget: make sure that our position is still the same after some highlighting '(#1414).' commit 4407897d740e288839595dce3592e0ebae1e695f Author: Alan Garny '' Date: Fri May 18 11:27:13 2018 +1200 Editor widget: make sure that our highlighting is cleared whenever necessary '(#1414).' commit 2ed1042ab695f2be8fd49b8583721e98ef4bfff5 Author: Alan Garny '' Date: Fri May 18 11:17:29 2018 +1200 Editor widget: customised our highlighting a bit '(#1414).' commit 06a2693d3650754e2c351905d1aa44678e5a6e25 Author: Alan Garny '' Date: Fri May 18 11:01:04 2018 +1200 Text-based editors: now highlight all occurrences of a word throughout a whole file '(#1414).' commit 395e0fbed43e0444f0290cc3dd5b9131b6266441 Author: Alan Garny '' Date: Fri May 18 09:58:51 2018 +1200 Some minor cleaning up. commit b8e8e0bde7f9360fca7ac6c65c2401c469f5d362 Author: Alan Garny '' Date: Fri May 18 09:30:50 2018 +1200 Some minor cleaning up. commit c2337b39a795d1c0783bee25ec3a5fbe79d0362e Merge: 18fdf6fbc 068b6baeb Author: Alan Garny '' Date: Thu May 17 19:37:38 2018 +1200 Prevent a crash and improved our solution for issue '#1637.' commit 068b6baebd1997744a127356af49d6e34bbf426f Author: Alan Garny '' Date: Thu May 17 18:18:22 2018 +1200 macOS: properly handle the exiting of full-screen mode when pressing the Esc key '(#1637).' commit 7f70207f1db3ce2910bacecbc6f063332d1a1c08 Author: Alan Garny '' Date: Thu May 17 17:23:54 2018 +1200 Prevent a crash when leaving OpenCOR with a simulation still running. commit 18fdf6fbccb13b7137a35aaceb84119705f17c24 Merge: 111adf29d dbefbe4d0 Author: Alan Garny '' Date: Thu May 17 16:19:04 2018 +1200 Slight improvement to our MathML tests. commit dbefbe4d00e2eb9a47b83340220a513dbe1adbf7 Author: Alan Garny '' Date: Thu May 17 15:36:41 2018 +1200 Slight improvement to our MathML tests. commit 111adf29d3a5d53734acc732cb34f359cae01431 Merge: a25012001 d04d7bc74 Author: Alan Garny '' Date: Thu May 17 15:23:03 2018 +1200 Text-based editors: can now word-wrap an 'editor'\''s' contents '(closes' '#1652).' commit d04d7bc7479714fa5965b0c2a31bbf05d0ef95b6 Author: Alan Garny '' Date: Thu May 17 15:03:56 2018 +1200 Slight update to our 'what'\''s' new page '(#1652).' commit 444a736f19fc110269b0de8b14b549404652773d Author: Alan Garny '' Date: Thu May 17 15:02:15 2018 +1200 Slight update to our downloads page '(#1652).' commit 31aafda59b8eaebb995ae16d9f118ad9cbf0b2d1 Author: Alan Garny '' Date: Thu May 17 14:59:58 2018 +1200 Text-based editors: remember about word-wrapping '(#1652).' commit 73b9cdd7fddead7adc7e3e8ce7752de2dc7936bd Author: Alan Garny '' Date: Thu May 17 14:59:21 2018 +1200 Editing view: updated our French translations '(#1652).' commit 7019ca0d3a71f49abafda0732d746fd6d92808fb Author: Alan Garny '' Date: Thu May 17 14:58:37 2018 +1200 Some minor cleaning up. commit 694d0431ff643512f12c6997583107e74ad8d4ba Author: Alan Garny '' Date: Thu May 17 14:38:18 2018 +1200 Text-based editors: can now word-wrap an 'editor'\''s' contents '(#1652).' commit a25012001d6390cfe2bc1a28d5ab5bee14810916 Author: Alan Garny '' Date: Thu May 17 13:42:02 2018 +1200 Windows: prevent a warning when using LLVM+Clang. commit 13207553ea35b5c40a34b3a283ba04446577c97f Merge: e361f2703 3ed7b35b1 Author: Alan Garny '' Date: Thu May 17 12:59:30 2018 +1200 LLVM+Clang: upgraded to version 6.0.0 '(closes' '#1552).' commit 3ed7b35b1bcc64a4e3d9dd2251161215ff816954 Author: Alan Garny '' Date: Thu May 17 11:58:48 2018 +1200 Stopped using Travis CI. Indeed, we now have everything set up and working nicely on Jenkins. Not only that, but issue '#1552' is building/testing fine locally on Jenkins, but not on Travis CI '(though' our Docker Ubuntu 16.04 'LTS)' and I am really not sure why. I spent a full day trying to figure out, but to no avail. So, since Jenkins is working '(and' also build/test on Windows and 'macOS),' we might as well only use that, not to mention that we can rely ccache on Jenkins, thus making our builds faster. commit e769589a0331e06b8b4bdad3c3630d090d18a700 Author: Alan Garny '' Date: Thu May 17 09:21:58 2018 +1200 Some minor cleaning up. commit 35cb856f18520cf83b38324e4b956b157896bd04 Author: Alan Garny '' Date: Thu May 17 09:19:50 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit 30c3077733548196e548feb49eaa18f3eef3bf3c Author: David Brooks '' Date: Wed May 16 20:33:06 2018 +1200 Python: actually package runtime libraries for Linux. commit b6fc9113e86d502d9c4090b1020ad76612a86cb9 Author: David Brooks '' Date: Wed May 16 19:40:43 2018 +1200 Linux: make sure Python library can be found by dynamically loaded modules. This was originally commits b108e853206, e1c9bedffa0 and 7832a95e3f6, which were lost as a result of merging. commit 8e6cf78ed3740ce5b8721ae550b8afbd3b3c686a Author: Alan Garny '' Date: Wed May 16 16:51:42 2018 +1200 Built a special version of LLVM+Clang to see whether this is the cause of our problems on Travis CI. commit 4f69cd014495087482dd04bac84d4996cfb96135 Author: Alan Garny '' Date: Wed May 16 15:19:29 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit fa7a4b62c85286b78f20b3e3bd0586d45cf094a2 Author: Alan Garny '' Date: Wed May 16 14:45:47 2018 +1200 Travis CI: optimising the packages we need on Ubuntu. commit ffe25c8e6cba2dd539e691c854b7dddd622e8b4a Author: Alan Garny '' Date: Wed May 16 14:11:11 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit 05e42e91c09d272d956058b8dae4f667c681ee5b Author: Alan Garny '' Date: Wed May 16 12:22:26 2018 +1200 Travis CI: optimising the packages we need on Ubuntu. commit b30eb743bd42757e716d78a5b53c4bb20e88f7d7 Author: Alan Garny '' Date: Wed May 16 10:15:32 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit 2970f1c2690310b8515f8a29c24ea5f8988d73c8 Author: Alan Garny '' Date: Wed May 16 09:19:16 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit 1d5582aba6861a96d317f4471137aac6e98e5238 Author: Alan Garny '' Date: Tue May 15 23:38:35 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit 4efc7514b2564fca7f60024ea3f73a4d8c84fa34 Author: Alan Garny '' Date: Tue May 15 22:57:17 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit f684da10a6d18f3ccb0e3ad79f5f853d111c4a85 Author: Alan Garny '' Date: Tue May 15 22:07:04 2018 +1200 Travis CI: some tests to understand why things are now 'failing...!?' commit e2cf0a4a2cf99cdd8867c2a6298ddb7f029a065f Author: Alan Garny '' Date: Tue May 15 22:06:37 2018 +1200 Travis CI: upgraded to Qt 5.9.5. commit 9d408ad1c4ff46fb8a36986d7ed6488c8153f58f Author: Alan Garny '' Date: Tue May 15 20:05:41 2018 +1200 LLVMClang package: new Windows binaries '(#1552).' commit 2c48184dd9bec61ec01eb8f5e456430b7eb59e79 Author: Alan Garny '' Date: Tue May 15 16:50:00 2018 +1200 Slight update to our downloads page '(#1552).' commit 77b8f0d1a52f6eeefafcdf511137d20391197f6b Author: Alan Garny '' Date: Tue May 15 16:47:49 2018 +1200 Simulation Experiment view: make sure that mGraphPanelsWidgetSizes gets properly initialised upon export a SED-ML file / COMBINE archive. commit edec2ba23f1db742c45f02b6ad07b7e9e1bd72f5 Author: Alan Garny '' Date: Tue May 15 16:44:06 2018 +1200 Some minor cleaning up. commit f2d8f9a34d58ed456e71aa2e28882d2df2213ae9 Author: Alan Garny '' Date: Tue May 15 14:58:14 2018 +1200 Stop building on LLVM+Clang '(#1552).' commit c994a6e2ffa09064104432f219e225cfc234aea4 Author: Alan Garny '' Date: Tue May 15 14:39:50 2018 +1200 LLVMClang package: new Linux and macOS binaries '(#1552).' commit 8c0b5a3bbb1b95ecde94b00870b788d667e3c372 Author: Alan Garny '' Date: Tue May 15 14:21:55 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit 68993ad1a5749865bdf5a8045b6342e566e3365f Author: Alan Garny '' Date: Tue May 15 09:31:33 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit bbad5004d0abff0c2e2701b90848ca3b67eb4a71 Author: Alan Garny '' Date: Tue May 15 09:26:53 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit 5d651b90d59279ed4b360cf981bd4c2180283dfc Author: Alan Garny '' Date: Mon May 14 23:36:02 2018 +1200 LLVMClang package: upgraded to version 6.0.0 '(#1552).' commit 2f3df74c634d093b06571e440972207ceb2d7396 Author: Alan Garny '' Date: Mon May 14 23:35:24 2018 +1200 Only build LLVM+Clang '(#1552).' commit e361f270315f98c78f52d859407990c698b07f2b Merge: 38f395b87 53d91e911 Author: Alan Garny '' Date: Mon May 14 19:19:07 2018 +1200 CellML Text view: keep track of a CellML $'file\342\200\231s' documentation '(closes' '#1642).' commit 53d91e9110d438870c40eb310e5cb584a9e9d2c5 Author: Alan Garny '' Date: Mon May 14 17:58:00 2018 +1200 Slight update to our downloads page '(#1642).' commit 4fe92aa0fa9f8744976855699df3fe3315fbd59b Author: Alan Garny '' Date: Mon May 14 17:17:26 2018 +1200 Slight update to our downloads page '(#1642).' commit 6918a75b980c41c89eeb1ed91fe6d24528a47333 Author: Alan Garny '' Date: Mon May 14 17:15:35 2018 +1200 CellML Text view: keep track of a CellML $'file\342\200\231s' documentation '(#1642).' commit 38f395b8784445ad2d0569233b94f203ab1bea14 Merge: d227018b9 d7823d236 Author: Alan Garny '' Date: Sun May 13 10:36:53 2018 +1200 Prevent OpenCOR from crashing when selecting Tools '|' Reset All. commit d7823d236e3e680328fe842dacc9f709c76a9e62 Author: Alan Garny '' Date: Sun May 13 09:56:10 2018 +1200 Prevent OpenCOR from crashing when selecting Tools '|' Reset All. It looks like this might '(somehow?)' be related to our use of the new signal/slot 'mechanism?' At least, that seems to be the only difference between the 17 March and 23 April snapshots when it comes to 'MainWindow::updateDockWidgetsVisibility().' commit d227018b9eff0cba30ab9af76818832efce53317 Author: Alan Garny '' Date: Sat May 12 22:56:07 2018 +1200 Some minor cleaning up. commit b372a3435aab821c660276d16243b7cc39a028f9 Merge: 8d953e1ae 2ea0a3f2c Author: Alan Garny '' Date: Sat May 12 21:14:39 2018 +1200 QtWebKit package: statically linked JPEG, PNG and ZLIB on Linux and macOS. commit 2ea0a3f2c1b67b99c5a06930e4fdc306462b4ab6 Author: Alan Garny '' Date: Sat May 12 19:49:35 2018 +1200 Some minor cleaning up. commit e4e881b1efabf26e2a771ea88a5a2ac2a382d775 Author: Alan Garny '' Date: Sat May 12 19:08:26 2018 +1200 Stop building only the QtWebKit package. commit d21e353e96563cfa49c6f1f4d8ab0e9332c27bd9 Author: Alan Garny '' Date: Sat May 12 19:06:57 2018 +1200 QtWebKit package: new Windows binaries. commit 46bd014d72ec050beece0ba3849f14b5507a56ae Author: Alan Garny '' Date: Sat May 12 13:28:40 2018 +1200 QtWebKit package: new Linux and macOS binaries. commit e4e20b3c9faee24ef8fbd9dac3d2943984c3be24 Author: Alan Garny '' Date: Sat May 12 12:45:29 2018 +1200 Some minor cleaning up. commit 3ea19790e13bb0145953cdab194adf855b70f8f0 Author: Alan Garny '' Date: Sat May 12 11:42:45 2018 +1200 Some minor cleaning up. commit b5108d95553f9b50689780420b2d2d89b8220366 Author: Alan Garny '' Date: Sat May 12 11:10:11 2018 +1200 QtWebKit package: use -fPIC for JPEG, PNG and ZLIB '(on' Linux and 'macOS).' commit b6936abb2d1f5efd6908285190e62d438bc93390 Merge: 955ba6cd9 b859fc96a Author: Alan Garny '' Date: Sat May 12 11:09:06 2018 +1200 Merge branch ''\''master'\''' of https://github.com/agarny/opencor. commit 955ba6cd94fdfcc80f8c0a8769168c0b97f69918 Author: Alan Garny '' Date: Sat May 12 11:08:38 2018 +1200 Some minor cleaning up. commit b859fc96a1b377e891c42388ea2abecfa6b3c837 Merge: a803ba8cd ec4d30219 Author: Alan Garny '' Date: Sat May 12 10:44:39 2018 +1200 Merge branch ''\''master'\''' of https://github.com/agarny/opencor commit a803ba8cd98e2cf4905536707f52faa99ab3b6aa Author: Alan Garny '' Date: Sat May 12 10:43:11 2018 +1200 Some minor cleaning up. commit ec4d3021934c58fcfedeb8969f952ea2aadb0424 Author: Alan Garny '' Date: Sat May 12 10:27:30 2018 +1200 QtWebKit package: have it depend on our copy of JPEG, PNG and ZLIB on Linux and macOS. commit 49bd7f437cb8f72556a1bcbb0c0a38211df7622e Author: Alan Garny '' Date: Sat May 12 08:58:42 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 50f3826a4fb776716859f9950c85b9e0757e8e9c Author: Alan Garny '' Date: Fri May 11 18:21:04 2018 +1200 QtWebKit package: statically link ZLIB. commit 9befc97d3a812f29e027db56748cc650c1366794 Author: Alan Garny '' Date: Fri May 11 17:53:17 2018 +1200 QtWebKit package: statically link libpng. commit 3229db239538481fa2fb2f0d13d111b333e662b1 Author: Alan Garny '' Date: Fri May 11 15:53:47 2018 +1200 QtWebKit package: statically link libjpeg. commit 43b85bd0d614cc98aac6d336cd0abfee1145c28a Author: Alan Garny '' Date: Fri May 11 15:46:27 2018 +1200 QtWebKit package: slight update to our README.rst file. commit f38226413e53b2623245e775e6df008a87478de7 Author: Alan Garny '' Date: Fri May 11 15:09:26 2018 +1200 QtWebKit package: slight update to our README.rst file. commit b0c204ea97fce3531f6ce0c1416ef32fc96cb383 Author: Alan Garny '' Date: Fri May 11 11:24:26 2018 +1200 Some minor cleaning up. commit c8c591d75f0b15c20eca39c5e2cf5ff703eaf90f Author: Alan Garny '' Date: Fri May 11 09:10:16 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 0a195c2309d0b028880849d36984abf4dba9e53a Author: Alan Garny '' Date: Fri May 11 09:01:58 2018 +1200 Only build the QtWebKit package. commit ae2786e132b815abd16cd5b0bc1f5664bb2f5962 Author: Alan Garny '' Date: Thu May 10 17:41:25 2018 +1200 QtWebKit package: slight update to our README.rst file. commit 8d953e1aee69612bffb1f9ffd03bbbfd46bae867 Author: Alan Garny '' Date: Thu May 10 16:28:14 2018 +1200 QtWebKit package: updated our macOS binary. commit 3a3a1e8f05f5c667bcee75433c59a4fdb4b2bba2 Merge: b1de3d6bd a76a8f80b Author: Alan Garny '' Date: Thu May 10 15:39:10 2018 +1200 SUNDIALS: upgraded to version 3.1.1 '(closes' '#1643).' commit a76a8f80b06896d6ea53f8de2b6bd86af452e1e9 Author: Alan Garny '' Date: Thu May 10 15:08:11 2018 +1200 'Don'\''t' build the SUNDIALS package only '(#1643).' commit 68dc3c4c4ccde23cb04f4662533e1057299c6f31 Author: Alan Garny '' Date: Thu May 10 15:06:48 2018 +1200 Slight update to our downloads page '(#1643).' commit ce680617ed4baba0701cd96ae6f43b0f622b0cfe Author: Alan Garny '' Date: Thu May 10 15:05:16 2018 +1200 SUNDIALS package: new binaries '(#1643).' commit 61d36104f8e924ddea14565a3628e6f67e57f758 Author: Alan Garny '' Date: Thu May 10 14:58:16 2018 +1200 SUNDIALS package: upgraded to version 3.1.1 '(#1643).' commit 6066f9c6dd2bd3403bf04a3bd1f50891d1cc1dbd Author: Alan Garny '' Date: Thu May 10 14:53:45 2018 +1200 SUNDIALS package: upgraded to version 3.1.1 '(#1643).' commit 6443a4b98870775560f7764eb45c1fc5dd79df49 Author: Alan Garny '' Date: Thu May 10 14:53:26 2018 +1200 Only build the SUNDIALS package '(#1643).' commit b1de3d6bd93e8186bafc542d4b7a1c7f4ea1cbec Merge: 83ea0188a 116f08456 Author: Alan Garny '' Date: Thu May 10 14:27:26 2018 +1200 Some minor changes needed to get OpenCOR to build on Ubuntu 18.04 LTS. commit 116f084564496daa721effceef8661360b600345 Author: Alan Garny '' Date: Thu May 10 13:50:04 2018 +1200 Properly deploy some system libraries on Linux. commit 11a75c15f353518d316317681acbcb7faf2796a5 Author: Alan Garny '' Date: Thu May 10 11:43:57 2018 +1200 Make sure that OpenCOR itself uses RPATH rather than RUNPATH on Linux. commit 608befcb9d6021c5121a0a668639113957ae1515 Author: Alan Garny '' Date: Thu May 10 11:27:10 2018 +1200 Make sure that our plugins use RPATH rather than RUNPATH on Linux. commit 3faee38fec527dcda5749ba63704d5870f3a8582 Author: Alan Garny '' Date: Wed May 9 20:12:16 2018 +1200 Prevent a deprecated warnings for the CellML API on Ubuntu 18.04 LTS. commit 2a62ea024548f89db086938a1552fe4e96c4e923 Author: Alan Garny '' Date: Wed May 9 19:40:31 2018 +1200 Renamed ULLONG_WIDTH to AttributeNumberWidth since 'it'\''s' defined by gcc on Ubuntu 18.04 LTS. commit 83ea0188ae5a007439cb9f7274dbcc117678570d Merge: f361f59b5 9e9eef6c9 Author: Alan Garny '' Date: Wed May 9 18:53:49 2018 +1200 Linux deployment: fixed an issue with version 55 of ICU being wrongly needed on some Linux systems '(closes' '#1627).' commit 9e9eef6c99bbf99c15b736091be411adb14180d4 Author: Alan Garny '' Date: Wed May 9 17:49:36 2018 +1200 Slight updates to the Oxygen library. commit f1434aa9b76c4ec054bb970737247f1a072652de Author: Alan Garny '' Date: Wed May 9 17:41:04 2018 +1200 Travis CI: now need JPEG and PNG '(#1627).' commit 2582d2ab4b3490a88476b68922249bf47677dd03 Author: Alan Garny '' Date: Wed May 9 17:17:43 2018 +1200 Slight update to our downloads page '(#1627).' commit bfb0112abde46bd27d9505abbf13c30a411bb067 Author: Alan Garny '' Date: Wed May 9 17:12:56 2018 +1200 Deploy JPEG and PNG on Linux '(#1627).' commit 22be2c13feeada02eec32ebb8480dfcd5ac183f7 Author: Alan Garny '' Date: Wed May 9 15:53:53 2018 +1200 Some minor cleaning up. commit c8c6b71f59c22c0564dc3ef924c017eaed0c4613 Author: Alan Garny '' Date: Wed May 9 15:30:01 2018 +1200 'Don'\''t' only build ICU and QtWebKit anymore '(#1627).' commit 99be0258dabc725b5084374e7fb4df15d65aa388 Author: Alan Garny '' Date: Wed May 9 14:58:45 2018 +1200 Some minor cleaning up. commit 80cf809f8203011031cb8164a0529efb0b03b624 Author: Alan Garny '' Date: Wed May 9 14:57:44 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 46ade0e707d4c89c3fe00f05f39568528b00c263 Author: Alan Garny '' Date: Wed May 9 14:41:27 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 3328dc4d852f3858c38ac294201522e0bc839eb6 Author: Alan Garny '' Date: Wed May 9 14:05:11 2018 +1200 ICU package: make sure that we can deploy it even when building it. commit 4eccef3969c841749af9d6db91bad9bd24e34dca Author: Alan Garny '' Date: Wed May 9 13:27:44 2018 +1200 Some minor cleaning up. commit 19273baca4c70e58514d2912898e2e531a75771d Author: Alan Garny '' Date: Wed May 9 11:49:02 2018 +1200 Revert part of commit 6640946. commit 6640946656aa85d7569e85ef65335900ebbf190f Author: Alan Garny '' Date: Wed May 9 11:37:31 2018 +1200 Make sure that ICU is handled before QtWebKit '(#1627).' commit 6a95bda16a1769e53dc34d41ba11a2f204a9d16c Author: Alan Garny '' Date: Wed May 9 11:36:19 2018 +1200 Some minor cleaning up. commit 457243c89cad47c41abdcf9c7e05284cae199877 Author: Alan Garny '' Date: Tue May 8 17:55:10 2018 +1200 QtWebKit package: fixed a small problem with the CMakeLists.txt file '(#1627).' commit b0def83ed8c276c6329c4520464e40a403b032f5 Author: Alan Garny '' Date: Tue May 8 17:47:22 2018 +1200 QtWebKit: new Linux binaries '(#1627).' commit 50bdfd9f4bc980884adbca07663d10513b1b355e Author: Alan Garny '' Date: Tue May 8 17:41:11 2018 +1200 Stop building QtWebKit only '(#1627).' commit c3e3816d159f2605091672883592a07d8d33537d Author: Alan Garny '' Date: Tue May 8 17:40:01 2018 +1200 QtWebKit: new Linux binaries '(#1627).' commit 79c2bc7a66a6c6c77cb5686c04bb4d63aa40ff75 Author: Alan Garny '' Date: Tue May 8 10:40:13 2018 +1200 Some minor cleaning up. commit fa1b3d872b82918f6545ae36be38403849458943 Author: Alan Garny '' Date: Tue May 8 07:42:01 2018 +1200 QtWebKit: new Windows and macOS binaries '(#1627).' commit b749ba632fe5d2bc46369bdaaa6c32473aac8546 Author: Alan Garny '' Date: Mon May 7 19:29:11 2018 +1200 QtWebKit package: use our copy of ICU on Linux '(#1627).' commit c21e2e0cccb05339e6174d35c5016192b5cdfb17 Author: Alan Garny '' Date: Mon May 7 14:11:33 2018 +1200 Some minor cleaning up. commit 48bfa322e85fcd217c1940ec4d17c0611a7b3037 Author: Alan Garny '' Date: Mon May 7 13:51:05 2018 +1200 Linux: make sure that we build/retrieve ICU before building/retrieving QtWebKit '(#1627).' commit 8c596e554b6d42c8bb742401f4ba361dc3d45323 Author: Alan Garny '' Date: Mon May 7 10:30:10 2018 +1200 Revert '"Some' minor cleaning 'up."' This reverts commit b2fa258764dc2cb90f0e142cdc957b669fbe7362. Argh, we actually need it for our OpenCOR-specific version of QtWebKit. $'It\342\200\231s' just that I made a mistake when creating the '`v5.212.0-alpha2-72cfbd7`' release by using the '`5.212`' target rather than our '`opencor`' one. commit b2fa258764dc2cb90f0e142cdc957b669fbe7362 Author: Alan Garny '' Date: Mon May 7 10:21:37 2018 +1200 Some minor cleaning up. Not sure why GIT_TAG was defined on Windows and, indeed, CMake told us that this manually-specified variable was not used by the project. commit 55dfbfbbb3fdefc8108dcd77c66cc42562228193 Author: Alan Garny '' Date: Mon May 7 10:05:52 2018 +1200 Using the latest commit of QtWebKit '(#1627).' commit 3ce0e167ba58c82b34dedc88e0280e4c47b4ca5f Author: David Brooks '' Date: Sun May 6 13:37:21 2018 +1200 Python: really 'don'\''t' update files in '`__pycache__`...' commit 7076296482ddec35661fb3301a70bc6d96dba995 Author: David Brooks '' Date: Sun May 6 10:07:49 2018 +1200 Graphs: 'don'\''t' set a 'line'\''s' '' in SED-ML file if the colour is invalid/missing. commit ff44e1ac7e6ccdcc0113e5b7aae1638e5ad5c19c Author: David Brooks '' Date: Sat May 5 21:39:57 2018 +1200 Python: 'don'\''t' decRef null array pointers '(dbrnz/opencor#15).' commit 9c694f1d5e6b2691f18f5ce809f7702a28486b41 Merge: d9eb8b134 f361f59b5 Author: David Brooks '' Date: Sat May 5 20:43:16 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit d9eb8b1342b2411baff56279f8f741f366b587e8 Author: David Brooks '' Date: Sat May 5 20:41:51 2018 +1200 Python: make sure our simulation run event loop quits. Possibly because we are running in the 'application'\''s' main thread, the '`exec()`' of the local event loop was not always exiting when we called the 'loop'\''s' quit slot. Emitting a signal to quit the loop is the proper way to do so. commit a821a3d80e2f7af6a21331173a9c446e27f691f9 Merge: 9376fd5f1 f361f59b5 Author: Alan Garny '' Date: Fri May 4 18:06:16 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit 66bf995e40cb930572352eab5a03d0845d6222fb Merge: e0ac8f0cc f361f59b5 Author: Alan Garny '' Date: Fri May 4 18:05:34 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit f361f59b5f05b582b9ef2e9d81b826246408463b Author: Alan Garny '' Date: Fri May 4 18:03:10 2018 +1200 QtWebKit library: prevent a warning from CMake. commit 9376fd5f1cf03ab4a78ff4d47b0e9cd1e301bf6a Author: Alan Garny '' Date: Fri May 4 18:01:18 2018 +1200 QtWebKit library: prevent a warning from CMake '(#1627).' commit 9c7641fd66bd437beabbdfa4f0f6d2a64534f45f Author: Alan Garny '' Date: Fri May 4 17:35:03 2018 +1200 Only build QtWebKit '(#1627).' commit 13b7454f142acaee0f2b98544e7d56ae6e8af3c7 Author: Alan Garny '' Date: Fri May 4 15:29:41 2018 +1200 For testing Jenkins. commit 0fe45e9e0870472b1670b37f0051e4530cf91b79 Author: Alan Garny '' Date: Fri May 4 15:29:32 2018 +1200 For testing Jenkins. commit 3a5db944e730c7d7062a4dbb5983b832765b13c5 Author: Alan Garny '' Date: Fri May 4 15:21:20 2018 +1200 For testing Jenkins. commit 4c864892fbe4031686a3b0608ae24bf6aaee1379 Author: Alan Garny '' Date: Fri May 4 15:21:05 2018 +1200 For testing Jenkins. commit 72499799ef074a3b748122e9b9514bf4da063a84 Merge: d4c04eed4 25c5801b8 Author: Alan Garny '' Date: Fri May 4 15:11:33 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit e0ac8f0cc102b49e051632ddc35c70f57ebb474a Merge: 874367573 25c5801b8 Author: Alan Garny '' Date: Fri May 4 15:11:01 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 25c5801b85956d8e426c022cc5f022301b9a01d9 Author: Alan Garny '' Date: Fri May 4 15:09:17 2018 +1200 Some minor cleaning up. commit d4c04eed4304714c0ff5882d695d067e26b63379 Merge: b5fdf70bf 9a7a3acbc Author: Alan Garny '' Date: Fri May 4 14:42:14 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit 8743675738a1aed9640fc38a685b3de09be066be Merge: ee6f23847 9a7a3acbc Author: Alan Garny '' Date: Fri May 4 14:41:34 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 9a7a3acbcb1a662206aa11f4836c12529aa30ba2 Merge: 2952b2d3f 90c5ab638 Author: Alan Garny '' Date: Fri May 4 14:40:33 2018 +1200 Some minor cleaning up. commit b5fdf70bf76e004acdddd632504bffe3cd29cb8f Author: Alan Garny '' Date: Fri May 4 14:10:32 2018 +1200 Some minor cleaning up. commit 90c5ab63890d748bd3d06420e1007d8c6e38af50 Author: Alan Garny '' Date: Fri May 4 14:08:45 2018 +1200 Some minor cleaning up. commit 8b2c5e09cfce147a52596548ddb08686d68f846d Merge: 2443c57ad 2952b2d3f Author: David Brooks '' Date: Fri May 4 13:19:27 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 1c40596846950890b2afbfd38ca36704165c9882 Merge: ff9813360 2952b2d3f Author: Alan Garny '' Date: Fri May 4 11:09:15 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit ee6f23847c244f352f7cf3df1a8428662ec9f82d Merge: 517383611 2952b2d3f Author: Alan Garny '' Date: Fri May 4 11:08:37 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 2952b2d3f42eb41fc12221c3b1de1dca32b6d827 Merge: 657e34f0d 5b16f9b3a Author: Alan Garny '' Date: Fri May 4 11:07:27 2018 +1200 Fixed various reproducible crashes '(closes' '#1630).' commit 5b16f9b3a8809d20d36e4b9017c5d0ad088a1d22 Author: Alan Garny '' Date: Fri May 4 10:29:15 2018 +1200 Some minor cleaning up. commit f87fedcd67a61ac5af6fda1e38390cb27ad89712 Author: Alan Garny '' Date: Fri May 4 10:18:15 2018 +1200 Some minor cleaning up. commit 7a4752a237188d12f2af027a18f118a8bb33b13d Author: Alan Garny '' Date: Fri May 4 10:17:20 2018 +1200 Some cleaning up. In the end, because of what we did for issue '#1630,' we $'don\342\200\231t' need to decide whether we want an elapsed time to be computed or not when asking for a simulation to stop. commit 39d341655117ab2f87a883aae3f8a3fb2fd4f7ee Author: Alan Garny '' Date: Fri May 4 10:11:51 2018 +1200 Some minor cleaning up. commit 8e4b0c25503fecea99a56dc7aadbda9379c06d8e Author: Alan Garny '' Date: Fri May 4 09:52:37 2018 +1200 Simulation Experiment view: prevent the second crash in issue '#1630.' commit b7a9f623a9a73d61cad960268f6b30e714b54919 Author: Alan Garny '' Date: Thu May 3 18:48:32 2018 +1200 Some minor cleaning up. commit 9e8e58d563021ffe4f260859775c759d0472216e Author: Alan Garny '' Date: Thu May 3 18:03:49 2018 +1200 Some minor cleaning up. commit 60f8b53dcb2d822ee09ed843fc457e7aadf3579e Author: Alan Garny '' Date: Thu May 3 18:03:15 2018 +1200 Some minor cleaning up. commit fe30413665626a08331371478d5941df45e3822f Author: Alan Garny '' Date: Thu May 3 18:02:52 2018 +1200 Simulation Experiment view: prevent the fourth crash in issue '#1630.' commit 40bd885ce0e687587a26418f9dc047eea42b7e9b Author: Alan Garny '' Date: Thu May 3 17:59:17 2018 +1200 Some minor cleaning up. commit ce19ce381c272fdfbe9d0cfc8eccb319a0a38749 Author: Alan Garny '' Date: Thu May 3 16:21:45 2018 +1200 Simulation support: actually wait for our worker thread to be done when asking our simulation to stop '(#1630).' commit 055ac53356aa7d4539b146fb911e5d750d3b80f8 Author: Alan Garny '' Date: Thu May 3 15:12:07 2018 +1200 Simulation Experiment view: prevent the third crash in issue '#1630.' commit 7d768fc16b3cd3a55189b3ecae7fc19f1534ac92 Author: Alan Garny '' Date: Thu May 3 15:03:10 2018 +1200 Simulation Experiment view: make sure that a simulation is stopped when a saved file is to be considered as reloaded '(#1630).' commit a309360a5461bdf9eeeea28015cdbcc98fc3d397 Author: Alan Garny '' Date: Thu May 3 13:29:28 2018 +1200 CellML support: have '`CellmlFile::runtime()`' always return a brand new runtime '(#1630).' The idea is that whoever calls '`CellmlFile::runtime()`' is responsible for deleting that runtime once $'it\342\200\231s' done with it. commit 788fb8bafb548718d836a7025fe4dcbb99a83c7b Author: Alan Garny '' Date: Thu May 3 11:35:56 2018 +1200 Removed our Simulation interface since we 'don'\''t' need it anymore '(thanks' to commit 'bd5ab3f;' '#1630).' commit bb86b4c5530ec85e254fff36792d6aca2eedb0be Author: Alan Garny '' Date: Thu May 3 11:29:23 2018 +1200 Some minor cleaning up. commit 2b522b444213aaa4cb5c69f871d36ca9a09a0221 Author: Alan Garny '' Date: Thu May 3 11:28:27 2018 +1200 Removed our Simulation interface since we 'don'\''t' need it anymore '(thanks' to commit 'bd5ab3f;' '#1630).' commit f4fd1c73ed73e019c465e25fa7dd1738956679a8 Author: Alan Garny '' Date: Thu May 3 11:25:33 2018 +1200 Removed our Simulation interface since we 'don'\''t' need it anymore '(thanks' to commit 'bd5ab3f;' '#1630).' commit bd5ab3f99b699887c5e5a97fa7e84b63a148ab0e Author: Alan Garny '' Date: Thu May 3 11:17:40 2018 +1200 CellML support: have '`CellmlFile::runtime()`' always return a brand new runtime '(#1630).' The idea is that whoever calls '`CellmlFile::runtime()`' is responsible for deleting that runtime once $'it\342\200\231s' done with it. commit 283808ba5040dd5a385ab4eeefa48d66b9533b24 Author: Alan Garny '' Date: Thu May 3 10:51:37 2018 +1200 Some minor cleaning up. commit a7ff1b7cbee63acfec1810b91be4be34a89b329d Merge: 71345a009 657e34f0d Author: Alan Garny '' Date: Thu May 3 10:28:01 2018 +1200 Merge branch ''\''master'\''' into issue1630. commit ff981336099bbe6417d061897ead2f0568cb616a Merge: f07f82499 657e34f0d Author: Alan Garny '' Date: Thu May 3 10:27:22 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit 517383611df2ce32c1f3de0ec70493dcdd4de106 Merge: 4cbe06e4d 657e34f0d Author: Alan Garny '' Date: Thu May 3 10:26:42 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 657e34f0d4e9ddb4f34662988f524087b449e45c Merge: b245b999a 9900b4ba7 Author: Alan Garny '' Date: Thu May 3 10:25:44 2018 +1200 macOS: added support for exiting full-screen mode when pressing the Esc key '(closes' '#1637).' commit 71345a009eeb56f7a6088ae57f18c2191cb39af5 Author: Alan Garny '' Date: Thu May 3 10:13:19 2018 +1200 Some minor cleaning up. commit 9900b4ba7a8ad8adf7cd7a6cd8f191322e0f661f Author: Alan Garny '' Date: Thu May 3 09:44:55 2018 +1200 Slight update to our downloads page '(#1637).' commit e3f8fa2f7b6270dbed3d36c6d8fd06fd517840e8 Author: Alan Garny '' Date: Thu May 3 09:43:36 2018 +1200 macOS: added support for exiting full-screen mode when pressing the Esc key '(#1637).' commit a6ca92678bda36056699c01af60a837ab53f211b Author: Alan Garny '' Date: Wed May 2 18:03:03 2018 +1200 Simulation Experiment view: $'don\342\200\231t' consider a SED-ML file as modified under certain conditions '(#1626).' commit 609b4d5cb341f9e0d23e8f3f6e7d1da1ad1059e5 Author: Alan Garny '' Date: Wed May 2 15:31:00 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours. Indeed, when running the model in issue '#1630,' the X axis of the first graph panel was flashing on macOS for a bit before becoming '"stable",' due to our call to 'xScaleWidget->setMinBorderDist(0,' '0).' So, we had to find another way of doing things without that call... commit 0ba67a863e42b14b3bf020b5aa5bd7eb9993f4fb Author: Alan Garny '' Date: Wed May 2 14:39:07 2018 +1200 Revert '"Graph' Panel widget: improved the alignment of a graph panel with its neighbours on 'macOS."' This reverts commit c927305cc668a4b5aeb1c05f5ae127db59f2abf6. commit 2443c57ad650b4511b16f69c3b168a9a3cc239ea Merge: adffe9cde b245b999a Author: David Brooks '' Date: Wed May 2 13:10:06 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit adffe9cde78fd25887b7acb5ade7e3e830dc35ca Author: David Brooks '' Date: Wed May 2 13:02:24 2018 +1200 Graphs: use an invalid colour value to indicate that we calculate the plot line colour. commit c927305cc668a4b5aeb1c05f5ae127db59f2abf6 Author: Alan Garny '' Date: Wed May 2 12:51:26 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours on macOS. Indeed, when running the model in issue '#1630' on macOS, the X axis of the first graph panel was flashing for a bit before becoming '"stable".' This was due to us calling 'xScaleWidget->setMinBorderDist(0,' '0),' which unlike our call to 'yScaleDraw->setMinimumExtent(0.0),' we $'don\342\200\231t' seem to need to properly align our graph panels '(at' least, on 'macOS).' commit af9451ef86e8c3c11d2d6c81e2c2fc2f4b2d6d13 Author: Alan Garny '' Date: Wed May 2 12:48:27 2018 +1200 Revert '"Graph' Panel widget: improved the alignment of a graph panel with its 'neighbours."' This reverts commit 9920ff9a07c903c8900154eb68ca1eb9702bee5d. commit 9920ff9a07c903c8900154eb68ca1eb9702bee5d Author: Alan Garny '' Date: Wed May 2 12:01:52 2018 +1200 Graph Panel widget: improved the alignment of a graph panel with its neighbours. Indeed, when running the model in issue '#1630,' the X axis of the first graph panel was flashing for a bit before becoming $'\342\200\234stable\342\200\235.' This was due to us calling 'xScaleWidget->setMinBorderDist(0,' '0),' which unlike our call to 'yScaleDraw->setMinimumExtent(0.0),' we $'don\342\200\231t' seem to need to properly align our graph panels. commit 3b86e142f58bfcd45b9e582e495233188ee2167c Author: David Brooks '' Date: Wed May 2 11:00:59 2018 +1200 Graphs: keep different graph colours when info is updated. commit 94b0dc5c863613e1b6166fdb53ca6174289af474 Author: David Brooks '' Date: Wed May 2 10:59:22 2018 +1200 Python: 'don'\''t' look in '`__pycache__`' directory when updating scripts. commit 74c127ff82bb88c6fdf0ac4299e2159072a62718 Author: Alan Garny '' Date: Wed May 2 09:06:23 2018 +1200 Simulation Experiment view: only update our progress bar or our tab icon if needed '(#1630).' commit a6b822a0b3350214360fcbae89c132fa01c7f359 Author: Alan Garny '' Date: Tue May 1 17:32:10 2018 +1200 Simulation support: properly handle the generation of elapsed time '(#1630).' commit 70e44656a7cd1b5f04d406a2dc0c80530210baf6 Author: David Brooks '' Date: Tue May 1 17:28:14 2018 +1200 Python: skip sub-directories when updating scripts. commit e0679318a5af32bf3b20b8062e1d09c27fde0d2b Author: David Brooks '' Date: Tue May 1 15:23:19 2018 +1200 Python: re-enable gradient calculation code. commit ae461947e28ed584570b2f73b857f1ceaf8ef2df Author: Alan Garny '' Date: Tue May 1 17:05:04 2018 +1200 Simulation Experiment view: a simulation 'shouldn'\''t' be stopped by the Simulation Experiment view '(#1630).' When a simulation needs to be stopped, it should be stopped before doing anything else '(e.g.' reloading a 'file)' since $'it\342\200\231s' run in its own thread. So, anything else will result in a potential crash of OpenCOR. This is the reason we now stop a simulation from within our central widget. commit e5753716a9342478b080c83978038c26798ed0f7 Author: Alan Garny '' Date: Tue May 1 16:12:52 2018 +1200 Simulation support: we should really not have to reset our various arrays in 'SimulationData::deleteArrays().' Indeed, we should only ever come here once, $'so\342\200\246' commit 72f0c7eb65f55a9b09720119b6ac7405c98a842a Author: Alan Garny '' Date: Tue May 1 16:10:28 2018 +1200 Simulation support: make sure that we have a data store before returning our number of runs '(#1630).' This is needed, for example, when a simulation was running and then we reloaded a SED-ML file as a result of its corresponding CellML file having been modified. commit 9b9e72103a34e7882a59eefb47b33577da2ad90f Author: Alan Garny '' Date: Tue May 1 15:56:15 2018 +1200 Simulation support: simplified our Simulation interface and put back our handling of the File Handling interface '(#1630).' Indeed, the only thing we need to do '(and' should be 'doing)' as soon as possible is stop the simulation. Once this is done, we can retrieve our file details when a SED-ML/CellML file has been reloaded. To retrieve our file details just after stopping a simulation will result in our file details being wrong since a SED-ML/CellML file will have reloaded yet. commit 1c25d8151dc13ea355e30fd754143b44d2981265 Author: David Brooks '' Date: Tue May 1 14:56:36 2018 +1200 Python: update starting/ending point and interval when changed in Python. commit 2e3efffb311f2717100ffaaa2dd5fba1e7587299 Merge: c7ac2deab b245b999a Author: Alan Garny '' Date: Tue May 1 14:29:29 2018 +1200 Merge branch ''\''master'\''' into issue1630. commit f07f82499e92e531f3f6385f792dcbb8d3d1b624 Merge: 1e1063afa b245b999a Author: Alan Garny '' Date: Tue May 1 14:28:53 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit 4cbe06e4de90d1e82a3206d255b31cc8313ae6b2 Merge: eefc5462a b245b999a Author: Alan Garny '' Date: Tue May 1 14:28:11 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit b245b999aad26b7af9cd1b66ec8ed68ede270f7f Merge: e03d46fb1 a0feca9bf Author: Alan Garny '' Date: Tue May 1 14:22:21 2018 +1200 Python: updated pip to version 10.0.1. commit a0feca9bf039deac996450d93e1a97c3615a162d Author: David Brooks '' Date: Tue May 1 13:49:55 2018 +1200 Python: update pip to version 10.0.1 commit e03d46fb10d4102a55a2a5163335e3f08b62a0e7 Author: Alan Garny '' Date: Tue May 1 13:15:42 2018 +1200 For testing Jenkins. commit 41449bcc3c8cb6919ae71a7a87cf3b75a5d3389d Author: Alan Garny '' Date: Tue May 1 13:12:21 2018 +1200 For testing Jenkins. commit 31af9048a60c0c5baf91a4e69239e1d0c78ed9de Author: David Brooks '' Date: Tue May 1 12:53:37 2018 +1200 Python: update pre-built packages for Linux. commit 5055129720883e2bfef7d4f8fb495edbd92c7c1b Author: David Brooks '' Date: Tue May 1 11:17:27 2018 +1200 Python: update pre-built packages. commit 058561de9b8628c4ce6c6ee94032627bf8e3133f Author: David Brooks '' Date: Tue May 1 10:54:11 2018 +1200 Python: update '`pip`' to version 10.0.1 and use official '`pypa`' repositories for Python packaging tools. commit c7ac2deabc68b67dadb85205ad36a695db905d33 Author: Alan Garny '' Date: Mon Apr 30 18:17:37 2018 +1200 Simulation Support plugin: removed our handling of the File Handling interface '(#1630).' commit ec44d1f374bc6d10dade839808011e4bd9c438b7 Author: Alan Garny '' Date: Mon Apr 30 18:16:51 2018 +1200 Central widget: get our Simulation Support plugin to save/rename/reload a file before our file manager '(#1630).' commit e78cc0b26b43fe7cfd811368b71d4fa6581f886a Author: Alan Garny '' Date: Mon Apr 30 18:11:45 2018 +1200 Simulation Support plugin: removed our handling of the File Handling interface '(#1630).' commit 073babedc85acfdbbc94b004fe0f91d2876aad94 Author: Alan Garny '' Date: Mon Apr 30 18:10:13 2018 +1200 Now track our Simulation Support plugin '(#1630).' commit 3d2728f9b3ad8c9bc4375844134081e21e081033 Author: Alan Garny '' Date: Mon Apr 30 16:29:02 2018 +1200 Main window: slight improvement to the way we use the Core plugin. commit 6a2ff90799fee28aaf5ba8d6bb21d38ef4fdafdd Author: Alan Garny '' Date: Mon Apr 30 16:26:37 2018 +1200 Some minor cleaning up. commit 139c46e146be83c2e40f75d114b16daf2459657c Author: Alan Garny '' Date: Mon Apr 30 16:07:34 2018 +1200 Some minor cleaning up. commit 4032c43525892075e128e5faf4168ab5cfc9be2f Author: Alan Garny '' Date: Mon Apr 30 11:48:44 2018 +1200 Core plugin: some minor improvement to the reloading of a file. commit 1acdf7741eefc6a2f8d5f776c0d438eef536cac8 Author: David Brooks '' Date: Sun Apr 29 12:13:44 2018 +1200 Python: tidyup CMake code commit 27059aafd13c6b989ea59106beeaa31b9bbb7454 Author: David Brooks '' Date: Sun Apr 29 12:12:36 2018 +1200 CMake: optionally specify byproducts of copying files in '`add_plugin`' commit 978c45f8275af193f58e1568734a426919ab210b Author: David Brooks '' Date: Sun Apr 29 12:09:16 2018 +1200 CMake: export the target that '`add_plugin`' uses to copy files. commit e4e160f972f6d4872b52027911ae32c165780d03 Merge: 443380262 31b4adc64 Author: David Brooks '' Date: Sat Apr 28 20:19:19 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit eefc5462a8e232d50b0a5f0107cd14e9d03d92a9 Merge: 3945cd8c7 31b4adc64 Author: Alan Garny '' Date: Fri Apr 27 17:23:05 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 31b4adc6408d3a09263e9bf35cbe32adea671055 Merge: dde9cdef5 191cab73e Author: Alan Garny '' Date: Fri Apr 27 17:19:59 2018 +1200 Closes '#1626' and closes '#1633.' commit 191cab73edd789a3b0db3511d11e47a508fe454e Author: Alan Garny '' Date: Fri Apr 27 16:47:01 2018 +1200 Slight updates to our downloads page '(#1626' and '#1633).' commit acc466b3dbacf7f86a4955c9efc11d667346a2f8 Author: Alan Garny '' Date: Fri Apr 27 16:41:14 2018 +1200 Core plugin: fixed a problem with menu items in the File '|' Reopen menu potentially appearing as disabled '(#1633).' commit d890eccf7f14a936d953ad4a680ea242045eafc1 Author: Alan Garny '' Date: Fri Apr 27 15:14:05 2018 +1200 Some minor cleaning up. commit 1e1063afa5c4b38f01986e35c3e94b805d246ca2 Merge: 5aeb433f7 dde9cdef5 Author: Alan Garny '' Date: Fri Apr 27 11:29:04 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit 3945cd8c7d185e5b83c1a6816316b19bd7ddafc7 Merge: fe85e2e28 dde9cdef5 Author: Alan Garny '' Date: Fri Apr 27 11:28:35 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit a0eac10364340d6a7f169b7ba80f4de7ddcff612 Merge: a7a9f8d76 dde9cdef5 Author: Alan Garny '' Date: Fri Apr 27 11:28:18 2018 +1200 Merge branch ''\''master'\''' into issue1626. commit dde9cdef53d182a9e746f48167075a1a43a0e847 Author: Alan Garny '' Date: Fri Apr 27 11:26:39 2018 +1200 libSBML: updated our Linux binary. Argh, the previous commit was unnecessary. I 'hadn'\''t' pulled the latest changes, which is why the SHA-1 value was wrong... since it was out of 'sync...!' commit a7a9f8d7621daf068b5f947d64e99a289ed94859 Author: Alan Garny '' Date: Fri Apr 27 10:47:39 2018 +1200 Core plugin: slight improvement to our 'CorePlugin::updateFileReopenMenu()' method. commit a1294d9ff2d39ed912bc84ecc257729f96f6c45f Author: Alan Garny '' Date: Fri Apr 27 10:41:07 2018 +1200 Core plugin: slight improvement to our 'CorePlugin::updateFileReopenMenu()' method. commit 9b002d4adddf14027bf0c1ee80c1d0d1dd23821a Author: Alan Garny '' Date: Fri Apr 27 10:37:25 2018 +1200 Some minor cleaning up. commit 48109bbc143dd067d1f42e7c05e77f5f0a23ce98 Author: Alan Garny '' Date: Fri Apr 27 10:33:51 2018 +1200 libSBML: updated our Linux binary. Hmm, somehow, its SHA-1 value was 'wrong?...' commit 30054785faa1a8097cff1832b1425c003b74c9f5 Author: Alan Garny '' Date: Thu Apr 26 17:44:42 2018 +1200 Simulation Experiment view: $'don\342\200\231t' consider a SED-ML file as modified under certain conditions '(#1626).' commit 5aeb433f7b107e211758d6bae34fb882cd4e1e10 Merge: e07535bfc f19736827 Author: Alan Garny '' Date: Thu Apr 26 16:37:52 2018 +1200 Merge branch ''\''master'\''' into issue1627. commit fe85e2e289a95cda2165d0621e338f4e84d60062 Merge: bc3ee568d f19736827 Author: Alan Garny '' Date: Thu Apr 26 16:36:27 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit f19736827f0efd2d03c75fb230d209fefac621b4 Merge: 58b75f572 a5c33eeea Author: Alan Garny '' Date: Thu Apr 26 16:35:04 2018 +1200 SBML API: 'don'\''t' build libSBML with bzip2 or zip compression anymore '(closes' '#1628).' commit a5c33eeea7c65d0391964042d3f8df218c22abd9 Author: Alan Garny '' Date: Thu Apr 26 16:00:35 2018 +1200 Slight update to our libSBML tests '(#1628).' commit bf1500784fbda040f723c772a01e0ed8d74e287e Author: Alan Garny '' Date: Thu Apr 26 15:22:57 2018 +1200 Slight updates to our downloads pages '(#1628).' commit 0863988c45ea44da67ff8e4c6d958d6ef47a38b2 Author: Alan Garny '' Date: Thu Apr 26 15:21:46 2018 +1200 'Don'\''t' only build libSBML '(#1628).' commit 2801868c25bd833b92ca744b355f5d77825210f3 Author: Alan Garny '' Date: Thu Apr 26 15:21:26 2018 +1200 libSBML: new binaries '(#1628).' commit ad22a2fbb9407c98468ba3d7a8b12e607e2c4d00 Author: Alan Garny '' Date: Thu Apr 26 15:01:00 2018 +1200 Linux: no need to ship bzip2 anymore '(#1628).' commit 2968479344e1d77e9b6eead26f34b912ffc18fa2 Author: Alan Garny '' Date: Thu Apr 26 15:00:25 2018 +1200 libSBML: 'don'\''t' build with bzip2 and zlib support '(#1628).' commit 8e281e23660522d5a912366ee729618c7930f585 Author: Alan Garny '' Date: Thu Apr 26 14:58:07 2018 +1200 Only build libSBML '(#1628).' commit e07535bfcb396a959c4d481a12d01138e2dbac88 Author: Alan Garny '' Date: Thu Apr 26 13:26:11 2018 +1200 Reverting most of d02504a, b94d322 and 7f5b6c3. commit 7f5b6c31e399aab739bd1432a2cafe1acfb50855 Author: Alan Garny '' Date: Thu Apr 26 13:18:21 2018 +1200 CMake: execute the packaging related code only if really needed. commit b94d3223f6fc21a3e3f3162593467cc67a830db7 Author: Alan Garny '' Date: Thu Apr 26 13:16:01 2018 +1200 CMake: execute the packaging related code only if really needed. commit d02504aa97a26c84fad0ee3163ebd75f06d82aff Author: Alan Garny '' Date: Thu Apr 26 13:11:43 2018 +1200 CMake: execute the packaging related code only if really needed. commit dfc77be4f737d56b59ce7a2caad2ca77ce970544 Author: Alan Garny '' Date: Tue Apr 24 17:50:37 2018 +1200 Make sure that ICU '(and' Mesa while we are at 'it)' is available before we build ICU-dependent libraries '(e.g.' 'o2).' Also deploy our copy of ICU on Linux '(#1627).' commit 12fd462bf1a3db9f7b0b7f1119da241b2c3af317 Author: Alan Garny '' Date: Tue Apr 24 17:47:53 2018 +1200 ICU package: make sure that we can retrieve our PKGCONFIG directory '(#1627).' commit 3fbf05772248cee4549d79a0550c267918428e23 Author: Alan Garny '' Date: Tue Apr 24 17:36:53 2018 +1200 ICU package: make sure that we can retrieve our list of ICU libraries '(#1627).' commit 9d387f7b634b0032d70b070f1d448e49c9ef252f Author: Alan Garny '' Date: Tue Apr 24 17:26:28 2018 +1200 'Don'\''t' build ICU anymore '(#1627).' commit a83c48356d071de72f1ec1c79d7ab88a1a1a469a Author: Alan Garny '' Date: Tue Apr 24 17:14:44 2018 +1200 Built our own copy of ICU on Linux '(#1627).' commit 3b038c9ce21a000a2ab2450b7c0a83120e74c7aa Author: Alan Garny '' Date: Tue Apr 24 17:08:57 2018 +1200 Built our own copy of ICU on Linux '(#1627).' commit d8fd939e25faef64462819f508eb67b3cf775219 Author: Alan Garny '' Date: Tue Apr 24 17:05:43 2018 +1200 Build our own copy of ICU on Linux '(#1627).' commit 23410805805847d9a09b84c1833c4058ca1a7e76 Author: Alan Garny '' Date: Tue Apr 24 16:53:45 2018 +1200 Build our own copy of ICU on Linux '(#1627).' commit bbc7886d3a2eb6d18b1618d73b414773a30852dc Author: Alan Garny '' Date: Tue Apr 24 16:16:59 2018 +1200 Build our own copy of ICU on Linux '(#1627).' commit 0cb730d2868d1af36032e640d7bc7f098b4bd5b0 Author: Alan Garny '' Date: Tue Apr 24 16:11:47 2018 +1200 Build our own copy of ICU on Linux '(#1627).' commit 2bf11663b43bf2472a540077178fcb2761c4c1f4 Author: Alan Garny '' Date: Tue Apr 24 16:11:24 2018 +1200 Build our own copy of ICU on Linux '(#1627).' commit 482f14434a91f1caac6e76c51a4c84efd4145174 Author: Alan Garny '' Date: Tue Apr 24 16:07:06 2018 +1200 Building our own copy of ICU on Linux '(#1627).' commit f51a554e06756943186ac627c902ffc4ee7898e0 Author: Alan Garny '' Date: Tue Apr 24 15:00:22 2018 +1200 Only build OAuth '(#1627).' commit 1b9544214481c96d58174975eeb5333821e9c916 Author: Alan Garny '' Date: Tue Apr 24 15:00:03 2018 +1200 Some minor cleaning up. commit 58b75f572e1a2404c864773f4182c52799c475a4 Merge: 7937ca9b2 c4e3e8471 Author: Alan Garny '' Date: Mon Apr 23 18:34:05 2018 +1200 New snapshot. commit c4e3e8471fda6109b3cb5c1601096ecc91fdcec6 Author: Alan Garny '' Date: Mon Apr 23 18:05:20 2018 +1200 New snapshot. commit 449fe4e66a35ff81ec0a8505e06043af0d2ffa21 Author: Alan Garny '' Date: Mon Apr 23 18:03:09 2018 +1200 Simulation support: improved 'stability...?' This is related to issue '#1574' where some random crashes at the beginning of 'SimulationData::deleteArrays(),' i.e. when trying to free up 'mConstants…!?' commit 3230399052ad14d2df76b9c3586355de4ece6f26 Author: Alan Garny '' Date: Mon Apr 23 17:39:21 2018 +1200 Graph Panel widget: prevent a graph panel from becoming black. commit bc3ee568d9ed7b88d94aa738103facb8c8d77140 Merge: ed56119d9 7937ca9b2 Author: Alan Garny '' Date: Mon Apr 23 13:12:02 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 7937ca9b22656d3fa87219db369dd32d73c6b373 Merge: ae667ffaa 485982b91 Author: Alan Garny '' Date: Mon Apr 23 13:10:28 2018 +1200 Graph Panel widget: fixed a problem with graph panels not always being properly aligned '(closes' '#1619).' commit 485982b9151f7964d6ff33b8dfd072b1057bee1e Author: Alan Garny '' Date: Mon Apr 23 12:03:17 2018 +1200 Slight update to our downloads page '(#1619).' commit 18e99c66a0a7cded060ce9b59f01b5f632887353 Author: Alan Garny '' Date: Mon Apr 23 11:49:16 2018 +1200 Graph Panel widget: prevent some flashing of the X axis on Windows and Linux '(#1619).' commit 617f4ee1ebc8c9af16b4734a3e4b6af319496754 Author: Alan Garny '' Date: Mon Apr 23 11:04:04 2018 +1200 Simulation Experiment view: make sure that our legend is of the right width when changing a 'graph'\''s' title '(#1619).' commit 4b1e1657db9a813fe9e9ffd2220dc81f6b1e5abb Author: Alan Garny '' Date: Thu Apr 19 18:55:01 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 28e18bc33ee3a520bc864abc63998bbbfb544cb4 Author: Alan Garny '' Date: Thu Apr 19 18:40:59 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 17d9226cbce48d3ba86bf2519f3cf301749ee5fa Author: Alan Garny '' Date: Thu Apr 19 18:25:58 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit e8ea3c1f4f20d8ccd72bf18f3483cfc3af5c0ba8 Author: Alan Garny '' Date: Thu Apr 19 18:22:49 2018 +1200 Some minor cleaning up. commit 53b30734213391bf5a3f0c4d12873bc9365ea3c3 Author: Alan Garny '' Date: Thu Apr 19 18:04:13 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit a8042cfda80b415a74122a10d765aeb13b7e82fb Author: Alan Garny '' Date: Thu Apr 19 17:44:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit ff5671b5e71c9721774821cfab88f745fe4aec13 Author: Alan Garny '' Date: Thu Apr 19 17:40:27 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit e4f67f68dbb78d6a3bdca0ab74a166027402ee34 Author: Alan Garny '' Date: Thu Apr 19 17:39:17 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 15417cf2818d4cccd2df08fb5b5ea99d5a9d8b4e Author: Alan Garny '' Date: Thu Apr 19 16:55:21 2018 +1200 Graph Panel widget: only allow zooming in/out using the wheel when over the canvas. commit fa176653b3ca02fc780b11a0f40ddeab8d1cf800 Author: Alan Garny '' Date: Thu Apr 19 15:56:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit e6f188b0b6b7bb49eaa5661e52d207df0aa06ed3 Author: Alan Garny '' Date: Thu Apr 19 15:18:28 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 3187db6f0951c5cc649d069495540834731c9e16 Author: Alan Garny '' Date: Thu Apr 19 15:01:47 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit bf2559d996dfc1fcc63bf11636b162cee51be146 Author: Alan Garny '' Date: Thu Apr 19 14:55:49 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 067dafa3e7b6ff9de566da8f3b48322baf2c639d Author: Alan Garny '' Date: Thu Apr 19 14:45:00 2018 +1200 Some minor cleaning up. commit c5c4a07b7fdc35dcfb6093191e93e33eaa66eed6 Author: Alan Garny '' Date: Thu Apr 19 11:00:14 2018 +1200 Some minor cleaning up. commit d285e3b5190eba9eb30b7befcf9d0fee9f4452d4 Author: Alan Garny '' Date: Thu Apr 19 10:16:19 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit 443380262a3019a33019934891c7e10d85653421 Author: David Brooks '' Date: Wed Apr 18 20:23:06 2018 +1200 Python: Windows and Linux builds also need QtQuickWidgets. commit 9ad606255ce802d35fa11c24171e3cd3b91ac191 Author: Alan Garny '' Date: Wed Apr 18 18:36:06 2018 +1200 Merge branch ''\''master'\''' into issue1619. commit bc1233bdbad486290a82b0dbbcd4eda8d04ee03c Author: Alan Garny '' Date: Wed Apr 18 18:33:19 2018 +1200 Merge branch ''\''master'\''' into issue1619. commit 53bc89d1a45343e806f93584a7d37dbb57cee186 Merge: 023d39afa ae667ffaa Author: Alan Garny '' Date: Wed Apr 18 18:30:55 2018 +1200 Merge branch ''\''master'\''' into issue1619. commit ed56119d9c0ec41ce500762b6b0369aa46d09202 Merge: 61b18f730 ae667ffaa Author: Alan Garny '' Date: Wed Apr 18 18:27:44 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit ae667ffaaacc9dfc29902be6c02a0792c33e2d16 Merge: 9dde3e71a 022d71c0c Author: Alan Garny '' Date: Wed Apr 18 18:27:04 2018 +1200 Some minor cleaning up. commit 022d71c0c8f73e675ba8597f73fbf32a3675a9e9 Author: Alan Garny '' Date: Wed Apr 18 17:57:20 2018 +1200 CSV data store: make sure that a value actually exists before retrieving it. We have a Q_ASSERT which was triggered when exporting some simulation '(running' noble_1962_local.sedml for 3000 ms and then 30000 'ms)' to CSV using the debug version of OpenCOR '(in' Qt 'Creator).' The release version was '(somehow)' working fine, but we were definitely trying to retrieve a non-existing array value, which could have bitten us at some $'point\342\200\246' commit b8a996a15142e57ed51ef774fbf31cae6598e111 Author: Alan Garny '' Date: Wed Apr 18 16:38:48 2018 +1200 Common widget: only allow for events to be processed if our 'parent'\''s' updates are enabled '(#1622).' commit 6d6c8f45e5e039424580f365937d7ec3602522ff Author: Alan Garny '' Date: Wed Apr 18 16:37:53 2018 +1200 Make sure that we always use our in-house 'processEvents()' method. commit 023d39afa14b383dff82b87a922beae97c79ae66 Author: Alan Garny '' Date: Wed Apr 18 16:01:46 2018 +1200 Merge branch ''\''master'\''' into issue1619. commit 61b18f730801fc0404fa0e9e99eb0a9144dbcd6d Merge: e82ca714e 9dde3e71a Author: Alan Garny '' Date: Wed Apr 18 15:59:09 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 9dde3e71a09570f7c2d04f83ff1af1e1ba6f03cd Merge: 50cb55dae 86050e5d9 Author: Alan Garny '' Date: Wed Apr 18 15:57:04 2018 +1200 Simulation Experiment view: fixed a problem with legend labels not always being right '(closes' '#1620).' commit 86050e5d9bda47438c373893fde420b5f5e8aa96 Author: Alan Garny '' Date: Wed Apr 18 15:21:03 2018 +1200 Slight update to our downloads page '(#1620).' commit d8f7f9bbefa8105004778f3fa3b7456605390060 Author: Alan Garny '' Date: Wed Apr 18 14:32:49 2018 +1200 Simulation Experiment view: improved the rendering of the GUI upon adding a graph '(#1620).' commit 9ec7a7ca9369f2fb72d405f2b466c217aef18b68 Author: Alan Garny '' Date: Wed Apr 18 12:55:12 2018 +1200 Some minor cleaning up. commit 3752d4907d19609b7b70357926a80a7a3956b8c0 Author: Alan Garny '' Date: Wed Apr 18 12:50:24 2018 +1200 Graph Panel widget: have our legend widget track our main legend labels '(#1620).' Indeed, for each run, a legend label is created, but we only want to show our main legend labels, i.e. the ones associated with our dummy run. commit 8053a6472e4b0fe0bc1fc834b149042a2107c62e Author: David Brooks '' Date: Wed Apr 18 12:18:07 2018 +1200 Python: disable call-tips in IPython console. commit 4aaa35b6e064b068ec5718f352bb0ee452edef7c Author: David Brooks '' Date: Wed Apr 18 12:15:19 2018 +1200 Python: update pre-built PythonPackages for Windows. commit 021fd8443adfb4c3bff96d944c2453b96dab1ed3 Author: David Brooks '' Date: Wed Apr 18 11:08:48 2018 +1200 Python: allow for no '`bz2`' package when importing matplotlib. commit 24dfa7d06417885e194d68685e4a6901ac3f7294 Author: Alan Garny '' Date: Wed Apr 18 10:48:34 2018 +1200 Some minor cleaning up. commit db062d461b534de8bbd2d2e5187920d31af60367 Author: David Brooks '' Date: Wed Apr 18 09:06:04 2018 +1200 Graphs: use a different graph colour for each simulation run. commit 98b406587fe062b6bdf1ca1c9c002f060e05e9c1 Author: David Brooks '' Date: Tue Apr 17 21:56:25 2018 +1200 Python: update documentation. commit a514059045f708df9367a7e892963c6ee22fd17f Author: David Brooks '' Date: Tue Apr 17 21:56:05 2018 +1200 Python: 'DataStoreVariable::values()' is wrapped for Python. commit 95f9840411500ca818886803406cb019882278cc Author: David Brooks '' Date: Tue Apr 17 21:54:35 2018 +1200 Python: Try to keep keyboard focus when we run a simulation. commit b9ffd3c503b64379d262253a77a1d5ecdc45c3eb Author: David Brooks '' Date: Tue Apr 17 21:53:31 2018 +1200 Python: tidy code. commit f225158cb054fd62206a9171aa6152b298c6f68e Author: David Brooks '' Date: Tue Apr 17 20:14:22 2018 +1200 Python: get PythonSupport plugin building under Windows. commit 056d729af77e9dfe6b843349cdb0ab3b27827af3 Author: David Brooks '' Date: Tue Apr 17 19:22:47 2018 +1200 Python: add PythonSupport plugin so we can set PYTHONHOME. commit 50cb55daed822b7bcde6143eb1fb04194896a91c Author: Alan Garny '' Date: Tue Apr 17 17:18:01 2018 +1200 Property Editor widget: fixed a small issue with a colour property. commit c1519db864b8b3e5dcb7f2b9a93287bf735c18ac Author: Alan Garny '' Date: Tue Apr 17 16:09:03 2018 +1200 Some minor cleaning up. commit f6db0ecc7d700d1d56c7ac61a586843aa42dad80 Author: Alan Garny '' Date: Tue Apr 17 14:09:22 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' Things now look fine on macOS, but on Windows and Linux, the call to 'forceAlignWithNeighbors()' '(?)' results in some GUI flashes. commit 8ee9bd78701fd4e0eaa5363600c0706d7374ea21 Author: Alan Garny '' Date: Tue Apr 17 09:45:06 2018 +1200 Graph Panel widget: fixed an issue with graph panels not always being properly aligned '(#1619).' commit e6eaeb5958029a9f0a0239774449d71bcfc9918c Author: Alan Garny '' Date: Tue Apr 17 08:51:59 2018 +1200 Some minor cleaning up. commit e82ca714e851cfa9cb20df48fe4fd8584b3aaccf Merge: 69638d24b 036156a55 Author: Alan Garny '' Date: Mon Apr 16 16:53:14 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit 036156a55b41f0e0db6f4bc78bb0c967907a45ef Merge: e30cfd777 31809420f Author: Alan Garny '' Date: Mon Apr 16 16:49:04 2018 +1200 Base Python with Sphinx. commit 31809420f77ad4c0db30da63684a07f65761f002 Author: Alan Garny '' Date: Mon Apr 16 16:11:29 2018 +1200 Rebuild a default version of OpenCOR. commit eed235e71eaa1b71a7d60af0c56ceed67bd31b5f Author: Alan Garny '' Date: Mon Apr 16 16:10:23 2018 +1200 Some minor cleaning up. commit 519e05f6dc7ba9bb28d260af5c251b5f624987c5 Author: Alan Garny '' Date: Mon Apr 16 15:59:45 2018 +1200 Revert '"Rebuild' a default version of 'OpenCOR."' This reverts commit 636b394c91753c78f42c39638eff88585464404c. commit 636b394c91753c78f42c39638eff88585464404c Author: Alan Garny '' Date: Mon Apr 16 15:58:46 2018 +1200 Rebuild a default version of OpenCOR. commit 1060546f6a9387ae97ab62c5bbe2aa830bd04fb3 Author: Alan Garny '' Date: Mon Apr 16 15:55:13 2018 +1200 Some minor cleaning up. commit 831bf1d1aa1c2b663792d261c7e0b2dec19152a1 Author: Alan Garny '' Date: Mon Apr 16 15:54:36 2018 +1200 Some minor cleaning up. commit 0fa531e17ec67a828c15339ee8a5776205d93f9f Author: Alan Garny '' Date: Mon Apr 16 15:32:29 2018 +1200 Some minor cleaning up. commit 417148aa43fc4d45d3df01f942df31159628d06a Author: Alan Garny '' Date: Mon Apr 16 15:24:08 2018 +1200 Some minor cleaning up. commit bfef24673c49de8f797d03c1177c3424f666a88b Author: Alan Garny '' Date: Mon Apr 16 15:23:31 2018 +1200 Some minor cleaning up. commit 4aca9186421e45d0748a7dd99d9d7fae2157fa96 Author: Alan Garny '' Date: Mon Apr 16 14:59:59 2018 +1200 Temporarily build the OpenSSL, Python, PythonPackages and zlib plugins only. commit 08029572a48efb48059c1b7164ef93e2771e4f5b Author: Alan Garny '' Date: Mon Apr 16 14:58:33 2018 +1200 Some minor cleaning up. commit 59170277dfdedf3d86549945c1ec738ea9bd6f82 Author: David Brooks '' Date: Mon Apr 16 14:40:12 2018 +1200 CMake: use lowercase names for commands and our macros. commit 1c2bb443612f8af5eb0bcd1deebffb1a12f70bcf Author: David Brooks '' Date: Mon Apr 16 14:38:29 2018 +1200 Python: tidy code. commit 316dfc934bf1f58ad6f4ae154a69451b4edec17e Author: David Brooks '' Date: Mon Apr 16 14:38:02 2018 +1200 Python: ensure pip installs our customised packages. commit c0d27c790665a13a02edf7e0836f3d3fd9233b5c Author: David Brooks '' Date: Mon Apr 16 14:36:15 2018 +1200 Python: update pre-built packages for macOS. commit 322f8efe9a440e8e355efaf89fdba3940725aa97 Author: David Brooks '' Date: Mon Apr 16 14:32:38 2018 +1200 Python: new pre-built packages for Windows. commit f2ebe02d7ded80c4146a1548a6290f91b52add94 Author: David Brooks '' Date: Mon Apr 16 14:31:46 2018 +1200 Python: remove command line interface from Python plugin. commit 9f2a92d21b342cbde6e1c8d9ae1c08a26450c5d3 Author: Alan Garny '' Date: Mon Apr 16 13:09:28 2018 +1200 Some minor cleaning up. commit 00dd45ea712b9e557e40a88617b55cd6007a2d65 Author: Alan Garny '' Date: Mon Apr 16 11:10:26 2018 +1200 Temporarily build the Python and PythonPackages plugins. commit 9a4fbc189e2037f619efd22fc842a91aa9bd6f60 Author: Alan Garny '' Date: Mon Apr 16 10:07:14 2018 +1200 Some minor cleaning up. commit b5bfc37213bab52077224a3e10666856ab62151a Author: David Brooks '' Date: Mon Apr 16 09:29:48 2018 +1200 Python: tidy code. commit fea25d141ab72ba5277d7b276918ee7af2ca2de4 Author: Alan Garny '' Date: Mon Apr 16 09:06:16 2018 +1200 Some minor cleaning up. commit c4fff9d2277818e0d127154869beea028715ae5a Author: David Brooks '' Date: Sun Apr 15 20:30:13 2018 +1200 CMake: use lowercase names for commands and our macros. commit 5736369901c87a8ee88976a1133a01858a04e11a Author: David Brooks '' Date: Sun Apr 15 20:27:48 2018 +1200 Python: define and use PYTHON_ABI_VERSION. commit 5e4833b355ef55b8e5a068963c7a2c85ae4991cb Author: David Brooks '' Date: Sun Apr 15 20:27:07 2018 +1200 Python: updated versions of numpy, scipy, matplotlib, ipykernel, ipython and lxml packages. Note: Windows 64-bit binaries are now available on PyPi. commit bda8acaf6cf68ed748d784a52dce6685056ca69f Author: David Brooks '' Date: Sun Apr 15 20:00:22 2018 +1200 Python: tidy code and add CLI test results. commit caec1a8593372a34d41968d5e3f8467b94d1c0e6 Author: Alan Garny '' Date: Sun Apr 15 14:22:09 2018 +1200 Removed the '"Constant' with 'gradient"' icon, which we 'don'\''t' use yet. commit c1f92c7909fd626c928f323e3c7311e6c9864923 Author: Alan Garny '' Date: Sun Apr 15 14:09:55 2018 +1200 Some minor cleaning up. commit acc11e18bf74b20b00a0cc6d15f64f9eed67a720 Author: David Brooks '' Date: Sat Apr 14 20:59:46 2018 +1200 Python: allow debug builds under 'Windows;' tweak CMake file. commit 046d3ef8f90aba08ee77e94eeff4bc24e64ccfba Author: David Brooks '' Date: Sat Apr 14 20:49:49 2018 +1200 CMake: use lowercase names for commands and our macros. commit 819b973feba15b4ceb7f0129a3e906374a439da1 Author: David Brooks '' Date: Sat Apr 14 20:45:03 2018 +1200 Python: update '`pip`' and related tools. commit b797dfa318fac62cd484095ef76801c23d78bfd7 Merge: c5f2409bd e30cfd777 Author: David Brooks '' Date: Sat Apr 14 20:40:06 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 84711d50c72bcb0f7ab018a6cd657780089504b8 Merge: 2f3100251 41e74108c Author: Alan Garny '' Date: Sat Apr 14 12:09:29 2018 +1200 Non-deployed Python with Sphinx. commit 41e74108ca1c4c13b6db3c4cd6f24c198d97173c Author: David Brooks '' Date: Sat Apr 14 10:32:32 2018 +1200 Python: remove unused script. commit ddf2b9aae4fb04f77b5c3b2f7664fe8d0298386f Author: David Brooks '' Date: Sat Apr 14 10:24:18 2018 +1200 Python: minor tweaks. commit ff3ff952887baf71223c258151218823de8a6710 Author: David Brooks '' Date: Sat Apr 14 10:21:40 2018 +1200 Python: update tests since Python is no longer a deployed plugin. commit 06196ca4fd7617618a28ea215166fa0349b47108 Author: David Brooks '' Date: Sat Apr 14 10:17:01 2018 +1200 Python: Windows debug mode packages. commit 8fc943d48dd0f16f9493e90811fa702f8a136812 Author: David Brooks '' Date: Sat Apr 14 10:15:26 2018 +1200 Python: tweak CMake targets and dependencies. commit 2f3100251eb5f8e2ee22accb4435dc6c5c0ba0bb Merge: b73d756e1 e30cfd777 Author: Alan Garny '' Date: Sat Apr 14 01:37:48 2018 +1200 Merge branch ''\''master'\''' into issue1607. commit 69638d24bffc152e07707a13b219fe48d27392fd Merge: 3fca95bb3 e30cfd777 Author: Alan Garny '' Date: Sat Apr 14 01:37:19 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit e30cfd777d5b29793e36aa7fa80b7fc6ff105b1a Merge: ba30578da 800c3ef82 Author: Alan Garny '' Date: Sat Apr 14 01:36:27 2018 +1200 Qt: upgraded to Qt 5.9.5 LTS '(closes' '#1615).' commit 800c3ef8274541d2102ea92d2b021bbf292cead8 Author: Alan Garny '' Date: Sat Apr 14 00:55:28 2018 +1200 Slight update to our downloads page '(#1615).' commit fd5c9d2c1bbb6ea00cd03afa8f57193618a8fb8b Author: David Brooks '' Date: Fri Apr 13 21:15:25 2018 +1200 Python: new PythonPackages for macOS and Linux. commit ca764e4bd1c983a6a80fb121f7c70d42f99fbffb Author: David Brooks '' Date: Fri Apr 13 21:14:50 2018 +1200 Python: also use Release build for Debug under Windows. commit 118b7b2cdcb4078262d53a0e0eb16a987da8e481 Author: David Brooks '' Date: Fri Apr 13 21:13:18 2018 +1200 Python: use a global target, OpenCORBuild, to ensure Python plugin packages are actually built. commit b73d756e1078b282d550db0e64b6b579e60dff95 Merge: f12e2aad6 ba30578da Author: Alan Garny '' Date: Fri Apr 13 18:56:38 2018 +1200 Merge branch ''\''master'\''' into issue1607. commit 3fca95bb3786a87c2f31a06102efeef9f9fb4b59 Merge: d30bb125f ba30578da Author: Alan Garny '' Date: Fri Apr 13 18:56:09 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit ba30578da13417d5c287a2e5cf5f8c83420715f7 Merge: fa6d38517 58494b8f0 Author: Alan Garny '' Date: Fri Apr 13 18:55:14 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all '(closes' '#1613).' commit 48d47055b3dcd1c3c8a9b09ccbfbe31c58b38fdf Author: David Brooks '' Date: Fri Apr 13 18:32:05 2018 +1200 Python: 'don'\''t' include plugin libraries with OpenCOR. commit e200226496fbd26a7f1a1466e14217b354c28dd7 Author: David Brooks '' Date: Fri Apr 13 18:26:30 2018 +1200 Python: PythonPackages build depends on a built Python. commit 58494b8f08d0b490ddda14d80118d5506c715c85 Author: Alan Garny '' Date: Fri Apr 13 18:13:48 2018 +1200 Simulation Experiment view: properly handle '(short)' successive runs '(issue' '#1613).' commit 955bac7b0b54de3b3b25f5eb9adc4b9ba74eff2d Author: Alan Garny '' Date: Fri Apr 13 18:04:29 2018 +1200 Some minor cleaning up. commit 8e86854d58ed21aab335ff2d56e34ceda0d94181 Author: Alan Garny '' Date: Fri Apr 13 17:59:58 2018 +1200 Some minor cleaning up. commit 6e918292551a78b17660e336a288e5011a853980 Author: Alan Garny '' Date: Fri Apr 13 17:57:37 2018 +1200 Some minor cleaning up. commit edeac223d633ca01eeb7ff7e9eab5b49023765a4 Author: Alan Garny '' Date: Fri Apr 13 17:56:11 2018 +1200 Some minor cleaning up. commit 3b6e6d803d37b5604d8e46278a982e1909c53220 Author: Alan Garny '' Date: Fri Apr 13 17:53:28 2018 +1200 Some minor cleaning up. commit 0c60ec42db4a7cc8b183248225f89e7b7ef9fc4a Author: Alan Garny '' Date: Fri Apr 13 15:30:59 2018 +1200 Simulation Experiment view: simplified the way we '(re)check' our simulation results. commit 55b9ccba479390eb78669051383d19d36510b135 Author: Alan Garny '' Date: Fri Apr 13 15:25:55 2018 +1200 Simulation Experiment view: simplified the way we '(re)check' our simulation results. commit 620b24f4532a1b8c14e618274c1151614bb6a721 Author: Alan Garny '' Date: Fri Apr 13 15:15:02 2018 +1200 Some minor cleaning up. commit ec57b2ea91f523f7cbdd00dd160e07e63a940951 Author: Alan Garny '' Date: Fri Apr 13 15:10:13 2018 +1200 Some minor cleaning up. commit c3ff5dacfd41a6cc1bf4645de318ff9dd767b677 Author: Alan Garny '' Date: Fri Apr 13 14:41:38 2018 +1200 XSL transformer: put a mutex around our use of our list of jobs. commit c904bb9691656ac1aeba640d0c7cf3585e0c8a9f Author: Alan Garny '' Date: Fri Apr 13 14:35:54 2018 +1200 Some minor cleaning up. commit 195824a608c88ded9aed31024c89d369dfb6a337 Author: Alan Garny '' Date: Fri Apr 13 14:33:27 2018 +1200 Editor widget: use the old 'connect()' syntax when it comes to handling QScintilla signals. Indeed, we cannot use the new 'connect()' syntax since the signal is located in our QScintilla plugin and that we 'don'\''t' know anything about it... commit 6303fc014ea73490fdf72f103b746a20bfe232f8 Author: David Brooks '' Date: Fri Apr 13 11:23:04 2018 +1200 Python: 'don'\''t' actually deploy any code. commit c5f2409bdcda957e962214d35c5ba3517757d8a7 Author: David Brooks '' Date: Thu Apr 12 22:31:30 2018 +1200 Python: refactor code to use better names for variables. commit 5b30612c5cbe994b753c07d4f4cd41b526c4ab74 Author: David Brooks '' Date: Thu Apr 12 22:30:22 2018 +1200 Python: use a '`DataStoreValue`' object to make simulation data information available to Python. commit 78fbbeb56a5e503fa0501c8de1df2741615b30ca Author: David Brooks '' Date: Thu Apr 12 22:20:16 2018 +1200 Datastore: rename '`value()`' to '`valueAt()`' as it gets a value at a position. commit f12e2aad60e29c11a36f61d25c70d86d48404f54 Author: Alan Garny '' Date: Thu Apr 12 19:09:02 2018 +1200 Some minor cleaning up for our 'pythonplugin.*' and 'pythonpackagesplugin.*' files '(#1607).' commit 238d5e0fc50da7e05339fd408b1002ea0a547533 Author: Alan Garny '' Date: Thu Apr 12 19:03:08 2018 +1200 Some minor cleaning up for our 'pythonplugin.*' and 'pythonpackagesplugin.*' files '(#1607).' commit a1bce54bdab6f75a6a6ed3eccd01e3d28cef34f7 Author: Alan Garny '' Date: Thu Apr 12 16:14:45 2018 +1200 Slight update to our make/common.cmake file. commit 9e9e800c049cf47db294f689a162b9404c2b2a98 Author: Alan Garny '' Date: Thu Apr 12 15:56:52 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file '(#1607).' commit 36f001acdc921856c926e8046da5c8dc75f6f69b Author: Alan Garny '' Date: Thu Apr 12 14:49:53 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file '(#1607).' commit 637434ce2905378c8558087a084a54b10147fb86 Author: David Brooks '' Date: Thu Apr 12 14:38:49 2018 +1200 Python: rename PythonSupport plugin to PythonQtSupport. commit eb42c4f4adcf78506991603758277eb1bddb425e Author: Alan Garny '' Date: Thu Apr 12 14:38:30 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file '(#1607).' commit bb06773efa32a0e48fdcf22f9fd48cc2c74487e0 Merge: d4ea5576d fa6d38517 Author: David Brooks '' Date: Thu Apr 12 14:19:56 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 9b5268d653069cb8740d03b727af04f8e175df7e Author: Alan Garny '' Date: Thu Apr 12 13:57:49 2018 +1200 Some minor cleaning up. commit f9b0df3730ef35564326d2300cde4dfb15973c6b Author: Alan Garny '' Date: Thu Apr 12 12:43:33 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file '(#1607).' commit d8aa42d0a2af9afedaf815c177174886ad84dc2c Author: Alan Garny '' Date: Thu Apr 12 12:38:47 2018 +1200 Some minor cleaning up for our main CMakeLists.txt file '(#1607).' commit 7536703d370986c2a3dd04e77dac9dd4d706de29 Author: David Brooks '' Date: Thu Apr 12 10:41:54 2018 +1200 Python: more tidying up. commit fb028bdd72af8b7f668afa5bd142602215c4e9a0 Author: David Brooks '' Date: Thu Apr 12 10:35:38 2018 +1200 Python: remove more unneeded files. commit dc77009c7f8a6fe74c3d8f5423369fef101d29e5 Author: David Brooks '' Date: Thu Apr 12 10:29:06 2018 +1200 Python: remove/revert files not part of bundling runtime. commit 90dce758d0264b30753d4d1b6a111286e0e13f16 Merge: fa12f96e1 fa6d38517 Author: David Brooks '' Date: Thu Apr 12 10:21:34 2018 +1200 Merge branch ''\''master'\''' into pythonlibrary commit d30bb125fad4bee505857339ef6d434eb439afed Merge: e0b5518c2 fa6d38517 Author: Alan Garny '' Date: Thu Apr 12 10:03:19 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit fa6d385179815b68c26f8695bc6aefec1da6b2b6 Merge: 55718f183 87daea555 Author: Alan Garny '' Date: Thu Apr 12 10:02:35 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all '(closes' '#1613).' commit 87daea555ee56de6a4d5e3a4987a91d1682d65da Author: Alan Garny '' Date: Thu Apr 12 09:28:35 2018 +1200 Slight update to our downloads page '(#1613).' commit fa12f96e14defe217a251b3d51edce1350c2ee2a Author: David Brooks '' Date: Thu Apr 12 00:48:51 2018 +1200 Minor tidy. commit 9e17529ab6b74311a2cf47643ac3934619a96761 Author: David Brooks '' Date: Wed Apr 11 22:26:37 2018 +1200 Tests: plugin status report includes '`OpenSSL`' and '`zlib`' so add them to the expected status test output. commit f7266d42c477ebb223612d571b4d7d8a1419a993 Author: David Brooks '' Date: Wed Apr 11 22:21:05 2018 +1200 Python: update CLI tests for plugin. commit fa4352dd5354311488e970fc6c0132fd3248ad7a Author: Alan Garny '' Date: Wed Apr 11 19:46:14 2018 +1200 Simulation Experiment view: fixed an issue with some results being potentially not plotted at all '(#1613).' commit 55718f183f498cf21793897f5772d52144c2350f Merge: d8800df69 c65963610 Author: Alan Garny '' Date: Wed Apr 11 19:22:57 2018 +1200 Fixed some seemingly random crashes '(especially' on 'Windows)' '(closes' '#1574).' commit c65963610950454e500e162f8df3be123bfbaa34 Author: Alan Garny '' Date: Wed Apr 11 18:45:17 2018 +1200 Some minor cleaning up. commit 5f06a2861ea45a12663376ddc324d5f629cda818 Author: Alan Garny '' Date: Wed Apr 11 17:40:22 2018 +1200 Some minor cleaning up. commit 884092056c50fa22885e9f0fdfea28f780a4b9c2 Author: Alan Garny '' Date: Wed Apr 11 16:38:45 2018 +1200 Simulation Experiment view: only check for simulation results '(upon' clearing 'them)' when actually needed, i.e. not when reloading the view '(#1574).' It looks like it might have been the cause of our seemingly random 'crashes…!' commit 69a244d7ebcae26064589038cf4c36f00b7b145e Author: David Brooks '' Date: Wed Apr 11 14:13:39 2018 +1200 Python: make sure our scripts 'don'\''t' access any local site-packages directory. commit f19f6c9b90ed2a2a27449a5bf674a6506bbdd3b2 Author: David Brooks '' Date: Wed Apr 11 12:34:23 2018 +1200 Python: new release for Linux. commit 7fd211501608ae3b3271ea496e8669bffc66a86c Author: David Brooks '' Date: Wed Apr 11 12:30:54 2018 +1200 Python: new release for Windows. commit af7b599038cf39b977c1007c032151491629f526 Author: David Brooks '' Date: Wed Apr 11 12:30:21 2018 +1200 Python: build Sphinx package for Windows. commit 19daada79263eb6d49b0e88aea5e8b68b5aa59dd Author: David Brooks '' Date: Wed Apr 11 12:28:23 2018 +1200 Python: define location of scripts. commit ae2acb3e783a6e7c519c45bf4f32caa1d2ba4203 Author: David Brooks '' Date: Wed Apr 11 12:26:37 2018 +1200 Python: ignore files we 'can'\''t' access when updating scripts. commit c11cf1bc51ee0d95ee3e0ff71ba44e5f92d06a0e Author: Alan Garny '' Date: Wed Apr 11 11:23:30 2018 +1200 Some minor cleaning up. commit df154c2c3d11a15b725d637142af1b0377f1b5a9 Author: Alan Garny '' Date: Wed Apr 11 11:16:43 2018 +1200 Some minor cleaning up. commit 654f6c1b47c2981383039c416863dc44667112c6 Author: Alan Garny '' Date: Wed Apr 11 11:13:22 2018 +1200 Some minor cleaning up. commit c808850dcd2184c0370e0b2c560c1ef782334ef0 Author: Alan Garny '' Date: Wed Apr 11 11:08:32 2018 +1200 Some minor cleaning up. commit 4da2a6583f0985f804738a8c0220a278da94a3d5 Author: Alan Garny '' Date: Wed Apr 11 10:53:38 2018 +1200 Some minor cleaning up. commit e0b5518c226fe73b03025c61c3f57dc7601ae2c8 Merge: e0155a9a5 d8800df69 Author: Alan Garny '' Date: Wed Apr 11 10:13:14 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit ba8374b3a2d35c31b3ae08ed78cf1583ea26e72d Merge: c5823b693 d8800df69 Author: Alan Garny '' Date: Wed Apr 11 10:11:16 2018 +1200 Merge branch ''\''master'\''' into issue1574. commit d8800df691c253ee570f359519ea2f90eb35393f Merge: 11e104788 6d8c6c2ad Author: Alan Garny '' Date: Wed Apr 11 10:07:01 2018 +1200 QScintilla: upgraded to version 2.10.4 '(closes' '#1608).' commit 6d8c6c2adc07485e3c7e29134516207db523dc8d Author: Alan Garny '' Date: Wed Apr 11 09:37:41 2018 +1200 Slight update to our downloads page '(#1608).' commit 5b1d41a3e06bd7b62b9ad74f22237968bcf0fe35 Author: Alan Garny '' Date: Wed Apr 11 09:36:00 2018 +1200 Stop building only QScintilla '(#1608).' commit 35ead2a9f3db5c7d88934f2d7749dcefc6bb87b7 Author: Alan Garny '' Date: Wed Apr 11 09:35:05 2018 +1200 QScintilla: generated Windows, Linux and macOS binaries for version 2.10.4 '(#1608).' commit 4b815820655d369482b6943ec5e780a9895a6be7 Author: Alan Garny '' Date: Wed Apr 11 09:22:38 2018 +1200 Only build QScintilla '(#1608).' commit b6cff4948ae403545aa3c5b9ad1d4cfa3848303b Author: Alan Garny '' Date: Wed Apr 11 09:18:27 2018 +1200 Only build QScintilla '(#1608).' commit f86791ce9c5fe8cb309d11df8766d4a7e2c42a59 Author: Alan Garny '' Date: Wed Apr 11 09:16:02 2018 +1200 Getting read to build QScintilla 2.10.4 '(#1608).' commit cb181e0276640c09b18333a672762553cfb29d85 Author: Alan Garny '' Date: Wed Apr 11 09:02:56 2018 +1200 Only build QScintilla '(#1608).' commit 12734b58ced194425f903b4a2593845473686312 Author: David Brooks '' Date: Tue Apr 10 20:25:29 2018 +1200 Converted CMake language commands and our macros to lower case. commit 86d5c0b8b3f5545cf688c5643e523b1ca34ff90d Author: David Brooks '' Date: Tue Apr 10 20:00:36 2018 +1200 Python: export '${SPHINX_BUILD_EXECUTABLE}' to CMake. commit 8d20acfeece94a86b65ea50b9d49fb766e5a8423 Author: David Brooks '' Date: Tue Apr 10 19:54:44 2018 +1200 Python: script tidy up. commit 265cc8c75fafea83e00542f3b8a13e04dd9586a4 Author: David Brooks '' Date: Tue Apr 10 19:54:20 2018 +1200 Python: export '${PYTHON_RELATIVE_RUNTIME_DIR}' to CMake. commit f178665abc706aa9af8911bb63b0334e6d4c7cb3 Author: David Brooks '' Date: Tue Apr 10 19:53:15 2018 +1200 Python: update '`pip`,' '`setuptools`' and '`wheel`' to latest versions. commit 6ba77515916164fb8e494a10d123d5272d1d1469 Author: David Brooks '' Date: Tue Apr 10 19:52:17 2018 +1200 Python: 'don'\''t' apply patches for Windows when not building a Windows Python... commit 58e262988071912c2e660fb9af9b68e74ce84072 Author: David Brooks '' Date: Tue Apr 10 19:51:20 2018 +1200 Python: ignore sub-directories when updating Python runtime path in scripts. commit 548ac2dbfe2f44d6eb883ac2de71e6f5fdc314b7 Author: David Brooks '' Date: Tue Apr 10 19:49:34 2018 +1200 Python: only build Python and PythonPackages plugin, with '`sphinx`' as the only package. commit c5823b693fcedf1ceb9d01e3bd212c55a5fb642d Author: Alan Garny '' Date: Tue Apr 10 18:06:55 2018 +1200 Simulation Experiment view: improved the finalisation of our graph panel / graphs widget '(#1574).' commit 12a27013720f09318bdf4bfcd330697b6baf74bf Author: Alan Garny '' Date: Tue Apr 10 17:49:43 2018 +1200 Simulation Experiment view: improved the finalisation of our graph panel / graphs widget '(#1574).' commit 9ba0ac9ae4c9b8826a9fced64da69bd4fff558f3 Author: Alan Garny '' Date: Tue Apr 10 15:56:03 2018 +1200 Simulation support: make the deletion of our simulation results safer '(#1574).' commit 80b6ae5ad0532d9eaab799a572560f25c9dbc4af Author: Alan Garny '' Date: Tue Apr 10 15:54:36 2018 +1200 Some minor cleaning up. commit 474d841adc5aa0ff884f18cf1dde6e9f81f73756 Author: Alan Garny '' Date: Tue Apr 10 11:27:56 2018 +1200 General: have our different arrays initialised upon creation '(#1574).' Who knows, this might actually address our issue '#1574…' commit dc708e647f25c776218ebe595a66b203835b8297 Author: Alan Garny '' Date: Tue Apr 10 11:04:03 2018 +1200 Reverting commit 62547f2 '(#1574).' commit 62547f28af30f8d08554ac966e0b24f787df6152 Author: Alan Garny '' Date: Tue Apr 10 08:35:57 2018 +1200 Simulation support: make sure that our various arrays are properly reset when destroyed '(#1574).' commit d4ea5576d1ccb27151a0bfcbf32c50b9b71489bc Author: David Brooks '' Date: Mon Apr 9 22:22:50 2018 +1200 Data store: make sure arrays are initialised when allocated. commit 11e1047884c198103fd64c77bde132d124ebe42c Merge: aff9ff360 2a67e9ef5 Author: Alan Garny '' Date: Mon Apr 9 19:50:15 2018 +1200 Revert part of issue '#1574.' commit 2a67e9ef5042341c1e77399fb8bb78f124317323 Author: Alan Garny '' Date: Mon Apr 9 18:25:20 2018 +1200 Removed our '(temporary)' test files. commit 0bcbfe480c19c7ef304d0d6c0616ed5df4a10195 Author: Alan Garny '' Date: Mon Apr 9 18:20:31 2018 +1200 Reverted commit 2f38478 '(#1574).' Indeed, our $'\342\200\234solution\342\200\235' could have some side effect and $'it\342\200\231s' not guaranteed that it was the $'\342\200\234solution\342\200\235' to the random crashes observed in issue '#1574.' Regarding the side effect, imagine the case were the Simulation Experiment view for file A refers to file B. Then, if we were to modify and reload B while in some editing view, the Simulation Experiment view of B $'wouldn\342\200\231t' get reloaded, which means that to switch to A would result in its Simulation Experiment view being out of sync with B. commit 05fa27ca2f0a12952e9d69874c50d8971b704192 Merge: da6674447 aff9ff360 Author: Alan Garny '' Date: Mon Apr 9 18:01:43 2018 +1200 Merge branch ''\''master'\''' into test. commit e0155a9a53f43685265f2b9de2aebd98b6776af9 Merge: 064b09df6 aff9ff360 Author: Alan Garny '' Date: Mon Apr 9 18:01:06 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit aff9ff3608685930a11a06c571d37aeb35db1385 Merge: 463b14e45 5e076df83 Author: Alan Garny '' Date: Mon Apr 9 17:34:13 2018 +1200 Various cleaning up. commit 5e076df837b609087a633d03151b96a9aabba49c Author: Alan Garny '' Date: Mon Apr 9 17:02:45 2018 +1200 Some minor cleaning up. commit a0d558ea59db41beaa386cb96736175ef53f4cd3 Author: Alan Garny '' Date: Mon Apr 9 16:37:29 2018 +1200 Minor code cleaning up '(#1603).' commit 3cee6afd2f36c008ab8a4a3c594f5c6e124c9f78 Merge: 19f11dc22 463b14e45 Author: Alan Garny '' Date: Mon Apr 9 16:27:03 2018 +1200 Merge remote-tracking branch ''\''opencor/master'\''.' commit 19f11dc22eff2a7c144dee597df3f523c81a59a3 Author: Alan Garny '' Date: Mon Apr 9 16:21:34 2018 +1200 Some minor cleaning up with regards to our use of 'QString::arg().' commit 463b14e452fecb04d8c3ff4864ce15eb53f2181c Author: Alan Garny '' Date: Mon Apr 9 15:21:02 2018 +1200 Minor code cleaning up '(#1603).' commit 87932f3c1f154aae8b9ada03e704136b84b5e67e Author: David Brooks '' Date: Mon Apr 9 15:00:49 2018 +1200 Python: fix bad merge. commit c4f538611b06302831afc468397a172b375f4d15 Merge: 4cb2c66c6 e5481d5f3 Author: Alan Garny '' Date: Mon Apr 9 14:55:28 2018 +1200 Merge remote-tracking branch ''\''opencor/master'\''.' commit 4cb2c66c66d6f77e2fcaa8decaac996e9dc75bf5 Author: Alan Garny '' Date: Mon Apr 9 14:55:00 2018 +1200 Some minor cleaning up with regards to our use of 'QString::number().' commit 5fb4cc479d19eee1a03c815cb75f817760d39a92 Merge: 6f95da59d e5481d5f3 Author: David Brooks '' Date: Mon Apr 9 14:54:52 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit e5481d5f31748f92d4a44f763156c4ab3be66e84 Author: Alan Garny '' Date: Mon Apr 9 14:47:12 2018 +1200 Minor code cleaning up '(#1603).' commit 3eb2b34842c75757e7741095aecf1bfaf183d50a Merge: 663a89524 8d0a155d2 Author: Alan Garny '' Date: Mon Apr 9 14:44:57 2018 +1200 Minor code cleaning up. commit 973d84bc581dc626bbaefa7ba428deca3f1907d1 Author: Alan Garny '' Date: Mon Apr 9 14:15:07 2018 +1200 Some minor cleaning up with regards to our use of 'QWidget::setStyleSheet().' commit 8d0a155d2e305883104973c9e16143a1a74f2650 Author: David Brooks '' Date: Mon Apr 9 14:11:36 2018 +1200 Minor code cleaning up. commit aaa7c6ad3d3fabac37df98bed02a7ea4e69b67ed Author: David Brooks '' Date: Mon Apr 9 14:03:23 2018 +1200 Minor code cleaning up. commit 064b09df632236eece92a4fcae66655586cd78f7 Author: Alan Garny '' Date: Mon Apr 9 13:08:30 2018 +1200 Slight improvements to our main CMakeLists.txt file '(#1544).' commit 53f8f5caa3572d439a1d64cdc44852ae56bcd520 Author: Alan Garny '' Date: Mon Apr 9 12:52:37 2018 +1200 Correctly retrieve the Sphinx version on Linux '(#1544).' commit a95fdb036030c73725b2239ad1d90d08ddd3b323 Author: Alan Garny '' Date: Mon Apr 9 11:49:11 2018 +1200 Check whether we can build the Sphinx-based documentation '(#1544).' commit 6f95da59d9eca16d05726ca62d6c0710aba65d05 Author: David Brooks '' Date: Mon Apr 9 09:18:31 2018 +1200 Python: tidy code. commit 697f6030c8fb3a44948965c39c1dbbf359a7e20c Merge: 52aa9e2b0 663a89524 Author: David Brooks '' Date: Sun Apr 8 22:01:11 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 52aa9e2b0c0bccc8c8b99c9602686b8a0af2a86b Author: David Brooks '' Date: Sun Apr 8 21:57:35 2018 +1200 Python: delete gradients array before creating a new gradients data store '**not**' when deleting the 'simulation'\''s' data arrays. commit 9de1454bfc7c6c9985f8dcb1eb348a087ce67f86 Author: David Brooks '' Date: Sun Apr 8 21:52:34 2018 +1200 Python: resetting parameters and clearing results are two different things... commit 40e028a9ca0d47e20ff8fda57e9ace2830c89200 Author: David Brooks '' Date: Sun Apr 8 09:37:25 2018 +1200 Python: delete DataStoreArrays when their ref count reaches zero. commit 0c29fa0884935c57b5ba458433f9472ec18bb4b4 Author: David Brooks '' Date: Sat Apr 7 09:21:02 2018 +1200 Python: let our simulation widget know a run is starting. commit 37fac5c5cdbb2bb8f148908a022538684e15f027 Author: David Brooks '' Date: Sat Apr 7 09:20:06 2018 +1200 Use new style signal/slot 'connect()' and tidy code. commit da667444754a2f8f850d3f37d425376ef4eb3a04 Author: Alan Garny '' Date: Fri Apr 6 16:48:20 2018 +1200 Added some test SED-ML/CellML files. Open models/tests/bg_files/ca_dynamics_bg_1.sedml. commit 015423243a39490e37e047f8ffdbef44f66b7060 Merge: 5f5a757a4 6d150f29a Author: David Brooks '' Date: Fri Apr 6 16:40:31 2018 +1200 Merge branch ''\''master'\''' into pythonplugin commit 2033ff17aed33561992112f4deec8e77b80f2bba Merge: d8e2330ce 663a89524 Author: Alan Garny '' Date: Fri Apr 6 15:07:28 2018 +1200 Merge remote-tracking branch ''\''opencor/master'\''' into issue1544. commit 663a895248c7d1795fbd799f885d658b82c6a574 Author: Alan Garny '' Date: Fri Apr 6 15:03:20 2018 +1200 Slight update to our main CMakeLists.txt file. commit 5f5a757a437d3bb418c5b36611f9a51de59e023f Merge: e0e794fea 183335b11 Author: David Brooks '' Date: Fri Apr 6 14:51:25 2018 +1200 Merge commit ''\''183335b11'\''' into pythonplugin commit 6d150f29a0e3949d2fe54f033201cdcbe163cff9 Merge: 0f6eeffb8 063e4b32e Author: Alan Garny '' Date: Fri Apr 6 14:21:23 2018 +1200 CellML support: slight improvement to our error reporting. commit 063e4b32ebd9014e8fce1f9137bb428ec3462c62 Author: Alan Garny '' Date: Fri Apr 6 13:50:16 2018 +1200 CellML support: slight improvement to our error reporting. commit 0f6eeffb80d5f4892d9fc2b3997ae5ef10d7293b Author: Alan Garny '' Date: Fri Apr 6 13:44:57 2018 +1200 Some minor cleaning up. commit e0e794fea78ed264d33074b99a90c1c0b7be9559 Author: David Brooks '' Date: Fri Apr 6 11:57:05 2018 +1200 Python: fixes and tidy ups after merging. commit d8e2330ceaacab7eb4ce30b37055ad58900f1a85 Merge: e7d93f936 b83f340a8 Author: Alan Garny '' Date: Fri Apr 6 11:50:30 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit b83f340a863280fbba0c31bf08d0a4b43b1ee698 Merge: 6416fd74a 296b207ab Author: Alan Garny '' Date: Fri Apr 6 11:47:59 2018 +1200 Some minor cleaning up. commit 296b207ab00597b0e7e2e553efe61e330840ef5e Author: Alan Garny '' Date: Fri Apr 6 11:12:41 2018 +1200 Some minor cleaning up '(#1592).' commit 130836e096e31750ddea07d41809d1606a19542e Author: David Brooks '' Date: Thu Apr 5 21:28:14 2018 +1200 Merge commit ''\''2b65c99'\''' into pythonplugin commit 6416fd74a3e37b93b2f5e23ae8d546ddb714bce7 Author: Alan Garny '' Date: Thu Apr 5 11:13:46 2018 +1200 Some minor cleaning up. commit df6530d3b6bc90dab4a997fcd65d5d1075a10c86 Merge: ad0e5ebba ab69a032c Author: Alan Garny '' Date: Thu Apr 5 11:11:20 2018 +1200 Fixed some seemingly random crashes may occur '(especially' on 'Windows)' '(closes' '#1574).' commit ab69a032cb432c7b7cf0e38986ce980803a59c28 Author: Alan Garny '' Date: Thu Apr 5 10:36:15 2018 +1200 Slight update to our downloads page '(#1574).' commit e48b022b2f131d6cc25fd56d0e806fdd557d6cb4 Author: Alan Garny '' Date: Thu Apr 5 10:00:05 2018 +1200 Some minor cleaning up. commit e7d93f936fd8c9955cda4a14160c4f92ea8b7b8d Merge: c221f6293 ad0e5ebba Author: Alan Garny '' Date: Thu Apr 5 09:18:32 2018 +1200 Merge branch ''\''master'\''' into issue1544. commit c345180ce7b3835e57f5ba7064b7bb482864194c Merge: 5736e1512 ad0e5ebba Author: Alan Garny '' Date: Wed Apr 4 20:15:49 2018 +1200 Merge branch ''\''master'\''' into issue1574. commit ad0e5ebbaf164dca5ceff799d3279743b8463e74 Merge: a7c75d137 dea4690d9 Author: Alan Garny '' Date: Wed Apr 4 20:05:37 2018 +1200 General: improved the overall quality of our code '(closes' '#1592).' commit dea4690d97f85b473459b13a5e687c5ccf24ea7b Author: Alan Garny '' Date: Wed Apr 4 19:33:15 2018 +1200 Some minor cleaning up '(#1592).' This ensures that we can build QSctintilla and still have our Editing widget to build fine on Linux commit e010c7167464b1daa105723ca87caed6356aa811 Merge: c77cf0197 7ac99e445 Author: David Brooks '' Date: Wed Apr 4 18:14:37 2018 +1200 Merge commit ''\''7ac99e4'\''' into pythonplugin commit d293a03edba35bcda111d99d04093bf5c111d49e Author: Alan Garny '' Date: Wed Apr 4 18:00:11 2018 +1200 Redisable our sample plugins, test plugins and tests. commit c77cf01971e47dbca6a7a1dd2fdc9edc56a2c0a7 Merge: d68c87c2a 352da1458 Author: David Brooks '' Date: Wed Apr 4 17:55:33 2018 +1200 Merge commit ''\''352da14'\''' into pythonplugin commit ba7935dbac0ef2136e03febfbc70ab49b09d61b2 Author: Alan Garny '' Date: Wed Apr 4 17:54:50 2018 +1200 Some minor cleaning up '(#1592).' commit 995e63acf56b52e4e33b6472cf7a30eeedd03a33 Author: Alan Garny '' Date: Wed Apr 4 17:44:00 2018 +1200 Some work on replacing automatic signals 'on_XXX_YYY()' with a proper connection '(#1592).' commit 4a045430049a0a8dcb947ab77d2e06aace2874e3 Author: Alan Garny '' Date: Wed Apr 4 17:37:54 2018 +1200 Some work on replacing automatic signals 'on_XXX_YYY()' with a proper connection '(#1592).' commit d68c87c2aaed21462412f978eb48eba1915dac54 Author: David Brooks '' Date: Wed Apr 4 16:41:31 2018 +1200 Merge commit ''\''76cd773'\''' into pythonplugin commit 7c30c015349e0bd3333828a2760b4b27738b3754 Author: Alan Garny '' Date: Wed Apr 4 17:22:53 2018 +1200 Some work on replacing automatic signals 'on_XXX_YYY()' with a proper connection '(#1592).' commit 8ee75e1fb0f2b7ec8aa06468ed7785d8fef06a46 Merge: 2c2b36dd3 1ce99e6f7 Author: David Brooks '' Date: Wed Apr 4 16:09:15 2018 +1200 Merge commit ''\''1ce99e6'\''' into pythonplugin commit 2c2b36dd30b0a11281489485dea23879fbf87956 Merge: f1b666e6d 503920fdd Author: David Brooks '' Date: Wed Apr 4 15:56:00 2018 +1200 Merge commit ''\''503920f'\''' into pythonplugin commit f1b666e6dbcdecce07e02335f36f87f5db81c422 Merge: 0ac1b1f37 6b14cae46 Author: David Brooks '' Date: Wed Apr 4 15:55:38 2018 +1200 Merge commit ''\''6b14cae'\''' into pythonplugin commit 0ac1b1f371282a9122f983921519f725bc2468ef Merge: d52b21300 e2b282e7d Author: David Brooks '' Date: Wed Apr 4 15:55:19 2018 +1200 Merge commit ''\''e2b282e'\''' into pythonplugin commit d52b2130022a4b7d9fc2698d8995ffc4370661c3 Merge: 2711f1aff 958243515 Author: David Brooks '' Date: Wed Apr 4 15:54:50 2018 +1200 Merge commit ''\''9582435'\''' into pythonplugin commit 3b94f4262c23cbf35d96c65509d35cbf23cb0eb9 Author: Alan Garny '' Date: Wed Apr 4 15:53:24 2018 +1200 Some work on replacing automatic signals 'on_XXX_YYY()' with a proper connection '(#1592).' commit 2711f1affa86e2b1c29ed23e7981d658934e4210 Merge: b1b650e51 f038353b9 Author: David Brooks '' Date: Wed Apr 4 15:52:51 2018 +1200 Merge commit ''\''f038353'\''' into pythonplugin commit 1f17877ec130933cbd31572d84275eca2a106e7e Author: Alan Garny '' Date: Wed Apr 4 15:37:15 2018 +1200 Some minor cleaning up '(#1592).' commit b1b650e510d4773b080563fde8c9d3aede0895f9 Author: David Brooks '' Date: Wed Apr 4 15:11:08 2018 +1200 Python: use better names for '`double' '*`' arrays. commit f0e4e2c247afa61dddab1adbae18646c909d4a71 Author: Alan Garny '' Date: Wed Apr 4 14:49:28 2018 +1200 Some minor cleaning up '(#1592).' commit 626d02aeeecbab125e81c05b838e67a52f4039e7 Author: Alan Garny '' Date: Tue Apr 3 00:25:08 2018 +1200 Some minor cleaning up '(#1592).' Removed our use of full namespaces since we $'don\342\200\231t' need them with the new signal/slot mechanism. commit 4e4f691fd5430392806c9ea3ecf899f6e96b7efe Merge: bbe7fff41 4a418f39b Author: David Brooks '' Date: Wed Apr 4 14:33:14 2018 +1200 Merge commit ''\''4a418f3'\''' into pythonplugin commit bbe7fff411ae2fbcf51bbb9fa0c70d60749d6d88 Merge: ad4ae6d48 6f3219366 Author: David Brooks '' Date: Wed Apr 4 14:31:45 2018 +1200 Merge commit ''\''6f32193'\''' into pythonplugin commit df284b19353827a774db2ea0e26361d7b542372e Author: Alan Garny '' Date: Mon Apr 2 20:36:53 2018 +1200 Some minor cleaning up '(#1592).' commit 165087bac72d5ccdd13b064a5c0b9f4c5902f506 Author: Alan Garny '' Date: Mon Apr 2 19:49:42 2018 +1200 Some minor cleaning up. commit 63167c55e4dc6c4991a14e6012580b6a36fa8135 Author: Alan Garny '' Date: Mon Apr 2 19:31:11 2018 +1200 Removed a file that we forgot to delete at some point. commit c908059de5b245e03252b1c1b80f99e9722d41f7 Author: Alan Garny '' Date: Mon Apr 2 19:30:43 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 7bc60410829c7211c313f19c4c28795a9acc75d7 Author: Alan Garny '' Date: Wed Apr 4 14:01:56 2018 +1200 Some minor cleaning up '(#1592).' commit ff96cce204ee90dffe2c5e9d510036e248bba0b9 Author: Alan Garny '' Date: Mon Apr 2 19:22:16 2018 +1200 Some minor cleaning up '(#1592).' commit c41af1fd90836eeb90fa8c6dd0de292045592e07 Author: Alan Garny '' Date: Wed Apr 4 13:56:36 2018 +1200 Some minor cleaning up '(#1592).' commit ad4ae6d4852607c54a44179c0c6930505eb6044b Merge: c7cf6ccaa 0761532fb Author: David Brooks '' Date: Wed Apr 4 11:22:09 2018 +1200 Merge commit ''\''0761532'\''' into pythonplugin commit c7cf6ccaa1164afc3be80159f3adb953e6673794 Merge: 1eaaaddd7 5ca1a92f7 Author: David Brooks '' Date: Wed Apr 4 11:14:59 2018 +1200 Merge commit ''\''5ca1a92'\''' into pythonplugin commit 1eaaaddd77b73641f2b556bcf3548fe38f2830a8 Merge: d2e6a822b 641e1011a Author: David Brooks '' Date: Wed Apr 4 11:14:02 2018 +1200 Merge commit ''\''641e1011a2f3b901554566e693de85a0d347fd89'\''' into pythonplugin commit d2e6a822bec190bc0ac0a538722601b41a5390bf Merge: 910002cc6 2ef5bafc0 Author: David Brooks '' Date: Wed Apr 4 11:13:34 2018 +1200 Merge commit ''\''2ef5baf'\''' into pythonplugin commit 910002cc65b9c38862db86c3fb8993ca5d6c9c25 Merge: c09fe3b72 99c49e213 Author: David Brooks '' Date: Wed Apr 4 11:12:40 2018 +1200 Merge commit ''\''99c49e2'\''' into pythonplugin commit 2657147de22113fc27298e007c2a1d9c7af23ad1 Author: Alan Garny '' Date: Mon Apr 2 19:11:10 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 01ba2d37791037924c2569fab76f3fb92469905d Author: Alan Garny '' Date: Wed Apr 4 10:27:24 2018 +1200 Some minor cleaning up '(#1592).' commit c81386f7892ffe4a354351c0a85df9a5da3c1a2e Author: Alan Garny '' Date: Mon Apr 2 18:19:36 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit bdeaa02827044a4dbf6656f237ab8a2f19b04414 Author: Alan Garny '' Date: Wed Apr 4 09:31:49 2018 +1200 Some minor cleaning up '(#1592).' commit 6452f489f8974869ce5c0553f353c4721c16122e Author: Alan Garny '' Date: Mon Apr 2 17:36:18 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 16ccb42e469c7525e5755e967095a4a7922c6bdd Author: Alan Garny '' Date: Tue Apr 3 22:58:58 2018 +1200 Some minor cleaning up '(#1592).' commit 9b70ad67821bce50bf40d2c1a0499b5fe599f6cb Author: Alan Garny '' Date: Mon Apr 2 16:05:45 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 9f15cedac4b40192ee900acc7550d9773e516cb9 Author: Alan Garny '' Date: Tue Apr 3 18:55:20 2018 +1200 Some minor cleaning up '(#1592).' commit 36080098763d65cd2e007bb23db60378c93cde13 Author: Alan Garny '' Date: Mon Apr 2 09:35:56 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit be53e52c915f272dd1ec4a5f3937f272062c22e6 Author: Alan Garny '' Date: Mon Apr 2 08:57:04 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit badd5a5cce4c3161a34822d59580ae36d1372846 Author: Alan Garny '' Date: Tue Apr 3 18:05:28 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit bb1ff61098372885f752c318df710e9b6dff915e Author: Alan Garny '' Date: Tue Apr 3 16:35:08 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit b28369ee36f18fe24ffa9c915209d0596c840e0d Author: Alan Garny '' Date: Sun Apr 1 20:22:53 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit adbe687f6cabcd221079dc82b366c9096fe7de8e Author: Alan Garny '' Date: Tue Apr 3 14:52:07 2018 +1200 Temporarily enable sample plugins, test plugins and tests. commit 50626750d56abba54f52b00c8213edfb651a2a01 Author: Alan Garny '' Date: Tue Apr 3 14:50:27 2018 +1200 Some minor cleaning up '(#1592).' commit 843cf63879557d16e096cf2d8ca40cd29d83e152 Author: Alan Garny '' Date: Sun Apr 1 18:51:19 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 6a19d8ddee19b865af5c5cea9cd5ca987426c529 Author: Alan Garny '' Date: Sun Apr 1 18:42:30 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit a81dcb918ed0c869254af473da12d18ee9d0e8e9 Author: Alan Garny '' Date: Tue Apr 3 14:23:09 2018 +1200 Some minor cleaning up '(#1592).' commit f2224355158342956da91525e81787226b2e0c25 Author: Alan Garny '' Date: Sun Apr 1 18:01:08 2018 +1200 Some work on using the '"new"' signal/slot syntax '(#1592).' commit 82d940c5ff90771b6864545a16edd771e80d42db Author: Alan Garny '' Date: Sun Apr 1 16:33:45 2018 +1200 Replaced '`Qt::CTRL`' with '`Qt::ControlModifier`,' '`Qt::SHIFT`' with '`Qt::ShiftModifier`,' '`Qt::ALT`' with '`Qt::AltModifier`' and '`Qt::META`' with '`Qt::MetaModifier`' '(#1592).' commit 4ef87af5de46c6c5ddb865ae58c7155a848197e6 Author: Alan Garny '' Date: Sun Apr 1 16:24:00 2018 +1200 Replaced instances of '`const' quint64 '&`' with '`quint64`' '(#1592).' commit bbc1bf2709499d7f2f2f1099648cf22539462036 Author: Alan Garny '' Date: Sun Apr 1 16:21:48 2018 +1200 Replaced instances of '`const' qint64 '&`' with '`qint64`' '(#1592).' commit c7278e76b9ba90b907ba1bc089e60c34fdeda438 Author: Alan Garny '' Date: Sun Apr 1 16:18:22 2018 +1200 Replaced instances of '`const' double '&`' with '`double`' '(#1592).' commit f0107d50ce8bc2098bbd6600da5b148e92f821b5 Author: Alan Garny '' Date: Sun Apr 1 15:35:19 2018 +1200 Replaced instances of '`const' bool '&`' with '`bool`' '(#1592).' commit 47c7ac41d0f7b7f4cde177fe24c76cdf30fc5fd6 Author: Alan Garny '' Date: Sun Apr 1 14:58:08 2018 +1200 Replaced '`virtual`' with '`override`' in overridden methods '(#1592).' commit 08e0f1e1c4324dd29f626ab2fbef23944dbb1cc9 Author: Alan Garny '' Date: Sun Apr 1 10:56:37 2018 +1200 Some minor cleaning up. commit a86fb6e826e057123ef8d18ed72b278e18ba001f Author: Alan Garny '' Date: Sun Apr 1 10:48:30 2018 +1200 Some minor cleaning up. commit b34d712a3ff18206ad0a36dc4a6405fd61a5b086 Author: Alan Garny '' Date: Fri Mar 30 20:30:48 2018 +1300 Added a closing '`//' namespace 'UI`' here and there '(#1592).' commit c221f629324cd8071201bd3ec5e8525b6bc72ff8 Merge: fd56efa29 a7c75d137 Author: Alan Garny '' Date: Thu Mar 29 19:52:31 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 5736e15126cc2f9e4bf0bf6e25217a8bc55ad906 Author: Alan Garny '' Date: Thu Mar 29 19:51:51 2018 +1300 PMR Workspaces window: only refresh our workspaces and changes if we are visible '(#1574).' Indeed, we were refreshing our workspaces all the time, even if the PMR Workspaces window $'wasn\342\200\231t' visible. So, I wonder whether this might not have been the cause of some of our random 'crashes?…' commit a6e37f50b479db62ac2ed36001d2d320e2b80ca8 Author: Alan Garny '' Date: Thu Mar 29 19:32:58 2018 +1300 Some minor cleaning up. commit 0dbeb36976ea9b0d0d39d6b4bbc07f327823c1b0 Author: Alan Garny '' Date: Thu Mar 29 18:11:27 2018 +1300 Merge branch ''\''master'\''' into issue1574. commit a7c75d1370974f652a587f267a8208b777d19f1b Merge: 3b1feeb10 40c2cc680 Author: Alan Garny '' Date: Thu Mar 29 18:05:53 2018 +1300 CellML support: now provide more information when imports cannot be fully instantiated '(closes' '#1595).' commit 40c2cc6808aa3f3d81852433dbb1e16cb2afea05 Author: Alan Garny '' Date: Thu Mar 29 17:31:29 2018 +1300 Slight update to our downloads page '(#1595).' commit fc2b453d27db0d1bf5ac9b240fd3cecbac46a9e7 Author: Alan Garny '' Date: Thu Mar 29 17:31:02 2018 +1300 CellML support: provide more information when imports cannot be fully instantiated '(#1595).' commit a7f0e47584204514b5dd8b9dec39ff6759339886 Author: Alan Garny '' Date: Thu Mar 29 17:05:43 2018 +1300 CellML support: provide more information when imports cannot be fully instantiated '(#1595).' commit d8243fcafb3f2c7e9e53cd555243f557f08379b1 Author: Alan Garny '' Date: Thu Mar 29 16:49:21 2018 +1300 Some minor cleaning up. commit 3b1feeb1088f92f4730ef7922d7715789448a390 Merge: 1e2f43822 edda62f9f Author: Alan Garny '' Date: Thu Mar 29 15:33:09 2018 +1300 PMR Workspaces window: fixed a problem that resulted in the the window being empty until reauthentication '(closes' '#1581).' commit edda62f9feb20c65ecb9304ba8ef32a0dc0b696d Author: Alan Garny '' Date: Thu Mar 29 15:02:12 2018 +1300 Slight update to our downloads page '(#1581).' commit a3cff3dd199316f96d85afcc4fe0ea8c800eddb5 Author: Alan Garny '' Date: Thu Mar 29 14:59:39 2018 +1300 PMR Workspaces window: show warning/information messages that get generated at startup '(#1581).' commit 9132ea6bd394b940c88a3a6f787c4d882b9f14e6 Author: Alan Garny '' Date: Thu Mar 29 14:33:48 2018 +1300 Some minor cleaning up. commit 87132002a13e67b4dfca783281592c5d81aa9501 Author: Alan Garny '' Date: Thu Mar 29 14:11:11 2018 +1300 Some minor refactoring. commit 1e2f43822ba6559925c6e720bfb50134f7791fc6 Merge: 8eb9a946f 33554910b Author: Alan Garny '' Date: Thu Mar 29 12:06:16 2018 +1300 libgit2: upgraded to version 0.27.0 '(closes' '#1588).' commit 33554910bde8c847513692e49d147fa2f46d8ea9 Author: Alan Garny '' Date: Thu Mar 29 11:19:14 2018 +1300 Slight update to our downloads page '(#1588).' commit b3127b34861bdeef4e2afe24208730a4911dd4d5 Author: Alan Garny '' Date: Thu Mar 29 11:17:00 2018 +1300 'Don'\''t' build libgit2 only anymore '(#1588).' commit a7d472709f73ad0b67508bbb453048ac01827364 Author: Alan Garny '' Date: Thu Mar 29 11:12:58 2018 +1300 libgit2: generated binaries for version 0.27.0 '(#1588).' commit 0c05243de8c459b8749a941716b5f079d18808da Author: Alan Garny '' Date: Thu Mar 29 10:34:21 2018 +1300 libgit2: getting ready to build version 0.27.0 '(#1588).' commit 57e1ef6162017522201a0e293518edf44107b6af Author: Alan Garny '' Date: Thu Mar 29 10:32:01 2018 +1300 libgit2: getting ready to build version 0.27.0 '(#1588).' commit aed7aa96037232a33fc4cd7ca39f67645c2377a6 Author: Alan Garny '' Date: Thu Mar 29 10:29:03 2018 +1300 libgit2: getting ready to build version 0.27.0 '(#1588).' commit c2f211b61bf18eeaca4ee68e47c84b8903ec6edc Author: Alan Garny '' Date: Thu Mar 29 10:27:43 2018 +1300 Build libgit2 only '(#1588).' commit 8eb9a946fa9f2431b359b7f399997fb91d621718 Merge: 504b47e3c 315a54878 Author: Alan Garny '' Date: Wed Mar 28 14:58:22 2018 +1300 libgit2: have libgit2 use our copy of zlib rather than the one provided by the system '(closes' '#1577).' commit 315a548780c59271e1bca6012e04ae7150499249 Author: Alan Garny '' Date: Wed Mar 28 14:15:43 2018 +1300 Slight update to our downloads page '(#1577).' commit fb3baaf6c92fbfd75d3f04e686c4d89a2ec7ba2c Author: Alan Garny '' Date: Wed Mar 28 14:13:07 2018 +1300 'Don'\''t' only build libgit2 '(#1577).' commit 58bd039195489a8e555034ba04f7c13d78f433c3 Author: Alan Garny '' Date: Wed Mar 28 14:12:27 2018 +1300 libgit2: new binaries that take advantage of our copy of zlib '(#1577).' commit ca0a4d223255db1f0ff28b109879d9abde184be6 Author: Alan Garny '' Date: Wed Mar 28 13:56:05 2018 +1300 libgit2: use our copy of zlib rather than the one provided by the system '(#1577).' commit e0c9b3ac75174ef89ecfbcef170d3a13ad8b1c1f Author: Alan Garny '' Date: Wed Mar 28 13:01:22 2018 +1300 Build libgit2 only '(#1577).' commit 1b07c82dddfba80b6f8d173fd7f8f46408aca2e4 Author: Alan Garny '' Date: Wed Mar 28 12:59:56 2018 +1300 libgit2: use our copy of zlib rather than the one provided by the system '(#1577).' commit 504b47e3c445218527fa070736bfde453f6166df Merge: 9fa1da54e 23b79390d Author: Alan Garny '' Date: Wed Mar 28 12:45:32 2018 +1300 OpenSSL: upgraded to version 1.0.2o '(closes' '#1589).' commit 23b79390d357a393eb63581bec28e75226e15dfb Author: Alan Garny '' Date: Wed Mar 28 11:47:36 2018 +1300 Slight update to our downloads page '(#1589).' commit 70c6165d810784237be64806b00df49a6df94de7 Author: Alan Garny '' Date: Wed Mar 28 11:46:58 2018 +1300 OpenSSL: generated the different binaries for version 1.0.2o of OpenSSL '(#1589).' commit ff853860498c831cbd9b77ebf8084efb3c10fa1d Author: Alan Garny '' Date: Wed Mar 28 11:39:20 2018 +1300 Stop building OpenSSL only '(#1589).' commit deb42594c3a38f940a627e069279f01863b6ce1f Author: Alan Garny '' Date: Wed Mar 28 11:17:10 2018 +1300 OpenSSL: now build version 1.0.2o of OpenSSL '(#1589).' commit 05ddd8b9d03b2ca74e1ba1cac04fedcdd974c9f8 Author: Alan Garny '' Date: Wed Mar 28 11:10:16 2018 +1300 Building OpenSSL only '(#1589).' commit 9fa1da54eec0a0bc1f76c42cdb37827666c03419 Merge: c182552e8 a105cbbb8 Author: Alan Garny '' Date: Sun Mar 25 18:43:59 2018 +1300 Various minor improvements. commit a105cbbb80cef1ad067f9930604dbf41d662fc0c Author: Alan Garny '' Date: Sun Mar 25 18:02:17 2018 +1300 'Don'\''t' build libgit2 manually anymore. commit db033f00ee0add0c2ed37a70cc0ed87bcdbd73c5 Author: Alan Garny '' Date: Sun Mar 25 17:57:31 2018 +1300 Had to rebuild our macOS copy of OpenSLL '(after' I deleted it by 'mistake!).' commit 0b2e15133f4ecb334d89460a4b95977dd6a0338a Author: Alan Garny '' Date: Sun Mar 25 16:17:18 2018 +1300 libgit2: only define APPLESECURITY when on macOS. commit 17037314a489cf8031f01d002084ab3dacb67f94 Author: Alan Garny '' Date: Sun Mar 25 16:08:36 2018 +1300 '(Temporarily)' build libgit2. commit ede4dd3752c6d9c56928b0cee6172a8b488ec6de Author: Alan Garny '' Date: Sun Mar 25 15:59:47 2018 +1300 libgit2: make sure that we officially rely on OpenSSL. This is mainly so that our Plugins dialog shows that dependency, not least since that OpenSSL is currently only used by our copy of libgit2. commit c182552e8c859d0ec7789b493c975f18045e7a97 Author: Alan Garny '' Date: Sun Mar 25 15:06:59 2018 +1300 Some minor cleaning up '[ci' 'skip].' commit ad98a5f343483db03a22595cc0d272f6e4c5ddb1 Merge: c3fb272ac 035dc5fa9 Author: Alan Garny '' Date: Sat Mar 24 21:15:29 2018 +1300 PMR support: updated the description of our different PMR instances '(closes' '#1583).' commit 035dc5fa996476c40da3615b58fe35745d5d33ad Author: Alan Garny '' Date: Sat Mar 24 20:13:02 2018 +1300 Slight update to our downloads page '(#1583).' commit 0ac7c758517d420c67d87180ad77b2edccdcb6cb Author: Alan Garny '' Date: Sat Mar 24 20:11:39 2018 +1300 PMR support: updated the description of our different PMR instances '(#1583).' commit c3fb272ac02050777563500c5f61da97532d317e Merge: ac4fae0e2 8b1f95244 Author: Alan Garny '' Date: Sat Mar 24 19:51:35 2018 +1300 PMR support: fixed a problem with the PMR Workspaces window potentially not reflecting the Git status of a folder '(closes' '#1582).' commit 8b1f9524405b5b830a73dca517179368b64e568d Author: Alan Garny '' Date: Sat Mar 24 18:52:32 2018 +1300 Slight update to our downloads page '(#1582).' commit 6b8fc1df9b4e0de0d4c7409d639309df91729b79 Author: Alan Garny '' Date: Sat Mar 24 18:48:03 2018 +1300 PMR Workspaces window: can now only check/uncheck unstaged files in our synchronise dialog '(#1582).' commit cf79ca053407da73a4b6382df2a71c5dce27f77f Author: Alan Garny '' Date: Sat Mar 24 18:41:48 2018 +1300 PMR Workspaces window: slight improvement to the way we select file items in our synchronise dialog '(#1582).' Before, we could have file item '#1' selected, check file item '#2' '(which' is not 'selected)' and have file item '#1' automatically checked too while only file item '#2' should be checked. commit 270acccdcb5a6c7364d1b8bc2e403aab88a28b32 Author: Alan Garny '' Date: Sat Mar 24 18:37:50 2018 +1300 PMR Workspaces window: prevent staged files from being selectable in our synchronise dialog '(#1582).' commit ce7fef3d2f428493041b40e095e96a3fd1beb93a Author: Alan Garny '' Date: Sat Mar 24 16:19:00 2018 +1300 PMR Workspaces window: enable/disable unstaged/staged files in our synchronise dialog '(#1582).' commit f0ac46ed746b8e27dde3cabba26c47469d30fbff Author: Alan Garny '' Date: Fri Mar 23 12:15:37 2018 +1300 PMR Workspaces window: show our synchronisation dialog if we have staged files '(#1582).' commit 7ca77d3d6e8868f3bcbda9a7d33fec4fe51074f2 Author: Alan Garny '' Date: Fri Mar 23 12:14:28 2018 +1300 PMR Workspaces window: enable our Synchronise context menu if '(only)' some files have been staged '(in' a workspace we 'own;' '#1582).' commit 19f1d61eaebabe6c5c980a1df0460faea4e7c3ba Author: Alan Garny '' Date: Fri Mar 23 12:11:03 2018 +1300 PMR Workspaces window: now show the iStatus or wStatus of a folder/file '(#1582).' commit 70763e8ecbbc9afb1d0cb5508494532de08404bd Author: Alan Garny '' Date: Fri Mar 23 12:08:26 2018 +1300 PMR Workspaces window: added our iStatus icons '(#1582).' commit d0ee9a785ac731be9be08a52a85a0eb63f8c90ca Author: Alan Garny '' Date: Fri Mar 23 10:49:33 2018 +1300 PMR Workspaces window: can now show the staged '(in' addition to 'unstaged)' status of a workspace '(#1582).' commit 7ab495410bec8126bf2542120c265535169091d6 Author: Alan Garny '' Date: Fri Mar 23 09:59:34 2018 +1300 Some minor cleaning up. commit 706012df8aa265c9e216525aa481b2f1fc0ee6b0 Author: Alan Garny '' Date: Fri Mar 23 09:57:50 2018 +1300 Some minor cleaning up. commit 219d1ef9e85f2f969c54293f096f6a828779b631 Author: Alan Garny '' Date: Thu Mar 22 17:30:29 2018 +1300 Added a question mark iStatus icon '(#1582).' commit faea2093b1837512afb8032fbf49303a042c888e Author: Alan Garny '' Date: Thu Mar 22 17:08:51 2018 +1300 Readded our iStatus icons '(#1582).' commit a5522072f0c9152d8b433020e1de5c9ff20ae83a Author: Alan Garny '' Date: Thu Mar 22 16:50:12 2018 +1300 Some minor cleaning up. commit d282af0df792402a76833d53dec036b4f92f5602 Author: Alan Garny '' Date: Thu Mar 22 15:22:04 2018 +1300 PMR Workspaces window: slight improvement to the way we handle our synchronisation with PMR '(#1582).' commit f6c68c889a3399fcfd2dbb61f9f9d95742e96c3f Author: Alan Garny '' Date: Thu Mar 22 14:31:04 2018 +1300 Slight update to our downloads page '(#1574).' commit 2f3847890532d7faf83c618d2b5f9f2e61a8b4f2 Author: Alan Garny '' Date: Thu Mar 22 14:27:20 2018 +1300 Simulation Experiment view: fixed a problem with OpenCOR potentially crashing when reloading the view after a dependency file has been edited '(#1574).' commit 70f4815079087ac4279055b62141157d06213f3a Author: Alan Garny '' Date: Thu Mar 22 11:19:33 2018 +1300 Some minor cleaning up. commit ac4fae0e262a0f698ac1a36afe507384a078a8d6 Merge: 70f12a382 4d2796f9c Author: Alan Garny '' Date: Tue Mar 20 20:39:03 2018 +1300 Data store interface: fixed a problem with the returned size of a data store being wrong in some cases '(closes' '#1579).' commit 4d2796f9ca45c75399af50cde1807b0c3dba0b65 Author: Alan Garny '' Date: Tue Mar 20 19:10:20 2018 +1300 Slight update to our downloads page '(#1579).' commit cc6eb0e002cbcad190b4e3eda40daeeff705fbec Author: Alan Garny '' Date: Tue Mar 20 19:04:35 2018 +1300 Data store interface: make sure that our size is always accurate '(#1579).' Note: we $'don\342\200\231t' need to test mVoi anymore since it '(now)' always $'exists\342\200\246' commit 70f12a3823fa7c95c406f1c13e1f1cbd4acaa3eb Merge: 1edef40dd 5606f72fe Author: Alan Garny '' Date: Tue Mar 20 17:49:31 2018 +1300 Simulation Experiment view: prevent a model with no ODEs/DAEs from crashing OpenCOR '(closes' '#1576).' commit 5606f72feef3f9cc524a365bfdb43d237afd937e Author: Alan Garny '' Date: Tue Mar 20 17:13:54 2018 +1300 Slight update to our downloads page '(#1576).' commit 960ce63a3c2a1cad56c57fc2cbb8d616763b4ce3 Author: Alan Garny '' Date: Tue Mar 20 17:04:09 2018 +1300 Simulation Experiment view: prevent a model with no ODEs/DAEs from crashing OpenCOR '(#1576).' commit 1edef40dd0bb63f762bef3896f5b1424c2640892 Merge: 2d39554eb a3ba8584d Author: Alan Garny '' Date: Tue Mar 20 16:55:54 2018 +1300 libgit2: always link against our OpenSSL. commit a3ba8584dd99b308ef40329f85b4174cca02b592 Author: Alan Garny '' Date: Tue Mar 20 15:32:46 2018 +1300 Slight update. commit 2d39554eb73ec87c242294d856376dc4c303f54a Merge: 2da70a50a ce0cf70dd Author: Alan Garny '' Date: Tue Mar 20 15:23:18 2018 +1300 SED-ML support: fixed a problem with OpenCOR crashing when saving an empty SED-ML file '(closes' '#1572).' commit 3385f406d927a58a2b93d192140f4b66a05bb8ec Author: David Brooks '' Date: Tue Mar 20 15:08:47 2018 +1300 Update Linux libgit2 binaries '(#1571).' commit db51481b108ca2e8c8fe2e0bcec582574bec0b6e Author: David Brooks '' Date: Tue Mar 20 14:34:35 2018 +1300 Update macOS and Windows libgit2 binaries '(#1571).' commit ce0cf70ddccd36a963a77bede1112160f6088d51 Author: Alan Garny '' Date: Tue Mar 20 14:09:39 2018 +1300 Slight update to our downloads page '(#1572).' commit a1369977b0e4e4c4f262acfa8d3ca0cbade81241 Author: Alan Garny '' Date: Tue Mar 20 14:05:57 2018 +1300 Simulation Experiment view: only export our simulation to a SED-ML file if we are not dealing with a new SED-ML file '(#1572).' Otherwise, we just copy the contents of our new '(temporary)' file to the new file itself. commit 9513dc044422a427f07dfb295b78d4f5cd646097 Author: Alan Garny '' Date: Tue Mar 20 14:04:52 2018 +1300 Simulation Experiment view: make sure that we return a suitable default file extension. Indeed, our Simulation Experiment view supports both CellML and SED-ML files, so we must return a default file extension based on the type of the current file. commit aae2c0e14d9a95637b6044b6400a1037651d3980 Author: David Brooks '' Date: Tue Mar 20 13:04:30 2018 +1300 Use our OpenSSL for all platforms '(#1571).' commit 4a8e228b5965e60d8d3960953da495050e11fadb Author: Alan Garny '' Date: Tue Mar 20 13:10:01 2018 +1300 Simulation Experiment view: make it possible to save a new SED-ML file. The downside is that the SED-ML is invalid since it $'doesn\342\200\231t' contain everything it should. So, when it comes to saving a new SED-ML file using the Simulation Experiment view, we should just save our default SED-ML template, i.e. as if we were to save the SED-ML file using the Raw SED-ML or Raw Text view. commit ab7c0e0a220eb30a4c927580dad15848b9d6d8ef Author: Alan Garny '' Date: Tue Mar 20 11:14:17 2018 +1300 Simulation support: make sure that we have a runtime when checking whether some simulation data have changed '(#1572).' commit fd56efa29200fe719201242f8078d5e31a9392d7 Merge: 9e9a57f7e 2da70a50a Author: Alan Garny '' Date: Sat Mar 17 13:07:44 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 2da70a50a9549dba9b9c577fb6f1d0f265c7d274 Merge: 183335b11 b8f9e502b Author: Alan Garny '' Date: Sat Mar 17 13:06:46 2018 +1300 Some minor cleaning up. commit b8f9e502b29126a94b5a21fe6bfd92aef681da23 Author: Alan Garny '' Date: Sat Mar 17 12:27:47 2018 +1300 Some minor cleaning up. commit 9e9a57f7e3cbe195716776303939fb7ca4f5623d Merge: 15d085c34 183335b11 Author: Alan Garny '' Date: Sat Mar 17 12:00:48 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 183335b119d872112198cf5e7175e8a6b86b7d55 Merge: db6d64f58 43c4bade3 Author: Alan Garny '' Date: Sat Mar 17 11:36:50 2018 +1300 New snapshot. commit 43c4bade311dcd63cc9de98ed17c057c51f72aed Author: Alan Garny '' Date: Sat Mar 17 11:05:21 2018 +1300 New snapshot. commit db6d64f58d6d7eb845ab2e4cbbeaae287d9836fc Merge: 357dce2e9 becebeaa8 Author: Alan Garny '' Date: Sat Mar 17 11:03:34 2018 +1300 SED-ML support: now provide better error messages '(closes' '#1556).' commit becebeaa817780dfe00107410ca2af79ef552976 Author: Alan Garny '' Date: Sat Mar 17 10:27:15 2018 +1300 Slight update to our downloads page '(#1556).' commit 0cd03546106e5005d2f9e37c33401ceb22765a9f Author: Alan Garny '' Date: Sat Mar 17 10:25:04 2018 +1300 SED-ML support: provide better error messages '(#1556).' commit 15d085c34df53e6ad4bbdc4812bf2a77d031bb13 Merge: 962405ce6 357dce2e9 Author: Alan Garny '' Date: Fri Mar 16 18:18:09 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 357dce2e931f5526fe7d42a3a1d71216b385edf1 Merge: 623575b15 26604d169 Author: Alan Garny '' Date: Fri Mar 16 18:16:46 2018 +1300 PMR Workspaces window: improved the synchronisation with PMR in case the Internet connection drops '(closes' '#1566).' commit 26604d169de5d038ccb94e194176565dd724d2dd Author: Alan Garny '' Date: Fri Mar 16 16:27:40 2018 +1300 Slight update to our downloads page '(#1566).' commit 2ca9a8453bfe26d1f680aaebde44e1c946b0e763 Author: Alan Garny '' Date: Fri Mar 16 16:25:18 2018 +1300 PMR Workspace window: improved the synchronisation with PMR in case the Internet connection drops '(#1566).' commit 623575b154e159936f55d2ccd63f317570c58308 Merge: 7632e43ca 308e06697 Author: Alan Garny '' Date: Fri Mar 16 15:55:30 2018 +1300 PMR support: now provide a more meaningful error message when something goes wrong '(closes' '#1558).' commit 308e06697e9063be3471a32e7ee3a970b447be4d Author: Alan Garny '' Date: Fri Mar 16 15:20:20 2018 +1300 Slight update to our downloads page '(#1558).' commit 2231b6dada4b39fa981178b7dc8040795f697f3b Author: Alan Garny '' Date: Fri Mar 16 15:18:39 2018 +1300 PMR support: now provide the Git error message along our own one '(#1558).' commit 7632e43cacb0de1091e8e3814a068f51ebbf8281 Merge: d483165cc fe52c3357 Author: Alan Garny '' Date: Fri Mar 16 14:48:26 2018 +1300 PMR support: fixed a problem with folders being potentially wrongly tracked '(closes' '#1559).' commit fe52c33573cd44bf5a205a15809cc94384e144ba Author: Alan Garny '' Date: Fri Mar 16 14:14:49 2018 +1300 Slight update to our downloads page '(#1559).' commit a1b3840f065848c73e50a43c1c3bc12e3cdfecc4 Author: Alan Garny '' Date: Fri Mar 16 14:13:48 2018 +1300 Slight update to our downloads page '(#1559).' commit f6a7947c06e56ffc29d9cf6b8851a5a1d9fcb527 Author: Alan Garny '' Date: Fri Mar 16 14:10:50 2018 +1300 PMR support: fixed the algorithm that was supposed to retrieve the parent file node of a Git entry '(#1559).' commit 110834d513cea3faedcf580d10e046d57b40d66e Author: Alan Garny '' Date: Fri Mar 16 13:31:14 2018 +1300 PMR support: some minor cleaning up. commit 962405ce639492fa7393e6cc57a2a92b67554301 Merge: 3537688e1 d483165cc Author: Alan Garny '' Date: Fri Mar 16 11:14:30 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit d483165cc51ae5f596c6f412881a0a9653b0dd9c Merge: 08d80232c 540fe6b87 Author: Alan Garny '' Date: Fri Mar 16 11:13:33 2018 +1300 libgit2: upgraded to version 0.26.3 '(closes' '#1557).' commit 540fe6b87f91d6bfc4e11513e344ada74fa595ae Author: Alan Garny '' Date: Fri Mar 16 10:40:19 2018 +1300 Stop building libgit2 0.26.3 only '(#1557).' commit 431495fc24e529e8bba8d46c95b3e22638a73de8 Author: Alan Garny '' Date: Fri Mar 16 10:38:53 2018 +1300 libgit2: use our 0.26.3 binaries '(#1557).' commit 51bc744c4054ec83b35353aed1d7271c185977ce Author: Alan Garny '' Date: Fri Mar 16 10:32:11 2018 +1300 Build libgit2 0.26.3 only '(#1557).' We should have used the maint/v0.26 branch '(after' having updated 'it)!' Indeed, it includes a special version of '`git_clone()`,' which we need for OpenCOR. commit 16432813bd43f166cb01a28d1d54b2db82e1f020 Author: Alan Garny '' Date: Fri Mar 16 10:20:44 2018 +1300 libgit2: change our call to '`git_clone()`,' which signature has changed '(#1557).' commit 090d52fed71da1821efab067746c4797ced247ff Author: Alan Garny '' Date: Fri Mar 16 09:54:35 2018 +1300 Slight update to our downloads page '(#1557).' commit 6db26cf9bfae68a6a7de9c7adc92df39eceaf681 Author: Alan Garny '' Date: Fri Mar 16 09:52:13 2018 +1300 Stop building libgit2 0.26.3 only '(#1557).' commit 9c5e6f94479990a6048b4275a063dc03ea96b253 Author: Alan Garny '' Date: Fri Mar 16 09:51:17 2018 +1300 libgit2: use our 0.26.3 binaries '(#1557).' commit 7b4df075e8cc593c99b2b279338598d7447e8c60 Author: Alan Garny '' Date: Fri Mar 16 09:42:47 2018 +1300 Build libgit2 0.26.3 only '(#1557).' commit 3537688e16daf5364f1b09b06e8fbf773d207855 Merge: 2e36de889 08d80232c Author: Alan Garny '' Date: Thu Mar 15 19:29:21 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 08d80232cab46104188f22378a3670e3e841cf1c Merge: 9745bda87 592f73cc1 Author: Alan Garny '' Date: Thu Mar 15 19:28:01 2018 +1300 Simulation Experiment view: fixed a small regression problem with nothing being shown when running a simulation and then asking for a graph to be plotted '(closes' '#1560).' commit 592f73cc102009ba54b9819ab762fe84688bd6de Author: Alan Garny '' Date: Thu Mar 15 18:42:32 2018 +1300 Slight update to our downloads pages '(#1560).' commit ba47c8d4b171e86780e464ae2c57ba39d5eff815 Author: Alan Garny '' Date: Thu Mar 15 18:38:02 2018 +1300 Simulation experiment view: add '(and' 'populate)' the correct number of runs to a recently added graph if our simulation has some runs '(#1560).' commit 0cc9e80aafdaa4c8243b2147cf09834e5cbe4253 Author: Alan Garny '' Date: Thu Mar 15 17:58:33 2018 +1300 Simulation experiment view: add a run to a recently added graph if our simulation has some runs '(#1560).' commit ec772e312ded4af6231ae38878515958c581bd6e Author: Alan Garny '' Date: Thu Mar 15 17:57:51 2018 +1300 Some minor cleaning up. commit 2e36de8890ba3948d6d1ea646983e5f49cb71dd6 Author: Alan Garny '' Date: Thu Mar 15 15:41:38 2018 +1300 Editor widget: simplified things a bit with the icons of our find feature. commit 9487bbfdbfdc604d12092a3fbe9fe7690bfcc6b7 Merge: 82075eecf 9745bda87 Author: Alan Garny '' Date: Thu Mar 15 13:47:06 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 9745bda8791e42aaccb7df40b8ceba10c4c2a414 Author: Alan Garny '' Date: Thu Mar 15 13:45:15 2018 +1300 Added the 2018-02-01 changes to our previous snapshots page. commit 82075eecf1d55d4462b69452256efabcdb1a4e38 Author: Alan Garny '' Date: Thu Mar 15 13:33:22 2018 +1300 Editor widget: the clearing of our find/replace field can be done for us. commit a73d0a9a9d142d9caa5b886ad1828e2d07e13361 Author: Alan Garny '' Date: Thu Mar 15 11:10:05 2018 +1300 Upgraded our Oxygen icons to version 5.44.0. commit 8b573042d7d307bbb00795b5912b1f22cd8ac5c4 Author: Alan Garny '' Date: Wed Mar 14 15:53:07 2018 +1300 Updated our test SED-ML files. Since we moved them under '[OpenCOR]/models/tests/sedml.' commit 430f29750d782909c9fdb4ed6b89d2b903885138 Merge: 43df6af8e f3a5f50f1 Author: Alan Garny '' Date: Fri Mar 9 21:53:13 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit f3a5f50f14bb9b37387cbb44a1033d29c4334f9f Merge: 849d9b682 9177e5072 Author: Alan Garny '' Date: Fri Mar 9 21:51:06 2018 +1300 New snapshot. commit 9177e50720ce7eac15ddc4333900b0b483060a2b Author: Alan Garny '' Date: Fri Mar 9 18:40:06 2018 +1300 ZIP support: make sure that the extraction works on Windows. commit d4a5fa00fb947c0c7e952802c8c00d2b9ea9de82 Author: Alan Garny '' Date: Fri Mar 9 16:42:21 2018 +1300 New snapshot. commit 43df6af8ee82bcc9a86cd28b32c5e091b6f5b647 Merge: e6acd24ef 849d9b682 Author: Alan Garny '' Date: Fri Mar 9 16:39:40 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 849d9b68260a65e8930430d6c07a9e8e74d38e8b Merge: 29357b74e f4d322ea9 Author: Alan Garny '' Date: Fri Mar 9 16:38:41 2018 +1300 Fixed a problem that prevented, on Windows, a simulation from being exported to a COMBINE archive '(closes' '#1553).' commit f4d322ea922de6ed25a1b00be8e8fccf1594a061 Author: Alan Garny '' Date: Fri Mar 9 16:09:37 2018 +1300 Slight update to our downloads page '(#1553).' commit 1acee1f9b0cf8263619e3c74f0efaf1b54003b41 Author: Alan Garny '' Date: Fri Mar 9 04:05:34 2018 +0100 Replaced all our calls to 'nativeCanonicalXXX()' with 'canonicalXXX(),' and removed our 'nativeCanonicalXXX()' methods. commit d7bb0147768e6a306c86d9c006d30de1cb399d36 Author: Alan Garny '' Date: Fri Mar 9 15:50:05 2018 +1300 Replaced all our calls to 'nativeCanonicalXXX()' with 'canonicalXXX(),' and removed our 'nativeCanonicalXXX()' methods. commit 7184d6b77137cbb959db06b810e8d161cd18cd63 Author: Alan Garny '' Date: Fri Mar 9 15:17:59 2018 +1300 Replaced all our calls to 'nativeCanonicalXXX()' with 'canonicalXXX(),' and removed our 'nativeCanonicalXXX()' methods. commit 7d7735903aae638231d5978d8c825e7c4eff89d7 Author: Alan Garny '' Date: Fri Mar 9 02:29:21 2018 +0100 Added some Core functions '(canonicalDirName(),' 'canonicalFileName()' and 'canonicalFileNames()).' commit a96d3b84f44d6cece67cd72b572672cbb0e5a197 Author: Alan Garny '' Date: Fri Mar 9 02:05:23 2018 +0100 Get our plugins to load properly, following commit 0305a4b. commit a140cea4f235a52ad553385e2fd13d2f3961a922 Author: Alan Garny '' Date: Fri Mar 9 02:01:55 2018 +0100 Some minor cleaning up. commit d02db7f5b175def047db4d65a01cb77f7a60ecb6 Author: Alan Garny '' Date: Fri Mar 9 01:20:43 2018 +0100 Some minor cleaning up. commit e6acd24ef718cb53b2f4d83e3e1416dabe27507f Author: Alan Garny '' Date: Fri Mar 9 11:57:13 2018 +1300 Some minor cleaning up. commit 99b4ea9d9dee7717b06260ae8d0575df833b2695 Author: Alan Garny '' Date: Fri Mar 9 11:53:53 2018 +1300 Some minor cleaning up. commit 0305a4b83a5a9e781091d03281b321145239564a Author: Alan Garny '' Date: Fri Mar 9 11:17:58 2018 +1300 Replaced all our occurrences of 'QDir::separator()' with '"/".' Indeed, to use 'QDir::separator()' can cause problems in cross-platform code '(see' http://agateau.com/2015/qdir-separator-considered-harmful/ for 'example).' commit a51eae90ebf168412965cf524b98084f38d54751 Author: Alan Garny '' Date: Thu Mar 8 14:30:00 2018 +1300 Some minor cleaning up. commit 8b5a065fd3b31f041b03496f13ed478afee10bf0 Author: Alan Garny '' Date: Tue Mar 6 14:15:59 2018 +1300 Home page: added a link to our what is new and team pages '(#1544).' commit c9e52be091f63aad9e4ea8b9288cd9f093cbec8d Author: Alan Garny '' Date: Tue Mar 6 14:15:33 2018 +1300 Slight update to our team page '(#1544).' commit 2cbc49f4e96eb8421adbdb31f6be184895d60bfd Author: Alan Garny '' Date: Tue Mar 6 14:11:06 2018 +1300 Refer to our online version of the user and developer documentations '(#1544).' commit c2b665f867d444f945e489155a9b5fe57c081003 Merge: 3e39134ba 29357b74e Author: Alan Garny '' Date: Mon Mar 5 18:04:44 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit 29357b74e20cd29ec3bb35a42804d4d829c3761e Merge: a9022a3d0 e60684e00 Author: Alan Garny '' Date: Mon Mar 5 17:45:10 2018 +1300 QScintilla: upgraded to version 2.10.3 '(closes' '#1548).' commit e60684e0056c4d0ed7d4f555bc699585cf47c65d Author: Alan Garny '' Date: Mon Mar 5 17:11:26 2018 +1300 Stop building only the QScintilla package '(#1548).' commit 80602633503bb1c9dc55332f08db8e84f128cbb8 Author: Alan Garny '' Date: Mon Mar 5 17:09:57 2018 +1300 Slight update to our downloads page '(#1548).' commit 8f6bb88d2b7db7883ab3db242e41cd9bc5396946 Author: Alan Garny '' Date: Mon Mar 5 16:52:26 2018 +1300 Slight update to our third-party libraries page '(#1548).' commit 5b8a5d70ac0a34749a4085bac3fdae640ce28ec2 Author: Alan Garny '' Date: Mon Mar 5 16:52:02 2018 +1300 QScintilla package: updated our Windows, Linux and macOS binaries '(#1548).' commit 231852e2bd87512aaa2ce159833d6a0f857c71e6 Author: Alan Garny '' Date: Mon Mar 5 16:42:26 2018 +1300 Slight update to our QScintilla CMakeLists.txt file so that we can now build QScintilla 2.10.3 '(#1466).' commit dbcc4613532a559cc2ce1c96eacfa7054be62786 Author: Alan Garny '' Date: Mon Mar 5 14:03:12 2018 +1300 Some minor cleaning up. commit 80936a69cd00e83d7bdd7b2647919f85c91300b8 Author: Alan Garny '' Date: Mon Mar 5 11:55:52 2018 +1300 Only build the QScintilla package '(#1548).' commit 3e39134ba5839c9fca0a45ac6dc56aca188846f4 Merge: bd494c9c5 a9022a3d0 Author: Alan Garny '' Date: Fri Mar 2 21:46:58 2018 +1300 Merge branch ''\''master'\''' into issue1544. commit a9022a3d0f89e4e262e3996841e58425dbbcfd2d Merge: 0c6f407d5 305d03ad7 Author: Alan Garny '' Date: Fri Mar 2 21:42:36 2018 +1300 Simulation support: a change in a model parameter now results in a solver being reinitialised '(closes' '#1549).' commit 305d03ad75957307031eabac56280f010f0c6bb0 Author: Alan Garny '' Date: Fri Mar 2 18:18:43 2018 +1300 Slight update to our downloads page '(#1549).' commit 66a77408e4847fa2de289a22f7326833dc9901c7 Author: Alan Garny '' Date: Fri Mar 2 16:28:16 2018 +1300 Simulation support: get a solver to reinitialise itself when one or several model parameters have been modified '(#1549).' commit 11d48a09bd7b6d1a1c83eb3ab4d925aab2535ecb Author: Alan Garny '' Date: Fri Mar 2 15:19:30 2018 +1300 Simulation support: reinitialise our solver, if needed, at the beginning of our forever loop. Not sure why it used to be at the end of our forever loop since it clearly ought to be at the beginning '(to' ensure that our call to 'OdeSolver::solve()' is 'right).' commit bd494c9c58b072123ac5a6e0ab246111611e1dbc Author: Alan Garny '' Date: Wed Feb 14 15:04:17 2018 +0100 Moved our original developer functional test files to '[OpenCOR]/models/tests' '(#1544).' It makes it easier to reference from our $'\342\200\234new\342\200\235' developer documentation. commit 6895ec27c0191bfa3cdad1ea984063e97fee0b3f Author: Alan Garny '' Date: Tue Feb 13 14:39:25 2018 +0100 Removed Google Code Prettify, KaTeX and some Oxygen images '(#1544).' We $'don\342\200\231t' use those anymore in the documentation tracked in this Git repository. Note: we will have to see what our doc/OpenCOR.qhp file should really list once we are done with the user $'documentation\342\200\246' commit ffee9778ae985eae0af8ef165726c2d9a4431772 Merge: 0a27a3077 0c6f407d5 Author: Alan Garny '' Date: Tue Feb 13 14:00:55 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 0c6f407d5f94f9c32b9887fc552c88de80cbcb36 Merge: 38f16d9c3 ddb47b91e Author: Alan Garny '' Date: Tue Feb 13 13:58:17 2018 +0100 Some minor cleaning up. commit ddb47b91ecbeccd0d8a4295300eb74be1d1146c3 Author: Alan Garny '' Date: Tue Feb 13 13:24:03 2018 +0100 Have one sentence per line. This makes it easier to diff. commit 26ba1b85ba5c483db390b34f831e8ea263e3260c Author: Alan Garny '' Date: Tue Feb 13 13:18:25 2018 +0100 Use _ rather than __ for our reST links. commit 0a27a30770fd390c7fc25de5c247dfd012c7ec6e Author: Alan Garny '' Date: Mon Feb 12 16:57:43 2018 +0100 Used _ rather than __ for our reST links. commit 46cb981f52959ee9d4365180cc4b9ce0e55df167 Merge: 6df388a7a 38f16d9c3 Author: Alan Garny '' Date: Mon Feb 12 15:38:57 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 38f16d9c3b94f031ea9b1e4dbc611e264ef5ad42 Author: Alan Garny '' Date: Mon Feb 12 15:37:54 2018 +0100 Some minor cleaning up. commit 6df388a7a2e5e3ad94929518149a3ec9bb2bbf81 Merge: 27d7d9782 21aba2d6b Author: Alan Garny '' Date: Mon Feb 12 13:01:09 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit 21aba2d6bb542846b04ba97a5d5b9132d67533c1 Merge: a015be07e f8bc08443 Author: Alan Garny '' Date: Mon Feb 12 12:59:01 2018 +0100 CMake files: made sure that all our macros are now in lowercase form. commit f8bc08443d6b600711078375bd38a8ae7603643f Author: Alan Garny '' Date: Mon Feb 12 11:24:38 2018 +0100 CMake files: made sure that all our macros are now in lowercase form. commit 27d7d9782193928e8ca85cecb6fd58aa167708f9 Merge: 2988fcbb1 a015be07e Author: Alan Garny '' Date: Fri Feb 9 19:24:48 2018 +0100 Merge branch ''\''master'\''' into issue1544. commit a015be07ea5fb02b1f56fc3e97d4c632be82b494 Merge: aea12c728 0176596cb Author: Alan Garny '' Date: Fri Feb 9 19:24:03 2018 +0100 Converted CMake-language commands and our CMake macros to lower case. commit 0176596cb8b87873e5b3bb019e54f04489b1f82f Author: Alan Garny '' Date: Fri Feb 9 18:52:34 2018 +0100 Converted our CMake macros to lower case. Ancient CMake versions required upper-case commands. Later command names became case-insensitive. Now the preferred style is lower-case. See https://github.com/Kitware/CMake/commit/77543bd. commit a558cd0211427a5e66b79709c629d0daa8e2f847 Author: Alan Garny '' Date: Fri Feb 9 18:39:51 2018 +0100 Converted CMake-language commands to lower case. Ancient CMake versions required upper-case commands. Later command names became case-insensitive. Now the preferred style is lower-case. See https://github.com/Kitware/CMake/commit/77543bd. commit 2988fcbb13029dcac32dd7ab3e753cec609fdba6 Author: Alan Garny '' Date: Wed Feb 7 17:18:38 2018 +0100 Cleaned up our '[OpenCOR]/doc' structure '(#1544).' commit e21b08a1d49b88013c469441762c0db4ef29e034 Author: Alan Garny '' Date: Wed Feb 7 14:10:36 2018 +0100 Some minor cleaning up. commit 99348c9f9a9a238ab51b79384f641a6154832294 Author: Alan Garny '' Date: Wed Feb 7 13:52:19 2018 +0100 Removed both our user and developer documentations '(#1544).' commit aea12c728266dbcddb185db523a1cab580965a4a Merge: 270c8b9a1 10a410772 Author: Alan Garny '' Date: Wed Feb 7 11:08:08 2018 +0100 Update the documentation in preparation for the OpenCOR 0.6 release '(#1542).' We merely update our master branch with changes that we started as part of issue '#1542,' but which are now going to be completed in issue '#1544.' commit 10a4107729a68f2c014d046a6cb2d2b3349fb348 Author: Alan Garny '' Date: Tue Feb 6 11:00:00 2018 +0100 Slight update to our coding style page '(#1542).' commit b51ee8beacc30c308950d433153cdccd08395cac Author: Alan Garny '' Date: Mon Feb 5 17:55:39 2018 +0100 Slight updates to our develop page '(#1542).' commit 59ad2ad75d1a81155f96cdc5c775d2fd6d83112e Author: Alan Garny '' Date: Mon Feb 5 17:25:28 2018 +0100 Slight updates to our file structure page '(#1542).' commit b161b56e36d3cb3ae4c3a90489ddfa21787664b7 Author: Alan Garny '' Date: Mon Feb 5 17:16:15 2018 +0100 Slight update to our prerequisites page '(#1542).' commit 13ac1a20c7ffc2d39765b7e4fece0eca68266906 Author: Alan Garny '' Date: Mon Feb 5 11:54:58 2018 +0100 Slight update to our downloads page '(#1542).' commit 712206f655737f2cfd3883c48a33eeb485e3fd84 Author: Alan Garny '' Date: Fri Feb 2 14:02:31 2018 +0100 Slight update to our third-party libraries page '(#1542).' commit 9adcaeebd5c40be438bae535d925060eb91535f4 Author: Alan Garny '' Date: Fri Feb 2 13:54:41 2018 +0100 Google code prettify: updated it to commit 05ad1b7 and customised it a bit '(#1542).' commit 270c8b9a11ed0e17818831b4ed4f9b308aba0ee4 Merge: ef036a0fa 741e7a985 Author: Alan Garny '' Date: Thu Feb 1 17:43:43 2018 +0100 New snapshot. commit 741e7a9850f0a476d8d2ead0bb1e6623b7970b0a Author: Alan Garny '' Date: Thu Feb 1 17:11:39 2018 +0100 New snapshot. commit ef036a0fa2e82bfba0884ce6a5dbebad83fa4564 Merge: 6015df254 bb82caa25 Author: Alan Garny '' Date: Thu Feb 1 17:09:26 2018 +0100 Simulation Experiment view: prevent the legend labels from disappearing upon clearing the simulation data '(closes' '#1537).' commit bb82caa25466c9cbaf5e401e03189cc71ec46442 Author: Alan Garny '' Date: Thu Feb 1 16:38:26 2018 +0100 Slight update to our downloads page '(#1537).' commit 3a2f2c7c00fc6b9848137da521ea001a34d38b16 Author: Alan Garny '' Date: Thu Feb 1 16:36:38 2018 +0100 Simulation Experiment view: prevent the legend labels from disappearing upon clearing the simulation data '(#1537).' commit 6015df2541eb7eb72fa625cbb543be94a3076179 Merge: 2b65c99a6 24c9e2acc Author: Alan Garny '' Date: Thu Feb 1 14:08:44 2018 +0100 Simulation Experiment view: prevent the clearing of simulation data from taking too long when we have several graph panels '(closes' '#1538).' commit 24c9e2acc890138fc29033347ffe3dac57f815bd Author: Alan Garny '' Date: Thu Feb 1 13:39:40 2018 +0100 Slight updates to our downloads pages '(#1538).' commit c9839a9cab1cf929ce62f5d36e06fc23003e5d08 Author: Alan Garny '' Date: Thu Feb 1 13:37:03 2018 +0100 Simulation Experiment view: prevent the clearing of simulation data from taking too long when we have several graph panels '(#1538).' commit 2b65c99a6df45d1f66e0b81979aa69eba7bbb0a6 Merge: b19a9a97f 6b03953c8 Author: Alan Garny '' Date: Wed Jan 31 18:15:07 2018 +0100 New snapshot. commit 6b03953c8082e81494e014be9c01b3bc3e09919b Author: Alan Garny '' Date: Wed Jan 31 17:41:14 2018 +0100 New snapshot. commit b19a9a97f564e46cc16921ef70723baf6cd32780 Merge: 7b70773ff 786586132 Author: Alan Garny '' Date: Wed Jan 31 17:38:38 2018 +0100 Simulation Experiment view: added support for multiple runs '(closes' '#1523).' commit 78658613229cad7539d2cc30fab4cae1c4771f66 Author: Alan Garny '' Date: Wed Jan 31 17:05:04 2018 +0100 Graph panel widget: no space between our legend items '(#1523).' Indeed, on macOS it was fine, but on Windows and Linux there was some space, which meant that after a few runs of doc/developer/functionalTests/res/sedml/noble_1962_local.sedml, we would see a scrollbar for the two bottom graph panels '(since' they have 3 graphs each while the first graph panel has only 'one).' commit 4deb3e5b9590e72f228cd48f542afa4f8b04ea40 Author: Alan Garny '' Date: Wed Jan 31 17:04:48 2018 +0100 Some minor cleaning up. commit 84dc07b30df3d906481094d0a396a2d0bc327a86 Author: Alan Garny '' Date: Wed Jan 31 16:45:56 2018 +0100 Slight updates to our downloads and what is new pages '(#1523).' commit 0aa0e7e2ea8a0a4c93da97da18229469432edfb3 Author: Alan Garny '' Date: Wed Jan 31 16:00:34 2018 +0100 CSV data store: output the data of all the runs and not always that of the last run '(#1523).' commit 7789ec45612742b9b50241dcf0c4b28609717152 Author: Alan Garny '' Date: Wed Jan 31 15:58:44 2018 +0100 Some minor cleaning up. commit 63e87f630c065f0e633f4eb4aead2c97ceefc38e Author: Alan Garny '' Date: Wed Jan 31 14:52:58 2018 +0100 Some minor cleaning up. commit 468dd3c5c1d987198e0b8ead49980548d012cdd6 Author: Alan Garny '' Date: Wed Jan 31 14:27:49 2018 +0100 Some minor cleaning up. commit 870efed1b7ebb0f2bcee1cb4ce9f0f456a638574 Author: Alan Garny '' Date: Wed Jan 31 14:24:40 2018 +0100 Graph panel widget: show only one instance of a 'graph'\''s' legend '(#1523).' Indeed, Qwt creates a legend widget for every single graph, which means that if we have three runs then we will have three legend widgets while we only want one of them. commit 0056d450e2ae4912fa6e37bad9ad30935d6303f5 Author: Alan Garny '' Date: Wed Jan 31 11:53:49 2018 +0100 Some minor cleaning up. commit 3f62ff9d1da5a04037f84ddc5d4c29ff97622df9 Author: Alan Garny '' Date: Wed Jan 31 11:52:28 2018 +0100 Graph panel widget: improved 'boundingRect()' and 'boundingLogRect()' methods '(#1523).' commit 6cbc3587fce44464f5eba878f682dd199383e52f Author: Alan Garny '' Date: Tue Jan 30 17:19:52 2018 +0100 Some minor cleaning up. commit 44cf95bb23e4ffa88d53371b04cb3bdd9af693af Author: Alan Garny '' Date: Tue Jan 30 17:04:25 2018 +0100 Graph panel widget: make sure that our new default run '(upon' resetting our 'runs)' is properly customised '(#1523).' commit 47cddceddf8758dc842fc1838f8a4b14546b7dd8 Author: Alan Garny '' Date: Tue Jan 30 16:32:28 2018 +0100 Graph panel widget: make sure that a run has some data before using it to compute our bounding rectangle '(#1523).' commit 0cecf4b407c4e5ed8fb01002c0938e6ccfccf275 Author: Alan Garny '' Date: Tue Jan 30 16:31:26 2018 +0100 Some minor cleaning up. commit 1f37dd91eca59a7cccb0d53f59b8e3d3c02a4fce Author: Alan Garny '' Date: Tue Jan 30 15:53:32 2018 +0100 Simulation support: make sure that our results have a data store before returning its size '(#1523).' commit 136c98f668b06a837d836583a04a8859c31dc6a1 Author: Alan Garny '' Date: Tue Jan 30 15:42:48 2018 +0100 Simulation support: 'don'\''t' try to create a data store for our results if we 'don'\''t' have a runtime '(#1523).' commit b0e14ab873ece46c64ec3874002d82ef6ca0784f Author: Alan Garny '' Date: Tue Jan 30 15:14:06 2018 +0100 Some minor cleaning up. commit eba2e2a55056c8d0ca519b396af06e383f9d47c3 Merge: 3c67d02a9 7b70773ff Author: Alan Garny '' Date: Tue Jan 30 11:48:16 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit 7b70773ffa3e98fa2a9dbe3c2b814b19d2ed47ab Merge: 80da4af2d 632cfe967 Author: Alan Garny '' Date: Tue Jan 30 11:47:15 2018 +0100 Simulation support: addressed a problem with fixing and then saving a previously invalid simulation '(closes' '#1533).' commit 632cfe96701caad2dd645365c01ed154f39947f8 Author: Alan Garny '' Date: Tue Jan 30 11:08:34 2018 +0100 Travis CI: re-disabling macOS builds. Well, the reason it is going much better is that they are now only accepting one macOS job at a 'time!' Now, because we need both release and debug builds, it means that it takes twice as long to build as it used to, which is not ideal. So, re-disabling macOS $'builds\342\200\246' ':(' commit fdcb2369d45d76aba985c70bdd42fb9f574d2c37 Author: Alan Garny '' Date: Tue Jan 30 10:59:48 2018 +0100 Travis CI: re-enabling macOS builds. It seems to be going much better, $'so\342\200\246' commit 2ff1981cdb2b24ed5bb1e5218f5973ccfbc9282c Author: Alan Garny '' Date: Tue Jan 30 10:46:10 2018 +0100 Slight update to our downloads page '(#1533).' commit 5ffd943aee991e16814c9d55e81b3359b4ef46a8 Author: Alan Garny '' Date: Tue Jan 30 10:44:28 2018 +0100 Simulation support: addressed a problem with fixing and then saving a previously invalid simulation '(#1533).' commit 3c67d02a9d352d94a225a5788fc476a27b15f4ae Author: Alan Garny '' Date: Mon Jan 29 19:55:44 2018 +0100 Graph panel widget: use the same symbols for different runs '(#1523).' commit 8498a1e30bfc593f39b222dc30127ca19f46f313 Author: Alan Garny '' Date: Mon Jan 29 18:49:38 2018 +0100 Simulation Experiment view: to clear our simulation data now reset all our runs, not only the last one '(#1523).' commit 94e529576ae721a80545a17791a384ff6f08839d Author: Alan Garny '' Date: Mon Jan 29 18:46:31 2018 +0100 Graph panel widget: our runs are freed automatically, so no need to free them ourselves '(#1523).' Not only that, but it also prevents potential problems for trying to free them 'twice!' commit 16696563052db86e4d40daeaac6aed1943dcb4fd Author: Alan Garny '' Date: Mon Jan 29 17:23:50 2018 +0100 Simulation Experiment view: added initial support for multiple runs '(#1523).' There are still some strange things going on '(e.g.' to clear the simulation data $'doesn\342\200\231t' remove the 'plots…!?).' commit 7c015fb5a998dca3688a4e6e62b4aa20c0954fc8 Author: Alan Garny '' Date: Mon Jan 29 16:40:13 2018 +0100 Graph panel widget: added support for multiple runs '(#1523).' Now, we $'\342\200\230just\342\200\231' need to make use of multiple runs from the SimulationExperiment view. commit fb259f61ffe601b77c0a44ae44a6b1b55ee22174 Author: Alan Garny '' Date: Mon Jan 29 11:50:18 2018 +0100 Some minor cleaning up. commit 3192b70eb3daf90b9869fef56ef5e4b62b57f9b7 Author: Alan Garny '' Date: Mon Jan 29 11:42:58 2018 +0100 Some minor cleaning up. commit 5b9ce9dd0256d8bd75ca96e64d5d919416296c58 Author: Alan Garny '' Date: Mon Jan 29 11:39:40 2018 +0100 BioSignalML data store: improved the progress of the export. commit b5729b4748026c461d2e21d5658c83af7bda9656 Author: Alan Garny '' Date: Mon Jan 29 11:26:22 2018 +0100 CSV data store: improved the progress of the export. commit bc8fbbc715d9c6af3e34b5cf94cce6011d035ec0 Merge: 990d7d78e 80da4af2d Author: Alan Garny '' Date: Sat Jan 27 22:15:46 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit 80da4af2d16226342ffb8c35456f6f4ffe41b4b1 Merge: 0f3cfcda5 6125537d6 Author: Alan Garny '' Date: Sat Jan 27 21:57:48 2018 +0100 Some minor cleaning up and improvement. commit 6125537d62c3ffbc564df4c693b68135901db675 Author: Alan Garny '' Date: Sat Jan 27 20:33:31 2018 +0100 Replaced qulonglong with quint64. Mainly to be consistent with our use '(and' that of 'Qt)' of qint64. commit d9c95bc716354a02ef6070257a67fe69d4d78cea Author: Alan Garny '' Date: Sat Jan 27 19:59:25 2018 +0100 Some minor cleaning up. commit 5381fe04ef09adc1e261cf5c34ecaa7ecef71e2a Author: Alan Garny '' Date: Sat Jan 27 19:58:51 2018 +0100 Slight improvement to our StandardFile class. commit 7bf0a6dec56152210de045e5f23ad17f85938a42 Author: Alan Garny '' Date: Sat Jan 27 19:57:59 2018 +0100 Some minor cleaning up. commit c88e3df172060fbc8406fc26c72c92249373e3b1 Author: Alan Garny '' Date: Sat Jan 27 19:42:25 2018 +0100 Some minor cleaning up. commit 2324f76d1c87082551ee186cb1d5f702b8fc5bef Author: Alan Garny '' Date: Sat Jan 27 19:38:48 2018 +0100 Make sure that all our signals make use of the OpenCOR namespace. This is mainly for consistency. commit 8409263853e656a10475af8fa140b742f6e8f708 Author: Alan Garny '' Date: Sat Jan 27 00:44:49 2018 +0100 Make sure that 'StandardFileManager::manage()' really checks that the file is not already managed. We removed the test in a recent commit, but that was clearly a mistake since 'doIsFile()' will return true if the file is already 'managed!' commit 990d7d78e9102a6950889a0ed23827755ebc3d94 Merge: 7f6873667 0f3cfcda5 Author: Alan Garny '' Date: Fri Jan 26 18:51:39 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit 0f3cfcda5b38f99619cf38b4d241ba1d73305f0c Merge: 67e1b9c53 81733e1c3 Author: Alan Garny '' Date: Fri Jan 26 18:48:22 2018 +0100 General: a new file '(with' no specific 'type)' is not wrongly considered to be a COMBINE archive anymore '(closes' '#1530).' commit 81733e1c32a5b57a60a07f983e03c88e16fe277c Author: Alan Garny '' Date: Fri Jan 26 18:12:05 2018 +0100 Slight update to our downloads page '(#1530).' commit ee5524f7828456242ab2b2f7974e4130c5645384 Author: Alan Garny '' Date: Fri Jan 26 18:10:20 2018 +0100 General: a new file '(with' no specific 'type)' is not wrongly considered to be a COMBINE archive anymore '(#1530).' commit 4bf0cbde106948494fabb23c81a47414252ea710 Author: Alan Garny '' Date: Fri Jan 26 17:24:21 2018 +0100 Some minor cleaning up. commit 169409ca162d3e9d9e3c2aa21da1bf76bacf8ae7 Author: Alan Garny '' Date: Fri Jan 26 17:10:50 2018 +0100 General: make sure that reloading a file involves checking that a file is indeed of the correct type '(#1530).' commit 4553cf7b150b92b44d4e931bc76fc794237aa086 Author: Alan Garny '' Date: Fri Jan 26 17:02:13 2018 +0100 General: make sure that reloading a file involves checking that a file is indeed of the correct type '(#1530).' commit 628282b41357e98243323665c970f91bd2052852 Author: Alan Garny '' Date: Fri Jan 26 16:41:34 2018 +0100 Some minor cleaning up. commit 7f6873667e61d743a4440848e1f003f2661da536 Author: Alan Garny '' Date: Thu Jan 25 17:17:33 2018 +0100 Simulation Experiment view: simplified our code a bit. commit 7a2189467f9ac80461ed11bbcbeb0af36d8727ff Author: Alan Garny '' Date: Thu Jan 25 15:23:21 2018 +0100 Some minor cleaning up. commit 6b9cdfbd782cd55711ad2c593c6c350d52ba5772 Author: Alan Garny '' Date: Thu Jan 25 15:16:08 2018 +0100 Some minor cleaning up. commit 99ea191e4b6ca5035bbcbca13e0be70540011361 Merge: f6cd94f13 67e1b9c53 Author: Alan Garny '' Date: Thu Jan 25 14:57:35 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit 67e1b9c53e9db227d7302faec797853ed64d63bb Merge: 5b17af28f fbcc120d1 Author: Alan Garny '' Date: Thu Jan 25 14:54:31 2018 +0100 SED-ML support: now support simulations with a great number of points '(closes' '#1528).' commit f6cd94f132b5908f727f8a8283e95ca0e287c58e Author: Alan Garny '' Date: Thu Jan 25 14:53:40 2018 +0100 BioSignalML data store: now support multiple runs '(#1523).' Note that we $'don\342\200\231t' set the duration of our recording anymore since it may contain more than one run. commit a7b7c82f71f57bcb3de75fc543e924aac4244e2d Author: Alan Garny '' Date: Thu Jan 25 11:35:43 2018 +0100 BioSignalML data store: can now re-export the last run '(#1523).' commit 40ff6b50831d2453d48a0f46d93508c2a3f3fb44 Author: Alan Garny '' Date: Thu Jan 25 11:26:51 2018 +0100 CSV data store: now support multiple runs '(#1523).' commit f9c9da57bc9f1b5532132eabe4de64344175600f Author: Alan Garny '' Date: Thu Jan 25 11:18:01 2018 +0100 Some minor cleaning up. commit 258666208132199ab08d0ca7bd43a3196dd663e8 Author: Alan Garny '' Date: Thu Jan 25 10:57:12 2018 +0100 Some minor cleaning up. commit 6fd46be5e5d0328cfda52376a40af64b0046ca02 Author: Alan Garny '' Date: Thu Jan 25 10:49:03 2018 +0100 Data store interface: some minor renaming '(#1523).' commit 90ad0261854d2f34ec72abb88fb1a1f4b8c7f005 Author: Alan Garny '' Date: Thu Jan 25 10:41:01 2018 +0100 Data store interface: keep track of our data store in our DataStoreData class '(#1523).' commit 4bca0e591b86ba799c399c2586660d3d710d92a3 Author: Alan Garny '' Date: Thu Jan 25 10:07:27 2018 +0100 Some minor cleaning up. commit fbcc120d109623cb519fa960cfd2a27147235c59 Author: Alan Garny '' Date: Thu Jan 25 09:59:15 2018 +0100 SED-ML support: allow simulations to have a great number of points '(#1528).' commit a07199531f752ae698bb0b6a8a5f1c8aaf73ec09 Author: Alan Garny '' Date: Thu Jan 25 09:53:47 2018 +0100 Some minor cleaning up. commit 5bc31933421312cea2e06f88f3338e7fcf2eb74d Author: Alan Garny '' Date: Wed Jan 24 18:31:46 2018 +0100 Data store interface: can now add and retrieve values '(#1523).' commit 9e6922f40a211b1fbe7a5ee22a16269654c8df0d Author: Alan Garny '' Date: Wed Jan 24 18:00:32 2018 +0100 Data store interface: can now only add a variables / some variables to a data store if no runs 'haven'\''t' already been added to it '(#1523).' commit c66e0a4cdb92b264d14aadaef15b363f715ae984 Author: Alan Garny '' Date: Wed Jan 24 17:51:38 2018 +0100 Some minor cleaning up. commit ea8d6b0cd23050a91bb5daf84707811b726ab723 Author: Alan Garny '' Date: Wed Jan 24 17:47:37 2018 +0100 Data store interface: can now return the size of a given run '(#1523).' commit fe81f7f99868b22896629fd4171d705b80d4fae8 Author: Alan Garny '' Date: Wed Jan 24 17:26:22 2018 +0100 Data store interface: added an 'addRun()' method to our DataStoreVariable class '(#1523).' commit a53e949df4abc775b4c06fb68b6820f1294430fc Author: Alan Garny '' Date: Wed Jan 24 17:12:03 2018 +0100 Removed our 'resetList()' method. Only 'CellmlFile::reset()' was really taking advantage of it. commit 72350af5d7d14d61dd7e719e4955743c60a1fdb6 Author: Alan Garny '' Date: Wed Jan 24 17:09:45 2018 +0100 Some minor cleaning up. commit 3bb7fd5ca43d6c0d7c6c56e94d23f98c5713f0ea Author: Alan Garny '' Date: Wed Jan 24 16:54:00 2018 +0100 Some minor cleaning up. commit 924e65fbbac095e8593b7fea346b42d5d31d72a2 Author: Alan Garny '' Date: Wed Jan 24 15:40:43 2018 +0100 Data store interface: added the skeleton of an 'addRun()' method to our DataStore class '(#1523).' commit 431097afa7fe98ebf6d47698cabe7f4c7bb5dfb9 Author: Alan Garny '' Date: Wed Jan 24 15:24:50 2018 +0100 Data store interface: slight change to the signature of our 'DataStore::addVariables()' method '(#1523).' commit 7ef9b8c5507788d7f86dc195f2f527cd7d430e0c Author: Alan Garny '' Date: Wed Jan 24 15:23:36 2018 +0100 Some minor cleaning up. commit f4c1ebf1771d2e1f585bec8e4a2bae5d73fa7a5c Author: Alan Garny '' Date: Wed Jan 24 15:13:33 2018 +0100 Data store interface: removed DataStores '(#1523).' commit 8c0ee4943740e022e6c80ca6e58d47d38319bec2 Author: Alan Garny '' Date: Wed Jan 24 14:33:59 2018 +0100 Data store interface: 'don'\''t' pass all our data stores to DataStoreData '(#1523).' commit b33e1b1e4dd51a770ae204ae886a9247586f3722 Author: Alan Garny '' Date: Wed Jan 24 14:04:25 2018 +0100 Data store interface: 'don'\''t' create a data store with a capacity anymore '(#1523).' Indeed, we want a data store to hold one or several runs, and those runs may not all be of the same capacity '(e.g.' one run with a point interval of 1 and another of 0.1, for the same starting and ending 'points).' commit fa2fafb20c5197d5af3289fc13cdac499370ced0 Author: Alan Garny '' Date: Wed Jan 24 13:04:40 2018 +0100 Some minor refactoring '(#1523).' commit 923443b9a38159a42405ae7b24599aed9ddeebac Author: Alan Garny '' Date: Wed Jan 24 10:14:18 2018 +0100 Some minor cleaning up. commit 91a2a707f5e227021c2e18d1677cf650e594374b Author: Alan Garny '' Date: Tue Jan 23 17:12:02 2018 +0100 Data store: always have a VOI '(#1523).' commit 16421927e5c70c167dd2d3114c6165d03d293645 Merge: 5b951d430 5b17af28f Author: Alan Garny '' Date: Tue Jan 23 15:48:28 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit 5b17af28f0863e46c16e2bbc79ce895f184d9fbd Merge: d64a46ff1 72446696a Author: Alan Garny '' Date: Tue Jan 23 15:42:49 2018 +0100 Qt: upgraded to Qt 5.9.4 LTS '(closes' '#1526).' commit 72446696a5896d20e7721892d2a3056757452eaf Author: Alan Garny '' Date: Tue Jan 23 15:06:01 2018 +0100 Developer documentation: got our labels to follow the new Git colouring system. commit c4699628c11f948a4be3ba8c3aff635f225e010c Author: Alan Garny '' Date: Tue Jan 23 14:52:16 2018 +0100 Some minor cleaning up. commit d2819ef9547741283fdf50fe1b98f23c93b60db3 Author: Alan Garny '' Date: Tue Jan 23 14:51:37 2018 +0100 Some minor cleaning up. commit 4e67488eeb1784b2dd556a56af05ecd26f889c4c Author: Alan Garny '' Date: Tue Jan 23 14:47:20 2018 +0100 Developer documentation: got our '"Feature"' label to follow the new Git colouring system. commit 44f6b0503a1e384737b5ae837599ebb3d3b901b0 Author: Alan Garny '' Date: Tue Jan 23 14:16:17 2018 +0100 Slight upgrade to our downloads page '(#1526).' commit 8534769aa82115aa1eb8f6e11c8cb43421e77aee Author: Alan Garny '' Date: Tue Jan 23 14:15:00 2018 +0100 Slight update to our prerequisites page '(#1526).' commit 5b951d43098d0f52280bad80c5f94f15676dfda6 Author: Alan Garny '' Date: Mon Jan 22 18:08:06 2018 +0100 CSV data store: support multiple data stores '(#1523).' Make sure that it builds fine on Windows. commit 9ef1ff07ecc89292bed0a53fb2dfc5cbc530b645 Author: Alan Garny '' Date: Mon Jan 22 18:06:50 2018 +0100 CSV data store: support multiple data stores '(#1523).' Makes sure that we can output different runs with different point intervals, this without outputting the VOI. commit 39cf439de1508fd8d2a6bf17ba0e42c1fc44364a Author: Alan Garny '' Date: Mon Jan 22 17:58:25 2018 +0100 CSV data store: support multiple data stores '(#1523).' Makes sure that we can output different runs with different point intervals, this without outputting the VOI. commit 54b63474d8dea17988f40cafe4a576d5d058665f Author: Alan Garny '' Date: Mon Jan 22 17:46:07 2018 +0100 CSV data store: support multiple data stores '(#1523).' commit 32c6c4538d8c32fdbf91d1450aa9f2578bc4202b Author: Alan Garny '' Date: Mon Jan 22 14:24:24 2018 +0100 Some minor cleaning up. commit 9b2fe288717fecb78103b534644da99320ad492d Author: Alan Garny '' Date: Mon Jan 22 14:03:20 2018 +0100 Some minor cleaning up. commit 93bdd93a1385372717627215fd92b61ee46654ae Merge: fa481aaa2 d64a46ff1 Author: Alan Garny '' Date: Mon Jan 22 11:48:48 2018 +0100 Merge branch ''\''master'\''' into issue1523. commit d64a46ff1b03ec0f0e0ad97f3e0bbd1f8119aa9c Merge: e1d4374c8 0eb7ea94b Author: Alan Garny '' Date: Mon Jan 22 11:47:42 2018 +0100 jQuery: upgraded to version 3.3.1 '(closes' '#1524).' commit 0eb7ea94bf341177a6fd11018520a00b8ee7a785 Author: Alan Garny '' Date: Mon Jan 22 11:16:30 2018 +0100 Slight update to our third-party libraries page '(#1524).' commit a198ca09e97eae1e5bdb30f37d8cd2fdf444e9e4 Author: Alan Garny '' Date: Mon Jan 22 11:15:37 2018 +0100 jQuery: upgraded to version 3.3.1 '(#1524).' commit 373d535c34ab6c4b2a8596a50176d5905572257f Author: Alan Garny '' Date: Mon Jan 22 11:13:35 2018 +0100 Some minor cleaning up. commit fa481aaa2991a59abb9aef97cd0d21768df304f8 Author: Alan Garny '' Date: Mon Jan 22 11:11:40 2018 +0100 Some minor cleaning up. commit be6e59d8a4a8c44af1383691feb82bffbe7601e0 Author: Alan Garny '' Date: Mon Jan 22 11:07:37 2018 +0100 Some minor cleaning up. commit c3b23db8f833db4826413c148ae6f5dcf624af52 Author: Alan Garny '' Date: Mon Jan 22 11:00:46 2018 +0100 Some minor cleaning up. commit c3a2592c1210c8b1b879b017a506646eee2e50e1 Author: Alan Garny '' Date: Sat Jan 20 11:46:07 2018 +0100 Simplified our data store interface '(#1523).' commit 7c94b2b88f19904e95612d6b44a16bd23996f29e Author: Alan Garny '' Date: Fri Jan 19 13:31:28 2018 +0100 Some minor cleaning up. commit ea009ed53334321aba404b6839d1ae7752daf0b1 Author: Alan Garny '' Date: Fri Jan 19 10:45:27 2018 +0100 Simulation support: give access to all our data stores '(#1523).' commit 73f4a0d91579852c8cc63ce5cf7e6fa1251896af Author: Alan Garny '' Date: Fri Jan 19 10:44:40 2018 +0100 Some minor cleaning up. commit da85fda94aa3272bf5cb2d0d64cb91c4bb50246b Author: Alan Garny '' Date: Fri Jan 19 10:39:00 2018 +0100 Some minor cleaning up. commit a4e197cb3465a66ffe61ecd9f3353fc52711c033 Author: Alan Garny '' Date: Fri Jan 19 10:36:24 2018 +0100 Some minor cleaning up. commit ae54b463a82fb00e984d843d8d1eeaa6b29f75ed Author: Alan Garny '' Date: Fri Jan 19 10:28:42 2018 +0100 Some minor cleaning up. commit c1846e03e74a28987e45f667a354a702529c5df1 Author: Alan Garny '' Date: Mon Jan 15 16:50:09 2018 +0100 Revert '"Some' minor cleaning 'up."' This reverts commit 012ee5d4c09ce475d41120646187806dfdb7934f. commit 012ee5d4c09ce475d41120646187806dfdb7934f Author: Alan Garny '' Date: Mon Jan 15 15:41:08 2018 +0100 $'\020Some' minor cleaning up. commit edc590f5ad1cddbd125594c8be9bed4135196822 Author: Alan Garny '' Date: Mon Jan 15 14:54:41 2018 +0100 Simulation support: can now add a new run '(#1523).' commit ffa46750fa8d5c08f177f7e504218d40c2850953 Author: Alan Garny '' Date: Mon Jan 15 13:40:18 2018 +0100 Simulation support: added an 'addRun()' method to our Simulation class '(#1523).' This is just about refactoring code at this $'stage\342\200\246' commit e1d4374c87a3682ed8a7e4aed1337d19941cd338 Merge: 7ac99e445 d6eef4fb9 Author: Alan Garny '' Date: Mon Jan 15 11:16:39 2018 +0100 PMR window: properly refresh the list of public exposures when changing the PMR instance '(closes' '#1521).' commit d6eef4fb9aead810d5a345f1f6b6faee8612ba36 Author: Alan Garny '' Date: Mon Jan 15 10:42:26 2018 +0100 Slight update to our downloads pages '(#1521).' commit 2ba057c4c94f6753936fd058c8d553f69dc9b917 Author: Alan Garny '' Date: Mon Jan 15 10:38:33 2018 +0100 PMR window: properly refresh the list of public exposures when changing the PMR instance '(#1521).' commit 7ac99e44502d1a92fbf741df776791198725faae Merge: 352da1458 305ccd623 Author: Alan Garny '' Date: Fri Jan 12 19:14:21 2018 +0100 New snapshot. commit 305ccd6239cbc75dc2973bf82b83a93a31c3ec78 Author: Alan Garny '' Date: Fri Jan 12 18:42:27 2018 +0100 New snapshot. commit 62b0f5c1ee9d0ea0df99e3800fde393d32f8f97b Author: Alan Garny '' Date: Fri Jan 12 18:37:53 2018 +0100 KINSOL solver: prevent the solver from looping indefinitely when an ODE solver is badly set up. commit f87f7a579386afc3daf94221d875a3e364d569bd Author: Alan Garny '' Date: Fri Jan 12 17:36:12 2018 +0100 Simulation support: simplified our detection of modified simulation data. A state/rate that is not a finite number necessarily has a value that is different from its initial value. commit e5ea50fba6a5e9c9b9be08d41187c741f9b3cb26 Author: Alan Garny '' Date: Fri Jan 12 17:05:01 2018 +0100 Simulation Experiment view: improved the property type of our simulation properties. commit af5e819b948eaa444d48aa93f2560c62f60d5a70 Author: Alan Garny '' Date: Fri Jan 12 16:45:38 2018 +0100 Some minor cleaning up. commit 9cc356ee46f8fbb15f0b07d415bcf167bbf022a0 Author: Alan Garny '' Date: Fri Jan 12 16:37:10 2018 +0100 Solvers: rely on our new types of properties to set a 'solver'\''s' properties. commit 1e1f61451ecd3ce7513a31109db0607fffbd0fc1 Author: Alan Garny '' Date: Fri Jan 12 16:00:23 2018 +0100 Property editor: 'don'\''t' allow the value of a DoubleGt0 property to be empty. commit 6edb99230709f4a43e48e9fac978ba5e05f6226a Author: Alan Garny '' Date: Fri Jan 12 15:48:10 2018 +0100 Solver interface: allow for a solver property to be an integer/double greater or equal to zero. The idea is to match what is supported by our property editor. commit af0b87c7b81113e4b570376d7cf83b0b13ac62e9 Author: Alan Garny '' Date: Fri Jan 12 15:43:36 2018 +0100 Property editor: added support for properties for integers/doubles that are greater or equal to zero. commit 65ab8919266d1dd4412075c6b713b8411573a58f Author: Alan Garny '' Date: Fri Jan 12 15:28:39 2018 +0100 Property editor: fixed an issue with adding a DoubleGt0 property. commit a7cf1ca9b712f555da6ef948d2989a62385ab4c2 Author: Alan Garny '' Date: Fri Jan 12 15:27:54 2018 +0100 Property editor: fixed an issue with our integer validator. commit de829f12eb90207e677c20b319ab2e6c140dbc7e Author: Alan Garny '' Date: Fri Jan 12 14:48:35 2018 +0100 Some minor cleaning up. commit c441acd0adbcd2e6eb7c62e4147cd52f08efda21 Author: Alan Garny '' Date: Fri Jan 12 14:34:00 2018 +0100 Solver interface: allow for a solver property to be an integer/double greater than zero. The idea is to match what is supported by our property editor. commit b09835bda30b621a80b35699565743c6e327d07f Author: Alan Garny '' Date: Fri Jan 12 13:57:29 2018 +0100 Simulation support: only forward the first solver error we get. commit 8827ac789a3e4ecb75c6c2c8510fffd9a63407bb Author: Alan Garny '' Date: Fri Jan 12 10:14:39 2018 +0100 Simulation support: slight improvement to the way we handle elapsed time in our simulation worker. commit 1b14a83ec422db27e9daf0662ce5dbbb3b9b2321 Author: Alan Garny '' Date: Fri Jan 12 09:30:25 2018 +0100 Simulation support: improved the main work loop of our simulation worker. commit 352da145870f13e7e682362d721cfcc98b6f0260 Merge: 76cd7736b 3dfb15a20 Author: Alan Garny '' Date: Thu Jan 11 20:44:40 2018 +0100 Some minor cleaning up and improvement. commit 3dfb15a202809147888e198c0016d9e2531b19fb Author: Alan Garny '' Date: Thu Jan 11 19:34:54 2018 +0100 Simulation solver: slight improvement to our simulation worker. commit 54954f718672563c3471de56a5067ae6d4926320 Author: Alan Garny '' Date: Thu Jan 11 19:28:55 2018 +0100 Simulation support: use 'OdeSolver::reinitialize()' rather than 'OdeSolver::initialize()' '(#1515).' To use 'OdeSolver::initialize()' works fine, but 'it'\''s' unnecessary and may result in some memory leaks '(e.g.' with 'CVODES).' commit 76cd7736b47de73ea1ad5a82506ecacc8ee0d033 Merge: b6c4d8267 d53178442 Author: Alan Garny '' Date: Thu Jan 11 18:14:19 2018 +0100 Removed the IDAS solver '(closes' '#1515).' commit d531784422805eddc03d6e448199ec3ed873dc7e Author: Alan Garny '' Date: Thu Jan 11 17:36:54 2018 +0100 $'\020Slight' update to our downloads page '(#1515).' commit 716f191f1b196c8b8ce07f5276a6cfd4c12f139e Author: Alan Garny '' Date: Thu Jan 11 17:32:59 2018 +0100 Solver interface: added a 'reinitialize()' method '(#1515).' Makes things cleaner for CVODES when we need to reinitialise it '(when' solving a DAE 'model;' see 'SimulationWorker::started()).' commit 0cb02d698d78471cb388ed496a3bfe15e7f3b59a Author: Alan Garny '' Date: Thu Jan 11 17:11:56 2018 +0100 CellML support: 'don'\''t' keep track of the type of model '(#1515).' Indeed, if it is a DAE model, it will have some NLA equations to solve. commit cd6848509a9c9f7984071e8d1044f4cb5cd0ac9f Author: Alan Garny '' Date: Thu Jan 11 16:48:45 2018 +0100 CellML support: got rid of all the DAE-related code '(#1515).' commit 8b4beeee3e1bae22d6f25700cc3beaf0cade88f5 Author: Alan Garny '' Date: Thu Jan 11 16:25:59 2018 +0100 Solver interface: removed the DAE type of solver '(#1515).' commit e580447b160d11b10e382bfe421b76f1a7e724ce Author: Alan Garny '' Date: Thu Jan 11 15:50:27 2018 +0100 Solver interface: removed the VoiSolver and DaeSolver classes '(#1515).' The contents of the VoiSolver class was merged into the OdeSolver class. commit 71ba6c521a013f6174da491e479f2e4996f4e1f4 Author: Alan Garny '' Date: Thu Jan 11 15:30:42 2018 +0100 Documentation: slight updates related to DAE models '(#1515).' commit 486fa00847c0bce114aa931b551cfbb90518cc92 Author: Alan Garny '' Date: Thu Jan 11 15:10:14 2018 +0100 Documentation: updated our KINSOL solver page '(#1515).' commit ae162f0aad53197bed3a696ad205c814dfb42424 Author: Alan Garny '' Date: Thu Jan 11 15:08:23 2018 +0100 Updated the documentation to remove references to 'IDA(S)' '(#1515).' commit 59fbd43963fecc7ffd4d93d89c48c9be51edfc8f Author: Alan Garny '' Date: Thu Jan 11 14:51:08 2018 +0100 Some minor cleaning up. commit 499f88ea41bc6206e110a8ba27b789f352d24bd4 Author: Alan Garny '' Date: Thu Jan 11 14:47:34 2018 +0100 Removed the IDAS solver '(#1515).' commit b6c4d826780d3ec8a2f64f1bd6e7f5624a720b47 Merge: ddc54a04b 260048cf4 Author: Alan Garny '' Date: Thu Jan 11 14:14:40 2018 +0100 KINSOL solver: 'don'\''t' reset the solver on consecutive runs and improved its implementation '(closes' '#1512).' commit 260048cf4a6ae2f100dcc4cd2eb5c7c89c1c0909 Author: Alan Garny '' Date: Thu Jan 11 13:43:45 2018 +0100 Make sure that it compiles on Linux and macOS. commit 6671ae4613eb255f48827dd1cf80c1ca90fadd2c Author: Alan Garny '' Date: Thu Jan 11 13:39:51 2018 +0100 Make sure that it compiles on Windows. commit 647d9040b71418880f4d974e76607f0f2372e458 Author: Alan Garny '' Date: Thu Jan 11 13:00:53 2018 +0100 Slight update to our downloads page '(#1512).' commit 84f5e6817020f4cc0c17358792a4e400d2547a62 Author: Alan Garny '' Date: Thu Jan 11 11:52:35 2018 +0100 Slight update to our Smith et al. test COMBINE archive. Provide a more stable solution by asking CVODES not to interpolate its solution. commit 80b33939b4423f25db9dbe0f6e70aa9c6a33a46b Author: Alan Garny '' Date: Thu Jan 11 11:51:07 2018 +0100 Simulation support: make sure that our solver is reinitialised, if needed, before using it '(#1512).' commit 44292c1a5484c5144561483abf26e719666f658f Author: Alan Garny '' Date: Thu Jan 11 10:35:08 2018 +0100 Central widget: get the mode and view tabs to work fine again. This was due to our work on issue '#1481.' commit 8345a5c07bb3fc19aed87725abf9569268edfeb7 Author: Alan Garny '' Date: Thu Jan 11 10:33:52 2018 +0100 Some minor cleaning up. commit e8a50e163939f0145194c9a2839391478edf9859 Author: Alan Garny '' Date: Thu Jan 11 10:30:02 2018 +0100 Some minor cleaning up. commit e20ef25b4dec73e9c2faec1a5b3ac0f3f3c47d4a Author: Alan Garny '' Date: Wed Jan 10 15:28:28 2018 +0100 KINSOL solver: some refactoring to make things '(much)' faster '(#1512).' We had forgotten to update our user 'data!' commit 72da11bb0101eec069f18b74a1c1db65716042e0 Merge: 1cd0d906f ddc54a04b Author: Alan Garny '' Date: Wed Jan 10 11:04:28 2018 +0100 Merge branch ''\''master'\''' into issue1512. commit ddc54a04b91c1c72e0409fa1c2716c329ec37950 Merge: e4d5e549e a32795a94 Author: Alan Garny '' Date: Wed Jan 10 11:00:55 2018 +0100 Simulation Experiment view: $'don\342\200\231t' incorrectly mark a CellML file as modified '(closes' '#1513).' commit a32795a94a653ec394df2f9a6a9b9f0022f983c6 Author: Alan Garny '' Date: Wed Jan 10 10:26:04 2018 +0100 Slight update to our downloads page '(#1513).' commit 14840c6ca0753b82c995f8d842f94b962bd0bc08 Author: Alan Garny '' Date: Wed Jan 10 10:23:53 2018 +0100 Simulation Experiment view: $'don\342\200\231t' incorrectly mark a CellML file as modified '(#1513).' commit 1cd0d906faa0467ac5b4fef7896bf7a3a8fa6979 Author: Alan Garny '' Date: Tue Jan 9 19:15:10 2018 +0100 Some minor cleaning up. commit 517a2a4364364c6fc7e3b12165d34bb760830fda Author: Alan Garny '' Date: Tue Jan 9 17:20:20 2018 +0100 KINSOL solver: some refactoring to make things '(much)' faster '(#1512).' commit afd1c6cac5d41e02293fb6017811205f0de3b9f9 Author: Alan Garny '' Date: Tue Jan 9 16:17:04 2018 +0100 Some minor cleaning up. commit d3cfee74114a5f392efbaeca7c284b6dcf159e4a Author: Alan Garny '' Date: Tue Jan 9 10:45:39 2018 +0100 NLA solvers: 'don'\''t' have an 'initialize()' method anymore, only a 'solve()' one '(#1512).' commit 96e148259f4b9cbfb521b057535882e566ac7ad6 Author: Alan Garny '' Date: Mon Jan 8 18:51:23 2018 +0100 Some minor cleaning up. commit 1c7005e06283f23a109fa9129799d796a65ab221 Author: Alan Garny '' Date: Mon Jan 8 17:48:24 2018 +0100 KINSOL solver: 'don'\''t' reset things on consecutive runs '(#1512).' commit 326fed9015046e5f2d3c5946bdb5434469140367 Author: Alan Garny '' Date: Mon Jan 8 17:33:28 2018 +0100 Slight updates to some of our test COMBINE archives. In issue '#1510,' we made it possible to customise the KINSOL solver, but forgot to update some of our test COMBINE archives. commit e4d5e549e44ee3991c3623e2fa8a61b92a2fb390 Merge: 883c2c456 61bba930c Author: Alan Garny '' Date: Mon Jan 8 17:20:11 2018 +0100 KINSOL solver: can now be parameterised '(closes' '#1510).' commit 61bba930c32e2081bdbda07f6bb53a1e7119c662 Author: Alan Garny '' Date: Mon Jan 8 16:48:12 2018 +0100 KINSOL solver: added French translations '(#1510).' commit 3c03a9292ec8837f1c80b3dde2e08828b1a23f9c Author: Alan Garny '' Date: Mon Jan 8 16:35:13 2018 +0100 Slight updates to our downloads and what is new pages '(#1510).' commit 1329405594695224b0b394d9cddb9867f1952a15 Author: Alan Garny '' Date: Mon Jan 8 16:34:48 2018 +0100 Some minor cleaning up. commit df3f62a51b7703a2b22fb7e16022f79009b85dee Author: Alan Garny '' Date: Mon Jan 8 16:21:48 2018 +0100 Simulation Experiment view: can now specify different linear solvers for KINSOL '(#1510).' commit f145c4d8524139c0dfbcdd6e902536a5d99d1718 Author: Alan Garny '' Date: Mon Jan 8 15:58:34 2018 +0100 Some minor cleaning up. commit 82f4e4c7df5fb6b24e8c5b4c74072f9852226ede Author: Alan Garny '' Date: Mon Jan 8 15:54:30 2018 +0100 Simulation Experiment view: can now specify different linear solvers for KINSOL '(#1510).' commit 4d13fd458c5d4e8e0aa5693e06ef08114b49b317 Author: Alan Garny '' Date: Mon Jan 8 14:51:37 2018 +0100 Some minor cleaning up. commit 741de23dfb9d70fa3b895c3d60a5a8041ddc28f3 Author: Alan Garny '' Date: Mon Jan 8 14:51:07 2018 +0100 Some minor cleaning up. commit b2829598d01d9941d6aa4189c0327b859867c708 Author: Alan Garny '' Date: Mon Jan 8 14:18:48 2018 +0100 Simulation Experiment view: make sure that NLA solver properties are properly read from a SED-ML file / COMBINE archive '(#1510).' commit 39a0b47db83952e170df52c39184beda814a596b Author: Alan Garny '' Date: Mon Jan 8 10:50:51 2018 +0100 Simulation Experiment view: make sure that we properly export an NLA 'solver'\''s' properties to SED-ML '(#1510).' commit 74b8f4b2f979e133b0e1137f7e37e06a3114bf99 Author: Alan Garny '' Date: Sat Jan 6 20:57:54 2018 +0100 Some minor cleaning up. commit 05c6f29ceb19d0d09257a950420ca5bfad78a712 Author: Alan Garny '' Date: Sat Jan 6 20:19:22 2018 +0100 KINSOL solver: make sure that commit 6c1e5a4 can compile fine. commit 3c394b40c92bb30d3fadec2c09b9c62f8bd19168 Author: Alan Garny '' Date: Sat Jan 6 19:04:34 2018 +0100 Some minor cleaning up. commit 6c1e5a4d4bf11cedab68d5811cf4bab32f83ab1e Author: Alan Garny '' Date: Sat Jan 6 18:32:08 2018 +0100 KINSOL solver: added Q_OBJECT to our KinsolSolver class '(#1510).' commit 266a7e3018df140ba69b8725588031ce10277060 Merge: 7e17fd6f6 d28f27d26 Author: Alan Garny '' Date: Sat Jan 6 18:24:30 2018 +0100 Merge branch ''\''master'\''' into issue1510. commit d28f27d26358fc22fb60b411e9c0b01de822436c Merge: 13c9f5ec6 883c2c456 Author: Alan Garny '' Date: Sat Jan 6 18:23:44 2018 +0100 Merge remote-tracking branch ''\''opencor/master'\''.' commit 883c2c456e7989317586bc580fe035c41eca6075 Author: Alan Garny '' Date: Sat Jan 6 18:13:51 2018 +0100 Core plugin: fixed a small problem with 'checkFileNameOrUrl()' on Windows. commit 7e17fd6f658ee8e3e52de8e82def44a8ef8f7c5e Author: Alan Garny '' Date: Sat Jan 6 00:17:17 2018 +0100 CellML support: renamed one of our test CellML files. commit 4fa42b528cd3dd122fadd1c94d2f43103bbb5b92 Author: Alan Garny '' Date: Fri Jan 5 23:58:09 2018 +0100 Solvers: use double quotes rather than single quotes in property error messages. commit 13c9f5ec677e71aa58c4a7b41e26374345ae3074 Author: Alan Garny '' Date: Fri Jan 5 23:16:09 2018 +0100 KINSOL solver: added the '"Maximum' number of 'iterations"' property '(#1510).' commit 596c7a0394cb39eaa7117bf0613c5c4a398a4703 Author: Alan Garny '' Date: Fri Jan 5 23:08:27 2018 +0100 Simulation class: make sure that we only update a 'solver'\''' name when actually needed '(#1510).' Indeed, when it comes to our NLA solver, to update its name may result in our NLA solver being reset, which then causes problems when it comes to its properties '(none' can be found 'anymore).' commit 96fc4fa6541295f8e9c2f19dfb21e69c53fc8fc4 Author: Alan Garny '' Date: Fri Jan 5 20:04:39 2018 +0100 Some minor cleaning up. commit 51a8de2ab82e3ed4f560158dbd7a70ffc066022c Author: Alan Garny '' Date: Fri Jan 5 18:07:50 2018 +0100 Some minor cleaning up. commit 661c98b4ddd711374da835f71b7cd1b6555e097e Author: Alan Garny '' Date: Fri Jan 5 17:38:11 2018 +0100 KINSOL solver: settings things up for customisation '(#1510).' commit 1ce99e6f7373c29cd94ff643a2bd2c341e26a5df Merge: 503920fdd eddad2ff3 Author: Alan Garny '' Date: Fri Jan 5 16:48:28 2018 +0100 Improved support for DAE models '(closes' '#188' and closes '#536).' commit eddad2ff3cd081514952c10b4ad710e35e0643c9 Author: Alan Garny '' Date: Fri Jan 5 15:53:15 2018 +0100 Slight updates to downloads and what is new pages '(#188' and '#536).' commit d13158dd160d09b21cfd1aec8a0e9f828a68235e Author: Alan Garny '' Date: Fri Jan 5 15:34:24 2018 +0100 Prevent OpenCOR from crashing when a SED-ML file or COMBINE archive requires a solver that is not present. commit 6978e0f6260dafdefe93f75246c5fae6976a4b9f Author: Alan Garny '' Date: Fri Jan 5 15:01:53 2018 +0100 Slight update to our known limitations page '(#188' and '#536).' commit 498553d0f5f6a69b73d53ea711dbfff8126b5218 Author: Alan Garny '' Date: Fri Jan 5 14:44:50 2018 +0100 Simulation Experiment view: 'don'\''t' reset our NLA solver when further running a simulation '(#188' and '#536).' commit 5c5066f26ace98a373dfd39ddaa69e600cb28d86 Author: Alan Garny '' Date: Fri Jan 5 13:35:49 2018 +0100 Added a couple of COMBINE archives that can be used to test DAE models '(#188' and '#536).' commit c45a847980959c5a500b314afe31782076ca779e Author: Alan Garny '' Date: Fri Jan 5 12:58:40 2018 +0100 Simulation Experiment view: make sure that, from a SED-ML file, we can open a CellML file which path contains spaces. commit 6604b265d1d061d9f79dab9101ab7e645613ed9d Author: Alan Garny '' Date: Fri Jan 5 10:22:27 2018 +0100 Revert '"KINSOL' solver: make sure that all our values are finite '(#188' and '#536)."' This reverts commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5. commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5 Author: Alan Garny '' Date: Fri Jan 5 09:46:01 2018 +0100 KINSOL solver: make sure that all our values are finite '(#188' and '#536).' commit 809e6abcf549bdbbff0500871cab014a318c652e Author: Alan Garny '' Date: Fri Jan 5 08:40:21 2018 +0100 Reordered the properties of our KinsolSolverUserData class. commit e060ffcdd6dcb7f2a9d359b78092d3192b902f88 Author: Alan Garny '' Date: Thu Jan 4 17:42:56 2018 +0100 Some minor renaming. commit abbeed50f02619bd08f35ad73a82ce63373aea1c Author: Alan Garny '' Date: Thu Jan 4 16:27:33 2018 +0100 Some minor cleaning up. commit bfd10c4517fd29351234bf138d79bfc4ba41d2c2 Author: Alan Garny '' Date: Thu Jan 4 16:09:28 2018 +0100 Simulation support: slight improvements to our SimulationData class. commit 0a2272d6b18836da04c72c865216a8d3fb774068 Author: Alan Garny '' Date: Thu Jan 4 15:50:24 2018 +0100 Slight renaming of some test CellML files. Also removed a CellML file that is not relevant anymore '(since' $'it\342\200\231s' not actually an under constrained DAE 'model).' commit 432967b9383a1d7869cd92973d05f6945369a28d Author: Alan Garny '' Date: Thu Jan 4 15:09:37 2018 +0100 CellML support: slight improvement to our 'computeVariables()' method. commit e699699bfd1b96082490b8cdb7935b5470c8955b Author: Alan Garny '' Date: Thu Jan 4 15:06:18 2018 +0100 Some minor cleaning up. commit 327c14e524c585aeeec13995f19fca665a058294 Author: Alan Garny '' Date: Thu Jan 4 14:39:19 2018 +0100 DAE models: consider them as ODE models that have one or several NLA systems to be solved '(#188' and '#536).' commit 9d6e944e60f4f61ab1d682cc5e07e3743db7a103 Author: Alan Garny '' Date: Thu Jan 4 14:24:58 2018 +0100 Some minor cleaning up. commit d08db66e82f1262b4a6c1068a5384d3fe6cdf812 Author: Alan Garny '' Date: Wed Jan 3 16:21:38 2018 +0100 CellML support: make sure that our 'computeComputedConstants()' method can always be compiled. Indeed, we $'couldn\342\200\231t' compile '[OpenCOR]/doc/developer/functionalTests/res/cellml/parabola_variant_dae_' model.cellml anymore. Now, all our functional and model files that should be compilable are now so. commit fcacb8b8c342fd9c5cfbe485b8ce4ba53e2c9dad Author: Alan Garny '' Date: Wed Jan 3 14:35:09 2018 +0100 Some minor cleaning up. commit 8b87628a8b99b82b8ac4fe3f48d98f2e9f110a3c Author: Alan Garny '' Date: Wed Jan 3 13:35:16 2018 +0100 Solver interface: 'don'\''t' have our methods return an int anymore. Not quite sure why we ever did return an int in the first place. Probably to mimic what the CellML API. Yet, there is no actual need for it, not to mention that it results in code that is executed for nothing. commit f310edcef7a9d8e1666aad6d38692d111159b94e Author: Alan Garny '' Date: Wed Jan 3 10:57:50 2018 +0100 Some minor cleaning up. commit 503920fddad7d5f64c6ff45d54d436938d967665 Author: Alan Garny '' Date: Mon Jan 1 16:52:37 2018 +0100 Some minor cleaning up. commit 2020fc20df2119ad9ab8fdac70a175200c02032f Merge: e30a5d263 7b2d941ff Author: Alan Garny '' Date: Mon Jan 1 14:20:42 2018 +0100 SUNDIALS: upgraded to version 3.1.0 '(closes' '#1507).' commit 7b2d941ffd1f5714c6695090a9c40fbcbc7de2ee Author: Alan Garny '' Date: Mon Jan 1 13:32:51 2018 +0100 Slight updates to our downloads pages '(#1507).' commit 17d3f2142e2776bf5adeba9c50a32de6a9dd0f29 Author: Alan Garny '' Date: Mon Jan 1 13:32:08 2018 +0100 'Don'\''t' build our SUNDIALS package anymore '(#1507).' commit 94c2b85eed8e4b457e1e10d36f871ce602b9ef50 Author: Alan Garny '' Date: Mon Jan 1 13:31:10 2018 +0100 SUNDIALS: generated 3.1.0 binaries for Windows, Linux and macOS '(#1507).' commit fd144d90ac681996f561ffd7cb12f7056b81f995 Author: Alan Garny '' Date: Mon Jan 1 13:14:22 2018 +0100 SUNDIALS: upgrade to version 3.1.0 '(#1507).' commit 4057a1bec7269b960fff849b5c02590990da7c14 Author: Alan Garny '' Date: Mon Jan 1 13:01:26 2018 +0100 Build our SUNDIALS package '(#1507).' commit e30a5d263ffba05cc94027ace26a0e5bc120ae49 Merge: 8be6e7b68 481dc375e Author: Alan Garny '' Date: Fri Dec 29 11:04:23 2017 +0100 Some minor cleaning up. commit 481dc375e014097d2db780210fa3207c7a6613ce Author: Alan Garny '' Date: Fri Dec 29 10:11:10 2017 +0100 Some minor cleaning up. commit 8be6e7b68aef0fe18c09e46cc857166cfb08f139 Author: Alan Garny '' Date: Tue Dec 26 10:15:06 2017 +0100 Slight update to our third-party libraries page. commit 6b14cae4637033d816c4ddaca62181091aae98a3 Merge: 397127090 93b69f4e2 Author: Alan Garny '' Date: Sat Dec 23 22:14:09 2017 +0100 New snapshot. commit 93b69f4e2fef3661263050fc1db9c4746d967625 Author: Alan Garny '' Date: Sat Dec 23 21:19:52 2017 +0100 New snapshot. commit 397127090e0cfaec7cfd7dbfacc97ed1a2bf12af Merge: aea7428d8 5d954d4b6 Author: Alan Garny '' Date: Sat Dec 23 21:14:21 2017 +0100 Some cleaning up, fixes and improvements. commit 5d954d4b68ab665b9da77d4c6fb0df87c10b806a Author: Alan Garny '' Date: Sat Dec 23 20:37:41 2017 +0100 COMBINE archive: make sure that we can save / save as. commit f63e0ed763e1aed8df6dd211695d4d803e80032a Author: Alan Garny '' Date: Sat Dec 23 20:32:16 2017 +0100 COMBINE archive: make sure that we can update. commit 4c940057a811348caa63f10f4eb41d8df155f82c Author: Alan Garny '' Date: Sat Dec 23 20:27:32 2017 +0100 Some minor cleaning up. commit 7f7409e5857acf0168272c93e9c4c5f97936b192 Author: Alan Garny '' Date: Sat Dec 23 18:42:23 2017 +0100 COMBINE archive: allow for it to be updated. commit 3ac9cdebfcf7ce5eb9d138129daeec176552dc33 Author: Alan Garny '' Date: Sat Dec 23 18:39:27 2017 +0100 Some minor cleaning up. commit 9b77aff023d6f1f863d3246b1afc0f1e53ec8c49 Author: Alan Garny '' Date: Sat Dec 23 18:26:33 2017 +0100 COMBINE archive: 'don'\''t' consider ourselves as new once saved. commit e39098d7c7bca307be904b2f8747215fd6385d67 Author: Alan Garny '' Date: Sat Dec 23 17:07:22 2017 +0100 Some minor cleaning up. commit 358aab015db6110a3a11b694806605d5fad3befa Author: Alan Garny '' Date: Sat Dec 23 16:33:04 2017 +0100 Added some functional tests. commit e4a85033cd020dd94d28819a26a09809d279e998 Author: Alan Garny '' Date: Sat Dec 23 16:32:43 2017 +0100 Some minor cleaning up. commit 9e2a745d344d678ce8b57f20f194f85fee51ed4f Author: Alan Garny '' Date: Sat Dec 23 15:24:06 2017 +0100 Some minor cleaning up. commit 4150fd8ca048a4f0b201bef5d6c02cba715a3b5b Author: Alan Garny '' Date: Sat Dec 23 15:17:13 2017 +0100 Added some functional tests. commit 6307d63ad364486f66bf45ce1cce9e8bebda84fa Author: Alan Garny '' Date: Sat Dec 23 13:14:56 2017 +0100 CellML Annotation view: use 'CellmlFile::update()' to save a CellML file. Indeed since we are only updating an existing CellML $'file\342\200\246' and this prevent a crash when adding and then removing an annotation. commit aea7428d8977aefa53f63cd36d8c1969d091a5f3 Merge: 5d05a8317 dcebc9335 Author: Alan Garny '' Date: Sat Dec 23 11:31:18 2017 +0100 LLVM+Clang: upgraded to version 5.0.1 '(closes' '#1502).' commit dcebc93353386e7c75627442b5e6ede8f3c85381 Merge: fe4f5e876 5d05a8317 Author: Alan Garny '' Date: Sat Dec 23 10:52:13 2017 +0100 Merge branch ''\''master'\''' into issue1502. commit fe4f5e876601d9f64e87175371e2022ec7b82b51 Author: Alan Garny '' Date: Sat Dec 23 10:43:54 2017 +0100 $'Don\342\200\231t' build our LLVM+Clang package anymore '(#1502).' commit 5e7c87ae75d0c85a5df9d4079c6419c6e3bfede2 Author: Alan Garny '' Date: Sat Dec 23 10:42:12 2017 +0100 LLVM+Clang package: generated 5.0.1 binaries for Windows, Linux and macOS '(#1502).' commit 8b3d249daf761689e4a1fcbfd3cf8f2c10275b21 Author: Alan Garny '' Date: Fri Dec 22 22:54:33 2017 +0100 Slight update to our downloads page '(#1502).' commit 5d05a831787830d424abc61a9096a58911eb9e16 Author: Alan Garny '' Date: Fri Dec 22 22:37:21 2017 +0100 LLVM+Clang package: update our binaries on Windows, Linux and macOS. commit ce16f25e23f7c2aedf66c56b40ecb74588fabf9a Author: Alan Garny '' Date: Fri Dec 22 15:25:37 2017 +0100 LLVM+Clang: upgraded to version 5.0.1 '(#1502).' commit ffbfb02987644223e587919c052b7701cf2ddbca Author: Alan Garny '' Date: Fri Dec 22 11:19:38 2017 +0100 Getting ready to build our LLVM+Clang package '(#1502).' commit e2b282e7d8d168246770b42343427e2d8ee78934 Merge: 958243515 c1770c831 Author: Alan Garny '' Date: Thu Dec 21 20:19:39 2017 +0100 Simulation Experiment view: now allow the editing and saving of a SED-ML file / COMBINE archive '(closes' '#1366).' commit c1770c83111e0b9253f4683406b75523d9056eb3 Author: Alan Garny '' Date: Thu Dec 21 19:43:33 2017 +0100 Slight update to our downloads page '(#1366).' commit 7a528b84cff13f2dab025506776c7497cd0ca645 Author: Alan Garny '' Date: Thu Dec 21 19:38:32 2017 +0100 Some minor cleaning up. commit defa4a949d07fb019da0bed6d960b708e4b73d07 Author: Alan Garny '' Date: Thu Dec 21 19:07:53 2017 +0100 Simulation Experiment view: can now $'\342\200\234save\342\200\235' / $'\342\200\234save' $'as\342\200\246\342\200\235' a local COMBINE archive '(#1366).' commit 97636730f72dbfd5d732a77576b7beee3f84c13a Author: Alan Garny '' Date: Thu Dec 21 17:52:23 2017 +0100 Simulation Experiment view: some work on saving / saving as a local COMBINE archive '(#1366).' commit a56fd21cc6e9a18ac8b4265816746b1f4d05111d Author: Alan Garny '' Date: Thu Dec 21 16:58:28 2017 +0100 Simulation Experiment view: fixed a small problem with our creation of a SED-ML file. commit 537d1b3257253bf6e5c2521016e441ec71691cd0 Author: Alan Garny '' Date: Thu Dec 21 16:13:01 2017 +0100 Simulation Experiment view: fixed a small problem with our creation of a SED-ML file. commit dd2eada082c391173f3d92105e988041087cf5ec Author: Alan Garny '' Date: Thu Dec 21 15:54:31 2017 +0100 Some minor cleaning up. commit 3ebc0b1c04682232c83a01184fbd5217d6da7e50 Author: Alan Garny '' Date: Thu Dec 21 15:42:55 2017 +0100 Some minor cleaning up. commit 53b76e5f9b4a98eed9143941b54d9d65728a5075 Author: Alan Garny '' Date: Thu Dec 21 14:46:47 2017 +0100 Some minor cleaning up. commit 0266e3d335657c7ae19b82292a67a45d60dcbfdc Merge: 68af9d46c 958243515 Author: Alan Garny '' Date: Thu Dec 21 13:47:33 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 95824351569100dc36c08e2d384eb619bfa2ed0b Merge: 65a3e6233 bf12b637f Author: Alan Garny '' Date: Thu Dec 21 13:44:32 2017 +0100 libSBML: upgraded to version 5.16.0 '(closes' '#1494).' commit bf12b637f6552490c8d2ebbb132f032e709f47cb Author: Alan Garny '' Date: Thu Dec 21 13:09:05 2017 +0100 libSBML: updated our test '(#1494).' commit bb49d50571440b7b30d855704b4287b8f654811c Author: Alan Garny '' Date: Thu Dec 21 11:50:44 2017 +0100 Slight update to our downloads page '(#1494).' commit 1e13e3bbedb828c5cff0734af97d3c4e06af06dd Author: Alan Garny '' Date: Thu Dec 21 11:49:58 2017 +0100 'Don'\''t' build our libSBML package anymore '(#1494).' commit aa0d5aede129c4b8f88463aca0fe0c94a4e26f83 Author: Alan Garny '' Date: Thu Dec 21 11:49:28 2017 +0100 libSBML: generated new binaries for Windows, Linux and macOS '(#1494).' commit 6de913c3156cdd582513c24a667d9e32afb2c587 Author: Alan Garny '' Date: Thu Dec 21 11:16:10 2017 +0100 libSBML: upgraded to version 5.16.0 '(#1494).' commit 5c0cbe8b9738d0607e627e1ab52c1033f57b030b Author: Alan Garny '' Date: Thu Dec 21 10:57:58 2017 +0100 Slight update to our third-party libraries page '(#1494).' commit 6eef9b3a11f07757484c061b3138e588bf2a629a Author: Alan Garny '' Date: Thu Dec 21 10:57:31 2017 +0100 Getting ready to build our libSBML package '(#1494).' commit 65a3e62330ff32f8bda31c2afe1126c9305650ff Merge: 73be8cb86 107f7c66e Author: Alan Garny '' Date: Thu Dec 21 10:55:10 2017 +0100 Now pass 'make[test].bat' arguments to scripts/genericmake.bat '(closes' '#1498).' commit 107f7c66ee5733cc2dab24a9be41926d9e98014e Author: Alan Garny '' Date: Thu Dec 21 10:20:24 2017 +0100 Pass 'make[test].bat' arguments to scripts/genericmake.bat '(#1498).' Obviously the behaviour of '`shift`' is different on Windows and 'Linux/macOS…!' commit faae7419c44023a395799c3a3f879eb997f470fd Author: Alan Garny '' Date: Thu Dec 21 10:03:39 2017 +0100 Some minor cleaning up. commit fa2cc5a8e8b34075df8aeb55a0a437f0b42358d4 Author: Alan Garny '' Date: Thu Dec 21 09:49:29 2017 +0100 Slight update to our downloads page '(#1498).' commit 61d9823bf3f3d7932bdb8595e2d22ebd9c441b99 Author: Alan Garny '' Date: Thu Dec 21 09:48:28 2017 +0100 Slight update to our downloads page '(#1498).' commit 02af6c1908b3c3d030255c792bdd652a5913b9e4 Author: Alan Garny '' Date: Thu Dec 21 09:46:17 2017 +0100 Pass 'make[test].bat' arguments to scripts/genericmake.bat '(#1498).' commit 68af9d46cdbca7d397db6e0f9a89aa5a60f2feff Author: Alan Garny '' Date: Wed Dec 20 18:56:51 2017 +0100 Simulation Experiment view: can now export a local or remote SED-ML file to a COMBINE archive '(#1366).' commit 1108e5a4ff22e0b0510b43df6b512acd49fb1464 Author: Alan Garny '' Date: Wed Dec 20 18:10:45 2017 +0100 Some minor cleaning up. commit ead118201f47820cfd9f9345974d739667d69363 Author: Alan Garny '' Date: Wed Dec 20 18:07:54 2017 +0100 Some minor cleaning up. commit 1caa2e8b8504c8cfb1b09fac079c4f262548d18e Author: Alan Garny '' Date: Wed Dec 20 17:07:27 2017 +0100 Simulation Experiment view: improved the creation of a SED-ML file '(#1366).' Indeed, before, if we were to export a modified SED-ML file to a COMBINE archive '(i.e.' we would have a '‘*’' in the file tab 'text),' then the '‘*’' would temporarily disappear. commit 5d4cc4bc11e927bcfc89722f3982fcbc8623e3a3 Author: Alan Garny '' Date: Wed Dec 20 16:15:56 2017 +0100 Simulation Experiment view: can now save/save as a SED-ML file that references a local or remote CellML file '(#1366).' commit fc81274b8699103ab0f68ceaaeea58e3949f6c3d Merge: fc5f63d45 73be8cb86 Author: Alan Garny '' Date: Wed Dec 20 14:58:07 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 73be8cb869d7cfbc4bb88bee5e9434604c90901f Merge: f038353b9 6581aa18f Author: Alan Garny '' Date: Wed Dec 20 14:57:00 2017 +0100 Some minor cleaning up. commit 6581aa18f13f182a6c40b50d61f567fc4d34949d Author: Alan Garny '' Date: Wed Dec 20 14:16:04 2017 +0100 Some minor cleaning up. Forgot to clean that up when working on issue '#1491...!' commit fc5f63d45127181a38de09f573471d4db3cc3bd6 Merge: e5fbafe9d f038353b9 Author: Alan Garny '' Date: Wed Dec 20 13:21:40 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit f038353b92f905cc68479d9aa1575f1ca08cef67 Merge: 8d8b659c9 a8f314d1d Author: Alan Garny '' Date: Wed Dec 20 13:10:38 2017 +0100 General: reworked our approach to the saving/reloading of a file '(closes' '#1491).' commit a8f314d1d89816b623bf8552fc3e98764dbca8dc Author: Alan Garny '' Date: Wed Dec 20 12:40:04 2017 +0100 Slight update to our downloads page '(#1491).' commit 4cff8737496147c9e1bb7dc188cc3e3c5c1933f1 Author: Alan Garny '' Date: Wed Dec 20 11:51:16 2017 +0100 Central widget: finally prevented our GUI from flashing when switching views. commit 508599982cc819c066847a3ca167a1a1d6763f6e Author: Alan Garny '' Date: Wed Dec 20 11:37:19 2017 +0100 Central widget: finally prevented our GUI from flashing when switching views. commit 86978ff1fde75e161d329d260314ed7d20bfa0e9 Author: Alan Garny '' Date: Wed Dec 20 10:27:05 2017 +0100 Simulation Experiment view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 2cae60b35cac6d42698f22eb498704d3828e1db7 Author: Alan Garny '' Date: Wed Dec 20 09:40:40 2017 +0100 File classes: refactored a few things that were in our CellmlFile class but not in our SedmlFile or CombineArchiveFile classes. commit d5cfe3f2d4a0b9d5f04c445d1aee5ad0ed68248e Merge: 8966aeef8 8d8b659c9 Author: Alan Garny '' Date: Tue Dec 19 19:29:05 2017 +0100 Merge branch ''\''master'\''' into issue1491. commit e5fbafe9d0cf14b4e8a85d6cb5b40aff32217b00 Merge: 494e43de3 8d8b659c9 Author: Alan Garny '' Date: Tue Dec 19 19:28:40 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 8d8b659c99bc823f7a44a882faddaceb9cbc51f2 Author: Alan Garny '' Date: Tue Dec 19 19:28:00 2017 +0100 Slight update to our third-party libraries page. commit 8966aeef8f1a96c26823a83780e2e91313523e59 Author: Alan Garny '' Date: Tue Dec 19 19:19:52 2017 +0100 Some minor cleaning up. commit 878cc1936d0868900ed7cbf6837e9738600a5489 Author: Alan Garny '' Date: Tue Dec 19 19:18:58 2017 +0100 Simulation Experiment view plugin: some work on reworking our approach to the saving/reloading of a file '(#1491).' commit 53403ce65a84b4b04e81464ac230ad016a6adc6b Author: Alan Garny '' Date: Tue Dec 19 17:49:39 2017 +0100 Some minor cleaning up. commit af4e01bc3c1530ed15221ccc22b014b630eac8c4 Author: Alan Garny '' Date: Tue Dec 19 15:08:32 2017 +0100 Some minor cleaning up. commit 494e43de343f762121dba9313960ec7b8eefa3b4 Author: Alan Garny '' Date: Tue Dec 19 13:26:07 2017 +0100 Some minor cleaning up. commit 824c07778dfdcdbeffb5833c1ca7513e57d8577d Author: Alan Garny '' Date: Tue Dec 19 11:14:12 2017 +0100 Core plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 439ad2faf9946696ee0156c261635ebe8c947a96 Author: Alan Garny '' Date: Tue Dec 19 11:11:14 2017 +0100 SED-ML Editing view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 301ac4cdc2b18309c270dacfe7b61730d56a3a64 Author: Alan Garny '' Date: Tue Dec 19 10:30:34 2017 +0100 Central widget: get the mode and view tabs to work fine again. This was due to our work on issue '#1481.' commit 02352d4eacb3c4926892400b1bf382d10f18efba Author: Alan Garny '' Date: Mon Dec 18 19:23:22 2017 +0100 Central widget: we need our central widget to be enabled before we can give the focus to the new view. commit fe1e2b9e9400890e2df10dc6809a556ecce056e4 Author: Alan Garny '' Date: Mon Dec 18 18:31:02 2017 +0100 Editing view plugin: simplified things a bit '(#1491).' commit cdae6d7a42d848f8c3482b56b0567699c9c09ba2 Author: Alan Garny '' Date: Mon Dec 18 18:09:05 2017 +0100 Raw SED-ML view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 5021bcc8aa2fb7441897cdd6de6a380735214f79 Author: Alan Garny '' Date: Mon Dec 18 18:00:00 2017 +0100 CellML Annotation view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit ee513c6f059e0d025ecd2e2d8a4f4202b2cca79b Author: Alan Garny '' Date: Mon Dec 18 17:57:59 2017 +0100 CellML Annotation view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 6ab8a178d40d391868a4b2fe2d69a55b2eef6700 Author: Alan Garny '' Date: Mon Dec 18 17:51:15 2017 +0100 CellML Annotation view: slight improvement to the saving of a CellML file to which we have removed some annotations. commit 4aa9a298289b184ed6d4a3384bc4a5264b8cce59 Author: Alan Garny '' Date: Mon Dec 18 17:20:43 2017 +0100 CellML Annotation view: fixed a small problem with the hiding of our busy widget. This is an indirect result of our work on issue '#1492.' commit 5c41a601280b9658f76607328fb4035c557e5cb8 Author: Alan Garny '' Date: Mon Dec 18 17:05:49 2017 +0100 Raw Text view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit a5fed460444cfd3b72b3570661b7433afa24c8f4 Author: Alan Garny '' Date: Mon Dec 18 17:01:25 2017 +0100 Raw CellML view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 5b89970ee77230ce78681d9ee88f9cacbd818009 Author: Alan Garny '' Date: Mon Dec 18 15:55:46 2017 +0100 CellML Editing view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit b9b1787b772d4ce02d33c5d823f050f572e8c8e6 Author: Alan Garny '' Date: Mon Dec 18 15:54:40 2017 +0100 Revert '"CellML' Editing view plugin: reworked our approach to the saving/reloading of a file '(#1491)."' This reverts commit c6659bb9b6471e55fa4171877e6491859be44ff4. commit c6659bb9b6471e55fa4171877e6491859be44ff4 Author: Alan Garny '' Date: Mon Dec 18 15:44:23 2017 +0100 CellML Editing view plugin: reworked our approach to the saving/reloading of a file '(#1491).' commit 1e1b76b1686d2fcf1dba1724d9f228a0216a6a23 Author: Alan Garny '' Date: Mon Dec 18 15:39:16 2017 +0100 Editing view plugin: simplified things a bit '(#1491).' commit ca2e8c27d4f9e5a6f382094508f86ea2ce1df1db Author: Alan Garny '' Date: Mon Dec 18 10:45:56 2017 +0100 Editing and CellML Editing view plugins: 'don'\''t' handle the '`fileSaved()`' interface '(#1491).' commit da714d2d23ff7cb20774e2234563df37b12ac5b3 Author: Alan Garny '' Date: Mon Dec 18 10:32:43 2017 +0100 Central widget: prevent some flashing. Some flashing was indeed occurring when in CellML Text view and modifying a file from outside of OpenCOR. When going back to OpenCOR, we were asked to reload the file. Then, to reload the file resulted in a commit f7c7d684ee7ad657d636079dd0a40735bfc43bd9 Author: Alan Garny '' Date: Mon Dec 18 09:47:32 2017 +0100 Slight update to our sample view documentation page '(#1491).' commit 8804ccf467a1b2a16d460d8c39f1e3489be64880 Merge: 720c195a1 4a418f39b Author: Alan Garny '' Date: Fri Dec 15 20:43:17 2017 +0100 Merge branch ''\''master'\''' into issue1491. commit 53f60d79c0feb6e1509012a20c07ac2cb34949e7 Merge: 3c28a654e 4a418f39b Author: Alan Garny '' Date: Fri Dec 15 20:42:04 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 4a418f39bbde7cda2fc008cec203c1af954863b2 Merge: 6f3219366 1ed912752 Author: Alan Garny '' Date: Fri Dec 15 20:35:34 2017 +0100 Simulation Experiment view: made the '(re)loading' of remote files and SED-ML files / COMBINE archives much smoother '(closes' '#1492).' commit 1ed912752c150799cff80ac5377cb58c571514fb Author: Alan Garny '' Date: Fri Dec 15 20:04:17 2017 +0100 Slight update to our downloads page '(#1492).' commit 45cc5888fee377c4b798ebdf5ae0ab1288bbc5f2 Author: Alan Garny '' Date: Fri Dec 15 20:02:06 2017 +0100 Tool bar widget: prevent people from specifying a parent. This is crazy, but $'that\342\200\231s' the only way to get things to work properly on 'macOS!?' '(See' 'code.)' commit 088d52905949163f9dfaa6b034b81c5dc12fb3e2 Author: Alan Garny '' Date: Fri Dec 15 18:11:25 2017 +0100 Graph panel widget: make sure that the removal of graph panels 'doesn'\''t' result in some flashes. commit 72864fb58035982034b47a3a32499410b1ad4ff1 Author: Alan Garny '' Date: Fri Dec 15 17:29:31 2017 +0100 Some minor cleaning up. commit a25a429d6b952ab9fccf640cd418f49b182e0f82 Author: Alan Garny '' Date: Fri Dec 15 17:16:45 2017 +0100 Simulation Experiment view: made the '(re)loading' of remote files and SED-ML files / COMBINE archives much smoother '(#1492).' Now, the only remaining issue is when OpenCOR starts with a file that is to be shown using the Simulation Experiment view. On macOS, the tool bar has a 3D look while it should have a flat one. $'It\342\200\231s' only that view for the first file. Indeed, if we switch to another file using the same view, then $'everything\342\200\231s' 'fine…!?' commit b2d165c63b8fa558c2fb5dbf972143561aa3a719 Author: Alan Garny '' Date: Fri Dec 15 16:31:18 2017 +0100 Some minor improvement. commit 9f115b8ec86036b57f8e3e0aacb4e3817a1f194e Author: Alan Garny '' Date: Fri Dec 15 15:47:32 2017 +0100 Some minor cleaning up. commit 3b7d9788026866004627993404f1bc0988fe326e Author: Alan Garny '' Date: Fri Dec 15 10:48:39 2017 +0100 Simulation Experiment view: only process events here and there if we or our central widget is not showing our / its busy widget '(#1492).' This addresses the issue with our $'\342\200\230famous\342\200\231' black areas being temporarily shown when reloading a SED-ML file / COMBINE archive. commit 5fbc302551131f4bc319692573bd73a2024290f9 Author: Alan Garny '' Date: Fri Dec 15 10:36:45 2017 +0100 Simulation Experiment view: use some default sizes for graph panels if none are provided in a SED-ML file. commit 9b319e30d14c3218608735fed9ff077fc1cdac25 Author: Alan Garny '' Date: Fri Dec 15 10:35:59 2017 +0100 Graph panel widget: make sure that our graph panels are always visible. commit 720c195a14e2a1110b6417f92f8fdb1e2281da65 Merge: aa198dd2a 6f3219366 Author: Alan Garny '' Date: Thu Dec 14 18:05:58 2017 +0100 Merge branch ''\''master'\''' into issue1491. commit 3c28a654e47a971d9e00414af0b84db564294464 Merge: d83abbd2f 6f3219366 Author: Alan Garny '' Date: Thu Dec 14 18:03:26 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 6f3219366d89822b718bc75834945f37600364aa Merge: 6197f0b89 8c9b9380c Author: Alan Garny '' Date: Thu Dec 14 17:59:52 2017 +0100 Cleaning up and improvements. commit 8c9b9380c90959593d619d380beb02951a52c7b6 Author: Alan Garny '' Date: Thu Dec 14 17:23:24 2017 +0100 Some minor cleaning up. commit 02af0f9de389fe039aaddf7787f2264b642d5053 Author: Alan Garny '' Date: Thu Dec 14 17:22:53 2017 +0100 Whenever possible, use a QByteArray rather than a QString when reading/writing a file. commit 0ff862a44ffd59bd28f6050442aca39799812396 Author: Alan Garny '' Date: Thu Dec 14 16:57:55 2017 +0100 Some minor cleaning up. commit 9d2e9030b356c0e534ea2c15f7c8c43b1d06902d Author: Alan Garny '' Date: Thu Dec 14 14:39:16 2017 +0100 Some minor cleaning up. commit d83abbd2f2a00056aada09ef120f7d354484f7e9 Author: Alan Garny '' Date: Thu Dec 14 13:46:51 2017 +0100 Some minor cleaning up. commit ec71d8e693a3f7929da529c25b10d69b95173176 Author: Alan Garny '' Date: Thu Dec 14 13:42:07 2017 +0100 Some minor cleaning up. commit cd84448592b9f91aaa481773bd1019b538eccdaf Author: Alan Garny '' Date: Thu Dec 14 13:26:12 2017 +0100 Some minor cleaning up. commit 876cf78b3a7cf406f6a0e47ea84ecc5778df2d79 Author: Alan Garny '' Date: Thu Dec 14 13:03:44 2017 +0100 Graph panels widget: make it possible to remove all the graph panels. Right now, when removing all graph panels, we remove all of them but the first one. Yet, there may be cases where we would also want to remove the first one '(and' have it replaced with a $'\342\200\230blank\342\200\231' graph panel since we must always have at least one graph 'panel).' commit 164642c836369a4fb55b3d5180a959695acd3cf5 Author: Alan Garny '' Date: Thu Dec 14 12:57:45 2017 +0100 Graph panels widget: make sure that its sizes are properly set and tracked. commit 37e09c15aa0c95e8492720280324b59a490adc80 Author: Alan Garny '' Date: Thu Dec 14 12:49:14 2017 +0100 Some minor cleaning up. commit 344f02affff12fd12a9e02e0c36a108c14481c65 Author: Alan Garny '' Date: Thu Dec 14 11:42:51 2017 +0100 Slight update to our Sample view documentation. commit f0bb559d4f2162677df891337fd48ac9a842945a Merge: 1d7094864 e9fc41978 Author: Alan Garny '' Date: Thu Dec 14 11:42:07 2017 +0100 Merge branch ''\''issue1366'\''' of https://github.com/agarny/opencor into issue1366 commit 1d7094864dba617ffef0acc3f9a4dc5713296ff3 Author: Alan Garny '' Date: Thu Dec 14 11:41:33 2017 +0100 Some minor cleaning up. commit b1e06b63c16197b87816ff0792c46d454445bed4 Author: Alan Garny '' Date: Thu Dec 14 11:39:37 2017 +0100 Functional tests: make sure that our SED-ML files and COMBINE archive list things in the right order. commit 6ae77dfdbe153ba8005fccf4fef9ec8a611603c5 Author: Alan Garny '' Date: Thu Dec 14 11:34:23 2017 +0100 View interface: 'don'\''t' distinguish between the MIME types for opening and saving a file. Indeed, views that can open a given type of file should also be able to save that type of file. commit aa7311698546aba4b7abd7dd172b281bdafe861b Author: Alan Garny '' Date: Thu Dec 14 11:08:06 2017 +0100 Some minor cleaning up. commit 652bce19131348b732b84701291666c90120678e Author: Alan Garny '' Date: Thu Dec 14 11:03:35 2017 +0100 Some minor cleaning up. commit ecf33cde29a40b18937f2a1683be7dd9e6779aea Author: Alan Garny '' Date: Thu Dec 14 10:55:24 2017 +0100 Some minor cleaning up. commit 0f62b7d29af75ff091769ca60041f5e6d033f832 Author: Alan Garny '' Date: Thu Dec 14 10:49:42 2017 +0100 Some minor cleaning up. commit 3cafd523d32a13ad3b31ae93cf89bab0cafb4762 Author: Alan Garny '' Date: Thu Dec 14 10:48:20 2017 +0100 Some minor cleaning up. commit 72fa5d47f95dd47ea3ff12a6d320c5cdc0bd4278 Author: Alan Garny '' Date: Thu Dec 14 10:38:14 2017 +0100 Simulation Experiment view: when a file has been modified, only enable our reset button if it was a CellML file. commit c64541201d7a73e35fd511d3cdd5aac1ed779ec4 Author: Alan Garny '' Date: Thu Dec 14 10:35:55 2017 +0100 Simulation Experiment view: make sure that the 2D plots are always exported to SED-ML in the same order. commit 05d19d3c57631bee8513b673da882f1aa83a4e86 Author: Alan Garny '' Date: Thu Dec 14 10:32:58 2017 +0100 Some minor cleaning up. commit 48045676214f80e80d5852506d610c127fa07b81 Author: Alan Garny '' Date: Thu Dec 14 10:27:26 2017 +0100 Simulation Experiment view: 'don'\''t' ''\''manually'\''' track our file name. Indeed, this is bug prone '(e.g.' we forget to update it at some 'point).' commit 095f4e9e31ddcabb5b05f9145a2ddf534f72b6e6 Author: Alan Garny '' Date: Thu Dec 14 10:03:36 2017 +0100 Some minor cleaning up. commit 2d402af3f322b37db6cc0580ed2852fbd35de045 Author: Alan Garny '' Date: Thu Dec 14 10:03:18 2017 +0100 Some minor cleaning up. commit 73206f1bcba17e78672013cbc1c1a72ba0f42f38 Author: Alan Garny '' Date: Thu Dec 14 09:56:12 2017 +0100 Simulation support: added a way to return the file name associated with a simulation. commit f17d9ac03a2efe649fe8b935a5daa07ae2f06fac Author: Alan Garny '' Date: Thu Dec 14 09:55:40 2017 +0100 Some minor cleaning up. commit 34265ac4cc5b931270f9758a5d8ac3cac0bd129e Author: Alan Garny '' Date: Thu Dec 14 09:55:23 2017 +0100 Some minor cleaning up. commit 5bd1ae079bc4d9450e19b7940fe5d875600dedc8 Author: Alan Garny '' Date: Thu Dec 14 09:18:59 2017 +0100 Some minor cleaning up. commit aa198dd2a60eaf2b1a4577d634a091d2ac932050 Author: Alan Garny '' Date: Wed Dec 13 18:48:53 2017 +0100 Some minor cleaning up. commit c8e90ff84b577aabd7c7c6f8987d7001c301d596 Author: Alan Garny '' Date: Wed Dec 13 17:29:08 2017 +0100 Sample view: 'don'\''t' do anything when a file has been saved '(#1491).' commit 450630dc24ab28894bdc16f64506e3a509171a73 Author: Alan Garny '' Date: Wed Dec 13 16:47:08 2017 +0100 General: added the 'fileSaved()' method interface '(#1491).' commit cd7ee9ba56d569d78f849fdb376e477976c0fa80 Author: Alan Garny '' Date: Wed Dec 13 16:19:14 2017 +0100 General: simplified our 'fileReloaded()' method interface '(#1491).' commit e9fc41978e06631f77d7b8fced9535a0d3cff9f0 Author: Alan Garny '' Date: Wed Dec 13 11:54:02 2017 +0100 Some minor cleaning up. commit 95dc1dc22179706672713352d3d9c676696d9512 Author: Alan Garny '' Date: Wed Dec 13 10:40:43 2017 +0100 Some minor cleaning up. commit 9b6b6c0bc8c28839ff72f5efa699e2eb1214d91f Author: Alan Garny '' Date: Tue Dec 12 19:23:49 2017 +0100 Simulation Experiment view: make sure that the reloading of a SED-ML file results in all the graph panels being visible '(#1366).' commit bbb4a374f25d8457d190530dede699a84eb97d84 Author: Alan Garny '' Date: Tue Dec 12 19:03:18 2017 +0100 Some minor cleaning up. commit 4991d8d9cd0a87b2339c949aab081fc2886e46ad Author: Alan Garny '' Date: Tue Dec 12 18:33:57 2017 +0100 Some minor cleaning up. commit c8b19e1956aabcce98191133abc4eaa48e6c1dae Merge: d7cb6e795 6197f0b89 Author: Alan Garny '' Date: Tue Dec 12 17:45:00 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 6197f0b89acd9248333cc8e1b9b2d822a1a215f8 Merge: 0761532fb 7a3fb904f Author: Alan Garny '' Date: Tue Dec 12 17:44:06 2017 +0100 CellML API: fixed a small problem that made OpenCOR crash if a metadata id contained '`:`' '(closes' '#1487).' commit 7a3fb904f6c9fb19e5fd5fc5a55716a48a733474 Author: Alan Garny '' Date: Tue Dec 12 17:10:51 2017 +0100 Slight update to our downloads page '(#1487).' commit 7a3b10f8d462f2deab6c744d9233fc59c19ffcec Author: Alan Garny '' Date: Tue Dec 12 17:05:55 2017 +0100 'Don'\''t' build the CellML API anymore '(#1487).' commit 71de39cb07fdef2a46ae1e2ac2320c2f99be1b26 Author: Alan Garny '' Date: Tue Dec 12 17:05:29 2017 +0100 CellML API packages: updated our Windows, Linux and macOS binaries '(#1487).' commit e669ce1dc5335683fe2fe88b2afe2e947ff65caf Author: Alan Garny '' Date: Tue Dec 12 16:58:38 2017 +0100 CellML API package: ignore some warnings on Windows '(#1487).' commit 6d0ce5a9ec496e5d975266251597911793c74bc8 Author: Alan Garny '' Date: Tue Dec 12 16:58:08 2017 +0100 CellML API package: added a simple README.rst file '(#1487).' commit 2293e6e45573e68f707129438fd529a06eb6dd82 Author: Alan Garny '' Date: Tue Dec 12 16:29:55 2017 +0100 Get ready to build the CellML API '(#1487).' commit d7cb6e795663f3f2e01f15551ce0b3206369c9cd Merge: 01044bf56 0761532fb Author: Alan Garny '' Date: Tue Dec 12 13:56:24 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 0761532fbf1a76e0619c52c9d94a1d154fff1f57 Merge: a9bdbd41b 15b43e5ed Author: Alan Garny '' Date: Tue Dec 12 13:54:21 2017 +0100 Simulation Experiment view: to reload a CellML file when in development mode now actually reloads it '(closes' '#1488).' commit 15b43e5edad5a205cbf93b8fbf5833adf1d1c02e Author: Alan Garny '' Date: Tue Dec 12 13:13:25 2017 +0100 Slight update to our downloads page '(#1488).' commit 81f890652f876d2f5f2b186d463b72b5fef3eeb9 Author: Alan Garny '' Date: Tue Dec 12 13:11:23 2017 +0100 Simulation Experiment view: to reload a CellML file when in development mode now actually reloads it '(#1488).' commit 95b015e4c28dc7b8daf2a7046217e3aa1fbe2252 Author: Alan Garny '' Date: Tue Dec 12 11:22:16 2017 +0100 File handling interface: re-added pFileJustSaved to our 'fileReloaded()' method '(#1488).' commit 81b2cda902caf6cdae95f609ba8cdd68a8e7dda4 Author: Alan Garny '' Date: Tue Dec 12 11:21:03 2017 +0100 Slight improvement to our main CMakeLists.txt file. commit fc738f2f3491250d659ff896c2a1735e38c70664 Author: Alan Garny '' Date: Tue Dec 12 10:37:17 2017 +0100 Simulation Experiment view: some work on fixing an issue whereby reloading a CellML file when in development mode 'doesn'\''t' do anything '(#1488).' commit 01044bf5631aed48b28ebd3942873be867ba8187 Author: Alan Garny '' Date: Mon Dec 11 16:39:29 2017 +0100 Some minor cleaning up. commit b62bbd501d2aab115db389a419c6517bea59d6b5 Author: Alan Garny '' Date: Mon Dec 11 09:55:26 2017 +0100 Some minor cleaning up. commit 08a594f57d2ff24bf2e4ef198f134da5607dbf3a Author: Alan Garny '' Date: Fri Dec 8 18:06:06 2017 +0100 Simulation Experiment view: make sure that we can save a SED-ML file that references a remote CellML file '(#1366).' commit b743604c867c533bde9be3854b465b15b2923880 Author: Alan Garny '' Date: Fri Dec 8 17:47:52 2017 +0100 Graph panel widget: make sure that we provide the correct number of sizes. This came about as a result of opening https://models.physiomeproject.org/workspace/noble_1962/rawfile/c70f8962 407db00673f1fdcac9f35a2593781c17/noble_1962.sedml. That SED-ML file $'doesn\342\200\231t' use the $'\342\200\230height\342\200\231' property for a graph panel, so we ended up calling 'GraphPanelsWidget::setSizes()' with an empty list of sizes, which gave our graph panel widget the impression that we $'didn\342\200\231t' have any graph panel. This meant that adding a graph panel '(i.e.' call 'GraphPanelsWidget::addGraphPanel())' would result in 1 graph panel rather than 4. On the other hand, if were to remove a graph panel '(i.e.' call 'GraphPanelsWidget::removeGraphPanel()),' OpenCOR would just crash since it believed there were no graph panels. commit e8605216e8dae3b5241fdec7fa0811fa4cdbe4a1 Author: Alan Garny '' Date: Fri Dec 8 17:43:27 2017 +0100 Simulation Experiment view: prevent a remote SED-ML file / COMBINE archive from being modified '(#1366).' commit 3ad0ad4c49c51c9bd92caa98c1c28e999d86a446 Author: Alan Garny '' Date: Fri Dec 8 17:15:45 2017 +0100 Simulation Experiment view: make sure that our SED-ML data generators are always created in the same order '(#1366).' commit b56c85eec6ff78c5487f4c0d62f2442d8ea61250 Author: Alan Garny '' Date: Fri Dec 8 16:28:26 2017 +0100 Simulation Experiment view: only enable our reset button if a CellML file is considered modified '(#1366).' commit 98b751258db6ab18afe36274b952309c4a7eca41 Author: Alan Garny '' Date: Fri Dec 8 16:20:40 2017 +0100 Simulation Experiment view: can now save a modified SED-ML file '(#1366).' commit e7d8e29c542853151feedfcfbd365c779d0dd073 Author: Alan Garny '' Date: Fri Dec 8 16:19:23 2017 +0100 Some minor cleaning up. commit 8ccc5d77d85f0117748071a6cf8cc16ad176ba02 Author: Alan Garny '' Date: Fri Dec 8 13:54:01 2017 +0100 Slight update to our View interface now '(#1366).' The idea is so that we only get the relevant MIME type when saving a file, in cases where a view supports several MIME types. Indeed, the Simulation Experiment view can open CellML files, SED-ML files and COMBINE archives, but when one of the three types has been opened, we only want to be able to save under that type. commit 8d17899facecd6848e1c45a2be13a588bdb9e6b6 Author: Alan Garny '' Date: Fri Dec 8 13:37:39 2017 +0100 Some minor cleaning up. commit 2fd1bf1f87e2a9498e3ebc13c9b9ad884ebb4f35 Author: Alan Garny '' Date: Fri Dec 8 11:52:14 2017 +0100 Slight update to our View interface now '(#1366).' Indeed, the old View interface was because the Simulation Experiment view could open a CellML file, SED-ML file or COMBINE archive, but could only save a CellML file while we are going to be able to save all three types. commit 6c2735cba0e166dca31a4b8fa72b621e8b71cc0b Author: Alan Garny '' Date: Fri Dec 8 11:34:45 2017 +0100 General: save as such when saving a file under a new name. Until now, if we wanted to save a non-new and non-modified file under a new name '(using' the $'\342\200\234File\342\200\235' '|' $'\342\200\234Save' $'As\342\200\246\342\200\235' 'menu),' then we used to make a simple physical copy of the file. This was fine for a CellML file, but not always fine for a SED-ML '(while' still fine for a COMBINE 'archive)' since the relative path to its corresponding CellML file might now be different. So, instead, we should always save a file, whether not-new and/or not-modified. commit 02a906213060652294eead95221f7037da4963f9 Author: Alan Garny '' Date: Fri Dec 8 11:13:29 2017 +0100 Simulation Experiment view: make sure that all our internal properties get properly initialised upon reloading a file '(#1366).' commit 0f00fadb3fde08b3074b52d0196f25bf3383f4ae Author: Alan Garny '' Date: Fri Dec 8 11:12:50 2017 +0100 Simulation Experiment view: initialise some internal properties after painting ourselves as opposed to being shown for the first time '(#1366).' Indeed, to close a SED-ML file and have another getting active as a result was making that new SED-ML file $'modified\342\200\246' commit 0889aa5a522aa2a230ac9a667e54e38ddad6b579 Author: Alan Garny '' Date: Fri Dec 8 10:43:38 2017 +0100 Simulation Experiment view: reworked our 'SimulationExperimentViewSimulationWidget::save()' method '(#1366).' commit ca3dc14de9ee28607e638b351939ea08cad52ee6 Author: Alan Garny '' Date: Fri Dec 8 10:37:28 2017 +0100 Simulation Experiment view: reworked our 'SimulationExperimentViewSimulationWidget::save()' method '(#1366).' commit b9afa69c1f7ffd7e0217ab896cf36385cf5b62db Author: Alan Garny '' Date: Thu Dec 7 20:00:26 2017 +0100 Some minor cleaning up. commit 032b200230f3f9e6d03f97148b0f4b28050e8144 Author: Alan Garny '' Date: Thu Dec 7 19:44:56 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' Oops, forgot to have mGraphPanelPropertiesModified and mGraphsPropertiesModified properly initialised when our graph panels become visible. This meant that modifying, say, a simulation property value and change it back would result in the SED-ML file / COMBINE archive still being considered as modified. commit ea356e17c0d9a62f11fba7cd82b4d463cc20416b Author: Alan Garny '' Date: Thu Dec 7 19:32:53 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' Better handle the addition/removal of a graph panel. Now, also handle the addition/removal of graphs. commit effc1f66bcb3d6464e31cc73fb4306a5aa242d38 Author: Alan Garny '' Date: Thu Dec 7 19:16:50 2017 +0100 Some minor cleaning up. commit db7103cbf2cde1a18755d2512d9c9381f4156aa6 Author: Alan Garny '' Date: Thu Dec 7 19:13:55 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' Can now handle a change in the height of a graph panel. commit 58bfb3d0d97f8d534fa5e010d2cefe14132e0ad0 Author: Alan Garny '' Date: Thu Dec 7 18:07:06 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' To open, say, a SED-ML file then switch to another file and then back would result in the original SED-ML file to be considered modified while it clearly $'shouldn\342\200\231t' have been. $'That\342\200\231s' because mGraphPanelPropertiesModified and mGraphsPropertiesModified were not fully set, which is important since 'updateFileModifiedStatus()' now checks their $'keys\342\200\246' commit 8d872174b33a136d2af92d99c92330c1db9a9dae Author: Alan Garny '' Date: Thu Dec 7 17:43:26 2017 +0100 SimulationExperiment view: some work on determining when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' Can now handle the addition/removal of a graph panel. commit 5947d7b0dc08c96a55ca9c61690b0676bac00710 Merge: e1dba80d9 a9bdbd41b Author: Alan Garny '' Date: Thu Dec 7 17:20:00 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit a9bdbd41b3f9c8c61cd1412476e0739d656d9aa2 Merge: e72a64bb6 c34c09d92 Author: Alan Garny '' Date: Thu Dec 7 17:13:44 2017 +0100 OpenSSL: upgraded to version 1.0.2n '(closes' '#1483).' commit e1dba80d938921f15b2e31e011ab6532dc8f478b Author: Alan Garny '' Date: Thu Dec 7 17:13:20 2017 +0100 Graph panel widget: make it possible to remove the last graph panel. This is useful when we have customised a graph panel and want to start afresh. commit c34c09d92dfcdeeae4006b7c62b827cc6e4cef1e Author: Alan Garny '' Date: Thu Dec 7 16:33:05 2017 +0100 OpenSSL package: 'don'\''t' build our package anymore '(#1483).' commit e3df3c04cefe18f128c8580341c7e46b23d68cfc Author: Alan Garny '' Date: Thu Dec 7 16:31:33 2017 +0100 OpenSSL: upgraded to version 1.0.2n '(#1483).' commit ccb1535910a03d19add6be1ca94bd276501a4cbf Author: Alan Garny '' Date: Thu Dec 7 15:57:57 2017 +0100 Slight updates to our third-party libraries and downloads pages '(#1483).' commit 139b98b4dccb4dcc05567cc64e564927d88ff94a Author: Alan Garny '' Date: Thu Dec 7 15:56:37 2017 +0100 OpenSSL: upgraded to version 1.0.2n '(#1483).' commit 351fd5da750ceb83710a651f8518be6428cfe7d9 Author: Alan Garny '' Date: Thu Dec 7 15:43:41 2017 +0100 OpenSSL package: getting ready to build our package '(#1483).' commit 9cefd564b25a741c37053af7ec8bfa07cc44bf2d Author: Alan Garny '' Date: Wed Dec 6 18:23:42 2017 +0100 Graph panel widget: fixed a small problem with adding a graph panel to a SED-ML file / COMBINE archive. Indeed, say that we have 3 graph panels of different sizes and then add another graph panel. Then, all 4 graph panels used to have the same 'size…!?' commit c1e187393a4f157bc220621a8b66c070ed9b9af8 Author: Alan Garny '' Date: Wed Dec 6 18:11:06 2017 +0100 Some minor cleaning up. commit 8be43f1093cb56b97ad845bc6c5a68e5e9a04feb Author: Alan Garny '' Date: Wed Dec 6 16:21:56 2017 +0100 Simulation Experiment view: prevent some black areas from popping up when reloading our noble_1962_remote.sedml file. Basically, the black areas pop up when we resize our busy widget. So, $'don\342\200\231t' show our busy widget when reloading the current file. Not ideal, but still better than having those black areas popping $'up\342\200\246' commit 5926eeffb3c650876af123a81bdb17e13abe21ec Author: Alan Garny '' Date: Wed Dec 6 14:23:32 2017 +0100 Some minor cleaning up. commit 46d80217f2fb997fea77c873a6341eb8790087e1 Author: Alan Garny '' Date: Tue Dec 5 17:06:06 2017 +0100 SimulationExperiment view: can now determine when a SED-ML file / COMBINE archive has been modified '(and' modified 'back)' '(#1366).' commit 84915c4a6e70571552a292b61c7c24bf0dc63e8d Author: Alan Garny '' Date: Tue Dec 5 14:08:48 2017 +0100 Some minor cleaning up. commit 5c017a72f69a8962f17ee28cd745637c30e435dc Merge: d00e3c1ca e72a64bb6 Author: Alan Garny '' Date: Tue Dec 5 10:25:31 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit e72a64bb6919448ac07e3940ee61c11158921e7a Author: Alan Garny '' Date: Tue Dec 5 10:24:22 2017 +0100 Slight update to our prerequisites page '[ci' 'skip].' commit d00e3c1ca59f69776c74f017b33c709165fad173 Author: Alan Garny '' Date: Mon Dec 4 17:16:15 2017 +0100 General: slight improvement to the way we further initialise a SED-ML file / COMBINE archive. commit 21b715d8c4b86a870416117656470926e2cbed2a Author: Alan Garny '' Date: Mon Dec 4 15:46:21 2017 +0100 Simulation Experiment view: customised our SED-ML export drop-down button '(#1366).' commit 39d0c137bcd72eabd424a1ef683b2f10abaf6fb6 Author: Alan Garny '' Date: Mon Dec 4 15:11:08 2017 +0100 Some minor cleaning up. commit 83882d60beabe86b21906bb854727840832d8f51 Merge: 40054c68a 5ca1a92f7 Author: Alan Garny '' Date: Sat Dec 2 14:49:17 2017 +0100 Merge branch ''\''master'\''' into issue1366. commit 5ca1a92f7d3607ffd0527fdcb905d842b49c0ddc Merge: a3029c6ad 9b18d525a Author: Alan Garny '' Date: Sat Dec 2 14:46:00 2017 +0100 General: addressed a problem with quickly changing files potentially resulting in the wrong view being shown '(closes' '#1481).' commit 9b18d525a8cf45a522d141b861cafcae37f7ecec Author: Alan Garny '' Date: Sat Dec 2 14:12:43 2017 +0100 Slight update to our downloads page '(#1481).' commit 2243f001469fbc08a4e4cc8114e2aa004d9a90a2 Author: Alan Garny '' Date: Sat Dec 2 14:08:40 2017 +0100 General: slight improvement to the way we further initialise a SED-ML file / COMBINE archive. commit 5b60ea0d43b6998d439cae607ba3705a3f4446dd Author: Alan Garny '' Date: Sat Dec 2 13:42:45 2017 +0100 General: addressed a problem with quickly changing files potentially resulting in the wrong view being shown '(#1481).' commit 40054c68afb8f4901dcdfd71a7c9c33aa1828d2f Author: Alan Garny '' Date: Fri Dec 1 13:38:23 2017 +0100 Some minor cleaning up. commit 641b7351a8b302e49b11acc1944fabf9abaa99cb Author: Alan Garny '' Date: Fri Dec 1 13:33:28 2017 +0100 Some minor cleaning up. commit b7e5c4592073f7ab2c85822c4a23be7fb7a5d378 Author: Alan Garny '' Date: Fri Dec 1 13:30:48 2017 +0100 Some minor cleaning up. commit bc386c5132376546cbf85fa811805f5636a52dc4 Author: Alan Garny '' Date: Fri Dec 1 11:40:15 2017 +0100 Simulation Experiment view: nothing should prevent us from exporting a simulation to SED-ML even if no simulation has been run '(#1366).' commit a3029c6adbc7400d3fbc1144277d2a1ffb0155b0 Merge: 51cd480ee 3cc6810c6 Author: Alan Garny '' Date: Thu Nov 30 16:43:07 2017 +0100 Graph panel widget: now have the legend buttons use the same background as the plot area '(closes' '#1477).' commit 3cc6810c6cbc36f33087fe8ae391b5ab3996093e Author: Alan Garny '' Date: Thu Nov 30 16:08:30 2017 +0100 Travis CI: '(temporarily?)' disabling macOS builds. Indeed, there are currently nearly 600 jobs waiting in the macOS queue, $'so\342\200\246' $'it\342\200\231s' going to take a long time to clear. Yet, no incident is currently being reported on macOS, so it just looks like more and more people are trying to build on macOS and because Travis CI $'doesn\342\200\231t' have the same resources on macOS as on Linux, it takes much longer to build on that platform. Now, keeping all of that in mind, we happen to CI on Windows, Linux and macOS through Jenkins, so maybe $'it\342\200\231s' just fine to disable macOS builds on Travis 'CI…?' The caveat, though, is that for some reasons our Jenkins builds are only triggered when merging $'something\342\200\246' commit 30060a1e13e25c884138b54f09700540d6ec1b90 Author: Alan Garny '' Date: Thu Nov 30 15:54:46 2017 +0100 Slight update to our downloads page '(#1477).' commit 33ae70048e1000ebc6734ea4ed43f40fe8daef73 Author: Alan Garny '' Date: Thu Nov 30 15:51:55 2017 +0100 Functional tests: slight updates to our SED-ML files and COMBINE archive '(#1477).' commit 8cf0ccc2b4ed8a43d15f3c7f6d1169a43582ab2c Author: Alan Garny '' Date: Thu Nov 30 15:38:25 2017 +0100 Graph panel widget: added a foreground colour for a graph panel, which is used '(for' now at 'least)' the text of a legend '(#1477).' Indeed, say that you have a black background for the graph panel '(i.e.' plot 'area)' and keep the default '(i.e.' 'black)' foreground colour for the surrounding area, then the text of a legend will black on 'black!' commit 86e099efb8d0b1652c1776c003c506a264b32250 Merge: cfd6c6b55 51cd480ee Author: Alan Garny '' Date: Thu Nov 30 13:32:08 2017 +0100 Merge branch ''\''master'\''' into issue1477. commit cfd6c6b5510158d8da7c3e7d5b545f8f6c5a7c0c Author: Alan Garny '' Date: Thu Nov 30 13:31:14 2017 +0100 Graph panel widget: the legend buttons now use the same background as the plot area '(#1477).' commit 51cd480ee5f96e1a5ad0f2830e3133ef3f13b647 Merge: 641e1011a 4702f7165 Author: Alan Garny '' Date: Thu Nov 30 13:26:50 2017 +0100 Graph panel widget: the legend context menu now works again '(closes' '#1478).' commit a54eb7415f9ad1f77520de6eed0331f6336f976a Author: Alan Garny '' Date: Thu Nov 30 13:20:04 2017 +0100 Some minor cleaning up. commit f63b5e7005d376877a33fb6e5aea6c324ad227e0 Author: Alan Garny '' Date: Thu Nov 30 13:03:18 2017 +0100 Some minor cleaning up. commit 4702f7165744c28b8879b6e9a9a070dab058ff4f Author: Alan Garny '' Date: Thu Nov 30 10:34:57 2017 +0100 Slight updates to our downloads pages '(#1478).' commit 89bea874e30468885393b3e6d1978a9255171d2f Author: Alan Garny '' Date: Thu Nov 30 10:29:53 2017 +0100 Graph panel widget: the legend context menu now works again '(#1478).' commit 641e1011a2f3b901554566e693de85a0d347fd89 Merge: c42364a21 4601e90d4 Author: Alan Garny '' Date: Wed Nov 29 20:02:58 2017 +0100 New snapshot. Closes '#1475.' commit 4601e90d4bfa551c1bd8591af827e2b3980fc8ff Author: Alan Garny '' Date: Wed Nov 29 16:39:01 2017 +0100 New snapshot. commit b47c394cf32c9f30bfb9c9689468d858894dfe66 Author: Alan Garny '' Date: Wed Nov 29 16:38:06 2017 +0100 Slight update to a translation file. commit f662f655e0dcd94b28643b38c798877fc513363e Author: Alan Garny '' Date: Wed Nov 29 16:30:13 2017 +0100 Slight updates to our downloads and what is new pages '(#1475).' commit 2c29d832ebd51c924a0cd7a4699dd1858edcb273 Author: Alan Garny '' Date: Wed Nov 29 16:26:18 2017 +0100 Graph panel widget: prevent the plot canvas can from becoming black in some cases '(#1475).' commit c42364a210c023f5dcdaa949ab36f55ec9362a4b Merge: 2ef5bafc0 da34913fb Author: Alan Garny '' Date: Wed Nov 29 16:16:30 2017 +0100 Simulation Experiment view: can now distinguish between the background colour of the plot area and that of the surrounding area '(#1473).' commit da34913fba9de5e396f22baea4781d38bb649012 Author: Alan Garny '' Date: Wed Nov 29 15:09:42 2017 +0100 Slight updates to our downloads pages '(#1473).' commit 72cd1c0066e6c108df9f89aed8412a0559f56658 Author: Alan Garny '' Date: Wed Nov 29 15:08:52 2017 +0100 Slight updates to our downloads pages '(#1473).' commit 9405ae5fb5d675d0e174a554c23ca8b722f60f58 Author: Alan Garny '' Date: Wed Nov 29 15:08:28 2017 +0100 Some minor cleaning up. commit 835a1a6d15fa5ba4caea63e0b0be6709ecf7ad64 Author: Alan Garny '' Date: Wed Nov 29 14:15:36 2017 +0100 Some minor cleaning up '(#1473).' commit 8ad781642539fd7fd9226912f107a808e5852b30 Author: Alan Garny '' Date: Wed Nov 29 14:12:12 2017 +0100 Some minor cleaning up '(#1473).' commit f1ea23d93167d7b638cfdba833c029af6a1b75ee Author: Alan Garny '' Date: Wed Nov 29 13:55:44 2017 +0100 Some minor cleaning up '(#1473).' commit ec0f9fc540661478c7c056fed8457fffee96c7f0 Author: Alan Garny '' Date: Wed Nov 29 13:36:38 2017 +0100 Functional tests: updated our SED-ML files and COMBINE archive '(#1473).' commit a01b386d76c6def6ee22356188ad7527c09d1617 Author: Alan Garny '' Date: Wed Nov 29 13:33:09 2017 +0100 Some minor cleaning up. commit 4be0925c17c75bec8d8c8cbb4ea7a2aac3cf6838 Author: Alan Garny '' Date: Wed Nov 29 13:25:34 2017 +0100 GraphPanel widget: now distinguish between the background colour for the plot area and the surrounding area '(#1473).' commit 2ef5bafc02f8d7a7fd972d7dacc54b1c46afbb20 Merge: 99c49e213 83608a479 Author: Alan Garny '' Date: Tue Nov 28 18:25:37 2017 +0100 New snapshot. commit 83608a47961ae81730524c6c221323cffc62fea0 Author: Alan Garny '' Date: Tue Nov 28 18:20:58 2017 +0100 Functional tests: updated our SED-ML files. commit e5fc57d27e692e885e159f260f997e1b5fbf09b2 Author: Alan Garny '' Date: Tue Nov 28 18:09:29 2017 +0100 Functional tests: updated our local and remote SED-ML files. commit 8d5e3eb1c3dd7a968fb2c731f436ea2a4b4d6877 Author: Alan Garny '' Date: Tue Nov 28 18:06:23 2017 +0100 Some minor cleaning up. commit 5f3db6a8bcd828206f1815c6a134c97fdd0edc3f Author: Alan Garny '' Date: Tue Nov 28 18:01:56 2017 +0100 Some minor cleaning up. commit 2193d91fe86fa78af2d578f9bdf35c6b24b98f45 Author: Alan Garny '' Date: Tue Nov 28 17:25:57 2017 +0100 Functional tests: added a SED-ML file that demonstrates the customisation of graph panels and graphs. commit 99c49e2136c1f8598a6bc6213aefe90b17a793c3 Merge: b1aeac1fb 6c2139e73 Author: Alan Garny '' Date: Tue Nov 28 16:50:30 2017 +0100 New snapshot. commit 6c2139e73fc321d12d416072fe33e00f5993fe3f Author: Alan Garny '' Date: Tue Nov 28 15:58:44 2017 +0100 New snapshot. commit 90bc7d044cf5951bc1ae6a3bc0c1d1aefc41927d Author: Alan Garny '' Date: Tue Nov 28 15:57:40 2017 +0100 SimulationExperiment view: make sure the GUI is all fine before disabling updates. This prevents some further black flashes on macOS when reloading a SED-ML file that references a remote CellML file. commit 2db467f9b39a5c9b945bb18c639719024616db04 Author: Alan Garny '' Date: Tue Nov 28 15:41:54 2017 +0100 Make sure that a file is still being managed before checking it. commit 61b27b97eabd037ffa5261fe93c7afeedf24064d Author: Alan Garny '' Date: Tue Nov 28 15:41:09 2017 +0100 Revert '"New' 'snapshot."' This reverts commit 5cfbed2f34440852e550def2bb727b0143d9463d. commit b1aeac1fb69894f72502bc4221ea410734959eea Merge: 979e9aa5c 5cfbed2f3 Author: Alan Garny '' Date: Tue Nov 28 12:41:18 2017 +0100 New snapshot. commit 5cfbed2f34440852e550def2bb727b0143d9463d Author: Alan Garny '' Date: Tue Nov 28 11:30:59 2017 +0100 New snapshot. commit 979e9aa5cca3d9ddd7861051650672390c41a57e Merge: 9c1397bcf b98ba58c0 Author: Alan Garny '' Date: Tue Nov 28 11:27:27 2017 +0100 Some cleaning up. commit b98ba58c09c5383b92d5b64668d46cd1a4a8ff79 Author: Alan Garny '' Date: Tue Nov 28 10:52:33 2017 +0100 Slight update to our third-party libraries page. commit a24221c40e52ad9e2dc71b7bb8784ccc5efc6b4a Author: Alan Garny '' Date: Tue Nov 28 10:39:46 2017 +0100 Slight improvement to our 'urlArguments()' method. commit 9c1397bcfdc40fcaaefb312eb2d241521f6d1389 Merge: 971a611cc ec5905bfa Author: Alan Garny '' Date: Tue Nov 28 09:38:20 2017 +0100 Simulation Experiment view: can now show the legend of the different graphs shown in a graph panel '(closes' '#1171).' commit ec5905bfa7737d8622b6925c3663c07f33ca3104 Author: Alan Garny '' Date: Mon Nov 27 17:38:28 2017 +0100 Slight update to our downloads page '(#1171).' commit 254f7a6201b64293a26bf5c986983a4db79cf581 Author: Alan Garny '' Date: Mon Nov 27 16:49:49 2017 +0100 GraphPanel widget: account for the size of the font when aligning a graph panel with its neighbours '(#1171).' $'It\342\200\231s' working fine except if the legend is active: the graph panel will become physically wider if we increase the font size '(since' the legend gets 'wider)' while, if anything, its plot should become narrower, which is what actually happens if the simulation had been exported to a SED-ML file and that we were to edit the file to increase the font size '(as' opposed to doing it through the 'GUI).' commit c03763d308170770639a6de65359e49ddf82d1b4 Author: Alan Garny '' Date: Mon Nov 27 16:30:18 2017 +0100 Some minor cleaning up. commit d1ed38cff5e61bf4b7d98b3541494f554acba958 Author: Alan Garny '' Date: Mon Nov 27 15:45:50 2017 +0100 Some minor cleaning up. commit c8108fb64b70d0de0b0df7650e4bb1feed576978 Author: Alan Garny '' Date: Mon Nov 27 14:55:21 2017 +0100 Qt: addressed a regression issue '(?)' with 'QUrl::adjusted().' commit d5e8d2206b5d27f357ca5f7c78325f57c44ff440 Author: Alan Garny '' Date: Mon Nov 27 10:57:06 2017 +0100 Some minor cleaning up. commit b452fac15928b750fb6e1b75c0699aa3904afd4f Author: Alan Garny '' Date: Mon Nov 27 10:23:57 2017 +0100 GraphPanel widget: $'don\342\200\231t' force the alignment when not necessary '(#1426).' This had been modified in commit 9c3eec2b6fee47c1b93cf6d7d1a5a7a8a2668810 to ensure proper alignment when adding a graph panel when another had a Y title. However, this was unnecessarily realigning things and therefore slowing things down '(a' 'lot).' So, back to what we originally had. As for adding a graph panel when another has a Y title, it looks like our various changes '(as' part of issues '#1426' and '#1171)' indirectly addresses it since everything is still fine. commit c09fe3b723ecde7f00af2d33267070ab400f3f32 Merge: c299a3b2a 971a611cc Author: David Brooks '' Date: Sat Nov 25 16:10:15 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit baf6668005cffa421a5c7c90ddbcb9da041a03ee Author: Alan Garny '' Date: Fri Nov 24 19:21:40 2017 +0100 Some minor cleaning up. commit 41fae409423dd5a98b1e0d8bb53c2ff3eb1c4d72 Merge: c622c3d67 971a611cc Author: Alan Garny '' Date: Fri Nov 24 14:32:20 2017 +0100 Merge branch ''\''master'\''' into issue1171. commit 971a611cc4d9218df356afcb8b872a9651bc847c Merge: 78aea45cb 65bee0862 Author: Alan Garny '' Date: Fri Nov 24 14:31:40 2017 +0100 QScintilla: upgraded to version 2.10.2 '(closes' '#1466).' commit 65bee08623cfd1f967f4dea08ee28cbcef81f628 Author: Alan Garny '' Date: Fri Nov 24 13:49:41 2017 +0100 Slight update to our downloads page '(#1466).' commit cb129e911446f7c68e6cb2c389f0cc508de447bf Author: Alan Garny '' Date: Fri Nov 24 13:47:42 2017 +0100 'Don'\''t' build our QScintilla package anymore '(#1466).' commit 9ac12b50be42dce2be6f1701089b9ad9bb8f6d3b Author: Alan Garny '' Date: Fri Nov 24 13:47:16 2017 +0100 QScintilla package: updated our binaries '(#1466).' commit f3a831934ef81479b9dcc7c0ee38b409dc6dd7d0 Author: Alan Garny '' Date: Fri Nov 24 13:28:45 2017 +0100 Slight update to our QScintilla CMakeLists.txt file '(#1466).' commit dc499683b763aa8e93ab9ee7086ed7afab0cfe52 Author: Alan Garny '' Date: Fri Nov 24 13:14:05 2017 +0100 Slight update to our QScintilla CMakeLists.txt file '(#1466).' commit 9224337feec219915bf966d000fedae79c3d72e0 Author: Alan Garny '' Date: Fri Nov 24 13:13:10 2017 +0100 Getting ready to build our QScintilla package '(#1466).' commit cf688a76f273189dc1e83bc7c48459a3bb368f04 Author: Alan Garny '' Date: Fri Nov 24 13:11:48 2017 +0100 Slight update to our third-party libraries page '(#1466).' commit c622c3d676c6211a76671394748f1fa780104ab4 Author: Alan Garny '' Date: Fri Nov 24 11:39:16 2017 +0100 GraphPanel widget: properly handle the adding/removal of graphs when it comes to showing/hiding the legend of different graph panels '(#1171).' commit 6b450f0e545edb23e283acc8b02cb8181969d083 Author: Alan Garny '' Date: Fri Nov 24 10:21:58 2017 +0100 Some minor cleaning up. commit 0a5e7071ac23cce725436a1e663fefda8c570d5d Author: Alan Garny '' Date: Fri Nov 24 10:21:19 2017 +0100 Some minor cleaning up. commit e9049d0b70be908410db3c5d7c6cad9b3198494a Author: Alan Garny '' Date: Fri Nov 24 10:00:25 2017 +0100 Some minor cleaning up. commit 1a934ea769570e0b45def019b5f5aad01debc115 Author: Alan Garny '' Date: Fri Nov 24 09:50:35 2017 +0100 SimulationExperiment view: by default, we want the ''\''graphs'\''' panel to be active '(rather' than the ''\''graph' 'panels'\''' 'panel).' commit cdb185d72dd5cd135d066f4b853ab6155e6dccdd Author: Alan Garny '' Date: Fri Nov 24 09:43:37 2017 +0100 SimulationExperiment view: fixed a problem with the un/select all graphs context menu. It used to un/select the graphs of all graph panels, as opposed to those of the current graph panel. '(FWIW,' that problem has always been present, i.e. since OpenCOR 0.2 when we introduced several graph 'panels!)' commit c178774cb8e1affa7ca38a3870f643fe5bcf9dac Author: Alan Garny '' Date: Thu Nov 23 17:51:54 2017 +0100 Some minor cleaning up. commit 100df9287ec8cd52d8dd9b6a2e89ffc014a01cbf Author: Alan Garny '' Date: Thu Nov 23 17:49:54 2017 +0100 SimulationExperiment view: make the legend items clickable, so that we can show/hide a given graph '(#1171).' commit 741c78e36625b750e3f648a52f7e9a72e8e4a864 Author: Alan Garny '' Date: Thu Nov 23 15:27:09 2017 +0100 GraphPanel widget: now have a context menu for the X/Y log axes and the legend '(#1171).' commit 6386c2f23641c6317c151fbd8167cf01f21286a6 Author: Alan Garny '' Date: Thu Nov 23 14:26:46 2017 +0100 GraphPanel widget: some work on having a context menu for the X/Y log axes and the legend '(#1171).' commit 96135f00d70781e1cf28619e81d041bd1d06e1b7 Author: Alan Garny '' Date: Thu Nov 23 14:08:13 2017 +0100 Some minor cleaning up. commit 8f83eaa363ee0d37620188e6232873bfc6532343 Author: Alan Garny '' Date: Thu Nov 23 13:35:43 2017 +0100 Some minor cleaning up. commit dc90dbefbe57c320ad61485810735409de0a0471 Author: Alan Garny '' Date: Thu Nov 23 11:59:03 2017 +0100 GraphPanel widget: fixed a problem with 'Qwt'\''s' rendering of legends when exporting to PDF, etc. '(#1171).' commit 3956373a5f0af8d4286de32642181a8622ecd20a Merge: 777593f0d 78aea45cb Author: Alan Garny '' Date: Thu Nov 23 11:40:08 2017 +0100 Merge branch ''\''master'\''' into issue1171. commit 78aea45cb33cff17a6104b6ad3834070538a8544 Author: Alan Garny '' Date: Thu Nov 23 11:38:53 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 203078744e3c5658085b312e911a372986d0240d Author: Alan Garny '' Date: Thu Nov 23 11:38:26 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 777593f0d11db05d37084ffc5ec81967ab9aa911 Author: Alan Garny '' Date: Thu Nov 23 10:42:37 2017 +0100 GraphPanel widget: make sure that our legend is visible when enabled and after having added a graph '(#1171).' commit a6ae0afbd4d38704de55c80062f85209e05a16af Author: Alan Garny '' Date: Thu Nov 23 09:20:05 2017 +0100 Some minor cleaning up. commit c7ed1084de81a1113bb70362519e08d9a180abd7 Author: Alan Garny '' Date: Wed Nov 22 20:04:09 2017 +0100 GraphPanel widget: make sure that our legend is visible when enabled and after having added a graph '(#1171).' commit edc0568398100bd2440b15d6a04b33bc9078141e Author: Alan Garny '' Date: Wed Nov 22 19:56:54 2017 +0100 SimulationExperiment view: updated the alignment of our graph panels to account for the fact that they can have a legend '(#1171).' commit 60f6865fe0ef7728af5cea72d641b450a81e098a Author: Alan Garny '' Date: Wed Nov 22 19:55:13 2017 +0100 Some minor cleaning up. commit b207f3652e0e5c373af8ebe8c46413339cd79fe7 Merge: 4b8f8e6d9 412732275 Author: Alan Garny '' Date: Wed Nov 22 15:42:00 2017 +0100 Merge branch ''\''master'\''' into issue1171. commit 412732275e134ee668b04d551c90f21e8120a9e2 Author: Alan Garny '' Date: Wed Nov 22 15:41:20 2017 +0100 Some minor cleaning up. commit 4b8f8e6d9a54c2a1b95111532a065c09795a62cb Merge: b7db1a8fb 631258b59 Author: Alan Garny '' Date: Wed Nov 22 15:35:20 2017 +0100 Merge branch ''\''master'\''' into issue1171. commit 631258b59b3f4c675a902be581da15e3b42fee81 Merge: 60885f797 6a8a1f562 Author: Alan Garny '' Date: Wed Nov 22 15:33:29 2017 +0100 Qt: upgraded to Qt 5.9.3 LTS '(closes' '#1464).' commit 6a8a1f5628930e5259c022bfc6e33a7240d2fe4a Author: Alan Garny '' Date: Wed Nov 22 14:19:32 2017 +0100 Things to check when upgrading Qt. commit e1d487bd6f9703e17015c200a3de21e87db1069c Author: Alan Garny '' Date: Wed Nov 22 14:00:26 2017 +0100 General: upgraded to Qt 5.9.3 LTS '(#1464).' commit b7db1a8fbc950bcbe57f47a5b9fc26fd837b4f1e Author: Alan Garny '' Date: Wed Nov 22 10:09:43 2017 +0100 Some minor cleaning up. commit dfcb9b88d6b5b53d37453f199f13c3b53bdb258d Author: Alan Garny '' Date: Wed Nov 22 09:41:11 2017 +0100 Some minor cleaning up. commit 9f233d6766e47800f6420a1f62a75eacb54b7c54 Author: Alan Garny '' Date: Wed Nov 22 09:40:53 2017 +0100 SimulationExperiment view: make sure that all legends have the same width '(#1171).' commit 4b93bd015226097dc14e3284f61952785b00ec6d Author: Alan Garny '' Date: Tue Nov 21 18:28:52 2017 +0100 Some minor cleaning up. commit 1cd7d1b7cb49f6836f449115e65f086659fb7c0a Author: Alan Garny '' Date: Tue Nov 21 18:24:58 2017 +0100 Some minor cleaning up. commit ab62e5555683b4c12ec7431dfddebca7ad9729e8 Author: Alan Garny '' Date: Tue Nov 21 17:20:16 2017 +0100 SimulationExperiment view: now use the font size and foreground colour properties to customise our legend '(#1171).' commit a6493a78669aca0dae404a4a28d3ae03460b9ac5 Author: Alan Garny '' Date: Tue Nov 21 17:19:01 2017 +0100 Some minor cleaning up. commit 39109dc755c2cd7a651f120e997a26cc81e9cdc3 Author: Alan Garny '' Date: Tue Nov 21 15:30:43 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget '(#1171).' commit 8a5146584e5706714b980051fe5645e8c9303dc5 Author: Alan Garny '' Date: Tue Nov 21 15:24:43 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget '(#1171).' commit 3feb9eb19d157677edeb1c6aca83c136e69c0512 Author: Alan Garny '' Date: Tue Nov 21 11:11:09 2017 +0100 SimulationExperiment view: added the skeleton of our legend widget '(#1171).' commit c5c209d250bb95b69ea11e692ad3f6306789ef5d Author: Alan Garny '' Date: Tue Nov 21 10:51:27 2017 +0100 Some minor cleaning up. commit a0e0d3082b08364c03502e26f5fb66563b2f65e9 Author: Alan Garny '' Date: Tue Nov 21 10:44:31 2017 +0100 Some minor cleaning up. commit f69292b7b6a5fede136c3c750220987970c73861 Author: Alan Garny '' Date: Tue Nov 21 10:35:46 2017 +0100 SimulationExperiment view: added SED-ML support for our new graph title property '(#1171).' commit 2f75423fb38bef3b44a2d551364c8f876981aa94 Author: Alan Garny '' Date: Tue Nov 21 10:14:06 2017 +0100 Some minor cleaning up. commit 8b58b4ebece00114aecfa335f68986b33afbae47 Author: Alan Garny '' Date: Mon Nov 20 20:22:57 2017 +0100 SimulationExperiment view: added a Title property for our graphs '(#1171).' Now, we need to add SED-ML support for it. commit 90e8afc359ba90be95a09816603373cace005a92 Author: Alan Garny '' Date: Mon Nov 20 19:58:11 2017 +0100 PropertyEditor widget: make sure that the value of some of our properties is valid. commit 1b4815a093807bf078c0f69953d206a6822ddf2f Author: Alan Garny '' Date: Mon Nov 20 19:57:49 2017 +0100 SimulationExperiment view: select the first graph panel once everything has been fully initialised. commit 769725b03d5befafba2e18b4db457b712f05d862 Author: Alan Garny '' Date: Mon Nov 20 19:11:56 2017 +0100 PropertyEditor widget: make sure that the value of some of our properties is valid. commit ff82a7616b2f8704baa018bca6d49336825a8d73 Author: Alan Garny '' Date: Mon Nov 20 17:52:12 2017 +0100 Some minor cleaning up. commit c1569414bc0dc8711e2e8d4f18cf273f220c4da4 Author: Alan Garny '' Date: Mon Nov 20 17:45:19 2017 +0100 Some minor cleaning up. commit d0a513162a1fb3e3f2665897c6f23b677206d18b Author: Alan Garny '' Date: Mon Nov 20 16:48:23 2017 +0100 Property editor widget: 'don'\''t' show '"???"' In the tooltip of a string property when there is no value. commit 24e4773f425a5c25c6ad5745cd1eb8e3af3806c1 Author: Alan Garny '' Date: Mon Nov 20 14:53:25 2017 +0100 Some minor cleaning up. commit 0bda2d3cb56ea1f7eccf9e6dc5ee3bcf8b83debf Author: Alan Garny '' Date: Mon Nov 20 13:22:34 2017 +0100 Some minor cleaning up. commit f1769dcb7f1c22f2a4c41c6b035a9ea3e80f1cb0 Author: Alan Garny '' Date: Thu Nov 16 16:51:28 2017 +0100 Some minor cleaning up. commit a1280cc7a23e2afa10fcbf63595e73290f40a91f Author: Alan Garny '' Date: Thu Nov 16 13:50:19 2017 +0100 GraphPanel widget: some minor improvements on the way we set titles. commit c4b835006afe6a1ecbc84fa740fc5d98a75313fb Author: Alan Garny '' Date: Thu Nov 16 11:07:10 2017 +0100 Some minor cleaning up. commit fa94fca1920e0ca2318e8aa273e2404d2ce552c1 Author: Alan Garny '' Date: Thu Nov 16 10:46:47 2017 +0100 GraphPanel widget: make sure that the legend shows the line and symbols properties '(#1171).' commit 3008adadae45bdb45bf572f8df241021ade28ce3 Author: Alan Garny '' Date: Thu Nov 16 09:52:10 2017 +0100 GraphPanel widget: first go at showing the legend '(#1171).' commit 247f03bc7e172098b503a1d64a4dbc25fda52e00 Author: Alan Garny '' Date: Thu Nov 16 09:38:17 2017 +0100 GraphPanel widget: first go at showing the legend '(#1171).' commit f8985570a73e809fd238e52434a6c269e85dc9a7 Author: Alan Garny '' Date: Thu Nov 16 09:31:00 2017 +0100 SimulationExperiment view: added the ''\''legend'\''' property to the graph panel property editor and added SED-ML support for it '(#1171).' commit 6251e7e34bcb679031c2332752fd5843bafd055a Author: Alan Garny '' Date: Wed Nov 15 17:55:36 2017 +0100 Some minor cleaning up. commit 9255d39760ab89e5b66e924031f50b665af6d6f6 Author: Alan Garny '' Date: Wed Nov 15 16:35:46 2017 +0100 SimulationExperiment view: added the ''\''legend'\''' property to the graph panel property editor and added SED-ML support for it '(#1171).' Quite a bit of refactoring too. commit 32491bd6371587bb6b8664517494cb5246e42754 Author: Alan Garny '' Date: Wed Nov 15 15:56:27 2017 +0100 Some minor cleaning up. commit 60885f7971b174d83a35bdf61b79f2c761b50a80 Merge: 2020fe01a 095bb02a7 Author: Alan Garny '' Date: Wed Nov 15 15:19:28 2017 +0100 SED-ML support: now track the relative height of a graph panel '(closes' '#1461).' commit 095bb02a769ae46fcf9a6bd7a719e5d624d38ae5 Author: Alan Garny '' Date: Wed Nov 15 14:37:59 2017 +0100 Slight updates to our downloads and what is new pages '(#1461).' commit a7a0c1103dd0481e255ae642a2f9fa8a04441d4e Author: Alan Garny '' Date: Wed Nov 15 14:31:47 2017 +0100 SED-ML support: keep track of the relative height of a graph panel '(#1461).' commit b6a25e01d9a71f38319ec1d0e5185fde180aab88 Author: Alan Garny '' Date: Wed Nov 15 14:01:46 2017 +0100 Some minor cleaning up. commit 3eef78b063a308165a32c5f7778d06af5fa3c306 Author: Alan Garny '' Date: Wed Nov 15 13:54:15 2017 +0100 Some minor cleaning up. commit dbcfc92d49b85eea69927cf788e0b39d8c637b67 Author: Alan Garny '' Date: Wed Nov 15 13:50:34 2017 +0100 Some minor cleaning up. commit 2020fe01a7c502f1e998dcfddfc95f583f1aa128 Merge: 4075e8281 21ca3b3c6 Author: Alan Garny '' Date: Wed Nov 15 11:57:58 2017 +0100 Simulation Experiment view: can now customise a graph panel '(closes' '#1426).' commit 21ca3b3c60033c3f7409a8e926e607bcb3da1c30 Author: Alan Garny '' Date: Wed Nov 15 11:20:05 2017 +0100 Slight update to our downloads and what is new pages '(#1426).' commit 99b9d0bc0dff6580efa227a36793ab6a9104e636 Author: Alan Garny '' Date: Wed Nov 15 11:14:56 2017 +0100 SimulationExperiment view: now have SED-ML support for the zoom region settings '(#1426).' commit e2f48c48108fea7939d3e95b23f70e587b71a967 Author: Alan Garny '' Date: Wed Nov 15 10:52:58 2017 +0100 SimulationExperiment view: now have SED-ML support for the X axis and Y axis settings '(#1426).' commit 52a1a2c98398e40b01d114467662bec51f76fb76 Author: Alan Garny '' Date: Wed Nov 15 09:39:02 2017 +0100 SimulationExperiment view: now have SED-ML support for the point coordinates settings '(#1426).' commit 2c45770aaa6513a485bc098f398ddf5b16cd96e8 Author: Alan Garny '' Date: Wed Nov 15 09:17:13 2017 +0100 Some minor cleaning up. commit ab4da5af68cc6bb45131b1d46cb6a2c7b5cc1683 Author: Alan Garny '' Date: Wed Nov 15 08:45:47 2017 +0100 Some minor cleaning up. commit 55f6cc3f7fc224a7734348260bc95efce4aff139 Author: Alan Garny '' Date: Tue Nov 14 19:34:27 2017 +0100 SimulationExperiment view: now have SED-ML support for the grid lines settings '(#1426).' commit b11756cefbe31b4f5ef4ea03db3d16cf6011292b Author: Alan Garny '' Date: Tue Nov 14 19:17:51 2017 +0100 SimulationExperiment view: now have SED-ML support for the grid lines settings '(#1426).' commit 8321aaefe0876a3cb206aa4fa200c8f5112f426d Author: Alan Garny '' Date: Tue Nov 14 19:17:26 2017 +0100 SED-ML support: some minor refactoring and make sure that a line width is an integer '(and' not a 'double)' greater than zero '(#1426).' commit d788febc37abaa6aa3dd9539b643585462184113 Author: Alan Garny '' Date: Tue Nov 14 18:16:07 2017 +0100 SimulationExperiment view: make sure that our graph panels are properly reinitialised when reloading a SED-ML file '(#1426).' commit 8082effc794bcad38e9c65d2984f3b427b1d7b14 Author: Alan Garny '' Date: Tue Nov 14 17:55:42 2017 +0100 GraphPanel widget: improved our 'removeAllGraphPanels()' method '(#1426).' Indeed, until now, we were removing all the graph panels, but the first one. This was not only arbitrary, but if the graph panel had been customised '(e.g.,' a title had been 'set),' then it means that it would still be there. So, now, we add a graph panel '(since' we need at least one graph 'panel)' and then really remove all the other graph panels. commit 8c1643a5e96d96162dd0c096d8c4742ec6febbd1 Author: Alan Garny '' Date: Tue Nov 14 17:07:28 2017 +0100 GraphPanel widget: retrieve some memory when possible. commit a3430e8bb334a2403f6c61b36f783b7b023c18bd Author: Alan Garny '' Date: Tue Nov 14 16:31:49 2017 +0100 Some minor cleaning up. commit 62c9007facb5527544e1447e22ce3cc35f54d036 Author: Alan Garny '' Date: Tue Nov 14 15:24:06 2017 +0100 SimulationExperiment view: now have SED-ML support for the title '(#1426).' commit b6c96df1dbbf9c2d67e944e341ee8b4e6704e2fa Author: Alan Garny '' Date: Tue Nov 14 15:23:24 2017 +0100 Make sure that the GUI is up-to-date after executing a message box. commit 8c4a48420f512fb3d01d97ac48a34bf00c0fbbac Author: Alan Garny '' Date: Tue Nov 14 14:56:19 2017 +0100 SimulationExperiment view: now have SED-ML support for the font size '(#1426).' commit 2a4567d015c1644131366a0f156ac5a077b658c9 Author: Alan Garny '' Date: Tue Nov 14 14:26:52 2017 +0100 GraphPanel widget: improved our addition/removal of graph panels '(#1426).' commit 27de164f4fab655ac3d53444ce7de88e36e29140 Author: Alan Garny '' Date: Tue Nov 14 10:44:42 2017 +0100 Some minor cleaning up. commit efce4284ee250b34cffe6e52032be9464045d076 Author: Alan Garny '' Date: Mon Nov 13 18:43:46 2017 +0100 GraphPanel widget: make sure that our graph panels are properly aligned '(#1426).' Indeed, if we had one graph panel, added a title to its Y axis, added another graph panel and also wanted to add a title to its Y axis, then only the Y axis title of the first graph panel would be visible. That is, until we would, say, pan the second graph panel. This was because the QwtScaleWidget for the Y axis of the second graph panel $'didn\342\200\231t' have its internals updated. To $'\342\200\230fix\342\200\231' this, we have to subclass QwtScaleWidget, so that we could call its 'layoutScale()' $'method\342\200\246' commit 57aacb01716f5257f950f53122a931b3fb109147 Author: Alan Garny '' Date: Mon Nov 13 17:43:40 2017 +0100 Some minor cleaning up. commit c391c7e40312b0ce3212898bc1f872ff5a663bbd Author: Alan Garny '' Date: Mon Nov 13 17:40:42 2017 +0100 Some minor cleaning up. commit 9c3eec2b6fee47c1b93cf6d7d1a5a7a8a2668810 Author: Alan Garny '' Date: Mon Nov 13 14:56:47 2017 +0100 GraphPanel widget: make sure that we are properly aligned when adding a graph panel when another has a Y title '(#1426).' commit e38ac8a642adb1ff813379873c7949f5b2bdbd54 Author: Alan Garny '' Date: Mon Nov 13 13:26:23 2017 +0100 Some minor cleaning up. commit 2168d8273fb4f7ba516515b3af5670caa7958a9d Author: Alan Garny '' Date: Sun Nov 12 13:10:44 2017 +0100 Slight update to our what is new page '(#1426).' commit 442ffbe9b0d46045fd6a6572366e883e1aaaf6dd Author: Alan Garny '' Date: Sun Nov 12 13:06:57 2017 +0100 SimulationExperiment view: make sure that all our graph panels get the correct height when adding a graph panel or opening a SED-ML file with several graph panels '(#1426).' commit b48d6df5f77704f5ed183adbb4ad86cb4f59d556 Merge: fa0b5ae35 4075e8281 Author: Alan Garny '' Date: Sat Nov 11 15:59:28 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit 4075e8281fcceef9a56146beeab17011bfaaa32b Author: Alan Garny '' Date: Sat Nov 11 15:58:18 2017 +0100 Slight update to our prerequisites page. commit fa0b5ae3561ce2028870c14c38a5cc5ce2eb4c52 Author: Alan Garny '' Date: Fri Nov 10 18:34:53 2017 +0100 SimulationExperiment view: make sure that all our graph panels get properly initialised when opening a SED-ML file / COMBINE archive '(#1426).' commit 5877d1f25031bee3c6bfedc0f6a32d68a27be2be Author: Alan Garny '' Date: Fri Nov 10 18:31:15 2017 +0100 SimulationExperiment view: better handle the further initialisation of our view due to a SED-ML file '(#1426).' commit f1f84627745e8b9d3184567ec09dbcb5ba3a495d Author: Alan Garny '' Date: Fri Nov 10 17:55:10 2017 +0100 SimulationExperiment view: now have SED-ML support for the foreground colour '(#1426).' commit 07f8e0ff7e413825dd27ec87a4d15bcaa907d727 Author: Alan Garny '' Date: Fri Nov 10 17:49:19 2017 +0100 SimulationExperiment view: now have SED-ML support for the background colour '(#1426).' commit 2c5250572fb0f229a4919c70e29d4837c337aee0 Author: Alan Garny '' Date: Fri Nov 10 17:13:01 2017 +0100 Some minor cleaning up. commit ce944a6f6365a939451a8d3651302e34f04a652e Author: Alan Garny '' Date: Fri Nov 10 16:24:50 2017 +0100 Some minor cleaning up. commit b166b8a127818d4a1b07107ee42120f59dcd3f47 Author: Alan Garny '' Date: Fri Nov 10 13:24:25 2017 +0100 SimulationExperiment view: put back a graph 'panel'\''s' log scale information '(#1426).' I thought I could get away with putting that information as annotation, but SED-ML explicitly requires it to be at the curve $'level\342\200\246' commit 2b31bed573d808a75b834123537fcf2b914f902b Author: Alan Garny '' Date: Fri Nov 10 12:55:11 2017 +0100 Some minor cleaning up. commit 4861604d85c8a1f30e2f0b21a2cd73651883da78 Author: Alan Garny '' Date: Fri Nov 10 11:58:19 2017 +0100 Some minor cleaning up. commit 65002f0c551cfb0cd31fdc100b9e9e37c06d8488 Author: Alan Garny '' Date: Fri Nov 10 11:50:29 2017 +0100 SimulationExperiment view: export all graph panels, even if they 'don'\''t' contain graphs '(#1426).' commit b7e12d35777d2d28623c5608073c18b032a6f318 Author: Alan Garny '' Date: Fri Nov 10 11:37:28 2017 +0100 SimulationExperiment view: export all graph panels, even if they 'don'\''t' contain graphs '(#1426).' commit ac428fa53a988f76e9a9e319086a0879c7362358 Author: Alan Garny '' Date: Fri Nov 10 10:40:18 2017 +0100 Some minor cleaning up. commit 0260eed7d3ec2e310ff9e9df20fb789bb434666f Author: Alan Garny '' Date: Fri Nov 10 10:10:48 2017 +0100 Some minor cleaning up. commit 713983a5cac038a7156909a87147dbc0963e2988 Author: Alan Garny '' Date: Fri Nov 10 10:10:34 2017 +0100 SimulationExperiment view: make sure that the expanded/collapsed state of all graph panel 'editor'\''s' sections remains the same when switching to another graph panel or file '(#1426).' commit 4e8e457c3ef17fc9c67e3b3d4d7ec6dee20f8ac7 Author: Alan Garny '' Date: Fri Nov 10 09:57:18 2017 +0100 Some minor cleaning up. We $'don\342\200\231t' keep track of the horizontal bar value for our other property editors, so why would we do it 'here?…' commit 28381aafff67f0ad60c6dc686f029a9105933b06 Author: Alan Garny '' Date: Fri Nov 10 09:23:33 2017 +0100 Changed the encoding back to UTF-8 '(stupid' Windows 'application!).' commit 86a71e891e2e0fd71dc35c661d55c5eca45a355d Author: Alan Garny '' Date: Fri Nov 10 09:16:10 2017 +0100 Some minor cleaning up. commit aeb0b3ad953fc1000137234414afb7497669f1f4 Author: Alan Garny '' Date: Fri Nov 10 09:09:22 2017 +0100 Some minor cleaning up. commit c031544e89240f5eed551f2c18f83b4fdd825493 Author: Alan Garny '' Date: Thu Nov 9 17:44:11 2017 +0100 SimulationExperiment view: update our French translations '(#1426).' commit 28c7d540b54dadbe614c7f8f843fe9d51039a3db Author: Alan Garny '' Date: Thu Nov 9 17:35:15 2017 +0100 SimulationExperiment view: update our French translations '(#1426).' commit 22a648554142730088f02180325b629fe47e9443 Author: Alan Garny '' Date: Thu Nov 9 17:20:54 2017 +0100 Some minor cleaning up. commit 26ce931368419ffe84de904510fd6fe4b5c09bc2 Author: Alan Garny '' Date: Thu Nov 9 17:00:07 2017 +0100 SimulationExperiment view: can now specify the zoom region settings to be used by a graph panel '(#1426).' commit 451fe8812bba8e426bd96110bae5575e1e49f37c Author: Alan Garny '' Date: Thu Nov 9 16:03:19 2017 +0100 SimulationExperiment view: can now specify the point coordinates settings to be used by a graph panel '(#1426).' commit b14372628bc73da26f689d428178fcc1b7b87e5a Author: Alan Garny '' Date: Thu Nov 9 15:25:01 2017 +0100 Some minor cleaning up. commit 1f33982ecf2f1e9603eaa002ec8cbea35d9cfb9a Author: Alan Garny '' Date: Thu Nov 9 15:24:25 2017 +0100 Some minor cleaning up and refactoring. commit c79d8689f526f89e990ca7f5da54f75d0b97a98f Author: Alan Garny '' Date: Thu Nov 9 15:20:01 2017 +0100 SimulationExperiment view: can now specify the point coordinates settings to be used by a graph panel '(#1426).' Still need to get the coordinates label in the right position with regards to the horizontal and vertical lines highlighting the point for which we want to show the coordinates. commit 0886b8f2bf074eb1d7933a860e329ca02b00c3cd Author: Alan Garny '' Date: Thu Nov 9 15:03:46 2017 +0100 SimulationExperiment view: use an integer for sizes/widths rather than a double '(#1426).' This will make things easier for showing the coordinates of a point / zoom regions. commit 5fa98a0b8328207478f6250a2242fefd8266b466 Author: Alan Garny '' Date: Thu Nov 9 13:33:01 2017 +0100 Some minor cleaning up. commit f18a4a51f455c73d8a71f26b4e69767920443b74 Author: Alan Garny '' Date: Thu Nov 9 11:55:53 2017 +0100 SimulationExperiment view: can now specify the grid lines settings to be used by a graph panel '(#1426).' commit 16c8d55d38f5a5386d1ffdd503b879f892f56ecd Author: Alan Garny '' Date: Thu Nov 9 11:32:36 2017 +0100 GraphPanel widget: slight improvements to our setting of the background colour '(#1426).' commit 96375607cd918b43589347409673b41064cf9246 Author: Alan Garny '' Date: Thu Nov 9 10:54:20 2017 +0100 Some minor cleaning up. commit f60fa4646e1152d9739cc2916f915ef0f7e63928 Author: Alan Garny '' Date: Thu Nov 9 09:58:45 2017 +0100 GraphPanel widget: account for the Y axis title when aligning a graph panel with its neighbours '(#1426).' commit b3bfc01fe847998163e45a2eeea87e3d8b7d0cd8 Author: Alan Garny '' Date: Wed Nov 8 19:49:51 2017 +0100 SimulationExperiment view: can now specify the foreground colour to be used by a graph panel '(#1426).' commit e2b83b3e8e742c022c0b57c5239e6f6180ae83cc Author: Alan Garny '' Date: Wed Nov 8 18:59:20 2017 +0100 SimulationExperiment view: can now specify a title for a graph 'panel'\''s' axes '(#1426).' commit 3fafe746434368dfb136f17fdcdfb9766853a0d7 Author: Alan Garny '' Date: Wed Nov 8 16:58:21 2017 +0100 SimulationExperiment view: can now specify a title for a graph panel '(#1426).' commit 1ac8a8f17fbf05afd01e502ca262ec33d1360777 Author: Alan Garny '' Date: Wed Nov 8 16:40:44 2017 +0100 SimulationExperiment view: remove the visible property for our grid lines '(#1426).' commit 4a5069930f8da272677a1ce45651cee2b8c50d9d Author: Alan Garny '' Date: Wed Nov 8 16:36:06 2017 +0100 SimulationExperiment view: renamed '"Colour"' to '"Background' 'colour"' for our graph panel settings '(#1426).' commit ad44257cfea057de99b657cb5f8cc7c3bc704cc8 Author: Alan Garny '' Date: Wed Nov 8 16:26:22 2017 +0100 SimulationExperiment view: give more importance to our parameters widget than to our graph panel / graphs widget '(#1426).' As a nice side effect, to set stretch factors for our parameters and graph panel / graphs widgets prevents the the vertical scrollbar of our graph panel / graphs widget from quickly flashing the first time we switch files '(probably' a Qt-related 'issue)…' commit 77c9d9d456f4cafa19b221c482936ea220d7d2d6 Author: Alan Garny '' Date: Wed Nov 8 16:20:01 2017 +0100 SimulationExperiment view: give more importance to our parameters widget than to our graph panel / graphs widget '(#1426).' As a nice side effect, to set stretch factors for our parameters and graph panel / graphs widgets prevents the the vertical scrollbar of our graph panel / graphs widget from quickly flashing the first time we switch files '(probably' a Qt-related 'issue)…' commit 4c31edab0a84f8fdf9580987460594b9c0d41595 Author: Alan Garny '' Date: Wed Nov 8 15:33:59 2017 +0100 Some minor cleaning up. commit c860162562715b5e454a57a02113fa000906cec4 Author: Alan Garny '' Date: Wed Nov 8 14:50:14 2017 +0100 Some minor cleaning up. commit 43d24bc68507f9ad2b2b5acfe7c03d25e27d294f Author: Alan Garny '' Date: Wed Nov 8 14:16:49 2017 +0100 SimulationExperiment view: make sure that all our 'solvers'\''' properties are properly translated, and that all of our parameters get properly updated '(#1426).' commit 68634ee2aececf2905a8179d1585d6586d5f199d Author: Alan Garny '' Date: Wed Nov 8 14:15:28 2017 +0100 Some minor cleaning up. commit 8ba2a5da406bdee8a34937771c4075bbecc7438b Author: Alan Garny '' Date: Wed Nov 8 13:38:15 2017 +0100 Some minor cleaning up. commit 2e4a9d171ea40e8d5a059ab95dbd1c2317167a60 Author: Alan Garny '' Date: Wed Nov 8 11:54:13 2017 +0100 SimulationExperiment view: make sure that the labels of a new graph panel editor are initialised '(#1426).' Not a problem for the very first graph panel editor '(since' we call 'retranslateUi()' in the 'constructor),' but definitely one if we add a new graph panel. commit bec99cf43c205bfd350e1dd3949130340ff454af Author: Alan Garny '' Date: Wed Nov 8 11:52:28 2017 +0100 Some minor cleaning up. commit 704c53c4084972ace12abb703df639a554b4ee4d Author: Alan Garny '' Date: Tue Nov 7 18:06:31 2017 +0100 SimulationExperiment view: improved our setting of property 'editors'\''' column widths. commit e8480dda1c4301d4c5681e0890823f50f137c046 Author: Alan Garny '' Date: Tue Nov 7 18:05:46 2017 +0100 Some minor cleaning up. commit 9c02444ae16be1725dda0b4de113e007834fae80 Author: Alan Garny '' Date: Tue Nov 7 18:05:27 2017 +0100 Some minor cleaning up. commit 47221d9d59e771576c7f84c388457fb1b5afe02d Author: Alan Garny '' Date: Tue Nov 7 17:06:42 2017 +0100 Some minor cleaning up. commit fc540c36a37d24bd2a8dc329a3bfd0c118b36b14 Author: Alan Garny '' Date: Tue Nov 7 17:03:18 2017 +0100 SimulationExperiment view: improved our setting of property 'editors'\''' column widths. commit 961d859067f6c7737c24c53607c24a5bcecfe4c4 Author: Alan Garny '' Date: Tue Nov 7 16:48:38 2017 +0100 Some minor cleaning up. commit 6d643cdfacef6abb000ee8a7a82f0270b4787435 Author: Alan Garny '' Date: Tue Nov 7 16:48:25 2017 +0100 PropertyEditor widget: make sure that we are double clicking on a property before trying to change its colour value '(#1426).' commit 9610d7b1b909ff2604b21b7ebd539ff0de98dcf7 Author: Alan Garny '' Date: Tue Nov 7 16:47:19 2017 +0100 Some minor cleaning up. commit f91776930105d901e855656d8cee28ac318c856f Author: Alan Garny '' Date: Tue Nov 7 16:25:25 2017 +0100 Some minor cleaning up. commit 7a090a2af2c769d8ba2ea89e51dbcc8704624aa8 Author: Alan Garny '' Date: Tue Nov 7 15:58:26 2017 +0100 Some minor cleaning up. commit bd76da0401c5faa9ab0da9a3a81fcbf58069dcee Author: Alan Garny '' Date: Tue Nov 7 15:34:29 2017 +0100 GraphPanel widget: also change the colour of the background surrounding the canvas '(#1426).' commit 9042bc58b935ba60d2ab961eed341be2b61f4a5a Author: Alan Garny '' Date: Tue Nov 7 15:08:17 2017 +0100 GraphPanel widget: also change the colour of the background surrounding the canvas '(#1426).' commit 8da22f8dc008b035a4b6047ff4a74dd7468598d0 Author: Alan Garny '' Date: Tue Nov 7 15:06:17 2017 +0100 Some minor cleaning up. commit 8e30dbebedf548be631d1a864ac5571d7db60733 Author: Alan Garny '' Date: Tue Nov 7 14:33:12 2017 +0100 Reverting commit 66250bb. This was a bad move since we use the parent of a CommonWidget object when showing a busy widget. In other words, the parent gets disabled, which can be problematic if we use the $'\342\200\230wrong\342\200\231' parent. This is what happened with our CellML Annotation view. After commit 66250bb, as soon as we would type one character in the Term field, the busy widget would kick in and the whole OpenCOR application would be disabled. In other words, after entering one character, we had to wait for the ontological terms to be retrieved. Not great at 'all!' commit bcacadcd9fc09dfe144f76016f21ce015dcae568 Author: Alan Garny '' Date: Mon Nov 6 18:46:14 2017 +0100 SimulationExperiment view: make sure that our graph panel gets properly replotted when changing some of its properties '(#1426).' Indeed, if we were to pan the Y axis '(so' that it would now range from, say, -10 to '990)' and increase the font size, then everything would be fine. However, if we were to reset the font size to its original value, then we would get a $'\342\200\230big\342\200\231' gap to the left of the Y axis labels. commit ed3d454d1c04ab6691b49b574014d15dc5d644a0 Author: Alan Garny '' Date: Mon Nov 6 18:32:48 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours '(#1426).' commit 619cb7dfdc497530b4da0849b400e5c3a777df3a Author: Alan Garny '' Date: Mon Nov 6 18:32:11 2017 +0100 Some minor cleaning up. commit be9ce35fcbd6cc0f878926511384d3f6efabd3dd Author: Alan Garny '' Date: Mon Nov 6 16:47:09 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours '(#1426).' commit 8c1382a3addb8bece5eba2b1adff0ced2dc192c4 Author: Alan Garny '' Date: Mon Nov 6 16:41:24 2017 +0100 GraphPanel widget: make sure that the background works with semi-transparent colours '(#1426).' commit db5b4a87567882a9b7a1d58996f6c9457467edbb Author: Alan Garny '' Date: Mon Nov 6 15:17:54 2017 +0100 PropertyEditor widget: make sure that we get the focus back straightaway when changing a colour property. commit eb72e9c123dc5295d3c44ec070414d500ef5a2ba Author: Alan Garny '' Date: Mon Nov 6 14:08:10 2017 +0100 Some minor cleaning up. commit b8b74eea2e5963c32cafcd6400f3a830abb8dcc2 Author: Alan Garny '' Date: Mon Nov 6 13:32:03 2017 +0100 SimulationExperiment view: make sure that our graph panel gets properly replotted when changing some of its properties '(#1426).' Indeed, if we were to pan the Y axis '(so' that it would now range from, say, -10 to '990)' and increase the font size, then everything would be fine. However, if we were to reset the font size to its original value, then we would get a $'\342\200\230big\342\200\231' gap to the left of the Y axis labels. commit c299a3b2ae2d5405d91942e7b3eb9b794db3c1ed Merge: 6d3fad8d7 e13916523 Author: David Brooks '' Date: Mon Nov 6 19:49:32 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 6d3fad8d7cfa778c63a1d9f9474c5d636ae05912 Author: David Brooks '' Date: Mon Nov 6 19:46:14 2017 +1300 Python: bundle lxml package '(version' '4.1.1).' commit a8aa8228611d83da37e941c1e4d70a5b1b37129f Author: David Brooks '' Date: Mon Nov 6 19:45:41 2017 +1300 Python: upgrade matplotlib to v2.1.0. commit 4a9bfc9eb073ec69aff14e43b2adb0c8b7d4b851 Author: David Brooks '' Date: Mon Nov 6 19:41:57 2017 +1300 Python: upgrade numpy to v1.13.3. commit c8f985dac5a5dcc72028270d14269db7f64f44b4 Author: David Brooks '' Date: Mon Nov 6 19:35:43 2017 +1300 SUNDIALS: upgraded to version 3.0.0 '(#1453).' commit 35b0bbd4eb0eeee8a37ebaacd57cd7e20bb5e6a6 Merge: df47d90e2 616824956 Author: David Brooks '' Date: Sun Nov 5 10:09:32 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit c0a8ec92206158bcf2f3e9dc2b2524b1d920a312 Merge: ec13b4f65 e13916523 Author: Alan Garny '' Date: Sat Nov 4 13:51:44 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit e139165233ade2b421102f573c98a5ddcc242720 Merge: 2480afc7f 0345eb6e2 Author: Alan Garny '' Date: Sat Nov 4 13:50:12 2017 +0100 Make sure that we take advantage of clcache, if it is installed. commit 0345eb6e2fdc5a4ddda88591bc4aa7f6c61a3429 Author: Alan Garny '' Date: Sat Nov 4 13:08:08 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. Although clcache 'doesn'\''t' currently support the /Zi comiler option, it does actually support the /Z7 one '(since' that option 'doesn'\''t' generate .PDB files, which is the reason clcache 'doesn'\''t' currently support the /Zi compiler 'option).' commit 686eb75da9753c975d9f8e6fb9b2ca589d936dae Author: Alan Garny '' Date: Sat Nov 4 11:24:58 2017 +0100 Make sure that CMake 'doesn'\''t' force us to use the compilation flags it wants us to use. commit 41dca11a9f3bd1d35c0e72eac81ab5d41b7223f2 Author: Alan Garny '' Date: Sat Nov 4 10:41:40 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 2889808fd6b9c6cc8762a9a9abd568faa87fe0ea Author: Alan Garny '' Date: Fri Nov 3 20:33:58 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 146caa169cb454d08dba605a541f7bb3020ee3d4 Author: Alan Garny '' Date: Fri Nov 3 17:16:26 2017 +0100 Make sure that we can take advantage of clcache, if it is installed. commit 32cc3bcd981622a9a9a55fae84c7e6f449274423 Author: Alan Garny '' Date: Fri Nov 3 17:12:03 2017 +0100 Make sure that our runpath2rpath program gets compiled with full optimisations. commit 1ae3f62b0fb854d0e76aeadc52636993c63c77bc Author: Alan Garny '' Date: Fri Nov 3 17:11:31 2017 +0100 Some minor cleaning up. commit ec13b4f65f79a325c99009d7b2931dea7e1c39b0 Merge: 62b9d45bc 2480afc7f Author: Alan Garny '' Date: Fri Nov 3 11:19:27 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit 2480afc7fa9092e1eeab3fb3f75e11deba0aa398 Merge: a2e638fa2 eac682d1a Author: Alan Garny '' Date: Fri Nov 3 11:18:44 2017 +0100 OpenSSL: upgraded to version 1.0.2m '(closes' '#1458).' commit eac682d1aeed11483865d7807ccc61d9023c0f77 Author: Alan Garny '' Date: Fri Nov 3 10:40:44 2017 +0100 Slight updates to our third-party libraries and downloads pages '(#1458).' commit 3341076f27e267eb816e88bb8f4bccb9c59810c2 Author: Alan Garny '' Date: Fri Nov 3 10:36:33 2017 +0100 OpenSSL package: 'don'\''t' build OpenSSL anymore '(#1458).' commit 7a83cf65e392e0a1d889efd9246488c07622ce0e Author: Alan Garny '' Date: Fri Nov 3 10:35:33 2017 +0100 OpenSSL package: built OpenSSL 1.0.2m on Windows, Linux and macOS '(#1458).' commit 4ac6bebbaf6243d47ca916b7b28ec09103f2609b Author: Alan Garny '' Date: Fri Nov 3 10:02:24 2017 +0100 OpenSSL package: getting ready to build OpenSSL 1.0.2m '(#1458).' commit 62b9d45bceb30eaef21cfe49c0456200553857f2 Merge: fe878172e a2e638fa2 Author: Alan Garny '' Date: Fri Nov 3 08:37:05 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit a2e638fa24902f9b7f5878ab819c0fa36ac8f713 Author: Alan Garny '' Date: Fri Nov 3 08:35:58 2017 +0100 CMake: enforce the use of Qt 5.9.2 LTS. commit fe878172e670d90f7a81e29a8f00fecc1a4b73d6 Author: Alan Garny '' Date: Thu Nov 2 18:09:01 2017 +0100 SimulationExperiment view: make sure that a model could be compiled before setting the current widget to our graph panel or graphs property editor '(#1426).' commit 1bddb1eab91a108d636ec46efec7fb9fbe40ea69 Author: Alan Garny '' Date: Thu Nov 2 17:57:15 2017 +0100 PropertyEditor widget: can now initialise the selection of a colour by double clicking on a colour icon. commit e1ba0851c32097e624be72bb4a194de382accb3e Author: Alan Garny '' Date: Thu Nov 2 17:38:18 2017 +0100 Removed our test code. commit 64343bea8a9c3bac02fb455e57bef195b2ccd846 Author: Alan Garny '' Date: Thu Nov 2 16:50:30 2017 +0100 Some minor cleaning up. commit 494cb3b6b7feefd487585c1972fdef269bb5169d Author: Alan Garny '' Date: Thu Nov 2 16:06:39 2017 +0100 Just for testing... commit 58e31b26f7ec1bea09e442f5dabe25fdab132fe6 Author: Alan Garny '' Date: Thu Nov 2 16:03:50 2017 +0100 Some minor cleaning up. commit 1b56c60491ab40915831ecdf6a8eb054c6a16c54 Author: Alan Garny '' Date: Thu Nov 2 14:34:52 2017 +0100 PropertyEditor widget: can now initialise the selection of a colour by double clicking on/near a colour icon. commit 92936693d663cd167cd340a73a4c2fdf40cdb7fa Author: Alan Garny '' Date: Thu Nov 2 13:45:19 2017 +0100 Some minor cleaning up. commit ab84acb57885003c04de5fbf44f3834280c02c3b Merge: 2ad510613 f5750edc8 Author: Alan Garny '' Date: Thu Nov 2 12:40:09 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit f5750edc8663d220fa268f7bb1e4013104299747 Merge: 616824956 e977c4170 Author: Alan Garny '' Date: Thu Nov 2 12:39:13 2017 +0100 Renamed our GitHub repository from opencor/qtwebkitreloaded to opencor/qtwebkit. commit e977c4170b31a2aa295c07a6c3be062709773655 Author: Alan Garny '' Date: Thu Nov 2 11:35:25 2017 +0100 Renamed our GitHub repository from opencor/qtwebkitreloaded to opencor/qtwebkit. I had completely overlooked the fact that there is an official Qt mirror on GitHub. commit 2ad510613bde0fb27988707c214560011dcd9774 Merge: 9acad7066 616824956 Author: Alan Garny '' Date: Thu Nov 2 09:34:36 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit 616824956a904fe7e4fa986457b2e9ac8d5ce3a1 Author: Alan Garny '' Date: Thu Nov 2 09:33:54 2017 +0100 Slight update to our prerequisites page '[ci' 'skip].' commit 9acad7066f4aa3d39df7307fe450c384b9c9601f Merge: aa407bc62 f3a18e7ba Author: Alan Garny '' Date: Tue Oct 31 23:52:15 2017 +0100 Merge branch ''\''master'\''' into issue1426 commit f3a18e7ba0bd039222d9749b454e1998c04e8ff0 Author: Alan Garny '' Date: Tue Oct 31 23:51:05 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit aa407bc626d161d97ab56f8eb54609387ac49412 Merge: c4ddb2f9b c3111be16 Author: Alan Garny '' Date: Tue Oct 31 18:41:21 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit c3111be16bf329a03087d45d1dde3b3b228b5c92 Author: Alan Garny '' Date: Tue Oct 31 18:39:57 2017 +0100 Slight changes to our prerequisites page '[ci' 'skip].' commit c4ddb2f9b7c7bb2674ff36330c7edfd6ec12d9bc Merge: 8322779bf bc6f907b0 Author: Alan Garny '' Date: Tue Oct 31 15:17:46 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit bc6f907b02ca1d4532099947312cd54caea3ee83 Author: Alan Garny '' Date: Tue Oct 31 14:45:23 2017 +0100 Travis CI: some minor cleaning up. commit 8322779bf24537899c7d77613c1609fb245934f6 Author: Alan Garny '' Date: Tue Oct 31 14:15:20 2017 +0100 PropertyEditor widget: fixed a small problem with the icon we generate for a colour property. commit 0f3ffe1fb77d193c7b69c957fac70a4f8a6653af Author: Alan Garny '' Date: Tue Oct 31 14:12:48 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor '(#1426).' commit a2b6b4740d85575107982abafac18e5a3453ff05 Author: Alan Garny '' Date: Tue Oct 31 10:41:14 2017 +0100 Some minor cleaning up. commit b9f19df6d057397c0555173ec13cf9e75d42dad3 Author: Alan Garny '' Date: Tue Oct 31 10:27:20 2017 +0100 Some minor cleaning up. commit 46dac2bd791ca02c2c17a251a87afec228680c2c Author: Alan Garny '' Date: Tue Oct 31 10:26:49 2017 +0100 SimulationExperiment view: can now select a colour using the graph panel context menu '(#1426).' commit 3281c6ce9fda7d83bd39fff92755210729fab587 Author: Alan Garny '' Date: Tue Oct 31 09:41:41 2017 +0100 SimulationExperiment view: some minor refactoring '(#1426).' commit 2a8c3431344db4a972b41a98aa7e33df157ca53f Author: Alan Garny '' Date: Mon Oct 30 19:18:59 2017 +0100 SimulationExperiment view: $'don\342\200\231t' use a signal to let people a graph settings have been changed, but replot the $'graph\342\200\231s' plot straightaway instead. commit 2eefc317b7f334f4cbaf794aac6153ec016fd6c1 Author: Alan Garny '' Date: Mon Oct 30 19:05:48 2017 +0100 SimulationExperiment view: can now modify the colour, font size and $'axes\342\200\231' scale of a graph panel '(#1426).' commit 1e068d499e31313b4ab3e46066d0f829526d3912 Author: Alan Garny '' Date: Mon Oct 30 17:25:01 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor '(#1426).' commit 7832e0d279c833a9461417541aea0a7f7e47d644 Author: Alan Garny '' Date: Mon Oct 30 17:12:40 2017 +0100 SimulationExperiment view: some work on populating our graph panel property editor '(#1426).' commit fe2dffe34a703db969b86ffbaba6c5b54378ec3d Author: Alan Garny '' Date: Mon Oct 30 16:42:03 2017 +0100 PropertyEditor widget: distinguish between all and root properties. commit 03e2d76b7ca9afe660ecfad93f96f4f0fd62c14b Author: Alan Garny '' Date: Mon Oct 30 15:35:29 2017 +0100 Some minor cleaning up. commit 5cf713aa5a81c73d9fc722245f7fe9efd3683977 Merge: 9063ba1c2 4e517832b Author: Alan Garny '' Date: Mon Oct 30 12:47:04 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit 4e517832b996210ff7aa8122f480c39cf2d33347 Merge: f91bca71e af12f7635 Author: Alan Garny '' Date: Mon Oct 30 12:45:25 2017 +0100 Updated our copy of QtSingleApplication. commit af12f76357066e68190ffdd82dd37bb5b731ab18 Author: Alan Garny '' Date: Mon Oct 30 11:47:00 2017 +0100 Travis CI: upgraded to Qt 5.9.2 LTS on Linux. commit 511b48a76b97a5552d5ebdd45cab68909b9979a3 Author: Alan Garny '' Date: Mon Oct 30 11:21:56 2017 +0100 CMake: make sure that UNICODE is defined. commit f6c3fd44b8b186ac9230a877b745a74cf1628dc8 Author: Alan Garny '' Date: Mon Oct 30 11:13:31 2017 +0100 QtSingleApplication: some minor cleaning up. commit 9063ba1c256425a88d4d40812b4843f1c94f1006 Merge: 10ba9b38d f91bca71e Author: Alan Garny '' Date: Mon Oct 30 10:50:59 2017 +0100 Merge branch ''\''master'\''' into issue1426. commit f91bca71e7dea51228c90c3b118dede8bce8134f Author: Alan Garny '' Date: Mon Oct 30 10:49:54 2017 +0100 Slight update to our third-party libraries page '[ci' 'skip].' commit 10ba9b38dc3898beea4a0661afa1b3b4a928e44a Author: Alan Garny '' Date: Sun Oct 29 16:56:30 2017 +0100 SimulationExperiment view: removed the '"Logarithmic' X 'Axis"' and '"Logarithmic' Y 'Axis"' menu items from a graph 'panel'\''s' context menu '(#1426).' commit ad2825c81b8ffdec50df36d144fee6bca0b38208 Author: Alan Garny '' Date: Sun Oct 29 16:11:34 2017 +0100 SimulationExperiment view: can now select and show our graph panel or graphs settings from a graph $'panel\342\200\231s' context menu '(#1426).' commit 89455872118df246b325e3bc5ccf40b89f0e358a Author: Alan Garny '' Date: Sun Oct 29 15:35:15 2017 +0100 Some minor cleaning up. commit df9da73b82b0d4184da1ceef7e7a98a64f3d840d Author: Alan Garny '' Date: Sun Oct 29 13:01:08 2017 +0100 SimulationExperiment view: added some menu items to get access to our Graph Panel and Graphs settings '(#1426).' commit 0fe40bab1e56053f107e73e58b63a5ecd69f3202 Author: Alan Garny '' Date: Sun Oct 29 11:51:29 2017 +0100 SimulationExperiment view: added some menu items to get access to our Graph Panel and Graphs settings '(#1426).' commit 9d9eb91e207629043021df18b2379537f1ede139 Author: Alan Garny '' Date: Sun Oct 29 11:09:26 2017 +0100 Some minor cleaning up. commit 2f5cc3176244c26720a2dd41191ac3188bfdeb50 Author: Alan Garny '' Date: Sun Oct 29 11:06:54 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor '(#1426).' commit d283369dcc9c127f7496616b45a01772468af346 Author: Alan Garny '' Date: Sun Oct 29 11:01:05 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor '(#1426).' commit c6b8efc32ec40e7950e262fc4bcecf400de6de3f Author: Alan Garny '' Date: Sun Oct 29 10:44:52 2017 +0100 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor '(#1426).' commit 34ce446dff3328051b724609032f5d0748197867 Author: Alan Garny '' Date: Sat Oct 28 19:04:57 2017 +0200 SimulationExperiment view: some work on distinguishing our graph panel property editor from our graphs property editor '(#1426).' commit c84b08ca25092013997bd4dafe95f57e939e9b3c Author: Alan Garny '' Date: Sat Oct 28 11:40:17 2017 +0200 SimulationExperiment view: some work on distinguishing our '(future)' graph panel property editor from our '(existing)' graphs property editor '(#1426).' commit e01002596ae979c3860d4a2dce01615a20dd77ae Author: Alan Garny '' Date: Sat Oct 28 11:15:37 2017 +0200 SimulationExperiment view: removed the shell of a graph panel and graphs specific property editor '(#1426).' Indeed, refactoring the Graphs property editor was proving to be too tedious, not to mention that this meant several instances of our context menu, etc. one for each graph panel. So, not optimal at all. commit baf26726252b42d2618d21d2260156e789e7ccc9 Author: Alan Garny '' Date: Fri Oct 27 19:24:24 2017 +0200 SimulationExperiment view: added the shell of a graph panel and graphs specific property editor '(#1426).' commit e083d8a7e5a5d189a9c95b53639986d57cdf98b0 Author: Alan Garny '' Date: Fri Oct 27 19:23:11 2017 +0200 SimulationExperiment view: added the shell of a graph panel and graphs specific property editor '(#1426).' commit 6e0119f24f9d819a577e2995ed5dd4e258bea9d0 Author: Alan Garny '' Date: Fri Oct 27 19:05:59 2017 +0200 Some minor cleaning up. commit 66250bb8c3e29d1cc072e3058cd74d95badfa754 Author: Alan Garny '' Date: Fri Oct 27 18:59:15 2017 +0200 Some minor cleaning up. commit 1457fb644855a6edb62710e9f75fc5d3eb290863 Merge: 33bc3acd0 bfb19e8e5 Author: Alan Garny '' Date: Fri Oct 27 18:19:07 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit bfb19e8e55d9a6b2510d54d458333d49e1ac6ec6 Merge: 3227b22b1 c887ef82c Author: Alan Garny '' Date: Fri Oct 27 18:17:52 2017 +0200 SUNDIALS: upgraded to version 3.0.0 '(closes' '#1453).' commit c887ef82cbcb0fa5e39b1348e777b7bb7bbe2457 Author: Alan Garny '' Date: Fri Oct 27 17:20:47 2017 +0200 Some minor cleaning up. commit 90cc7fe6e8eb27caab102f6fb50383347fdafd79 Author: Alan Garny '' Date: Fri Oct 27 17:20:34 2017 +0200 Slight update to our downloads page '(#1453).' commit 43d9a140941deaab0d5afd2b3cbf5e5f25809a16 Author: Alan Garny '' Date: Fri Oct 27 17:20:16 2017 +0200 SUNDIALS package: generated the package on Windows '(#1453).' commit 5fa41f300cd0d229ca2197435b362b69792e4321 Author: Alan Garny '' Date: Fri Oct 27 17:05:02 2017 +0200 SUNDIALS package: generated the package on Linux '(#1453).' commit d226180251d94fe59e58d50fbd2fdc9880a93cb1 Author: Alan Garny '' Date: Fri Oct 27 16:59:54 2017 +0200 SUNDIALS package: generated the package on macOS '(#1453).' commit 93777607879c0272333bc96f2f3c234ddb47d543 Author: Alan Garny '' Date: Fri Oct 27 16:59:15 2017 +0200 Getting ready to build the SUNDIALS package '(#1453).' commit f9e07174d89394440f363144684f27baf79a9d23 Author: Alan Garny '' Date: Fri Oct 27 16:58:24 2017 +0200 Updated our SUNDIALS-based solvers '(#1453).' commit 533642541c94c8783228505588a882bd39c4a9ed Author: Alan Garny '' Date: Fri Oct 27 14:14:17 2017 +0200 Getting ready to build the SUNDIALS package '(#1453).' commit 33bc3acd0b8f2f80e5005f46871a6e5fab6b2a79 Author: Alan Garny '' Date: Fri Oct 27 12:59:57 2017 +0200 Some minor cleaning up. commit ae070c8150588a2837ddc7e05763734698784359 Author: Alan Garny '' Date: Thu Oct 26 16:24:33 2017 +0200 Some minor cleaning up. commit 53834e449f6688fc0a421b47fc28b66c7693d36c Author: Alan Garny '' Date: Thu Oct 26 15:42:00 2017 +0200 Some minor cleaning up. commit cdc2f0b886a617f67dd6208fbc5760b8ff91ea4c Author: Alan Garny '' Date: Thu Oct 26 15:08:06 2017 +0200 Some minor cleaning up. commit 49a73ccdb221295b804ff053c97384d91e09d7ce Author: Alan Garny '' Date: Thu Oct 26 10:04:40 2017 +0200 Renamed 'src/simulationexperimentviewinformationgraphpanelwidget.*' to 'src/simulationexperimentviewinformationgraphpanelandgraphswidget.*' '(#1426).' commit 2a597c6b14afce2b58c856afed11651382b42580 Author: Alan Garny '' Date: Thu Oct 26 09:43:49 2017 +0200 Renamed 'src/simulationexperimentviewinformationgraphpanelwidget.*' to 'src/simulationexperimentviewinformationgraphpanelandgraphswidget.*' '(#1426).' commit d2282254f2fa166082ff432ef0f56dd3468d73c5 Author: Alan Garny '' Date: Wed Oct 25 23:03:29 2017 +0200 SimulationExperiment view: our '"Graph' 'Panel"' panel now has a menu to switch between graphs and graph panel settings '(#1426).' commit c5a86628d212fb2fd31b4b5fe4ce77fb69ed436a Author: Alan Garny '' Date: Wed Oct 25 22:56:34 2017 +0200 SimulationExperiment view: our '"Graph' 'Panel"' panel now has a menu to switch between graphs and graph panel settings '(#1426).' commit ca567a126aef7b9863ff4c42ff88426570c1477d Author: Alan Garny '' Date: Wed Oct 25 22:39:51 2017 +0200 SimulationExperiment view: our '"Graph' 'Panel"' panel now has a menu to switch between graphs and graph panel settings '(#1426).' commit 8f69b8fbbf0c53cc5af79d8b7a6ca927133def82 Author: Alan Garny '' Date: Wed Oct 25 22:36:10 2017 +0200 SimulationExperiment view: our '"Graph' 'Panel"' panel now has a menu to switch between graphs and graph panel settings '(#1426).' commit ea96359efdfd7c0289306ecc8a917ab6c083b9de Author: Alan Garny '' Date: Wed Oct 25 11:35:05 2017 +0200 Collapsible widget: added support for a menu to the right '(#1426).' commit df47d90e2235050ae65fa2002d8838734d7a3e30 Merge: aeeb247ca 3227b22b1 Author: David Brooks '' Date: Wed Oct 25 22:25:07 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit eddb3715e2b7a06dd055929d450ac10607521d9f Author: Alan Garny '' Date: Wed Oct 25 10:38:43 2017 +0200 Collapsible widget: added a menu icon to the right '(#1426).' commit bfff6da0ed1bb4c77bab3a30b7fd1b1764bf367d Author: Alan Garny '' Date: Wed Oct 25 10:37:28 2017 +0200 Added a menu icon '(#1426).' commit 63c6b2558898ab7bb316c0e92406aaf26e7b0259 Author: Alan Garny '' Date: Wed Oct 25 08:44:13 2017 +0200 Some minor cleaning up. commit 917ed87d60dcfe3cc2e7e8916a348b805708a12b Merge: 7346bf9cf 3227b22b1 Author: Alan Garny '' Date: Tue Oct 24 19:12:38 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit 3227b22b1df32007c41a5ac96059e4dfb57170be Merge: c5b495ae6 5308e8d2c Author: Alan Garny '' Date: Tue Oct 24 19:11:19 2017 +0200 Ignore the '"libpng' warning: iCCP: known incorrect sRGB 'profile"' warning. commit 7346bf9cf22b780a0579277289b46d7f95935167 Merge: d0fb0c704 5308e8d2c Author: Alan Garny '' Date: Tue Oct 24 18:01:08 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit 5308e8d2ce4e7d539b9a231525ba5818eca5a4b2 Author: Alan Garny '' Date: Tue Oct 24 17:55:22 2017 +0200 Ignore the '"libpng' warning: iCCP: known incorrect sRGB 'profile"' warning. commit aeeb247ca8b5dba38e012e200ba39afac4b39faa Author: David Brooks '' Date: Tue Oct 24 13:16:14 2017 +1300 Python: new PythonQt library '(with' WebKit 'wrappers)' for macos. commit 69640dfa36531547188b577862b0db16bce3b597 Merge: 38c0707c4 c5b495ae6 Author: David Brooks '' Date: Tue Oct 24 13:07:54 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 38c0707c417095abd0c49c4b60dd36d09c353d92 Author: David Brooks '' Date: Tue Oct 24 13:03:51 2017 +1300 Python: rework console creation code. commit 8b3f6478471356cb5197ac573458b3d6c51785ea Author: David Brooks '' Date: Tue Oct 24 13:02:21 2017 +1300 Python: remove unused code. commit f4709d3fc3865139798b0b9e26ad8e9eef53666c Author: David Brooks '' Date: Tue Oct 24 13:01:44 2017 +1300 Python: get our Web browser as a QWebView. commit eae54cafaeb675c3ea94a24e43893f038e9396eb Author: David Brooks '' Date: Tue Oct 24 12:47:44 2017 +1300 Python: tidy up code. commit 65eb7b9fd9cd3c949cec3c62d471fc3f1a0d6d59 Author: David Brooks '' Date: Tue Oct 24 12:36:19 2017 +1300 Python: build Qt wrappers for WebKit. commit 1bd9e9433359bd9db4c888399c0b80989800ecd1 Author: David Brooks '' Date: Tue Oct 24 12:34:10 2017 +1300 Python: 'don'\''t' include interface code when building WebKit libraries. commit c5b495ae6fdd08b734126b0d29d1e9937df55500 Merge: 96fd4f59d 7c06d13db Author: Alan Garny '' Date: Mon Oct 23 23:56:46 2017 +0200 GraphPanel widget: can now interact with a graph panel after it has been exported to a given format '(closes' '#1450).' commit 7c06d13db07d6f7f293c3f8b367bd891da17c2cf Author: Alan Garny '' Date: Mon Oct 23 20:12:28 2017 +0200 Slight update to our downloads page '(#1450).' commit 4e3aba83f1312e985e9c960311d115ea681201ad Author: Alan Garny '' Date: Mon Oct 23 20:11:08 2017 +0200 GraphPanel widget: can now interact with a graph panel after it has been exported to a given format '(#1450).' commit 96fd4f59d4686a72b6763935c258cb7ab20c7132 Merge: a45d450a1 8052d177f Author: Alan Garny '' Date: Mon Oct 23 20:03:05 2017 +0200 GraphPanel widget: axis labels are now rendered fine when exporting a graph panel to various formats '(closes' '#1448).' commit 8052d177f0bd5b2992e07ff87c81b059c3c6c7f5 Author: Alan Garny '' Date: Mon Oct 23 17:20:34 2017 +0200 Slight updates to our downloads pages '(#1448).' commit c8be8de8740519520f4b5d87b0bc4d3b27b41ec6 Author: Alan Garny '' Date: Mon Oct 23 17:17:55 2017 +0200 GraphPanel widget: axis labels are now rendered fine when exporting a graph panel to various formats '(#1448).' commit d0fb0c70444d164676026c122a5d245d2e2e9938 Merge: e9946a906 a45d450a1 Author: Alan Garny '' Date: Mon Oct 23 14:47:23 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit a45d450a1cc1d4df6ff6b9dd45d049e54cd8b2bf Author: Alan Garny '' Date: Mon Oct 23 14:46:12 2017 +0200 Slight update to our third-party libraries page '[ci' 'skip].' commit 6db7a2f6f0cf32bfe0f56fe502bf8ba5af73605a Author: Alan Garny '' Date: Mon Oct 23 14:42:41 2017 +0200 QtWebKit package: slight update to our readme file '[ci' 'skip].' commit e9946a906d5a56c5551f9be1c06ef02f9b8369dc Merge: 7bbeb2479 bf985c240 Author: Alan Garny '' Date: Mon Oct 23 11:40:34 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit bf985c2405144ca99a638d45210458d8d673c0de Merge: 24cf7539d fe502c223 Author: Alan Garny '' Date: Mon Oct 23 11:39:50 2017 +0200 New snapshot. commit 7bbeb2479fbef6dac1473efa92584770bb2514fa Merge: 46cb7860c fe502c223 Author: Alan Garny '' Date: Mon Oct 23 10:29:20 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit fe502c2234f8381a87ef1566e0d1afcf0f141bbb Author: Alan Garny '' Date: Mon Oct 23 10:22:11 2017 +0200 New snapshot. commit 24cf7539d6ea8cdd6298ea3de74cb76419aadb5d Merge: c7ea57847 e2aeb8b54 Author: Alan Garny '' Date: Mon Oct 23 10:03:47 2017 +0200 Qt: switched to QtWebKit Reloaded '(closes' '#1149).' commit e2aeb8b547a0fcad3e58a64862380258baa41e65 Author: Alan Garny '' Date: Mon Oct 23 09:08:15 2017 +0200 Slight update to our downloads page '(#1149).' commit 42485bea8e55a732144d086b76bad6169ab7aacf Author: Alan Garny '' Date: Mon Oct 23 08:42:17 2017 +0200 QtWebKit package: make sure that symbolic links are also packaged on Linux '(#1149).' commit aa2a67ac4e33f181ebb5b7e55d57ddf83a117291 Author: Alan Garny '' Date: Sun Oct 22 16:34:19 2017 +0200 QtWebKit package: $'don\342\200\231t' retrieve our additional Windows dependencies here anymore '(#1149).' Indeed, we retrieve them and unpack them fine, but then 'ExternalProject_Add()' actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 249a00942aa23497e42c57d54719c50d1daaa9ea Author: Alan Garny '' Date: Sun Oct 22 15:55:52 2017 +0200 QtWebKit package: $'don\342\200\231t' retrieve our additional Windows dependencies here anymore '(#1149).' Indeed, we retrieve them and unpack them fine, but then 'ExternalProject_Add()' actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 846c21975670ed96029a2215af510ea9c28fae19 Author: Alan Garny '' Date: Sun Oct 22 12:28:55 2017 +0200 QtWebKit package: $'don\342\200\231t' retrieve our additional Windows dependencies here anymore '(#1149).' Indeed, we retrieve them and unpack them fine, but then 'ExternalProject_Add()' actually deletes and recreates the folder, meaning that we lose our additional Windows dependencies. So, instead, we should ask our QtWebKit build system to do it. commit 4ec137344e2b3fa80243d21520cd7776454162a7 Author: Alan Garny '' Date: Sun Oct 22 12:23:32 2017 +0200 QtWebKit package: yes, we still need to let OpenCOR know about QtWebKit '(#1149).' commit ca9f1c03efebcfb842dbd3c35ff03a75ed3f85d7 Author: Alan Garny '' Date: Sun Oct 22 10:22:06 2017 +0200 QtWebKit package: make sure that our debug binaries are properly deployed on Windows '(#1149).' commit 42b10b5a100a7573a0d13d8da255744814b04b41 Author: Alan Garny '' Date: Sun Oct 22 10:11:30 2017 +0200 QtWebKit package: make sure that our binaries are properly deployed on Windows '(#1149).' commit 6936652947deed909dca4c79b782e08c18b490c6 Author: Alan Garny '' Date: Sat Oct 21 23:22:20 2017 +0200 QtWebKit package: make sure that we can find our CMake files on Windows '(#1149).' commit 2bfc49faf3883bb76104e6b2a68cac2e20576fee Author: Alan Garny '' Date: Sat Oct 21 22:55:34 2017 +0200 QtWebKit package: on Windows, retrieve our additional dependencies and ''\''install'\''' some ICU files only when having to build QtWebKit '(#1149).' commit b205b4e86246f3ef6ef00b64123ec173099d9cd1 Author: Alan Garny '' Date: Sat Oct 21 22:03:19 2017 +0200 QtWebKit package: new binaries for Windows, Linux and macOS '(#1149).' commit 4077164a0da0645bae22751ad917b80556e26f4b Author: Alan Garny '' Date: Sat Oct 21 21:23:19 2017 +0200 QtWebKit package: should now be able to build on Windows '(#1149).' commit 93c6556562580c359d0c51fbc6a861fe84a56797 Author: Alan Garny '' Date: Sat Oct 21 21:22:27 2017 +0200 Some minor cleaning up. commit 0c27d7ac7f2d89849a7be7cf3ce8d0e46e45d5a5 Author: Alan Garny '' Date: Sat Oct 21 20:48:11 2017 +0200 QtWebKit package: include the JPEG and PNG libraries to our SHA1 list on macOS '(#1149).' commit 9d6105cad62b571e268c7d527d71eeb2ede635e1 Author: Alan Garny '' Date: Sat Oct 21 19:00:57 2017 +0200 QtWebKit package: some work on generating binaries on Windows '(#1149).' commit 300dfe9b1ec9f8321b858902761177c2c8d14e5a Author: Alan Garny '' Date: Sat Oct 21 16:41:09 2017 +0200 Some minor cleaning up '(#1149).' commit a5b8595ac86f579e0d99111ae59bf9de213e2271 Author: Alan Garny '' Date: Sat Oct 21 14:25:12 2017 +0200 QtWebKit package: mention where we got the prebuilt version of our additional dependencies '(#1149).' commit 07406cd953cff30e850815079a5e4a04dff1b2e2 Author: Alan Garny '' Date: Fri Oct 20 19:20:04 2017 +0200 We now have fewer requirements to build QtWebKit '(#1149).' commit e62069ff23ac8d553f893f74a16b5d45ec790e9c Author: Alan Garny '' Date: Fri Oct 20 17:59:28 2017 +0200 QtWebKit: new QtWebKit binaries for Linux testing '(#1149).' commit a849f8ede962e2ea731e6c42b3451163c8ce2d42 Author: Alan Garny '' Date: Fri Oct 20 17:34:21 2017 +0200 QtWebKit: can now build and use QtWebKit on macOS '(#1149).' commit 0f4d97b70a2f2db14d4ec99e752bc0853e54b9be Author: Alan Garny '' Date: Fri Oct 20 16:53:21 2017 +0200 Some minor cleaning up. commit a4508ca6642f12ae39525ba862f06c75940253ef Author: Alan Garny '' Date: Fri Oct 20 16:25:13 2017 +0200 QtWebKit package: new macOS package '(#1149).' commit 1f47d4a750ec316c3bda745d1a59d4c266bcb5c6 Author: Alan Garny '' Date: Fri Oct 20 16:16:24 2017 +0200 QtWebKit package: new macOS package '(#1149).' We now deploy the JPEG and PNG libraries along with our QtWebKit package on macOS. commit 576e3354e4a91711a358cdca2a357d0b78a4d17b Author: Alan Garny '' Date: Fri Oct 20 15:18:53 2017 +0200 Some minor cleaning up. commit cd448805d09d8b7f2e49afdc8830bd23ec469f6a Author: Alan Garny '' Date: Fri Oct 20 14:49:36 2017 +0200 QtWebKit package: new macOS package '(#1149).' commit 6ad94ed5dcf36b6a00607bf183cf63f9f8d57ac2 Author: Alan Garny '' Date: Fri Oct 20 14:41:02 2017 +0200 QtWebKit package: fixed the RPATH value on macOS '(#1149).' commit 2e3532c8997c9697695d7c93a3cd41af87b73f35 Author: Alan Garny '' Date: Fri Oct 20 13:49:32 2017 +0200 QtWebKit package: some cleaning up with regards to our Linux build '(#1149).' It $'doesn\342\200\231t' seem $'\342\200\230right\342\200\231' to have to patch the libraries to have the RPATH properly set. So, will have to find a way to get things done $'\342\200\230right\342\200\231.' commit fd1599bf2467ea420008e015614b38b1ba7d3138 Author: Alan Garny '' Date: Fri Oct 20 13:25:57 2017 +0200 Some minor cleaning up. commit 39bed4ecee32427db499b37ac52151e51793cf65 Author: Alan Garny '' Date: Fri Oct 20 13:25:28 2017 +0200 Take advantage of ccache, if available, when building our external projects. commit 56b797637d279e0afa009c05b21079a570294df2 Author: Alan Garny '' Date: Fri Oct 20 13:14:32 2017 +0200 Take advantage of ccache, if available, when building our external projects. commit ead7ca7dfe4837a6bafd6e77fdd0c4901f28bf22 Merge: d1e4dec08 c7ea57847 Author: Alan Garny '' Date: Fri Oct 20 10:54:25 2017 +0200 Merge branch ''\''master'\''' into issue1149. commit c7ea5784797b1fc67966e5601c2e382aa16f9c62 Merge: 5db817c31 a14ab4e4a Author: Alan Garny '' Date: Fri Oct 20 10:44:45 2017 +0200 Plugins dialog: made the value of the different fields selectable '(closes' '#1444).' commit a14ab4e4a83a75316dae8ab31bbb0b55bff28446 Author: Alan Garny '' Date: Fri Oct 20 09:49:46 2017 +0200 Slight updates to our downloads and what is new pages '(#1444).' commit 4836031e58066a3212ffaf5e72cee5806d503168 Author: Alan Garny '' Date: Fri Oct 20 09:44:07 2017 +0200 Plugins dialog: make the value of all our fields selectable '(#1444).' commit d1e4dec088524b19743916386dea58e3166aa4d3 Author: Alan Garny '' Date: Thu Oct 19 20:31:07 2017 +0200 Make sure that the RPATH value is properly set on Linux '(#1149).' Note: in '`cmake/common.cmake`,' we redirect the output of '`strip' '-x`' since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some $'\342\200\230problems\342\200\231' with '`strip' '-x`' afterwards, hence we actually '`strip' '-x`' before setting the RPATH value... commit 1267f1e418522d183ef871e366caeb3c0d7c6b94 Author: Alan Garny '' Date: Thu Oct 19 20:23:24 2017 +0200 Make sure that the RPATH value is properly set on Linux '(#1149).' Note: in '`cmake/common.cmake`,' we redirect the output of '`strip' '-x`' since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some $'\342\200\230problems\342\200\231' with '`strip' '-x`' afterwards, hence we actually '`strip' '-x`' before setting the RPATH value... commit 88c07b8013627a1684a8caf8ba052dcda7027d14 Author: Alan Garny '' Date: Thu Oct 19 20:18:13 2017 +0200 Make sure that the RPATH value is properly set on Linux '(#1149).' Note: in '`cmake/common.cmake`,' we redirect the output of '`strip' '-x`' since otherwise it will generate a warning on Linux when building QtWebKit. Indeed, just before its RPATH value will have been set and that seems to be causing some $'\342\200\230problems\342\200\231' with '`strip' '-x`' afterwards, hence we actually '`strip' '-x`' before setting the RPATH $'value\342\200\246' commit fadc54e5cf81b64ae8ec6256b19fbb10a9c1160b Author: Alan Garny '' Date: Thu Oct 19 19:55:30 2017 +0200 Some minor cleaning up. commit 78dbbec93940adee979185ecc8ffd0e9a8881941 Author: Alan Garny '' Date: Thu Oct 19 19:07:53 2017 +0200 Make sure that the RPATH value is properly set on Linux '(#1149).' commit 564eb546799b25e7f790cb64228f26af9441a13c Author: Alan Garny '' Date: Thu Oct 19 18:20:12 2017 +0200 Make sure that we can deploy QtWebKit on Linux '(#1149).' commit da70cb8c931bfb0b55ae1901294a4ab45b694843 Author: Alan Garny '' Date: Thu Oct 19 18:06:35 2017 +0200 QtWebKit: can now build QtWebKit on Linux '(#1149).' commit 04d73d42d0357d2c67846ecaf1bdb045b76b569e Author: Alan Garny '' Date: Thu Oct 19 18:01:16 2017 +0200 Some minor cleaning up '(#1149).' commit e147ae844755b445482d37db1e1cd74a3f947d0a Author: Alan Garny '' Date: Thu Oct 19 17:48:06 2017 +0200 QtWebKit: can now build QtWebKit on Linux '(#1149).' commit b7f637aba3d516ee735a006a8e05e9d63fbbb145 Author: Alan Garny '' Date: Thu Oct 19 16:42:51 2017 +0200 QtWebKit: can now build QtWebKit on Linux '(#1149).' commit a89588f80e18564ed95a4a5b7fcc7c3c76d8fcee Author: Alan Garny '' Date: Thu Oct 19 16:40:51 2017 +0200 CMake: require at least CMake 3.3 for our 'CREATE_PACKAGE_FILE()' macro since this is what we are also requiring for OpenCOR itself. commit 0b78fb1915df8355d503e9d26600bbe679bc7e05 Author: Alan Garny '' Date: Thu Oct 19 16:40:13 2017 +0200 QtWebKit: can now build QtWebKit on Linux '(#1149).' commit 265ba030393b57bfaa66fe32ec3ced37f95dad1e Author: Alan Garny '' Date: Thu Oct 19 14:42:57 2017 +0200 QtWebKit: can now build QtWebKit on macOS '(#1149).' commit 7a957d0478bcd03ab1aae31b29a7cda7723e8a9f Merge: 3ea98c8ea 5db817c31 Author: Alan Garny '' Date: Thu Oct 19 14:36:42 2017 +0200 Merge branch ''\''master'\''' into issue1149. commit 5db817c311727f0357a5c0dbf6ad1ec878471c0e Merge: 3e882e80f b516151e7 Author: Alan Garny '' Date: Thu Oct 19 14:17:23 2017 +0200 CMake: removed from our ADD_PLUGIN '()' macro the arguments that we 'don'\''t' use anymore. commit 3ea98c8ea4345b799956feb2ad66ce369f517db4 Author: Alan Garny '' Date: Thu Oct 19 13:21:23 2017 +0200 Some minor cleaning up. commit b516151e76cb6409409c7a6af58173ed8d61a1f7 Author: Alan Garny '' Date: Thu Oct 19 11:57:38 2017 +0200 BioSignalML API: added some global CMake variables. To be consistent with what we have done for our other packages. commit 6847f5e2ae59ceca7aa0e40538eadf10db3b683c Author: Alan Garny '' Date: Thu Oct 19 11:16:33 2017 +0200 CMake: removed from our ADD_PLUGIN '()' macro the arguments that we 'don'\''t' use anymore. commit 6340fb0c45f0b32403920e7b8701a3d366e9cc3e Author: Alan Garny '' Date: Thu Oct 19 11:16:00 2017 +0200 Revert '"CMake:' removed from our ADD_PLUGIN '()' macro the arguments that we 'don'\''t' use 'anymore."' This reverts commit c950c1aef3f47748b8fd433a7519824231ccc6d6. commit c950c1aef3f47748b8fd433a7519824231ccc6d6 Author: Alan Garny '' Date: Thu Oct 19 09:37:42 2017 +0200 CMake: removed from our ADD_PLUGIN '()' macro the arguments that we 'don'\''t' use anymore. commit 3fc06b76e0e25d886bcf22b34d403b30e0a3f4cb Merge: a7efe322c 3e882e80f Author: David Brooks '' Date: Thu Oct 19 08:00:42 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit ff2a93f7abea4b11383b4152ca6a3534295be775 Author: Alan Garny '' Date: Wed Oct 18 17:05:15 2017 +0200 QtWebKit: updated our requirements for Linux and macOS '(#1149).' We already need that package to build OpenCOR itself, so no need to specify it here. commit b2fca0c954c5bef05b9c5977878a6fcde6e7e750 Merge: ef4a253b8 3e882e80f Author: Alan Garny '' Date: Wed Oct 18 17:03:43 2017 +0200 Merge branch ''\''master'\''' into issue1149. commit 3e882e80f45cd2e3ccb79481be3830500f56a318 Author: Alan Garny '' Date: Wed Oct 18 17:02:46 2017 +0200 Disable Zinc since we are not currently making use of it. ... and thus make our various packages somewhat smaller... commit ef4a253b8496a42952abc9611a149930d210a97d Author: Alan Garny '' Date: Wed Oct 18 16:43:20 2017 +0200 QtWebKit: update our requirements for Linux and macOS '(#1149).' commit 46cb7860c92b168a7cdd7c571b8edff089ae53d2 Merge: 6fab61b21 83f2ddaf8 Author: Alan Garny '' Date: Wed Oct 18 12:54:24 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit 83f2ddaf891f2adf2d1431f4457a4b777558186a Merge: b8a70ebde dd40f3aae Author: Alan Garny '' Date: Wed Oct 18 12:51:34 2017 +0200 Qt: upgraded to Qt 5.9.2 LTS '(#1311).' commit dd40f3aae3c45e1ceb5a1bc0ebb3f3466e3a3bf8 Author: Alan Garny '' Date: Wed Oct 18 10:51:06 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use '(#1311).' commit dc135440db7a55f221a67281de8dad58a0809cf4 Author: Alan Garny '' Date: Wed Oct 18 07:17:57 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use '(#1311).' commit b25dfd458b7c366ef0c6faf6ad3eb250ae50fb96 Author: Alan Garny '' Date: Wed Oct 18 07:09:41 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use '(#1311).' commit a7e37e0133e913c94b54c070ee2003d86e466242 Author: Alan Garny '' Date: Wed Oct 18 00:01:47 2017 +0200 Travis CI: updated the Qt 5.9.2 formula we use '(#1311).' commit 633f78840a83143efb441cf90cb1f1242b1eac75 Author: Alan Garny '' Date: Tue Oct 17 19:19:05 2017 +0200 Get our sample plugins to build and update their documentation '(#1311).' commit b68193dec8ef9fe45f9f06ed9984de822f884a59 Author: Alan Garny '' Date: Tue Oct 17 18:12:16 2017 +0200 Slight update to our downloads page '(#1311).' commit be1f4b80d5739dee7caeaf8e1f803582ca8d8838 Author: Alan Garny '' Date: Tue Oct 17 18:11:58 2017 +0200 Travis CI: use Qt 5.9.1 on Linux since the 5.9.2 PPA is not yet available '(#1311).' commit 77e928a84eb6c1f047b8659b6f42b08e48f223d2 Author: Alan Garny '' Date: Tue Oct 17 17:42:32 2017 +0200 Travis CI: use Qt 5.9.1 on Linux since the 5.9.2 PPA is not yet available '(#1311).' commit 89f26ef50ff486271b76e9f88c7ea43e6f230374 Author: Alan Garny '' Date: Tue Oct 17 17:31:17 2017 +0200 Some minor cleaning up. commit 110fd5fd5f23ecc76ef4c10f756fa4c8f6d36edd Author: Alan Garny '' Date: Tue Oct 17 17:24:14 2017 +0200 Tab bar widget: make sure that the selected tab text is not bright when OpenCOR is not active '(#1311).' commit a8aadc466eb5be1895b638f03bbf4656b0ea0c51 Author: Alan Garny '' Date: Tue Oct 17 16:55:55 2017 +0200 Tab bar widget: have 'TabBarStyle::drawControl()' use a bright colour for the selected tab text '(#1311).' commit d2238b34cb6279f8fa3153a23e0c6d040aff6a93 Author: Alan Garny '' Date: Tue Oct 17 16:37:33 2017 +0200 Tab bar widget: no need to reference our proxy style since 'it'\''s' 'us!' '(#1311)' commit 48d61e02afa54f81e1b0d32559288fc3a2b3e8dd Author: Alan Garny '' Date: Tue Oct 17 16:33:55 2017 +0200 Tab bar widget: account for an icon in 'TabBarWidget::tabSizeHint()' '(#1311).' commit 6d40827e5be180dfa537277496a16df9746c3429 Author: Alan Garny '' Date: Tue Oct 17 16:17:40 2017 +0200 Tab bar widget: move the icon/text closer to the close icon, if any '(#1311).' Note: in 'TabBarWidget::tabSizeHint(),' and unlike in 'TabBarStyle::tabLayout(),' we $'don\342\200\231t' distinguish between the close icon being in the left or right side of the tab, but this should be fine since we are only customising the styling on $'macOS\342\200\246' commit 9e01286ae648f3f7ec7b905e7b93d3416ccac383 Author: Alan Garny '' Date: Tue Oct 17 15:56:13 2017 +0200 Tab bar widget: slight update to our 'TabBarStyle::subElementRect()' method '(#1311).' commit c80975c6afafe90999f9842fe9f4e99d540f630c Author: Alan Garny '' Date: Tue Oct 17 15:50:23 2017 +0200 Some minor cleaning up '(#1311).' commit 860f0ab9aea47e52d1ad654d0848d43aa52b1181 Author: Alan Garny '' Date: Tue Oct 17 14:55:18 2017 +0200 Tab bar widget: no need to call 'subElementRect()' since it does the same as our 'tabLayout()' method, which we call just before '(#1311).' commit 9e212483a0ff5b9e23883cdd5458057c4ca1564d Author: Alan Garny '' Date: Tue Oct 17 14:20:41 2017 +0200 Tab bar widget: shift our text closer to the close button '(#1311).' commit d0ec923ddee1fb2bb8b48c26dff31d9d64b35ebf Author: Alan Garny '' Date: Tue Oct 17 12:42:13 2017 +0200 Tab bar widget: use our own style on macOS '(#1311).' For now, we just copied/pasted the contents of some Qt methods. We now need to $'\342\200\230fix\342\200\231' $'them\342\200\246' commit 7877bcdd8a099d4648f3f7f9d27f1a9b0a958769 Author: Alan Garny '' Date: Tue Oct 17 11:36:11 2017 +0200 Tab bar widget: use our own style on macOS '(#1311).' For now, we just copied/pasted the contents of some Qt methods. We now need to $'\342\200\230fix\342\200\231' $'them\342\200\246' commit 4c3871b9d03086ae49124480a868210588315c9d Author: Alan Garny '' Date: Tue Oct 17 11:24:05 2017 +0200 Tab bar widget: use our own style on macOS '(#1311).' For now, we just copied/pasted the contents of some Qt methods. We now need to $'\342\200\230fix\342\200\231' $'them\342\200\246' commit b630b926b2668e404c52413c814f0be9f71abe77 Merge: b04a8b904 b8a70ebde Author: Alan Garny '' Date: Tue Oct 17 11:10:16 2017 +0200 Merge remote-tracking branch ''\''opencor/master'\''' into issue1311. commit b8a70ebdec570cdec9229ffb271f1945ad43d0b8 Author: Alan Garny '' Date: Tue Oct 17 11:09:41 2017 +0200 Slight update to our prerequisites page '[ci' 'skip].' commit b04a8b904ae55a105ade3e0def8277bb10e47293 Author: Alan Garny '' Date: Tue Oct 17 10:42:39 2017 +0200 Tab bar widget: use our own style on macOS '(#1311).' For now, we just copied/pasted the contents of some Qt methods. We now need to $'\342\200\230fix\342\200\231' $'them\342\200\246' commit dd23fa515e17ab22a8ae140e75ea33c4b2193a68 Author: Alan Garny '' Date: Mon Oct 16 16:11:47 2017 +0200 Some minor cleaning up. commit 31898a39502206c5dfdce4ad08bf367f56fea574 Author: Alan Garny '' Date: Mon Oct 16 10:52:56 2017 +0200 Some minor cleaning up regarding our Edit menu '(#1311).' This indirectly addresses an issue with menu separators on Linux. commit 44b39602e146c909af3429ab56dd5d9b9f132d99 Author: Alan Garny '' Date: Mon Oct 16 10:24:26 2017 +0200 Main window: handle our menu separators so they get properly hidden on Linux '(#1311).' commit fdcd0d46fe5b4a8b34517ddf4d33fe6fd9c05f49 Author: Alan Garny '' Date: Mon Oct 16 10:19:41 2017 +0200 Some minor cleaning up with regards to menu actions to be added to OpenCOR '(#1311).' commit 0df24e36da8d04c1c13f9222cb5d30c04d32e050 Author: Alan Garny '' Date: Mon Oct 16 10:13:01 2017 +0200 SEDMLEditing view: handle our menu separators so they get properly hidden on Linux '(#1311).' commit a55e9cce224a7280bec6b2ed713efff455d09c29 Author: Alan Garny '' Date: Mon Oct 16 10:06:27 2017 +0200 CellMLEditing view: handle our menu separators so they get properly hidden on Linux '(#1311).' commit 73dcc01b73e6e1b891870e0fab801275fdd5f534 Author: Alan Garny '' Date: Sun Oct 15 18:47:10 2017 +0200 Some minor cleaning up. commit 853b42364865e2b4cd79c0bd1e8814c6b5299f87 Author: Alan Garny '' Date: Sun Oct 15 17:12:00 2017 +0200 Revert '"Removed' the non-existing code for exporting a CellML 1.0 file to CellML '1.1."' This reverts commit 4c7ecb6ce60aa0764554bc39194fa546c486b322. commit bc0f7d4c72c4c553f2ed432866aec84773e1da81 Author: Alan Garny '' Date: Sun Oct 15 17:11:51 2017 +0200 Revert '"Removed' the non-existing code for exporting a CellML 1.0 file to CellML '1.1."' This reverts commit 10392dc2b22d894f98efef1e8dc4121e8c3013dc. commit 10392dc2b22d894f98efef1e8dc4121e8c3013dc Author: Alan Garny '' Date: Sun Oct 15 17:00:03 2017 +0200 Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1. commit 4c7ecb6ce60aa0764554bc39194fa546c486b322 Author: Alan Garny '' Date: Sun Oct 15 16:56:50 2017 +0200 Removed the non-existing code for exporting a CellML 1.0 file to CellML 1.1. commit 2a80c8a82431cd850c677339e4baf25931191680 Author: Alan Garny '' Date: Sun Oct 15 11:36:10 2017 +0200 Travis CI: upgrade to Qt 5.9.2 LTS on macOS '(#1311).' commit f14b8c67c13b62d7307c977915e075378a3c5170 Author: Alan Garny '' Date: Sun Oct 15 11:15:04 2017 +0200 Travis CI: upgrade to Qt 5.9.2 LTS '(#1311).' Note: the PPA is not yet ready, but hopefully it will be by the time we are ready to PR. Worst case scenario, we could use the Qt 5.9.1 PPA. commit 678fb6a63a9ee42dd34d1256c863736f3a7473c6 Author: Alan Garny '' Date: Sat Oct 14 21:14:14 2017 +0200 Some minor cleaning up. commit f8855d6b4d5c74ad0433076b167daf8143f4d924 Author: Alan Garny '' Date: Sat Oct 14 20:44:25 2017 +0200 Some minor cleaning up. commit 8fcaf23164ba1f56c846a347e7f8ba66e50d77ff Author: Alan Garny '' Date: Sat Oct 14 17:37:10 2017 +0200 Improved the populating of our '`Tools`' menu '(#1311).' commit 39c43d953ff2da5a423b0bb8d9a0fbb602310400 Author: Alan Garny '' Date: Sat Oct 14 16:41:11 2017 +0200 Make sure that we are using Qt 5.9.x LTS and later '(#1311).' commit b246ecf18791095d76353b4c393855be1cecc679 Author: Alan Garny '' Date: Sat Oct 14 15:38:48 2017 +0200 StyledItemDelegate: use a slightly smaller height on Windows and macOS, if an item has an icon '(#1311).' commit 496bc693e0d22cc7f2df563ffe49ea6c30e6b2cc Author: Alan Garny '' Date: Sat Oct 14 15:31:58 2017 +0200 CellML Annotation view: use our new StyledItemDelegate class '(#1311).' commit 878fe07df38be37f777e0a627bcab3843eabaa0e Author: Alan Garny '' Date: Sat Oct 14 15:27:54 2017 +0200 Data store dialog: use our new StyledItemDelegate class '(#1311).' commit 4a60c2ce603ee4f27628dd00103dd2453133b275 Author: Alan Garny '' Date: Sat Oct 14 15:24:15 2017 +0200 Plugins and preferences dialogs: use our new StyledItemDelegate class '(#1311).' commit 149006390413ff6cc96195b149bced4f61bd4093 Author: Alan Garny '' Date: Sat Oct 14 15:18:41 2017 +0200 Some minor cleaning up. commit ad573e71918616022338ec3410114b57f4440a0f Author: Alan Garny '' Date: Sat Oct 14 15:16:08 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon '(#1311).' commit 8921b1a4f0b9c293498914f4b5209c3583473e27 Author: Alan Garny '' Date: Sat Oct 14 14:53:56 2017 +0200 Some minor cleaning up. commit 9982bd4081b60e5425c7c0c9ea374e2ce0dfa858 Author: Alan Garny '' Date: Sat Oct 14 14:39:03 2017 +0200 Some minor cleaning up. commit 002c94233dc48f8854adfc6d69686b96748ee819 Merge: e6949c6de 25e37e278 Author: Alan Garny '' Date: Sat Oct 14 10:22:00 2017 +0200 Merge branch ''\''master'\''' into issue1311 commit 6fab61b215710e61128db94d880d1eae2ddaf96b Merge: c12e70d46 25e37e278 Author: Alan Garny '' Date: Sat Oct 14 10:20:59 2017 +0200 Merge branch ''\''master'\''' into issue1426 commit 25e37e278a2e2dc363fd72c6dd99e05e327484d4 Author: Alan Garny '' Date: Sat Oct 14 10:18:57 2017 +0200 Use the 64-bit version of the 64-bit compiler on Windows '[ci' 'skip].' Indeed, we used to use the 32-bit version in case we were running a 32-bit version of Windows, but by now everybody should be using a 64-bit version, so we may as well take advantage of the slightly more efficient 64-bit version of the 64-bit compiler. commit e6949c6de92e8e1c775f6deb3ee717afc9b0a60c Author: Alan Garny '' Date: Thu Oct 12 17:13:20 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon '(#1311).' commit dbc44ea444ca12e988a392204666892726942ce0 Author: Alan Garny '' Date: Thu Oct 12 17:12:46 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon '(#1311).' commit 4e943052bf2695915c87596faf5a3dc68abf38ee Author: Alan Garny '' Date: Thu Oct 12 10:22:46 2017 +0200 Some minor cleaning up. commit 1b97d4f85cf1ff99ca1fabde91cfd45cfee571cb Author: Alan Garny '' Date: Thu Oct 12 09:36:56 2017 +0200 Some minor cleaning up. commit 9e988a7667e0624db4892d781ad2cb331f5895fe Author: Alan Garny '' Date: Wed Oct 11 11:32:16 2017 +0200 TreeViewWidget and PropertyEditorWidget: use slightly smaller height if an item has an icon '(#1311).' commit 17c30fab5d3fe676ff20dce9748bb271dc3975c8 Merge: 05d72e54f 3679a87ba Author: Alan Garny '' Date: Wed Oct 11 07:12:57 2017 +0200 Merge branch ''\''master'\''' into issue1311. commit c12e70d46b43b0fc71ec216e7caae59893a17a45 Author: Alan Garny '' Date: Wed Oct 11 07:12:35 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit 3679a87baf900413bb83daac164a547e6248a8f2 Merge: fd9310c19 4e75536f7 Author: Alan Garny '' Date: Wed Oct 11 07:08:17 2017 +0200 Slight update to our downloads and what is new pages. commit 4e75536f7ed6246e87b103a6670e568f6926fa14 Author: Alan Garny '' Date: Tue Oct 10 23:23:06 2017 +0200 Slight update to our downloads and what is new pages. commit 05d72e54f9143fb91f3a9ef0616064bb7895efe7 Merge: 3927604bc fd9310c19 Author: Alan Garny '' Date: Tue Oct 10 23:16:36 2017 +0200 Merge branch ''\''master'\''' into issue1311. commit e8d0820ce826dd8be19af5b940fa6bb2e53d8e89 Merge: 9f306ef1b fd9310c19 Author: Alan Garny '' Date: Tue Oct 10 23:16:06 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit fd9310c19469c97841ca78ff49258ad33d0f3fef Author: Alan Garny '' Date: Tue Oct 10 23:15:02 2017 +0200 PMR window: really retrieve the exposures only when needed. Indeed, when initialising ourselves or changing our PMR 'support'\''s' preferences, then we were retrieving our exposures, independent of whether we were visible or not while we only want to do that when we are visible, so as not to waste internet resources and potentially hanging up ourselves for no good reason. commit 3927604bc01f102fe57019b2c3fc974656873172 Author: Alan Garny '' Date: Tue Oct 10 07:41:59 2017 +0200 'Don'\''t' build QtWebKit anymore '(#1311).' commit 56faa1808d35dd32074893a6ddd9004a288413b5 Author: Alan Garny '' Date: Tue Oct 10 07:41:19 2017 +0200 Generated binaries for QtWebKit 5.9.2 '(#1311).' commit 51c2523e56329d6ab288105162c5af402d19c975 Author: Alan Garny '' Date: Mon Oct 9 23:10:39 2017 +0200 Getting ready to build QtWebKit '(#1311).' commit a7efe322ce3f187fa06363781db9e0a60953d645 Author: David Brooks '' Date: Tue Oct 10 10:04:10 2017 +1300 Python: work on documentation. commit ff3724f4f17172c9a8811949f89ba558cd9cbca6 Merge: 8f837c888 8dbfaad15 Author: David Brooks '' Date: Mon Oct 9 12:31:02 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 8f837c888ef8633ed80acaba176154ed7950c3d9 Author: David Brooks '' Date: Mon Oct 9 12:19:17 2017 +1300 Python: 'don'\''t' open remote files twice... commit c1cba86073894ef6d1e137aaa4e46a0185965ba5 Author: Alan Garny '' Date: Sun Oct 8 13:50:59 2017 +0200 'Don'\''t' build QtWebKit anymore '(#1311).' commit 157ad2bbeedad23aec83b74c5fc29515203519b4 Author: Alan Garny '' Date: Sat Oct 7 20:21:48 2017 +0200 Generated binaries for QtWebKit 5.9.2 '(#1311).' commit 7d7920ec19465f951577442abc04e2947e5f82ef Author: Alan Garny '' Date: Sat Oct 7 19:22:57 2017 +0200 Slight updates to our QtWebKit readme file '(#1311).' commit d37d18564a8d34f49a074d510114d3e6b637eb0f Merge: 609754a6a 8dbfaad15 Author: Alan Garny '' Date: Sat Oct 7 14:57:22 2017 +0200 Merge branch ''\''master'\''' into issue1311. commit 9f306ef1bad1bc5ad629ce862067c95250b4d8a6 Merge: c8efb8757 8dbfaad15 Author: Alan Garny '' Date: Sat Oct 7 14:56:38 2017 +0200 Merge branch ''\''master'\''' into issue1426. commit 8dbfaad1581c7972ca48b83a4530fd1f2e67a94f Author: Alan Garny '' Date: Sat Oct 7 14:55:24 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 609754a6a8ff9ac7171b87b2d383e9424b6f2f11 Author: Alan Garny '' Date: Sat Oct 7 12:57:53 2017 +0200 Slight update to our QtWebKit readme file '(#1311).' commit 4e408768100af42c0a55202f0e9700ad47f2cf26 Author: Alan Garny '' Date: Sat Oct 7 10:56:53 2017 +0200 Getting ready to build QtWebKit '(#1311).' commit ad522169b2f2031d52b6852e2d45123987a2626c Author: Alan Garny '' Date: Sat Oct 7 10:56:19 2017 +0200 Removed our dependency on Lucene '(#1311).' commit 2cd895a4ecfc3d2dab78428cd4386defdc55b2fa Author: Alan Garny '' Date: Sat Oct 7 10:55:24 2017 +0200 QtWebKit: now rely on our 5.9.2 version of that library '(#1311).' commit 9b91029eb30de920cec965fb6f0757999f19c7bc Author: Alan Garny '' Date: Sat Oct 7 10:54:02 2017 +0200 Slight update to our prerequisites page '(#1311).' commit c8efb875794436e416c261a2751b3c8fbdae080d Author: Alan Garny '' Date: Fri Oct 6 10:49:40 2017 +0200 SimulationExperiment view: renamed our '"Graphs"' panel to '"Graph' 'Panel"' '(#1426).' commit 3e8f46aab83f850a61be0ceef684fcd56feb9f32 Merge: 9db6759fc 8333d06d7 Author: Alan Garny '' Date: Fri Oct 6 10:13:10 2017 +0200 New snapshot. commit 32a9ae9a33ed72fced6f83724b85c5bea8658288 Author: David Brooks '' Date: Fri Oct 6 10:48:48 2017 +1300 Python: cleaning up. commit 6eca515eab73c9db237259d6c8c3b240acbc843c Merge: b4ea9598e 9db6759fc Author: David Brooks '' Date: Fri Oct 6 08:28:36 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 8333d06d7565ccfe1e90aeb480f983646efe437c Author: Alan Garny '' Date: Thu Oct 5 18:54:38 2017 +0200 New snapshot. commit 9db6759fc3e4fec9d201f7fdc99c845baf81be14 Merge: a8ee8f749 5775c8928 Author: Alan Garny '' Date: Thu Oct 5 18:52:59 2017 +0200 Greatly improved our support for log scales '(closes' '#1412).' commit 5775c89288989d7e2b15c0bf438a0bf642347f01 Author: Alan Garny '' Date: Thu Oct 5 17:50:33 2017 +0200 GraphPanel widget: fixed a stupid mistake '(#1412).' commit 00694d9f7170243c807a4d79c3385b28d2941880 Author: Alan Garny '' Date: Thu Oct 5 17:22:49 2017 +0200 Corrected the version of OS X / macOS we now support. commit 98f2877d617314dcfd87be1fc53f7157eab2f76e Author: Alan Garny '' Date: Thu Oct 5 17:21:10 2017 +0200 Reverted our ''\''New' 'snapshot'\''' '(#1412).' commit a2325e418b10ac0c0780de08dacb0d51070ffff9 Author: Alan Garny '' Date: Thu Oct 5 17:00:16 2017 +0200 Added or improved some SED-ML test files '(#1412).' commit 4fb9a51bfb993f21d1758d9f6aef6ede49f7a16e Author: Alan Garny '' Date: Thu Oct 5 16:30:20 2017 +0200 Some minor cleaning up. commit a8ee8f7493d70fc935025335aee3767ae942eaf2 Merge: f5bb1c014 8d1829415 Author: Alan Garny '' Date: Thu Oct 5 15:47:12 2017 +0200 New snapshot. commit 8d18294159b55e001627aebe4281d1e79fe3718f Author: Alan Garny '' Date: Thu Oct 5 14:44:00 2017 +0200 New snapshot. commit f5bb1c0148353af1180ad4215bb6453cb9b98ba5 Merge: cc6b31b72 0d63327cf Author: Alan Garny '' Date: Thu Oct 5 14:36:30 2017 +0200 Greatly improved our support for log scales '(closes' '#1412).' commit 0d63327cf1cc5f178debfb5f51fb1efad92fb390 Merge: 39ca75212 cc6b31b72 Author: Alan Garny '' Date: Thu Oct 5 13:42:45 2017 +0200 Merge branch ''\''master'\''' into issue1412. commit cc6b31b72b445cb98a4320984856ee7178bc19b7 Merge: be20677f9 2d6c49113 Author: Alan Garny '' Date: Thu Oct 5 13:34:33 2017 +0200 Some minor cleaning up and refactoring. commit 39ca75212867d084fe0b6bc5d89cddc576faeb40 Author: Alan Garny '' Date: Thu Oct 5 11:33:47 2017 +0200 Some minor cleaning up. commit 2d6c49113d1ef3368a7f5bc2d4287b9edeb45e34 Author: Alan Garny '' Date: Thu Oct 5 11:32:15 2017 +0200 Some minor cleaning up. commit 7490fbae1b077d9275a8527802f33d9360afc392 Author: Alan Garny '' Date: Thu Oct 5 11:29:47 2017 +0200 Some minor refactoring and cleaning up. commit 0e8103dfbadb2abf7e936b9eb60b642c3a464e18 Author: Alan Garny '' Date: Thu Oct 5 11:25:33 2017 +0200 Some minor cleaning up. commit 1d058f8c5990557a121a1673323a441269268b69 Author: Alan Garny '' Date: Thu Oct 5 11:22:14 2017 +0200 Slight update to our downloads page '(#1412).' commit 3d25a1b646320388f39e982da915af57146bff51 Author: Alan Garny '' Date: Thu Oct 5 11:13:47 2017 +0200 Added some test SED-ML files for testing our linear/log axes '(#1412).' commit bc79d08fbfe2902c9233b91f30b115e5bd1acace Author: Alan Garny '' Date: Thu Oct 5 10:48:46 2017 +0200 GraphPanel widget: improved 'GraphPanelPlotWidget::dataLogRect()' '(#1412).' commit b4ea9598e63e784f980db2d639bbdb4f45bf78ed Author: David Brooks '' Date: Thu Oct 5 17:48:11 2017 +1300 Python: update '`PythonPackages`' for WIndows and Linux. commit 85afd705936f8c2d739e06bdc7c98caaede964fb Author: David Brooks '' Date: Thu Oct 5 16:50:15 2017 +1300 Python: update to IPython 6.2.1 and qtconsole 4.3.1 commit e75b4591cc36540111a428dffd629eb3d0474674 Author: David Brooks '' Date: Thu Oct 5 11:39:18 2017 +1300 Python: turn off output when updating path to Python unless '`--verbose`' given. commit f6d650bcea38c71b91e816d836f2938f7e5304a0 Author: David Brooks '' Date: Thu Oct 5 11:27:58 2017 +1300 Python: remove '`virtualenv`' specific code. commit e5059ac1654ca6de19540ea5b553fa76b6115930 Author: David Brooks '' Date: Thu Oct 5 11:26:48 2017 +1300 Python: add ''\''.'\''' to the head of 'IPython'\''s' search path. commit 9f7429f374e8b30d03e452ef20af593a7b033d40 Author: Alan Garny '' Date: Wed Oct 4 19:11:12 2017 +0200 GraphPanel widget: get 'GraphPanelPlotWidget::dataRect()' and 'GraphPanelPlotWidget::dataLogRect()' to tell us whether they are returning something meaningful '(#1412).' Indeed, the problem was that when running a simulation with a big simulation delay, then the first time we would call 'GraphPanelPlotWidget::dataRect()' or 'GraphPanelPlotWidget::dataLogRect(),' we would end up with 'QRectF(minX,' minY, maxX-minX, 'maxY-minY)' where minX = maxX and minY = maxY, which when tested using 'QRectF::isNull()' would return true while we 'didn'\''t' want that. Although the values result in ''\''null'\'',' they are actually meaningful to us. commit 6e90896e55d20b5e8104d56743982bc7e544e82b Author: Alan Garny '' Date: Wed Oct 4 18:55:21 2017 +0200 GraphPanel widget: get 'GraphPanelPlotWidget::dataRect()' and 'GraphPanelPlotWidget::dataLogRect()' to tell us whether they are returning something meaningful '(#1412).' Indeed, the problem was that when running a simulation with a big simulation delay, then the first time we would call 'GraphPanelPlotWidget::dataRect()' or 'GraphPanelPlotWidget::dataLogRect(),' we would end up with 'QRectF(minX,' minY, maxX-minX, 'maxY-minY)' where minX = maxX and minY = maxY, which when tested using 'QRectF::isNull()' would return true while we 'didn'\''t' want that. Although the values result in ''\''null'\'',' they are actually meaningful to us. commit 5333b33ed35c2057ecb77c59e0c2d8656500392a Author: Alan Garny '' Date: Wed Oct 4 18:23:31 2017 +0200 GraphPanel widget: fixed a small problem with 'GraphPanelPlotGraph::boundingLogRect()' '(#1412).' commit bf66838db7be6a10e7614df5b5c057fbfeee1751 Author: Alan Garny '' Date: Wed Oct 4 17:47:58 2017 +0200 SimulationExperiment view: make sure that our default linear/log axes values are set when clearing a graph panel '(#1412).' commit 07378e8778edd5fbe5d72826d2f31b80fc989c37 Author: Alan Garny '' Date: Wed Oct 4 17:17:27 2017 +0200 GraphPanel widget: updated 'GraphPanelPlotWidget::realDataRect()' '(#1412).' Now, 'GraphPanelPlotWidget::realDataRect()' accounts for the log scales. commit acb5327e4f18eb3eb78c2cf0a52e2f65e44217b0 Author: Alan Garny '' Date: Wed Oct 4 16:10:14 2017 +0200 Some minor cleaning up. commit 80ecd42a786b627524336185922eb09858fc3783 Author: Alan Garny '' Date: Wed Oct 4 15:55:17 2017 +0200 SimulationExperiment view: determine what the VOI axis log range should be like '(#1412).' commit 8dd1a794d47c0da788d7f5af9320a55d81c84967 Author: Alan Garny '' Date: Wed Oct 4 15:52:46 2017 +0200 SimulationExperiment view: determine what the VOI axis log range should be like '(#1412).' commit 3f8a632c063a8d57650b464f2bfd37a9c368b01c Author: Alan Garny '' Date: Wed Oct 4 15:26:40 2017 +0200 Slight reworking of 'SimulationExperimentViewSimulationWidget::simulationPropertyChanged()' '(#1412).' This is so that if the user changes the point interval and that we are using a log scale, then the axes can be updated accordingly, if needed. For example, say that the X axis uses the '[0;' '1000]' range and that we have a point interval of 0.1, then a log scale will result in the X axis actually using the '[0.1;' '1000]' range. commit a26e1c756cb95da1c7b77e95644903f19fb83e43 Author: Alan Garny '' Date: Wed Oct 4 14:49:10 2017 +0200 SimulationExperiment view: make use of the new 'GraphPanelPlotGraph::setData()' method '(#1412).' commit d8de1d47abfe091ae3fe028de18d060d27bfe9a8 Author: Alan Garny '' Date: Wed Oct 4 14:48:21 2017 +0200 GraphPanel widget: added the 'GraphPanelPlotWidget::dataLogRect()' method '(#1412).' commit 006d005f8345d7bd6c775571de7d16c691f36d8c Author: Alan Garny '' Date: Wed Oct 4 11:52:00 2017 +0200 Some minor cleaning up. commit f589fecf41a533d7180eefd8ff363eee01ebc77a Author: David Brooks '' Date: Wed Oct 4 11:52:34 2017 +1300 Python: 'Windows'\''' package needs to include the SQLite3 import library. commit d6a76266f4baf0023fd16cc66f9a6781fc4eb33a Merge: 39055e33d be20677f9 Author: David Brooks '' Date: Wed Oct 4 09:12:27 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 6d088cd7312924de9210eccdd20b36cd04d7526b Merge: 8a48aa0a6 be20677f9 Author: Alan Garny '' Date: Tue Oct 3 18:32:36 2017 +0200 Merge branch ''\''master'\''' into issue1412. commit be20677f988c52d615944a1bdf6496fc920efa7f Merge: 5c88c9873 fef816054 Author: Alan Garny '' Date: Tue Oct 3 18:31:04 2017 +0200 Addresses issues '#1432' and '#1433' '(closes' '#1432)' '(closes' '#1433).' commit fef816054a0fa61ce507f87b1f09314fdaa4942d Author: Alan Garny '' Date: Tue Oct 3 17:45:02 2017 +0200 Some minor cleaning up '(#1432' and '#1433).' commit f02604f38b0282ebcdcd94e9b5f1a920bcf1a49f Author: Alan Garny '' Date: Tue Oct 3 17:19:34 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries on Windows '(#1432' and '#1433).' commit 0a1389ce1135d07abb9885a3a23e905ad705339b Author: Alan Garny '' Date: Tue Oct 3 16:48:05 2017 +0200 Some minor cleaning up '(#1432' and '#1433).' commit de66e9ce92b97032cf6a553502a3d9b031dca9df Author: Alan Garny '' Date: Tue Oct 3 16:47:48 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries on Linux and macOS '(#1432' and '#1433).' commit 7df80787c92421bce2687c0aef33463fc2d3f8be Author: Alan Garny '' Date: Tue Oct 3 16:36:59 2017 +0200 Getting ready to build libSBM, libNuML and libSEDML '(#1432' and '#1433).' commit eaa6e6b4ca58495199174635a93e7e645c4d84f3 Author: Alan Garny '' Date: Tue Oct 3 16:06:38 2017 +0200 Slight updates to our downloads and what is new pages '(#1432' and '#1433).' commit ad205fa69cccd7b4c7c5ec8731e271bf025fb263 Author: Alan Garny '' Date: Tue Oct 3 15:42:22 2017 +0200 libNuML package: fixed a small problem with the value of PACKAGE_REPOSITORY '(#1432' and '#1433).' commit 4c4c02f8fda98995ce85c65706b5eba1747cc3b5 Author: Alan Garny '' Date: Tue Oct 3 15:41:37 2017 +0200 Some minor cleaning up. commit 2ff3200d8a0a96bbd2c12ad7acfd270c8f01b618 Author: Alan Garny '' Date: Tue Oct 3 15:35:09 2017 +0200 Some minor cleaning up '(#1432' and '#1433).' commit f7cec38fb3a3656d3bf2ede6aba38a5949de2c96 Author: Alan Garny '' Date: Tue Oct 3 15:34:31 2017 +0200 libSBML/libNuML/libSEDML packages: updated our binaries '(#1432' and '#1433).' commit bce27b247ba4cbe97fe53f5425b19c37c70fb5fa Author: Alan Garny '' Date: Tue Oct 3 15:26:40 2017 +0200 libNuML/libSEDML plugins: get their dependencies right '(#1432' and '#1433).' commit 38943ab8bd8016a94d5c68adf6a1923ffd499b9f Author: Alan Garny '' Date: Tue Oct 3 14:47:31 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 '(#1432' and '#1433).' commit 122caf69f0ab490e441796acf4c0a9afb06698f4 Author: Alan Garny '' Date: Tue Oct 3 13:38:46 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 '(#1432' and '#1433).' commit d73c9c0228fa4ded5731b47758d9a8546b484108 Author: Alan Garny '' Date: Tue Oct 3 11:29:09 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 '(#1432' and '#1433).' commit d5255779723b35d0fa0ea0b9eabcfb4261636473 Author: Alan Garny '' Date: Tue Oct 3 11:06:38 2017 +0200 libSEDML package: some work on upgrading to version 0.4.3 '(#1432' and '#1433).' commit 36009544bb1ac3f9db7a611cbb730e605a05ace5 Author: Alan Garny '' Date: Tue Oct 3 10:36:11 2017 +0200 Some minor cleaning up. commit a04902ab9e7442c4adb7f11139de58a1e536870d Author: Alan Garny '' Date: Tue Oct 3 10:27:25 2017 +0200 Getting ready to build libSBML and libSEDML '(#1432).' commit 8a48aa0a63c1c7e9adceeeb27fbffee2c14b0726 Author: Alan Garny '' Date: Mon Oct 2 17:40:51 2017 +0200 Some minor cleaning up. commit e88ef6f10a263643de4d66566ad2741c770a387c Author: Alan Garny '' Date: Mon Oct 2 16:02:20 2017 +0200 GraphPanel widget: simplified the optimisation of axes '(#1412).' We used to optimise an 'axis'\''' values by making sure that they would fall onto a factor of its minor step. This was working fine with linear axes, but this is next to impossible to get to work with log axes. So, now, the only ''\''optimisation'\''' is to handle the case where the minimum and maximum values of an axis are the same. commit 15c28b7e832317a03e8d4d51f35375717d9219c5 Author: Alan Garny '' Date: Mon Oct 2 15:45:00 2017 +0200 SimulationExperiment view: some work on adding log scales support to 'SimulationExperimentViewSimulationWidget::updatePlot()' '(#1412).' commit 997640214c019a12675074c9bc8f84b36fb9cb26 Author: Alan Garny '' Date: Mon Oct 2 15:33:33 2017 +0200 GraphPanel widget: added the 'hasData()' method '(#1412).' commit 39055e33dc85d338b0d9649feec5f31d55682c93 Author: David Brooks '' Date: Sun Oct 1 14:31:59 2017 +1300 Python: update Python script paths in build directory. commit e918d24141635d9ad7807f0d1e7f9a83eb0460c8 Author: David Brooks '' Date: Sun Oct 1 14:30:40 2017 +1300 Python: use a smaller font in IPython window. commit bad477edf9cf9889e98f3471809e022821fc0393 Author: David Brooks '' Date: Sat Sep 30 22:24:50 2017 +1300 Python: add our Python script directory to the system PATH. commit bb310df23311f6c73d5618d38dc0fced036c470f Author: David Brooks '' Date: Sat Sep 30 21:17:25 2017 +1300 Python: tweak command to set path to new Python executable. commit 06f5103715666c926a0b0be130f7945e0331bc46 Merge: e3122e8ea 5c88c9873 Author: David Brooks '' Date: Sat Sep 30 21:14:46 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit e3122e8eaa4df1f11a03bc6a0fb1715e3c7265a5 Author: David Brooks '' Date: Sat Sep 30 21:04:19 2017 +1300 Python: modify scripts to use the newly installed Python under Windows. commit e266bc9aa7e25b5b3afe642ffddc0654c39ce0b3 Author: David Brooks '' Date: Sat Sep 30 19:17:05 2017 +1300 Python: package Python into Windows installer. commit 6b75e3d33597b936bb325bd5d38ba2e27402b61e Author: David Brooks '' Date: Sat Sep 30 19:15:06 2017 +1300 Python: use '`argparse`' and update help text. commit 09c88b5d8e3f23833324b14f13301355832f8ad5 Author: David Brooks '' Date: Sat Sep 30 19:14:28 2017 +1300 Python: allow for spaces in path names. commit c9755f3e7165f405cb76efabdf0b44e4bd4402aa Author: David Brooks '' Date: Sat Sep 30 18:59:59 2017 +1300 Python: install Windows Python package installers as scripts instead of EXEs. commit 3ff7a67ecb01d28d1ba316b75a51ee7b0788081e Author: Alan Garny '' Date: Fri Sep 29 17:33:38 2017 +0200 GraphPanel widget: fixed an old problem with panning. commit 02a9e1865f9ddd32619c12d8317d3398683fd19c Author: Alan Garny '' Date: Fri Sep 29 17:27:57 2017 +0200 Some minor cleaning up. commit fa00edf9aa49c521c8212a5143fd5ecfebb6612d Author: Alan Garny '' Date: Fri Sep 29 15:19:17 2017 +0200 GraphPanel widget: can now nicely zoom in/out linear/log axes '(#1412).' commit a0713d3146023eeb9f60978d8f417509ef3f1240 Author: Alan Garny '' Date: Fri Sep 29 11:52:01 2017 +0200 GraphPanel widget: some minor refactoring '(#1412).' commit dce3daa33f45e911e2f609d3036aaf7ece69d52f Author: Alan Garny '' Date: Fri Sep 29 11:20:11 2017 +0200 Revert '"Some' minor 'improvement."' This reverts commit e211d57ba9d93a52ea81ea85410f922901c43c47. commit e211d57ba9d93a52ea81ea85410f922901c43c47 Author: Alan Garny '' Date: Fri Sep 29 10:47:57 2017 +0200 Some minor improvement. commit 38ff64948f5a9119cc3c0fd89498ad343165c27f Author: Alan Garny '' Date: Fri Sep 29 10:21:40 2017 +0200 Some minor cleaning up. commit 7ba4ec50ebf5dffe55023c39c9a331e37a28924b Author: David Brooks '' Date: Fri Sep 29 17:13:24 2017 +1300 Python: update Python path utility for for Python 3 and Windows and remove activation script processing. commit d0da955888344833d0af34c04b19bb2c7f69f50c Author: David Brooks '' Date: Fri Sep 29 17:10:01 2017 +1300 Python: rename utility to set_python_path.py commit 3de3361829cd553ce84c2b0921547b3ad021a485 Author: David Brooks '' Date: Fri Sep 29 17:05:13 2017 +1300 Python: virtualenv-tools.py as downloaded from https://raw.githubusercontent.com/fireteam/virtualenv-tools/master/virtualenv_tools.py commit fadd64516c34f4de627e5b5d2941d47210ba27ef Author: Alan Garny '' Date: Thu Sep 28 18:27:52 2017 +0200 GraphPanel widget: can now nicely pan linear/log axes '(#1412).' commit 8cf64f4f6ff69f83e162e9fd93dac69b60f647f1 Author: Alan Garny '' Date: Thu Sep 28 16:06:52 2017 +0200 GraphPanel widget: added support for log scales in 'GraphPanelPlotWidget::updateActions()' and 'GraphPanelPlotWidget::checkAxisValues()' '(#1412).' commit 7f7adb17c2831f40a9bd341a1ce20e1aa5c036e1 Author: Alan Garny '' Date: Thu Sep 28 11:42:56 2017 +0200 GraphPanel widget: provide a way to update our default linear/log min/max X/Y 'values(#1412).' commit da3abb6c8ada2223a5ae1892ef83c0688d7f4415 Author: Alan Garny '' Date: Thu Sep 28 11:29:08 2017 +0200 GraphPanel widget: rely on default linear/log min/max X/Y 'values(#1412).' commit 81c586154a80764fa1b29789f7cc876016dcec58 Author: Alan Garny '' Date: Thu Sep 28 11:17:12 2017 +0200 Some minor cleaning up. commit 78028b1f78960328cc52a490cda35ee84f482d95 Merge: d3920a0ef 5c88c9873 Author: Alan Garny '' Date: Thu Sep 28 10:49:42 2017 +0200 Merge branch ''\''master'\''' into issue1412. commit 5c88c9873635b5e4e2117c8421766b4dcf1250ca Author: Alan Garny '' Date: Thu Sep 28 10:47:43 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 95120aad1d5d41ea5ac10c5e5f267a6a9b17c847 Merge: 65e1241db acf12913e Author: Alan Garny '' Date: Thu Sep 28 10:41:18 2017 +0200 Some minor cleaning up and refactoring. commit acf12913e32b890da4ede61788977f44334284b0 Author: Alan Garny '' Date: Thu Sep 28 10:08:52 2017 +0200 Some minor cleaning up. commit bd3fd8204cc5d74e7d711955b85752ba57f8d1f8 Author: Alan Garny '' Date: Thu Sep 28 10:07:50 2017 +0200 Some minor cleaning up. commit 526b8d3678b5efdaaa797ce62347b2ce6070ae7d Author: Alan Garny '' Date: Thu Sep 28 10:07:08 2017 +0200 Some minor cleaning up. commit d3920a0ef341ef6a57c7b831c34c384d6381d92f Author: Alan Garny '' Date: Thu Sep 28 10:04:27 2017 +0200 Some minor cleaning up. commit aa1c3c0f7fb0d0cbb1cb40a51960ccd14d09ae69 Author: Alan Garny '' Date: Thu Sep 28 10:02:07 2017 +0200 Some minor cleaning up. commit b2f3ee1ca5334d6f9d395729defd7248d0ff9684 Author: Alan Garny '' Date: Thu Sep 28 09:41:07 2017 +0200 Some minor refactoring. commit e8f76313d5194800512db76bbb2efbca928f3e0c Author: Alan Garny '' Date: Thu Sep 28 09:40:44 2017 +0200 Some minor cleaning up. commit 3e75cea141347b250b2a6803193878d6a4b9e07b Author: Alan Garny '' Date: Thu Sep 28 09:36:49 2017 +0200 Some minor cleaning up. commit 5abb1add0dadf0b1bc515d41f7c617f63b23d6b4 Author: Alan Garny '' Date: Wed Sep 27 18:38:43 2017 +0200 Reverted commits 7486c95 and c3e5934 '(#1412).' I clearly $'didn\342\200\231t' think it through. The first commit made things quite worse when it comes to running some simulations. By default, the X axis would have a range of '[0;' '1000],' but if the user was to specify a simulation that goes from 0 to 100,000, then the X axis would keep growing as the simulation would be $'run\342\200\246' which would make things unnecessarily slow and not graphically $'pleasant\342\200\246' commit c3e593444561c0b40925e15fda69020e26ac0d11 Author: Alan Garny '' Date: Wed Sep 27 18:31:37 2017 +0200 SimulationExperiment view: 'don'\''t' update a graph 'plot'\''s' axes when changing some of the simulation parameters '(#1412).' Indeed, this makes things unnecessarily difficult if we want to support log scales. commit 7486c957d4e4e99f854ed01037097057c7f401f4 Author: Alan Garny '' Date: Wed Sep 27 18:30:26 2017 +0200 SimulationExperiment view: 'don'\''t' update a graph 'plot'\''s' axes when changing some of the simulation parameters '(#1412).' Indeed, this makes things unnecessarily difficult if we want to support log scales. commit f772fdf4d944316dcdec355e8a85622996d38308 Author: Alan Garny '' Date: Wed Sep 27 17:33:25 2017 +0200 SimulationExperiment view: some work on supporting log scales '(#1412).' commit 1824e9669c884e82632a840b4b8adf914cabdc52 Author: Alan Garny '' Date: Wed Sep 27 17:02:46 2017 +0200 GraphPanel widget: added a default minimum axis value for log axes '(#1412).' commit 2474f2d662f18bd16cda17339360fbc46ce6e90a Author: Alan Garny '' Date: Wed Sep 27 16:44:20 2017 +0200 Some minor refactoring. commit 354d57fae67fe5b7248eba9fba4810b286f828f7 Author: Alan Garny '' Date: Wed Sep 27 16:42:48 2017 +0200 Some minor cleaning up. commit faf29bc1ee3793e61678a9282690cd4498496303 Author: Alan Garny '' Date: Wed Sep 27 16:16:51 2017 +0200 Some minor cleaning up. commit 4ff54bd0c23bef09d3076ff834054882bb1c1ec7 Author: Alan Garny '' Date: Wed Sep 27 16:04:06 2017 +0200 Some minor cleaning up. commit bfa0143731733c7cf7066792998cfc0e7b8566a8 Author: Alan Garny '' Date: Wed Sep 27 11:39:26 2017 +0200 GraphPanel widget: use the same axis optimisation algorithm for linear and logarithmic axes '(#1412).' We used to try to be too $'\342\200\230clever\342\200\231,' but it $'wasn\342\200\231t' working '(!!).' Indeed, say that you had an axis with values between 14.896525 and 49.408874, then our old optimisation would tell us to use an axis range of '[10;' '60]' while ideally it would be '[14;' '50],' as for a linear axis. In the end, the algorithm for optimising linear axes seems to also work for logarithmic axes, so we are going to use that algorithm instead '(unless' we eventually find out $'it\342\200\231s' not working in some 'cases).' commit 65e1241dba3cc095b4a6ac7a9e475068bfeaaef7 Merge: 9e0a5b131 2f74b8ecc Author: Alan Garny '' Date: Tue Sep 26 19:02:04 2017 +0200 SimulationExperiment view: make sure that the GUI is properly initialised when '(re)loading' a SED-ML file. commit 2f74b8ecc8d448f2e702b9165e90f0ea837fe27d Author: Alan Garny '' Date: Tue Sep 26 18:03:00 2017 +0200 SimulationExperiment view: make sure that the GUI is properly initialised when '(re)loading' a SED-ML file. The problem was with opening a SED-ML file with 3 graph panels, each with a graph. Indeed, the first graph panel was properly selected, so I thought I would change the colour of its graph by right clicking on its colour property, but the '"Select' 'Colour..."' menu item 'wasn'\''t' visible '(in' fact, other menu items were not properly enabled/disabled 'either).' So, $'it\342\200\231s' not a new problem, but one that has been around since we have added support for SED-ML, and it was related to the fact that when adding graph panels '(to' get the right number of graph panels mentioned in the SED-ML 'file),' we were adding them without asking for them to be active '(as' 'expected)' since we wanted the first graph panel to remain the active one. The problem with this is that the graphs panel widget '(associated' with the first graph 'panel)' 'wasn'\''t' the current widget anymore. So, upon right clicking, the context menu 'wasn'\''t' properly initialised since ''\''crtProperty'\''' in SimulationExperimentViewInformationGraphsWidget::propertyEditorContextMe 'nu()' was ''\''null'\''...' commit a70a2b8fa5b35068f6cce7cb81e9f6411ef15dea Author: Alan Garny '' Date: Tue Sep 26 17:35:03 2017 +0200 Some minor cleaning up. commit 9e0a5b1314c7f3fe73a888d581deb2950a7c6cd8 Merge: e5c77c7b1 8ae5c4246 Author: Alan Garny '' Date: Tue Sep 26 14:55:20 2017 +0200 GraphPanel widget: can now export a graph panel to various formats '(e.g.' PDF, PNG, 'SVG)' '(closes' '#1123).' commit 8ae5c4246181dd337a1ef39241e3fafc85524300 Author: Alan Garny '' Date: Tue Sep 26 13:40:01 2017 +0200 Some minor cleaning up. commit 112d01fcc01d796e4b1457bcf7b878fae5153eef Author: Alan Garny '' Date: Tue Sep 26 13:39:44 2017 +0200 Slight update to our downloads and what is new pages '(#1123).' commit 7edc6fd60af73a496c4bd77a36386d480e695b37 Author: Alan Garny '' Date: Tue Sep 26 13:39:15 2017 +0200 GraphPanel widget: can now export a graph panel to various formats '(e.g.' PDF, 'SVG)' '(#1123).' commit de6a20890123ea0f9e8ea2e51a2500381d6d3da7 Author: Alan Garny '' Date: Tue Sep 26 13:29:02 2017 +0200 GraphPanel widget: can now export a graph panel to various formats '(e.g.' PDF, 'SVG)' '(#1123).' commit bb0eba84b698fab531e6cff1ae3d862f9676e5e0 Author: Alan Garny '' Date: Tue Sep 26 11:16:26 2017 +0200 Some minor cleaning up. commit 76be166f4681348647488e2a636bbbfb8ef03797 Author: Alan Garny '' Date: Tue Sep 26 09:34:12 2017 +0200 GraphPanel widget: some work on making it possible to export a graph panel to various formats '(e.g.' PDF, PostScript, 'SVG)' '(#1123).' commit 6c3916ebc3d0e340505b31d25a6a9217e6a85bb7 Author: Alan Garny '' Date: Tue Sep 26 09:27:54 2017 +0200 Some minor cleaning up. commit e5c77c7b12323df549e5368919af4ff616f379d1 Merge: 931292af5 0c063d940 Author: Alan Garny '' Date: Mon Sep 25 17:40:59 2017 +0200 Added support for the alpha channel in the colours used to customise a graph. commit 0c063d940fd4a1293b131d1b847673fbcc5cd459 Author: Alan Garny '' Date: Mon Sep 25 16:51:52 2017 +0200 Slight update to our downloads pages. commit 7e3090d340e9b2c99766dd9168125868ea633150 Author: Alan Garny '' Date: Mon Sep 25 16:44:15 2017 +0200 Graph colour: added support for the alpha channel. commit b2f6af694803e86eddc072dd7bd49d81a9f599a2 Author: Alan Garny '' Date: Mon Sep 25 16:28:52 2017 +0200 Some minor cleaning up. commit 931292af5c74f975f03002a4215e98dcdd9fc887 Merge: c8910865b 0d1960014 Author: Alan Garny '' Date: Mon Sep 25 09:12:52 2017 +0200 New snapshot. commit 0d196001408131c720088037afe8003c8a496672 Author: Alan Garny '' Date: Mon Sep 25 08:30:03 2017 +0200 New snapshot. commit c8910865b4a2d1355998fcee8aff8ea6c11ccf66 Author: Alan Garny '' Date: Mon Sep 25 08:27:02 2017 +0200 Slight update to our third party libraries page '[ci' 'skip].' commit b6b535c0bfb33848a5cb5f1a9fb0eab944cbcb27 Merge: 7252c7d58 331ed0bb1 Author: Alan Garny '' Date: Mon Sep 25 08:24:18 2017 +0200 Ninja: pass arguments to '`genericmake`' onto ninja. commit 331ed0bb1ea442f40e462d230972af15da9bf314 Author: David Brooks '' Date: Mon Sep 25 13:59:26 2017 +1300 Ninja: pass arguments to '`genericmake`' onto ninja. commit 7252c7d58e9981f096d069a5e34cac8c0faa9068 Merge: ae152e437 5bf4be1a1 Author: Alan Garny '' Date: Fri Sep 22 18:42:10 2017 +0200 Simulation Experiment view: added the ability to customise a graph '(closes' '#591).' commit 5bf4be1a118c054ca78394c3055a5cdab98e07c1 Author: Alan Garny '' Date: Fri Sep 22 17:36:25 2017 +0200 Slight improvement to 'SimulationExperimentViewInformationGraphsWidget::updateGraphsInfo().' commit c8a6ebb0fadcd3eb0fff3abd8db14a190adf3cc2 Author: Alan Garny '' Date: Fri Sep 22 17:20:21 2017 +0200 Slight updates to our downloads and what is new pages '(#591).' commit 2e0e4f98471b5478de54045324f958795b614b0d Author: Alan Garny '' Date: Fri Sep 22 17:09:39 2017 +0200 Simulation Experiment view: ability to customise a graph '(#591).' commit 9760f1ac2cdf26f5b95934fea607063a4e3f01ad Author: Alan Garny '' Date: Fri Sep 22 17:02:28 2017 +0200 Simulation Experiment view: ability to customise a graph '(#591).' commit 9d6761fc901e6a8a5b853bfb29eea57d17f83a7c Author: Alan Garny '' Date: Fri Sep 22 16:57:27 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit bc0523e50da40e2d6cebffb5ee7cacaae8b6888e Author: Alan Garny '' Date: Fri Sep 22 16:45:18 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit 7a7662c66530503abe9a841c4864c740b9a5c429 Author: Alan Garny '' Date: Fri Sep 22 16:33:03 2017 +0200 Some minor cleaning up. commit 6ed524b4f49b9af24405e9d14d14e0c521ceb66e Author: Alan Garny '' Date: Fri Sep 22 16:28:05 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit ef5faba6d9baa3384978cdf5f986346c0180231c Author: Alan Garny '' Date: Fri Sep 22 16:25:42 2017 +0200 Some minor cleaning up. commit 5275caf7fc8b8c5f659e45c5f2146d52c4bf01cc Author: Alan Garny '' Date: Fri Sep 22 16:25:28 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit 2c2c4f1894f4e4b06627ab359f2e898e4454b67f Author: Alan Garny '' Date: Fri Sep 22 16:04:54 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit 3aa193271593c873601b98f7d9dd552561244848 Author: Alan Garny '' Date: Fri Sep 22 15:38:16 2017 +0200 PropertyEditor widget: simplified things a bit. commit 4fb2c008eb3cc99e25177bc43cd75f1702adb06c Author: Alan Garny '' Date: Fri Sep 22 14:14:06 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit 92bad5bbf563a904925904dac52cfd9830a39793 Author: Alan Garny '' Date: Fri Sep 22 14:02:07 2017 +0200 Simulation Experiment view: retrieving a 'graph'\''s' properties from a SED-ML file '(#591).' commit 6f06661484154b353abfcf8ffa6004875da71810 Author: Alan Garny '' Date: Fri Sep 22 13:18:08 2017 +0200 Some minor cleaning up. commit cb0a7031dc36d89fc2f3f8f786036967a2fa0889 Author: Alan Garny '' Date: Fri Sep 22 12:51:35 2017 +0200 Simulation Experiment view: now check that the curve properties of a SED-ML file are indeed supported '(#591).' commit 3d331d0b51fc474f700ffd052fa050ae76eac2e0 Author: Alan Garny '' Date: Fri Sep 22 11:43:43 2017 +0200 Simulation Experiment view: now check that the curve properties of a SED-ML file are indeed supported '(#591).' commit 5f4034c11bdcfb18f71a902cf0a33b5f7a0ff4c1 Author: Alan Garny '' Date: Fri Sep 22 11:29:31 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported '(#591).' commit e251d1e2f8ca8895f705da35f2f1cb5eca75e4f9 Merge: eb1559fca ae152e437 Author: Alan Garny '' Date: Fri Sep 22 11:03:29 2017 +0200 Merge branch ''\''master'\''' into issue591. commit ae152e43780474b90421eae9a550ab322fc66965 Merge: 6cdb6b495 faacff18c Author: Alan Garny '' Date: Fri Sep 22 10:59:16 2017 +0200 SED-ML support: some cleaning up, refactoring and minor improvements. commit faacff18c2e2ccd6117b0a1fe99325dfeb228a0d Author: Alan Garny '' Date: Fri Sep 22 10:23:54 2017 +0200 SED-ML support: improved the checking of a second simulation annotation. Indeed, we 'didn'\''t' use to check everything. commit e71a35f9e80fa3449e79c23b19178e4b4baeae47 Author: Alan Garny '' Date: Fri Sep 22 10:22:20 2017 +0200 SED-ML support: whenever possible, prove the line/column of an issue. commit 377a4d84fb66b9cfcd9fc29317c80e24293b787b Author: Alan Garny '' Date: Fri Sep 22 10:21:40 2017 +0200 SED-ML support: some minor cleaning up. commit 2513621d194302891e45e2f62ffcace500813822 Author: Alan Garny '' Date: Fri Sep 22 10:20:17 2017 +0200 SED-ML support: some minor refactoring. commit b1c18591b53d6f89083954de672f18ae8f014be4 Author: Alan Garny '' Date: Fri Sep 22 10:17:47 2017 +0200 SED-ML support: slight improvement to some of our messages. commit 743777ab086127d7b372fd2c8ef32a5e5bd2bf1f Author: Alan Garny '' Date: Fri Sep 22 10:16:29 2017 +0200 SED-ML support: some minor cleaning up. commit eb1559fca4967c3a24c271275b32e1d866827de0 Author: Alan Garny '' Date: Thu Sep 21 20:04:43 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported '(#591).' commit d126c18a3ebf8930c5b82cf9fbfcb42b2d288765 Author: Alan Garny '' Date: Thu Sep 21 20:03:03 2017 +0200 Some minor cleaning up. commit 71dbf6f311483b425f0ecb0f7f77cb64cd66aeb9 Author: Alan Garny '' Date: Thu Sep 21 19:46:45 2017 +0200 Simulation Experiment view: partially check that the curve properties of a SED-ML file are indeed supported '(#591).' commit 1ce8ffc146b0bd10c1dc2823dfa34324a7d1ccbd Author: Alan Garny '' Date: Thu Sep 21 19:30:37 2017 +0200 SED-ML support: whenever possible, provide line/column information for unsupported issues. commit 382d222df4cea596c9561f694f73beba1521b08e Author: Alan Garny '' Date: Thu Sep 21 19:29:38 2017 +0200 Some minor cleaning up. commit 2c82f41f38f291950deef68b6bd69cfd6729c3e9 Author: Alan Garny '' Date: Thu Sep 21 19:02:07 2017 +0200 Some minor cleaning up. commit c0e15512530f4e74a74d8eca6129add2a8edc4aa Author: Alan Garny '' Date: Thu Sep 21 18:08:03 2017 +0200 Some minor cleaning up. commit 1f9d6be662b8fe087553d3acc36e816461e63d7b Author: Alan Garny '' Date: Thu Sep 21 17:35:17 2017 +0200 Some minor cleaning up. commit 978c9d5190247a83d7b23db229215a59f5b98552 Author: Alan Garny '' Date: Thu Sep 21 17:32:53 2017 +0200 Some minor cleaning up. commit 363373c675186b10a6ca6eec9b09d02b092c8d49 Author: Alan Garny '' Date: Thu Sep 21 17:24:43 2017 +0200 SED-ML support: some minor refactoring and improved our support for SED-ML files exported by OpenCOR. Regarding support, we $'didn\342\200\231t' use to check that the annotation of two simulation algorithms was the same. commit fd17cc51daab1523108723abf347d6b44ee92dda Author: Alan Garny '' Date: Thu Sep 21 16:59:28 2017 +0200 SED-ML support: some minor refactoring. commit efc25b1c82683f6894d455c260e907a62b6fc4ab Author: Alan Garny '' Date: Thu Sep 21 16:46:15 2017 +0200 Simulation Experiment view: can now select a colour to customise a 'graph(#591).' commit 685d023ad6a9e99549ac75cd60397c0318efc319 Author: Alan Garny '' Date: Thu Sep 21 16:35:26 2017 +0200 Simulation Experiment view: can now select a colour to customise a 'graph(#591).' commit 1d5ab741656bccb5b56ada5eecb40144ac9c0e2a Author: Alan Garny '' Date: Thu Sep 21 15:31:08 2017 +0200 Simulation Experiment view: can now export the line and symbol properties of a graph to SED-ML '(#591).' commit 3a01213720dcd1cf1c61c3dc60aea86485900167 Author: Alan Garny '' Date: Thu Sep 21 15:30:48 2017 +0200 PropertyEditor widget: make sure that a valid colour is provided '(#591).' commit 10ee82c07d08607930f4c3148031065e3b3fde67 Merge: 809e9532b 6cdb6b495 Author: Alan Garny '' Date: Thu Sep 21 15:06:03 2017 +0200 Merge branch ''\''master'\''' into issue591. commit 6cdb6b495f256e44a7422043f049859be4175424 Merge: fef2d5a56 9e2acfe84 Author: Alan Garny '' Date: Thu Sep 21 14:28:54 2017 +0200 Various cleaning ups. commit 9e2acfe842d8546b6fa2645cdf2d519498027fda Author: Alan Garny '' Date: Thu Sep 21 13:54:24 2017 +0200 Some minor cleaning up. commit 809e9532bc74b9a094d6a6d5cb8aae9a730a563d Author: Alan Garny '' Date: Thu Sep 21 13:43:56 2017 +0200 Some minor cleaning up. commit 9f3133864fb276257edb30322ad06642082b24a5 Author: Alan Garny '' Date: Thu Sep 21 13:32:34 2017 +0200 SimulationExperiment view: now have two signals for letting people that a graph or several graphs have been updated. commit ef34e33f94fdd5becfb59b2b93bc24683e35a5ea Author: Alan Garny '' Date: Thu Sep 21 13:30:30 2017 +0200 Some minor cleaning up. commit e82190e0b3b0d6d3aec4e2c536a5e49591dabbc6 Author: Alan Garny '' Date: Thu Sep 21 13:21:39 2017 +0200 SimulationExperiment view: make sure that a 'solver'\''s' properties are properly exported to SED-ML. The problem was with double values. For example, 1e-07 used to be exported as 9.9999999999999995e-08. Read back, the value was correctly set to 1e-07, so everything was kind of fine except for the fact that the SED-ML file gave the $'\342\200\230wrong\342\200\231' impression. commit 89aecd629071929a8b2e530820d9d6465911a44a Author: Alan Garny '' Date: Thu Sep 21 13:20:18 2017 +0200 SimulationExperiment view: make sure that a 'solver'\''s' properties are properly exported to SED-ML. The problem was with double values. For example, 1e-07 used to be exported as 9.9999999999999995e-08. Read back, the value was correctly set to 1e-07, so everything was kind of fine except for the fact that the SED-ML file gave the $'\342\200\230wrong\342\200\231' impression. commit 07e8c9b8aae21a26b948697790c34e93235f7acd Author: Alan Garny '' Date: Thu Sep 21 13:17:45 2017 +0200 Some minor cleaning up. commit a5c07f26bb5608e8bb6fdb4a547d4ba097526a28 Author: Alan Garny '' Date: Thu Sep 21 13:10:39 2017 +0200 Some minor cleaning up. commit 2d8510d06fa5f687f09c3ca6c9f28566164ffc59 Author: Alan Garny '' Date: Thu Sep 21 11:55:57 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit e56f01d01c818bc3630c8fa6c9042618c874f33a Author: Alan Garny '' Date: Thu Sep 21 11:51:03 2017 +0200 GraphPanel widget: small fix to 'GraphPanelPlotWidget::optimiseAxis().' The problem was that if you have a graph with a log scale and some negative data, then to keep pressing F9 might result in the list of ticks being $'empty\342\200\246' commit 1e323bacf0e2e9d99e051e055e452671a1fda1be Author: Alan Garny '' Date: Thu Sep 21 11:49:31 2017 +0200 GraphPanel widget: provide a better cap and join style for the pen of a graph. Using the default cap and join styles, to increase to the width of the pen resulted in rather ugly rendering while it now looks smooth, which will be useful when supporting the customisation of graphs. commit 40c8ee80d43eb4428e9a55edca8dbe9520f20e7a Author: Alan Garny '' Date: Thu Sep 21 11:47:06 2017 +0200 Some minor cleaning up. commit 5fedd7c8d96b4b18dfdd64a9251cff568f33061d Author: Alan Garny '' Date: Thu Sep 21 11:46:17 2017 +0200 SED-ML support: consider '`fatal`' errors as errors indeed '(!!).' commit 3d6e6c65ee9226b63b9a1f51bbc9226d228b0c33 Author: Alan Garny '' Date: Thu Sep 21 11:44:17 2017 +0200 PropertyEditor widget: reorganisation, simplification and cleaning up of code. commit d08bc22207c45bf833dbb656d47e72560387ac8b Author: Alan Garny '' Date: Thu Sep 21 11:36:17 2017 +0200 Some minor cleaning up. commit 4810438c313a9856ee7ef5a02bbaca580f1e90c0 Author: Alan Garny '' Date: Thu Sep 21 11:31:22 2017 +0200 Some minor cleaning up. commit 6f3544967959d23565a9aab9f913fe47684d6497 Author: Alan Garny '' Date: Thu Sep 21 10:00:03 2017 +0200 Some minor cleaning up. commit af74ace71a363c52a9e86a1ce0af382c83385566 Author: Alan Garny '' Date: Thu Sep 21 09:33:13 2017 +0200 Some minor cleaning up. commit 4871c877be5bfbd5a8d8eb3c4e64188c39914d6b Author: Alan Garny '' Date: Thu Sep 21 08:59:42 2017 +0200 Simulation Experiment view: can now export the line and symbol properties of a graph to SED-ML '(#591).' commit a9b9d83d1b0094cd1e6898da7de2efe746683766 Merge: abf7705a8 6bda5e266 Author: David Brooks '' Date: Thu Sep 21 17:01:11 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 6bda5e2661297fcd5f2b225538abc1042e42e183 Author: David Brooks '' Date: Thu Sep 21 16:57:16 2017 +1200 Python: add typedef for std::bind result under gcc. commit abf7705a822040ca39af55121edb707dd37fd203 Author: David Brooks '' Date: Thu Sep 21 16:57:16 2017 +1200 Python: add typedef for std::bind result under gcc. commit 9f4fd4dcc2dde0453dd329b49231e012a3399d18 Author: Alan Garny '' Date: Wed Sep 20 19:07:39 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML '(#591).' commit b06f81a1dd2752bb794c3e02497942ad6a73bd7c Author: Alan Garny '' Date: Wed Sep 20 18:20:47 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML '(#591).' commit 7910941f12e63fbea9424b25ce802706458a9cb9 Merge: 4d91e040f fef2d5a56 Author: Alan Garny '' Date: Wed Sep 20 18:06:43 2017 +0200 Merge branch ''\''master'\''' into issue591. commit fef2d5a56b4a955199c00107bbe370230ca88e4b Merge: 2e0e0aade 933fbae2e Author: Alan Garny '' Date: Wed Sep 20 18:05:49 2017 +0200 ZIP support: now use 755 for directories and 644 for files, if no file permissions are set '(closes' '#1417).' commit 4d91e040f1f1df6216c62b4665cb58359b6e6570 Merge: 8dd394156 2e0e0aade Author: Alan Garny '' Date: Wed Sep 20 17:21:37 2017 +0200 Merge branch ''\''master'\''' into issue591. commit 2e0e0aade6297895040affa06e607a22422db2b2 Author: Alan Garny '' Date: Wed Sep 20 17:19:59 2017 +0200 Slight update to our prerequisites page following the release of Xcode 9.0 '[ci' 'skip].' commit 8dd39415665af4d1c82892dfc4bc12bd6746b1e6 Author: Alan Garny '' Date: Wed Sep 20 17:16:41 2017 +0200 Make sure that things build on Windows and Linux. commit d0ade9b72b02348255af7363ee676fccc8745eb2 Author: Alan Garny '' Date: Wed Sep 20 17:08:58 2017 +0200 Simulation Experiment view: can export the line and symbol properties of a graph to SED-ML '(#591).' We need to improve our export of the style of a line/symbol since $'it\342\200\231s' not language agnostic '(i.e.' we can have $'\342\200\234Solid\342\200\235' or $'\342\200\234Solide\342\200\235' depending on whether OpenCOR is in English or in 'French).' commit 518b013fe29ca0f72a32fc72d44c4439782f3193 Author: Alan Garny '' Date: Wed Sep 20 16:47:36 2017 +0200 SimulationExperiment view: some minor cleaning up with regards to the handling of properties. commit 933fbae2e267ae4dbc76b801570c7747109b7716 Author: Alan Garny '' Date: Wed Sep 20 14:06:14 2017 +0200 Slight updates to our downloads and what is new pages '(#1417).' commit d0f2f7b78a4c0bb090581a9e729179738e21ae9d Author: Alan Garny '' Date: Wed Sep 20 14:02:21 2017 +0200 ZIP support: use 755 for directories and 644 for files, if no file permissions are set '(#1417).' commit e6a8484a1c9853e70e2483d61a23cea7b2a08bd4 Merge: 9f8281f36 6ac458b2d Author: David Brooks '' Date: Wed Sep 20 14:48:03 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 6ac458b2dbe47be37febddf01472f61f90889102 Author: David Brooks '' Date: Wed Sep 20 14:47:28 2017 +1200 Python: get a clean build with MSVC 2014. commit 9f8281f365400ddda2ba21338802ea1c8192bd5a Merge: f21bddf50 14ebfb961 Author: David Brooks '' Date: Wed Sep 20 14:44:20 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 14ebfb96127ea34abe1728d0df6dcd7ecd929d3f Author: David Brooks '' Date: Wed Sep 20 11:14:22 2017 +1200 Python: Update pre-built packages for Windows. commit 803088caa86b5494ab151c9d18357c9c924f6ccd Author: David Brooks '' Date: Wed Sep 20 11:13:46 2017 +1200 Python: Get clean build with MSVC 2014 Update 3. commit f21bddf50790af0bacc9ca51bfc57453255bb05e Merge: f1bccaf04 7f1ccb301 Author: David Brooks '' Date: Wed Sep 20 10:08:02 2017 +1200 Merge branch ''\''master'\''' into python_opt commit e91a308806be3c7de24a137adaca4723291fc41d Merge: 1969abaf1 7f1ccb301 Author: David Brooks '' Date: Wed Sep 20 10:07:47 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 68b4878085df347e602a6df71e921003134b11b4 Author: Alan Garny '' Date: Tue Sep 19 19:06:21 2017 +0200 Some minor cleaning up. commit 96727bd8b6251cb3e1a035cb83e27485f0e1e260 Author: Alan Garny '' Date: Tue Sep 19 19:03:28 2017 +0200 Some minor cleaning up. commit 914711ee46125d0fdd43d3e7d0754dfd27d984f2 Merge: 87a473167 7f1ccb301 Author: Alan Garny '' Date: Tue Sep 19 17:45:22 2017 +0200 Merge branch ''\''master'\''' into issue591. commit 7f1ccb301f97455afdf28a925946c3d156ab54c7 Merge: dd79ce023 591940281 Author: Alan Garny '' Date: Tue Sep 19 17:41:11 2017 +0200 Qwt: 'don'\''t' set '`_USE_MATH_DEFINES`' for MSVC as '`qmath.h`' does so. commit 87a4731673d62c95190fd58a99fc1feb3160470e Author: Alan Garny '' Date: Tue Sep 19 17:32:54 2017 +0200 SED-ML support: consider '`fatal`' errors as errors indeed '(!!).' commit 5919402813677e74017907a7c67c5b78da0f85e3 Author: Alan Garny '' Date: Tue Sep 19 14:14:20 2017 +0200 Generated new binaries for our Qwt package. commit edfc8049b3cf00760d198cf4d66cb874d421598e Author: Alan Garny '' Date: Tue Sep 19 14:00:12 2017 +0200 Get ready to rebuild our Qwt package. commit 88d8e923b3dc27593c04f7d591cc2fc575bafb92 Author: Alan Garny '' Date: Tue Sep 19 13:17:12 2017 +0200 SimulationExperiment view: properly handle SED-ML/COMBINE issues. commit e562361cc584ed82e11e02e988c98b74c4e1f331 Author: Alan Garny '' Date: Tue Sep 19 13:08:31 2017 +0200 Some minor cleaning up. commit 022a7974da677431fbb20b0a8acc5d51bf52de94 Author: Alan Garny '' Date: Tue Sep 19 11:38:12 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit 82aa34722eaf420d7359cf6291659e8210e56de9 Author: Alan Garny '' Date: Tue Sep 19 11:16:46 2017 +0200 SimulationExperiment view: properly handle fatal/error SED-ML/COMBINE issues. commit c54358ce65041a170729befab6aea66d40321027 Author: Alan Garny '' Date: Mon Sep 18 17:14:57 2017 +0200 Some minor cleaning up. commit 5ccb75b295b201e03706dea8f641357c9bbe1fa8 Merge: 437216ac6 dd79ce023 Author: Alan Garny '' Date: Mon Sep 18 15:14:02 2017 +0200 Merge branch ''\''master'\''' into issue591. commit dd79ce02380e77f8332df708b2f44a4acdbfac40 Merge: 339a90690 7466a283e Author: Alan Garny '' Date: Mon Sep 18 15:12:21 2017 +0200 QScintilla widget: add line numbers '(closes' '#1413).' commit 7466a283eb2c4dad15f5d7712ed4fa05f29643c4 Author: Alan Garny '' Date: Mon Sep 18 14:13:49 2017 +0200 Slight updates to our downloads and what is new pages '(#1413).' commit 9f726098be1f7686934287d82805cb2525328537 Author: Alan Garny '' Date: Mon Sep 18 14:07:56 2017 +0200 QScintilla widget: have line numbers scale properly '(#1413).' commit af24b4e278b93823dd35872145d3d9ffe07f6e7f Author: Alan Garny '' Date: Mon Sep 18 11:06:11 2017 +0200 QScintilla widget: added line numbers '(#1413).' commit 437216ac627c54492cd50869dcd7b73aef9cfe79 Author: Alan Garny '' Date: Fri Sep 15 19:05:14 2017 +0200 Simulation Experiment view: allow for symbols not to be filled '(#591).' commit 65c897b0eea68cfd615de3cabfa308433ee92813 Author: Alan Garny '' Date: Fri Sep 15 18:50:17 2017 +0200 Simulation Experiment view: now display an icon that shows the actual colour of a colour property '(#591).' commit a9d39b08ecef55d563f4e1c7f00b103cd0d7d0bb Author: Alan Garny '' Date: Fri Sep 15 18:46:23 2017 +0200 Some minor cleaning up. commit cd0fce505d18f0ab33e12a4fafbd2139c74975d0 Author: Alan Garny '' Date: Fri Sep 15 18:45:09 2017 +0200 PropertyEditor widget: some minor reordering of things. commit 8912c616bd15ba611f0b4681c435fbba1d520aec Author: Alan Garny '' Date: Fri Sep 15 18:13:24 2017 +0200 Simulation Experiment view: can now specify the colour of a line, as well as the colour and filled colour of a symbol '(#591).' commit e09615bd809483a9da0668e477adfd11280e5407 Author: Alan Garny '' Date: Fri Sep 15 17:54:34 2017 +0200 PropertyEditor widget: some minor cleaning up. commit 89e42d93440a295379a508a947286fd18a44f619 Author: Alan Garny '' Date: Fri Sep 15 17:43:56 2017 +0200 Simulation Experiment view: the line width and symbol size are now ''\''proper'\''' strictly positive double and integer properties '(#591).' commit d8700988729274a230c5107b26c904138ca285c7 Author: Alan Garny '' Date: Fri Sep 15 16:33:24 2017 +0200 PropertyEditor widget: some minor cleaning up. commit f1c353620ad8e2857eaa0d78fac277f2660da4b8 Author: Alan Garny '' Date: Fri Sep 15 16:13:28 2017 +0200 Simulation Experiment view: can now change the style and size of a graph symbol '(#591).' commit 16038a041e1331ec8a93059abacfb1a288a53ab7 Author: Alan Garny '' Date: Fri Sep 15 16:08:56 2017 +0200 Simulation Experiment view: can now change the style and size of a graph symbol '(#591).' commit b439b3e7224b5a2f92733a7e445552e7c6a51292 Author: Alan Garny '' Date: Fri Sep 15 15:50:27 2017 +0200 Simulation Experiment view: some minor cleaning up '(#591).' commit 641cefce8f6413e400c91bc7c451d458604c1805 Author: Alan Garny '' Date: Fri Sep 15 15:49:45 2017 +0200 Simulation Experiment view: removed the '(symbol)' filled property and replaced it with a size one '(#591).' commit 3d6e330a1e0c7b28e1624acba953f353f382523b Author: Alan Garny '' Date: Fri Sep 15 15:02:38 2017 +0200 Simulation Experiment view: renamed the graphPenUpdated signal to graphVisualUpdated '(#591).' commit 34238e7465fb12841359e9f25baf30a2e562788d Author: Alan Garny '' Date: Fri Sep 15 14:54:20 2017 +0200 Simulation Experiment view: reordered the properties of a graph line '(#591).' commit fdd7d1c442520a0dc72173323cd02615c6c67063 Author: Alan Garny '' Date: Fri Sep 15 14:18:58 2017 +0200 GraphPanel widget: small fix to 'GraphPanelPlotWidget::optimiseAxis().' The problem was that if you have a graph with a log scale and some negative data, then to keep pressing F9 might result in the list of ticks being $'empty\342\200\246' commit b1cfe0f789931c7510530b75a2641d71134ce438 Author: Alan Garny '' Date: Fri Sep 15 13:51:47 2017 +0200 Simulation Experiment view: have graph symbols filled by default '(#591).' commit 619ab2c2dc6c21911a22174f564533f91b12d2e4 Author: Alan Garny '' Date: Fri Sep 15 13:50:06 2017 +0200 Simulation Experiment view: some reworking of code '(#591).' Also added the horizontal line as a symbol, which I had missed earlier. commit f4cd5dc4d32c1f19c36d8a09f2425d5e76e59ad8 Author: Alan Garny '' Date: Fri Sep 15 13:33:59 2017 +0200 Simulation Experiment view: only replot a graph if its pen has been modified '(#591).' This is as opposed to update a graph, which resets the axes among other things. commit 3482931a70a728f85575389ff872d9ea69cca1b2 Author: Alan Garny '' Date: Fri Sep 15 13:21:20 2017 +0200 Simulation Experiment view: some minor reworking of code '(#591).' commit 396c55350bdfc1dc1554a16f037c61ff6100d8d6 Author: Alan Garny '' Date: Fri Sep 15 11:55:57 2017 +0200 Simulation Experiment view: can now change the style of a graph line '(#591).' commit f7e475dc129ffb04ffd22d4fc919d81565d6cb8c Author: Alan Garny '' Date: Fri Sep 15 11:48:58 2017 +0200 Simulation Experiment view: can now change the style of a graph line '(#591).' commit d655d6fa12a69bb59689e52fa0e7e87c42ed9fe5 Author: Alan Garny '' Date: Fri Sep 15 11:39:49 2017 +0200 Simulation Experiment view: can now change the style of a graph line '(#591).' commit d05cb600e493da5fceffec3a7e736e53e6ae80cf Merge: 0f738f94d 339a90690 Author: Alan Garny '' Date: Fri Sep 15 11:35:31 2017 +0200 Merge branch ''\''master'\''' into issue591. commit 339a9069036336fb605771a49dada62058deba8d Author: Alan Garny '' Date: Fri Sep 15 11:34:11 2017 +0200 Slight update to our prerequisites page '[ci' 'skip].' commit 0f738f94d155c8853bf4a168ef9cd2f82f6d894c Author: Alan Garny '' Date: Fri Sep 15 10:58:58 2017 +0200 Some minor cleaning up. commit 57779f163271e5886ba613fdfcae350231799df2 Author: Alan Garny '' Date: Fri Sep 15 10:40:39 2017 +0200 Some minor cleaning up. commit ea4a78ebacfae3f7606dd1a71e2f59fac64982bb Author: Alan Garny '' Date: Fri Sep 15 10:26:11 2017 +0200 PropertyEditor widget: reverting some of our recent changes. commit f1bccaf04d13c87701c9742a5022978c2eb7092e Author: David Brooks '' Date: Fri Sep 15 12:15:59 2017 +1200 CVODE and IDA solver classes have been renamed. commit 43c41740e6fa5775c81337401d774eee04211b07 Merge: 5a5ce1561 1969abaf1 Author: David Brooks '' Date: Fri Sep 15 11:59:17 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 5a5ce1561bd04e8cc3a3088acd2948be31bbebcb Merge: 11d460ff0 ea140b8be Author: David Brooks '' Date: Fri Sep 15 11:59:07 2017 +1200 Merge branch ''\''master'\''' into python_opt commit 1969abaf1412fd793ddf630e2c07c62db8a7ecba Merge: 52bd11ef4 ea140b8be Author: David Brooks '' Date: Fri Sep 15 11:58:37 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 11d460ff039ec283df198cf36cb3c9825a1040b3 Merge: 8e9a48d23 52bd11ef4 Author: David Brooks '' Date: Fri Sep 15 11:57:07 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 52bd11ef46b95aba5455e10fe02476921177aa7c Author: David Brooks '' Date: Fri Sep 15 11:55:11 2017 +1200 Python: clear simulation data when resetting a simulation. commit 0e2b9919eb1a3cabc11c6def500d603011ad31e0 Author: Alan Garny '' Date: Thu Sep 14 16:24:59 2017 +0200 Simulation Experiment view: properly distinguish between our root property and a line/symbol section property '(#591).' commit a804a2cce6ba0284e5c7da6e14104630fa48659d Author: Alan Garny '' Date: Thu Sep 14 15:29:50 2017 +0200 PropertyEditor widget: added a ListEditorWidget class. This will help us with creating an icon list. commit e3626331195473963955c3b2b1f1521f3ba9f550 Author: Alan Garny '' Date: Thu Sep 14 15:23:42 2017 +0200 PropertyEditor widget: renamed list editor classes/methods to string list editor. commit 4557f334501579e788eff97d35e12ce7644df1d2 Author: Alan Garny '' Date: Thu Sep 14 14:37:13 2017 +0200 Simulation Experiment view: can now change the width of a graph line '(#591).' commit 18cb536af7a3205e5f6ba4a8411e5c91bd11d423 Author: Alan Garny '' Date: Thu Sep 14 14:36:11 2017 +0200 GraphPanel widget: provide a better cap and join style for the pen of a graph. Using the default cap and join styles, to increase to the width of the pen resulted in rather ugly rendering while it now looks smooth. commit ebc722a36c2e78148e0a59620990ed848434cd3a Author: Alan Garny '' Date: Wed Sep 13 17:55:16 2017 +0200 Create Simulation Experiment view: $'don\342\200\231t,' anymore, change the colour of a graph based on the value of its model property '(#591).' commit fe21f8ea3368f19ac80cb7875497502a519b64aa Author: Alan Garny '' Date: Wed Sep 13 17:43:50 2017 +0200 Create Simulation Experiment view: updated 'SimulationExperimentViewInformationGraphsWidget::graphChanged()' to account for the fact that a property may be under the line/symbol section '(#591).' commit 621774a35afb94923140f1256ae9cbffc6ea2916 Author: Alan Garny '' Date: Wed Sep 13 17:41:23 2017 +0200 Create Simulation Experiment view: added some properties for the customisation of a graph line and symbol '(#591).' commit 77451f743dceb4f3af96b6189cde493dfd31a073 Author: Alan Garny '' Date: Wed Sep 13 17:24:30 2017 +0200 Some minor cleaning up. commit ea140b8be74a5f451ea364d8abef1471e4dfe5f9 Author: Alan Garny '' Date: Wed Sep 13 15:25:55 2017 +0200 Make sure that ccache gets used, if available. This is not needed when building OpenCOR from the command line, but it is when building it using Qt Creator. commit 3db7de3c333184c208afb1070d11df316c1dec70 Merge: 7bc0dd043 b0e01687f Author: Alan Garny '' Date: Wed Sep 13 12:52:54 2017 +0200 New snapshot. commit b0e01687f7cbfd2990ca14bfdd44b16ca8ba2543 Author: Alan Garny '' Date: Wed Sep 13 11:28:54 2017 +0200 New snapshot. commit 7bc0dd0431a4ad4baef9fc39703ab4641f9e1365 Author: Alan Garny '' Date: Wed Sep 13 11:17:26 2017 +0200 Added clcache to our '(optional)' prerequisites '[ci' 'skip].' commit 8caf86f8e4d070a06d66992164ee683b916a0f83 Merge: 41627fd5a e7d789754 Author: Alan Garny '' Date: Wed Sep 13 01:02:49 2017 +0200 LLVM+Clang: upgraded to version 5.0.0 '(closes' '#1407).' commit e7d789754dd4cfbb190a14ec64dd3899580ca34a Author: Alan Garny '' Date: Tue Sep 12 23:55:04 2017 +0200 LLVM+Clang: updated our Windows packages '(#1407).' commit c4627e5f63697f6e115f1b8cd7d1b56acfccdfcf Author: Alan Garny '' Date: Tue Sep 12 19:07:03 2017 +0200 Oops, removed a bit too much in commit 'e883e0c!' commit e883e0c431f79a6d027dace1ae28bb21a3bf16c7 Author: Alan Garny '' Date: Tue Sep 12 18:56:55 2017 +0200 LLVM+Clang: updated our Linux and macOS packages '(#1407).' commit 74ae8e0c0f501d4d5596559ace4ea21e7c40d6cd Author: Alan Garny '' Date: Tue Sep 12 13:10:37 2017 +0200 Slight update to our downloads page '(#1407).' commit 94e7afb2648e87205caaaf8b95290bc1042c5b51 Author: Alan Garny '' Date: Tue Sep 12 13:09:03 2017 +0200 Slight update to our third-party libraries page '(#1407).' commit 961c9951d4845a260e1d45db10ee286717aac35e Author: Alan Garny '' Date: Tue Sep 12 11:42:00 2017 +0200 LLVM+Clang: when it comes to tools, only build Clang '(through' 'DLLVMCLANG_BUILD_SHARED_LIB;' '#1407).' commit 1c3bcc5540a7c9064903fb7145efec067886d378 Author: Alan Garny '' Date: Tue Sep 12 10:50:35 2017 +0200 LLVM+Clang: when it comes to tools, only build Clang '(through' 'DLLVMCLANG_BUILD_SHARED_LIB;' '#1407).' commit 602819643b2a9d2d6af5d698ed5d7f845d086483 Author: Alan Garny '' Date: Mon Sep 11 18:57:14 2017 +0200 LLVM+Clang: make sure that we can build the package '(#1407).' commit be4c8da051e8cd9ee5653b9718501ea33e5f3d90 Merge: adb7ce8dd 41627fd5a Author: Alan Garny '' Date: Sat Sep 9 20:05:26 2017 +0200 Merge branch ''\''master'\''' into issue1407. commit 41627fd5a35ec4019e72ffb77734c313451631be Merge: 15cc51f48 d716194ef Author: Alan Garny '' Date: Sat Sep 9 20:01:32 2017 +0200 GraphPanel widget: added support for log scales '(closes' '#1299).' commit adb7ce8dda01cf7740382c2867fe2b9263bb75ef Author: Alan Garny '' Date: Sat Sep 9 15:05:03 2017 +0200 LLVM+Clang: getting ready to rebuild the package '(#1407).' commit 297d62eb021bc55a779108237536ea446b615f66 Author: Alan Garny '' Date: Sat Sep 9 15:04:42 2017 +0200 LLVM+Clang: upgrading to version 5.0.0 '(#1407).' commit 15cc51f48325a5303017e72f65fcfa4af8c66031 Author: Alan Garny '' Date: Fri Sep 8 15:40:45 2017 +0200 CMake: account for the new CMP0068 policy '[ci' 'skip].' commit d716194ef0a418d19d40a890f6090514a3466c9d Author: Alan Garny '' Date: Fri Sep 8 13:57:36 2017 +0200 Some minor cleaning up '(#1299).' commit 91bd04c1594c26484fe21d0fcd53afb56e1bf306 Author: Alan Garny '' Date: Fri Sep 8 13:53:36 2017 +0200 Updated our Downloads and What is New pages '(#1299).' commit 17e06ece05166687186de53160a617721d4c2939 Author: Alan Garny '' Date: Fri Sep 8 13:48:19 2017 +0200 GraphPanel widget: make use of the log scale information found in a SED-ML file '(#1299).' commit 93221fef545b1a283c4e655b4eac3f42b9127669 Author: Alan Garny '' Date: Fri Sep 8 13:26:37 2017 +0200 Some minor cleaning up. commit 7f16a351c86ce51dbb2fa3698b1ad36f494b2683 Author: Alan Garny '' Date: Fri Sep 8 13:26:09 2017 +0200 GraphPanel widget: support SED-ML files with curves that have a log scale '(#1299).' commit 40ac49abe29e88285c1b4cd997280dc754a8a421 Author: Alan Garny '' Date: Fri Sep 8 12:40:12 2017 +0200 GraphPanel widget: export to SED-ML whether a graph panel should have logarithmic axes '(#1299).' commit 0ec01cab6a6447ad5af752b01b1c7f063ded6adf Author: Alan Garny '' Date: Fri Sep 8 11:46:10 2017 +0200 GraphPanel widget: added a way to set/get the logarithmic state of an axis '(#1299).' commit 72e7315ea0b79916eb53125aba9a6562f9297b12 Author: Alan Garny '' Date: Fri Sep 8 10:53:55 2017 +0200 GraphPanel widget: optimise our log axes '(#1299).' commit 4022d47287d99f28b21fa8edd614a7088c628275 Merge: b93a3ec42 c3ab4d0f3 Author: Alan Garny '' Date: Fri Sep 8 08:42:51 2017 +0200 Merge branch ''\''master'\''' into issue1299. commit c3ab4d0f3e21062b01349dc5fd171b0018f304b9 Author: Alan Garny '' Date: Fri Sep 8 08:41:44 2017 +0200 Some minor cleaning up of our third-party libraries page '[ci' 'skip].' commit b93a3ec42161319923e0dd299ce0d36e0c8f4706 Author: Alan Garny '' Date: Thu Sep 7 18:41:00 2017 +0200 GraphPanel widget: reset our axes when enabling/disabling logarithmic axes '(#1299).' commit 333ec9ee4b36954cdaf46938ff0b922713f627b8 Author: Alan Garny '' Date: Thu Sep 7 17:18:47 2017 +0200 GraphPanel widget: some minor cleaning up. commit 4290794b99cb7a6dc64904f06c928e3763555af6 Author: Alan Garny '' Date: Thu Sep 7 17:07:50 2017 +0200 GraphPanel widget: slight improvements to our 'GraphPanelPlotWidget::setAxes()' method. commit 523e2a425b00ea7d251527299c6a1e62527ad29d Author: Alan Garny '' Date: Thu Sep 7 16:19:46 2017 +0200 GraphPanel widget: reset axes when enabling/disabling logarithmic axes '(#1299).' commit 48a1e80c0bda3e847b5b2aba1e8f1fb103a6f004 Author: Alan Garny '' Date: Thu Sep 7 16:15:57 2017 +0200 GraphPanel widget: reordered our context menu '(#1299).' commit acec0a18d6b3a0aec308b2eedaf1f0a8b5628763 Author: Alan Garny '' Date: Thu Sep 7 16:13:39 2017 +0200 Slight updates to our Downloads and What is new pages. commit d9357feb21b0804a22c2e67514742a77515342ce Author: Alan Garny '' Date: Thu Sep 7 16:02:52 2017 +0200 GraphPanel widget: make sure that 'axes'\''' alignments are kept when adding a new graph panel. commit 4f357bed29aa602f752ef9dbf48e6c7116f0c6d3 Author: Alan Garny '' Date: Thu Sep 7 15:51:40 2017 +0200 GraphPanel widget: make sure that axes are updated if necessary. This actually fixes a small issue when having, for example, two graph panels and asking for the Y axis of them to be synchronised. Indeed, the Y axes $'didn\342\200\231t' get synchronised until we panned one of the graphs '(for' 'example).' commit afa60058edb631308b780d0b665edb12781dadb3 Author: Alan Garny '' Date: Thu Sep 7 14:53:33 2017 +0200 Some minor cleaning up. commit af1da557f24d7bc7889fcb91e3ea897a93f03f52 Author: Alan Garny '' Date: Thu Sep 7 11:15:37 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis '(#1299).' commit 0fa6afa85395e8dd04a359a6a9a22a8f221ba1af Author: Alan Garny '' Date: Thu Sep 7 11:04:41 2017 +0200 GraphPanel widget: make sure that axis labels are properly formatted '(#1299).' Indeed, our previous implementation would render 1e-80 as $'9.99999999999997e-81\342\200\246' commit d184c342ff27a2561f0710fcefd3c0fa880342c5 Author: Alan Garny '' Date: Thu Sep 7 11:03:42 2017 +0200 GraphPanel widget: make sure that axis labels are properly formatted '(#1299).' Indeed, our previous implementation would render 1e-80 as $'9.99999999999997e-81\342\200\246' commit 99492e03b1ed105f061c9b3dab50f147b9df7f67 Author: Alan Garny '' Date: Thu Sep 7 10:48:19 2017 +0200 'Don'\''t' rely on 'qFuzzyIsNull()' and 'qFuzzyCompare()' anymore. Indeed, to use 'qFuzzyIsNull()' '(or' something equivalent using 'qFuzzyCompare())' in 'GraphPanelPlotScaleDraw::label()' resulted in small numbers '(e.g.' '1e-100)' to be considered as zero, which is not what we want. Similarly, we simplified our 'SimulationData::isModified()' method. commit c70b71a8f2e42be76d4927e53835ae4994bf80a9 Author: Alan Garny '' Date: Thu Sep 7 10:08:59 2017 +0200 Some minor cleaning up. commit 0bae223543440ffc7b06d09ce3457b7fb50d8541 Author: Alan Garny '' Date: Thu Sep 7 10:06:22 2017 +0200 Properly use 'qFuzzyIsNull()' and 'qFuzzyCompare().' commit 43b0b5f4e3c7894556d20ae5676cde6b137a077f Author: Alan Garny '' Date: Thu Sep 7 10:05:56 2017 +0200 Some minor cleaning up. commit 796eae56d64dd1bba0fb62a02a3bbe7607fc09b9 Author: Alan Garny '' Date: Thu Sep 7 09:56:57 2017 +0200 Some minor cleaning up. commit fbd33cdde7d6bdabdeb211048d551ed3b6a8e400 Author: Alan Garny '' Date: Thu Sep 7 09:48:30 2017 +0200 Some minor cleaning up. commit 6f8d6033b6b66f575d23a630dfec4ceb501c3d8b Author: Alan Garny '' Date: Thu Sep 7 09:48:12 2017 +0200 Some minor cleaning up. commit a87f1db7eabb4864747d7cd5e1f1080ff8c22507 Author: Alan Garny '' Date: Thu Sep 7 09:47:19 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis '(#1299).' commit d1d462fad3f37f0fe6ee86d2d3e6a265daeaab85 Author: Alan Garny '' Date: Thu Sep 7 09:46:53 2017 +0200 GraphPanel widget: keep track of the axis range to optimise and make sure that it gets reoptimised when changing the scaling of an axis '(#1299).' commit 6540015420fcb1e9f0155dc970eb5967386f58b2 Author: Alan Garny '' Date: Thu Sep 7 09:44:53 2017 +0200 Some minor cleaning up. commit fb0497333179a07f7f7e5aad25e0b5f4e9c2dc4b Author: Alan Garny '' Date: Thu Sep 7 09:31:33 2017 +0200 Some minor cleaning up. commit 033e9a8bdb4e28c7c4cdf0b7bdee29bcabc2cdd5 Author: Alan Garny '' Date: Thu Sep 7 09:04:37 2017 +0200 GraphPanel widget: make sure that a plot gets redrawn when changing scaling of an axis '(#1299).' commit 1ae5e0065a346fa9f235b03602e3895d4a86fd6b Merge: 0372bd377 a71e4e8b4 Author: Alan Garny '' Date: Wed Sep 6 18:27:00 2017 +0200 Merge branch ''\''master'\''' into issue1299. commit a71e4e8b49f548eb5ff3477ce0bc75d5433408b1 Merge: 8a00e30a0 ca515481b Author: Alan Garny '' Date: Wed Sep 6 18:25:44 2017 +0200 Solvers: reference CVODES/IDAS rather than CVODE/IDA '(closes' '#1405).' commit 0372bd3773fc539234c5ae7ee4994df4d0485247 Author: Alan Garny '' Date: Wed Sep 6 18:23:33 2017 +0200 GraphPanel widget: set the linear/log scale as requested '(#1299).' Still need to do much work to ensure that the log scales are actually sound. commit a92b9cbabe38cb1b8a9c4da73db8db07d9ad11a7 Author: Alan Garny '' Date: Wed Sep 6 18:20:34 2017 +0200 Some minor cleaning up. commit 287c32f72a622fac4144397223b77ab8a3aca898 Author: Alan Garny '' Date: Wed Sep 6 17:57:52 2017 +0200 GraphPanel widget: added context menu items for supporting log scales on axes '(#1299).' commit ca515481bab6d535a97e26811546100a58d50e9b Author: Alan Garny '' Date: Wed Sep 6 15:15:01 2017 +0200 Update our downloads page '(#1405).' commit 497d70c3da387c0339ea1a4af75cabd6bbc6fa85 Author: Alan Garny '' Date: Wed Sep 6 15:11:24 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA '(#1405).' commit 1587fb5dbf22f2a12c27fa9ad0de3b71e728b6ba Author: Alan Garny '' Date: Wed Sep 6 15:10:26 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA '(#1405).' commit c8529b25c54c47cf90d6f87fdf2ff3c73c850d80 Author: Alan Garny '' Date: Wed Sep 6 15:00:35 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA '(#1405).' commit 59ff6c8166304c9fd517668f113ca83a96099f52 Author: Alan Garny '' Date: Wed Sep 6 14:08:10 2017 +0200 Solvers: some work on referencing CVODES/IDAS rather than CVODE/IDA '(#1405).' commit 8a00e30a0aa0f325e83be6ddb579d88cb0fbdd04 Author: Alan Garny '' Date: Mon Sep 4 21:12:03 2017 +0200 Slight update to our Downloads page '[ci' 'skip].' commit 46bb911c20c017e8f7ddb68b9e71ccd256b7ba63 Merge: 61fae1dca 08ba1dd87 Author: Alan Garny '' Date: Mon Sep 4 21:02:43 2017 +0200 Travis CI: use Docker with Ubuntu 16.04 LTS '(closes' '#1395).' commit 08ba1dd875c82456a1e2034477eda2bed1890096 Author: Alan Garny '' Date: Mon Sep 4 20:04:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit dc20648987a7dd37f5f89c6bf6ac7252cc7e5d48 Author: Alan Garny '' Date: Mon Sep 4 19:09:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7002fc4d7f16e0dc0593c8852fb0f9bfbba03f52 Author: Alan Garny '' Date: Mon Sep 4 18:26:55 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit e01c93fe724bd5e159c937811bac73db8459a3ad Author: Alan Garny '' Date: Mon Sep 4 18:26:24 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 28a943073cb7a56179a7898ec7c4c53920ae2efe Author: Alan Garny '' Date: Mon Sep 4 18:17:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 9886f246774cb2c3074bd8412427a94b684fe0b9 Author: Alan Garny '' Date: Mon Sep 4 18:16:52 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit ecde3e9d590c9386663c6504b4e79edad6d4915b Author: Alan Garny '' Date: Mon Sep 4 18:11:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 109b30eda0f55e0f83fdeb30cd4add0e17ec7597 Author: Alan Garny '' Date: Mon Sep 4 18:06:06 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 3e700a2b0a8f0a700e37b23c369736f16d22ccdb Author: Alan Garny '' Date: Mon Sep 4 17:59:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit f05d18701af7f39d8b60c40c98bc0c6ffcd84611 Author: Alan Garny '' Date: Mon Sep 4 17:56:35 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 39bd581f24cebed6e1bde513bb19d6bcabcac070 Author: Alan Garny '' Date: Mon Sep 4 17:53:29 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2556095bd7a92b384440c7fed86836b066e6a882 Author: Alan Garny '' Date: Mon Sep 4 17:47:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8ef5a2fd40baf8987b27be56a9bfa1b6c7aaa90a Author: Alan Garny '' Date: Mon Sep 4 17:45:38 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 03c33d7cb3be4b19c1e5c6a0f408e206a090cdca Author: Alan Garny '' Date: Mon Sep 4 17:30:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7933541bd18a3b2b14e4eb96585191796149b2c4 Author: Alan Garny '' Date: Mon Sep 4 17:22:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2ae221448d1e28a85f2c8fd3873fd0f50324eef5 Author: Alan Garny '' Date: Mon Sep 4 17:13:28 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 5cc290537f343f4e79b9bc12a264521ea33ef6fe Author: Alan Garny '' Date: Mon Sep 4 17:12:16 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit f09bb501f034601f1beff0baa3477ffd788f4f83 Author: Alan Garny '' Date: Mon Sep 4 17:10:02 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 4874b6327a46de222c3604652471ec22fbd0efc9 Author: Alan Garny '' Date: Mon Sep 4 16:40:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit e38b57d6d22d134a010ed19a3351a03e662c4639 Author: Alan Garny '' Date: Mon Sep 4 16:36:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit f5c98f873bd1310357f023e4fcfda4a7c53d6d08 Author: Alan Garny '' Date: Mon Sep 4 15:52:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit b4aff3508a3178b0c598378873e53cc896bc4358 Merge: 3f5696a2c 61fae1dca Author: Alan Garny '' Date: Mon Sep 4 15:44:20 2017 +0200 Merge branch ''\''master'\''' into issue1395. commit 61fae1dca2c5c2a0cd26394f907f1843dbb762b1 Merge: e079c8e8d d1d2c3efd Author: Alan Garny '' Date: Mon Sep 4 14:46:50 2017 +0200 Updated our copy of QtSingleApplication. commit d1d2c3efd1597f5bbd442b1d8753e87226ff7f6e Merge: 14886208c e079c8e8d Author: Alan Garny '' Date: Mon Sep 4 13:01:48 2017 +0200 Merge branch ''\''master'\''' into cleaningup. commit e079c8e8dacf684bf82fa1dcf14813cddbeb4ca7 Merge: f809388fa 0ed362afe Author: Alan Garny '' Date: Mon Sep 4 12:38:39 2017 +0200 KaTeX: upgraded to version 0.8.3 '(closes' '#1401).' commit 0ed362afe74fa5a4d04e402b1ff96ff2b592dd8c Author: Alan Garny '' Date: Mon Sep 4 11:27:19 2017 +0200 Updated our downloads page '(#1401).' commit 14886208cf3c7f863974ad69fb0ad702df871fa8 Author: Alan Garny '' Date: Mon Sep 4 11:23:33 2017 +0200 Slight update to our copy of QtSingleApplication. commit e5d3ff327c4305d54f49e7d06e38843b7f3d5d6a Author: Alan Garny '' Date: Mon Sep 4 11:18:30 2017 +0200 Slight update to our copy of QtSingleApplication. commit 34728b3b068ad9c0c8780d6221282e1a03c1a6d1 Merge: 23eb5ddd6 f809388fa Author: Alan Garny '' Date: Mon Sep 4 10:46:57 2017 +0200 Merge branch ''\''master'\''' into issue1401. commit 23eb5ddd698b4d62f419bc6c37c6967e75399e7d Author: Alan Garny '' Date: Mon Sep 4 10:46:10 2017 +0200 Upgraded KaTeX to version 0.8.3 '(#1401).' commit f809388faae02ca22cd953aa637168025608d8c3 Author: Alan Garny '' Date: Mon Sep 4 10:44:24 2017 +0200 Updated the Zinc version we are using '[ci' 'skip].' commit 777b9f358b28cb71422f744d97a01c518b9b7cb4 Author: Alan Garny '' Date: Mon Sep 4 10:36:02 2017 +0200 Updated the version of our copy of the Oxygen library '[ci' 'skip].' commit ba6757a625b8c5c7a50405df85a19a913d38886f Author: Alan Garny '' Date: Mon Sep 4 10:25:36 2017 +0200 Fixed the date of our latest snapshot '[ci' 'skip].' commit ec80b53438c39713b8cc97b3b5dfcc6917d4e935 Author: Alan Garny '' Date: Mon Sep 4 10:25:20 2017 +0200 Fixed the date of our latest snapshot '[ci' 'skip].' commit 8e9a48d238c043b01e6455018a13a792cfd25ff4 Author: David Brooks '' Date: Thu Aug 24 12:19:52 2017 +1200 Optimisation: Add icon for '`constant' with 'gradient`.' commit 2b578a55db41ac129f7a0d038d75ee075c356380 Merge: a9bd5e074 5e81f5df9 Author: David Brooks '' Date: Wed Aug 16 16:56:26 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 5e81f5df95e634ea242cccd47714d57700ad14f3 Author: David Brooks '' Date: Wed Aug 16 16:55:19 2017 +1200 Python: remove unused message. commit a9bd5e074904b4ded7051c1ca5c5ff906e748f3b Merge: afc93df5b 8417b8500 Author: David Brooks '' Date: Wed Aug 16 16:52:15 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 8417b85009ec2ed4b74fca2d826def05ccc0bdb0 Author: David Brooks '' Date: Wed Aug 16 16:51:44 2017 +1200 Python: fix syntax error when non-debug build. commit afc93df5bafe3dcbf273233b6acb5fed02cd35dd Merge: a758a0725 57f3d7495 Author: David Brooks '' Date: Wed Aug 16 16:39:58 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 57f3d74955b051c3e780435ce0d4ae3203e643e1 Author: David Brooks '' Date: Wed Aug 16 16:33:52 2017 +1200 Python: use full pathname of a file when initialising a simulation. commit cd0fdc40c77d899462d85df8909220cc299f6418 Author: David Brooks '' Date: Wed Aug 16 16:32:02 2017 +1200 Python: throw an exception when a simulation fails. commit a758a0725139a49b580e0089a3f9d98618c8836e Author: David Brooks '' Date: Wed Aug 16 16:28:18 2017 +1200 Optimisation: use STAGGERED sensitivity analysis for IDAS '(instead' of 'SIMULTANEOUS).' FUTURE: this should be user selectable for solvers. commit b314d7057deda57672c8e58eda54453f51cacff6 Merge: 2a98fc86d d8688bce7 Author: David Brooks '' Date: Mon Aug 14 22:38:44 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit d8688bce771a20e6426e954cf220e0af1ac23f18 Author: David Brooks '' Date: Mon Aug 14 22:34:14 2017 +1200 Python: tidy code. commit 9b1f6833c5908a7d17e0c1a704f3d387ba2f2af4 Author: David Brooks '' Date: Mon Aug 14 22:31:06 2017 +1200 Python: throw an error if we are unable to open a simulation. commit 7a8f55fd1f7b42575006ec3c23d5f76788754571 Author: David Brooks '' Date: Mon Aug 14 22:16:53 2017 +1200 Python: throw an error if there is an error when running a simulation. commit 2a98fc86d86271f4d6f8b5af35cacc7a2a46d80c Merge: 0876e8511 6aa6dbcfb Author: David Brooks '' Date: Sat Aug 12 18:12:25 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 6aa6dbcfb9b65d262d1ad6bfd941729b55332751 Merge: 49f66a3c0 398235f96 Author: David Brooks '' Date: Sat Aug 12 17:46:19 2017 +1200 Merge branch ''\''datastore'\''' into pythonplugin commit 49f66a3c06d107c4a3b4d8ed0dde42bcf8a98927 Merge: 0c2218be4 e7811d440 Author: David Brooks '' Date: Sat Aug 12 17:45:18 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 398235f96c9aef760c700c5f82b1d126efa2a9c1 Author: David Brooks '' Date: Sat Aug 12 17:42:25 2017 +1200 DataStore: check we have a 'value'\''s' array before referencing it... commit 0c2218be4fc7da05bd192a56ad65f5f2a0054b4b Author: David Brooks '' Date: Sat Aug 12 17:35:28 2017 +1200 Python: tidy code. commit 3f5696a2c7e43f36362287141b1704888505ae53 Author: Alan Garny '' Date: Sat Aug 12 01:56:50 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2fd1b17b48902b63bde825cf25f2bfddab87b3ce Author: Alan Garny '' Date: Sat Aug 12 01:56:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2591b1e354513dd49623b9eeff0de1273ab6c734 Author: Alan Garny '' Date: Sat Aug 12 01:50:10 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit b79b42532c2704735593085884d184e555edc025 Author: Alan Garny '' Date: Sat Aug 12 01:43:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7eb279eae3261fef912a17053314eb4e417a616c Author: Alan Garny '' Date: Sat Aug 12 01:22:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 01570b68e00fe9d964b3a684625765cefc795e55 Author: Alan Garny '' Date: Sat Aug 12 01:11:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 373ae90989de15a2b26f2b642b4d3e2f1afc0aa0 Merge: 9eba9eba5 e7811d440 Author: Alan Garny '' Date: Sat Aug 12 00:52:07 2017 +0200 Merge branch ''\''master'\''' into issue1395. commit e7811d440cae62ebceffd398830ab2d223a036cb Merge: c6ed21632 1c828196d Author: Alan Garny '' Date: Sat Aug 12 00:50:09 2017 +0200 New snapshot. commit 9eba9eba561efe4436ab9305b9292460107610a9 Author: Alan Garny '' Date: Sat Aug 12 00:48:38 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7cc506912cd016edf066631d4be93e38659b4bbe Author: Alan Garny '' Date: Sat Aug 12 00:46:32 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 42380da3f7ae943f88ec4678088a945405dc4e25 Author: Alan Garny '' Date: Sat Aug 12 00:32:59 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7f614f9be024d84379c66ee55911ec00bf4cc84e Author: Alan Garny '' Date: Sat Aug 12 00:32:41 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 1a1369c5954199a632d189fb29ab53902c015733 Author: Alan Garny '' Date: Sat Aug 12 00:30:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 1c828196df151173365b670f3b0c2bf0de7b33fb Author: Alan Garny '' Date: Sat Aug 12 00:15:41 2017 +0200 Some minor cleaning up. commit 1ab33a37fc52a7bac2b6787df59107093006b02a Author: Alan Garny '' Date: Sat Aug 12 00:10:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8b35f02be4e996020b1b041f4f48529b3bf10233 Author: Alan Garny '' Date: Fri Aug 11 23:59:17 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit dea7591e7cc233de2fbc2a6b6bb26019544b62b1 Author: Alan Garny '' Date: Fri Aug 11 23:42:31 2017 +0200 Some minor cleaning up. commit 13529e6484d322598f6d174e489c2f616fa3f065 Author: Alan Garny '' Date: Fri Aug 11 23:39:03 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 1283db3dd7a27dc678091c3bb2957e11536adcfc Author: Alan Garny '' Date: Fri Aug 11 23:34:22 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 6fc2e84dccaf25ad2527870f9fc5b0437d3e1731 Author: Alan Garny '' Date: Fri Aug 11 23:23:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8d42a610a39c46e89254b9f5675f0631f759227b Author: Alan Garny '' Date: Fri Aug 11 23:10:57 2017 +0200 New snapshot. commit 320dd2953ed09c5bb36a6ab9628346e86a23175b Author: Alan Garny '' Date: Fri Aug 11 23:05:46 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 53c7c64fd5371fce3e215fc1fc35c83daaee1d60 Author: Alan Garny '' Date: Fri Aug 11 22:57:10 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 663e55adb9f0cfd739270b502353513547882368 Author: Alan Garny '' Date: Fri Aug 11 22:43:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2c3dc02298a0fa6ae2278b9a0e1034a7cfb725c4 Author: Alan Garny '' Date: Fri Aug 11 22:37:22 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit cc112543e36e79712fd0ab9034e2a318f745ec25 Author: Alan Garny '' Date: Fri Aug 11 22:31:23 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2532c38214244246fb57e20f1d54cedbbbba42a4 Author: Alan Garny '' Date: Fri Aug 11 22:26:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit ca270b8cff3900c62f239591083287f3bd91e6b4 Author: Alan Garny '' Date: Fri Aug 11 21:59:53 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8c11c4412990453e233bab74eb3f94e652c224f9 Author: Alan Garny '' Date: Fri Aug 11 21:23:09 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d57a7126780874db43771696a60a38473aee1be3 Author: Alan Garny '' Date: Fri Aug 11 21:16:42 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit b4f86f64cf91cfaa2b0ab35225e711fd76ec3e84 Author: Alan Garny '' Date: Fri Aug 11 21:09:16 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7d380c3b0e8e3e682276a48fab80feb8922cf560 Author: Alan Garny '' Date: Fri Aug 11 21:00:40 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 37076a4557b3f9637b1c04e344ff60992ac0b97e Author: Alan Garny '' Date: Fri Aug 11 20:55:50 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 9fe1dd70785462672216df423a40ea575b68ca5e Author: Alan Garny '' Date: Fri Aug 11 20:46:06 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 09f452ec7069839f9d7ecd6140096a8721241bb3 Author: Alan Garny '' Date: Fri Aug 11 20:43:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 6206d616870f6155c636536561c6719db21aee7a Author: Alan Garny '' Date: Fri Aug 11 20:17:30 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 2a38df39dfe3fddcd3e58fe5422c259de2cf2a09 Author: Alan Garny '' Date: Fri Aug 11 20:01:26 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d83659c7fad3a61c4fc758edbe6eda25d4e8682a Author: Alan Garny '' Date: Fri Aug 11 19:55:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 14fee0d517f8c16a6ff1919885a41551b35dabfe Author: Alan Garny '' Date: Fri Aug 11 19:52:09 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d646029e4fff05b81cc6956c329a8e009c92aee9 Author: Alan Garny '' Date: Fri Aug 11 19:48:24 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 3388ff62426303803c6931a35914fbfda3a6c286 Author: Alan Garny '' Date: Fri Aug 11 19:40:23 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 298f44f607cdb25542c6aa91716267163e570902 Author: Alan Garny '' Date: Fri Aug 11 17:54:35 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d9e6b04089befc943cd6b3727d29bec177676f57 Author: Alan Garny '' Date: Fri Aug 11 17:48:53 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 6b774ef44ca35ef99362ac0fd26659b56807633e Author: Alan Garny '' Date: Fri Aug 11 17:44:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8bc69bf8de45fa8ba61e7d8d0b62d45673290d91 Author: Alan Garny '' Date: Fri Aug 11 17:34:02 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 63957bdaac5b2481722477a3f70d0bec191f0be3 Author: Alan Garny '' Date: Fri Aug 11 17:25:27 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 84ef4419d01e1473e5b8015da35395a5c18ea272 Author: Alan Garny '' Date: Fri Aug 11 17:21:21 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 34bc2320fd8bcc3aa9372d887f546df955618843 Author: Alan Garny '' Date: Fri Aug 11 17:17:41 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit edf018cccb6f3c1098a0ce12373ba2474762e4a8 Author: Alan Garny '' Date: Fri Aug 11 17:14:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 4c25cfbc445310d1fadf2395e2f728aea815fb2f Author: Alan Garny '' Date: Fri Aug 11 17:09:25 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 3b576d15e52b1ff3203e7c9c587ad47ee8c5b970 Author: Alan Garny '' Date: Fri Aug 11 17:01:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d8424cb02b23c20c362ceae1a3e45bd5bd462a11 Author: Alan Garny '' Date: Fri Aug 11 16:58:45 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 5f88a78622437bfe4019c0cc08f646eacf21b3b2 Author: Alan Garny '' Date: Fri Aug 11 16:55:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit dbe5d58d56ad2b421a948478122df99309117550 Author: Alan Garny '' Date: Fri Aug 11 16:53:34 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d9df7a3143e7d80a7775bcfbf3412774a4f20b19 Author: Alan Garny '' Date: Fri Aug 11 16:52:58 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit f682be38f2a09182ba4221a0ce6750576039b56b Author: Alan Garny '' Date: Fri Aug 11 16:50:44 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8f6db3d456228a5096a409c2e9b8bc968983a8d6 Author: Alan Garny '' Date: Fri Aug 11 16:45:47 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit bd3f7ffaf70beb6627f368355b9f99c4ce0fdbee Author: Alan Garny '' Date: Fri Aug 11 16:40:00 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8651b193f82766c934d1bee76713b348d9863490 Author: Alan Garny '' Date: Fri Aug 11 16:39:43 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 77a82b4a1165095090c01640786eeceea3b3b69e Author: Alan Garny '' Date: Fri Aug 11 16:36:18 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 9efeea68c80a21e4b871aea9a79d95b9a4c8a3c0 Author: Alan Garny '' Date: Fri Aug 11 16:34:13 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 1206674c40d4e08b40ec2717de9596fdfe33ab1c Author: Alan Garny '' Date: Fri Aug 11 16:25:56 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 19dd2288ef29b31b5e4ab77c2a80eeec2a4a53ff Author: Alan Garny '' Date: Fri Aug 11 16:20:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 6063393c7664f47a3df419fbf94c786419df08c0 Author: Alan Garny '' Date: Fri Aug 11 16:20:32 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit ea95d44779ee7e39451c51927ab1b920bf2ba3ea Author: Alan Garny '' Date: Fri Aug 11 16:14:52 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 72c2a87968e266047fd469e01b33a4f326617e2e Author: Alan Garny '' Date: Fri Aug 11 16:05:39 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 71fb57921f5553e4bc93741d199e246efe5faedc Author: Alan Garny '' Date: Fri Aug 11 16:00:08 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit cc7f9a154867d7d49e89626e5e0b89a53289dcd7 Author: Alan Garny '' Date: Fri Aug 11 15:56:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit d6edbf349eb128e7f5dd498f30d11d23e058c9ad Author: Alan Garny '' Date: Fri Aug 11 15:52:12 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 7d8953de6736a7e554f19f4f86c1ca171e55637d Author: Alan Garny '' Date: Fri Aug 11 15:34:59 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 8e0040bbc2c6de6dc0ce1029b4cd5af0d4ba8ffb Author: Alan Garny '' Date: Fri Aug 11 15:31:48 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 51436fe1af209c932a96452fda03c6b41689e1a6 Merge: f74462de6 c6ed21632 Author: Alan Garny '' Date: Fri Aug 11 15:30:07 2017 +0200 Merge branch ''\''master'\''' into issue1395. commit c6ed2163214fa6a865e7f7d193f625d922e3f53c Merge: 7eca30f11 4d44db873 Author: Alan Garny '' Date: Fri Aug 11 15:27:54 2017 +0200 Zinc package: upgraded to version 3.1.2 '(#1393).' commit f74462de683e6e6b5d422bb746f4a74dff92e3b8 Author: Alan Garny '' Date: Fri Aug 11 15:26:07 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit a57105dfd1ed8a4f7a43abbc9e42c07d2550aa18 Author: Alan Garny '' Date: Fri Aug 11 15:23:19 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit b4643adfd7bc86d4b6c1bcd6bf3c916ce9b61c50 Author: Alan Garny '' Date: Fri Aug 11 15:19:12 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit e0e01508ef08c77ad39792b377e561005a183838 Author: Alan Garny '' Date: Fri Aug 11 15:16:13 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 4d44db87301dd3f0c78063088ab72b849f26f1b8 Author: Alan Garny '' Date: Fri Aug 11 14:56:38 2017 +0200 Slight update to our Downloads page '(#1393).' commit 95cab3529f555c41b86d451a5d80552342fb4587 Author: Alan Garny '' Date: Fri Aug 11 14:47:32 2017 +0200 Reenabling the building of everything '(#1393).' commit f4eb8792c8e67302fa49e1e600c28c963ea06bf1 Author: Alan Garny '' Date: Fri Aug 11 14:46:55 2017 +0200 Zinc package: updated our Windows binaries '(#1393).' commit aaca3ef5fa10912651e828838f6539277d007399 Author: Alan Garny '' Date: Fri Aug 11 14:16:11 2017 +0200 Travis CI: trying to use Docker with Ubuntu 16.04 LTS '(#1395).' commit 0d019f1c3be48258e47fe9d79cfa3b6191575e15 Author: Alan Garny '' Date: Fri Aug 11 13:00:51 2017 +0200 Zinc package: updated our Linux and macOS binaries '(#1393).' commit e87ba012fbd95ef6148f3c2f5b77c135853be781 Merge: 008ecd41c 7eca30f11 Author: Alan Garny '' Date: Fri Aug 11 12:58:12 2017 +0200 Merge branch ''\''master'\''' into issue1393. commit 008ecd41c31d7f8541f779030c582de6359a454d Author: Alan Garny '' Date: Fri Aug 11 12:54:55 2017 +0200 Zinc package: updated the version to 3.1.2 '(#1393).' commit 851d49f4d39310d5e004d634eec30e06239f20f9 Author: Alan Garny '' Date: Fri Aug 11 12:54:27 2017 +0200 Get ready to build our Zinc package '(#1393).' commit 7eca30f1165133ea2c827a692c09cb74f5d4b9c4 Merge: a9c18e2df 145ce68a5 Author: Alan Garny '' Date: Fri Aug 11 11:51:48 2017 +0200 CSV data store: make sure that we can export to a '(really)' big CSV file '(closes' '#1394).' commit 57c2529f0cf2212a2b97a2a348b6d1ea901257d1 Author: Alan Garny '' Date: Fri Aug 11 11:48:55 2017 +0200 Reenabling the building of everything '(#1393).' commit f1adc51efbdf1fb321df833f4aba2ce8c5eea399 Author: Alan Garny '' Date: Fri Aug 11 11:47:39 2017 +0200 Zinc package: reenabling some tests '(#1393).' commit 8adb06546ca2a462402cc6f9300d9f9415221733 Author: Alan Garny '' Date: Fri Aug 11 11:34:47 2017 +0200 Get ready to build our Zinc package '(#1393).' commit 145ce68a583eabacf66f6405949d9e2fc3feff8c Author: Alan Garny '' Date: Fri Aug 11 11:25:53 2017 +0200 Slight updates to our downloads and what is new pages '(#1394).' commit 0fa63bdc4b21e83b7c2c490dbdb24f8a06ef32f9 Author: Alan Garny '' Date: Fri Aug 11 11:17:36 2017 +0200 CSV data store: make sure that we can export to a '(really)' big CSV file '(#1394).' commit a9c18e2df09ba36db512b0341f5a92c35783b291 Merge: d439eeca8 70e289499 Author: Alan Garny '' Date: Fri Aug 11 10:52:27 2017 +0200 Linux: rebuilt all our third-party libraries '(closes' '#1391).' commit 70e289499b12c63e7593f7a3f382d89b9c00848c Author: Alan Garny '' Date: Fri Aug 11 10:24:33 2017 +0200 Travis CI: temporarily '(hopefully)' disable building and running our tests on Linux '(#1391).' Indeed, to build our tests on Linux keeps failing. It might due to a discrepancy between Ubuntu 14.04 LTS '(which' is used on Travis 'CI)' and Ubuntu 16.04 LTS, which we now use for building OpenCOR. commit ec7d4e6fcc272864dc8c1b95c88f2c53cac05b05 Author: Alan Garny '' Date: Fri Aug 11 10:07:38 2017 +0200 Travis CI: temporarily '(hopefully)' disable building and running our tests on Linux '(#1391).' Indeed, to build our tests on Linux keeps failing. It might due to a discrepancy between Ubuntu 14.04 LTS '(which' is used on Travis 'CI)' and Ubuntu 16.04 LTS, which we now use for building OpenCOR. commit 32e5067b4bed035ce755289f3eaa0141437c2561 Author: Alan Garny '' Date: Fri Aug 11 10:00:52 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 920f991599ba23b12726b600f1c092cd165ebb0e Author: David Brooks '' Date: Fri Aug 11 19:09:41 2017 +1200 Python: allow for a DataStoreVariable not having a DataStoreArray allocated. commit ba21b4ad3815b5c9ca663ba0ead555b1027a48e0 Author: David Brooks '' Date: Fri Aug 11 19:07:31 2017 +1200 Python: update displayed values in simulation information widget when settings are changed in Python. commit 07c2d2675816838fcc23dcf69d40f760193ccdac Author: David Brooks '' Date: Fri Aug 11 16:25:11 2017 +1200 Python: specify dependency for DataStore plugin. commit cef211ea8c704df09f33ad67a3ba6f46c94d2739 Author: David Brooks '' Date: Fri Aug 11 16:24:15 2017 +1200 Python: support plugin now needs to directly link to the Python plugin. commit 55a8b640b16057dce9d4e4ae1f9b9fb040889dc2 Merge: 486d2922e 209230b2d Author: David Brooks '' Date: Fri Aug 11 15:26:41 2017 +1200 Merge branch ''\''pythonplugin'\''' into valuedict commit 8f746aa9c5ba7f0c1a4473202dad085f2b6bcef7 Author: Alan Garny '' Date: Thu Aug 10 23:39:09 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 33e11e1b042bdf72f9728585f35188307dab27f2 Author: Alan Garny '' Date: Thu Aug 10 23:30:10 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 4b7fb761ad5d61c986a4075bcb14e4cdbe18d392 Author: Alan Garny '' Date: Thu Aug 10 23:11:26 2017 +0200 Some minor cleaning up. commit 57b0001aad6d919671618456dd042714b9e29d90 Author: Alan Garny '' Date: Thu Aug 10 21:38:38 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 227480cc387986e93c2b1a19b0163945f9de942e Author: Alan Garny '' Date: Thu Aug 10 21:37:10 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 6ee0d34d117609e4629f79664af5ff766419cbfa Author: Alan Garny '' Date: Thu Aug 10 21:30:25 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x '(#1391).' commit dabe8abec2e0081be47f7e948a2a652b084c7074 Author: Alan Garny '' Date: Thu Aug 10 21:24:53 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x '(#1391).' commit 6254f34a34eb892e23820d3fe00c5bfa6c1cf7c6 Author: Alan Garny '' Date: Thu Aug 10 21:16:27 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x '(#1391).' commit a7f7919b5a4388d5ea2bbff6dabf672ed49a52ce Author: Alan Garny '' Date: Thu Aug 10 19:58:59 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 95f67df5d9a1337d42d7364106f4b5c108b46d9f Author: Alan Garny '' Date: Thu Aug 10 19:58:07 2017 +0200 Travis CI: trying not to use GCC/G++ 5.x '(#1391).' That really ought not to 'work!' commit 0d46c88c5a54d0fd1f073f07fa13f4d33db42b6a Author: Alan Garny '' Date: Thu Aug 10 19:51:12 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit bc2d8ed1390f7307fd139610cbee7247523d3b70 Author: Alan Garny '' Date: Thu Aug 10 19:50:06 2017 +0200 Ok, removing some RPath information on Linux 'wasn'\''t' a good 'idea!' '(#1391)' commit d1c454580f400c8280df503d9078e2632b6bae12 Author: Alan Garny '' Date: Thu Aug 10 19:48:38 2017 +0200 Trying to remove some RPath information on Linux '(#1391).' commit eb6b6180ee0164ac0cdb651eee949c97f810d9dc Author: Alan Garny '' Date: Thu Aug 10 19:44:56 2017 +0200 Trying to remove some RPath information on Linux '(#1391).' commit 893348195e1bec7dd4839354b32cd1430fff266c Author: Alan Garny '' Date: Thu Aug 10 19:41:13 2017 +0200 Trying to remove some RPath information on Linux '(#1391).' I get the feeling that it might not be $'needed\342\200\246' commit c3a3853489407ed26d17d0f744fc22c737c7eb3b Author: Alan Garny '' Date: Thu Aug 10 19:29:46 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 0d5c089b69c6a84bc8690b814bf293b5aa846007 Author: Alan Garny '' Date: Thu Aug 10 19:17:32 2017 +0200 Plugin tests: make sure that their external dependencies are set in the same way as for their corresponding plugins '(#1391).' Who know, that might explain why things $'don\342\200\231t' work on Travis 'CI?!' commit 7e885952a749fa68992e66bd665b3d9bb4154ca0 Author: Alan Garny '' Date: Thu Aug 10 19:14:57 2017 +0200 Some minor cleaning up. commit fcbdbac21107b0a93e995515fcf884ab3883c3e8 Author: Alan Garny '' Date: Thu Aug 10 18:26:14 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 5c9d6c038868ae2397d3c23bee9749a55c8b5484 Author: Alan Garny '' Date: Thu Aug 10 18:23:37 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit d098a5d35b6c6d2541ac9b40679272c3986802c1 Author: Alan Garny '' Date: Thu Aug 10 18:20:56 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 942c13e9cc44609f6204ec18f0b1c640b5eeabbd Author: Alan Garny '' Date: Thu Aug 10 18:07:27 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 675bbf6bc4ccc6834ca98d195804e4ec6bfdaf57 Author: Alan Garny '' Date: Thu Aug 10 17:58:37 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit a10306d089a2b15f2c16c3715930661b910c278a Author: Alan Garny '' Date: Thu Aug 10 17:47:15 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit ce24071a112dafee03b30cbc9afdff823e7958bf Author: Alan Garny '' Date: Thu Aug 10 17:22:44 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit b1a9ba356bf9a328e2efe063d7220357ae45d7d7 Author: Alan Garny '' Date: Thu Aug 10 16:56:36 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 557325c5f1697620cce9d92bcad42f601fd13522 Author: Alan Garny '' Date: Thu Aug 10 16:45:59 2017 +0200 Reverted part of commit abacefc '(oops!)' '(#1391)' '[ci' 'skip].' commit 4fd001935b733b39a59388be82ecfa18059162a5 Author: Alan Garny '' Date: Thu Aug 10 16:40:11 2017 +0200 Travis CI: trying to understand that GCC/G++ issue on Ubuntu '(#1391).' commit 894b963fa0cea1577fffd660d1b20b9b29a7579a Author: Alan Garny '' Date: Thu Aug 10 16:12:16 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=1 makes any difference '(#1391).' commit abacefc65ac60302d0125e1b380d9d92d11204e3 Author: Alan Garny '' Date: Thu Aug 10 15:48:42 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=0 makes any difference '(#1391).' commit 6d82c517d110b353e7dd9af3556ae587b9667010 Author: Alan Garny '' Date: Thu Aug 10 15:42:03 2017 +0200 Travis CI: see whether defining _GLIBCXX_USE_CXX11_ABI=0 makes any difference '(#1391).' commit 87eb138b77baf0d2f05cdf5c2cd864b4257f8966 Author: Alan Garny '' Date: Thu Aug 10 15:08:07 2017 +0200 Travis CI: well, no Ubuntu 16.04 LTS available, so reverting to Ubuntu 14.04 LTS and see what we can do with it '(#1391).' See https://travis-ci.org/opencor/opencor/jobs/263072654, although we asked for the xenial distribution, Travis CI $'doesn\342\200\231t' know about it and therefore went for its current default distribution, which is trusty. commit d3ba50f7fa82e6000137ba207919f41d234c3b4b Author: Alan Garny '' Date: Thu Aug 10 14:52:57 2017 +0200 Updated our SBML and SED-ML API packages '(#1391).' Indeed, our SBML API package $'didn\342\200\231t' have support for bzip2, which we need '(for' our tests, if 'anything).' Now, because our SED-ML API package depends on our SBML one, we also updated it just to be on the safe side. commit dbf0b5a64e89c2e36233c046410c85f7be36ac4f Author: Alan Garny '' Date: Thu Aug 10 14:48:08 2017 +0200 Travis CI: check whether there is an Ubuntu 16.04 LTS machine that we could use '(#1391).' Indeed, we now build everything on Ubuntu 16.04 LTS '(Xenial),' so to rely on Ubuntu 14.04 LTS '(Trusty)' is not really an option anymore '(it' breaks 'things;' see 'https://travis-ci.org/opencor/opencor/jobs/263037249).' commit 0a3a16d677dbdb8d5a466366d0cb2a5fcdcfa58c Author: Alan Garny '' Date: Thu Aug 10 14:18:08 2017 +0200 Zinc package: slight update to our tests until we formally upgrade to Zinc 3.1.2 '(#1391)' '[ci' 'skip].' commit 8e2e9234fd490dc982540671a7a13a964d1445d4 Author: Alan Garny '' Date: Thu Aug 10 13:36:29 2017 +0200 Some minor cleaning up '(#1391)' '[ci' 'skip].' commit d623ac928b642103fc02c80c58f94fdff14e7ef2 Author: Alan Garny '' Date: Thu Aug 10 13:01:23 2017 +0200 Updated our QtWebKit package '(#1391).' commit 346453d4e7c0fcdc140531329c7ad516ced4827b Merge: 4d824deba e0798651b Author: Alan Garny '' Date: Thu Aug 10 11:00:53 2017 +0200 Merge pull request '#3' from dbrnz/issue1391. commit e0798651bb74b76c1d3c84dd9cc5d8bb2a586097 Author: David Brooks '' Date: Thu Aug 10 20:54:31 2017 +1200 Linux: rebuild BioSignalML libraries for GCC 5.4 '(#1391)' commit 209230b2d009be47876ab3e9274eb15bf5ad9df6 Author: David Brooks '' Date: Thu Aug 10 20:48:54 2017 +1200 Python: update packages for GCC 5.4 '(#1391)' commit 805d8c8b5b4722b754207f582106b92f9db6e2cc Author: David Brooks '' Date: Thu Aug 10 20:47:39 2017 +1200 Python: 'don'\''t' check whether the memory associated with a simulation can be allocated '(#1389)' commit bc4035234811057f9598fe0bf174572977c0760d Author: David Brooks '' Date: Thu Aug 10 20:45:37 2017 +1200 Python: other plugins in fact depend on Python packages having been installed. commit 4d824deba41306652229aa4c5faef2fb315c34d0 Author: Alan Garny '' Date: Thu Aug 10 10:36:14 2017 +0200 QtWebKit package: make sure that our generated CMake files are properly patched '(#1391).' commit 389c232b2b88a50ea59ce890625af543376ead90 Author: David Brooks '' Date: Thu Aug 10 14:20:19 2017 +1200 Python: tweak name of PythonQt API build. commit a2a1b85496f1b3670a9be14bd04a9cc4f885bf2c Author: David Brooks '' Date: Thu Aug 10 14:19:36 2017 +1200 Python: dependencies of plugins using Python headers are on package builds, not the Python plugins. commit 27cddfef5fe7dc5dabc68845c067c8b428c06add Author: David Brooks '' Date: Thu Aug 10 13:58:56 2017 +1200 Linux: rebuild BioSignalML libraries for GCC 5.5 '(#1391).' commit 9cc1901510221d81433aae32faeea9ec872d5ba7 Author: Alan Garny '' Date: Wed Aug 9 19:48:25 2017 +0200 Updated our LLVM+Clang package '(#1391).' commit 00d64b9f3aed180c23a50b03dbb31a57267f3787 Author: Alan Garny '' Date: Wed Aug 9 17:35:22 2017 +0200 Updated our Zinc package '(#1391).' commit c9ae45eb7a4f0d24cf36509b659977e8232e673e Author: Alan Garny '' Date: Wed Aug 9 16:40:36 2017 +0200 Updated our QScintilla and Qwt packages '(#1391).' commit cde844ee6d4da819265da5995f4f8a1ad54af9ac Author: Alan Garny '' Date: Wed Aug 9 16:31:41 2017 +0200 Updated our SUNDIALS and zlib packages '(#1391).' commit e2f1d3a3adf55d01e4decb8e84bd4ff26b68ff34 Author: Alan Garny '' Date: Wed Aug 9 16:25:39 2017 +0200 Updated our OpenSSL package '(#1391).' commit 4225d712117a0c099574fd8c74e1b4624d704709 Author: Alan Garny '' Date: Wed Aug 9 16:20:47 2017 +0200 Updated our LibXDiff and OAuth packages '(#1391).' commit e4ca80b4d6008709b1eb789602bf7e10da507c27 Author: Alan Garny '' Date: Wed Aug 9 16:13:41 2017 +0200 Updated our libigt2 package '(#1391).' commit 7ff0ff0a775d01d4a4febb9851a45f020976590f Author: Alan Garny '' Date: Wed Aug 9 16:01:37 2017 +0200 Temporarily disable BioSignalML-related plugins '(#1391).' commit 194aa77968cc2ff21d2b3b9cdffb6ab56c76566f Author: Alan Garny '' Date: Wed Aug 9 15:54:29 2017 +0200 Updated our SED-ML API package '(#1391).' commit 23ebd4b1f35e4114708f4937aa5f8c1ba8a87b87 Author: Alan Garny '' Date: Wed Aug 9 15:52:23 2017 +0200 Updated our SBML API package '(#1391).' commit f250a9f978b932de4b28b55491a9fffcaf155fcb Author: Alan Garny '' Date: Wed Aug 9 15:47:28 2017 +0200 Updated our CellML API package '(#1391).' commit ecda324f7020ca18fc60d211ad2610242a7f6c15 Author: Alan Garny '' Date: Wed Aug 9 15:28:08 2017 +0200 Updated our QtWebKit package '(#1391).' commit 4d2032c9b6a46e3fff24ef17e9fca7fbc1578a85 Merge: 81b4299f9 d439eeca8 Author: Alan Garny '' Date: Wed Aug 9 13:59:09 2017 +0200 Merge branch ''\''master'\''' into issue1391. commit d439eeca8c076c646ff2302825511adb35167a22 Author: Alan Garny '' Date: Wed Aug 9 13:56:53 2017 +0200 Oxygen: removed a file '(not' part of Oxygen '5.36.0)' '[ci' 'skip].' commit 81b4299f9612284c9f846aecabe9ff897d6f1212 Merge: 93af7a813 2d195d01c Author: Alan Garny '' Date: Wed Aug 9 13:06:05 2017 +0200 Merge branch ''\''master'\''' into issue1391. commit 93af7a81363d18944c834d9b5e7d44800e4d381e Author: Alan Garny '' Date: Wed Aug 9 13:04:41 2017 +0200 Slight update to our QtWebKit readme file '(#1391).' commit 2d747ba0c7c97d329ade10f17622d6d1f8dc0547 Author: Alan Garny '' Date: Wed Aug 9 11:42:17 2017 +0200 Updated our Mesa package '(#1391).' commit 2d195d01c3525fdc12502cff9954ac7c05cee36e Author: Alan Garny '' Date: Wed Aug 9 10:50:09 2017 +0200 Oxygen: removed a file '(not' part of Oxygen '5.36.0)' '[ci' 'skip].' commit 8ae9f310e07fb87be9b8481b484028d94cee2844 Author: Alan Garny '' Date: Wed Aug 9 10:43:55 2017 +0200 Slight update to our third-party page '[ci' 'skip].' commit 5a57f416be82b7d84fefefde4811303b2e0fc734 Author: Alan Garny '' Date: Wed Aug 9 09:49:12 2017 +0200 cmake/patchcmake.c: make sure it builds fine using GCC/G++ 5.x '(#1391).' commit c9ae35549edee92a3de856865b62a03d9d7d6bc7 Author: Alan Garny '' Date: Wed Aug 9 09:23:46 2017 +0200 CMake: USE_PREBUILT_MESA_PACKAGE should only be available on Linux. commit 486d2922ea682489a952c246bec803ee9df2ff37 Author: David Brooks '' Date: Wed Aug 9 13:35:08 2017 +1200 WIP: track data store variable in a values dictionary. commit f4bb5c35a8305198054e01fa2d1252e59bdf0629 Merge: 938bf1042 df859dc79 Author: Alan Garny '' Date: Tue Aug 8 23:31:47 2017 +0200 Simulation Experiment view: 'don'\''t' check whether the memory associated with a simulation can be allocated '(closes' '#1389).' commit df859dc79a8fc2ec5461da9d850ce0b8b63606c1 Author: Alan Garny '' Date: Tue Aug 8 18:32:49 2017 +0200 Slight update to our What is New page '(#1389).' commit 96da0dae0be7720c6e9b59bed52b556ea8ae522c Author: Alan Garny '' Date: Tue Aug 8 18:17:11 2017 +0200 Slight update to our downloads page '(#1389).' commit b01fe2d2bbd1b58e608ec91d14195a65290d6b1b Author: Alan Garny '' Date: Tue Aug 8 18:15:35 2017 +0200 Simulation Experiment view: 'don'\''t' check whether the memory associated with a simulation can be allocated '(#1389).' commit 938bf1042f2108602b1c9fa647920db60cc3fde7 Merge: e035a2897 d846b5234 Author: Alan Garny '' Date: Tue Aug 8 16:59:34 2017 +0200 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file '(closes' '#1385).' commit d846b5234fa1554ae693056fff0279d8f5b485a9 Author: Alan Garny '' Date: Tue Aug 8 16:14:10 2017 +0200 Reverting our File Handling interface '(#1385).' commit 51058d92c97a47a4a48d81a9868cda4e6268f11e Author: Alan Garny '' Date: Tue Aug 8 16:04:36 2017 +0200 Updated our downloads pages '(#1385).' commit 2a6a1f0a193cf3204c55ac99d846d31f46f62e47 Author: Alan Garny '' Date: Tue Aug 8 16:02:48 2017 +0200 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file '(#1385).' commit ca51ce363dae89354845af96eb0c857d5fa86654 Author: Alan Garny '' Date: Tue Aug 8 14:42:21 2017 +0200 Some minor cleaning up. commit c933d94d977f23c7c31876f204a554e1df7b4483 Author: Alan Garny '' Date: Tue Aug 8 14:08:19 2017 +0200 Reverting our File Handling interface '(#1385).' commit 0876e8511b7bbc7f76b09326774d75a936715acb Author: David Brooks '' Date: Tue Aug 8 19:17:27 2017 +1200 Optimisation: improve initialisation and error checking. commit b5d80624186c864e9e0a423ce3c2b563cff969bd Merge: 7d3a186e6 2cfee0118 Author: David Brooks '' Date: Tue Aug 8 19:03:24 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 2cfee01183d206fc2088bcbaca77dc17afdb2731 Author: David Brooks '' Date: Tue Aug 8 18:46:40 2017 +1200 Python: return result of simulation run. commit 9091fb9a57ed99ca9c9bc1fab74b1659c2ab893e Author: David Brooks '' Date: Tue Aug 8 09:35:14 2017 +1200 Python: wait for a simulation to finish running before returning from '`run()`.' commit 7d3a186e6c3e3552e9c000d07788a321cbb69490 Merge: ceca9c5d0 3951f830a Author: David Brooks '' Date: Tue Aug 8 09:37:02 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 3951f830a7232a819c67c8cbc5f694bb94b84a96 Author: David Brooks '' Date: Tue Aug 8 09:35:14 2017 +1200 Python: wait for a simulation to finish running before returning from '`run()`.' commit ceca9c5d09cc2bed28c591465dc44b65afc9e061 Merge: f04837bbd c5affd7e4 Author: David Brooks '' Date: Mon Aug 7 15:24:00 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit c5affd7e433a1f588c1c4422964f9014258fd375 Merge: 50fb68700 e035a2897 Author: David Brooks '' Date: Mon Aug 7 15:22:59 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit f04837bbd97ba66fbba0dc912beaed0a154014aa Author: David Brooks '' Date: Mon Aug 7 15:21:16 2017 +1200 Optimisation: reinitialise CVode sensitivity analysis when reinitialising CVode. commit 3bb6770eb9cb802b841163182871460d3a38cd70 Author: David Brooks '' Date: Mon Aug 7 15:20:16 2017 +1200 Optimisation: enable and use IDA sensitivity analysis. commit e035a289774080e79cf7c0e3361343275422a1d2 Merge: 0c997886e f092875c3 Author: Alan Garny '' Date: Sun Aug 6 11:06:05 2017 -0300 make sure that we can find the plugin ''\''xcb'\''' on some Linux machines '(closes' '#1383).' commit f092875c3311bb3459fef9be4e66d7501ab4b28f Author: Alan Garny '' Date: Sun Aug 6 10:25:30 2017 -0300 Slight update to our Linux prerequisites '(#1383).' commit 897bfd82d51769cbb04fb38cbb7ff92e8eb88d37 Author: Alan Garny '' Date: Fri Aug 4 22:19:28 2017 -0300 Dropping our support for Ubuntu 14.04 LTS to 15.10 '(#1383).' commit c3994736dca01d613264ce1ccb384f399b7a08b8 Author: David Brooks '' Date: Fri Aug 4 21:30:50 2017 +1200 Optimisation: default action is to calculate gradients. commit 428488cebc12364396ac1140e32c4146d0745fcc Author: David Brooks '' Date: Fri Aug 4 20:30:41 2017 +1200 Optimisation: allow Python to set 'gradients'\''' calculation flag and run sensitivity analysis simulations. commit 61e6081144c3b68fbf7874b1324864488a024205 Author: David Brooks '' Date: Fri Aug 4 13:56:27 2017 +1200 Optimisation: only store gradients if we have a 'gradients'\''' data store... commit bb7c5da277045a605e72e0cb2bbdd457d70459db Author: David Brooks '' Date: Fri Aug 4 13:54:56 2017 +1200 Optimisation: gradients are of state variables wrt constant parameters. commit 3e99107a9583f1271e80c2493ffcb092f22cfa69 Merge: 2d3f8c2f2 50fb68700 Author: David Brooks '' Date: Thu Aug 3 17:29:45 2017 +1200 Merge branch ''\''pythonplugin'\''' into python_opt commit 50fb68700c98c04db6929b7392ec378447ea4b77 Author: David Brooks '' Date: Thu Aug 3 17:29:09 2017 +1200 Python: tidy simulation support wrapping code. commit f643efb8f8693f71026ea706cf4eef119e224683 Author: David Brooks '' Date: Thu Aug 3 17:28:42 2017 +1200 Python: a DataStore might not have a '`voi`.' commit a24eea98feb034aff9fa2ab5c787c961372526e2 Merge: d77bf442d 0c997886e Author: David Brooks '' Date: Thu Aug 3 17:23:18 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 2d3f8c2f2e58f48e195b68ff63e54ffb9f922438 Author: David Brooks '' Date: Thu Aug 3 17:18:48 2017 +1200 Optimisation: save gradient values and make available to Python. commit f052d9608e58242daeeec76a301bd026d1642398 Author: David Brooks '' Date: Thu Aug 3 15:49:51 2017 +1200 Optimisation: initialise array pointer... commit db7982b8c517854cd60657757586959127abddb4 Author: David Brooks '' Date: Thu Aug 3 15:05:23 2017 +1200 Optimisation: use the sensitivity analysis solver. commit 8662978015a6c4b7eebcead477c80150b3f328a6 Author: David Brooks '' Date: Thu Aug 3 15:04:49 2017 +1200 Optimisation: allocate array and data store to hold sensitivity gradients. commit 856fd63fb8410db1f5057e8c5801d46d045490c2 Author: David Brooks '' Date: Thu Aug 3 15:03:49 2017 +1200 Optimisation: tidy solver interface initialisation code. commit 641f2c7f62de9b79f087422b7ef89a9c23a1f038 Author: Alan Garny '' Date: Wed Aug 2 22:26:58 2017 -0300 Now require GCC/G++ 5.x on Linux '(#1383).' commit 3892c4a246fc6fed78a7f82c228b42aadc1999b6 Author: Alan Garny '' Date: Wed Aug 2 14:39:08 2017 -0300 Now require GCC/G++ 5.x on Linux '(#1383).' commit bcf98cbb55d7527a3c7a80c9c420176e58aea8f5 Author: Alan Garny '' Date: Wed Aug 2 14:09:20 2017 -0300 Revert '"Make' sure that we can find the plugin '"xcb"' on some Linux machines '(#1383)."' This reverts commit 13f50808d06288818c9921b17350221e801f2a15. commit d37b5d16b5f20fd1111e447c2618ec1d90fb1aba Author: Alan Garny '' Date: Wed Aug 2 11:59:42 2017 -0300 Updated our downloads pages '(#1383).' commit 13f50808d06288818c9921b17350221e801f2a15 Author: Alan Garny '' Date: Wed Aug 2 11:50:20 2017 -0300 Make sure that we can find the plugin '"xcb"' on some Linux machines '(#1383).' commit b24dd5e16c32d1ebb431186f456f88fa62e8a488 Author: Alan Garny '' Date: Wed Aug 2 11:46:20 2017 -0300 Revert '"Updated' our known limitations page '(#1383)."' This reverts commit 9ea4a2357f7124e4ab3a0680c988eebf9950d99d. commit b588ca4aaf051fbc9021a7a37ee3c838a32f3c64 Author: Alan Garny '' Date: Wed Aug 2 11:46:16 2017 -0300 Revert '"Updated' our downloads pages '(#1385)."' This reverts commit 0a407a5af5931c56ac87209bc87eef08bed93fea. commit 7c0f1d8b0712b1fa1367292ae71261021a45c119 Author: Alan Garny '' Date: Wed Aug 2 11:45:59 2017 -0300 Revert '"Simulation' Experiment view: make sure that the runtime gets updated after having edited a CellML file '(#1385)."' This reverts commit 85224532d79ccd1df5e21e3448fd47a4da8679ab. commit 9ea4a2357f7124e4ab3a0680c988eebf9950d99d Author: Alan Garny '' Date: Tue Aug 1 15:41:22 2017 -0300 Updated our known limitations page '(#1383).' commit 0a407a5af5931c56ac87209bc87eef08bed93fea Author: Alan Garny '' Date: Tue Aug 1 15:40:43 2017 -0300 Updated our downloads pages '(#1385).' commit 85224532d79ccd1df5e21e3448fd47a4da8679ab Author: Alan Garny '' Date: Tue Aug 1 15:18:34 2017 -0300 Simulation Experiment view: make sure that the runtime gets updated after having edited a CellML file '(#1385).' commit 0c997886e42904bec9f34bbd339095eb2a99fe86 Author: Alan Garny '' Date: Tue Aug 1 10:36:27 2017 -0300 Some minor cleaning up '[ci' 'skip].' commit a0ffcf62892e042d6ca5da3936f1028cb60a7957 Merge: 08022e87e 422bbfc3b Author: Alan Garny '' Date: Tue Aug 1 10:34:54 2017 -0300 New snapshot. commit 5914af02e0c7537361e2a1ea0fbd9b7101a4a97d Author: David Brooks '' Date: Sun Jul 30 12:46:40 2017 +1200 Optimisation: add sensitivity analysis to the CVode solver. commit 84412bfc1a385304eaa994a688f5a45a48092c71 Author: David Brooks '' Date: Sun Jul 30 11:43:33 2017 +1200 Optimisation: track indices of constants having gradients calculated. commit d77bf442da75a10d3b1f7fd4d4199fe7a0020547 Author: David Brooks '' Date: Sun Jul 30 11:22:08 2017 +1200 Tidy code: use a better name for some '`SimulationResults`' methods. commit 561bf8175a433e5841dfdc429e5952500b312cdf Author: David Brooks '' Date: Thu Jul 27 15:26:37 2017 +1200 Python: rename '`PythonQtSupport`' plugin to '`PythonSupport`.' commit 80f693ac787e055317ac009ae46fb5485a7603a7 Author: David Brooks '' Date: Thu Jul 27 15:03:27 2017 +1200 Add missing '`Simulation::fileName()`;' fix name of include. commit 3ef2a37e005f64900e40aee5260cc20c08da73ff Merge: 08022e87e dc8272ed2 Author: David Brooks '' Date: Thu Jul 27 13:49:48 2017 +1200 Merge branch ''\''pythonplugin'\''' into python-simlib commit 422bbfc3b4379b99bded2e669b4eea65b41ccd12 Author: Alan Garny '' Date: Sun Jul 23 17:52:23 2017 +0200 New snapshot. commit 08022e87ebcbc78b2a679d972248552d74eaf9ec Merge: 7df26a6ca cb9f992c5 Author: Alan Garny '' Date: Sat Jul 22 04:32:03 2017 +0200 Added a simulation support plugin '(to' separate out running of a simulation from its 'widget)' '(closes' '#1266).' commit cb9f992c5c928cf1afcf0837e945e10c78435c54 Author: Alan Garny '' Date: Sat Jul 22 04:01:15 2017 +0200 Make sure that our Sample view plugin properly handles our new file handling interface '(#1266).' commit c30183ebebfc8a11d56aaab41776b2873ec4bb44 Author: Alan Garny '' Date: Sat Jul 22 03:49:18 2017 +0200 Slight update to our downloads page '(#1266).' commit bad3d87807c7c96290f0229d18f4fb3d8cd99bb1 Author: Alan Garny '' Date: Sat Jul 22 03:44:42 2017 +0200 Simulation support: can now safely save/save as, and reload a file '(#1266).' commit 4c057abc9c311af106386357660fefd8a4dbb727 Author: Alan Garny '' Date: Sat Jul 22 00:19:16 2017 +0200 Simulation Experiment view: take advantage of our new simulation manager '(#1266).' commit 2635429cc435075a823153df962fd43d0c1b2b5f Author: Alan Garny '' Date: Sat Jul 22 00:11:25 2017 +0200 Simulation support: added a simulation manager '(#1266).' commit ea7e41b04bf880abc97e0f7f5420c798f4475e36 Author: Alan Garny '' Date: Fri Jul 21 23:16:26 2017 +0200 Simulation support: we need our Simulation object to have its runtime defined before we can craete its data and results '(#1266).' commit 2e27c7db82e2bccb585133539b49a50b872b477a Author: Alan Garny '' Date: Fri Jul 21 22:12:24 2017 +0200 Make sure that we can build on Windows '(#1266).' commit c60c9dd05eef3881cc706df2eaba58bf33c8490b Author: Alan Garny '' Date: Fri Jul 21 21:46:40 2017 +0200 Simulation support: our Simulation class can now retrieve some information about its file '(#1266).' commit 76efb6f5539099f4dec81d4b70229f6d357d98cc Author: Alan Garny '' Date: Fri Jul 21 18:34:40 2017 +0200 Simulation support: getting ready to move more things into our Simulation class '(#1266).' commit 008084193db9f54e53779d8afb66821560a1c3f6 Author: Alan Garny '' Date: Fri Jul 21 18:08:52 2017 +0200 Some minor cleaning up. commit e6843651057b65ab2ff4443572aba3ddf33a8b4d Author: Alan Garny '' Date: Fri Jul 21 18:05:17 2017 +0200 Taking advantage of our SED-ML file and COMBINE archive classes now hosting their own issues '(#1266).' commit 02140d911335134bfbc0077b14e6d18def7e7cc2 Author: Alan Garny '' Date: Fri Jul 21 17:54:05 2017 +0200 Some minor cleaning up. commit e98ee20f6243b7badfd771cd651daa738b54b273 Author: Alan Garny '' Date: Fri Jul 21 17:26:08 2017 +0200 Simulation Experiment view: now make use of our '(still' 'basic)' new Simulation support classes '(#1266).' commit 9495a63e1a2d9cdbc58c4a68dc2383c83f18aa89 Author: Alan Garny '' Date: Fri Jul 21 16:35:36 2017 +0200 Copied the contents of 'simulationexperimentviewsimulation.*' and 'simulationexperimentviewsimulationworker.*' to 'simulation.*' and 'simulationworker.*,' respectively '(#1266).' commit 313df42f616de60308039f944373eccc08840b87 Author: Alan Garny '' Date: Fri Jul 21 15:35:54 2017 +0200 Simulation plugin: created a shell plugin '(#1266).' commit 7df26a6ca60c83e1041f8a20e24fbb891d11dac6 Merge: af11be93f 566882e64 Author: Alan Garny '' Date: Fri Jul 21 14:33:05 2017 +0200 Travis CI: use ninja instead of make. commit 566882e64d0ae1b7ac25e14c24ec2682b6d70fb5 Author: Alan Garny '' Date: Fri Jul 21 14:04:37 2017 +0200 Travis CI: use ninja instead of make. commit caa9b93e0ff3d3b670f0e2857b34644f5d68e984 Author: Alan Garny '' Date: Fri Jul 21 13:35:10 2017 +0200 Travis CI: trying to build with ninja on macOS. commit af11be93f196bce1f6fa117da5b57b3564f10b7e Merge: 944d5130f 535e2d2ed Author: Alan Garny '' Date: Fri Jul 21 13:34:16 2017 +0200 SimulationExperiment view: prevented the renaming of a file from messing up a locked graph '(closes' '#1365).' commit 4878739bda5c9ce072b58ed3bf15aaf1f2cc2bb1 Author: Alan Garny '' Date: Fri Jul 21 13:24:59 2017 +0200 Travis CI: trying to build with ninja on Linux. commit 535e2d2eddf6a50f783196da1be661b3a1881b9d Author: Alan Garny '' Date: Fri Jul 21 13:02:27 2017 +0200 Slight update to our downloads page '(#1365).' commit de1409dc43b92a2074e17d51796b96d4fe31c910 Author: Alan Garny '' Date: Fri Jul 21 12:59:33 2017 +0200 SimulationExperiment view: prevent the renaming of a file from messing up a locked graph '(#1365).' commit 944d5130f51aaec30f8a4bfd52ec24e23bd688bb Merge: be4fa163d d40cf369d Author: Alan Garny '' Date: Thu Jul 20 19:44:45 2017 +0200 Text-based editors: the font size 'doesn'\''t' get reset anymore when reloading a file '(closes' '#1369).' commit d40cf369d5c1aa5ce73c81590aa87c973d3a2e22 Author: Alan Garny '' Date: Thu Jul 20 18:54:11 2017 +0200 Slight update to our downloads page '(#1369).' commit dd46fb245204566200b092899310e1aee468e4c9 Author: Alan Garny '' Date: Thu Jul 20 18:52:10 2017 +0200 Text-based editors: the font size 'doesn'\''t' get reset anymore when reloading a file '(#1369).' commit be4fa163dfc7132ec76970464eab459c54174f1c Author: Alan Garny '' Date: Thu Jul 20 17:48:37 2017 +0200 Some minor cleaning up. commit 62f19c2a03c4c23bdcf0e719b2994a878eedbace Merge: 17e7d4a95 2376e25a3 Author: Alan Garny '' Date: Thu Jul 20 17:18:20 2017 +0200 Mainly some refactoring and cleaning up. commit 2376e25a3d31b6915a39d9a9984001c80baf05f7 Author: Alan Garny '' Date: Thu Jul 20 16:37:24 2017 +0200 Simulation Experiment view: prevent a potential problem with filters when exporting a simulation to SED-ML or a COMBINE archive. commit d05af71bc969d80fd7ca6dbac28160252d080719 Author: Alan Garny '' Date: Thu Jul 20 16:24:18 2017 +0200 Some minor cleaning up. commit c39b0d5cb5de6663471b3ae9bc7307f1eb996e2a Author: Alan Garny '' Date: Thu Jul 20 16:17:16 2017 +0200 SED-ML support: now have methods to check that it is supported and to retrieve its corresponding CellML file. This has basically meant moving 'SimulationExperimentViewSimulationWidget::sedmlFileSupported()' to 'SedmlFile::isSupported()' and 'SimulationExperimentViewSimulationWidget::retrieveCellmlFile()' to 'SedmlFile::cellmlFile().' commit f16d5ec7f6b75f5d96caeaf7a99e14bd004ca053 Author: Alan Garny '' Date: Thu Jul 20 14:53:52 2017 +0200 Moved 'SimulationExperimentViewSimulationWidget::sedmlAlgorithmSupported()' to 'SedmlFile::algorithmSupported().' commit 60e208f71ef1ebeaa2ab538e3610b3fd814750e6 Author: Alan Garny '' Date: Thu Jul 20 14:40:02 2017 +0200 Some minor cleaning up. commit 27d911e2033a35d5edb5446b2daf9c430c24a003 Author: Alan Garny '' Date: Thu Jul 20 13:29:07 2017 +0200 SED-ML support: can now validate a SED-ML file directly. This is in contrast with before where we could only validate some file contents. commit 57721e2d565f3f8ff242851667bd35b44c2edf9e Author: Alan Garny '' Date: Thu Jul 20 12:51:27 2017 +0200 SED-ML support: allow the creation of a SED-ML with the file name of its owner. This will come handy later on when we can retrieve the corresponding CellML file of a SED-ML file. commit ce0df3fcfe3385b73a90832acb7f92a25b9c67a1 Author: Alan Garny '' Date: Thu Jul 20 11:23:18 2017 +0200 COMBINE support: now have methods to check that it is supported and to retrieve its corresponding SED-ML file. commit e78cc96a1b04a05d8ce0f0a615901787cdd5a20f Author: Alan Garny '' Date: Thu Jul 20 10:34:47 2017 +0200 Some minor cleaning up. commit 15e80aee8631b0db8b71110b54e5cf8ee89345d0 Author: Alan Garny '' Date: Wed Jul 19 19:14:40 2017 +0200 CellML support: added a method to directly check for a CellML 'file'\''s' validity. commit f5c441e79258ad193fe0b8f931276b3a88df131b Author: Alan Garny '' Date: Wed Jul 19 19:12:56 2017 +0200 Some minor cleaning up. commit 85f218d88126e28da1059e577a540221b15da4b6 Author: Alan Garny '' Date: Wed Jul 19 18:48:56 2017 +0200 $'\020Some' minor cleaning up. commit c0aa60c4cb7f6a7c7dda4dfddcf21476283f47be Author: Alan Garny '' Date: Wed Jul 19 18:38:50 2017 +0200 Moved SimulationExperimentViewSimulationWidget::FileType to SimulationExperimentViewSimulation::FileType. commit f8445384baed1638e807af097efe84518eabd2dd Author: Alan Garny '' Date: Wed Jul 19 18:15:05 2017 +0200 Some minor cleaning up. commit f68b4e7c13b055ed3389245f81692253f5b82654 Author: Alan Garny '' Date: Wed Jul 19 17:15:15 2017 +0200 CellML Annotation view: fixed a class member access problem. Indeed, we were trying to call 'CellmlAnnotationViewCellmlElementItem::type()' on our $'model\342\200\231s' invisible root item, which obviously cannot work, even though it used to be $'\342\200\230fine\342\200\231' until 'now…?!' commit 17e7d4a9538190384843a4cdd01d7bc8a70c50c9 Author: Alan Garny '' Date: Tue Jul 18 19:46:22 2017 +0200 Slight update to our downloads pages. commit dc8272ed20389c8a51ac5e15df3088b6ef614c82 Merge: 12f9a33d9 9b6009fc1 Author: David Brooks '' Date: Tue Jul 18 22:42:40 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 12f9a33d96acd0185ba29888161ba679e732d61d Author: David Brooks '' Date: Tue Jul 18 21:53:59 2017 +1200 Resolve build issues with Python headers '(#1376).' commit f5a0490d98300233576fe00a7c9ae5fa02c31c3f Author: David Brooks '' Date: Tue Jul 18 21:53:28 2017 +1200 Export '`${PROJECT_NAME}_EXTERNAL_SOURCES`' so other plugins can use depend on this target '(#1376).' commit 9b6009fc1f032dff8ea595a80e9c11306f4fa2a0 Merge: fb7a50355 48f3ca545 Author: Alan Garny '' Date: Sat Jul 15 23:55:07 2017 +0200 Some minor refactoring and some cleaning ups. commit 48f3ca5450faeedb211c7e3feb7c50536f708ca9 Author: Alan Garny '' Date: Sat Jul 15 23:24:40 2017 +0200 SimulationExperiment view: replaced a couple of 'QObject::tr()' calls with 'tr().' commit fde5fc75f2145e1ff20ed6e45dd8f055127d1380 Author: Alan Garny '' Date: Sat Jul 15 23:18:34 2017 +0200 SimulationExperiment view: make sure that our SED-ML related messages are properly formatted. commit b507008af603a3e9cbb0722db100439bcf4ea566 Author: Alan Garny '' Date: Sat Jul 15 23:17:10 2017 +0200 Some minor cleaning up. commit 627b8436b2c65d3625aba5fc1c68a9fb691dbee4 Author: Alan Garny '' Date: Sat Jul 15 22:50:39 2017 +0200 Some minor cleaning up. commit 9c7ec87a79cd4a67d395914f282b87616338dee3 Author: Alan Garny '' Date: Sat Jul 15 21:29:16 2017 +0200 Moved 'SimulationExperimentViewSimulationWidget::parameterIcon()' to 'CellmlFileRuntimeParameter::icon().' commit fb7a50355354d2057eb47644e1422a2f770b9096 Merge: c2928f276 f3870d7f8 Author: Alan Garny '' Date: Sat Jul 15 20:02:18 2017 +0200 Make certain interfaces available to other plugins '(closes' '#1371).' commit f3870d7f8f85657212929ef56bcf709ac9516cfb Author: Alan Garny '' Date: Sat Jul 15 19:05:22 2017 +0200 Take advantage of our new ''\''global'\''' solver and data store interfaces '(#1371).' commit 3b062751244dbb5f864bfc466fa474509f46602e Author: Alan Garny '' Date: Sat Jul 15 17:02:42 2017 +0200 Take advantage of our new ''\''global'\''' SED-ML and COMBINE file type instances '(#1371).' commit 21006a3f994dd4fb1bb99c2513c673842dd26c99 Author: Alan Garny '' Date: Sat Jul 15 16:56:55 2017 +0200 Take advantage of our new ''\''global'\''' CellML file type instance '(#1371).' commit 3786cbd97438cf164d336fcdbc6402d5fb5b56ed Author: Alan Garny '' Date: Sat Jul 15 16:43:23 2017 +0200 Added a CellML, SED-ML and COMBINE file type interface '(#1371).' commit 222d9895a777a63e3d8d150598c50b481aa9894d Author: Alan Garny '' Date: Sat Jul 15 16:14:57 2017 +0200 Slight update to our downloads page '(#1371).' commit c2928f276eb5bd463d0218965eab64a1c7cf910a Merge: 876827ef7 8755623fb Author: Alan Garny '' Date: Sat Jul 15 13:11:57 2017 +0200 Core plugin: make certain interfaces available to other plugins '(closes' '#1371).' commit 8755623fb20c7eaca6e5380fd5d6ad424f1a35af Author: Alan Garny '' Date: Sat Jul 15 11:45:57 2017 +0200 Slight update to our downloads page '(#1371).' commit a3aa3899b26b5a6de930b6c7f98e716c93001a95 Author: Alan Garny '' Date: Sat Jul 15 11:41:52 2017 +0200 Core plugin: make certain interfaces available to other plugins '(#1371).' commit 8f38fc8fa39edada9ec3d843a2175bb47188d6b1 Merge: f5c42438a 876827ef7 Author: David Brooks '' Date: Fri Jul 14 10:34:12 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 876827ef7d75494763f8b05a988bfd8152b1b5c5 Merge: 2ad47f083 bbc4c23a8 Author: Alan Garny '' Date: Thu Jul 13 20:50:14 2017 +0200 Various cleaning ups. commit bbc4c23a8f8a7dad7b88923d710dcf4f3f1042c4 Author: Alan Garny '' Date: Thu Jul 13 19:01:57 2017 +0200 Added a missing header file. commit a7ad72acdb7450d4ce9e3d20c2a42be80149b426 Author: Alan Garny '' Date: Thu Jul 13 18:40:20 2017 +0200 Standard support: renamed a few methods for our StandardFileManager class. commit 4ea95502d0ad37184bdb187f86174a09e889c765 Author: Alan Garny '' Date: Thu Jul 13 18:34:58 2017 +0200 SimulationExperimentView plugin: only ask our view widget to reload itself if really necessary. commit 46e5b0fa2e31913f1dd5ee070135aaf6a8a6b66a Author: Alan Garny '' Date: Thu Jul 13 18:34:08 2017 +0200 ''\''Properly'\''' initialise some classes. Indeed, we forgot to do it after commit 6642776. commit 87d7fac6178016863dbbb0c6897877adba6dae9b Author: Alan Garny '' Date: Thu Jul 13 18:33:27 2017 +0200 Some minor cleaning up. commit ec05793d949c20009f39f48a082e8a4991e08013 Author: Alan Garny '' Date: Thu Jul 13 18:32:16 2017 +0200 Replaced 'QObject::tr()' with 'tr()' wherever possible. commit 32be527f5c8ec4df6999a2eed852f17dbbb9492b Author: Alan Garny '' Date: Thu Jul 13 18:27:23 2017 +0200 ''\''Properly'\''' initialise some classes. Indeed, we forgot to do it after commit 6642776. commit fae3147840f44f0f3d67caf4a60f133366dc3b9a Author: Alan Garny '' Date: Thu Jul 13 18:23:04 2017 +0200 Removed unnecessary include files. commit 2ad47f08341a1324dca918eb3c4d59914c5e679f Merge: 221712515 581ca062c Author: Alan Garny '' Date: Thu Jul 13 11:40:30 2017 +0200 SUNDIALS package: 'don'\''t' package CVODE and IDA anymore '(to' avoid conflicts with CVODES and 'IDAS)' '(closes' '#1367).' commit 581ca062c33850ac836a4f765687c15083503d47 Author: Alan Garny '' Date: Thu Jul 13 11:11:03 2017 +0200 SUNDIALS package: generated our new binaries '(#1367).' commit 19446070f3de3ed3508b7840a453f011ae2e0301 Author: Alan Garny '' Date: Thu Jul 13 10:37:05 2017 +0200 SUNDIALS package: 'don'\''t' package CVODE and IDA '(#1367).' commit d2eb6916532a9c07c385e25a3dae3d077e747acb Author: Alan Garny '' Date: Thu Jul 13 10:35:50 2017 +0200 Slight update to our downloads page '(#1367).' commit 22171251584394f539e8c5a91167c4372368128a Author: Alan Garny '' Date: Wed Jul 12 16:51:47 2017 +0200 Slight update to our COR page '[ci' 'skip].' commit f5c42438acec2e92e0a33eb5201063fd9bfae94c Author: David Brooks '' Date: Wed Jul 12 11:09:03 2017 +1200 Tidying up. commit 97383a89a58ea01f1a6c6f8b6c6db799996ff5b9 Author: Alan Garny '' Date: Mon Jul 10 11:27:10 2017 +0200 Slight update to our third-party libraries page. I had forgotten to update the version of QScintilla that we are now using. commit 38113aa82e6e77b866745334b5254aa9c94c320a Merge: 9a664e8be e807852b1 Author: Alan Garny '' Date: Sat Jul 8 01:15:53 2017 +0200 Some minor cleaning up and refactoring. commit e807852b1d5402d5527d118272b97aaefc952308 Author: Alan Garny '' Date: Sat Jul 8 00:41:50 2017 +0200 Some minor cleaning up. commit 78490f4c342799f2bce80fac7f6141f30f45876f Author: Alan Garny '' Date: Sat Jul 8 00:38:21 2017 +0200 QScintilla support: some minor cleaning up. commit 1ab9accda2c881464871588c520eccf81621f363 Author: Alan Garny '' Date: Sat Jul 8 00:29:59 2017 +0200 PMR support: refactoring of some static methods. commit da78f501a6cae88c52f72a3592d2028e35d867b6 Author: Alan Garny '' Date: Fri Jul 7 23:44:19 2017 +0200 CellML support: some minor cleaning up. commit e989a9c01b607062144f3e589487b29649e03ce5 Author: Alan Garny '' Date: Fri Jul 7 23:35:30 2017 +0200 CellML support: some minor cleaning up. commit 82ed497edaf177c312cf0848b1daddf85d76c1de Author: Alan Garny '' Date: Fri Jul 7 22:56:35 2017 +0200 CellMLAnnotation view: refactoring of some static methods. commit 9a664e8be4452f7d5287e002dd5cc847e7f2c2a5 Author: Alan Garny '' Date: Fri Jul 7 15:26:05 2017 +0200 Some minor cleaning up. commit dd2e6875ff09598e4e3b02a46979b8d586e57cb1 Author: Alan Garny '' Date: Fri Jul 7 15:19:16 2017 +0200 Some minor cleaning up. commit 9534d382e45e1b9f96c095c65e4ff30548628e9a Author: Alan Garny '' Date: Fri Jul 7 15:16:02 2017 +0200 Some minor cleaning up. commit 07b50d200a627a64315f5a848bc732b8ebd3b10a Merge: a40c2c55f 931bbaa6e Author: David Brooks '' Date: Fri Jul 7 21:26:39 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 931bbaa6e64ab8ef37aa94545c474e631696bd61 Merge: 4210736c1 37c1770a6 Author: Alan Garny '' Date: Fri Jul 7 11:12:06 2017 +0200 SimulationExperiment view: ensured that the plugin is ''\''clean'\''.' commit 37c1770a66e78b2065193ac705a48d9a3ac115a8 Author: Alan Garny '' Date: Fri Jul 7 10:37:46 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit a40c2c55f212e2c5e5131a476df14b9719ee0e89 Merge: 7eee832c1 4210736c1 Author: David Brooks '' Date: Fri Jul 7 11:29:52 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 7eee832c1e1c88ac116f086048c9eb54b5679f91 Merge: 7bc6f63c9 da782ace4 Author: David Brooks '' Date: Fri Jul 7 10:38:54 2017 +1200 Merge branch ''\''pythonwrapper'\''' into pythonplugin commit da782ace4d0a5e8c44a8cae70ca8add62486bdc9 Author: David Brooks '' Date: Fri Jul 7 10:37:44 2017 +1200 Minor tidy-up to comment. commit a91fdd6a1415a9ceb70bab76885e7259c6b665d2 Author: David Brooks '' Date: Fri Jul 7 10:37:17 2017 +1200 '`INCLUDE_DIRS`' parameter to '`ADD_PLUGIN`' is not needed if Python headers are copied to a well-known location '(#1275).' commit ecd412a4687d15f833d85dc655377ab368e60de6 Author: David Brooks '' Date: Fri Jul 7 10:20:05 2017 +1200 Tidy up code for calling a Python script '(#1275).' commit 2fab343f1e939919812bf60fbadc9b334d567c32 Author: David Brooks '' Date: Fri Jul 7 10:15:51 2017 +1200 Use an plugin interface for Python class wrapping '(#1275).' commit 4210736c1a556b5e9324d9250a7e360cfe189233 Merge: e50e09281 b0fc9fc09 Author: Alan Garny '' Date: Thu Jul 6 18:33:06 2017 +0200 SimulationExperiment view: ensured that the plugin is ''\''clean'\''.' commit b0fc9fc090f09138059a30a34bb1a3acdcd07eef Author: Alan Garny '' Date: Thu Jul 6 17:38:45 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit e07776f8679067ae88ab8c47efab07f602887817 Author: Alan Garny '' Date: Thu Jul 6 17:22:56 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 8acd5af3bb99dba33dfda62ba825c90c43c401ea Author: Alan Garny '' Date: Thu Jul 6 17:18:09 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 41197745092ce7fffbc72c90636dc1715ca10787 Author: Alan Garny '' Date: Thu Jul 6 17:10:50 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit 6bfc29b524db6d38495e4ea8aa4c8e43f3b09444 Author: Alan Garny '' Date: Thu Jul 6 12:24:11 2017 +0200 SimulationExperiment view: some work on ensuring that the plugin is ''\''clean'\''.' Indeed, the plugin currently has some public methods that are not part of any of our interfaces, which is not right since it breaks our interface approach to plugins. commit e50e092817e3d7b636f37d95fc4092ef1b02d095 Merge: fcc10c86c 2e98e236a Author: Alan Garny '' Date: Wed Jul 5 17:24:59 2017 +0200 Some minor cleaning up. commit 2e98e236ad543cb86e8c8ca4554337b0d8362fe7 Author: Alan Garny '' Date: Wed Jul 5 17:18:21 2017 +0200 Some minor cleaning up. commit fcc10c86c6a48fb8622597fd5edc23183537d3ca Author: Alan Garny '' Date: Wed Jul 5 13:38:18 2017 +0200 Slight update to our downloads page '[ci' 'skip].' commit 70d3721eb8890f902404ca2fd5b6bbc4b4bd3197 Merge: ec74122cb 4e0177dae Author: Alan Garny '' Date: Wed Jul 5 13:33:44 2017 +0200 QScintilla: upgraded to version 2.10.1 '(closes' '#1358).' commit 4e0177dae2d6b22c39db827ea24dc65484bb93bf Author: Alan Garny '' Date: Wed Jul 5 11:47:19 2017 +0200 QScintilla: generated the 2.10.1 binaries '(#1358).' commit ec74122cbf24a19435bb836f4cfa5c22910aa0ed Merge: 07c36067d 92a45924f Author: Alan Garny '' Date: Wed Jul 5 11:37:59 2017 +0200 Added a warning about our change of license. commit f7787f08f2828e1454aaf05b6d128e1a742b70f8 Author: Alan Garny '' Date: Wed Jul 5 11:36:38 2017 +0200 QScintilla: some work on upgrading to version 2.10.1 '(#1358).' QScintilla now distinguishes between release and debug versions '(on' Windows at 'least).' commit 92a45924ff580732d096ef5c7d37a7b441504726 Author: Alan Garny '' Date: Wed Jul 5 11:07:16 2017 +0200 Added a warning about our change of license. commit 2852e4a00cb1ce8fb3020bd38132af5aeceb4c77 Author: Alan Garny '' Date: Wed Jul 5 11:06:53 2017 +0200 Some minor cleaning up. commit 8daa85df2386b3f3d58519a29f6d2211ca2311ef Merge: 1e180274b 07c36067d Author: David Brooks '' Date: Wed Jul 5 10:58:07 2017 +1200 Merge branch ''\''master'\''' into pythonwrapper commit 7bc6f63c96fa62aac7030ae200a32e74bc07fabd Merge: 40a93ff37 07c36067d Author: David Brooks '' Date: Wed Jul 5 10:57:38 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit ba9bb7ab54f2d83b842367375b6ce14c53be5cbc Author: Alan Garny '' Date: Tue Jul 4 18:50:27 2017 +0200 QScintilla: some work on upgrading to version 2.10.1 '(#1358).' commit 97b09e9edca55a5b93b38fdd2fd325d707d7c55e Author: Alan Garny '' Date: Tue Jul 4 18:18:16 2017 +0200 Getting ready to build the QScintilla package '(#1358).' commit 07c36067da4643213edc79905e3d572e76be7d5f Merge: 239f091b4 e5f4dfa3a Author: Alan Garny '' Date: Tue Jul 4 11:37:11 2017 +0200 Removed our dependency on Qt Charts. commit e5f4dfa3a0da8c20bdaa2e39e131cb27bca8a1b6 Author: Alan Garny '' Date: Tue Jul 4 11:06:36 2017 +0200 Removed all references to Qt Charts '(see' issue '#1300).' commit 6b28c6685f90051f7a028b1536aedd834053d65b Author: Alan Garny '' Date: Tue Jul 4 10:35:43 2017 +0200 Qt Charts and QtWebKit packages: removed their cmake/patch.c file, which is not needed anymore. commit 1e180274bfbd80acb0c0a6e2a3313225ebaa2943 Merge: 25cebba63 40a93ff37 Author: David Brooks '' Date: Tue Jul 4 17:43:55 2017 +1200 Merge branch ''\''pythonplugin'\''' into pythonwrapper commit 40a93ff3733ec754bed726c22577353c688d7471 Merge: 5b5b58a6e 239f091b4 Author: David Brooks '' Date: Tue Jul 4 17:43:21 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 239f091b4ac728ab852ea69d150c2dc6f3c0c746 Merge: 939c47efd bf6e9aba0 Author: Alan Garny '' Date: Mon Jul 3 19:16:34 2017 +0200 Documentation: reference to COR and a link to download it. commit bf6e9aba006d994d591a8d1609672a4cc67f5808 Author: Alan Garny '' Date: Mon Jul 3 18:21:19 2017 +0200 Documentation: reference to COR and a link to download it. commit 939c47efdb6b0c3b219ecfa2997afbc8079245b6 Author: Alan Garny '' Date: Mon Jul 3 11:39:04 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 49f14320c2e484e5a2869f314ef06c491a8c471c Author: Alan Garny '' Date: Mon Jul 3 11:38:59 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit dbfa3733b40ef0bc26168e2f1ecef5aa765800c6 Author: Alan Garny '' Date: Mon Jul 3 11:32:41 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit c7f938c14744734ae91e8650918c6e9ba6925183 Author: Alan Garny '' Date: Mon Jul 3 11:32:18 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit af20ed03a747f9ab66a05e05e660e03cab2611b6 Merge: 878068a75 79ac18ff2 Author: Alan Garny '' Date: Sun Jul 2 13:34:08 2017 +0200 Property Editor widget: disallowed navigation using the '(Shift+)Tab' 'key(s)' '(closes' '#1354).' commit 79ac18ff263f41b3c5733645a1ced52bfdfbb232 Author: Alan Garny '' Date: Sun Jul 2 13:02:00 2017 +0200 Slight update to our downloads page '(#1354).' commit c872649f25282b608d0298a9824e1b920588a9a6 Author: Alan Garny '' Date: Sun Jul 2 12:59:38 2017 +0200 Property Editor widget: disallowing navigation using the '(Shift+)Tab' 'key(s)' '(#1354).' commit f46bb20b641475baec2ab8370dba055b459fa74e Author: Alan Garny '' Date: Sun Jul 2 12:52:18 2017 +0200 Property Editor widget: disallowing navigation using the '(Shift+)Tab' 'key(s)' '(#1354).' commit b9f9ae1bf1739519fb7ebbd2551ef906cebd0ac6 Author: Alan Garny '' Date: Sun Jul 2 12:43:33 2017 +0200 Some minor cleaning up. commit 878068a75d322d065af14bd2392d588641e0d4ab Merge: ac09e4b3d fe99ad916 Author: Alan Garny '' Date: Sat Jul 1 14:23:30 2017 +0200 LLVM: upgraded to version 4.0.1 '(closes' '#1352).' commit fe99ad916ec5fafca2a4edc68a425ba0ab206cfa Author: Alan Garny '' Date: Sat Jul 1 13:56:12 2017 +0200 LLVM+Clang package: new Windows binaries '(#1352).' commit f74515eb18bd1971f251af8a08874bc122ecec20 Author: Alan Garny '' Date: Sat Jul 1 10:23:10 2017 +0200 LLVM+Clang package: new Windows binaries '(#1352).' commit 39115ec022976770f0780f450f9097cc70888413 Author: Alan Garny '' Date: Sat Jul 1 02:36:12 2017 +0200 LLVM+Clang package: generated binaries for version 4.0.1 '(#1352).' commit a5c0bf5c522c918d1089c738fc4431a61dc262ef Author: Alan Garny '' Date: Fri Jun 30 17:01:24 2017 +0200 We actually want to build our other plugins to make sure that LLVM+Clang works fine '(#1352).' commit 22fad0b6ec6bad053872b8497d46729dc79e74ed Author: Alan Garny '' Date: Fri Jun 30 16:56:52 2017 +0200 Now build version 4.0.1 of LLVM+Clang '(#1352).' commit 11ad2f037825a135e8037d89c9683834be3ab764 Author: Alan Garny '' Date: Fri Jun 30 14:31:28 2017 +0200 Get ready to build LLVM+Clang '(#1352).' commit b78a9d86a9f8ac21f1e0f7d03ac3e13081f64f35 Author: Alan Garny '' Date: Fri Jun 30 14:24:30 2017 +0200 Slight updates to our third-party libraries and downloads pages '(#1352).' commit ac09e4b3d0ffc150b03571207e27e771396d7e0e Merge: dfba75aa2 7e5f52adc Author: Alan Garny '' Date: Fri Jun 30 14:03:13 2017 +0200 Some minor cleaning up regarding the BioSignalML API package. commit 7e5f52adc06d6b0bda7ca11a16824c7b11b5b1b9 Merge: a7b36d954 aa01cdaf5 Author: Alan Garny '' Date: Fri Jun 30 13:25:02 2017 +0200 Updated BioSignalML binaries for Linux '(#1313).' commit a7b36d954287c9194e984c4f72bddffc258c5632 Merge: 9fee26d57 dfba75aa2 Author: Alan Garny '' Date: Fri Jun 30 11:43:11 2017 +0200 Merge branch ''\''master'\''' into cleaning-up. commit dfba75aa2b22ccb01f3abc2a21e8e09a31936bd0 Author: Alan Garny '' Date: Fri Jun 30 11:42:00 2017 +0200 Slight update to our prerequisites page '(closes' '#1350)' '[ci' 'skip].' commit aa01cdaf533fa43024d75faf28ca7d4dbace8489 Author: David Brooks '' Date: Thu Jun 29 21:19:25 2017 +1200 Update BioSignalML binaries for Linux '(#1313).' commit 5b5b58a6ea57e38be39ecb53b8802693ca4837be Merge: 3abe056d5 0452d77b4 Author: David Brooks '' Date: Thu Jun 29 21:20:26 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 0452d77b49ef835188168ade0f49682bb42c0c92 Merge: 114585383 892dea0f2 Author: Alan Garny '' Date: Wed Jun 28 15:38:23 2017 +0200 Plugins: now provide message when a plugin is considered to be invalid '(closes' '#1347).' commit 1145853832643534b36d8277d78f7e60ef0c1622 Author: Alan Garny '' Date: Wed Jun 28 15:02:49 2017 +0200 Travis CI: we 'don'\''t' need to specify the edge group anymore. Indeed, Travis CI have now officially upgraded their system, so we are fine '(see' 'https://blog.travis-ci.com/2017-06-21-trusty-updates-2017-Q2-launch).' commit 892dea0f22afb5ee127725ed3d2720e1a0fd06c4 Author: Alan Garny '' Date: Wed Jun 28 14:55:57 2017 +0200 Slight updates to our what is new and downloads pages '(#1347).' commit ff112045941934893c1fda6c5a10f4b7b007fc2a Author: Alan Garny '' Date: Wed Jun 28 14:51:25 2017 +0200 Plugins: provide an error message when a plugin is considered to be invalid '(#1347).' commit 3abe056d5a87dfd21acd60df4b560dd53a4638af Author: David Brooks '' Date: Wed Jun 28 21:45:27 2017 +1200 PythonQt needs QtQuickWidgets library '(#1086).' commit 8fd0b9920971a5ced024a966d340e531c1531970 Author: Alan Garny '' Date: Tue Jun 27 20:04:20 2017 +0200 Some minor cleaning up. commit 1b449f1a1da85f197117ec24ab6fb0c138a4dfef Author: Alan Garny '' Date: Mon Jun 26 16:19:24 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 558c21cd58c0af4794e3c6896b614c66da38585b Author: Alan Garny '' Date: Mon Jun 26 15:37:42 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 9fee26d57946b3ba6b56d11998816229dd11d088 Author: Alan Garny '' Date: Mon Jun 26 10:46:31 2017 +0200 BioSignalML API package: added a very simple test to make sure that we have access to BioSignalML. commit a6f2bb0ea0d48f5294a200e2e3203dfe4637af5e Author: Alan Garny '' Date: Mon Jun 26 10:02:59 2017 +0200 BioSignalML API package: removed the '`include`' folder. We now have it in the '`ext`' folder, not to mention that this one was slightly off when it comes to the version of the libraries. commit 6da3a8a4091415e8fc3e527c4073ca886386e67c Merge: 18a6f753c 0b72078dc Author: David Brooks '' Date: Mon Jun 26 19:56:41 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 0b72078dc367ddc29bd9338b5ef2b4a4b360545a Merge: d3c1c3d8c 7713a0844 Author: Alan Garny '' Date: Mon Jun 26 01:03:08 2017 +0200 Some minor CMake-related refactoring following our work on issue '#1342.' commit d3c1c3d8cc3a5afd3129c3760e49336f48c8e2b5 Merge: 03686748f d14a3ad78 Author: Alan Garny '' Date: Sun Jun 25 23:46:13 2017 +0200 Use new packaging system for BioSignalML API plugin '(closes' '#1313).' commit 7713a084418a31aaa122d7686efb8983955d62f1 Author: Alan Garny '' Date: Sun Jun 25 23:40:55 2017 +0200 Reuse our C file for patching Qt CMake files '(useful' for both our QtCharts and QtWebKit 'packages).' commit d14a3ad7817d45a10d20029b5e4488ebe2f2923f Author: David Brooks '' Date: Mon Jun 26 08:34:28 2017 +1200 Tidy up CMake 'script;' specify correct package release tag '(#1313).' commit 6aeeb785e612203ef13bfa8e7b31be6b89207ba6 Author: Alan Garny '' Date: Sun Jun 25 22:30:38 2017 +0200 Some minor cleaning up. This was '(rightly)' confusing Ninja who thought that there were two sets of rules for both our release and debug versions of Qt Charts. commit 9a485bda413bdc2f3c13b0b8b5286dc9d4530245 Author: Alan Garny '' Date: Sun Jun 25 21:31:11 2017 +0200 Reuse our CMake file for patching Qt header files '(useful' for both our QtCharts and QtWebKit 'packages).' commit 265ecae49f6bb5accc78049fbaef7f1c23334f8c Author: David Brooks '' Date: Sun Jun 25 21:11:39 2017 +1200 Upgrade to libbiosignalml v0.8.4 and typedobject 'v1.1.2;' build binaries for all platforms '(#1313).' commit 79b3ce8b08e8724f27f786dd01df4331d9e048bd Author: Alan Garny '' Date: Sun Jun 25 00:45:11 2017 +0200 libSBML package: only retrieve the libSBML dependencies if we 'don'\''t' have them and if we want to build libSBML. commit 03686748f513d3ef6c575ef4e28d1e9fb9327fee Merge: e4625a8dc 6d807d28e Author: Alan Garny '' Date: Sat Jun 24 21:23:05 2017 +0200 Added Qt Charts as a package '(closes' '#1342).' commit 6d807d28e83ed80c6a499c9583bea34c69d7cf24 Author: Alan Garny '' Date: Sat Jun 24 20:54:42 2017 +0200 Slight update to our downloads page '(#1342).' commit 9aa6502092645b24504c7693285104b4502873c7 Author: Alan Garny '' Date: Sat Jun 24 20:45:41 2017 +0200 Some minor cleaning up '(#1342).' commit 99f2a51905a857ff8977c55ecc42c3dace4338ae Author: Alan Garny '' Date: Sat Jun 24 20:32:52 2017 +0200 QtCharts package: done building Qt Charts '(#1342).' commit 6e7ec643dc8a39ed1f0268f9b33d8b569304f28f Author: Alan Garny '' Date: Sat Jun 24 20:30:24 2017 +0200 QtCharts package: built it on Windows and Linux '(#1342).' commit dca1a39eddbabe8009509f261b9f7672db4a27a7 Author: Alan Garny '' Date: Sat Jun 24 20:07:39 2017 +0200 QtCharts package: make sure that we can configure things on Linux '(#1342).' commit 2e99dcc41b1df7c92ae6c57b5227351c28f97634 Author: Alan Garny '' Date: Sat Jun 24 19:57:49 2017 +0200 QtCharts package: built it on macOS '(#1342).' commit e4625a8dca22569bd0632d78c698b85f3b00a990 Author: Alan Garny '' Date: Sat Jun 24 18:05:16 2017 +0200 Some minor cleaning up. commit 65b50852f29c1ce4a4e98c1a77ea3adbec587bd5 Author: Alan Garny '' Date: Fri Jun 23 19:25:18 2017 +0200 libgit2 package: updated our Windows binaries. commit 0052cda4fd9903326bc1cc4b8aa37aae1364be75 Author: Alan Garny '' Date: Fri Jun 23 19:04:21 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit b80092d5210994c0e7a3f596ab66307a11f2c506 Author: Alan Garny '' Date: Fri Jun 23 19:04:05 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 6eedb14c11d16d936c077aebcef79a749dcee00d Author: Alan Garny '' Date: Fri Jun 23 18:41:52 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 3215407e5a355542f687994ff3e898a3670dbb69 Author: Alan Garny '' Date: Thu Jun 22 16:21:03 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 53c495cb141a306a5619514bc4d327e595cc98a9 Author: Alan Garny '' Date: Thu Jun 22 16:18:24 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 8837b79d64e69e6692f53a195173d6dc81587a06 Merge: 1ab7ebeac 9de8bbc87 Author: Alan Garny '' Date: Thu Jun 22 16:12:08 2017 +0200 libgit2: upgraded to version 0.26 '(closes' '#1340).' commit 9de8bbc8722abb20a8f20895ae921218a6333130 Author: Alan Garny '' Date: Thu Jun 22 15:38:33 2017 +0200 libgit2 package: new binaries '(#1340).' commit bdccbedf788993702c95f74724ba652173545778 Author: Alan Garny '' Date: Thu Jun 22 14:58:47 2017 +0200 libgit2 package: updated the version we are now using '(#1340).' commit 9fe1874af24f2b71137b79d31754c7f300b643bb Author: Alan Garny '' Date: Thu Jun 22 14:12:51 2017 +0200 libgit2 package: getting ready to update our binaries '(#1340).' commit cfd3d23899a8312253fb5d1a3acf8fe136996dd6 Author: Alan Garny '' Date: Thu Jun 22 14:12:23 2017 +0200 libgit2 package: now build against maint/v0.26 '(#1340).' commit a8cef53f45b2c2523694c4f84dd92c209ed5e629 Author: Alan Garny '' Date: Thu Jun 22 11:53:38 2017 +0200 Updated our downloads pages '(#1340).' commit 0e7b3b08741c5ea3419ea6e803aaabda2ab2bfe4 Author: Alan Garny '' Date: Thu Jun 22 11:52:00 2017 +0200 Slight update to our third-party libraries page '(#1340).' commit 1ab7ebeac417c00d322ec5d3ae520fb1e8f4d180 Author: Alan Garny '' Date: Thu Jun 22 10:20:52 2017 +0200 Slight update to our third-party libraries page '[ci' 'skip].' commit 25c854dcc25e9c3ec3910fa9fb22ec1b31003ac7 Author: David Brooks '' Date: Thu Jun 22 16:22:13 2017 +1200 Use new packaging system for BioSignalML API libraries '(#1313).' commit 18a6f753c5a4e6f8892c1239286ad965bca004de Author: David Brooks '' Date: Thu Jun 22 11:34:15 2017 +1200 CMake: as a safeguard, make sure that empty variables are defined. commit 21dd6e88aba74bb1cd1f2f8d6a4a268a28895d7b Merge: 5b6c7648f d28eaec40 Author: David Brooks '' Date: Thu Jun 22 11:29:00 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 5b6c7648f6dee6abefb918ca25d4d2242bbc7d02 Author: David Brooks '' Date: Thu Jun 22 11:25:21 2017 +1200 Python plugins need to be declared '*after*' other third-party plugins '(#1306).' commit d28eaec40bfb2b20a18a75704a82d15ad760c73c Merge: 01d927b98 f66a317eb Author: Alan Garny '' Date: Wed Jun 21 23:47:49 2017 +0200 New snapshot. commit f66a317ebc3ff4f5e35ad53fff9021de00a918b4 Author: Alan Garny '' Date: Wed Jun 21 19:43:17 2017 +0200 Downloads page: fixed a small problem with the size of a snapshot being undefined. commit 10522503cc4a0d83c68f96bc82bb2a02514c5606 Author: Alan Garny '' Date: Wed Jun 21 18:41:22 2017 +0200 New snapshot. commit 01d927b98d6188c5b97d34f449dbd99487c98663 Merge: b03adb43c 5fa672c8e Author: Alan Garny '' Date: Wed Jun 21 18:37:57 2017 +0200 Some minor cleaning up, as well as fixed a small mistake in commit f1e6066. commit 5fa672c8eb29486ecd7d0aeee57193bd169b335a Author: Alan Garny '' Date: Wed Jun 21 17:27:15 2017 +0200 Oops, made a mistake in commit f1e6066. commit db0abdbabb6021bed1dafc4b64084927e1c14515 Author: Alan Garny '' Date: Wed Jun 21 16:21:30 2017 +0200 Some minor cleaning up. commit f350f0a8869e9feca795c57d0057fc38bb6dda76 Author: Alan Garny '' Date: Wed Jun 21 15:59:04 2017 +0200 Some minor cleaning up. commit b03adb43c72121f8551e8f37c94e323ec17e780a Merge: 32acc62fa 0b31c4c86 Author: Alan Garny '' Date: Wed Jun 21 15:38:10 2017 +0200 Graph Panel widget: improved the plotting of small values '(closes' '#1322).' commit 0b31c4c86b8168d638f9aa945f556ebf8418c26b Author: Alan Garny '' Date: Wed Jun 21 15:03:37 2017 +0200 Graph Panel widget: improved the plotting of small values '(#1322).' commit 9a24b97ee51f8260fe7b39ceace74ce545d1229e Author: Alan Garny '' Date: Wed Jun 21 13:25:24 2017 +0200 Slight update to our downloads page '(#1322).' commit 32acc62fab92235c7e95b019e37184f1cbd7d554 Merge: 978bb9bf1 c72b07962 Author: Alan Garny '' Date: Wed Jun 21 12:44:26 2017 +0200 Some minor CMake-related cleaning ups. Also reintroduced the INCLUDE_DIRS option in our 'ADD_PLUGIN()' macro. commit c72b07962ce3a240231c62e4ac8ed996cd7b5490 Author: Alan Garny '' Date: Wed Jun 21 11:55:38 2017 +0200 Some minor cleaning up. commit c61d2eff79fb952eca9464a29abea36f5ff0b729 Author: Alan Garny '' Date: Wed Jun 21 11:33:38 2017 +0200 Getting ready to build libgit2. commit 5c03aa00a2a8978583a9ff538fa85e34a2e621a7 Author: Alan Garny '' Date: Wed Jun 21 11:14:20 2017 +0200 CMake: readding INCLUDE_DIRS for our 'ADD_PLUGIN()' macro. It is needed for some Python-related plugins. commit f1e606638144973ae175d16880070d7bcfaaf9b3 Author: Alan Garny '' Date: Wed Jun 21 11:10:58 2017 +0200 CMake: as a safeguard, make sure that empty variables are defined. commit 7c7bfa4bd4ee598b52d3d84727e3fa7a33f3192c Author: David Brooks '' Date: Wed Jun 21 16:36:28 2017 +1200 Update binaries for Python packages and PythonQt '(#1324).' commit df4fd77fe718a0468c86fcd9dc21edd0570eb07f Author: David Brooks '' Date: Wed Jun 21 16:35:20 2017 +1200 Correctly refer to the PythonQt library '(#1324).' commit f62b2482c67cee41bc987742bd6872b071bb5a66 Author: David Brooks '' Date: Wed Jun 21 16:34:43 2017 +1200 Suppress warning messages from compile '(#1324).' commit 8a2f42cb03d756979b9d5cd4b03e3041b874b0ed Author: David Brooks '' Date: Wed Jun 21 16:33:49 2017 +1200 We do depend on the order that Python plugins are declared... '(#1306).' commit 56dc63395621c97b79b982c4c3a326dda927fd5c Author: David Brooks '' Date: Wed Jun 21 16:33:06 2017 +1200 Reinstate INCLUDE_DIRS parameter to specify additional include directories '(#1306).' commit 103c7571cb2077bd8e89340011f31bfe538b2291 Author: David Brooks '' Date: Wed Jun 21 16:30:29 2017 +1200 Known include directories are now implicitly added '(#1306).' commit 50cdd318683a4f1f120665a2e22531e94ea5fd61 Author: David Brooks '' Date: Wed Jun 21 16:27:43 2017 +1200 Put CTK code used by PythonQtSupport plugin inside '`./src`' directory '(#1324).' commit e2ac0894abe926e1c9208f9a89fbf65ce02583ba Author: David Brooks '' Date: Wed Jun 21 14:00:13 2017 +1200 Remove unused '`diff`' files '(#1324).' commit c444dc1570084cb888b8b2010242ac47ddf3d7f8 Author: David Brooks '' Date: Wed Jun 21 13:30:41 2017 +1200 OAuth plugin sources were missing after merge '(#1306).' commit 675fad0ba04ec1545da79cf34e279b08132df9af Author: David Brooks '' Date: Wed Jun 21 13:15:19 2017 +1200 Upgrade IPython to version 6.1.0 '(#1324).' commit ca86adb4c4fe7ca0640c0a19bf0f2afd3ab93db6 Merge: 8e4325254 978bb9bf1 Author: David Brooks '' Date: Wed Jun 21 13:01:28 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 978bb9bf1cb0cb946e0652f915a83f2e65c537b5 Merge: 9074669ee b9845b3a2 Author: Alan Garny '' Date: Tue Jun 20 23:59:49 2017 +0200 API and third-party libraries: took advantage of our new packaging mechanism '(closes' '#1306).' commit b9845b3a206002eb50667cbf1b3d5982ded836af Author: Alan Garny '' Date: Tue Jun 20 23:12:25 2017 +0200 Travis CI: finally got things to work on 'macOS!' commit 99699f1335c60b55aee6741f5cc04f547d686bc7 Author: Alan Garny '' Date: Tue Jun 20 23:06:39 2017 +0200 Travis CI: finally got things to work on 'macOS!' commit 5a5ca41d5fbaff4d245848efcccb4479465e2751 Author: Alan Garny '' Date: Tue Jun 20 19:25:55 2017 +0200 Travis CI: some debug information. commit 3f80c5ca208eaf8048f7413f118538870326eb5b Author: Alan Garny '' Date: Tue Jun 20 19:24:33 2017 +0200 QtWebKit is needed as a module on Windows. commit b2a21340cb6824e0b6dbd9f9bcb6eb7e7151bfea Author: Alan Garny '' Date: Tue Jun 20 17:46:54 2017 +0200 Travis CI: trying to get things to work on macOS... commit 7597ce66f255e5257e3ee806ab7e5fba6859f9c4 Author: Alan Garny '' Date: Tue Jun 20 16:25:16 2017 +0200 Travis CI: just trying to get things to work on macOS... commit 2cdc945ad664006b2552c6ac2757e2c7fd487ff0 Author: Alan Garny '' Date: Tue Jun 20 15:44:15 2017 +0200 Travis CI: final macOS-related 'issue?...' commit a025548f07a1d1b706cf965acf88f48b33deb1f4 Author: Alan Garny '' Date: Tue Jun 20 11:27:54 2017 +0200 Travis CI: finally got it on 'macOS?!' commit 9ad3f3995733908978532a52bc95d3e08e531a55 Author: Alan Garny '' Date: Tue Jun 20 10:40:53 2017 +0200 Travis CI: trying to get things to work on macOS. commit 8e4325254e88a28750be27920d907ba65b569cfa Merge: bad17847a 9074669ee Author: David Brooks '' Date: Tue Jun 20 20:29:34 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit bad17847a89d6261ddacb4b9c3ea14706dd13150 Author: David Brooks '' Date: Tue Jun 20 20:28:15 2017 +1200 Upgrade numpy to version 1.13.0 '(#1324).' commit 85944e42e88e4745cbe22af13c50efc931755a08 Author: David Brooks '' Date: Tue Jun 20 20:27:45 2017 +1200 Get IPython running under Windows '(#1324).' commit 8f8420d798b6f49bef6e948f6839b7f4f8aef08e Author: Alan Garny '' Date: Tue Jun 20 10:03:21 2017 +0200 Oops, had broken things on macOS '(#1306).' commit 2c014bb790b3764627cac0312dac8051596bfd82 Author: Alan Garny '' Date: Tue Jun 20 09:30:42 2017 +0200 Travis CI: finally '(?)' got things to work on 'macOS?' commit 9481e41c064e1cdda155e8ee23d29cf1de0a8018 Author: Alan Garny '' Date: Tue Jun 20 09:19:44 2017 +0200 Travis CI: trying to see what has changed on Travis CI in terms of available libraries since this is causing us problems on macOS. commit b67e6be7486111fe6f10d31ca4b81c39e0e404e0 Author: Alan Garny '' Date: Tue Jun 20 09:19:23 2017 +0200 Travis CI: trying to see what has changed on Travis CI in terms of available libraries since this is causing us problems on macOS. commit 00597fe33b99f4418a4cd70d467f4adb4b1d2589 Author: Alan Garny '' Date: Tue Jun 20 08:43:51 2017 +0200 Travis CI: trying to understand why tests now fail on macOS. commit 58c5fd9a8cea16213b3dc9e06e63605fb9b74be8 Author: Alan Garny '' Date: Tue Jun 20 08:20:59 2017 +0200 Our new way of building our API and third-party libraries requires at least CMake 3.3 '(#1306).' commit c3f8b54629a4bdff7d96ddfb5d626ea25156d6b6 Author: Alan Garny '' Date: Tue Jun 20 07:45:21 2017 +0200 Travis CI: some minor cleaning up. commit 9f77156c265dfa06d0ac0be218879d32db8431f1 Author: David Brooks '' Date: Tue Jun 20 11:56:46 2017 +1200 Tweaks for Windows build of Python libraries '(#1085).' commit b3209190f8249ac9a98dd5dbe6ec2baac8c98fcf Author: David Brooks '' Date: Tue Jun 20 11:21:30 2017 +1200 'Don'\''t' start a matplotlib 'exec()' loop when running under PythonQt '(#1324).' commit 677b2d7125729ea7253baaa16872b6acfe1cb4b0 Author: Alan Garny '' Date: Tue Jun 20 01:08:30 2017 +0200 Make sure that linking to non-prebuilt API / third-party libraries works straightaway on Linux '(#1306).' The problem was that we were linking to a version of the library that might or not have already been physically present. commit 0d7112387dfcc3f1dcc06fddde23237a6799731e Author: Alan Garny '' Date: Tue Jun 20 00:14:23 2017 +0200 Travis CI: addressed a Linux-specific issue when it comes to build QScintilla '(#1306).' commit b098604467837ca743b7e7bb652f0a4e61cfe5c6 Author: Alan Garny '' Date: Mon Jun 19 22:47:23 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit db582dff44abcd8b0f9fb9857e4162ab73e6d643 Author: Alan Garny '' Date: Mon Jun 19 22:27:02 2017 +0200 Travis CI: it looks like we might be needing a more recent version of CMake on Linux. Using CMake 3.2, we are getting the following error when trying to build our QScintilla package: CMake Error at /usr/share/cmake-3.2/Modules/ExternalProject.cmake:1487 '(add_custom_command):' add_custom_command called with OUTPUT containing a '"<".' This character is not allowed. Call Stack '(most' recent call 'first):' /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2165 '(ExternalProject_Add_Step)' /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2325 '(_ep_add_build_command)' src/plugins/thirdParty/QScintilla/CMakeLists.txt:101 '(ExternalProject_Add)' commit 1825720f0d162ef26a574b8222570278878eb28e Author: Alan Garny '' Date: Mon Jun 19 22:24:40 2017 +0200 Travis CI: it looks like we might be needing a more recent version of CMake on Linux. Using CMake 3.2, we are getting the following error when trying to build our QScintilla package: CMake Error at /usr/share/cmake-3.2/Modules/ExternalProject.cmake:1487 '(add_custom_command):' add_custom_command called with OUTPUT containing a '"<".' This character is not allowed. Call Stack '(most' recent call 'first):' /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2165 '(ExternalProject_Add_Step)' /usr/share/cmake-3.2/Modules/ExternalProject.cmake:2325 '(_ep_add_build_command)' src/plugins/thirdParty/QScintilla/CMakeLists.txt:101 '(ExternalProject_Add)' commit 1ff8e5c43f11a4e578b25f21f04229d0b8fac31d Author: Alan Garny '' Date: Mon Jun 19 21:50:40 2017 +0200 Travis CI: build our QScintilla package on Linux. commit e058b779ca90a25066c12fb12e6c7a950f20a5d0 Author: Alan Garny '' Date: Mon Jun 19 21:25:29 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit 2c0bab8144b278df0671bd4eb0e665bbdd3a337f Author: Alan Garny '' Date: Mon Jun 19 21:09:52 2017 +0200 Travis CI: make sure that OpenGL can be found on Linux edge. commit bdbb0bda69e828271a70ddaa67e06a3a0d6b407e Author: Alan Garny '' Date: Mon Jun 19 19:55:25 2017 +0200 Travis CI: checking their forthcoming Linux image '(see' 'https://blog.travis-ci.com/2017-06-19-trusty-updates-2017-Q2).' commit f006a4763a95f7927926fcbe22e03d0d16d2365b Author: Alan Garny '' Date: Mon Jun 19 19:17:40 2017 +0200 Travis CI: ok, not quite sure how to ''\''fix'\''' the __cxa_throw_bad_array_new_length@Qt_5 issue. So, just revert to what we know works. commit ffc890795814ab4e2b106e950bfa338bce812258 Author: Alan Garny '' Date: Mon Jun 19 18:53:16 2017 +0200 Travis CI: some further macOS checks. commit e5f21c69bd1c7bad8b3d768ce273ae91e6c45f2e Author: Alan Garny '' Date: Mon Jun 19 18:52:13 2017 +0200 Travis CI: some further macOS checks. commit 148feff79da975743d77a30dd296cf54d5ad4ec3 Author: Alan Garny '' Date: Mon Jun 19 18:47:42 2017 +0200 Travis CI: oops, we were installing the wrong package '(see' commit '617f470).' commit 3c92ce73f2eac87ab12b500341a6eba15bc5828d Author: Alan Garny '' Date: Mon Jun 19 17:53:17 2017 +0200 Travis CI: trying to understand why our tests now fail on macOS. commit 7953853474d5fc26d5b085e77ffcf348b97ca93a Author: Alan Garny '' Date: Mon Jun 19 17:49:48 2017 +0200 Some minor cleaning up. Actually, this is related to commit 617f470. commit 617f4702d81c0551dd314a38db497e7db7c06cea Author: Alan Garny '' Date: Mon Jun 19 17:28:47 2017 +0200 Travis CI: now, because of the way we build our API and third-party libraries, we seem need to need to install lib32stdc++-4.9-dev on Linux '(#1306).' commit a34ec56c1e2188a9d38cb7a0124a4c1d78f92aec Author: Alan Garny '' Date: Mon Jun 19 16:53:52 2017 +0200 We 'don'\''t' need to ignore ''\''bin'\''' and ''\''lib'\''' folders anymore '(#1306).' commit d67fa7e48282d18cb73284ec1c1cba9972894e97 Author: Alan Garny '' Date: Mon Jun 19 16:43:27 2017 +0200 Some minor cleaning up. commit 69b4b8402ad7a66c683765c0991bea7493909c1b Author: Alan Garny '' Date: Mon Jun 19 16:35:34 2017 +0200 Slight update to our downloads page '(#1306).' commit 625f32791a0c0300e536609f83ce43ee1cfba46f Author: Alan Garny '' Date: Mon Jun 19 16:25:36 2017 +0200 Make sure that we clean everything before packaging OpenCOR. commit 4eccdcdc313ed9efe77ccd7d9c8a5bc9149bc73d Author: Alan Garny '' Date: Mon Jun 19 15:25:30 2017 +0200 QtWebKit package: new binaries '(#1306).' commit 3afa863099f0f090e1a15380a80152f86afa37d6 Author: Alan Garny '' Date: Mon Jun 19 13:04:23 2017 +0200 QtWebKit package: get ready to build it '(#1306).' commit b5c5e259fa2dc15c16094f40d5901b29a22c4555 Author: Alan Garny '' Date: Mon Jun 19 13:02:47 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit f0d3a2c3ad876b03a93f5f0b9752aafc954885b9 Author: David Brooks '' Date: Mon Jun 19 22:49:04 2017 +1200 Actually provide a patch file for matplotlib... commit c8e94797c927288a403aefe879f4a8d08bf895da Author: Alan Garny '' Date: Mon Jun 19 11:05:02 2017 +0200 QtWebKit package: get the package to depend on the correct version of ICU on Linux '(#1306).' commit a50c1d892f2452c95c2d146988ac7e7c646ca89b Author: Alan Garny '' Date: Mon Jun 19 10:32:31 2017 +0200 Make sure that qmake/make/nmake/jom command works properly '(#1306).' commit c844a8aa9720fbc76643483f3e59b36f7ea2958e Author: Alan Garny '' Date: Mon Jun 19 10:27:00 2017 +0200 Make sure that qmake/make/nmake/jom command works properly '(#1306).' commit 22ee9a2dff7d813c1dd25817ab0746272841a137 Author: Alan Garny '' Date: Mon Jun 19 10:07:49 2017 +0200 Make sure that qmake/make/nmake/jom command works properly '(#1306).' commit 037bd16ad3162bfbc445426bba3e0b36ad2c7bde Author: Alan Garny '' Date: Sun Jun 18 21:23:50 2017 +0200 Some minor cleaning up. commit f9102e6c64ae85d3d312090c2b839d2871269ec9 Author: Alan Garny '' Date: Sun Jun 18 20:10:45 2017 +0200 Some minor cleaning up. commit dc0015bc74281b1aa10694a01ac6e3118a8a8038 Author: David Brooks '' Date: Sun Jun 18 21:38:10 2017 +1200 Upgrade matplotlib to version 2.0.2 commit 1e3c794ccc7bdd61bf2cbf457556356571ddd301 Author: Alan Garny '' Date: Sat Jun 17 23:26:06 2017 +0200 QtWebKit package: slight update to the README.rst file '(#1306).' commit 3c169de5a24238f3978e6faec16204b60f8d35c4 Author: Alan Garny '' Date: Sat Jun 17 21:22:41 2017 +0200 Make sure that libstdc++.so.6 gets properly deployed on Linux. commit b8708f2bebedd347da7f45a49dc78c27c3bceae0 Author: Alan Garny '' Date: Sat Jun 17 20:51:19 2017 +0200 Some minor cleaning up. commit eb6f188bee368d86c29624212946240d74546b05 Author: Alan Garny '' Date: Sat Jun 17 20:24:18 2017 +0200 Some minor cleaning up. commit 37f75db8705b4b55d0ada40398e24c88e50ec43b Author: Alan Garny '' Date: Sat Jun 17 20:07:17 2017 +0200 Some minor cleaning up. commit 06bead547bc763b026b6c7a874faa29420bf3cda Author: Alan Garny '' Date: Sat Jun 17 19:52:34 2017 +0200 Revert '"Some' minor cleaning up '(#1306)."' This reverts commit 981c3977a36bb9a6cd2bf5793b6147543331f801. commit 981c3977a36bb9a6cd2bf5793b6147543331f801 Author: Alan Garny '' Date: Sat Jun 17 18:57:17 2017 +0200 Some minor cleaning up '(#1306).' commit b628e29c2e7d75c8024713415ebc14e8e3e7c191 Author: Alan Garny '' Date: Sat Jun 17 16:35:04 2017 +0200 Make sure that we can always build diff_match_patch on Windows. Indeed, depending on what header files have been included prior to including diff_match_patch.h, some macros may have been defined on Windows, making it impossible to compile a file that includes diff_match_patch.h. We therefore undefine those macros... '(We' also temporarily disable an MSVC 'warning.)' commit ae05d409e2d469b92fc82fa8727175da60fad761 Author: Alan Garny '' Date: Sat Jun 17 14:05:04 2017 +0200 'Don'\''t' need to disable warning '#4267' on Windows, except when it comes to LLVM+Clang. commit 867282751ed0f525562bbb64a708c8daaaf56ae6 Author: Alan Garny '' Date: Sat Jun 17 12:01:11 2017 +0200 Some minor cleaning up. commit f2bcd5c1332f313c3eee31e2461868521b46405c Author: Alan Garny '' Date: Sat Jun 17 11:53:35 2017 +0200 QtWebKit package: make sure that we can get access to the ICU libraries on Windows '(#1306).' commit 05d9a42867f8a315e1951ed41d0dda061958e2e0 Author: Alan Garny '' Date: Sat Jun 17 00:42:19 2017 +0200 Some minor cleaning up. commit 027ce5a8c7c5244a4e0ef884da0b6c0e2fba8c14 Author: Alan Garny '' Date: Sat Jun 17 00:28:22 2017 +0200 QtWebKit package: also deploy the ICU libraries on Windows '(#1306).' commit 399615e48d37409adf01d2ec09460738d3474d40 Author: Alan Garny '' Date: Fri Jun 16 15:55:33 2017 +0200 QtWebKit package: account for the fact that, on Windows, the QtWebKit build system builds both the release and debug versions at the same time '(#1306).' commit 6cdb7e6f3191ca76baf49eb523c497d56e99ee75 Author: Alan Garny '' Date: Fri Jun 16 15:44:40 2017 +0200 QtWebKit package: account for the fact that, on Windows, the QtWebKit build system builds both the release and debug versions at the same time '(#1306).' commit 9cf42bf6a203252868b6e75dee9ef39706bb4b65 Author: Alan Garny '' Date: Fri Jun 16 14:40:31 2017 +0200 QtWebKit package: oops, only shared libraries should be in the bin directory. Imported libraries should in the lib directory '(#1306).' commit ee2eee4292a4e7af504a30c4ceac5df48a8ea1e7 Author: Alan Garny '' Date: Fri Jun 16 14:33:05 2017 +0200 QtWebKit package: make sure that we deploy our libraries in the right place on Windows '(#1306).' commit 670af70dcceea6c984dd710f10f0fd2bf81fcc28 Author: Alan Garny '' Date: Fri Jun 16 14:02:58 2017 +0200 QtWebKit package: now have release binaries for Windows '(#1306).' commit 9ad8fa00d4a7c2fbbccaf8518ff54b06edcc300f Author: Alan Garny '' Date: Fri Jun 16 14:01:14 2017 +0200 QtWebKit package: make sure that our header patch works fine on Windows '(#1306).' commit 7125d4307de5c6170dc82f6241014cb6926e571a Merge: 18421a116 7dc6774b0 Author: Alan Garny '' Date: Fri Jun 16 12:59:11 2017 +0200 Merge branch ''\''issue1306'\''' of https://github.com/agarny/opencor into issue1306 commit 18421a116145281b40a1219b67a644bcabfcf18a Author: Alan Garny '' Date: Fri Jun 16 12:58:49 2017 +0200 QtWebKit package: make sure that our CMake files get patched on Windows '(#1306).' commit 7dc6774b016fc9763dca7211d785babbdcd3726b Author: Alan Garny '' Date: Fri Jun 16 11:05:38 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit 1e8a1aa9b38fc4677d13dada6ba1d536cf09d797 Author: David Brooks '' Date: Fri Jun 16 20:59:28 2017 +1200 Update PythonQt to version 3.2.0 '(#1324).' commit c58eb777560c14d481b56e0053e6767e9dbadf21 Author: David Brooks '' Date: Fri Jun 16 20:58:15 2017 +1200 Redirect Python logging output to the console '(#1324).' commit 8d19de927d49040216003142627ada88ca73cc4d Author: Alan Garny '' Date: Fri Jun 16 10:45:37 2017 +0200 QtWebKit package: new Linux binaries '(#1306).' commit c13105b96db7520eec2ef2889aa8e17dacf681e0 Author: Alan Garny '' Date: Fri Jun 16 10:26:14 2017 +0200 QtWebKit package: make sure that our QtWebKit header files have the expected contents '(#1306).' commit 9461dc68daeb0c880817dc34d595be3f196916ab Author: David Brooks '' Date: Fri Jun 16 11:08:55 2017 +1200 Our mods to PythonQt mean we can revert to using method calls to get QWidget properties in '`matplotlib`' '(#1324).' commit 78ac4db6bba085b838b6478199d86e000ffcc501 Author: David Brooks '' Date: Fri Jun 16 10:08:16 2017 +1200 The Python console window 'doesn'\''t' depend on 'OpenCOR'\''s' classes being wrapped '(#1324).' commit 43ef3a442aa668217ea45d4ba3aaf5651c8ef468 Author: Alan Garny '' Date: Thu Jun 15 19:26:56 2017 +0200 Some minor cleaning up. commit b41e0b098f98cfdf8d13eccd600049f98582987d Author: Alan Garny '' Date: Thu Jun 15 18:22:10 2017 +0200 QtWebKit package: new macOS binaries '(#1306).' commit 0727812794a2399bc96bc36ce23d41f0a1164415 Author: Alan Garny '' Date: Thu Jun 15 17:57:45 2017 +0200 QtWebKit package: distinguish between release and debug mode on macOS '(#1306).' commit b603d064550fb8c4041defa3e36346e9716c13a6 Author: Alan Garny '' Date: Thu Jun 15 17:30:08 2017 +0200 Some minor cleaning up '(#1306).' commit d7735ac30ba68042f3e949931a16847ef7dabe3a Author: Alan Garny '' Date: Thu Jun 15 17:19:02 2017 +0200 'Don'\''t' explicitly ask for external projects to be built silently '(#1306).' commit f0461dcfc6ca425d82baae72d82982dcede0339b Author: Alan Garny '' Date: Thu Jun 15 17:18:08 2017 +0200 Ask qmake to turn off all warnings '(#1306).' commit eea222e4a3fcafb2529c49fcd44511fa1eace8bf Author: Alan Garny '' Date: Thu Jun 15 16:45:26 2017 +0200 Some minor cleaning up. commit 34a7693435620c46d64a8e26a0092e454b9294df Author: Alan Garny '' Date: Thu Jun 15 13:29:03 2017 +0200 QtWebKit package: we need ICU v57.1 on Windows '(#1306).' commit 5af6912d5d87bf8ef6b974b5b603e30644e518b1 Author: Alan Garny '' Date: Thu Jun 15 13:03:23 2017 +0200 QtWebKit package: can now build on Linux '(#1306).' commit 57b7e218ac553aa6d0cb2567e252dd0158f8c90f Author: Alan Garny '' Date: Thu Jun 15 10:22:34 2017 +0200 QtWebKit package: can now build on Linux '(#1306).' commit 5095726324093f5009f2264946062e4e2bd6fef0 Author: Alan Garny '' Date: Wed Jun 14 18:31:23 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit 23d7aa7c920dcafdb269add348d8b3c27ccd4e09 Author: Alan Garny '' Date: Wed Jun 14 18:23:44 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Linux '(#1306).' commit 0e17c9fa7a81766869736f89a20c8518dcfed16a Author: Alan Garny '' Date: Wed Jun 14 17:43:25 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit 9f43ff34ba7ed124ea00f2ef025c9d50d91fbba5 Merge: 6765e2132 9e3be90b5 Author: Alan Garny '' Date: Wed Jun 14 17:34:40 2017 +0200 Merge branch ''\''issue1306'\''' of https://github.com/agarny/opencor into issue1306 commit 6765e2132c42cf8d03bed34d920e2a388b260df3 Author: Alan Garny '' Date: Wed Jun 14 17:34:16 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows '(#1306).' commit 9e3be90b5c36237bebb25090159ebfbf8ecf4773 Author: Alan Garny '' Date: Wed Jun 14 15:26:10 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit e6040eea121ff2e7bc3748de11c65f5dd6f04021 Author: Alan Garny '' Date: Wed Jun 14 14:00:32 2017 +0200 Some minor cleaning up. commit abe66bb2f741d116e5ac8f2bd2fc85d05ef98bba Author: Alan Garny '' Date: Wed Jun 14 11:36:51 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows '(#1306).' commit fdce72e24a52d2c3804b9330371dc0d74bed01d0 Author: Alan Garny '' Date: Wed Jun 14 11:27:51 2017 +0200 QtWebKit package: some work on getting QtWebKit to build on Windows '(#1306).' commit 33d01fc99bb6d16d6189a81ab87de3697da4961e Author: Alan Garny '' Date: Wed Jun 14 11:22:18 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit f92a86cb13e665a5c62b6c3d32033c7d7264ea64 Author: Alan Garny '' Date: Wed Jun 14 10:58:31 2017 +0200 QtWebKit package: make sure that we can build our patch program on Windows '(#1306).' commit b0d07e232b9b3ec455c560a0e00c77a19cf48168 Author: Alan Garny '' Date: Wed Jun 14 10:13:18 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit d40cbf53720add9c2cb47d22ad2d565ba26a843f Author: Alan Garny '' Date: Wed Jun 14 10:12:16 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit 7c5fcbe6722f38d8f60cdbd4b460f7d5f31b1ee9 Author: Alan Garny '' Date: Wed Jun 14 10:02:50 2017 +0200 QtWebKit package: slight update to our README.rst file '(#1306).' commit 6176f6dc5b6442130718067cee958b23626338cf Author: Alan Garny '' Date: Wed Jun 14 09:29:32 2017 +0200 QScintilla and Qwt packages: fixed RPATH issue on macOS and therefore generated new binaries '(#1306).' Indeed, by default, to build those libraries using qmake results in $'Qt\342\200\231s' path being hard-coded while we clearly want to refer to our own copy of Qt. If we $'don\342\200\231t' do this, then we will get a couple of warnings like the ones below when, for example, running '`./OpenCOR' '-s`:' 'objc[23491]:' Class QCocoaPageLayoutDelegate is implemented in both /Users/Alan/Work/Programming/OpenCOR/build/OpenCOR.app/Contents/Framewor ks/QtPrintSupport.framework/Versions/5/QtPrintSupport '(0x113d09ec0)' and /Applications/Qt/5.6/clang_64/lib/QtPrintSupport.framework/Versions/5/Qt PrintSupport '(0x114a3bec0).' One of the two will be used. Which one is undefined. 'objc[23491]:' Class QCocoaPrintPanelDelegate is implemented in both /Users/Alan/Work/Programming/OpenCOR/build/OpenCOR.app/Contents/Framewor ks/QtPrintSupport.framework/Versions/5/QtPrintSupport '(0x113d09f10)' and /Applications/Qt/5.6/clang_64/lib/QtPrintSupport.framework/Versions/5/Qt PrintSupport '(0x114a3bf10).' One of the two will be used. Which one is undefined. commit b1768424d9a52bd04367e4404fed3fe9b6cdb01f Author: Alan Garny '' Date: Wed Jun 14 09:29:04 2017 +0200 Some minor cleaning up. commit ef79b1ba263d6d922f2f978029ed07ec0e151f2c Author: Alan Garny '' Date: Wed Jun 14 09:12:11 2017 +0200 Some minor cleaning up. commit ffa1d6c1ff4f04ea4de0d974377385997ac6dd39 Author: Alan Garny '' Date: Tue Jun 13 18:54:36 2017 +0200 Back to building QtWebKit '(#1306).' commit 96807f091824cf4644a2f8f331fcfbc90a98f0dc Author: Alan Garny '' Date: Tue Jun 13 18:53:09 2017 +0200 LLVMClang package: new binaries '(with' new file 'name)' '(#1306).' commit fda86243b363ae84a59a9dbf5c0e3bb9033c552e Author: Alan Garny '' Date: Tue Jun 13 10:22:56 2017 +0200 LLVMClang package: renamed the file name of our package '(#1306).' commit a8ab02de8b589fcc484260c2761f137e8080e0de Author: Alan Garny '' Date: Tue Jun 13 10:20:35 2017 +0200 LLVMClang package: renamed the file name of our package '(#1306).' commit 84dd20a95b26106aa14cfe4c5cce46e3b96e62fb Author: Alan Garny '' Date: Tue Jun 13 10:08:59 2017 +0200 LLVMClang package: renamed the file name of our package '(#1306).' commit 7951a60f768102ec47deb76e96971fd62063d729 Author: Alan Garny '' Date: Mon Jun 12 17:23:49 2017 +0200 QtWebKit package: can now build on macOS '(#1306).' commit 715950707b9632a9188c1fcc31680efaa82a1026 Author: Alan Garny '' Date: Mon Jun 12 16:13:46 2017 +0200 Some minor cleaning up. commit 373bfdd75a581689abf80b0ece6a460d51619182 Author: Alan Garny '' Date: Mon Jun 12 16:13:11 2017 +0200 Some minor cleaning up. commit a20ae09642e622c03997d238dc1187b7b3ffb184 Author: Alan Garny '' Date: Mon Jun 12 14:19:58 2017 +0200 QtWebKit package: make sure that our CMake files are properly patched '(#1306).' Indeed, they are generated in such a way that they can be used within the Qt file structure while we want to use them within the OpenCOR file structure. commit 711d212f3acc51170e270433ff09f2eae58ec589 Author: Alan Garny '' Date: Mon Jun 12 11:31:05 2017 +0200 Some minor cleaning up. commit b1c6dafadf42e9d66a7f68af09cd301bc5a9addc Author: Alan Garny '' Date: Mon Jun 12 11:06:54 2017 +0200 QtWebKit package: make sure that QtWebKit itself and its CMake files can be found '(#1306).' commit bb4de606ebf21b0d395737aaa4226896297cba98 Author: Alan Garny '' Date: Mon Jun 12 11:04:19 2017 +0200 Oops, forgot to update our MAKE_NMAKE_COMMAND and MAKE_JOM_COMMAND variables for parallel compilation '(#1306).' commit 65639001376944d0b4f5b2546bc962ccf80416b0 Author: Alan Garny '' Date: Sun Jun 11 10:07:01 2017 +0200 Re-enable QtWebKit-based features. commit 0fad5a5c3bc4c329732e7c7136a22acdc5f98833 Author: Alan Garny '' Date: Sun Jun 11 09:36:06 2017 +0200 QtWebKit package: make sure that CMAKE_PREFIX_PATH is properly updated '(#1306).' commit 6526f0986ffecaece4611a0761fc81d7b4d5a6b8 Author: Alan Garny '' Date: Sat Jun 10 20:15:58 2017 +0200 QtWebKit package: first '(non-working)' binaries for macOS '(#1306).' commit 46df1d7cc3432ade6a04836bbd2e1f998f7839ab Author: Alan Garny '' Date: Sat Jun 10 19:58:26 2017 +0200 Some minor cleaning up. commit f7e03a5247fbb6a1ab0232118e82366bc704e76c Author: Alan Garny '' Date: Sat Jun 10 17:37:26 2017 +0200 Some minor cleaning up. commit bcc4146aadc9affc908e93f46fe13df4fd649e36 Author: Alan Garny '' Date: Sat Jun 10 17:31:07 2017 +0200 Some minor cleaning up. commit e74cd7c41fa23a4776f255f96c2355f5e15f7175 Author: Alan Garny '' Date: Sat Jun 10 17:30:08 2017 +0200 Well, OpenSSL cannot, on Windows, be built using jom, so use nmake for it '(#1306).' commit 9904dfb5e1e21883a2ebe53cf9904a84ba57cbc7 Author: Alan Garny '' Date: Sat Jun 10 16:21:30 2017 +0200 Optime the building of our packages that need to be built without CMake '(#1306).' commit 6a02df503e989437b055fe82bbc10a09683dc59f Author: Alan Garny '' Date: Sat Jun 10 11:03:00 2017 +0200 QtWebKit package: we actually have two libraries in this package '(#1306).' commit b5dce187e049b0a60d40dd2c7940feb52d204708 Author: Alan Garny '' Date: Sat Jun 10 10:39:48 2017 +0200 Some minor cleaning up. commit 023e3ea4fdc3b423ce0a9756aa1ccadcb6bc31b2 Author: Alan Garny '' Date: Sat Jun 10 10:39:06 2017 +0200 QtWebKit package: getting ready to build on macOS '(at' 'least)' '(#1306).' commit ff0e3f4c519f30a62629ce20858d9c63db887df8 Author: Alan Garny '' Date: Sat Jun 10 00:34:04 2017 +0200 Make sure that the value of our QT_QMAKE variable is a proper filename '(and' not simply 'Qt5::qmake).' This is needed for building QtWebKit '(#1306).' commit 33d41d8e9213ed859a19d0ee28986ccee4188b44 Author: Alan Garny '' Date: Sat Jun 10 00:04:26 2017 +0200 Improved the building of our QScintilla and Qwt packages on Windows. Also made sure that the OpenSSL package gets cloned in the right place '(#1306).' commit dd7337ace038ad061ab083708b28b4d74707587d Author: Alan Garny '' Date: Fri Jun 9 19:59:12 2017 +0200 QtWebKit: some kind of template that gets us to build on macOS '(#1306).' commit 7de0ab333493f3414cf8b7781bd9a2d81b8ad177 Author: Alan Garny '' Date: Fri Jun 9 19:22:16 2017 +0200 Packages: on macOS, we 'don'\''t' need to specify the deployment target '(#1306).' Indeed, it looks like only OpenCOR itself needs to be built with that piece of information. commit f4e398f20cbb87bcd88707ec74023a91bb2720fe Author: Alan Garny '' Date: Fri Jun 9 18:39:11 2017 +0200 QtWebKit package: getting ready to build on macOS '(at' 'least)' '(#1306).' commit fdd616710636204fb4dd03cfed4f575d46c9f9d2 Author: Alan Garny '' Date: Fri Jun 9 18:03:08 2017 +0200 Some minor cleaning up. commit e9148d178b2b3b1e699ce5c45507ff28c7dbed60 Author: Alan Garny '' Date: Fri Jun 9 17:11:07 2017 +0200 Properly add QtWebKit to the build system '(#1306).' commit 7d2e21f60cdb0db3d461e0ee2712c7b13863ad64 Author: Alan Garny '' Date: Fri Jun 9 17:05:09 2017 +0200 QtWebKit package: slight update to its README.rst file '(#1306).' commit f4708c86e89018594966a01acbe0150fc58da26e Author: Alan Garny '' Date: Fri Jun 9 16:51:09 2017 +0200 Getting ready to build the QtWebKit package '(#1306).' commit 18136540a74f146ed8bde4ed69e0933fc2aa8200 Author: Alan Garny '' Date: Fri Jun 9 16:33:40 2017 +0200 Qwt package: argh, the debug version 'wasn'\''t' being built properly on Windows '(#1306).' commit 88ab815da71e750b57decbc46680b39a0b354d0c Author: Alan Garny '' Date: Fri Jun 9 15:32:26 2017 +0200 Qwt package: prevent warnings when building on Windows '(#1306).' commit b7d2fb6d1f39861d79ac00f08fcc0c4dc3f22425 Author: Alan Garny '' Date: Fri Jun 9 11:35:16 2017 +0200 Make sure that we can build our CellML file runtime class '(#1306).' commit 45cd075e33a83be3bcb804289d3446d81ddb7469 Merge: e4bb3ce1f 9074669ee Author: Alan Garny '' Date: Fri Jun 9 10:39:56 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 9074669eece1950861aef982c3b24f47cb677ae0 Merge: 5ac1374bd e4f0c6b77 Author: Alan Garny '' Date: Fri Jun 9 10:38:07 2017 +0200 Plugins: plugins are now finalised in reverse order of initialisation '(closes' '#1331).' commit e4f0c6b779aecaffdad7feb8df166ce63183c429 Author: Alan Garny '' Date: Fri Jun 9 10:03:32 2017 +0200 Some minor cleaning up. commit ebabc4eadb0a7ecaf740c6b1c10702145942f9e8 Author: David Brooks '' Date: Fri Jun 9 13:54:28 2017 +1200 Set the initial font size for our IPython window '(#1324).' commit 638e1613912b8a8ff22bc5882af6f491099add65 Author: David Brooks '' Date: Fri Jun 9 13:53:30 2017 +1200 Tidy up IPython widget creation code '(#1324).' commit 1286190b466fa4d9ab8824e1c137e7bc54168a27 Author: David Brooks '' Date: Fri Jun 9 13:52:00 2017 +1200 We need to explicitly delete our IPython container window when finalising '(#1324).' commit 4e649c27370379f800e0adf80dffff0188a9add4 Merge: 2cc4a100a 2f7581960 Author: David Brooks '' Date: Fri Jun 9 13:46:53 2017 +1200 Merge branch ''\''issue1331'\''' into pythonplugin commit 2f75819603437f86f09fcca8d78593c3959051d8 Author: David Brooks '' Date: Fri Jun 9 13:42:26 2017 +1200 Finalise plugins in the reverse order to their initialisation '(#1331).' commit e4bb3ce1f076e2b3f2727e0c30e2a6e1aa171ffc Author: Alan Garny '' Date: Thu Jun 8 23:21:03 2017 +0200 Re-enable all non-QtWebKit plugins '(#1306).' commit 380c9c7a62561fe8df0fabb37dc168dcca92351f Author: Alan Garny '' Date: Thu Jun 8 23:19:30 2017 +0200 LLVMClang package: Linux binaries for Windows '(#1306).' commit a4b9d123b8dcb194b20907d8d83bc4cdbd2af687 Author: Alan Garny '' Date: Thu Jun 8 23:19:07 2017 +0200 LLVMClang package: debug binaries for Windows '(#1306).' commit 8212dd5a6ea0919e7090c910c56d1711a73efc14 Author: Alan Garny '' Date: Thu Jun 8 19:53:44 2017 +0200 LLVMClang package: release binaries for Windows '(#1306).' commit f70b77d1215ed48dd88dec8939e785084225b712 Author: Alan Garny '' Date: Thu Jun 8 18:43:14 2017 +0200 LLVMClang package: new binaries for macOS '(#1306).' commit d31f6fdf427fc1b9e04ed1859814d519b5e0d36f Author: Alan Garny '' Date: Thu Jun 8 16:05:02 2017 +0200 LLVMClang package: use our v4.0.0 Git tag '(#1306).' commit 2ff5d6667a7784cc4085b021dc46aa018b163a4d Author: Alan Garny '' Date: Thu Jun 8 15:56:54 2017 +0200 LLVMClang package: on Windows, we want our library to be named LLVMClang.4.dll/.lib '(#1306).' The idea is so that it can be distinguished from our LLVMClang plugin, which filename is LLVMClang.dll. commit 0a4ef55a757a22da0586262791c8e9ce2c59cbdf Author: Alan Garny '' Date: Thu Jun 8 10:09:12 2017 +0200 LLVMClang package: build only one single shared library now '(#1306).' commit a36c66988bcdb0a9d9eb93b7bc9634b59a07b343 Author: Alan Garny '' Date: Thu Jun 8 09:29:51 2017 +0200 LLVMClang package: build only one single shared library now '(#1306).' commit e8ab739a11f77c977e9024acc1ebd768b56daafa Author: Alan Garny '' Date: Thu Jun 8 00:54:23 2017 +0200 LLVMClang package: only build one shared library '(#1306).' We used to build both an LLVM and Clang shared library, but although it works fine on Linux and macOS, it proves crazy on Windows. Indeed, our Clang shared library would need access to loads of LLVM symbols while we only expose those that we need in OpenCOR. To expose all the symbols needed by Clang would be a lot of work, hence we now build only one shared library instead. commit 61b099f44b89805c0506979467bc93f48d53a4ee Author: Alan Garny '' Date: Wed Jun 7 23:04:31 2017 +0200 LLVMClang package: allow for big objects on Windows '(#1306).' commit fabf57334c9d2a46b69b3cee674944873665fe71 Author: Alan Garny '' Date: Wed Jun 7 21:17:51 2017 +0200 Making sure that we can build our LLVMClang package on Windows '(#1306).' commit eae8101dbae0cf1932c18f1a90a77ce1ffa0cc3e Author: Alan Garny '' Date: Wed Jun 7 19:04:30 2017 +0200 Back to build our LLVMClang package only '(#1306).' commit 2cc4a100adac1a25fbcfd66a3fcb518732a77673 Merge: b462910da 5ac1374bd Author: David Brooks '' Date: Wed Jun 7 14:17:10 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit b462910daa4c13d8fed25f0c3a8028d260e4ae9b Author: David Brooks '' Date: Tue Jun 6 21:55:25 2017 +1200 Use an IPython console for Python '(#1324).' commit 5bf45813d7003ba00302db3c7d1959b761f07522 Author: Alan Garny '' Date: Tue Jun 6 16:34:19 2017 +0200 QtWebKit package: removed our old CMake code '(#1306).' commit 029be182ccf2a80076bd268ec4dc5d129117cff0 Author: Alan Garny '' Date: Tue Jun 6 15:50:47 2017 +0200 'Don'\''t' build any plugins anymore '(#1306).' So that we can then focus on our QtWebKit package. commit 0fb0795ef283d3872cc66bb005964808f4043101 Author: Alan Garny '' Date: Tue Jun 6 15:44:42 2017 +0200 Removed our local copy of 'QtWebKit'\''s' include and CMake files '(#1306).' commit db969e61c9b39a2b427f05c2581f93e371c60ed6 Author: Alan Garny '' Date: Tue Jun 6 15:43:59 2017 +0200 Some minor cleaning up. commit 1e8ef3d1d089573fff7cf0624df9fde75c4470fb Author: Alan Garny '' Date: Tue Jun 6 13:50:43 2017 +0200 LLVMClang package: new Linux binary '(#1306).' commit 8bbd91a0b67aae9fe883fa6d316e66e2a07a244b Author: Alan Garny '' Date: Tue Jun 6 12:32:55 2017 +0200 QtWebKit package: started updating our README.rst file '(#1306).' commit 91c071cdf68588ec0944838333c2351f0e796a89 Author: Alan Garny '' Date: Tue Jun 6 11:54:58 2017 +0200 Qwt package: added a small README.rst file '(#1306).' commit d6cd963295c59143b4f0b4d755717064cfd5ff25 Author: Alan Garny '' Date: Tue Jun 6 11:27:09 2017 +0200 Back to building our LLVMClang package '(#1306).' commit fd0ec3aed4ba5a6634122ee7f9aaaa4db16f9eb7 Author: Alan Garny '' Date: Tue Jun 6 11:26:26 2017 +0200 QScintilla and Qwt packages: generated new binaries '(#1306).' commit dbd71fe3ea9c25a453a8d972ddc4032352c6c2c8 Author: Alan Garny '' Date: Tue Jun 6 10:55:30 2017 +0200 Need to rebuild our QScintilla and Qwt packages '(#1306).' This is because our pre-built versions rely on Qt 5.9 LTS while we decided to go back to Qt 5.6.2 LTS. commit 3f7bd398105a432b0bf71109d95bb923c708c652 Author: Alan Garny '' Date: Tue Jun 6 10:53:01 2017 +0200 LLVMClang package: new macOS binary '(#1306).' commit a980dcd0a124de2ed05017e90b0af5a8aff941f9 Author: Alan Garny '' Date: Tue Jun 6 10:34:00 2017 +0200 Back to building our LLVMClang package '(#1306).' commit 70c43c5d6f1c28fb9c0bc373ca4276c3a0c90502 Merge: f8a75ca6a 5ac1374bd Author: Alan Garny '' Date: Tue Jun 6 10:25:22 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 5ac1374bd74a641218a1a55c804f452ca4c40f1f Merge: 801a27c14 9987cbfac Author: Alan Garny '' Date: Tue Jun 6 10:20:46 2017 +0200 OpenSSL: upgraded to version 1.0.2l '(closes' '#1318).' commit 9987cbfac9464a1693668fd2cc13f184ed049cd4 Author: Alan Garny '' Date: Tue Jun 6 09:48:53 2017 +0200 Slight update to our downloads page '(#1318).' commit 8cc912a1e42ea5c01bfb7696177b7f8ad7efb7d9 Author: Alan Garny '' Date: Tue Jun 6 09:44:59 2017 +0200 OpenSSL package: generated 1.0.2l binaries '(#1318).' commit 79fdd3aa3996949baa944b3e7556ebd1a668d7c1 Author: Alan Garny '' Date: Tue Jun 6 09:16:20 2017 +0200 Getting ready to build version 1.0.2l of the OpenSSL package '(#1318).' commit c2dafa57db0f2d277ccce83533666c75f8b78a2f Author: Alan Garny '' Date: Tue Jun 6 09:00:44 2017 +0200 Slight update to our prerequisites page following the release of Xcode 8.3.3. commit f8a75ca6acf15e29374c53dbf7445b327da19e6a Merge: e6503092c 801a27c14 Author: Alan Garny '' Date: Mon Jun 5 23:31:18 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 801a27c1436eb8df3f7c58cc42360471ca1c9411 Merge: b1f8155e9 884db7c9b Author: Alan Garny '' Date: Mon Jun 5 23:13:53 2017 +0200 Some minor cleaning up. commit 884db7c9b65acc1d287e82c2fcc553cf46344147 Author: Alan Garny '' Date: Mon Jun 5 22:21:07 2017 +0200 Some minor cleaning up. commit e6503092cd8c068fb7bb7d6733ca1af9d3222937 Author: Alan Garny '' Date: Mon Jun 5 22:19:09 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit b1f8155e9ae2b2e723bd2389c2d11c60dfccef38 Merge: ab2e2be87 9f79705d1 Author: Alan Garny '' Date: Mon Jun 5 21:57:57 2017 +0200 Various cleaning ups. commit 9f79705d169bf1ba08c90855085cc1da590fc3c5 Author: Alan Garny '' Date: Mon Jun 5 21:03:25 2017 +0200 CMake: merged our former 'INITIALISE_PROJECT()' macro into our main CMakeLists.txt file. commit dacce39c7d8e87a7e88e44f8ff1cdccd2bb88a4b Author: Alan Garny '' Date: Mon Jun 5 20:56:00 2017 +0200 Removed various 'constructor()' methods. Fixed a small problem following commit 6642776. commit b2a2cd099e5f24a50f35c3ea67f00b693b3b461c Author: Alan Garny '' Date: Mon Jun 5 19:37:08 2017 +0200 Make sure that our packages get build using our OpenCOR release mode. commit b814c4a283fde3ceae88970964b3adbc6503bb1c Author: Alan Garny '' Date: Mon Jun 5 19:36:12 2017 +0200 Some minor cleaning up. commit e093d933e1da7c8623fad86c1d2197d1a5868669 Author: Alan Garny '' Date: Mon Jun 5 18:48:06 2017 +0200 OAuth package: rely on a special release tag '(#1306).' commit b43d9df9bb9b6cdcba75f30938891476f2472e61 Author: Alan Garny '' Date: Mon Jun 5 18:28:52 2017 +0200 Getting ready to check that our OAuth package binaries are fine '(#1306).' commit 3ed086a0c374a8be223181a285a961342ca353c9 Author: Alan Garny '' Date: Mon Jun 5 18:28:00 2017 +0200 OAuth package: new binaries '(#1306).' commit d223235cd4a38e948153b4f35037bbeae0eaf7e7 Author: Alan Garny '' Date: Mon Jun 5 18:02:18 2017 +0200 Getting ready to build our OAuth package '(#1306).' commit 04b690ad231ffbfc01844603952aa15bf0fcb17a Merge: 3954c7977 ab2e2be87 Author: Alan Garny '' Date: Mon Jun 5 15:09:58 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit ab2e2be871fc52269dd0a4af08f5bef0a89ad4dd Merge: f22bc1e53 1363bdda5 Author: Alan Garny '' Date: Mon Jun 5 15:05:36 2017 +0200 Reverted to Qt 5.6.2 LTS. commit 1363bdda5eecbd6bc30b8a2844d91bee5b534d42 Author: Alan Garny '' Date: Mon Jun 5 14:00:28 2017 +0200 Updated our prerequisites and downloads pages. commit 3954c7977a01174ac4d6d6c14bd708fef815f8bf Merge: d11cef46f f22bc1e53 Author: Alan Garny '' Date: Sun Jun 4 16:30:24 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit f22bc1e53ac59f21aabb2f9f7079016192cb3906 Merge: e9d9803b1 66427767f Author: Alan Garny '' Date: Sun Jun 4 16:27:38 2017 +0200 Removed various 'constructor()' methods. commit 66427767f4c39794652f578181655f2efbca4cd8 Author: Alan Garny '' Date: Sun Jun 4 15:53:08 2017 +0200 Removed various 'constructor()' methods. commit d11cef46f2a00b023aa4ba9da6a735278ab9e0a7 Author: Alan Garny '' Date: Fri Jun 2 21:51:51 2017 +0200 Rebuilt the QScintilla and Qwt packages '(#1306).' commit 494f3b53dfd034f5f73ca158ae53b5a06411051c Author: Alan Garny '' Date: Fri Jun 2 19:58:15 2017 +0200 Getting ready to rebuild our Qt-based packages '(#1306)' commit 478acd5067c75c600d2d4a051eb453a60fd8bf92 Merge: 31bd95287 0e1956c5c Author: Alan Garny '' Date: Fri Jun 2 19:36:52 2017 +0200 Qt 5.9 LTS: remove our dependency on Lucene '(which' is not needed 'anymore)' '(#1311).' commit 0e1956c5c3914439ffd95fef32e6f4dd68870f13 Author: Alan Garny '' Date: Fri Jun 2 13:35:15 2017 +0200 Qt 5.9 LTS: remove our dependency on Lucene '(which' is not needed 'anymore)' '(#1311).' commit a625ab7a2f05bc7c9352ae7e1605eff3e1c7bfb1 Author: David Brooks '' Date: Fri Jun 2 11:48:03 2017 +1200 PythonWrapper plugin has to have a CMake dependency on PythonPackages plugin '(#1310).' commit 39aadd13474fdbe96382bb8d0ffedd403792453d Author: David Brooks '' Date: Fri Jun 2 11:46:44 2017 +1200 New Python binaries with runtime library sources bundled '(#1310).' commit 125d3c9078bcf413c502d069a2db2e1c66a1d1ed Author: David Brooks '' Date: Fri Jun 2 11:42:50 2017 +1200 New PythonQt binaries for Qt 5.9 '(#1311).' commit 232cbfa14244bb20d0cc54d553c1a9c148c190ad Merge: e43928922 e9d9803b1 Author: David Brooks '' Date: Fri Jun 2 10:39:57 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 31bd952876499bc3221b1ed35c3219b466a2e66b Merge: 3b5b74ffe e9d9803b1 Author: Alan Garny '' Date: Thu Jun 1 21:01:00 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit e9d9803b1f41b0395692a6d88821c911f4f8aecd Merge: a488148fc c0fceed73 Author: Alan Garny '' Date: Thu Jun 1 20:44:35 2017 +0200 Qt: upgrade to Qt 5.9 LTS '(closes' '#1311).' commit c0fceed7374c18a34378a57d216e510ba59a3460 Author: Alan Garny '' Date: Thu Jun 1 18:57:01 2017 +0200 Qt 5.9 LTS: slight update to our downloads page '(#1311).' commit 40e1e9fc7ba3f014e54c98a85940d1cfb43063ff Author: Alan Garny '' Date: Thu Jun 1 18:56:47 2017 +0200 Qt 5.9 LTS: updated our supported platforms '(#1311).' commit 73be7a31ef1652bbf34636f39977e3310ebd96a5 Author: Alan Garny '' Date: Thu Jun 1 18:52:26 2017 +0200 Oops, forgot to remove a ''\''test'\''' '(#1311).' commit bdaa113d1c07e4aaad6a133f29a967876e552018 Author: Alan Garny '' Date: Thu Jun 1 18:51:48 2017 +0200 Qt 5.9 LTS: replaced calls to 'QModelIndex::child()' '(which' is now 'obsolete)' with calls to 'QAbstractItemModel::index()' '(#1311).' commit b7024e3127f3c20de116829b85613f9569799bba Author: Alan Garny '' Date: Thu Jun 1 18:33:40 2017 +0200 Qt 5.9 LTS: replaced instances of QString::null with 'QString()' in Qwt '(#1311).' commit 9a8312e46427bf79368d80c77877f75a530d69fb Author: Alan Garny '' Date: Thu Jun 1 18:08:51 2017 +0200 Qt 5.9 LTS: support OS X 10.10 and later '(#1311).' commit dd658eab5ff81881b8996e1dac3c16701715d064 Author: Alan Garny '' Date: Thu Jun 1 18:05:10 2017 +0200 Slight update to the developer documentation '(#1311).' commit 3b5b74ffe28f230176990b238e1d7edb9d3fd44d Author: Alan Garny '' Date: Thu Jun 1 17:30:13 2017 +0200 LLVMClang package: make sure that we can build on Windows '(#1306).' commit 940f0882f5042fae78b241f4cb384f934f4d472b Author: Alan Garny '' Date: Thu Jun 1 13:30:53 2017 +0200 LLVMClang package: added '(temporary?)' binaries for macOS '(#1306).' commit e43928922d2cc68bbf62f676ccac602ad7e2fd55 Author: David Brooks '' Date: Thu Jun 1 13:07:33 2017 +1200 Tweaks and new binaries for PythonQt '(#1306).' commit edcc8a100de0dc77bf47a5eff0dc7133b536ad4e Author: Alan Garny '' Date: Wed May 31 15:44:48 2017 +0200 Packages: build our packages using the same CMake generator as the one used for OpenCOR '(#1306).' Argh, I did it the wrong way in commit 03ce7a2. commit e79c01b9126d7f286ec716de81d7b90c76d6eead Author: Alan Garny '' Date: Wed May 31 15:17:59 2017 +0200 Some minor cleaning up. commit 03ce7a23e7b65fa408e3eb800a9b4af9418f2576 Author: Alan Garny '' Date: Wed May 31 14:29:27 2017 +0200 Packages: build our packages using the same CMake generator as the one used for OpenCOR '(#1306).' commit b9e4b136ae60cae132b2f4df93c697e3c87da101 Author: Alan Garny '' Date: Wed May 31 13:13:19 2017 +0200 LLVMClang package: 'don'\''t' disable CLANG_PLUGIN_SUPPORT anymore '(it'\''s' not used on Linux, at 'least)' '(#1306).' commit d587adb59148090951aa71be2f7aa80e6a6d367b Author: Alan Garny '' Date: Wed May 31 12:51:47 2017 +0200 LLVMClang package: can now build on macOS '(#1306).' commit dd3419c0ee92d3e6594664830af7abfc86f6ea06 Author: Alan Garny '' Date: Tue May 30 10:47:41 2017 +0200 OpenSSL package: update SHA-1 values '(#1306).' commit ec649422f15efa28996b906dab8538b670690617 Author: Alan Garny '' Date: Mon May 29 19:52:49 2017 +0200 Slight update to our developer documentation. commit 686147be05b14725db2ba1a8c655e2b291b7d8a4 Author: Alan Garny '' Date: Mon May 29 19:48:09 2017 +0200 Slight improvement to our cleaning scripts. commit 85218637e142321000627ade3974f8afb358d387 Author: Alan Garny '' Date: Mon May 29 19:41:22 2017 +0200 Slight improvement to our cleaning scripts. commit ea8037e1dc2fe0ba5876dce563e1d5723ebaf399 Author: Alan Garny '' Date: Mon May 29 19:27:50 2017 +0200 LLVM package: how our CMakeLists.txt file should look like '(#1306).' However, for this to work, we will need to patch our copy of LLVM+Clang so that we can generate proper shared libraries for both LLVM and Clang. Indeed, on macOS, for example, we can generate a proper LLVM shared library out of the box, but not a proper Clang one '(!?).' commit 8749fdceeb9d9c171748ee2aae65521497389901 Author: Alan Garny '' Date: Mon May 29 19:23:37 2017 +0200 Packages: make sure that we build them for the OS X / macOS version we are after '(#1306).' commit c008e1d7437e23b55f162f7aafc80588390651f5 Merge: c20e63ee2 e1ac45a48 Author: Alan Garny '' Date: Mon May 29 10:59:37 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit e1ac45a487ee38b61fef78a4f5312c9b9887cb74 Author: Alan Garny '' Date: Mon May 29 10:55:06 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit c20e63ee2f09fbb29af3024cc0dfe208db2de224 Author: Alan Garny '' Date: Sun May 28 16:46:53 2017 +0200 Some minor cleaning up. commit 004faa705fa8fe1e732bab1f0b2b704872b0bf5c Author: Alan Garny '' Date: Sun May 28 16:45:18 2017 +0200 LLVM+Clang package: Linux binaries '(#1306).' commit f5a776c3b7e9fca9b965fb764dfa9e1bd218983a Author: Alan Garny '' Date: Sun May 28 15:31:24 2017 +0200 LLVM+Clang package: some minor cleaning up '(#1306).' commit 795d272a357b46743652f96a0f59cebccd05952c Author: Alan Garny '' Date: Sun May 28 15:11:27 2017 +0200 Some minor cleaning up. commit b22b1004f2c0cf1d54f82b789769aa7d9919462b Author: Alan Garny '' Date: Sun May 28 15:07:55 2017 +0200 LLVM+Clang package: new binaries on macOS '(#1306).' commit d1ea4ddbae1d24293b33b9d17e09a5b00d7f29d9 Author: Alan Garny '' Date: Sun May 28 15:07:21 2017 +0200 Renamed our LLVM plugin to LLVMClang to avoid filename conflicts '(#1306).' Indeed, on macOS '(at' 'least),' the shared library of our LLVM plugin was libLLVM.dylib, which was also the name of our LLVM $'package\342\200\246' commit 6e442403f56a8e244f06c4f8ece505db3175923d Author: Alan Garny '' Date: Sun May 28 11:32:46 2017 +0200 LLVM package: now have binaries for Linux and macOS '(#1306).' commit 4f7be211fc7a18250c867ca2a1294b2e4ec1b130 Author: Alan Garny '' Date: Sun May 28 10:58:13 2017 +0200 LLVM package: two binaries are actually being built, one for LLVM itself and another for Clang '(#1306).' commit 48994f471dd267ad71bb863a59c0d054893bd714 Author: Alan Garny '' Date: Sun May 28 10:49:52 2017 +0200 OpenSSL package: oops, forgot to remove the INCLUDE_DIRS option in our call to our ''\''new'\''' 'ADD_PLUGIN()' macro '(#1306).' commit ac7c1c5ff28a134d9474c85c2ba14b46177dea5d Author: Alan Garny '' Date: Sun May 28 09:17:53 2017 +0200 Slight update to our developer documentation. commit 345b44e31e8db1fe5dc3f290b76cda1ecd8561b6 Author: Alan Garny '' Date: Sun May 28 09:14:27 2017 +0200 General: have our cleaning script clean everything only when explicitly requested. commit fbf651715f6f14c018c024992f91f64055eddf24 Author: Alan Garny '' Date: Sun May 28 08:56:04 2017 +0200 LLVM package: removed our llvmglobal.h file and made sure that our Compiler plugin properly refers to LLVM '(#1306).' commit 861b1b91e6fdc8f10eeaa34f4e387fd359e33230 Author: Alan Garny '' Date: Sun May 28 08:27:17 2017 +0200 LLVM package: can now build LLVM on macOS '(#1306).' commit 52a495a41de1e26a9d5fa992d9b82629ecf7d5da Author: Alan Garny '' Date: Sun May 28 00:25:02 2017 +0200 Some minor cleaning up. commit 222911b5e3bef4f35448aff2eddedbec7179a116 Author: Alan Garny '' Date: Sat May 27 23:42:53 2017 +0200 Getting ready to test LLVM once again '(#1306).' commit 051940a8884446eb39a185b1978673c935e8bf0e Author: Alan Garny '' Date: Sat May 27 23:37:29 2017 +0200 Zinc package: binaries for Windows, Linux and macOS '(#1306).' commit 54b55f9de55cbd067658c77b9d1d2dbd8203e381 Author: Alan Garny '' Date: Sat May 27 20:04:02 2017 +0200 Zinc package: finally found the right settings for building Zinc on Windows '(#1306).' commit b469231afc1c22d338650a4f9516635d9db11dde Merge: f11a8c97b a488148fc Author: Alan Garny '' Date: Sat May 27 14:07:32 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit a488148fcb03b6c9aa72a3819328dfa001ed2fe6 Merge: 029080416 403cc05a0 Author: Alan Garny '' Date: Sat May 27 11:47:36 2017 +0200 General: make it possible to open remote binary files '(closes' '#1319).' commit 403cc05a0b48cce7de55a5b9a57ab7b2eb97f254 Author: Alan Garny '' Date: Sat May 27 11:04:52 2017 +0200 OpenSSL package: update the SHA-1 values of some binaries. commit c0527f0182f001cd1a24f30dc3422da34247541c Author: Alan Garny '' Date: Sat May 27 10:19:15 2017 +0200 Slight update to our downloads page '(#1319).' commit 92b1b91c8085382d77b44e90f7ed3f3ad68b177f Author: Alan Garny '' Date: Sat May 27 10:06:14 2017 +0200 Can now load '(and' 'run)' a remote COMBINE archive '(#1319).' commit a2e83c90454a0fa8b3a473448679622e1f497cdf Author: Alan Garny '' Date: Sat May 27 09:30:22 2017 +0200 Allow binary files to be created/loaded '(especially' remotely when it comes to 'loading)' '(#1319).' commit 48be8d107e2ad06920346d0e430c429649306ce5 Author: Alan Garny '' Date: Sat May 27 09:26:35 2017 +0200 Some minor cleaning up. commit f11a8c97b6dc9ae2126b8c51cd1ce8d96b1fe98d Author: Alan Garny '' Date: Sat May 27 08:39:35 2017 +0200 Zinc package: some minor cleaning up '(#1306).' commit db64f7f7e6c302c7955f190c2544e91f7147493b Author: Alan Garny '' Date: Sat May 27 08:06:45 2017 +0200 Zin package: make sure that we are really building for 64-bit Windows '(#1306).' commit 029080416d2da80c855a1647fa4aeb370e740865 Author: Alan Garny '' Date: Fri May 26 23:36:44 2017 +0200 OpenSSL package: updated our macOS SHA-1 values '[ci' 'skip].' commit a5cccf205c470664d6c67007fb9118bf21bde586 Author: Alan Garny '' Date: Fri May 26 23:36:43 2017 +0200 OpenSSL package: updated our macOS SHA-1 values '(#1306).' commit 6b4daefc5e0729389afbb7b2c0189a1efc41b9ad Author: Alan Garny '' Date: Fri May 26 21:27:28 2017 +0200 Clean batch/shell script: now clean or remove our different ext folders. commit cf3e8b17534d29ac359dc03f5a9aca0b8b87d617 Author: David Brooks '' Date: Fri May 26 23:07:28 2017 +1200 Get '`qmake`' PythonQt build working on Linux '(#1310).' commit 03fef78d483338aed86d11ae65bb94ba738ee6de Author: Alan Garny '' Date: Fri May 26 08:55:16 2017 +0200 Some minor cleaning up. commit 1e37a2e64985b27fcaeca0bfc6249ade1ce94286 Author: Alan Garny '' Date: Thu May 25 22:56:53 2017 +0200 Some minor cleaning up. commit e486ac169485b2bc5b8b6769a31001ab17b4d75a Author: Alan Garny '' Date: Thu May 25 22:45:32 2017 +0200 Some minor cleaning up. commit d4489cb26705d6c802ee74b028225aebd5e8c8d9 Author: Alan Garny '' Date: Thu May 25 22:18:19 2017 +0200 Zinc package: make sure that we generate 64-bit binaries on Windows '(#1306).' commit 1a4a243e781746b8f086a9acb5cbe7afb861826b Author: Alan Garny '' Date: Thu May 25 21:41:07 2017 +0200 Some minor cleaning up. commit a3f00f1ee9d5dc21327201fb7486318ddea58ebc Author: Alan Garny '' Date: Thu May 25 21:14:13 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows '(#1306).' commit 618b81350fd1cd30556df3a08bc3f735964459a3 Author: Alan Garny '' Date: Thu May 25 20:37:41 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows '(#1306).' commit 17dcb0093fadf2531311d40dceb584e245190ada Author: Alan Garny '' Date: Thu May 25 20:26:34 2017 +0200 Zinc package: we need our .dll and .lib files to be in the same place on Windows '(#1306).' commit 91b53abba1e06d40e4273903914f1a00a5e91ea5 Author: Alan Garny '' Date: Thu May 25 20:07:38 2017 +0200 Zinc package: the name of the debug version on Windows at least '(#1306).' commit 5106f41034e1196fa9995695e27012a59fe01183 Author: Alan Garny '' Date: Thu May 25 19:58:35 2017 +0200 Zinc package: the build type is to be specified using OPENCMISS_CONFIG_BUILD_TYPE rather than CMAKE_BUILD_TYPE '(#1306).' commit 14d2820a272c7056d7b0db96eacc23ce1fdd1f3c Author: Alan Garny '' Date: Thu May 25 17:08:46 2017 +0200 Oops, forgot to update something in the Zinc 'plugin'\''s' CMakeLists.txt file '(see' commit '7830ca6;' '#1306).' commit 7830ca6211547fd79a6fc0eee4e707efd5c738a6 Author: Alan Garny '' Date: Thu May 25 16:18:25 2017 +0200 Move the source code of external packages to '[OpenCOR]/ext' '(#1306).' Indeed, Zinc builds $'\342\200\230in' $'source\342\200\231' and although it builds fine on Linux and macOS, it eventually fails on Windows due to file paths being too long. So, we move external package files as high up our OpenCOR file structure as possible. commit 18422c6911d6979489e54b761446fb79d19acd5e Author: Alan Garny '' Date: Thu May 25 15:48:11 2017 +0200 Some minor cleaning up. commit fb40b5770a5fbdce1d56dd1b3ffc74ecf45128fe Author: Alan Garny '' Date: Thu May 25 15:34:44 2017 +0200 Back to building the Zinc package only '(#1306).' commit 8aad69c63b3a7998fb2fcd48eeb521742eef1c47 Author: Alan Garny '' Date: Wed May 24 23:52:15 2017 +0200 CMake: need to look for the Gui module before we can look for the WebKit one. commit bb5daff297bda897c7b198e0c9732ea1745aa748 Author: Alan Garny '' Date: Wed May 24 20:18:43 2017 +0200 CMake: make sure that QtWebKit is retrieved before looking for it locally '(!!).' commit f98ff0ad52e6a329104ffd2ccba3cd9b0b890a02 Author: Alan Garny '' Date: Wed May 24 19:30:13 2017 +0200 LLVM package: specify some options '(#1306).' commit 72fc66c77c8ccb074dd07ed25f8139f6ba7c99cd Author: Alan Garny '' Date: Wed May 24 19:12:35 2017 +0200 LLVM package: specify some options '(#1306).' Note: we disabled quite a few things here, so some of those options may end up being reenabled. commit ebfe2e8d1c166ad8dba148b15f4c2432924015b8 Author: Alan Garny '' Date: Wed May 24 19:01:24 2017 +0200 Some minor cleaning up. commit a5b28d61e2804ae446d97364da82a62f407090d9 Author: Alan Garny '' Date: Wed May 24 18:48:25 2017 +0200 Some work on the LLVM package '(#1306).' - Replaced USE_PREBUILT_LLVM_PLUGIN with 'USE_PREBUILT_LLVM_PACKAGE;' - Re-enabled LLVM-related 'plugins;' - Only build the LLVM plugin for 'now;' and - Initial CMake file for our $'\342\200\230new\342\200\231' LLVM plugin. commit 4ad6d636178b2fc970e223df3824e92d60d6440b Author: Alan Garny '' Date: Wed May 24 18:38:05 2017 +0200 LLVM package: removed our local copy of LLVM+Clang, and our associated README.rst file '(#1306).' commit 35150d316df89589a48de88c9bf7588f68bcbbb9 Author: Alan Garny '' Date: Wed May 24 16:51:42 2017 +0200 Some minor cleaning up. commit 75a89487937eee4d6cdafe79d37cec87859047ed Author: Alan Garny '' Date: Wed May 24 16:51:14 2017 +0200 CMake: we actually need to set CMAKE_INCLUDE_CURRENT_DIR to ON '(#1306).' commit f195b1f3328466337b5dfc6528ad1693655628cb Author: Alan Garny '' Date: Wed May 24 16:45:48 2017 +0200 CMake: oops, was trying to use a not-yet-defined variable '(#1306).' commit 42681a633cccc243b108d33c982a8e871dadb719 Author: Alan Garny '' Date: Wed May 24 16:37:18 2017 +0200 Some minor cleaning up. commit 694dcdd724999e2c8b13a658643141df4216fe9c Author: Alan Garny '' Date: Wed May 24 16:35:32 2017 +0200 Zinc package: generated Linux and macOS binaries '(#1306).' commit 692b65589dccbadb7360bbf2519e85d163623578 Author: Alan Garny '' Date: Wed May 24 16:34:08 2017 +0200 CMake: removed some macros that are not being used anymore or soon not to be used anymore '(#1306).' commit 17d1db827246069a2c25287f7b05d79d4ccb2a01 Author: Alan Garny '' Date: Wed May 24 16:30:51 2017 +0200 CMake: moved the contents of our 'INITIALISE_PROJECT()' macro to our main CMakeLists.txt file '(#1306).' This is something that we should probably have done long ago, but now is the time '(as' I am waiting for Zinc to 'build…).' commit 3160b9a86d650ee415d602eaa1822bc3a17c7ed7 Author: Alan Garny '' Date: Wed May 24 16:04:27 2017 +0200 Removed our 'ADD_PLUGIN_BINARY()' macro since 'it'\''s' soon not to be used anymore '(#1306).' commit 3893b22672bcf981505f1d8c80e23c9a07b27aa4 Author: Alan Garny '' Date: Wed May 24 15:28:40 2017 +0200 Zinc library: on Windows, we get told a problem with the Fortran compiler '(!),' so now trying to build Zinc the ''\''recommended'\''' way '(#1306).' commit cbfceb3db94b40975e34ef590c99e58a6996cef6 Author: Alan Garny '' Date: Wed May 24 14:36:50 2017 +0200 Zinc package: can now build on macOS '(#1306).' commit 873baa1adac77a3e9c75dfa2dbbd5c9560feb6a6 Author: Alan Garny '' Date: Wed May 24 13:28:16 2017 +0200 Some minor cleaning up. commit ddb4be62c87916087c7587bfd251ab914b472424 Author: Alan Garny '' Date: Wed May 24 13:07:54 2017 +0200 Slight update to our prerequisites page. commit 018eed293259291973dd28a5ee9b716b4bd3af7d Author: Alan Garny '' Date: Wed May 24 11:43:25 2017 +0200 Zinc package: first go at building it '(#1306).' commit b3aa7a1650b91b1a452721b882dfd3065d63944a Author: Alan Garny '' Date: Wed May 24 11:39:42 2017 +0200 zlib package: some minor cleaning up '(#1306).' commit 75ef7d3e40525dfbcf12b5c1f3ecb4f71565e25d Author: Alan Garny '' Date: Wed May 24 10:40:41 2017 +0200 Zinc package '(#1306).' - Added the USE_PREBUILT_ZINC_PACKAGE option. - Re-enabled building Zinc-related plugins. - Removed the Zinc-related README.rst file. - Removed our local copy of the Zinc include files. commit 17b5808ab4dd04f4ae1414d9d09fdcbad963aa8c Author: Alan Garny '' Date: Wed May 24 10:32:31 2017 +0200 Removed our '[OpenCOR]/src/plugins/thirdParty/README.rst' file. commit 04a8d4054eb79f33fe64a9dda5be4226605c637a Author: Alan Garny '' Date: Tue May 23 20:20:39 2017 +0200 Some minor cleaning up. commit bb9f5c4f236911bb64b8e6b9c808b1f8e580168c Merge: 627db362c 43d8efd8c Author: Alan Garny '' Date: Tue May 23 20:19:00 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 43d8efd8cc73e1662a1ccedbce4e44efd8f75481 Merge: d0c43228f fab1e28fd Author: Alan Garny '' Date: Tue May 23 20:16:06 2017 +0200 Some cleaning up. commit 627db362cf37df4011f2100e1eca98ceecca3b9e Author: Alan Garny '' Date: Tue May 23 20:13:40 2017 +0200 CMake: no need to specify anymore that a plugin is a third-party plugin '(#1306).' commit 8236180d75444a9b76b4e681abfe6dbf036b2da1 Author: Alan Garny '' Date: Tue May 23 20:10:34 2017 +0200 CMake: plugins can now be listed in any order '(dependencies' are determined 'automatically).' commit 2655a37e3d2f3f3942994ca8f13653ef15803757 Author: Alan Garny '' Date: Tue May 23 19:25:58 2017 +0200 Some minor cleaning up. commit fab1e28fdfba22a75954d938379c2e77561a2d05 Author: Alan Garny '' Date: Tue May 23 19:14:58 2017 +0200 Some minor cleaning up. commit 2090c5bf4864e3d46c7da3aa2d5807a68465893b Author: Alan Garny '' Date: Tue May 23 19:14:21 2017 +0200 Updated the binaries of our OpenSSL and zlib packages '(on' 'Windows).' commit 9163f3856cab0b9b6ff6e8c781384440823d519f Author: Alan Garny '' Date: Tue May 23 19:11:26 2017 +0200 Some minor cleaning up. commit 9c694b7e39aea78b04bd6148b772219fa86abcd2 Author: Alan Garny '' Date: Tue May 23 18:50:07 2017 +0200 Updated the Windows binaries for the OpenSSL, QScintilla, Qwt, SUNDIALS and zlib packages '(#1306).' commit c3d3d1f02b84ded94e116d384fca0dd0425b34eb Author: Alan Garny '' Date: Tue May 23 17:53:31 2017 +0200 Updated the Windows binaries for the libgit2, LibXDiff and o2 packages '(#1306).' commit 3be4e6c515c7bb2d689d16c7020dcce8b5c8ddd2 Author: Alan Garny '' Date: Tue May 23 17:40:53 2017 +0200 Updated the Windows binaries for CellML API, libCellML and libSEDML packages '(#1306).' commit 6ab5c04796d92a3cdf85c68abdc0fecb7e40514a Author: Alan Garny '' Date: Tue May 23 17:13:11 2017 +0200 Some minor cleaning up. commit a4d7fed7e17e8d3678c701e1db0f05066addaf57 Author: Alan Garny '' Date: Tue May 23 15:51:34 2017 +0200 Some minor cleaning up. commit c32e4321582685bb1c46b176d65c4415cf7b1e73 Author: Alan Garny '' Date: Tue May 23 14:55:51 2017 +0200 Some minor cleaning up. commit ea767de7e59e8f70b537f9af01d96b36455c72a2 Author: Alan Garny '' Date: Tue May 23 14:52:10 2017 +0200 Updated the binaries of our OpenSSL and zlib packages. commit c56ba8067aeb72cbf88120196d3dec010e511918 Author: Alan Garny '' Date: Tue May 23 14:50:56 2017 +0200 Some minor cleaning up. commit b3726f375d505bfde40002a81cc73e3dfeddc89c Author: Alan Garny '' Date: Tue May 23 14:08:20 2017 +0200 Some minor cleaning up. commit 254e588d4e2017c37b9bd7217083d8555e8b5267 Author: Alan Garny '' Date: Tue May 23 13:59:22 2017 +0200 libSEDML package: we need the libSBML package to be built first '(#1306).' commit 175c450c14ef494da0d53fafa4c8b95659f0c28c Author: Alan Garny '' Date: Tue May 23 13:46:11 2017 +0200 Updated our Linux and macOS packages '(#1306).' To take advantage of them being stripped '(on' 'Linux)' and to account for the renaming of SBMLAPI to libSBML and SEDMLAPI to libSEDML. commit 25cebba63ea5de849ba54e7e27629672b2fc9ac5 Author: David Brooks '' Date: Tue May 23 21:33:53 2017 +1200 Work on an interface for wrapping classes to use with Python '(#1275).' commit 416cb78a71eec353fd8843b36c924334a56a2601 Author: Alan Garny '' Date: Tue May 23 11:10:01 2017 +0200 Mesa package: make sure that our library gets copied when it has actually been built '(#1306).' commit dbb3f92de5cd5525aefee848cc887af3f34051f6 Author: Alan Garny '' Date: Tue May 23 11:02:42 2017 +0200 Some minor cleaning up. commit 3d8f3271bd012b4303923dea19ab2f913436e64e Author: Alan Garny '' Date: Tue May 23 09:45:11 2017 +0200 Changed the name of our libSBML and libSEDML packages '(#1306).' commit 0e000afc099d7b271d82d63c9b2ddf640c1cb54d Author: Alan Garny '' Date: Tue May 23 09:40:02 2017 +0200 Rebuilt our packages on macOS '(#1306).' $'\342\200\246' and thus taking advantage of the stripping of our binaries. At least, for some packages. commit 280cc5251cc707ace0d984f6730b645eb21197e5 Author: Alan Garny '' Date: Tue May 23 08:56:04 2017 +0200 Getting ready to rebuild our packages on Linux and macOS '(#1306).' commit 6aadded69667d0c1194c29f889fade459b7b669b Author: Alan Garny '' Date: Mon May 22 20:21:54 2017 +0200 More generic .gitignore file. commit 28919fbcef61dc16295d3642bbb20014158c96e4 Author: Alan Garny '' Date: Mon May 22 20:07:49 2017 +0200 Moved our Mesa package folder '(#1306).' This was causing a problem to have it under '`[OpenCOR]/distrib/linux/mesa`' since our 'RETRIEVE_PACKAGE_FILE()' macro replace '`linux`' with '`ext`…' commit 2682d2f31555f6c8c16f259753c245f185bec87a Author: Alan Garny '' Date: Mon May 22 19:47:19 2017 +0200 Some minor cleaning up. commit 42222bd6293549015ab22a95cfb7bf5e880a5d01 Author: Alan Garny '' Date: Mon May 22 19:36:12 2017 +0200 Some minor cleaning up. commit dd8ae7229f3ca4a36c0e7d069984041a7d719461 Author: Alan Garny '' Date: Mon May 22 19:35:49 2017 +0200 Mesa package: generate the binary on Linux '(#1306).' commit 98d81b7dfd32fc62ea5b2e8053ccb832e1449fd9 Author: Alan Garny '' Date: Mon May 22 19:29:28 2017 +0200 Packages: make sure that files get stripped, if needed '(#1306).' commit cdc2ce52c850a7bb3b3432189eabfac189fb5f19 Author: Alan Garny '' Date: Mon May 22 19:11:32 2017 +0200 Update our main .gitignore file. commit feb6b704fb88caf2a83a8df5457198a0a329e041 Author: Alan Garny '' Date: Mon May 22 18:40:26 2017 +0200 Mesa package: can now generate the package on Linux '(#1306).' commit bdaa97657dadee65584544c1b08ae1c8352d790d Author: Alan Garny '' Date: Mon May 22 16:40:08 2017 +0200 Some minor cleaning up. commit 8dddee1b1190fd4749b7338b664ec01072a191c3 Author: Alan Garny '' Date: Mon May 22 16:35:34 2017 +0200 Some minor cleaning up. commit 1c24fd9ebd36f229c83642a5806f708cc16a5cd2 Author: Alan Garny '' Date: Mon May 22 16:27:59 2017 +0200 Some minor cleaning up. commit 47f6aae729d5624397a1b2a5bc4f605aef67d1d6 Author: Alan Garny '' Date: Mon May 22 16:15:52 2017 +0200 Some minor cleaning up. commit 82638723a4bc5079baa98cd40dcc4d7d974101bb Author: Alan Garny '' Date: Mon May 22 15:48:27 2017 +0200 SED-ML API package: oops, actually need to specify a specific release tag '(#1306).' commit 5b3f67564be04f20200ca218ecd6a44f1ec63b59 Author: Alan Garny '' Date: Mon May 22 15:44:23 2017 +0200 Some minor cleaning up. commit cf4580e6b612b63209e46c11e915af8ebc3de820 Author: Alan Garny '' Date: Mon May 22 15:43:55 2017 +0200 SED-ML API package: generated binaries on Windows, Linux and macOS '(#1306).' commit d1ef6bcbbb485734a4218ba9d11c721256ccbdeb Author: Alan Garny '' Date: Mon May 22 15:37:45 2017 +0200 SED-ML API package: we need to define LIBZ_LIBRARY on Windows '(#1306).' commit 6d204ed75ed8531549f41fde67654a90f394e140 Author: Alan Garny '' Date: Mon May 22 15:36:59 2017 +0200 Let people know when we are downloading the libSBML dependencies '(#1306).' commit 52d0ea30a163c434475dfb4985f5505e6026b86a Author: Alan Garny '' Date: Mon May 22 15:16:36 2017 +0200 SED-ML API package: can now build on Windows and Linux '(#1306).' commit 0ffc873f226c48859a2e6030d328f78df5db3b4c Author: Alan Garny '' Date: Mon May 22 14:51:35 2017 +0200 SBML API package: missed the fact that the name of the package repository is different from that of our plugin '(#1306).' commit d6d4ac954b4e9ae4c4442b9ea101fec9ca1b8569 Author: Alan Garny '' Date: Mon May 22 14:14:25 2017 +0200 Some minor cleaning up. commit 3e009459a21970bff57b7b323ad348f3144a9c32 Author: Alan Garny '' Date: Mon May 22 14:13:09 2017 +0200 SED-ML API package: can now build on macOS '(#1306).' commit f444c1a79fbb37aced9e1ee00a8bab4bab273c37 Author: Alan Garny '' Date: Mon May 22 14:02:15 2017 +0200 Some minor cleaning up. commit 55e886aea2dd76ca556e5bb31f5a94b01c44feac Author: Alan Garny '' Date: Mon May 22 13:53:32 2017 +0200 SED-ML package: added the USE_PREBUILT_SEDMLAPI_PACKAGE option, and removed our local copy of the SED-ML header files, as well as our SED-ML-related readme file and .gitignore file '(#1306).' commit cd3670d019a102a912aa25ceba4b107f3108d0ef Author: Alan Garny '' Date: Mon May 22 13:53:02 2017 +0200 SED-ML package: added the USE_PREBUILT_SEDMLAPI_PACKAGE option, and removed our local copy of the SED-ML header files, as well as our SED-ML-related readme file and .gitignore file '(#1306).' commit 55b137d1d91b6141af0b3f9b1dff6661b989c64b Author: Alan Garny '' Date: Mon May 22 13:48:33 2017 +0200 SBML API package: generated binaries on Windows, Linux and macOS '(#1306).' commit bdcaaf742a9167e3feede2a2ce0ba067e86b5011 Author: Alan Garny '' Date: Mon May 22 13:17:33 2017 +0200 SBML API package: can now build on Windows '(#1306).' commit 551e650ee613eb9dbf7da37ec42696f80df65764 Author: Alan Garny '' Date: Mon May 22 11:00:00 2017 +0200 Some minor cleaning up. commit 74ba2931aa80fa6fe8a4c670d8d3826fe1279a31 Author: Alan Garny '' Date: Mon May 22 10:21:59 2017 +0200 SBML API package: fixed a small problem with passing options to the CMake build '(#1306).' This meant that our tests $'couldn\342\200\231t' be compiled since they expected the SBML API to be built with the C++ namepsace on. commit 8a0a0a2072f9dcc1c101d21d4dd99329bf5a10de Author: Alan Garny '' Date: Mon May 22 10:17:41 2017 +0200 SBML API package: make sure that our tests get build only when our SBML API binary has been built '(#1306).' Side note: the package now builds fine on Linux. commit 0104fefc6686a3685f9736e8ace66e2db883700e Author: Alan Garny '' Date: Mon May 22 10:07:08 2017 +0200 SBML API package: 'don'\''t' need the .gitignore file anymore '(#1306).' commit 6a60b0c6d3735a804ad135099de449ec73385f2f Author: Alan Garny '' Date: Mon May 22 10:04:09 2017 +0200 SBML API package: can now build on macOS '(#1306).' commit 4fd7538c39a80f145184b936d22ded4a70dad022 Author: Alan Garny '' Date: Mon May 22 09:44:54 2017 +0200 SBML API package: get ready to build libSBML '(#1306).' commit 582e0e34533a5a3d20d89943a50b07d1f3436415 Author: Alan Garny '' Date: Mon May 22 09:43:39 2017 +0200 CellML API package: put back the tests '(got' deleted by 'mistake)' '(#1306).' commit 50311b7168062b052a2775abefb4093281c7fda8 Author: Alan Garny '' Date: Mon May 22 09:42:46 2017 +0200 SBML API package: initial CMake file. commit 3a688b6b70c10814f63b5503d277a3eefc7c2d4a Author: Alan Garny '' Date: Mon May 22 09:13:18 2017 +0200 SBML package: added the USE_PREBUILT_SBMLAPI_PACKAGE option, and removed our local copy of the SBML header files, as well as our SBML-related readme file '(#1306).' commit 75570dd817490af131fc2d87032c4bc850229b57 Author: Alan Garny '' Date: Fri May 19 20:23:17 2017 +0200 Qwt package: generated binaries '(#1306).' commit 69fd8d7ccf2025db256c0bcf32e482dd54cb200b Author: Alan Garny '' Date: Fri May 19 19:52:32 2017 +0200 Revert '"Make' sure that nmake is indeed quiet '(#1306)."' This reverts commit 4e45906a6f80abd42b5b0b969a489536eba626b7. commit 4e45906a6f80abd42b5b0b969a489536eba626b7 Author: Alan Garny '' Date: Fri May 19 19:46:24 2017 +0200 Make sure that nmake is indeed quiet '(#1306).' commit c26e78834ea1c76bbd563869c75f1caa8c29d8d3 Author: Alan Garny '' Date: Fri May 19 18:45:30 2017 +0200 Qwt package: make it possible to build both the release and debug versions on Windows '(#1306).' commit 27fbe4e03c7a951bea850309f0e6d46c991b691a Author: Alan Garny '' Date: Fri May 19 18:44:05 2017 +0200 Qwt package: make sure that the QwtMathML library can find the Qwt library '(#1306).' commit 75b999f6914357b7e1afe105d143073444e0d111 Author: Alan Garny '' Date: Fri May 19 18:09:04 2017 +0200 Qwt package: some minor cleaning up '(#1306).' commit 2091cd693af1717661cef48d69fadb14ba83daab Author: Alan Garny '' Date: Fri May 19 17:16:07 2017 +0200 Qwt package: can now build on macOS '(#1306).' commit 4dddcb61bdbccb47e4e957721cac3159ffb8b2d7 Author: Alan Garny '' Date: Fri May 19 16:04:16 2017 +0200 Qwt package: deleted two files too many '(#1306).' commit e018b2c226b35174be3c9d556d55d76691156260 Author: Alan Garny '' Date: Fri May 19 15:46:59 2017 +0200 QScintilla package: generated new binaries '(#1306).' commit 6c74fe6965c5b26a11190c498011ae421d952e17 Author: Alan Garny '' Date: Fri May 19 14:15:47 2017 +0200 QScintilla package: build the package out of source and make sure that we dereference the symbolic link to the library on Linux and macOS '(#1306).' commit 2187ccc04f3d23bf6dee5283044f86b7a2be6b2e Author: Alan Garny '' Date: Fri May 19 11:48:50 2017 +0200 QScintilla package: fixed a typo issue '(#1306).' commit 647e492656d307e623be61f7434bc082ec230bb5 Author: Alan Garny '' Date: Fri May 19 11:41:26 2017 +0200 Slight update to our third-party libraries page '(#1306).' commit fc11ba50d012589ad619cd994a0a7891c0f18f12 Author: Alan Garny '' Date: Fri May 19 11:20:46 2017 +0200 Qwt package: removed our local copy '(#1306).' commit cf2fd616c7619bcdfa26c67213523abd99a726ac Author: Alan Garny '' Date: Fri May 19 10:58:12 2017 +0200 Qwt package: replaced '`USE_PREBUILT_QWT_PLUGIN`' with '`USE_PREBUILT_QWT_PACKAGE`' '(#1306).' commit 7ece62e6d7351110b11988a8d5d89eaa6d3bf2ab Author: Alan Garny '' Date: Fri May 19 10:57:39 2017 +0200 Some minor cleaning up. commit ecb352fa15f5742e523d3d14e274b51d6671e979 Merge: 99f2fea39 d0c43228f Author: Alan Garny '' Date: Fri May 19 10:41:15 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit d0c43228f95f72f4961c5a71655a7439221c848f Author: Alan Garny '' Date: Fri May 19 10:39:52 2017 +0200 Some minor cleaning up '[ci' 'skip].' commit 82f608daa546c6523f6579d7619db7192a7dcac0 Author: David Brooks '' Date: Fri May 19 20:37:32 2017 +1200 Fix typo '(#1310).' commit ba0fe143c6ef1896082c65187e2bff75083c9c8b Author: David Brooks '' Date: Fri May 19 20:35:30 2017 +1200 PythonQt repository is now '`pythonqt`' '(#1306).' commit 703e8e57db683cdab27e98c9bda472aca0bf56f3 Author: David Brooks '' Date: Fri May 19 20:34:19 2017 +1200 Use '`opencor/python`' for prebuilt packages and wheels '(#1310).' commit 925e609e633fb6ba79f9707c2c9ef8d2ca4328d6 Author: Alan Garny '' Date: Fri May 19 10:32:56 2017 +0200 Slight update to our downloads page '(#1314).' commit aee0ca31019a37bc36df5877079b3e63ba01fc2e Merge: d2d30adba 482e89e58 Author: Alan Garny '' Date: Fri May 19 10:29:43 2017 +0200 OpenSSL package: updated its binaries and CMake code '(closes' '#1314).' commit 482e89e58bed7847399e91dfa4fb0c372e82e301 Author: Alan Garny '' Date: Fri May 19 09:57:08 2017 +0200 zlib package: some minor cleaning up. commit afc70bdae4b8d5c7fb5f4f152edf62c41b61ba1c Author: Alan Garny '' Date: Fri May 19 09:53:43 2017 +0200 OpenSSL package: updated its binaries and CMake code '(#1314).' commit 3dd445215c6ca937def605cc95c814e0cec3b361 Author: Alan Garny '' Date: Fri May 19 09:53:18 2017 +0200 Revert the change to our main CMakeLists.txt file '(see' commit 'a301cba).' commit a301cbaf7f13ed52ead5e1a6394dc0013e41be83 Author: Alan Garny '' Date: Fri May 19 09:51:50 2017 +0200 OpenSSL package: updated its binaries and CMake code '(#1314).' commit b9c0fa85f880b6d372f30ac123135d225c056d82 Author: Alan Garny '' Date: Fri May 19 09:50:43 2017 +0200 Some minor cleaning up. commit a8d3b0723cab2058844d64890a57d250282c4b1d Author: Alan Garny '' Date: Fri May 19 09:50:26 2017 +0200 OpenSSL package: updated our third-party libraries page '(#1314).' commit 9f029ba93598068a5ec6a43c4a35c291ede3fcba Author: Alan Garny '' Date: Fri May 19 09:49:44 2017 +0200 Added a reference to '`ccache`' in our prerequisites page. commit e890a9b3a7f5d99f3a3743229aa761bcabe4406f Author: Alan Garny '' Date: Fri May 19 09:30:20 2017 +0200 Some minor cleaning up. commit 2eac0d594ff38ef706c1ef939585044eea40f7f2 Author: David Brooks '' Date: Fri May 19 12:39:19 2017 +1200 Use '`PACKAGE_NAME`' in build scripts '(#1306).' commit e08835552be3ef7be1cce84310ae87e9c773ee63 Author: David Brooks '' Date: Fri May 19 12:38:33 2017 +1200 Python wrapper plugin uses Python packages plugin '(#1310).' commit ee39259d09bf903e072fd22cde09c711cf8ff92e Author: David Brooks '' Date: Fri May 19 12:16:55 2017 +1200 Rename '`PythonLibrary`' plugin back to '`Python`' '(#1310).' commit ac006f4a978724685d6c68eb6bbad436e219eb6e Author: David Brooks '' Date: Fri May 19 11:39:37 2017 +1200 Correctly reference 'PythonQt'\''s' include files '(#1310).' commit ad9eaf474cd21bdb8fb955b50e079cb8c83a75c0 Author: David Brooks '' Date: Fri May 19 10:59:23 2017 +1200 Specify PACKAGE_REPOSITORY and RELEASE_TAG for PythonQtAPI '(#1306).' commit 821b60344375e754143ec3ba139950cdea3dae44 Author: David Brooks '' Date: Fri May 19 10:53:02 2017 +1200 'RETRIEVE_PACKAGE_FILE():' optionally allow a 'package'\''s' release tag and/or repository to be specified '(#1306).' commit c8c82c625bd94f34c9ce5b49f22e8aea5d9bb53b Author: David Brooks '' Date: Fri May 19 10:40:14 2017 +1200 Use 'PythonQt'\''s' '`qmake`' based build '(#1310).' commit b06422b4f8dc48450a63739e91854fdf7e7decc7 Author: David Brooks '' Date: Fri May 19 09:03:39 2017 +1200 Update PythonQtAPI build script for new packaging mechanism '(#1106).' commit 99f2fea39fd494d384f7e33f10636a85d8de37b5 Author: Alan Garny '' Date: Thu May 18 19:12:16 2017 +0200 Some minor cleaning up. commit 1873ac96ce6ee69f5c93c0f660bc4110d10a33b6 Author: Alan Garny '' Date: Thu May 18 19:11:57 2017 +0200 OpenSSL package: generated new binaries '(#1306).' commit 0fdd48e2c70166ab6ce09f9d7b34e1024f507d74 Author: Alan Garny '' Date: Thu May 18 18:42:31 2017 +0200 OpenSSL package: make sure that we can build both a release and a debug version on Windows '(#1306).' commit 7034d0dcac070b6d26d679d08dc2978578b28d97 Author: Alan Garny '' Date: Thu May 18 17:49:14 2017 +0200 QScintilla package: generated binaries '(#1306).' commit bb9fd6d17365fec5de9c139cb9c87b66b257ea38 Author: Alan Garny '' Date: Thu May 18 17:36:49 2017 +0200 OpenSSL package: use the correct release tag '(#1306).' commit 831e3dff4ff8ad47e1a05772571b38078c818558 Author: Alan Garny '' Date: Thu May 18 17:36:02 2017 +0200 QScintilla package: make sure that we can generate both a release and a debug version on Windows '(#1306).' commit 619108969a61151fd08bb2b269f36845d4222289 Author: Alan Garny '' Date: Thu May 18 15:43:25 2017 +0200 Some minor cleaning up. commit 272eada6bd1bcfb7c62cb4ce91f3c44f7c587bf8 Author: Alan Garny '' Date: Thu May 18 15:43:08 2017 +0200 QScintilla package: generated binaries '(#1306).' commit c7ad9f81dcedb4f1a6a5abd22d2e11d9d03b84be Author: Alan Garny '' Date: Thu May 18 15:21:56 2017 +0200 QScintilla package: can now build it on Windows '(#1306).' commit 0f7159c628c1d69a8c00a52d5b0ed12794ddf883 Author: Alan Garny '' Date: Thu May 18 14:21:50 2017 +0200 QScintilla package: can now build it on macOS '(#1306).' commit 34fd9bb736ca5a9779288ca23d8c02109beb6b32 Author: David Brooks '' Date: Thu May 18 22:12:34 2017 +1200 Changed our license to GPL v3.0 '(#1301).' commit ee1cd24f37d2e73a2eb50ae6a401bcca4d364fa5 Author: David Brooks '' Date: Thu May 18 22:03:28 2017 +1200 Update patch utility for Python 3 when debugging. commit ad096d0570d44d7455f29cea547deb2968eaa464 Author: Alan Garny '' Date: Thu May 18 10:44:07 2017 +0200 Slight update to our third-party libraries page '(#1306).' commit ccd163f48ba6a694d4d54e9097ac8a6515625126 Author: Alan Garny '' Date: Thu May 18 09:08:17 2017 +0200 QScintilla package: removed our local copy of QScintilla '(#1306).' commit 44f9ed0b451fcf1f99f69dab1791999ba2c3898d Author: Alan Garny '' Date: Thu May 18 09:04:07 2017 +0200 Replaced '`USE_PREBUILT_QSCINTILLA_PLUGIN`' with '`USE_PREBUILT_QSCINTILLA_PACKAGE`' '(#1306).' commit ff1afc811ff5659991dce4c076b3cd7979de04a2 Author: Alan Garny '' Date: Thu May 18 09:03:18 2017 +0200 Some minor cleaning up. commit ef8ca51a477b17d31746c7ccc38d5e91da47ceec Author: David Brooks '' Date: Thu May 18 15:04:51 2017 +1200 Make sure Python executable can find libraries under OS/X '(#1310).' commit 9e35c970e9f388f8f7698cd3d25fd9d912ec8c68 Author: David Brooks '' Date: Thu May 18 15:03:27 2017 +1200 Tidy up code '(#1310).' commit d2637897660fb6cb6bde433c4046dac4f8b29692 Author: David Brooks '' Date: Thu May 18 15:02:03 2017 +1200 Work on packaging of Python site packages '(#1310).' commit c7b8cd9c981dc929dfc2ed6ba4b4001d3ba2283f Author: David Brooks '' Date: Thu May 18 14:49:07 2017 +1200 Revert commit dfbc536 as we use the SHA1_FILES to determine if a package needs downloading '(#1310).' commit a9d1292ba0ef7e25682124980dfd97ada587eb28 Author: Alan Garny '' Date: Wed May 17 18:46:15 2017 +0200 libgit2 package: ok, not quite sure what is going on here, but kind of reverting commit f908aca '(#1306).' commit e1c2adfc830848d157b28fecf87d67de1751efb9 Author: Alan Garny '' Date: Wed May 17 17:53:00 2017 +0200 Some minor cleaning up '(#1306).' commit 172198fea5fd4cd10ac3d8e8aaecfddb03473543 Author: Alan Garny '' Date: Wed May 17 17:32:18 2017 +0200 'RETRIEVE_PACKAGE_FILE():' allow to specify the repository of a package '(#1306).' commit 745a773450a297419a7cd75335f89b7e2fe71ad6 Author: Alan Garny '' Date: Wed May 17 16:50:58 2017 +0200 Some minor cleaning up. commit 6d1a42ae776e7af377bf500a5cc52b5d3364b110 Author: Alan Garny '' Date: Wed May 17 16:37:25 2017 +0200 CellML API package: now have binaries for Windows, Linux and macOS '(#1306).' commit 70928654a2f148698dd98b1d26cb6cdc20f9badb Author: Alan Garny '' Date: Wed May 17 16:21:08 2017 +0200 Make sure that 'CREATE_PACKAGE_FILE()' generates the proper call to 'RETRIEVE_PACKAGE_FILE()' '(#1306).' commit edc90b3f1c28cb3b966f8a06a4ec547b7a193e5b Author: Alan Garny '' Date: Wed May 17 16:02:46 2017 +0200 Some minor cleaning up. commit ee6e721861cafbecbc8fbb56b11a633bd4cbafbd Author: Alan Garny '' Date: Wed May 17 15:50:05 2017 +0200 CellML API package: can now build it on Windows '(#1306).' commit 6e82f3f2dbb33a01626db77fc19b60c8e96d44a8 Author: Alan Garny '' Date: Wed May 17 14:35:43 2017 +0200 Some minor cleaning up. commit a6ec6ede1ea23f4d272d9a20dbe3072235f46732 Author: Alan Garny '' Date: Wed May 17 14:24:24 2017 +0200 CellML API package: can now build it on Linux '(#1306).' commit ce7be20a3a2da1f4ee5302cf54fa03ff4957e83e Author: Alan Garny '' Date: Wed May 17 14:15:54 2017 +0200 CellML API package: can now build it on Linux '(#1306).' commit cdb989b97f47a81ad0e038a66a02ea81ab51ffc7 Author: Alan Garny '' Date: Wed May 17 14:06:43 2017 +0200 CellML API package: can now build it on Linux '(#1306).' commit 57cfba5f0f96779250b1564a3014bf3f0a23354b Author: Alan Garny '' Date: Wed May 17 13:26:46 2017 +0200 CellML API package: can now build it on macOS '(#1306).' commit ad467c5e8456147544ae1cd4d4c39df2b722748b Author: Alan Garny '' Date: Wed May 17 10:24:06 2017 +0200 Some minor cleaning up. commit 026841aa5999a3f381ddabcabc1cd102febd0fae Author: Alan Garny '' Date: Wed May 17 10:20:02 2017 +0200 Some minor cleaning up. commit d81d19bb65c78a0d3ffbf7722e17612c33076d2a Author: Alan Garny '' Date: Wed May 17 09:24:09 2017 +0200 Removed our CellML API README.rst file '(#1306).' commit 3743100c05629e8eaea1525bdea5e0711c48a0ee Author: Alan Garny '' Date: Wed May 17 09:23:48 2017 +0200 Slight update to our third-party libraries page '(#1306).' commit 57790da21ebaedde6c4aa7fa7b2936ca6d4f2635 Author: Alan Garny '' Date: Wed May 17 09:23:09 2017 +0200 Removed our copy of '(some' 'of)' the CellML API files '(#1306).' commit ce910ef6cfe1ba43af12296b246b0e5474d60cd7 Author: Alan Garny '' Date: Wed May 17 09:22:04 2017 +0200 Some minor cleaning up. commit fb6b4ccb45961d00fba64708e982c848df20d0ea Author: Alan Garny '' Date: Wed May 17 09:19:26 2017 +0200 'RETRIEVE_PACKAGE_FILE():' allow to pass a release tag as an option '(#1306).' commit f908aca4063e8da1a47fb9ce07e71964c7cab106 Author: Alan Garny '' Date: Tue May 16 19:06:29 2017 +0200 libgit2 package: rely on the major version in the end '(!?)' '(#1306).' Not quite sure what happened here, but I am 99.9% certain that there used to be a time when the minor version rather than the major one was 'needed!?' commit 234bc2e99189a7d536f215cd22733e733f6a7ab1 Author: Alan Garny '' Date: Tue May 16 18:40:21 2017 +0200 Some minor cleaning up. commit 3ada280768bce1ea0201f02f13a01727cb55992b Author: Alan Garny '' Date: Tue May 16 18:39:58 2017 +0200 SUNDIALS package: generated binaries on Windows, Linux and macOS '(#1306).' commit 47d829194d0854dc9ed932a0702664b8c77a6e0f Author: Alan Garny '' Date: Tue May 16 18:32:28 2017 +0200 SUNDIALS package: make sure that we can build on Windows '(#1306).' commit 420e4391ea20ac8fd65760c7a860fe5fb0fc5e3a Author: Alan Garny '' Date: Tue May 16 17:55:15 2017 +0200 Some minor cleaning up. commit e1f95e0b0d6535f6bf81eb5f3ccb79c9adfe58ba Author: Alan Garny '' Date: Tue May 16 17:48:31 2017 +0200 Some minor cleaning up. commit e148e6eb5183e65d12c5d78dacac212667139ed3 Author: Alan Garny '' Date: Tue May 16 17:25:16 2017 +0200 Some minor cleaning up. commit d46636b845fb5ddbb5c765c8fbad01630ebca64e Author: Alan Garny '' Date: Tue May 16 17:04:42 2017 +0200 SUNDIALS package: prevent a CMake warning '(#1306).' commit ce0ca7451e0b78c62e5409f2199f3b02e9ab20ee Author: Alan Garny '' Date: Tue May 16 16:51:41 2017 +0200 Some minor cleaning up. commit 9f1bdc78c1329e1eccbde26f1938620b3c8b8aa2 Author: Alan Garny '' Date: Tue May 16 14:23:07 2017 +0200 SUNDIALS package: make sure that it can be found '(#1306).' commit 2bd4be8cfa490b89de6a39788a660dbadf1415df Author: Alan Garny '' Date: Tue May 16 14:20:18 2017 +0200 SUNDIALS package: can now build it on macOS '(#1306).' commit 80d0ef92f1896a58a2edd1fa28b1c289a1e0e6ef Author: Alan Garny '' Date: Tue May 16 11:24:34 2017 +0200 Slight update to our third-party libraries page '(#1306).' commit 54e9e8fa8d3b1b27691db10448b496c535ef079f Author: Alan Garny '' Date: Tue May 16 10:24:40 2017 +0200 Removed ''\''our'\''' copy of SUNDIALS '(#1306).' commit a042d9f53fb8d0443882767591f427f29dfd8d2c Author: Alan Garny '' Date: Tue May 16 10:24:14 2017 +0200 Renamed '`USE_PREBUILT_SUNDIALS_PLUGIN`' to '`USE_PREBUILT_SUNDIALS_PACKAGE`' '(#1306).' commit 3a7fd9c78a429521ca74e68d1f9978e8e61a7b79 Author: David Brooks '' Date: Tue May 16 15:18:44 2017 +1200 Bundle our Python packages in their own plugin '(#1310).' commit dfbc536061c5f027a889aeea77499d6ddeca8dc0 Author: David Brooks '' Date: Tue May 16 15:16:27 2017 +1200 Python package distributions 'don'\''t' always have binary files that require SHA1 checking, so remove requirement to have at least one file '(#1310).' commit 6256a0aa1eacc85d00c5cd4ae4764da12ef1fced Author: David Brooks '' Date: Tue May 16 14:36:34 2017 +1200 Export Python version and site packages 'directory;' tidy up CMake code '(#1310).' commit 87749fae903d4dfc205d81f6b8154153d28d665d Author: David Brooks '' Date: Tue May 16 14:35:09 2017 +1200 Pass full path as destination directory of an external package '(#1106).' commit 1365c1c54e8e58d0f18c9287f8052f66b4a09650 Author: David Brooks '' Date: Tue May 16 14:31:08 2017 +1200 Changed our license to GPL v3.0 '(#1301).' commit 849924a02cdb279e2df9ad85aba9c400c070cb41 Author: Alan Garny '' Date: Mon May 15 17:46:47 2017 +0200 OAuth plugin: make sure that we distinguish between package and plugin names '(#1306).' commit 0680215fee8f10265920a6bff9d7bec703207883 Author: Alan Garny '' Date: Mon May 15 17:37:14 2017 +0200 Some minor cleaning up. commit b0e48ed4373c16693a1267602937a549aa7c68e3 Author: Alan Garny '' Date: Mon May 15 17:36:32 2017 +0200 OAuth package: binaries for Windows, Linux and macOS '(#1306).' commit 837e2830054b88df013976bdbac5d9cc1aade15f Author: Alan Garny '' Date: Mon May 15 17:30:51 2017 +0200 OAuth package: the name of the package in GitHub is actually o2 and not OAuth '(#1306).' commit 4555952338a84d7f800530ef2516d68a599e5eaa Author: Alan Garny '' Date: Mon May 15 17:23:22 2017 +0200 Some minor cleaning up. commit 649f7f4a7efebbb78c542e465cdff8251ad117a4 Author: Alan Garny '' Date: Mon May 15 17:22:28 2017 +0200 OAuth package: binaries for Windows, Linux and macOS '(#1306).' commit bad2015b5054d3aa51e4226d4bdad08c07fdca73 Author: Alan Garny '' Date: Mon May 15 17:18:07 2017 +0200 OAuth package: fixed a versioning issue on Linux and macOS '(#1306).' commit 9a5feb723a572b38488b7bdc3f720a2a67395d4f Author: Alan Garny '' Date: Mon May 15 17:03:45 2017 +0200 OAuth package: fixed a versioning issue on Linux and macOS '(#1306).' commit 94536e1d370e8e31396ced05da6dbdccc24ad2ad Author: Alan Garny '' Date: Mon May 15 16:46:17 2017 +0200 Some minor cleaning up. commit f3a21c2e8db538f26e66396800a7431952fa3ce7 Author: Alan Garny '' Date: Mon May 15 16:44:45 2017 +0200 OAuth package: binaries for Windows, Linux and macOS '(#1306).' commit 7d1b498cf889938498628b32f8f1f65e627174ad Author: Alan Garny '' Date: Mon May 15 16:43:24 2017 +0200 OAuth package: address some more warnings on Windows '(#1306).' commit c3617f5e43c9fe92b3e4a90b553ec1ac0070d48a Author: Alan Garny '' Date: Mon May 15 16:23:11 2017 +0200 Get ready to build the OAuth package. commit b525dcef8496653167b29ddd1cfe27598fbcc757 Author: Alan Garny '' Date: Mon May 15 16:21:55 2017 +0200 OAuth package: build it with o2_WITH_OAUTH1 enabled '(#1306).' commit 3a0fd53e4109cca5179137c248898a29c5023868 Author: Alan Garny '' Date: Mon May 15 15:45:27 2017 +0200 Some minor cleaning up. commit d56174e5aae32fe70981d90a91222f6ef151df89 Author: Alan Garny '' Date: Mon May 15 15:44:32 2017 +0200 OAuth package: build the Windows, Linux and macOS binaries '(#1306).' commit 97e8ee097d82b051e000b7256f3dbe01977bedd6 Author: Alan Garny '' Date: Mon May 15 15:39:53 2017 +0200 OAuth package: make sure we 'don'\''t' get any warnings on Windows '(#1306).' commit 986873408b28da4c2b1749eef6e21e94e792d362 Author: Alan Garny '' Date: Mon May 15 14:50:04 2017 +0200 Some work on building the OAuth package '(#1306).' commit 88487303dca3221ca8c5706384212a6452507fa2 Author: Alan Garny '' Date: Mon May 15 11:06:21 2017 +0200 Some minor cleaning up. commit 56c2f3291279395dc275a9465c623707b0ab6af4 Author: Alan Garny '' Date: Sun May 14 18:49:36 2017 +0200 libgit2 relies on the minor version for the name of its main shared library '(#1306).' commit ee801757fad6ce172951717173b574d2dabf46eb Author: Alan Garny '' Date: Fri May 12 16:00:38 2017 +0200 Some minor cleaning up. commit dba2a78d9fca67bf7725d51dc241d06bd1e2d5ae Author: Alan Garny '' Date: Fri May 12 15:38:28 2017 +0200 Some minor cleaning up. commit fe2617062412ab762bc88c3f5246d1899df5f1ab Author: Alan Garny '' Date: Fri May 12 15:33:24 2017 +0200 Slight update to our prerequisites page. commit c1aad7b1241a6d9c1f261f0c1dab7d23069edbd6 Author: Alan Garny '' Date: Fri May 12 15:13:59 2017 +0200 Some minor cleaning up. commit c5b50e5c235ff79336db6519105e3b4e6a11d91f Author: Alan Garny '' Date: Fri May 12 15:12:56 2017 +0200 Generated our various LibXDiff binaries '(#1306).' commit 49b96cea72a1cafabc20a0a65075ced519e80fb3 Author: Alan Garny '' Date: Fri May 12 15:12:47 2017 +0200 LibXDiff: prevent warnings when building a debug version on Windows '(#1306).' commit f827b7b067adf88b29fdeb16b9057d8726aa8cad Author: Alan Garny '' Date: Fri May 12 15:02:54 2017 +0200 Slight update to our 'CREATE_PACKAGE_FILE()' CMake macro '(#1306).' commit a18c9c5ada0da9a4449e5955874c8d4d9665e561 Author: Alan Garny '' Date: Fri May 12 14:50:44 2017 +0200 Make sure that LibXDiff builds fine on Windows '(#1306).' commit f7886d5b9794382b106665cad28c7cd10acdf8d2 Author: Alan Garny '' Date: Fri May 12 14:43:52 2017 +0200 Some minor cleaning up. Also make sure that we use the right version information for LibXDiff '(#1306).' commit 53aca3942355dc522992030e4094c502ec73ac70 Author: Alan Garny '' Date: Fri May 12 13:24:22 2017 +0200 Some work on building LibXDiff using 'ExternalProject_Add()' '(#1306).' commit 10488a9a42a700364eee2976f90ac36136d260ad Author: Alan Garny '' Date: Fri May 12 13:23:18 2017 +0200 Some minor cleaning up. commit d11da137ff2ba8619e957c7d16ea27f7889153fd Author: Alan Garny '' Date: Fri May 12 09:44:21 2017 +0200 Some minor cleaning up. commit 91147fccca0f39596cc7798a2e94cbce4ba86a2b Author: David Brooks '' Date: Fri May 12 19:01:01 2017 +1200 Fix bad merge into branch '(#1306).' commit 962106d00c8ff806510dbda9dc3ba67128607af8 Author: David Brooks '' Date: Fri May 12 17:40:39 2017 +1200 Rename '`Python`' plugin to '`PythonLibrary`' '(#1310).' commit 8d9618f92d7aa324f15b2bd294e338b0a2b904c7 Author: David Brooks '' Date: Fri May 12 10:42:21 2017 +1200 Update Python build script for new packaging mechanism '(#1106).' commit c1ef0cc540cd8e2462e4fad0933ce5db0c16f011 Author: Alan Garny '' Date: Thu May 11 14:59:07 2017 +0200 Some minor cleaning up. commit 5ef326e340fdf2e15a402ec9529b41c23ed87acd Author: Alan Garny '' Date: Thu May 11 11:51:49 2017 +0200 Some minor cleaning up. commit b7f35c6eb9854c5b42a064c59aa25105315fbec4 Author: Alan Garny '' Date: Thu May 11 11:32:05 2017 +0200 Removed our copy of LibXDiff '(#1306).' commit 5183d267e1d7cbdca0b795f7a1cb69023d043823 Author: Alan Garny '' Date: Thu May 11 11:03:43 2017 +0200 Renamed USE_PREBUILT_LIBXDIFF_PLUGIN with USE_PREBUILT_LIBXDIFF_PACKAGE '(#1306).' commit ca5982fa8bfb7f0cf31e8ac20f1915a9a1d58804 Author: Alan Garny '' Date: Thu May 11 10:57:56 2017 +0200 Generated libgit2 binaries for Windows, Linux and macOS '(#1306).' commit 4351a792be711c4f50426c6f5d206022ab25fb18 Author: Alan Garny '' Date: Thu May 11 09:18:51 2017 +0200 Various cleaning up following the merging of issue '#1101' '(#1306).' commit 3ee859b5c3128aaf4b20bcc8c8da7bc205fe405c Merge: b582fc8b3 d2d30adba Author: Alan Garny '' Date: Thu May 11 08:52:48 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 2dedd66b30b3f35460a30df05af740c1fc0984c8 Merge: b86a2adef d2d30adba Author: David Brooks '' Date: Thu May 11 09:52:51 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit d2d30adbac6cac69cfe230fab883862ab9091516 Merge: 5737e132e 403a7b27d Author: Alan Garny '' Date: Wed May 10 20:07:50 2017 +0200 Added OpenSSL as a third-party plugin '(closes' '#1101).' commit 403a7b27dd931480fca976db065a15bb738e281a Author: Alan Garny '' Date: Wed May 10 18:57:11 2017 +0200 Slight update to our downloads page '(#1101).' commit 5f9e158b0a77bdaa51c19a4d36462d5207c0d278 Author: Alan Garny '' Date: Wed May 10 18:40:46 2017 +0200 Argh, we actually need to make the OpenSSL libraries writable on Linux too '(#1101).' commit 9d1832b5d0da7b835e0d3d8faec751de901e4526 Author: Alan Garny '' Date: Wed May 10 18:14:59 2017 +0200 Some minor cleaning up. commit 4d8885b8515fcba5afa4f52dff188813dd4fee31 Author: Alan Garny '' Date: Wed May 10 17:57:19 2017 +0200 Some minor cleaning up. commit 194c6d4380544c4e90868f88e95bd0f936f20a1c Author: Alan Garny '' Date: Wed May 10 17:07:10 2017 +0200 Some minor cleaning up '(#1101).' commit c86cb8ecebbb1abc98d1d8dcc2261e9397fe1196 Author: Alan Garny '' Date: Wed May 10 16:57:25 2017 +0200 Fixed a small problem with the report on how to call 'RETRIEVE_PACKAGE_FILE()' '(#1101).' commit 5831a79e8174b5d717cfe97cc90b7799a4de830c Author: Alan Garny '' Date: Wed May 10 16:30:31 2017 +0200 Argh, we actually need to make the OpenSSL libraries writable on Linux too '(#1101).' commit b0a6701cd047281a63261291baca3067ddebbbf5 Author: Alan Garny '' Date: Wed May 10 16:16:03 2017 +0200 Some minor cleaning up '(#1101).' commit 54348e1890ca86e38aadfde5731a0c5082ae14b2 Author: Alan Garny '' Date: Wed May 10 14:22:45 2017 +0200 Removed the manual installation of OpenSSL on Windows and Linux '(#1101).' commit a14abc89c0bf279e9e281c5ab2828e4c54c73fa2 Author: Alan Garny '' Date: Wed May 10 14:08:22 2017 +0200 Some minor cleaning up. commit 23cc6a94ef6d4c77f0c19397cfb8245c450c37d4 Author: Alan Garny '' Date: Wed May 10 14:04:19 2017 +0200 Only let OpenCOR know about the options '(with' which it was 'built)' that it needs. commit e3135d17f33b1da70d07dcd72203b0a887fca8e9 Author: Alan Garny '' Date: Wed May 10 13:53:59 2017 +0200 Replaced '`USE_PREBUILT_OPENSSL_PLUGIN`' and '`USE_PREBUILT_ZLIB_PLUGIN`' with '`USE_PREBUILT_OPENSSL_PACKAGE`' and '`USE_PREBUILT_ZLIB_PACKAGE`,' respectively '(#1101).' commit f17ccd71f08bfb3308567c3d0f66af6554b9d22f Author: David Brooks '' Date: Wed May 10 20:37:17 2017 +1200 Some minor cleaning up '(#1101).' commit 3fd15aa7f85c40b74aa85800c957a3f5187271c9 Author: David Brooks '' Date: Wed May 10 15:23:06 2017 +1200 Update SHA1 values for Windows build '(#1101).' commit e65aebaf98e1e933b1a954d2bfefa988efb7d239 Author: David Brooks '' Date: Wed May 10 14:12:12 2017 +1200 Update SHA1 values for Linux build '(#1101).' commit ee5cae590ce4a41cef0bc0658ec8cf492de6b61a Author: David Brooks '' Date: Wed May 10 13:23:02 2017 +1200 Build OpenSSL as a package '(#1101).' commit 5a108a6ef8e978c5e8d9a901e2ffd916d8a14703 Author: David Brooks '' Date: Wed May 10 13:19:30 2017 +1200 Tweaks to packaging system '(#1106).' commit b582fc8b3795a40983a29b8eca2ec2eb968480c3 Author: Alan Garny '' Date: Tue May 9 20:13:46 2017 +0200 Some minor cleaning up. commit 71737b3695f5f2b5647ba894ed91f2527e1972bb Author: Alan Garny '' Date: Tue May 9 20:10:06 2017 +0200 Some minor cleaning up '(#1306).' commit 147e9fa68a1df8fa1924954588236f89ebc0d9b2 Author: Alan Garny '' Date: Tue May 9 19:53:29 2017 +0200 Can now build libgit2 as a package on Windows '(#1306).' commit 5185adf6432ec5bdaca643ade79397d504cec3d9 Author: Alan Garny '' Date: Tue May 9 17:41:14 2017 +0200 libgit2: use the maint/v0.25 rather than the v0.25.1 tag since we had to patch it '(#1306).' commit a948ed8b8159d0e3c6852a0708b9a3e797b356fd Author: Alan Garny '' Date: Tue May 9 17:40:22 2017 +0200 Some minor cleaning up. commit bb243e99f9f9b4224165f708dee7139ca26401b8 Merge: 54722fb3d 5737e132e Author: Alan Garny '' Date: Tue May 9 17:29:03 2017 +0200 Merge branch ''\''master'\''' into issue1306. commit 5737e132e3e3b1a3908566c32dc231c331db5e6a Merge: 17bb1f255 8fa1e18d6 Author: Alan Garny '' Date: Tue May 9 17:16:18 2017 +0200 General: OpenGL now works in an Ubuntu virtual machine '(closes' '#1307).' commit 8fa1e18d6a4b31a12c4ff5c83f6c5861764592e2 Author: Alan Garny '' Date: Tue May 9 16:39:47 2017 +0200 Slight updates to our downloads pages '(#1307).' commit ec21bc07022c83a782fbcfed08e5caaae6f8c778 Author: Alan Garny '' Date: Tue May 9 16:32:29 2017 +0200 General: OpenGL now works in an Ubuntu virtual machine '(#1307).' commit 54722fb3d23ac045d2e09a7f321f9508a03a4da2 Author: Alan Garny '' Date: Tue May 9 15:34:07 2017 +0200 Can now build libgit2 as a package on macOS '(#1306).' commit 167ea3d0efbba5e079d47c1dc7cb728995bb7ad9 Author: Alan Garny '' Date: Tue May 9 13:12:54 2017 +0200 Some minor cleaning up. commit c50fea3be66147983c2221c33f17a4068fd69d3c Author: Alan Garny '' Date: Mon May 8 16:49:16 2017 +0200 zlib: prevent some warnings on Windows. commit 17bb1f25584188f8ca5d839bf6b0c7f66dd396dd Merge: 82eb8c133 88470fbe6 Author: Alan Garny '' Date: Sun May 7 17:43:33 2017 +0200 New snapshot. commit 88470fbe6549246b65c606aa2ce6e81d783b84f8 Author: Alan Garny '' Date: Sun May 7 17:04:41 2017 +0200 New snapshot. commit 82eb8c133ef7c6054b85d886fde568ee93b9f87e Merge: 2e9d16668 2f80d747d Author: Alan Garny '' Date: Sun May 7 16:59:35 2017 +0200 Changed our license to GPL v3.0 '(closes' '#1301).' commit 2f80d747dd56a388bb38644a522cd646ea904e0c Author: Alan Garny '' Date: Sun May 7 16:09:53 2017 +0200 Slight update to our downloads page '(#1301).' commit b4d99563a14f79a75dd9ce4e903ad7ee34cf3d46 Author: Alan Garny '' Date: Sun May 7 16:01:47 2017 +0200 Updated our license blurb at the beginning of source files '(#1301).' commit 80e6cce0d4d853e1f5ab6424505b2ea7d545a441 Author: Alan Garny '' Date: Sun May 7 07:39:42 2017 +0200 Updated our license itself '(#1301).' commit 023a4819f30c67919cf56580b2f446c5137af178 Author: Alan Garny '' Date: Sun May 7 07:30:25 2017 +0200 Updated our third-party libraries page '(#1301).' commit 2e9d166685738c0d6e175bfc96a87501695f0614 Merge: d4e2f7a63 80fe32ceb Author: Alan Garny '' Date: Sat May 6 20:25:52 2017 +0200 Can now download an official version of OpenCOR from either the OpenCOR website or GitHub '(closes' '#1154).' commit 80fe32cebf600097561ee73e24e7bd8da40b1b3e Author: Alan Garny '' Date: Sat May 6 20:20:00 2017 +0200 Slight update to the downloads page '(#1154).' commit 0bedba9b74712b11b40eed6546f0da806bd2f7e8 Author: Alan Garny '' Date: Sat May 6 20:16:59 2017 +0200 Now show a drop-down menu whenever we click on a download link '(for' an official version of 'OpenCOR).' The drop-down menu allows to select to download OpenCOR from either ''\''here'\''' or GitHub '(#1154).' commit ec28e8b42f7a75c7b73c29c464595eb7630a5128 Author: Alan Garny '' Date: Sat May 6 20:12:20 2017 +0200 Some minor cleaning up. commit 04853cb28883b8ffebf8f4fbaf2be7f4447fe523 Author: Alan Garny '' Date: Sat May 6 19:11:21 2017 +0200 Some minor cleaning up. commit 4a71ba1903f7c02edf1dbf07f6abf784d7adfc63 Author: Alan Garny '' Date: Sat May 6 13:18:38 2017 +0200 Now provide two download sites for official versions of OpenCOR '(#1154).' commit 03829e4025288ccc1dfb5873cfe0ced88b9fc78e Author: Alan Garny '' Date: Sat May 6 13:09:07 2017 +0200 Some minor cleaning up. commit f5b5f55552f1163fc4f51a13503d435fbefbac26 Author: Alan Garny '' Date: Sat May 6 12:15:28 2017 +0200 Make sure that the contents menu reflects the fact that we have snapshots or not '(#1154).' commit b3f0f66f477dc8f84b6f746e01b8bd8fec7be0ff Author: Alan Garny '' Date: Sat May 6 12:01:54 2017 +0200 Some minor cleaning up. commit 467a725871c292fd69e13e40ac115b386f424d2c Author: Alan Garny '' Date: Sat May 6 10:04:28 2017 +0200 Mention that official versions of OpenCOR can be downloaded both from the OpenCOR website and from GitHub. Show some information about the snapshots, if any '(#1154).' commit d4e2f7a63cc3cc1b06dd8573b7485e3efa7a379a Merge: 5bd656faf c81d1b450 Author: Alan Garny '' Date: Fri May 5 20:17:39 2017 +0200 General: now provide a mechanism to package and download pre-built libraries '(closes' '#1106).' commit c81d1b45000f64a6f3fec9c99875b9ec8a9d9f4c Merge: baee3f76a 340294aee Author: Alan Garny '' Date: Fri May 5 19:33:14 2017 +0200 General: now provide a mechanism to package and download pre-built libraries '(#1106).' commit 340294aee45de9b3598a31054aef3abbeb5874a2 Author: Alan Garny '' Date: Fri May 5 19:29:57 2017 +0200 Slight updates to our downloads pages '(#1106).' commit 5a771ffcecd84970f1effda2a956bf907ae1c6a7 Author: Alan Garny '' Date: Fri May 5 19:22:14 2017 +0200 Retrieve our package files directly from GitHub '(#1106).' commit d562dcfd8fe4cf543b6cefea85c797d018eea9d4 Author: Alan Garny '' Date: Fri May 5 16:35:12 2017 +0200 Getting ready to generate new zlib package binaries '(#1106).' commit 742593f98c291765698adcc951e7c2e936ef9686 Author: Alan Garny '' Date: Fri May 5 16:28:43 2017 +0200 Have a package file generated in our main build directory, so that 'it'\''s' easier to find '(#1106).' commit 82d3595eca449128c1b4267e045233a3c5a3f8ef Author: Alan Garny '' Date: Fri May 5 16:21:15 2017 +0200 Generate a package file that can be uploaded on GitHub '(#1106).' commit fd3e70c5275108903eae5f35f0287c2932976653 Author: Alan Garny '' Date: Fri May 5 16:06:28 2017 +0200 Make sure that we properly generate the information about the call to the 'RETRIEVE_PACKAGE_FILE()' macro '(#1106).' commit 7a51b560259c32de6bec814fd91ff4aa82d436cd Author: Alan Garny '' Date: Fri May 5 14:24:48 2017 +0200 Output to the console the 'RETRIEVE_PACKAGE_FILE()' call that needs to be made '(#1106).' commit bd27f6492a72c63afa2e1496112883272cf917dd Author: Alan Garny '' Date: Fri May 5 13:58:44 2017 +0200 Make sure that we report the case where a file/package 'couldn'\''t' be uncompressed '(#1106).' commit e8341229e91efe2a20aea0613af8055028593f76 Author: Alan Garny '' Date: Fri May 5 13:39:06 2017 +0200 Make sure that we have at least one file to check when calling the 'RETRIEVE_PACKAGE_FILE_FROM()' macro '(#1106).' commit 0314ea6f27f4d685e787aae21f99c986a0be66dd Author: Alan Garny '' Date: Fri May 5 13:38:33 2017 +0200 Cleaned up the 'RETRIEVE_PACKAGE_FILE_FROM()' and 'RETRIEVE_BINARY_FILE_FROM()' macros '(#1106).' commit fd09d0fffdb97989a70e329d8846aefbd472b44d Author: Alan Garny '' Date: Fri May 5 13:05:31 2017 +0200 Some minor cleaning up. commit f611d706fa6a1b54514670e8797fa27c4f50cbec Author: Alan Garny '' Date: Fri May 5 12:48:47 2017 +0200 Some minor cleaning up. commit b86a2adef9f78d516d7881d6deccc695e2a42a06 Author: David Brooks '' Date: Fri May 5 11:23:14 2017 +1200 Cleanup: Remove unused sample plugin '(#1206).' commit a184b73df277bb30363f874a594744cf5cc12e04 Author: David Brooks '' Date: Fri May 5 11:19:37 2017 +1200 Cleanup: Remove the '`Single' 'Cell`' view sources from the Python branch... '(#1256).' commit ab604e86010285a494716ea908eac821390f7071 Merge: 66cca664f 5bd656faf Author: David Brooks '' Date: Fri May 5 11:08:38 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 10c1abb2647242d5a5bcf9123bfc606e73174d18 Author: Alan Garny '' Date: Wed May 3 17:02:16 2017 +1200 Some minor cleaning up. commit ecbb05c59a6dc08d16bc4e33ca23fd78bd4df67e Author: Alan Garny '' Date: Wed May 3 17:01:28 2017 +1200 Some minor cleaning up. commit deaccd46e316e653c2a232440614de15cc21e9c4 Author: Alan Garny '' Date: Wed May 3 16:54:57 2017 +1200 Reverted our use of 'CHECK_SHA1_FILES()' back in favour of 'CHECK_FILES().' Also introduced a convenience macro: 'CHECK_FILE()' '(#1106).' commit bbf2d9925cca281730d48a8c1f6dcfc54d2ecc4b Author: Alan Garny '' Date: Wed May 3 16:45:49 2017 +1200 Cleaned up 'CHECK_SHA1_FILES()' '(#1106).' commit 63c4827c608641b993ccf635c4e45712561f8c3e Author: Alan Garny '' Date: Wed May 3 16:35:38 2017 +1200 Use CHECK_SHA1_FILES_OK rather than CHECK_SHA1_FILES_FAILED '(#1106)' Kind of positive $'attitude\342\200\246' ':)' commit 5f2d63d52130a714bd35af87ab6688de77d383b3 Author: Alan Garny '' Date: Wed May 3 16:23:49 2017 +1200 Renamed 'CHECK_FILES()' with 'CHECK_SHA1_FILES()' '(#1106).' commit d43ee3e697e1f82039298e49c811d6d2557e4299 Author: Alan Garny '' Date: Wed May 3 16:13:55 2017 +1200 Cleaned up the 'CREATE_PACKAGE_FILE()' macro '(#1106).' commit 2746bcaaf1206256e6b8e332a50898af89b3c536 Author: Alan Garny '' Date: Wed May 3 15:56:56 2017 +1200 Some minor cleaning up. commit e35deefcaf11b10a1c0a2c484c64e64f81b4ae3f Author: Alan Garny '' Date: Wed May 3 15:56:27 2017 +1200 Cleaned up the 'CREATE_PACKAGE_FILE()' macro '(#1106).' commit 4286abfe497c0a04cd37b9664dd842b244e77430 Author: Alan Garny '' Date: Wed May 3 14:59:14 2017 +1200 Some minor cleaning up. commit d704992ee12a48a0cf29a0bc292856ccaa594682 Author: Alan Garny '' Date: Wed May 3 14:18:00 2017 +1200 Some minor cleaning up. commit 8f31fa8e69da807afbe2729a4b06895bf8b5c74c Author: Alan Garny '' Date: Wed May 3 14:13:25 2017 +1200 Some minor cleaning up. commit 87d2063a1f3559d4630e0f6b35f9b5602408d30f Author: Alan Garny '' Date: Wed May 3 14:03:19 2017 +1200 Some minor cleaning up. commit c1d79c58978f2fe9892e1daa30210570e76cfb35 Author: Alan Garny '' Date: Wed May 3 14:00:44 2017 +1200 'ADD_PLUGIN():' make sure that various commands are either executed directly or through a custom target based on the 'plugin'\''s' situation '(#1106).' commit eee16ac12f3cf60be526743388cba251049cfffa Author: Alan Garny '' Date: Wed May 3 13:36:40 2017 +1200 Some minor cleaning up. commit c8a44120b974849d6dcc4dffdc14915a2a49edce Author: Alan Garny '' Date: Tue May 2 14:57:40 2017 +1200 Addressed an issue with Ninja with regards to copying OpenCOR.com. commit 5a26c1825f11b1c650ea959f77876f92049eba34 Author: Alan Garny '' Date: Tue May 2 14:35:46 2017 +1200 Some minor cleaning up. commit 5af5dcfa1fa64f5189b4b4aab54183f236885d29 Author: Alan Garny '' Date: Tue May 2 14:35:12 2017 +1200 Replaced ''\''DEPENDS'\''' with ''\''DEPENDS_ON'\''' in 'ADD_PLUGIN().' commit 9a5f037ffca028b3e5c6a0c0a66744c1946582b9 Author: Alan Garny '' Date: Tue May 2 14:25:38 2017 +1200 Some minor cleaning up. commit 5cd7d2101742ff4310db2391a15fb381ebe9bdb6 Author: Alan Garny '' Date: Tue May 2 13:50:41 2017 +1200 Some minor cleaning up. commit e6ef6a1f1dd56481e93e1566278a2d818d92cb1a Author: Alan Garny '' Date: Tue May 2 13:49:11 2017 +1200 Make sure that a package is retrieved in the right directory '(#1106).' commit 587c89ca934bb04a9c1872c98f1a6a11f02a6e84 Author: Alan Garny '' Date: Tue May 2 11:34:48 2017 +1200 Some minor cleaning up. commit fa3215a9a932e9fc6637e4a6a1ab42742cb67d7c Author: Alan Garny '' Date: Tue May 2 11:04:22 2017 +1200 Updated our SHA-1 values '(#1106).' commit 32f8b90525d922e4d76ed43789e6d479f4b4f3e0 Author: Alan Garny '' Date: Tue May 2 10:32:32 2017 +1200 Various cleaning up '(#1106).' - Simplified our versioning mechanism for 'zlib;' - Replaced ''\''external'\''' with ''\''ext’;' - Moved the ''\''zlib'\''' contents to ''\''ext/proj’;' - Changed the order of some parameters in 'CREATE_PACKAGE_FILE(),' 'RETRIEVE_PACKAGE_FILE()' and 'RETRIEVE_PACKAGE_FILE_FROM();' - Replaced $'\342\200\230CHECKED_FILES\342\200\231' with '‘SHA1_FILES’;' - Use our forked version of 'zlib;' - Updated the SHA-1 values for zlib, now that the zlib package is hosted on 'opencor.ws;' - Various minor cleaning ups. commit ae239a843933c0b0ced7a18e020e965457c16dda Author: Alan Garny '' Date: Tue May 2 10:24:01 2017 +1200 Some minor cleaning up. commit baee3f76abadb1b24bf768803dc5561770f7f107 Merge: 5bd656faf a71a54a76 Author: Alan Garny '' Date: Tue May 2 10:02:05 2017 +1200 Merge remote-tracking branch ''\''dbrnz/issue_1106'\''' into issue1106. commit 5bd656fafd09a6ae197fbcfbe1054f06fe87b296 Merge: 29df012df f74a4bdc4 Author: Alan Garny '' Date: Fri Apr 28 15:52:08 2017 +1200 Some minor tweaks to make it possible to build OpenCOR on Ubuntu 16.04 LTS. commit f74a4bdc4067970e4792c2f24cdecbf8c7970e38 Author: Alan Garny '' Date: Fri Apr 28 15:17:06 2017 +1200 Force the use of GCC/G++ 4.9 on Linux. The idea is that we can then build OpenCOR just fine on Ubuntu 16.04 LTS. commit 2526dc5c563e2739b837eeb824037ae5b5dc19b3 Author: Alan Garny '' Date: Fri Apr 28 14:45:45 2017 +1200 Make sure that our cmake/runpath2rpath.c file builds fine on Ubuntu 16.04 LTS. commit 29df012df7d453073b7eaa6adc6107bed7d03005 Merge: c770ca274 4a88277c7 Author: Alan Garny '' Date: Fri Apr 28 13:30:00 2017 +1200 New snapshot. commit 4a88277c752b448b2ec0a95330646f0d3216788b Author: Alan Garny '' Date: Fri Apr 28 13:00:33 2017 +1200 New snapshot. commit c770ca2740b71c8f6070fbab9386eaa92be013a1 Merge: 381979f9f 1d662471a Author: Alan Garny '' Date: Fri Apr 28 10:43:51 2017 +1200 PMR Workspaces window: provide more succinct diff results '(closes' '#1294).' commit 1d662471aa8659514dfc12885a17ae0f54a47b3a Author: Alan Garny '' Date: Fri Apr 28 10:10:34 2017 +1200 Slight update to our downloads page '(#1294).' commit 8af7e3392536db5151db83bf092f8fe11bd1ab28 Merge: 0adb69e9a b498eff0f Author: Alan Garny '' Date: Fri Apr 28 10:06:29 2017 +1200 Merge branch ''\''cleaning-up'\''' into issue1294. commit 0adb69e9a05eb73edab5845560da5c8840ba7f0d Author: Alan Garny '' Date: Fri Apr 28 09:30:03 2017 +1200 PMR Workspaces window: slight CSS improvement for our synchronisation dialog '(#1294).' commit 0b18297d6425e3cbbd7b44417d684a4c04366808 Author: Alan Garny '' Date: Fri Apr 28 09:23:18 2017 +1200 Some minor cleaning up '(#1294).' commit 3188abb5a8ebae0cab016789c756439ff02d4bd1 Author: Alan Garny '' Date: Thu Apr 27 23:14:01 2017 +1200 PMR Workspaces window: highlight local changes within a block of changes in the synchronisation dialog '(#1294).' commit c88da201b9771e769ab8bc2d484b2655a0faf6fe Author: Alan Garny '' Date: Thu Apr 27 23:05:56 2017 +1200 Replaced instances of '"x"' '(where' x is only one 'character)' with ''\''x'\''.' Indeed, various Qt methods are optimised for use with a character as opposed to with a string. commit 7aaddc755a66010851f7c501279a3d57e7805d35 Author: Alan Garny '' Date: Thu Apr 27 18:31:39 2017 +1200 PMR Workspaces window: make sure that we always have an item selected in the synchronisation dialog after changes have been made outside of OpenCOR '(#1294).' commit 8ab89e2e597bd29df9226283df32487724dd0f6a Author: Alan Garny '' Date: Thu Apr 27 16:25:03 2017 +1200 Removed our reset CLI test since it resets '(!!)' all of our settings, which can be a pain when testing/debugging things. commit 75b84ba3c3019eae1827ac589a990e676689512e Author: Alan Garny '' Date: Thu Apr 27 16:18:32 2017 +1200 Fixed and improved the look of the last line of a diff report '(#1294).' commit 411c68f57263958c3f8ef4985ccad0d93a53ef81 Author: Alan Garny '' Date: Thu Apr 27 15:54:31 2017 +1200 Added a border to $'\342\200\230separate\342\200\231' our line numbers from the rest of the diff report '(#1294).' commit a1264312e4c52ad11d70e3939c86e92329cfeafc Author: Alan Garny '' Date: Thu Apr 27 15:33:09 2017 +1200 First go at having a UNIX-like diff report '(#1294).' commit 647e8dd0cc9c7252980dcb2b4431dc5d598cd569 Author: Alan Garny '' Date: Thu Apr 27 11:12:54 2017 +1200 Binaries for LibXDiff have now been generated for Windows, Linux and macOS '(#1294).' commit b148967eaff73a34f81a6f02e6926b95b3112f64 Author: Alan Garny '' Date: Thu Apr 27 11:01:34 2017 +1200 Getting ready to build only LibXDiff '(#1294).' commit ea42774853f5f1d0696ab1c68e0593f395b188c0 Author: Alan Garny '' Date: Thu Apr 27 11:00:30 2017 +1200 Some minor cleaning up '(#1294).' commit f74600a2118aae7c9e65685ac3cc916a4cfd8da4 Author: Alan Garny '' Date: Wed Apr 26 18:11:31 2017 +1200 Make sure that LibXDiff exports what we need on Windows '(#1294).' commit 5d66ac4308591a8b1e74a0c1119b32d01fa592be Author: Alan Garny '' Date: Wed Apr 26 17:43:55 2017 +1200 Some work on generating a UNIX-like diff '(#1294).' commit f656d192130e9f7ab3efffe9ae1f6368477f41fe Author: Alan Garny '' Date: Wed Apr 26 17:35:22 2017 +1200 Some work on generating a UNIX-like diff '(#1294).' commit 16d2009d141468e74f82112ecf620f37a238f72c Author: Alan Garny '' Date: Wed Apr 26 17:18:17 2017 +1200 Some work on generating a UNIX-like diff '(#1294).' commit 23b02e6c768904503747c1162e58eddc09e8f260 Author: Alan Garny '' Date: Wed Apr 26 17:17:29 2017 +1200 Always output the name of the file that has differences '(#1294).' commit 0f0d821fead703a52b647ddc86fe97bae11bddb6 Author: Alan Garny '' Date: Wed Apr 26 16:48:08 2017 +1200 Some work on adding LibXDiff as a third-party plugin '(#1294).' commit cf8139ade920eda7cc62c1736151d66648d65251 Author: Alan Garny '' Date: Wed Apr 26 16:45:42 2017 +1200 Some work on generating a UNIX-like diff '(#1294).' commit e26975f70a5bf832f987812f7fe39c0c75abf4fd Author: Alan Garny '' Date: Wed Apr 26 16:28:49 2017 +1200 Some work on adding LibXDiff as a third-party plugin '(#1294).' commit 50cc45857389061c029fc348e3ae21804c7efe67 Author: Alan Garny '' Date: Wed Apr 26 16:06:41 2017 +1200 Some work on adding LibXDiff as a third-party plugin '(#1294).' commit 8e7a09c1d8addedc6f032a99b326a70ffeeeb6ec Author: Alan Garny '' Date: Wed Apr 26 15:05:43 2017 +1200 Some work on adding LibXDiff as a third-party plugin '(#1294).' commit e42a9df6709c6b71c7d8da637a27dc9ba4172635 Author: Alan Garny '' Date: Wed Apr 26 13:59:48 2017 +1200 Some work on adding LibXDiff as a third-party plugin '(#1294).' commit 381979f9f486e58fc120edf457df8ecc1c115c91 Merge: b2e9aa130 b498eff0f Author: Alan Garny '' Date: Wed Apr 26 11:44:11 2017 +1200 Some minor cleaning up to our third-party libraries page. commit b498eff0fb2a5a82dc1617543ecc5c13e2fd6c03 Author: Alan Garny '' Date: Wed Apr 26 11:12:47 2017 +1200 Some minor cleaning up to our third-party libraries page. commit a71a54a764969516c6cf6db8844e1e37148a9585 Author: David Brooks '' Date: Tue Apr 25 21:34:34 2017 +1200 Pre-build zlib for Linux and Windows '(#1106).' commit 417eda290225d0c1bb528056b405d132fd0db011 Author: David Brooks '' Date: Tue Apr 25 19:26:19 2017 +1200 Tidy code. commit 8304134d4bf2445ec8c68104054831f1b815a616 Author: David Brooks '' Date: Tue Apr 25 19:23:05 2017 +1200 Use 'CMake'\''s' '`ExternalProject`' to build zlib and then package library using new mechanism '(#1106).' commit d3025d609dc19801bcc380cc89cd0103d016b74b Author: David Brooks '' Date: Tue Apr 25 18:58:34 2017 +1200 Exclude '`./external`' directories from source code management '(#1106).' commit 21c0b60e93d261411f7f90a312e2cd0ffc550bdb Author: David Brooks '' Date: Tue Apr 25 18:53:21 2017 +1200 Add CMake code to package and download pre-built libraries '(#1106).' commit 66cca664f89b3490bc0c8a750cbbca515c833408 Merge: cb1cd9a2d b2e9aa130 Author: David Brooks '' Date: Tue Apr 25 12:43:31 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit cb578cb5f3df404d9a9915af9597013ee2632c3d Author: Alan Garny '' Date: Mon Apr 24 17:16:20 2017 +1200 PMR Workspaces window: replace our use of std::wstring with QString with regards to diff_match_patch '(#1294).' commit b2e9aa130574853bbda2182ac3344d4df4f3a98b Merge: 6ff1713ec fe0236f3a Author: Alan Garny '' Date: Sat Apr 22 00:45:03 2017 +1200 CLI: can now include/exclude a plugin to/from the GUI version of OpenCOR '(#1292).' commit fe0236f3ad7762516e56004b8a28324f8ffde39b Author: Alan Garny '' Date: Sat Apr 22 00:12:39 2017 +1200 Slight update to our CLI documentation '(#1292).' commit 1d703e8d91aea7539ca34f9a1845b3d1550086fc Author: Alan Garny '' Date: Fri Apr 21 23:47:43 2017 +1200 Updated our CLI tests '(#1292).' Argh, as for HelpWindow, PMRWindow also relies on QtWebKit and therefore on the ICU libraries, hence it $'doesn\342\200\231t' work on Travis-CI '(see' commit e7e3630 and look for MACOS_QT_LIBRARIES in our main CMakeLists.txt 'file).' commit 485acd835ee460475d8703efc0d78faabb0644c9 Author: Alan Garny '' Date: Fri Apr 21 17:04:07 2017 +1200 Travis-CI: forgot to put the '#'\''s' 'back!' commit e7e3630a9361b7e73e565988f78cae6d3c200881 Author: Alan Garny '' Date: Fri Apr 21 17:02:15 2017 +1200 Updated our CLI tests '(#1292).' The reason it was failing on Travis-CI is that libicui18n.so.56 $'couldn\342\200\231t' be found. So, test against the PMR window instead. commit c6821475ea3b04632dc8a8a8857892d089d37b80 Author: Alan Garny '' Date: Fri Apr 21 16:41:38 2017 +1200 Travis-CI: make sure that we at least have a script to 'run!' commit eda8e64c705ed0f3aadb08de4d10460f68abbc4d Author: Alan Garny '' Date: Fri Apr 21 16:30:17 2017 +1200 Travis-CI: checking which gcc/g++ version we have before and after installing the gc//g++-4.9 packages. commit 9066372fef059ff2f716359670bf4cba08c747f8 Author: Alan Garny '' Date: Fri Apr 21 16:25:45 2017 +1200 Travis-CI: checking which g++ version we have before and after install the g++-4.9 package. commit 977c7f8e381b8d4266f61b38fdac315d49c2cf2a Author: Alan Garny '' Date: Fri Apr 21 16:13:59 2017 +1200 Travis-CI: trying to understand why we are getting some '"plugin' information not 'found"' messages '(#1292).' commit d766d3ae9f88d6ac8a832a9334331b9c43128967 Author: Alan Garny '' Date: Fri Apr 21 16:05:33 2017 +1200 Travis-CI: checking which version we are actually using on Linux '(#1292).' commit 02eac7c8600d2e0f333092b3eaa81a53d61f4bca Author: Alan Garny '' Date: Fri Apr 21 15:37:04 2017 +1200 Travis-CI: trying to understand why we are getting some '"plugin' information not 'found"' messages '(#1292).' Also added the lib32stdc++-4.9-dev package on Linux to see it prevents from having to build QScintilla '(see' commit 'e64a986).' commit e64a986d2e0f04bd3ef23282c46f6b6d22a0ea91 Author: Alan Garny '' Date: Fri Apr 21 15:07:24 2017 +1200 Travis-CI: check whether we are still forced to build QScintilla on Linux. commit 685ccd7e5a85d8c08f72372518435df985aae38c Author: Alan Garny '' Date: Fri Apr 21 14:42:15 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView, CellMLTools and SampleTools plugins '(#1292).' commit 5a793dc3e213afbd6c8ef6daa735c310b8d33626 Author: Alan Garny '' Date: Fri Apr 21 13:57:40 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins '(#1292).' commit 31bd3fcfac027bdc112c2b1d0af8358938a5993e Author: Alan Garny '' Date: Fri Apr 21 13:49:36 2017 +1200 Updated our CLI tests '(#1292).' commit 9c66b6e1407d7fc4f5b6c94d928e1ad76d81bd19 Author: Alan Garny '' Date: Fri Apr 21 13:48:57 2017 +1200 Updated our CLI tests '(#1292).' commit 566bd4c3098f3436e06795848ed97126a820660e Author: Alan Garny '' Date: Fri Apr 21 13:15:43 2017 +1200 Updated our Downloads and 'What'\''s' new pages '(#1292).' commit 45e2b78f4d7fc5d76a89f193609848d8aa5eae5b Author: Alan Garny '' Date: Fri Apr 21 13:09:45 2017 +1200 Updated our CLI documentation '(#1292).' commit 155652a9acc56bbe214da119ec7ff3ac40620b20 Author: Alan Garny '' Date: Fri Apr 21 13:03:09 2017 +1200 Can now include/exclude plugins '(#1292).' commit b7da3de7c36d6a7d99c4587d509c92be2c2406d5 Author: Alan Garny '' Date: Fri Apr 21 12:59:08 2017 +1200 Can now include/exclude plugins '(#1292).' commit 5478e3089e2addd9996fd7594bd4380e29252ead Author: Alan Garny '' Date: Fri Apr 21 12:58:34 2017 +1200 Some minor cleaning up. commit 7e1daaaf111983bfe7942d8171f85d9707f49073 Author: Alan Garny '' Date: Fri Apr 21 12:58:08 2017 +1200 CLI version: now accept the -e/-i options '(but' 'don'\''t' do anything with them 'yet)' '(#1292).' commit 050201db9019057d0aed2cd7ff51787c921c88c1 Author: Alan Garny '' Date: Fri Apr 21 11:27:46 2017 +1200 Some minor refactoring of our CLI code '(#1292).' commit f0a9a988a4efde02e6807adf8f09c05f67c0753b Author: Alan Garny '' Date: Fri Apr 21 11:27:10 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins '(#1292).' commit 499db088118f57f0a2459dfbdb6a7bfd07a6123a Author: Alan Garny '' Date: Fri Apr 21 10:52:58 2017 +1200 Slight improvement to the CLI help message of the CellMLTextView and CellMLTools plugins '(#1292).' commit 6ff1713ecba46f6d5934248979928ae9516eb058 Merge: 062f984b1 535555a2b Author: Alan Garny '' Date: Fri Apr 21 10:06:54 2017 +1200 QtWebKit: stripped the binaries on Linux and macOS. commit 535555a2b2a1f7691ae5fd940533ca6ad9ba802f Author: Alan Garny '' Date: Fri Apr 21 09:26:43 2017 +1200 Travis-CI: trying to re-enable macOS builds... once again... commit 5a51fa683c7201ddc3c776152e63687facab75a7 Author: Alan Garny '' Date: Fri Apr 21 09:24:55 2017 +1200 QtWebKit: stripped the binaries on Linux and macOS. commit 062f984b109260195e34170ae25fc6d4cdb62a97 Merge: a7be571d2 91d38d40b Author: Alan Garny '' Date: Thu Apr 20 19:26:16 2017 +1200 Added support for Zinc '(closes' '#15).' commit 91d38d40b8e7a2d08b45124bd6998c513e9f8abf Author: Alan Garny '' Date: Thu Apr 20 18:52:15 2017 +1200 Updated our Downloads page '(#15).' commit 1d6df2178075c306e1cb0fdd22b2197e169a4e5d Author: Alan Garny '' Date: Thu Apr 20 18:42:19 2017 +1200 Slight update to our third-party 'plugins'\''' readme file '(#15).' commit 49ee46e969dc8f8dc76ac0cbb358238e4aa12a6b Author: Alan Garny '' Date: Thu Apr 20 18:23:20 2017 +1200 Make sure we can build on Travis CI '(#15).' commit fef234fe2aba801a317dd41d0cb5ee3409b0a62c Author: Alan Garny '' Date: Thu Apr 20 18:03:09 2017 +1200 Update our Core French translations '(#15).' commit 4481eb518d3002bc00f8fbba94d8b659767f3d1f Author: Alan Garny '' Date: Thu Apr 20 17:58:58 2017 +1200 Added support for test plugins '(#15).' commit f2593c48dd8f1fab326ff36646d55fb72552715f Author: Alan Garny '' Date: Thu Apr 20 17:58:06 2017 +1200 Properly reference the Zinc library in our list of third-party libraries '(#15).' commit 7d36ca560a694f50d2236e1ffd3327a0bb81d920 Author: Alan Garny '' Date: Thu Apr 20 17:57:41 2017 +1200 Added the Zinc library to our file structure documentation '(#15).' commit 4f746bb0ef440832bd13ac8fcea669c3a570cc39 Author: Alan Garny '' Date: Thu Apr 20 17:57:04 2017 +1200 Added support for test plugins '(#15).' commit b5f89d171ab3084a42ad1820044ee236dc7cdc5b Author: Alan Garny '' Date: Thu Apr 20 17:53:45 2017 +1200 Replaced ENABLE_SAMPLES with ENABLE_SAMPLE_PLUGINS '(#15).' commit d53d0d73b3a288358ec73a19b7b145cc5995c65d Author: Alan Garny '' Date: Thu Apr 20 17:43:53 2017 +1200 Updated/added the link to the Zinc library '(#15).' commit a21d41db485c973fdd5e055bcbe1d675a8f5d60b Merge: 93df3d1eb a7be571d2 Author: Alan Garny '' Date: Thu Apr 20 13:40:37 2017 +1200 Merge branch ''\''master'\''' into issue15. commit a7be571d262f34396f490d5d56e85b244feb2fed Merge: 62dc278bc 4288c1654 Author: Alan Garny '' Date: Thu Apr 20 13:38:29 2017 +1200 PMR window: make sure that the busy widget always disappears '(#1288).' commit 4288c1654f2a2585dbe50f00c524e5da423605e6 Author: Alan Garny '' Date: Thu Apr 20 11:58:33 2017 +1200 Slight update to our downloads page '(#1288).' commit a9db51bb07f95d337d558df9748acfee19d5d5da Author: Alan Garny '' Date: Thu Apr 20 11:23:05 2017 +1200 Optimise our use of the busy widget for the PMR Workspaces window and the CellML Annotation view '(#1288).' commit 64943dec18562aa5f3985a96fde360ebe5819657 Author: Alan Garny '' Date: Thu Apr 20 11:22:23 2017 +1200 PMR window: make sure that the busy widget always disappears '(#1288).' commit 93df3d1ebc329f313c72672d80e070dea0ce5f4a Merge: 75afd04b5 62dc278bc Author: Alan Garny '' Date: Wed Apr 19 18:37:30 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 62dc278bc2a9d2c4079475999bad5eed9286080d Merge: eca792a00 a0e64ba7a Author: Alan Garny '' Date: Wed Apr 19 18:36:19 2017 +1200 Property Editor widget: 'don'\''t' go to the next property anymore when cancelling the editing of a property '(closes' '#1285).' commit a0e64ba7ae8b701e726f03ce1e7dd87c78057b07 Author: Alan Garny '' Date: Wed Apr 19 18:04:07 2017 +1200 Property Editor widget: 'don'\''t' go to the next property anymore when cancelling the editing of a property '(#1285).' commit 75afd04b57009b5f741742ee2dde52f37e6bf96b Author: Alan Garny '' Date: Wed Apr 19 17:11:37 2017 +1200 Deploy the xcbglintegrations on Linux '(#15).' We $'can\342\200\231t' use the menu and the Zinc window is completely black, but at least we are not seeing a $'\342\200\230transparent\342\200\231' OpenCOR '(although' the menu was working before we added those 'plugins).' commit 9ec5d98d3070ea65807cc727b2b90e4c8f29ec23 Merge: ec732543f 2c6e2bc9e Author: Alan Garny '' Date: Wed Apr 19 15:08:11 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 2c6e2bc9e2dc9860ad9724fcd5d2161eb8b8ab38 Merge: d0820fb90 eca792a00 Author: Alan Garny '' Date: Wed Apr 19 15:07:28 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit eca792a002271e48bed60b8652221f79396dfb8d Merge: 37cd9cbdb d0820fb90 Author: Alan Garny '' Date: Wed Apr 19 15:07:06 2017 +1200 Slight update to our prerequisites page '(following' the release of Xcode '8.3.2).' commit d0820fb90037d73587a86e64d7424d1c4b832954 Author: Alan Garny '' Date: Wed Apr 19 14:34:23 2017 +1200 Slight update to our prerequisites page '(following' the release of Xcode '8.3.2).' commit ec732543f6c4a5ea7110b5af60f10cf6babb96dc Author: Alan Garny '' Date: Tue Apr 18 21:35:19 2017 +1200 Zinc widget: back to using QOpenGLWidget '(#15).' Not sure why, but the issue with the overall size of OpenCOR is still 'there!?' commit b17afeaa73cade0b667b851215f4b7e0ba87e227 Author: Alan Garny '' Date: Tue Apr 18 21:25:40 2017 +1200 Zinc widget: trying with QGLWidget '(#15).' Although the rendering is now fine on macOS '(yes,' it $'wasn\342\200\231t' using 'QOpenGLWindow!?),' there is still the issue of the overall size of OpenCOR. Also, although we can undock our Zinc window, we cannot dock it back '(!?).' Finally, when starting OpenCOR, the Zinc window has a black background for a split second. Bottom line: we are reverting to using QOpenGLWidget, even though it has some $'drawbacks\342\200\246' commit eb9b731fdd7d27efd2fea1f9e9fd56c887feaa3e Author: Alan Garny '' Date: Tue Apr 18 20:55:39 2017 +1200 Zinc widget: back to being a ''\''proper'\''' widget '(embedding' a QOpenGLWindow-based 'window)' '(#15).' Note: we are committing this, $'but\342\200\246' we are going to have to use another approach since creating a window container for our ZincWidgetOpenglWindow object results in the whole OpenCOR application being $'\342\200\230small\342\200\231' when first starting it or when resetting it all. It looks as if our various 'sizeHint()' methods are not being taken into account. commit e457296ea8af9d9323a66f2f8fd1209c632c4121 Author: Alan Garny '' Date: Tue Apr 18 18:11:52 2017 +1200 Some minor cleaning up when it comes to using the opengl32sw.dll file on Windows '(#15).' commit eeccae3cee4608a5cec198d712f866efea9ee41a Author: Alan Garny '' Date: Tue Apr 18 15:58:55 2017 +1200 Rely on QOpenGLWindow rather than QOpenGLWidget '(#15).' To rely on QOpenGLWindow rather than QOpenGLWidget has several advantages including: - We $'dont\342\200\231' have to handle the case where the OpenGL context is about to be destroyed '(due' to docking/undocking our Zinc 'window);' and - Support for HiDPI resolutions works fine unlike with QOpenGLWidget. In other words, going from 1900x1200 to 1900x1200 HiDPI $'doesn\342\200\231t' result in the Zinc scene only taking a quarter of the window. However, we still have to handle the case of the font getting halved. commit f313b47161b4bc85c628ee2dd7fbf439909b1d3d Author: Alan Garny '' Date: Tue Apr 18 13:55:15 2017 +1200 Some minor cleaning up. commit 68ebc4cf9d3bec795104501e90ec9b364d699097 Merge: 698489d6b 37cd9cbdb Author: Alan Garny '' Date: Sun Apr 16 17:27:53 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 37cd9cbdbbdbd25624964479087387ca4e4a3658 Merge: 4af2740eb 46a7b4c7f Author: Alan Garny '' Date: Sun Apr 16 17:24:23 2017 +1200 CellML API: fixed a problem that caused OpenCOR to crash when defining a certain type of unit '(closes' '#1278).' commit 46a7b4c7f06db7a9c225138dcc092e98563bf8c2 Author: Alan Garny '' Date: Sun Apr 16 16:55:10 2017 +1200 Slight updates to our downloads and 'what'\''s' new pages '(#1278).' commit 8ea10ee9413ad5d06a1dc7930feb55763a9de49b Author: Alan Garny '' Date: Sun Apr 16 16:47:30 2017 +1200 CellML API: new Windows binaries '(#1278).' commit 49440c679742ec36fe8ef7b71972322ddfd393d0 Author: Alan Garny '' Date: Sun Apr 16 16:39:21 2017 +1200 CellML API: new Linux binaries '(#1278).' commit 38d5b2a7859c87cfd0f834352d45932331f3a0ba Author: Alan Garny '' Date: Sun Apr 16 16:12:56 2017 +1200 CellML API: new macOS binaries '(#1278).' commit 4af2740ebb7e86e327012d82e2b0f8ff0776fc9b Merge: a889b0444 7cd09e2f7 Author: Alan Garny '' Date: Sun Apr 16 14:13:12 2017 +1200 Build system: make sure that the dependencies of external binaries are properly referenced '(closes' '#1281).' commit 7cd09e2f743f3675b0372297de0b916797f8daed Author: Alan Garny '' Date: Sun Apr 16 13:42:21 2017 +1200 Build system: make sure that the dependencies of external binaries are properly referenced '(#1281).' commit a25a67e8a76a99b70c6ecbfcd399679323a156e2 Author: Alan Garny '' Date: Sun Apr 16 13:35:16 2017 +1200 Some minor cleaning up. commit 698489d6b61cab42a7b9d70038e346ecd2ef79c0 Merge: 4f32a6900 a889b0444 Author: Alan Garny '' Date: Sat Apr 15 11:54:41 2017 +1200 Merge branch ''\''master'\''' into issue15. commit a889b044493c861bd924d4a6d1999e1f02e2f0eb Merge: b954f9864 b2852e649 Author: Alan Garny '' Date: Sat Apr 15 11:47:24 2017 +1200 PMR-based windows: now clear the contents of those windows before switching instances '(closes' '#1279).' commit b2852e64942b4b39085dd18b5d105accd0c062f7 Author: Alan Garny '' Date: Sat Apr 15 11:11:39 2017 +1200 PMR-based windows: slight GUI improvement '(#1279).' commit c458c2c2b67d4d9d7fd7fce2fcb5fcd484348a42 Author: Alan Garny '' Date: Sat Apr 15 11:10:41 2017 +1200 Make sure that the showing/hiding of our busy widget is right '(#1279).' commit c30dc6cefc2e0341e4e7a0415798b2eab31f91b2 Author: Alan Garny '' Date: Sat Apr 15 10:41:59 2017 +1200 Slight update to our downloads page '(#1279).' commit b4414965b1c182f9c71417c8f960ca052549f267 Author: Alan Garny '' Date: Sat Apr 15 10:38:47 2017 +1200 PMR-based windows: now clear the contents of those windows before switching instances '(#1279).' commit e0857c28bee59c8e4ba54cc4719a65c3a5b97ca7 Merge: 681d19475 b954f9864 Author: Alan Garny '' Date: Sat Apr 15 09:51:22 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit 4f32a69007ccd015e218e03fcb5ecf3f296ee515 Merge: aa7398dc7 b954f9864 Author: Alan Garny '' Date: Sat Apr 15 09:50:49 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' into issue15 commit aa7398dc700ddd8c7fa94c7a90c12433c3782ac6 Author: Alan Garny '' Date: Fri Apr 14 12:02:40 2017 +1200 Zinc support: make sure that everything always works fine on Windows '(#15).' commit 57d812cb8adf610e2dc104a50b0df0b022e6be87 Merge: 8dbdc7486 681d19475 Author: Alan Garny '' Date: Thu Apr 13 21:35:27 2017 +1200 Merge branch ''\''master'\''' into issue15. commit b954f9864de3389fb5432a8e7ec061ff913dc345 Merge: af7a7bd9b 681d19475 Author: Alan Garny '' Date: Thu Apr 13 20:39:03 2017 +1200 Simulation Experiment view: slight update to our French translation file. commit 681d194759f366800f448900b6db67573c857092 Author: Alan Garny '' Date: Thu Apr 13 20:08:36 2017 +1200 Simulation Experiment view: slight update to our French translation file. commit 8dbdc7486f8af49aa8ed66e61fa149d21b201b87 Merge: 1048be516 59464143d Author: Alan Garny '' Date: Thu Apr 13 19:58:54 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 59464143dde43ca4d288ad4d55a8598b9f496c7b Merge: 8c5521f9f af7a7bd9b Author: Alan Garny '' Date: Thu Apr 13 19:58:27 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit af7a7bd9bb2ecea1732967e3220e42e3ab665c84 Merge: e7e18fb64 12ad6aea5 Author: Alan Garny '' Date: Thu Apr 13 19:56:33 2017 +1200 Property Editor widget: now allow for navigation using the '(Shift+)Tab' 'key(s)' '(closes' '#1273).' commit 12ad6aea52a939fb0b5cf0e2c4667c8b3389bb05 Author: Alan Garny '' Date: Thu Apr 13 18:58:48 2017 +1200 Property Editor widget: allow for navigation using the '(Shift+)Tab' 'key(s)' '(#1273).' commit 8c5521f9f718dbf83c2807a0b1e664657dcc2fa7 Author: Alan Garny '' Date: Thu Apr 13 12:03:07 2017 +1200 Property Editor widget: some minor cleaning up. commit 87070fa8487bfd4b9a8b8f49fc30db80f2f35335 Merge: 569dc1315 e7e18fb64 Author: Alan Garny '' Date: Thu Apr 13 11:51:44 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit e7e18fb64cbde254e25260aa421e7710c283329d Merge: 51f9dd7f0 188480f45 Author: Alan Garny '' Date: Thu Apr 13 11:39:46 2017 +1200 Property Editor widget: now allow for navigation using the '(Shift+)Tab' 'key(s)' '(closes' '#1273).' commit 51f9dd7f0dea50b66ea4d1d0535f767c0ec76df6 Merge: 55a766c45 569dc1315 Author: Alan Garny '' Date: Thu Apr 13 11:28:53 2017 +1200 Property Editor widget: some minor reworking of the code. commit 188480f45f035e5d065267d4d771c003354b16c8 Author: Alan Garny '' Date: Thu Apr 13 11:09:54 2017 +1200 Property Editor widget: allow for navigation using the '(Shift+)Tab' 'key(s)' '(#1273).' commit 569dc131564d3b988ac65f2fadcc55c9561fda6c Merge: 69186622b 55a766c45 Author: Alan Garny '' Date: Thu Apr 13 10:59:26 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit 69186622b6a79157e8cd5f75a4dc87e461f2cc2b Author: Alan Garny '' Date: Thu Apr 13 10:58:54 2017 +1200 Property Editor widget: some minor reworking of the code. commit cb1cd9a2d0ef2ce3e519cc64656815cdbf3284f2 Merge: b1607d9bd 55a766c45 Author: David Brooks '' Date: Wed Apr 12 20:20:44 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit b1607d9bdc3350847d58caee798c466ea8c9ec56 Author: David Brooks '' Date: Wed Apr 12 20:17:57 2017 +1200 Miscellaneous code tidy. commit 0f704cdbc1456a0b4799f6e847b266aa073d87e5 Author: David Brooks '' Date: Wed Apr 12 20:17:24 2017 +1200 Allow Solver properties to be set from Python '(#1270).' commit 1048be5163046b24c741c1c7ad1be0b0757ff3e5 Merge: 51fd00c62 e97280524 Author: Alan Garny '' Date: Wed Apr 12 18:10:35 2017 +1200 Merge branch ''\''master'\''' into issue15. commit e9728052406d85e9337ebffded1244c250aa6c8e Merge: 2bb9f55bd c61ff31c9 Author: Alan Garny '' Date: Wed Apr 12 18:07:20 2017 +1200 Merge remote-tracking branch ''\''opencor/master'\''' commit 55a766c45f2d209db97548991cb3b5ebc9c89f4c Merge: c61ff31c9 3736421a4 Author: Alan Garny '' Date: Wed Apr 12 18:06:56 2017 +1200 File Handling interface: removed '`isIndirectRemoteFile()`' since 'it'\''s' not being used anymore '(closes' '#1267).' commit c61ff31c993dc61b9c82f08987daa2118fc51233 Merge: dffcff3c5 2bb9f55bd Author: Alan Garny '' Date: Wed Apr 12 18:04:50 2017 +1200 Slight update to our downloads page following issue '#1267.' commit 2bb9f55bda98db453e8cb375d39802c177692dc3 Author: Alan Garny '' Date: Wed Apr 12 18:02:24 2017 +1200 Slight update to our downloads page following issue '#1267.' commit 3736421a4733af0a70dcfd7e9160fa8e65572486 Author: Alan Garny '' Date: Wed Apr 12 17:40:59 2017 +1200 Some slight updates to our documentation as a result of issue '#1267.' commit b5f196f94dd976ce2170392ed147c85ad2cd4522 Author: Alan Garny '' Date: Wed Apr 12 17:32:31 2017 +1200 Some minor refactoring as a result of issue '#1267.' commit 833ec96d21bfeb4034e7610ce4f2662e53c5b9e8 Author: Alan Garny '' Date: Wed Apr 12 17:13:14 2017 +1200 Some minor cleaning up. commit 88bdd214afe962eb4e82de828bf99b55f267cc69 Author: Alan Garny '' Date: Wed Apr 12 17:13:03 2017 +1200 Removed '`isIndirectRemoteFile()`' from our File Handling interface '(#1267).' commit 51fd00c62b94a3e410790b1658f83d85b1612f14 Author: Alan Garny '' Date: Wed Apr 12 14:46:40 2017 +1200 Slight update to our Zinc readme file '(#15).' commit 0d9bcf0868a41cb31d7618428fa097c04155e4dd Merge: 14dcd874a dffcff3c5 Author: Alan Garny '' Date: Wed Apr 12 13:23:46 2017 +1200 Merge branch ''\''master'\''' into issue15. commit dffcff3c5c21d4fb2a53107133bb3c63f5dea78e Merge: 73a550f96 fc38ed931 Author: Alan Garny '' Date: Wed Apr 12 13:20:55 2017 +1200 libSBML: upgraded to version 5.15.0 '(closes' '#1262).' commit fc38ed9313ba2f265000e27f604b61515318fe6d Author: Alan Garny '' Date: Wed Apr 12 11:57:16 2017 +1200 libSBML: slight update to our tests '(#1262).' commit da7ebe1b0b9ee18fa4674d14b9684c138bc14f38 Author: Alan Garny '' Date: Wed Apr 12 11:53:59 2017 +1200 Updated our libSBML binaries to version 5.15.0 '(#1262).' commit 9a34e9dde86e3a81e1322e1b0a57f05b5c0fe8d1 Author: Alan Garny '' Date: Wed Apr 12 11:46:52 2017 +1200 Updated our libSBML include files '(#1262).' commit d2020d47f3d6dfa35edd2a51a3601104cae4ddff Author: Alan Garny '' Date: Wed Apr 12 11:32:06 2017 +1200 Slight update to our libSBML README file, as well as to our third-party libraries file '(#1262).' commit 73a550f9641f4f6fd3d7889798139073e3b4e66d Author: Alan Garny '' Date: Wed Apr 12 10:46:35 2017 +1200 jQuery: upgraded to version 3.2.1 '(closes' '#1264).' commit 36e53d66cc5048faa4d138b048c99282bf8877f9 Author: David Brooks '' Date: Tue Apr 11 18:16:45 2017 +1200 We need to specify OpenSSL libraries as well as ROOT_DIR to ensure CMake finds them '(#1106).' commit 9f0557336420ff5fd41f71bcf83eab8ebe70869d Merge: 051db568d 81b72ac7d Author: David Brooks '' Date: Tue Apr 11 16:13:59 2017 +1200 Merge branch ''\''master'\''' into pythonplugin commit 81b72ac7dea305771292023f8fddccb8f0e6fd9a Author: Alan Garny '' Date: Fri Apr 7 15:48:11 2017 +1200 Some minor cleaning up. commit 14dcd874a4e009e22704691c2d3cd0241e28bceb Merge: dd7f83466 7b5b8c0c3 Author: Alan Garny '' Date: Fri Apr 7 13:10:09 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 7b5b8c0c3a83e29d0234d479883f3acbd7c94635 Merge: 7a4b7a032 a19b4d16a Author: Alan Garny '' Date: Fri Apr 7 12:58:19 2017 +1200 General: now 'don'\''t' make our windows have a minimum size '(closes' '#1260).' commit 7a4b7a032874eace3511ead09edbfcef29f6ac38 Author: Alan Garny '' Date: Fri Apr 7 12:34:17 2017 +1200 Slight update to our 'developer'\''s' documentation '[ci' 'skip].' commit a19b4d16aff56775b8ff403cd49464a666e9a93e Author: Alan Garny '' Date: Fri Apr 7 12:26:35 2017 +1200 Slight update to our Downloads page '(#1260).' commit fb3978b639389b1bbc33079d13078c014b56706d Author: Alan Garny '' Date: Fri Apr 7 12:24:50 2017 +1200 Make sure that our PMR Workspaces window starts with the right size '(when' OpenCOR is launched for the very first 'time)' '(#1260).' commit dd7f8346673ceb529ed698940ab2fc7fef0a766e Author: Alan Garny '' Date: Fri Apr 7 00:54:15 2017 +0200 Make sure that the .ex file has a valid name on Windows '(#15).' commit 3a46c100fe39c40d23f15bf1228938c8b20e423a Author: Alan Garny '' Date: Fri Apr 7 09:52:15 2017 +1200 Some minor cleaning up. commit c4ee956a80e4031b1684bf6433e28f3d65eb7ee2 Author: Alan Garny '' Date: Fri Apr 7 09:39:50 2017 +1200 Some more reworking of the way we lay out our PMR and PMR Workspaces windows '(#1260).' commit 7a1ca7161394f53ac8ad669f4dc887e040da9feb Author: Alan Garny '' Date: Fri Apr 7 09:16:00 2017 +1200 Started reworking the way we lay out our PMR and PMR Workspaces windows '(#1260).' commit 9cbd0f360c5e1a1d6f9ef067bd114496b89020b3 Author: Alan Garny '' Date: Thu Apr 6 19:01:13 2017 +1200 Remove the minimum size for all of our windows '(#1260).' commit 2129f3e418f49252462fe80c9c731e1209e19205 Author: Alan Garny '' Date: Thu Apr 6 08:37:18 2017 +0200 Make sure that we can build OpenCOR+Zinc on Windows in debug mode '(#15).' commit 3d91e5c71ff5153fdde44d6065d47af513ad5b71 Author: Alan Garny '' Date: Thu Apr 6 16:13:52 2017 +1200 Now have Zinc binaries for all three platforms '(#15).' commit 1667350ccc72087067a1ab851396312dcc770567 Author: Alan Garny '' Date: Thu Apr 6 13:27:50 2017 +1200 Some minor cleaning up. commit 7246482e596cefcfa0f447f040ac08148ab15da0 Merge: f8f3b994b 6a8d2a5a2 Author: Alan Garny '' Date: Thu Apr 6 10:31:40 2017 +1200 Merge branch ''\''master'\''' into issue15. commit f8f3b994bb93096c9a02bccc7bce02dd558c43b7 Author: Alan Garny '' Date: Wed Apr 5 21:27:05 2017 +1200 Merge branch ''\''master'\''' into issue15. commit 6a8d2a5a2306ff549024b73404dd3ff3d2f4ed7e Merge: fbee77f0b 99f27c018 Author: Alan Garny '' Date: Wed Apr 5 21:24:05 2017 +1200 Renamed the '`Single' 'Cell`' view to '`Simulation' 'Experiment`' view '(closes' '#1256).' commit 99f27c01857dcecddb2aa96f6ef87962b9fb7517 Author: Alan Garny '' Date: Wed Apr 5 20:49:29 2017 +1200 Updated our downloads page '(#1256).' commit 0779e56d84c8b2e671344f29a05a265eff1699c3 Author: Alan Garny '' Date: Wed Apr 5 20:42:34 2017 +1200 Replaced/renamed singlecell/SingleCell with simulationexperiment/SimulationExperiment '(#1256).' commit cbfc599e4669b9c2bfc3f59add314effcd398b1f Author: Alan Garny '' Date: Wed Apr 5 20:02:33 2017 +1200 Updated our documentation with regards to our ''\''new'\''' Simulation Experiment view '(#1256).' commit a5289eab2e44c1597defe921b6254bc8613b06e8 Author: Alan Garny '' Date: Wed Apr 5 19:49:52 2017 +1200 Renamed the '`simulation/SingleCellView`' folder to '`simulation/SimulationExperimentView`' '(#1256).' commit df857d831cb0102ba8ca7bef4036f2b0aeeb846f Author: Alan Garny '' Date: Wed Apr 5 19:44:01 2017 +1200 Some minor cleaning up. commit 129fd574c9a846659b90a3eb9cba28008da0d8ec Author: Alan Garny '' Date: Wed Apr 5 19:21:37 2017 +1200 Replaced '"Single' 'Cell"' with '"Simulation' 'Experiment"' everywhere '(#1256).' commit fbee77f0bb162c81d934e2ae1bfb9ced06d9a25b Merge: d445a8b06 0bbfb7e45 Author: Alan Garny '' Date: Wed Apr 5 18:51:14 2017 +1200 CellML Text view: the import of a CellML file is now properly converted '(closes' '#1257).' commit 0bbfb7e45263dc02c4991a601405da9f45fb263d Author: Alan Garny '' Date: Wed Apr 5 17:46:58 2017 +1200 Slight updates to our downloads pages '(#1257).' commit 708b3a0f5dec69e0300f33f4f95b32d4c967c4cb Author: Alan Garny '' Date: Wed Apr 5 17:43:58 2017 +1200 CellML Text view: the import of a CellML file is now always properly converted '(#1257).' commit d445a8b06af0b3a1a20770294b7906a216b3c946 Author: Alan Garny '' Date: Wed Apr 5 14:37:33 2017 +1200 Some minor cleaning up '[ci' 'skip].' commit befe214ac515da23f5bb8edf0ea00c348a586358 Author: Alan Garny '' Date: Tue Apr 4 18:52:11 2017 +1200 Some minor cleaning up. commit 53be83f56ab745472b2faa7c2001c029eb77c798 Author: Alan Garny '' Date: Tue Apr 4 18:25:57 2017 +1200 Zinc widget: now let people know when our device pixel ratio changes '(#15).' commit 38dec2cf1546bcb863e9246dbcbf3087f2a81e17 Author: Alan Garny '' Date: Tue Apr 4 16:12:12 2017 +1200 Zinc widget: handle the case where we switch from a normalDPI screen to a HiDPI screen. commit 5f06e7bee07eefae4334258e43f32c35fae21c44 Author: Alan Garny '' Date: Tue Apr 4 15:55:05 2017 +1200 Some minor cleaning up. commit b742f0cbf5c3b3321ef3ea0a83f9faee1a402200 Author: Alan Garny '' Date: Mon Apr 3 14:20:35 2017 +1200 'Don'\''t' use OpenGL indirect rendering on Linux anymore. This was previously needed when testing OpenCOR on our Linux virtual machine, but it was probably due to some VirtualBox settings '(e.g.' 3D acceleration being 'enabled).' What is certain is that our actual Linux VM $'doesn\342\200\231t' require LIBGL_ALWAYS_INDIRECT=1 for OpenCOR to work fine '(incl.' for running simulations, i.e. using LLVM, which was the original reason for setting LIBGL_ALWAYS_INDIRECT to '1).' commit 651348b614347bec4dd75da18d612b17d3dc759b Author: Alan Garny '' Date: Mon Apr 3 14:03:10 2017 +1200 Updated our Zinc binary on Linux '(#15).' commit e699363be3344e40074ef7656116f2d952433b3c Author: Alan Garny '' Date: Mon Apr 3 09:44:24 2017 +1200 Use result.hpp rather than status.hpp '(#15).' commit 725c4e0130d79efb7052394a2ccf0e324e1a0815 Author: Alan Garny '' Date: Fri Mar 31 19:29:20 2017 +1300 Some minor cleaning up '(#15).' commit 92b443b4e47e9f5804efaa0818bed690234e58c9 Author: Alan Garny '' Date: Fri Mar 31 19:09:06 2017 +1300 Now have a release Zinc binary on Windows '(#15).' commit b0db611cf8140d0c615a1a01dba2012d1f68abd7 Author: Alan Garny '' Date: Fri Mar 31 18:55:43 2017 +1300 Now have a release Zinc binary on Windows '(#15).' commit 08054c3f9b2788ecdb69bae12b032828ce5d3cc4 Author: Alan Garny '' Date: Fri Mar 31 16:49:33 2017 +1300 Some minor cleaning up '(#15).' commit 892b993e1be2673f17be3dd25f8dda141c2dcc5e Author: Alan Garny '' Date: Fri Mar 31 16:25:59 2017 +1300 Updated the Zinc header files '(#15).' commit 7830b0673712709cfca1ff5794d4e705e1be4a67 Author: Alan Garny '' Date: Fri Mar 31 16:19:13 2017 +1300 Updated our Zinc binary on macOS '(#15).' commit f256b813a30660d8787ba0328142be4baff6a019 Author: Alan Garny '' Date: Fri Mar 31 16:16:38 2017 +1300 Now try to use the ''\''proper'\''' way to build Zinc '(#15).' commit 1694e911fa715d9c728c90d0ce7915ce6782d60f Merge: 763d90d55 a2ecd4076 Author: Alan Garny '' Date: Fri Mar 31 11:15:15 2017 +1300 Merge branch ''\''master'\''' into issue15 commit a2ecd40766847cda1cb5c2d1eaebb12bbc944831 Author: Alan Garny '' Date: Fri Mar 31 11:14:53 2017 +1300 Slight update to our prerequisites page '[ci' 'skip].' This is following the release of Xcode 8.3. commit 763d90d5585b207fde89055ccbcc16b59c7dcda1 Merge: 9474c63df ad6d75ecb Author: Alan Garny '' Date: Fri Mar 24 15:27:23 2017 +0100 Merge branch ''\''master'\''' into issue15. commit ad6d75ecb14fe86d8f7e32db102aa934dfe01486 Author: Alan Garny '' Date: Fri Mar 24 15:26:51 2017 +0100 New snapshot. commit 22f46a4f143c973d15e191e71505ac42a74f2a3d Merge: c78ef209b 25fa7171b Author: Alan Garny '' Date: Fri Mar 24 15:22:20 2017 +0100 CellML Text view: now properly process unknown elements '(closes' '#1253).' commit 25fa7171bd54e6658da15804a1f50ae2cf45568d Author: Alan Garny '' Date: Fri Mar 24 14:46:26 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit 38717787049f868d20432bbf97f97bf754368505 Author: Alan Garny '' Date: Fri Mar 24 14:39:18 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit dbc87fc4e63072255c53a4a64819f5d11b19fc1f Author: Alan Garny '' Date: Fri Mar 24 14:30:08 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit 2b577279a804d78a80d09fb6fac706540da4040f Author: Alan Garny '' Date: Fri Mar 24 13:59:53 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit 827ac2265ef85410e6fd3ba2968b6da84408cb15 Author: Alan Garny '' Date: Fri Mar 24 13:48:08 2017 +0100 CellML Text view: make sure that our internals have been reset before converting a CellML file. commit f24758bdcf7c4e4a4931a4259c3477a760e23cb5 Author: Alan Garny '' Date: Fri Mar 24 11:09:47 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit 1f41a904215b06f8e62d250356282bbc41752b13 Author: Alan Garny '' Date: Fri Mar 24 11:09:13 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit daf83c225a9bbe8fd11071cb0490145442c778a2 Author: Alan Garny '' Date: Fri Mar 24 10:58:09 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit d63bdee212ee664fe0efa7941271fd751ef375b3 Author: Alan Garny '' Date: Fri Mar 24 10:57:30 2017 +0100 CellML Text view: some work on properly processing unknown elements '(#1253).' commit 9474c63dff6cf17301b2e91e41cee5dfdd098cbc Author: Alan Garny '' Date: Thu Mar 23 15:55:54 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit b8aa55b2e6823bbde07f8152665729928d728770 Merge: 80c5fe6df c78ef209b Author: Alan Garny '' Date: Thu Mar 23 14:54:32 2017 +0100 Merge branch ''\''master'\''' into issue15. commit c78ef209bb00c4eafb0b8d47839c3ad4abe84cfd Author: Alan Garny '' Date: Thu Mar 23 14:33:19 2017 +0100 Travis-CI: disabling '(once' 'again)' our macOS builds... The queue seems to be back to normal '(which' is 'nice!),' but they only allow one job at a time, so not good enough for us. commit 677ee12122f8057bd5107a17ec8697216a9a9ce6 Author: Alan Garny '' Date: Thu Mar 23 14:14:40 2017 +0100 Slight update to our third-party libraries page '[ci' 'skip].' commit ad3f38ff3931a83b63ddd1c1163ef53347951f6b Author: Alan Garny '' Date: Thu Mar 23 14:12:23 2017 +0100 Travis-CI: trying to re-enable macOS builds... commit 2b661b70d0c9861df4493b6a51d8eb2ee6c377a1 Author: Alan Garny '' Date: Thu Mar 23 14:10:32 2017 +0100 jQuery: upgraded to version 3.2.0 '(closes' '#1252).' commit fc54a1ec8a7914290fba4f78049abdb3b24d67f2 Author: Alan Garny '' Date: Thu Mar 23 14:08:19 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 80c5fe6dfaf160ea79257ca6a6f43ed8d301be9c Merge: 89e6d5a1a 87ce94526 Author: Alan Garny '' Date: Sat Mar 18 03:32:08 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 87ce945269504cf3516f1014b781a44ca9b40c30 Author: Alan Garny '' Date: Sat Mar 18 03:29:42 2017 +0100 Slight updates to the Downloads pages '[ci' 'skip].' commit a454d503b20ce02f11b3824cde12646e974f40de Merge: dc8d90662 1def742cb Author: Alan Garny '' Date: Sat Mar 18 03:28:38 2017 +0100 LLVM: upgraded to version 4.0.0 '(closes' '#1248).' commit 1def742cb56caee1621cbe3bccc867477c6786ba Author: Alan Garny '' Date: Sat Mar 18 02:52:04 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' This is needed for $'Travis-CI\342\200\246' commit f398f70e58cfd13407bf6973dbc0bc95b4464719 Author: Alan Garny '' Date: Sat Mar 18 02:49:28 2017 +0100 Travis-CI: well, they seem to be allowing only one macOS job at a time '(while' it used to be 'two),' so disabling macOS builds... once again... ':(' commit a4967157c9d8fae0c0205236010f93f9e6610cca Author: Alan Garny '' Date: Sat Mar 18 02:40:46 2017 +0100 Travis-CI: could the macOS queue finally back to ''\''normal'\''?...' commit d7982d6dc3334a35d73abbf3ebace7588df6ebfb Author: Alan Garny '' Date: Sat Mar 18 02:38:45 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit 2d66b0cb5073039f2f804ef21337eec443f699b5 Author: Alan Garny '' Date: Sat Mar 18 02:31:35 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit e99c982bbbe47d9d9de2acceb6b941a28c091d07 Author: Alan Garny '' Date: Sat Mar 18 02:02:31 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit f1bc74173e57da88d1e101ee13beb2bac49bfa0f Author: Alan Garny '' Date: Sat Mar 18 00:59:24 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit 074f134d7647d6d83d64000e55a29662ffe09a2d Author: Alan Garny '' Date: Fri Mar 17 21:36:08 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit 61dd2aa57b5fba3bfa7407e5b1a53e6fc0a9893e Author: Alan Garny '' Date: Fri Mar 17 21:00:33 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit 6a289cd01a8952ab032eb42dd6c7cc1e58436efa Author: Alan Garny '' Date: Fri Mar 17 19:47:14 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit ea93f7928ec7049e75b404873a382009a69fc65f Author: Alan Garny '' Date: Fri Mar 17 19:18:01 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit f34e0b50f93ca0acb8e8ac3631b2fd5ff1f8b161 Author: Alan Garny '' Date: Fri Mar 17 18:36:51 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit b02a302a704f4c0a2c28ba045b723aa6468af0e7 Author: Alan Garny '' Date: Fri Mar 17 18:35:05 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit afd55ddbb289d37a57b86c46f7df6ea05edb8e71 Author: Alan Garny '' Date: Thu Mar 16 20:15:34 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit 32c5263c20d4fe2a7ffd287f5579457652250df1 Author: Alan Garny '' Date: Thu Mar 16 19:54:36 2017 +0100 LLVM: some work on upgrading to version 4.0.0 '(#1248).' commit dc8d90662d4dd29048632fc182b0248bb8a65f01 Author: Alan Garny '' Date: Thu Mar 16 17:55:05 2017 +0100 Make sure that our different windows have a minimum size '[ci' 'skip].' It looks better that way, especially for the PMR Workspaces window which, by default, was showing a user message with a $'\342\200\230small\342\200\231' default size. commit 19bc4f6d55dcf8db15a5c584d75acf5045b2e756 Author: Alan Garny '' Date: Thu Mar 16 17:45:54 2017 +0100 We 'don'\''t' actually need to override 'sizeHint()' for some of our widgets '[ci' 'skip].' commit f0b5e1b22f9d6aff1a326dc026761a048b7adac4 Author: Alan Garny '' Date: Thu Mar 16 17:44:51 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 2473331a1c626ec0a1a7df6be376c2b9460777ad Author: Alan Garny '' Date: Thu Mar 16 15:56:55 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 51b74c2d627cf0366acffdbc61ca9b0cade89664 Author: Alan Garny '' Date: Thu Mar 16 15:30:37 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 9bf07bb7ec28ce312046a02805eacefb5bb7a5e1 Author: Alan Garny '' Date: Thu Mar 16 14:17:20 2017 +0100 PMR-based windows: slight improvement to the way we show the PMR site being used '[ci' 'skip].' commit 051db568daecc79cfdb7582c09c67bfe312f40d6 Merge: 9ac513540 4f9800923 Author: David Brooks '' Date: Thu Mar 16 10:17:35 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 9ac513540f2d765391e56cd6f0c9d1dfd3e37c52 Author: David Brooks '' Date: Thu Mar 16 10:16:15 2017 +1300 Enable Python to access and modify a 'simulation'\''s' parameters '(#1087).' commit ea6021d4a1b844396d57fce6dbad1acfdca4758c Author: David Brooks '' Date: Thu Mar 16 10:12:27 2017 +1300 Allow Python to get the size of a DataStoreVariable '(#1086).' commit f42918eb5dc5213c3355b1aa1ac11368b91c7e01 Author: David Brooks '' Date: Thu Mar 16 10:11:03 2017 +1300 Throw an exception if we 'can'\''t' run a simulation from Python '(#1087).' commit fdb19fe6c069bd6f624eb6e224c86218e8228926 Author: David Brooks '' Date: Thu Mar 16 10:09:46 2017 +1300 Tidy up code '(#1086).' commit 4176521dfc003705a022308808d052b524686582 Author: David Brooks '' Date: Thu Mar 16 10:05:50 2017 +1300 Suppress compile warnings when using 'Python'\''s' headers '(#1085).' commit 4f9800923f33d2744316e39f44235ed100af66a1 Author: Alan Garny '' Date: Wed Mar 15 19:34:21 2017 +0100 User Message widget: provide a size hint '[ci' 'skip].' commit d04e0ec5f5285171729bbe64d8f6ea6a27f46c50 Author: Alan Garny '' Date: Wed Mar 15 19:24:43 2017 +0100 PMR-based windows: make sure that the site name information gets properly translated '[ci' 'skip].' commit c43a113d5cd978c82b8c06c4a0337914d8197047 Author: Alan Garny '' Date: Wed Mar 15 19:12:24 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit c8e1572a9759e26060ea06ef5d246c0d45bad80f Author: Alan Garny '' Date: Wed Mar 15 17:36:20 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit b50c8b04ba3cad129f8bef8c7914c59e8f711313 Author: Alan Garny '' Date: Wed Mar 15 17:02:22 2017 +0100 PMR support: potentially addressed a rare '(?)' issue with authentification '[ci' 'skip].' Sometimes when authenticating, the web page $'isn\342\200\231t' fully loaded and we are told to close the browser. Yet, we want to wait for the page to be fully loaded '(since' it looks 'better)' and we used to call 'QTimer::singleShot(0,' 'SLOT(closeBrowser())),' but it looks like it $'didn\342\200\231t' give '(in' some rare 'cases)' time for the progress bar to update itself, meaning that the browser would never close '(unless' we closed it 'manually).' To call 'QTimer::singleShot(1,' 'SLOT(closeBrowser())),' i.e. we have a 1ms delay, seems to be doing the $'trick\342\200\246' commit c8d2f5e298fbc7368fb198f31ae024d1913d360d Author: Alan Garny '' Date: Wed Mar 15 13:07:59 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 623e0f27e28dec3d34acefeff11c4ba1ff3a807a Author: Alan Garny '' Date: Wed Mar 15 11:07:21 2017 +0100 Slight update to our prerequisites page '[ci' 'skip].' commit e97224326115d874af34c8cf9464957d668048ef Author: Alan Garny '' Date: Wed Mar 15 10:10:48 2017 +0100 New snapshot. commit 89e6d5a1a09dd31fd8eed402146beb24762bb99c Author: Alan Garny '' Date: Wed Mar 15 09:53:23 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit de4f400d46898aaf007ead60ea2920d7e5e228f8 Author: Alan Garny '' Date: Tue Mar 14 17:28:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit d6074df7e636e2612b5ca101414db087e4cb7f3a Author: Alan Garny '' Date: Tue Mar 14 14:56:33 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 0d50cedf9f8537085f060329c25631e6484631eb Author: Alan Garny '' Date: Tue Mar 14 14:39:32 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 3613a8f5b12df51f024096f83e77fb56f8b2abe0 Merge: 04cb9fec8 7f9470060 Author: David Brooks '' Date: Tue Mar 14 20:51:42 2017 +1300 Merge branch ''\''biosignalml_exceptions'\''' into pythonplugin commit 7f94700607ee61fa9309350c466d90d8889cb5f6 Author: David Brooks '' Date: Tue Mar 14 20:50:46 2017 +1300 Catch all exceptions that BioSignalML might throw. commit 04cb9fec889ec0c8ea4775a9b1597ac40235b59e Author: David Brooks '' Date: Tue Mar 14 18:03:59 2017 +1300 Fix issues with deleting and creating data store array variables '(#1086).' commit 259b451a3c879005bc8b2f231d22afdfb0c72790 Author: David Brooks '' Date: Tue Mar 14 15:23:09 2017 +1300 Return dictionaries of data store variables to Python and work on allowing Python code to set parameter values '(#1086).' commit c90039f42af82bf1c8f60462f98763ca2259f4ff Author: David Brooks '' Date: Sun Mar 12 19:40:12 2017 +1300 Add '`openSimulation()`' and '`openRemoteSimulation()`' to 'OpenCOR'\''s' Python module '(#1086).' commit e3186a2b0859e2f7368ff679046699db694d7264 Author: David Brooks '' Date: Sun Mar 12 19:39:02 2017 +1300 Tidy code '(#1086).' commit 4bfc64575e723dc70fb058fcccf744dc44459a96 Author: David Brooks '' Date: Sun Mar 12 19:35:46 2017 +1300 Add '`CentralWidget::localFileName()`' to get the local file name of an open remote url. commit d2a9f8cace9e8fb55ff2cc3ffdf9f4483f01fc6f Merge: 9803de653 d86f891f9 Author: Alan Garny '' Date: Fri Mar 10 17:58:37 2017 +0100 Merge branch ''\''master'\''' into issue15. commit d86f891f9e1ee461fbeb5fd63fe9da4f35706f8f Author: Alan Garny '' Date: Fri Mar 10 16:52:18 2017 +0100 PMR Workspaces window: now propagate the state of a workspace in the icon used for a folder '(closes' '#1246).' commit e5fc6452cfdca3f93260b51a43c5644f7c83e28d Author: Alan Garny '' Date: Fri Mar 10 16:41:51 2017 +0100 PMR Workspaces window: favour conflict over unstaged icon '[ci' 'skip].' commit 480aca42c05de7e193a0b626c8fa4842a24ab031 Author: Alan Garny '' Date: Fri Mar 10 16:09:27 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 9803de65348d728886497b6f327194894f54a007 Author: Alan Garny '' Date: Fri Mar 10 13:33:07 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit fbf5aa5491eba31b446722f8ef8bbd6219c8ef0d Author: Alan Garny '' Date: Fri Mar 10 09:18:51 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 4785105f32551b5fa1d3c4d9a5004e11ee38513e Author: Alan Garny '' Date: Fri Mar 10 09:17:25 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 142dfbccbce21d698eaf684ddbbb00efbda44119 Author: Alan Garny '' Date: Fri Mar 10 09:13:26 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 1dc7a88ee5a666f9d30cbc24d29599f62e06130e Author: David Brooks '' Date: Fri Mar 10 10:24:21 2017 +1300 Ensure other plugins can find and use the Python installed into OpenCOR '(#1085).' commit a54199fc91667b298d491022753c047210fb77f6 Merge: f728fbd8b 6af69acb9 Author: David Brooks '' Date: Fri Mar 10 11:14:38 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit c744a4b00b854e405d05f0e2301f2e44788879a0 Author: Alan Garny '' Date: Thu Mar 9 16:37:12 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit a4ac851c1aba7ea01f12aeea7e6fab383b05fbbf Author: Alan Garny '' Date: Thu Mar 9 15:54:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit ee4a2f3801216ce62f05b9fd6c192ed8d3db5920 Author: Alan Garny '' Date: Thu Mar 9 14:17:15 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 39588d909b7fafc18a1ef36256e835c9e0e63141 Author: Alan Garny '' Date: Thu Mar 9 13:44:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit d266839a1bb2af232f118bc7a5daf9ab1e042dcf Merge: e68c0f7e0 6af69acb9 Author: Alan Garny '' Date: Thu Mar 9 11:43:55 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 6af69acb91259181bf97df6690f8086c83b1ecd0 Author: Alan Garny '' Date: Thu Mar 9 11:43:14 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit e68c0f7e04c74159b8e6180fa08550436a786d73 Author: Alan Garny '' Date: Thu Mar 9 10:40:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit f87ec3e703e727eb01943354908c5a8645c83753 Merge: a27ef9024 f100caac7 Author: Alan Garny '' Date: Wed Mar 8 16:22:29 2017 +0100 Merge branch ''\''master'\''' into issue15. commit f100caac75ed60ca4684bbaee613ffe29af04f45 Author: Alan Garny '' Date: Wed Mar 8 16:22:07 2017 +0100 Slight update to our Downloads page '[ci' 'skip].' commit 3b15b47d316b0eebf837306f6b16046c21d3026a Author: Alan Garny '' Date: Wed Mar 8 16:19:30 2017 +0100 CellML Text view: now ignore '`documentation`' elements rather than consider them as unknown '(and' therefore ''\''fail'\'')' '(closes' '#1245).' commit 90c62af1c176d30ed60ea481d7e3d94b3a658f75 Author: Alan Garny '' Date: Wed Mar 8 16:18:27 2017 +0100 Some minor cleaning up. commit ac670ed9e65be76125caf0bdf1eba01b0c9f652e Author: Alan Garny '' Date: Wed Mar 8 16:16:44 2017 +0100 Some minor cleaning up. commit f728fbd8b9cf8a069c2f48c4466b7cbcdb3a1220 Author: David Brooks '' Date: Wed Mar 8 10:16:10 2017 +1300 New OS/X Python binaries with Jupyter dependencies '(#1085).' commit a27ef9024453c62a6df4f3e957f76614198eb285 Merge: 3a4835918 b43793fc4 Author: Alan Garny '' Date: Tue Mar 7 19:42:19 2017 +0100 Merge branch ''\''master'\''' into issue15. commit b43793fc4fd511d0ecf6ef6e48cfdfe7758252ff Author: Alan Garny '' Date: Tue Mar 7 19:38:42 2017 +0100 Slight updates to our Downloads pages '[ci' 'skip].' commit b4cfd91dbbf37b1b8f3b3b27c85b357f19b1ec9a Author: Alan Garny '' Date: Tue Mar 7 19:32:29 2017 +0100 Linux deployment: added some libraries for OpenCOR to work on Fedora '(closes' '#1244).' commit 1616cbfe84e08dd481e927d86970de35f1fe6052 Author: Alan Garny '' Date: Tue Mar 7 19:31:21 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit bbf6e59ec2792d83d2060f57b3ef55393cdac9ed Author: Alan Garny '' Date: Tue Mar 7 18:36:25 2017 +0100 PMR window: prevented exposure files from being retrieved '(and' 'listed)' twice '(closes' '#1243).' commit 6f6fe3f635eabf821f4beaf42dfd1a35aa6a363d Author: Alan Garny '' Date: Tue Mar 7 17:45:51 2017 +0100 Some minor cleaning up. commit 8793e25469e908dd5a248582994e2665d4f5dea4 Author: Alan Garny '' Date: Tue Mar 7 17:40:43 2017 +0100 Some minor cleaning up. commit 8f5d9b44a192d91d15babc7c5483e66b628f51bf Author: Alan Garny '' Date: Tue Mar 7 16:42:19 2017 +0100 PMR window: updated the context menu '(to' be more in line with that of our PMR Workspaces 'window).' commit 3a4835918392cfd88bdf0d0d3ce02ab6715ed6a9 Author: Alan Garny '' Date: Mon Mar 6 17:19:37 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit f82907b477504ab6607c02ec703ee63860b43807 Author: Alan Garny '' Date: Mon Mar 6 17:11:38 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit a08b1b2e8b53215173eb95ef3cd6320ab7763680 Author: Alan Garny '' Date: Mon Mar 6 16:57:34 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 8ea59094738689a52148934dce8f3143a09d10a2 Merge: bce685884 b8f3eaae4 Author: Alan Garny '' Date: Mon Mar 6 09:23:01 2017 +0100 Merge branch ''\''master'\''' into issue15. commit b8f3eaae445f0a2d1ea789a9b0245fec5624b2db Author: Alan Garny '' Date: Sat Mar 4 11:19:02 2017 +0100 New snapshot. commit 343221380abd3a39e514d41e19a7935c7e9eaaf9 Author: Alan Garny '' Date: Sat Mar 4 10:41:23 2017 +0100 Slight updates to our Downloads pages '[ci' 'skip].' commit 6217da29f50a816a346dc378051afc7fc7cdde8b Author: Alan Garny '' Date: Sat Mar 4 10:34:17 2017 +0100 PMR Workspaces window: fixed a crash that used to occur when expanding a workspace by clicking on its arrow '(">")' when nothing else was selected '(closes' '#1242).' commit 85e74c8af8bc4019dea0b12af680f36f391300c6 Author: Alan Garny '' Date: Sat Mar 4 10:27:37 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit b0ed419915ddd6d4a782f34a6ab838456fbd7693 Author: Alan Garny '' Date: Sat Mar 4 10:08:47 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit e36737ae324fd36b3a7e149a326c2b412b197872 Author: Alan Garny '' Date: Fri Mar 3 23:55:34 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 5552cc0e4532f700dce100294bfee5470473c916 Author: Alan Garny '' Date: Fri Mar 3 22:22:32 2017 +0100 New snapshot. commit bce685884a99c935ffd23c81f1d57c8487af7b3e Merge: b8047b7e8 1ab13f098 Author: Alan Garny '' Date: Fri Mar 3 22:17:15 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 1ab13f098f04efa6b06fc4af1125d22ed3acfbdd Merge: 63b661788 ccf20ea04 Author: Alan Garny '' Date: Fri Mar 3 22:16:43 2017 +0100 libgit2: oops, to define '`bool`' on Windows with C++ is clearly not a good 'idea!' commit ccf20ea04c065b2c8595f8041c64b08f8f06d5ed Author: Alan Garny '' Date: Fri Mar 3 21:33:50 2017 +0100 Oops, to define '`bool`' on Windows with C++ is clearly not a good 'idea!' commit 63b6617880acc9296d440e7f356fbc74b61e9151 Merge: 3cdf90fe7 93ab61518 Author: Alan Garny '' Date: Fri Mar 3 21:28:35 2017 +0100 PMR-based windows: made it obvious which PMR site is being used '(closes' '#1239).' commit ee1434b0e47d38b6e68eeccacdbac7084c1a6e9c Author: Alan Garny '' Date: Fri Mar 3 21:26:37 2017 +0100 Oops, to define '`bool`' on Windows with C++ is clearly not a good 'idea!' commit 3cdf90fe78a1ed8deb8d834a3c29ce615ff1a10f Author: Alan Garny '' Date: Fri Mar 3 21:01:54 2017 +0100 Slight update to our Downloads page '[ci' 'skip].' commit 93ab615187b2b19a2640fbb16645707b46ea6b2b Author: Alan Garny '' Date: Fri Mar 3 20:58:10 2017 +0100 PMR-based windows: some work on making it obvious which PMR site is being used '(#1239).' commit 5ffc90d93f459ca727d5ea4d564ba795ae877e2f Author: Alan Garny '' Date: Fri Mar 3 20:39:34 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit ef292b011ede6632856d74b6aaa6fdd9d293f578 Merge: e17ae8175 acaf991f6 Author: Alan Garny '' Date: Fri Mar 3 20:06:53 2017 +0100 PMR Workspaces window: can now create a workspace from a non-empty '(and' 'non-Git)' folder '(closes' '#1237).' commit acaf991f670a14c1d139a508691967ca1fdcb790 Author: Alan Garny '' Date: Fri Mar 3 19:28:19 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit b8047b7e809bcb18f42b441d5c2bbd47cbc79009 Merge: d51c66a27 e17ae8175 Author: Alan Garny '' Date: Fri Mar 3 19:05:35 2017 +0100 Merge branch ''\''master'\''' into issue15. commit d51c66a277e4b3acf82b5e70c5c78236befade2d Author: Alan Garny '' Date: Fri Mar 3 19:05:05 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 462b0654236adba809508092b12219a696b00caa Author: Alan Garny '' Date: Fri Mar 3 18:57:49 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit b595daec75a34e3722f421371c4a19f76bdf2079 Author: Alan Garny '' Date: Fri Mar 3 18:57:08 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit df6a2c32b8351cf4d10692bbd1fa43baa454df05 Author: Alan Garny '' Date: Fri Mar 3 17:54:33 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit 01a0f032f9907614f6d26af14980d2cb469db3e8 Author: Alan Garny '' Date: Fri Mar 3 17:37:46 2017 +0100 Some minor cleaning up. commit 9b40c872cc4e1b6d5461210d4c6e2295b6c40be2 Author: Alan Garny '' Date: Fri Mar 3 17:27:55 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit 5d37472fcd606f5fea0e662d6ba4f45aa95dc35e Author: Alan Garny '' Date: Fri Mar 3 16:40:11 2017 +0100 PMR Workspaces window: some work on creating a workspace from a non-empty '(and' 'non-Git)' folder '(#1237).' commit e17ae8175341d2b38faf98d19fbfce7ab224daf7 Author: Alan Garny '' Date: Fri Mar 3 15:32:22 2017 +0100 PMR Workspaces window: fixed a small problem with synchronising potentially resulting in a segmentation fault on Linux '(closes' '#1236).' commit e1a819cb9388f1abc0b74d5b7865709c8a974b8a Author: Alan Garny '' Date: Fri Mar 3 15:22:53 2017 +0100 Some minor cleaning up. commit 842d5cd14f9f7e7d029bdbccd9c182dec4633334 Author: Alan Garny '' Date: Fri Mar 3 13:37:36 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' Mainly to keep track of what has been $'tried\342\200\246' commit ca138c5f09240f14255daf25459d4db3c5521e30 Author: David Brooks '' Date: Fri Mar 3 15:22:53 2017 +1300 Cleanly shutdown our Jupyter kernel '(#1085).' commit ffada0ab1c7bd5f389e3c84600562a49fc911563 Author: Alan Garny '' Date: Thu Mar 2 17:53:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 007c46bb9b66a40eb5de99bc7e63d126c501da8f Author: Alan Garny '' Date: Thu Mar 2 17:44:34 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 332a3c58c58181c252dd2f1dcd2ed262f9e97585 Author: Alan Garny '' Date: Thu Mar 2 15:50:42 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 70d44e54a559c9513827946ec61c3ea2df576543 Author: Alan Garny '' Date: Thu Mar 2 15:38:13 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit d9e90742c7cf0063ef3af26fa8beb6dd45c02a87 Author: Alan Garny '' Date: Thu Mar 2 15:05:54 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 9cec2ba6b01f61b399eede3b3fec06d0f8b15712 Author: Alan Garny '' Date: Thu Mar 2 14:59:01 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 3c368446084c1394946b4cb3217205d69e20b8ce Author: Alan Garny '' Date: Thu Mar 2 14:57:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit a1a6e33125f152135ac1819a575e724c8872ea5f Author: Alan Garny '' Date: Thu Mar 2 13:47:03 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 1524263fe6d82d3b470f79660dfbd304ce0e5ecc Author: Alan Garny '' Date: Thu Mar 2 13:12:07 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit a388fe88bd1c0a757b173eacbd914f88e46af88c Author: Alan Garny '' Date: Thu Mar 2 11:39:44 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit ccb3184359fe7e18f346f752e871e799906b6422 Author: Alan Garny '' Date: Thu Mar 2 11:30:56 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 4dd89b4437245b12a29e69e811de2df04d23bc56 Author: Alan Garny '' Date: Thu Mar 2 11:17:55 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit eb72274c7fcf9edaec651f537bf2d3fb689d59d3 Author: Alan Garny '' Date: Thu Mar 2 10:44:45 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 32daa04cb369026138ea42279cce18ca7414127a Author: Alan Garny '' Date: Thu Mar 2 10:41:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 4da27feddd911210e29fb7f2fff4db22509237fd Author: Alan Garny '' Date: Thu Mar 2 10:35:19 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 2cba9d2c93b49ea9c7b06dfa50f6323a189c94b7 Author: Alan Garny '' Date: Thu Mar 2 10:12:59 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 5be305750f6f3446656d0a471cc48bcb87c634f8 Merge: 35b2de478 daf8b6943 Author: Alan Garny '' Date: Thu Mar 2 10:09:35 2017 +0100 Merge branch ''\''master'\''' into issue15. commit daf8b6943918af2c90dfa3983eb48bcc98e24ec4 Author: Alan Garny '' Date: Thu Mar 2 10:09:23 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 35b2de478d3248a3f66897da435331833aa83eca Author: Alan Garny '' Date: Thu Mar 2 10:08:52 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 26c0e0d090c268844aab48f42838abf8187a83a1 Author: Alan Garny '' Date: Wed Mar 1 20:33:08 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 9be0545e6ac58fe1ed9c4fbbe77210305ab1525d Author: Alan Garny '' Date: Wed Mar 1 20:05:41 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 54adb01e8399dcdb4e7bd538489fd81afd86615d Merge: 5bf86666b 521cbf9f1 Author: Alan Garny '' Date: Wed Mar 1 19:50:37 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 521cbf9f1581e586ca57dd5bc1915d8df595590b Author: Alan Garny '' Date: Wed Mar 1 19:45:59 2017 +0100 PMR Workspaces window: have a default size for our authentication dialog '[ci' 'skip].' commit 4ba0802c3b32e58d011be34dca515fd0b0b21f97 Author: Alan Garny '' Date: Wed Mar 1 19:29:37 2017 +0100 Oops, I went a bit too far in commit '05acd81!' commit 05acd81325af7adf77f0762c9fb974203f6553c6 Author: Alan Garny '' Date: Wed Mar 1 19:17:42 2017 +0100 Some minor cleaning up. commit 5bf86666b49c12a1a9fa527d8d0f7776a95bdefb Author: Alan Garny '' Date: Wed Mar 1 18:54:29 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 470c11d072b030dad98a47e88b6e1e8f485a2e73 Merge: 6facd130d 975a8fad8 Author: Alan Garny '' Date: Wed Mar 1 18:28:02 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 975a8fad858e919a4b154593764792df77aa7ec0 Author: Alan Garny '' Date: Wed Mar 1 18:27:48 2017 +0100 Slight updates to our Downloads pages '[ci' 'skip].' commit 6facd130d1b9bcb1d41b13c2170f7b8ccb1929fb Merge: b3388b57b 1e5385e85 Author: Alan Garny '' Date: Wed Mar 1 18:18:46 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 1e5385e857b0b4b37523f2cc539c4b92ce084901 Author: Alan Garny '' Date: Wed Mar 1 18:15:12 2017 +0100 Fixed a small regression issue '(that' got introduced between the 2017-02-10 and 2017-02-24 'snapshots)' that prevented the application icon from being set on Linux '(closes' '#1235).' commit 5fb62b56951b4055c2d77c314131227af88096c2 Author: Alan Garny '' Date: Wed Mar 1 17:33:17 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 2495fa6ebee204d734ef8b19b0e8cbab602fc18c Author: Alan Garny '' Date: Wed Mar 1 17:19:56 2017 +0100 LLVM: found a way around the use of LLVM_DEFINITIONS for LLVM-related plugins. commit 25ca9ff885fbab61a11d11dcabd664a02828e37d Author: Alan Garny '' Date: Wed Mar 1 16:12:30 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 762389f27de30e5415b148d66d29926dc5054d52 Author: Alan Garny '' Date: Wed Mar 1 13:38:53 2017 +0100 Qwt: found a way around the use of QWT_DEFINITIONS for Qwt-related plugins. commit 5e6cbe4cb29c2dec85358ff1a2efee69eb215718 Author: Alan Garny '' Date: Wed Mar 1 13:28:01 2017 +0100 Some minor cleaning up. commit 29bdd4d3453907253213e47a7131dba47392ffda Author: Alan Garny '' Date: Wed Mar 1 11:19:47 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit b3388b57b5fdbfdc90c7d639212bc213c4c01e4b Merge: 9f3698ca9 464801a87 Author: Alan Garny '' Date: Tue Feb 28 20:22:42 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 464801a8759026d66cc982837fb0a0c0bb3117a3 Author: Alan Garny '' Date: Tue Feb 28 20:22:00 2017 +0100 Some minor cleaning up. commit 9f3698ca93c5dbaa08d0b06f5239c375bfc94d3d Merge: 665381e20 a14d9746a Author: Alan Garny '' Date: Tue Feb 28 20:03:03 2017 +0100 Merge branch ''\''master'\''' into issue15. commit a14d9746a4350364620a2904be8fb0ad0904db93 Author: Alan Garny '' Date: Tue Feb 28 20:02:47 2017 +0100 Make sure that all of our windows have a minimum suggested default size '[ci' 'skip].' Commit 2515a964c759df2ef9c88250d67f71e9bd7d6051 was doing at too high a level. Instead, we should do it in the widgets plugins '(e.g.' WebViewerWidget rather than HelpWindow or 'WebBrowserWindow).' commit 665381e20644f9dc8802d5bcd7a7fdc55e42cd3f Merge: e731feb6e 3874bd772 Author: Alan Garny '' Date: Tue Feb 28 19:45:39 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 3874bd7724889966e648fffe87b3c7e6eb37a01b Author: Alan Garny '' Date: Tue Feb 28 19:45:21 2017 +0100 Some minor cleaning up. commit e731feb6e7d54d7d978688a93b4afa5f30735098 Author: Alan Garny '' Date: Tue Feb 28 18:02:06 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit f05a93fbe1db11ff1f94d3a634bd7d6155a206e2 Author: Alan Garny '' Date: Tue Feb 28 17:14:53 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 90183abf7f7d93725434a3f96d122ecee5b9cb8a Author: Alan Garny '' Date: Tue Feb 28 16:26:13 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit e2369284c8a465bd4d3fee9308e7a5091722d20a Author: Alan Garny '' Date: Tue Feb 28 16:24:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit efa380425493e811fb09e44be1b08e11b1fe9fe8 Merge: 3ee9a3bdb 2515a964c Author: Alan Garny '' Date: Tue Feb 28 14:39:52 2017 +0100 Merge branch ''\''master'\''' into issue15. commit 2515a964c759df2ef9c88250d67f71e9bd7d6051 Author: Alan Garny '' Date: Tue Feb 28 14:39:36 2017 +0100 Make sure that all of our windows have a minimum suggested default size '[ci' 'skip].' commit 3ee9a3bdb54a9e366efd0f2c6269cecc129bb733 Author: Alan Garny '' Date: Tue Feb 28 14:31:11 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit db04f81dbbb3778fbe7d4f98503e539a58b539e2 Author: Alan Garny '' Date: Tue Feb 28 13:51:27 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit eea307b788cbef487cac4403213c16634be4d6d5 Author: Alan Garny '' Date: Tue Feb 28 13:33:09 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit e7d4a8bba4f5e9bf6e9aa6e1fdfb1a027fbe9897 Author: Alan Garny '' Date: Tue Feb 28 10:51:22 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 0a968695522418832b5bec84060d4b6261c358a1 Author: Alan Garny '' Date: Tue Feb 28 10:51:06 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 02cd13818a5aa198d60878db4ae8a90e223696db Merge: 7cae0a59a b42e7e4ca Author: David Brooks '' Date: Tue Feb 28 19:18:02 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 7cae0a59ab63f7aa8dacb2792480e9fb723ef1a0 Author: David Brooks '' Date: Tue Feb 28 19:16:22 2017 +1300 Set the location of our DLLs under Windows so that they are found '(#1085).' commit 0e02f9fb32849a0d9f73e0954ec7cdc0ad72d0df Author: David Brooks '' Date: Tue Feb 28 19:15:36 2017 +1300 Run a Python module using '`OpenCOR' -c 'Python::MODULE_NAME`' '(#1085).' commit e49eaff0f2595b9738221b7f084129c16597b7ef Author: David Brooks '' Date: Tue Feb 28 19:11:27 2017 +1300 Provide a user with scripts to install Python packages, etc. and remove '`pip`' as a plugin command '(#1085).' If we run pip as '`OpenCOR' -c 'Python::pip`' then pip tries to run OpenCOR as a sub-process rather than the Python that started pip. commit 15c451817024108bf644734d5e6a6c63767497d6 Author: David Brooks '' Date: Tue Feb 28 19:01:25 2017 +1300 Bundle SQLite3 shared library with Python '(#1085).' commit 1e16ec6d94b151748e51362fe82c5688171c8653 Author: David Brooks '' Date: Tue Feb 28 18:54:15 2017 +1300 Install and use SQLite3 library under Windows '(#1085).' commit a0750cb8e46a6ffb83e929d429eccf291a64afc5 Author: David Brooks '' Date: Tue Feb 28 18:47:42 2017 +1300 Add dependency rules for copying OpenCOR.com in a 'Windows'\''' build '#1106).' commit eefa9e79c00b761cda464faf4083fb57209bf6f4 Author: Alan Garny '' Date: Mon Feb 27 18:10:20 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 7af8cd29dac5cbc4bb472f86b7c85e75805f777d Author: Alan Garny '' Date: Mon Feb 27 15:57:17 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 95f9ac5bfd3e90991346bf67c370646dcbbe59a8 Merge: af1f91454 b42e7e4ca Author: Alan Garny '' Date: Mon Feb 27 15:56:28 2017 +0100 Merge branch ''\''master'\''' into issue15. commit b42e7e4cabc7c0715eab64495409be6c334c273a Author: Alan Garny '' Date: Mon Feb 27 15:56:11 2017 +0100 Cleaned up some of our reStructured files '[ci' 'skip].' Indeed, to render them using http://rst.ninjs.org/ gave some errors even though they were rendering fine in GitHub. commit af1f91454746b7bcb9cac1a0fdfaa6b40b2f0554 Author: Alan Garny '' Date: Mon Feb 27 15:43:11 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit 05da295e6eba745e8233e9f516aa37104796cbf1 Author: Alan Garny '' Date: Mon Feb 27 15:22:27 2017 +0100 Some work on adding support for OpenCMISS-Zinc '(#15).' commit d1c2d249088e64bc625bce8bbb16d01d820973d6 Author: Alan Garny '' Date: Mon Feb 27 14:10:34 2017 +0100 diff-match-patch: some minor cleaning up and explanations '[ci' 'skip].' commit 9ea8351ba0ef773081cd840a5f288372685b0b09 Author: Alan Garny '' Date: Mon Feb 27 11:45:30 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 9706813d3eca0ca65dadb5e8d86b144e31938b24 Author: David Brooks '' Date: Mon Feb 27 15:50:40 2017 +1300 Remove debugging '(#1085).' commit 4ae4eec20d5414902f091c16d768ddad15e57816 Author: David Brooks '' Date: Mon Feb 27 15:50:11 2017 +1300 Tidy up EventLoopInterface code '(#1085).' commit c132ff3b36cde4890e8aca7dadfa841642d1ca98 Author: David Brooks '' Date: Mon Feb 27 15:47:57 2017 +1300 'Window'\''s' CLI build needs to know about EventLoopInterface '(#1085).' commit b72edc54e66f19c45969dda1bc6715dd1e83fb38 Merge: 8c00912a8 5c684b0f2 Author: David Brooks '' Date: Sun Feb 26 09:57:45 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit 5c684b0f227ebdd00d0347b6dd67088ac40f71e0 Author: David Brooks '' Date: Sun Feb 26 09:57:12 2017 +1300 Use a custom target when copying external binaries in CMake '(#1106).' commit 8c00912a8b637f984441e018221fab429242505c Author: David Brooks '' Date: Sun Feb 26 09:55:27 2017 +1300 Update external package archives for linux '(#1106).' commit d8e23309daf1400a2d6a0c42f7bb7d46a155dfcc Merge: 9c5d4c88e 5e1bdebf9 Author: David Brooks '' Date: Sat Feb 25 17:36:29 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit 5e1bdebf911770a46ccd08cdcfb9a30552066588 Author: David Brooks '' Date: Sat Feb 25 17:35:33 2017 +1300 External libraries 'weren'\''t' being linked to targets under Linux... '(#1106).' commit c1b204478f3dc0fb2aa151c369873cc79b3125cd Author: David Brooks '' Date: Fri Feb 24 21:13:20 2017 +1300 Extend '`COPY_FILE_TO_BUILD_DIR`' to optionally specify if copy should be before the target is built '(#1106).' commit e1d6f5cb63cf2a97c288dc14ec8ddf5e54d2cbdf Author: Alan Garny '' Date: Fri Feb 24 18:54:43 2017 +0100 PMR Workspaces window: slight improvement to the way things get resized in our synchronisation dialog '[ci' 'skip].' commit 69b5ed7da0c4ac9bde6555cd740a7b956dd146bc Author: Alan Garny '' Date: Fri Feb 24 18:03:46 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 697310190e8e81e99872e376a3cdd98970fe87d9 Author: Alan Garny '' Date: Fri Feb 24 16:16:37 2017 +0100 New snapshot. commit b5893a355deb054e82b79222d3b2ce5ebb48902a Author: Alan Garny '' Date: Fri Feb 24 16:15:11 2017 +0100 PMR Workspaces window: slight improvement to our rendering of diffs '[ci' 'skip].' commit 100066e6b86b432697153b5622ae8e436ee9b5b8 Author: Alan Garny '' Date: Fri Feb 24 15:08:06 2017 +0100 PMR Workspaces window: slight improvements to our colour scheme for the diff '[ci' 'skip].' commit f49559847a7536fa74f52c14738e2c11b09efe4e Author: Alan Garny '' Date: Fri Feb 24 14:26:50 2017 +0100 PMR Workspaces window: make sure that the CellML Text based diff works fine on Windows '[ci' 'skip].' commit 295dd3d7d2c9d4b8d74559bc28638a8eb57bb059 Author: Alan Garny '' Date: Fri Feb 24 14:15:55 2017 +0100 Revert '"New' 'snapshot."' This reverts commit ebac51836d383e7eb35b07154eb48cde1214ce9f. commit ebac51836d383e7eb35b07154eb48cde1214ce9f Author: Alan Garny '' Date: Fri Feb 24 11:32:20 2017 +0100 New snapshot. commit cde07670d92ade8e8dc7cc5cc776b4b971718707 Merge: 4dac8a5a3 35b60bbb9 Author: Alan Garny '' Date: Fri Feb 24 11:05:53 2017 +0100 WebViewer widget based plugins: fixed a small $'\342\200\230regression\342\200\231' issue with the default context menu always being shown '(closes' '#1233).' commit 4dac8a5a37ee207473bf55ab3082eff61e7c6b2c Author: Alan Garny '' Date: Fri Feb 24 10:55:15 2017 +0100 PMR Workspaces window: use a better colour scheme for the diff '[ci' 'skip].' commit 35b60bbb9c695ab235267c8ba54539392058a324 Author: Alan Garny '' Date: Fri Feb 24 10:33:47 2017 +0100 WebViewer widget based plugins: fixed a small $'\342\200\230regression\342\200\231' issue with the default context menu always being shown '(closes' '#1233).' commit 5e9a9d5815483bc0ffd957bd5472aebb541ba8b6 Author: Alan Garny '' Date: Fri Feb 24 09:19:25 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 9c5d4c88e441b0c59fa71e470d7d25f0caf9af3f Author: David Brooks '' Date: Fri Feb 24 21:15:05 2017 +1300 Find SQLite3 under Linux '(#1085),' commit d5ef9ae340d82912d5309eaf3bc57543fa656f0e Author: David Brooks '' Date: Fri Feb 24 21:13:20 2017 +1300 Extend '`COPY_FILE_TO_BUILD_DIR`' to optionally specify if copy should be before the target is built '(#1106).' commit 09c64041a3f5f95dacf661cd162373894ef2d71c Author: David Brooks '' Date: Fri Feb 24 16:25:24 2017 +1300 Use new name for Python runtime library directory '(#1085).' commit 7d9af03fd8d1ddeac35d6e0cb2322670fa761c26 Merge: 7a93154a1 ad4536c30 Author: David Brooks '' Date: Fri Feb 24 16:10:32 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit ad4536c3081ef95e4ebd3b5828601921a599ed0f Merge: 3dee814ef 21c2308e6 Author: David Brooks '' Date: Fri Feb 24 16:02:53 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 3dee814ef916d37000f46a88e5fa90c298c09cd4 Author: David Brooks '' Date: Fri Feb 24 16:01:18 2017 +1300 Build latest version under MacOS and Linux '(#1085).' commit d22ededfa6e731a0b7f7d30e2d5fa356506e1c65 Author: David Brooks '' Date: Fri Feb 24 16:00:42 2017 +1300 Copy and fixup external binaries '*before*' plugin build and link to the destination copy '(#1106).' commit bcae1ca0bafb0114c2e5a3cc8521d89f6b8c1e9d Author: David Brooks '' Date: Fri Feb 24 15:58:40 2017 +1300 Test was reversed in commit 60dbe7b... '(#1085).' commit 250fa36887dda264146b83690ef6e0c7f37217ed Author: David Brooks '' Date: Fri Feb 24 15:57:45 2017 +1300 OpenSSL is now in a plugin so no need to deploy system version '(#1101).' commit 7832a95e3f67f407e3c21e1959a6ea60073a64d2 Author: David Brooks '' Date: Fri Feb 24 10:19:20 2017 +1300 Fix Linux build of Python plugin '(#1085).' commit 7a93154a10712e3720818f33b5bc2368abb31d62 Merge: 77fbb02cc 611a085b9 Author: David Brooks '' Date: Fri Feb 24 09:04:58 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit 611a085b9b4d2c1dd8e8d6d998ed33cdad4207f9 Author: David Brooks '' Date: Fri Feb 24 08:57:39 2017 +1300 We were installing numpy twice... '(#1085).' commit 77fbb02cc571d5b71b0d62798d37c058b5825784 Author: David Brooks '' Date: Fri Feb 24 08:51:06 2017 +1300 Update README '(#1085).' commit 042bfb2be00c60da95d0da8bc1b8ecd446ddae3a Author: David Brooks '' Date: Fri Feb 24 08:49:10 2017 +1300 A Jupyter kernel specification for OpenCOR '(#1085).' commit f72ffe1a632008f5582093626f56b8a688d76da9 Author: David Brooks '' Date: Fri Feb 24 08:48:37 2017 +1300 Patch IPython kernel to work with PythonQt '(#1085).' commit edcc47a18d00be211b6b488ff0bc43b322726f21 Author: David Brooks '' Date: Fri Feb 24 08:27:06 2017 +1300 Upgrade numpy to version 1.12.0 '(#1085).' commit f8f57f922f55f318a0e70482b7d43ab7e0c7650d Author: David Brooks '' Date: Fri Feb 24 08:26:35 2017 +1300 Get Python plugin running under Windows '(#1085).' Also tidy up CMake code. commit 21c2308e620df858d64823ecf28df08310d94646 Author: Alan Garny '' Date: Thu Feb 23 19:04:56 2017 +0100 CellML Text view: fixed a small problem with trying to comment out an empty line moving the caret to the next line '(closes' '#1232).' commit b060463a4fccb2760c9e33582be6284487ab2479 Merge: 81e87713f 5e4614577 Author: Alan Garny '' Date: Thu Feb 23 18:43:03 2017 +0100 PMR Workspaces window: now offer a way to see the differences in the files that are to be synchronised with PMR '(closes' '#1229).' commit 5e4614577667bb5afe87c197fef90b7ae939adb5 Author: Alan Garny '' Date: Thu Feb 23 18:07:24 2017 +0100 Travis CI: give up on macOS builds for now. Right now, their macOS has more than 1,000 'jobs!' This is ridiculous. commit e69f2c3b4d19a95ad32a09b8fa275ad7d3c16307 Author: Alan Garny '' Date: Thu Feb 23 17:59:16 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit f036c334229402b28aefbbbe86a581d2386c5abf Author: Alan Garny '' Date: Thu Feb 23 17:44:48 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 0c85e9f231940fbd4c94c6b17c7e3fa0999232d2 Author: Alan Garny '' Date: Thu Feb 23 17:42:39 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit e73c75961e54c6c22510e95cd56a6bcd165fc9af Author: Alan Garny '' Date: Thu Feb 23 16:58:22 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 1b6282fdd76c29b3b76068fd32ee5d52424ec727 Author: Alan Garny '' Date: Thu Feb 23 16:55:43 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 35c1c9a601a45e314bd46396ab439032431e61de Author: Alan Garny '' Date: Thu Feb 23 16:34:50 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 2a18fea27d4a5fc211a91a4bf239fd40b960d789 Author: Alan Garny '' Date: Thu Feb 23 15:32:31 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit fc93a52f26c2ba26fd5c1b1a810fa626453c073a Author: Alan Garny '' Date: Thu Feb 23 14:55:51 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 4880159edbf936fc460dc1cae21bb97247595a96 Merge: 70be67cce 81e87713f Author: Alan Garny '' Date: Thu Feb 23 12:39:55 2017 +0100 Merge branch ''\''master'\''' into issue1229. commit 81e87713f33fda1d9fdeeb2b003c0fe11e14f103 Author: Alan Garny '' Date: Thu Feb 23 12:34:53 2017 +0100 Slight update to our developer documentation '[ci' 'skip].' commit 70be67cce16c4e4f97acf7ee4ca98d1c0f088d62 Author: Alan Garny '' Date: Thu Feb 23 11:48:40 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 0682a2d97962149a03dee96531ff19ed26672022 Author: Alan Garny '' Date: Thu Feb 23 11:08:34 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 7b340c6c309ebb57bd3302519826aab7d0207cdb Merge: 5c1f2e9c2 d08457b97 Author: Alan Garny '' Date: Thu Feb 23 10:15:13 2017 +0100 Merge branch ''\''master'\''' into issue1229. commit d08457b97c04969fd37cc00ddf3ea36951cfc055 Author: Alan Garny '' Date: Thu Feb 23 10:06:12 2017 +0100 CellML Text view: unknown elements '(e.g.' '`int`)' now result in an error during conversion to the CellML Text format '(closes' '#1230).' commit fd8ef4b4360f52ac210e2879ed0f699b6ec7e34a Author: Alan Garny '' Date: Thu Feb 23 10:01:28 2017 +0100 CellML Text view: some work towards getting unknown elements '(e.g.' '`int`)' to result in an error '(#1230).' commit 60dbe7bf378c64e9a7596cbd9d23ed84be3fbbb9 Author: David Brooks '' Date: Thu Feb 23 15:34:47 2017 +1300 Newly built external project files 'weren'\''t' always copied '(#1106).' Only do a direct copy if the file exists and the plugin 'doesn'\''t' depend on any targets. commit 12e0ccbe99ea987a39a4fcbac02e03b2b7e6b89f Author: David Brooks '' Date: Thu Feb 23 14:04:10 2017 +1300 Update Windows builds of external packages '(#1106).' commit bc4a573cab89cbef5ea5f2afb4b21c8320215b70 Author: David Brooks '' Date: Thu Feb 23 13:56:43 2017 +1300 Tidy up CMake script '(#1106).' commit b0a9dec20a6f39e124ce5184b22108547daeb4c1 Author: David Brooks '' Date: Thu Feb 23 13:52:47 2017 +1300 Use correct OpenSSL library names in a Windows debug build '(#1101).' commit 5c1f2e9c2f85f46f896dad1d62d59bc2934f162c Author: Alan Garny '' Date: Wed Feb 22 19:37:00 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 1c43360a3d8651d34033c232e4eab87555d3cd7e Author: Alan Garny '' Date: Wed Feb 22 18:57:55 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 27bc8b1e888f1bfdaf0653db7b7ae463abd8209f Author: Alan Garny '' Date: Wed Feb 22 18:54:13 2017 +0100 Some minor cleaning up. commit acaa7801266970dc3f56a4bf1159cb61bfefc4ef Author: Alan Garny '' Date: Wed Feb 22 18:15:10 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit deb0c9608caf42b46498e03da461200969e9654f Author: Alan Garny '' Date: Wed Feb 22 18:04:07 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 9136ce0f151fcb7892d7673d923d14861b62180a Author: Alan Garny '' Date: Wed Feb 22 17:40:43 2017 +0100 Some minor cleaning up. commit 9b3a3704fbee13b509317d895e8010c108a72f04 Author: Alan Garny '' Date: Wed Feb 22 16:45:36 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit de97d0b7a8dadfbaaaa93d2699e21374de022eff Author: Alan Garny '' Date: Wed Feb 22 15:42:00 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit e8e37e4bb65396dd8189cf04534ff2c3903c8e96 Author: Alan Garny '' Date: Wed Feb 22 15:25:54 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 7d6c9e3c2b04aa87f71c0812b7e7c2c6a07b169d Author: Alan Garny '' Date: Wed Feb 22 14:42:31 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 63b789c9607c6ca2b99a0e7367caa9964cc4c751 Author: Alan Garny '' Date: Wed Feb 22 13:52:06 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit c3d17f07aef5053eace2f8d09fac54ea3b2498a3 Author: Alan Garny '' Date: Wed Feb 22 11:51:22 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 66aa1c37554432eb76720ca8048a138a491f3d50 Author: Alan Garny '' Date: Wed Feb 22 11:18:33 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit dae2a8fb6fc76628542840d75faa2472aa22f18a Author: Alan Garny '' Date: Wed Feb 22 10:44:36 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 15c38420f4398379b1e188e8aa104b590e2200ba Author: Alan Garny '' Date: Wed Feb 22 10:27:08 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 47a42c5d8362388de4a97b55c3c7ea438ba27424 Author: Alan Garny '' Date: Wed Feb 22 10:02:48 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit ee782292958109f1169d01b200c9e56fd7154277 Author: Alan Garny '' Date: Tue Feb 21 20:16:42 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 44b2e12c59cc86fa6c1f51ebfd6f1c5242ee98cc Author: Alan Garny '' Date: Tue Feb 21 19:46:21 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 8381b05a276fce1f73de50fb326e7c6d83933e56 Author: Alan Garny '' Date: Tue Feb 21 19:01:35 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 687f85f3b19f6b5c1aa697950d6253481d834e82 Author: Alan Garny '' Date: Tue Feb 21 18:58:09 2017 +0100 PMR Workspaces window: some work on offering a way to see the differences in the files that are to be synchronised with PMR '(#1229).' commit 4a248f4f5e38063ff4ad6081101c1f8f9dc52f50 Author: Alan Garny '' Date: Tue Feb 21 18:56:11 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit e6e8092c0d1565b7f773f01df0d06f3e00ee4bff Author: Alan Garny '' Date: Tue Feb 21 18:25:56 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 468acde3f27d4ddec1a34340e6e826aa462c17b3 Merge: c06659cba 313cc1392 Author: Alan Garny '' Date: Tue Feb 21 11:17:12 2017 +0100 QScintilla: upgraded to version 2.10 '(closes' '#1227).' commit 313cc1392736f29a4881195ce98aa099fbfc3301 Author: Alan Garny '' Date: Tue Feb 21 10:43:13 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit 39455ae949d9a3d6eeb7d43b875c5ab9f0707e11 Author: Alan Garny '' Date: Tue Feb 21 10:41:38 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit db96a8e43a4a04aaeb1fbcf1713b1107469a7b27 Author: Alan Garny '' Date: Tue Feb 21 10:32:39 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit 13618ca384baf96e4603ccb7ac5eb9a7ade6ba7b Author: Alan Garny '' Date: Tue Feb 21 10:19:19 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit ff18d0c09284e4240efe8aeae4f35fde4db71b80 Merge: c98c76540 c06659cba Author: Alan Garny '' Date: Tue Feb 21 08:25:53 2017 +0100 Merge branch ''\''master'\''' into issue1227. commit c98c76540a2967217ef1243ddbff3513fa3049b3 Author: Alan Garny '' Date: Tue Feb 21 08:23:11 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit 1d769e68bdc9c0dd5e441b4aef55a0795754e20e Author: David Brooks '' Date: Tue Feb 21 14:49:50 2017 +1300 Use appropriate quiet option for '`make`' on the different platforms '(#1101).' commit c0797761debbde3ac1ad19286612747f92b1f749 Author: David Brooks '' Date: Tue Feb 21 14:46:17 2017 +1300 Use '`TARGET`' instead of '`DEPENDENCY`' to specify the target when creating a package '(#1106).' commit cc9ff1def254675e9609e1da4a25acfc1bdcdb02 Author: David Brooks '' Date: Tue Feb 21 14:43:10 2017 +1300 Set a 'plugin'\''s' build dependencies as part of ADD_PLUGIN '(#1106).' commit 2e10a97d204bd3171e47466336aedadd64645529 Author: David Brooks '' Date: Tue Feb 21 10:21:20 2017 +1300 Tidy up CMake files '(#1106).' commit 786bd243f2592a085230a64cfb9c089ee98feaa9 Author: David Brooks '' Date: Tue Feb 21 09:25:30 2017 +1300 Windows needs to access wrapped classes '(#1085).' commit c4f9cfdc9884d83eb10caa49534f72df952fa1db Author: David Brooks '' Date: Tue Feb 21 09:24:38 2017 +1300 We need to export wrapped classes for Windows '(#1085).' commit 59485a77cdba36313128c11956d2bdd60e92e2b0 Author: David Brooks '' Date: Tue Feb 21 09:10:11 2017 +1300 Specify base directory for external projects '(1106).' This helps prevent path names becoming too long during 'Windows'\''' builds. commit c06659cba5c4a465a16faaa9662a85a4f52f55cf Merge: c2e2537c4 7aa71de24 Author: Alan Garny '' Date: Mon Feb 20 18:01:44 2017 +0100 PMR Workspaces window '(closes' '#1212' and closes '#1213).' commit 6e8d7023eab5cd358fc96529c484a1d1cb6ab59d Author: Alan Garny '' Date: Mon Feb 20 17:37:44 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit 396a66b25f2d692959b58a3571acafde0d443dc8 Author: Alan Garny '' Date: Mon Feb 20 17:35:20 2017 +0100 QScintilla: some work on upgrading to version 2.10 '(#1227).' commit 7aa71de245eaf26fb53d5fa51ed7b64c0865cdda Author: Alan Garny '' Date: Mon Feb 20 16:58:43 2017 +0100 Travis CI: replaced an '(apparently)' obsolete package with another on Linux. This strange because I had been using that $'\342\200\230obsolete\342\200\231' package for months if not years. Oh $'well\342\200\246' commit 9de53ed35b2f5844f5a505536f361507da97a54e Author: Alan Garny '' Date: Mon Feb 20 16:24:23 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 683924eba066274da5255cfeec9d1187d1bcd0c6 Author: Alan Garny '' Date: Mon Feb 20 16:00:54 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 38d117e32e1e6758886dcc992ca22bbc730b7b74 Author: Alan Garny '' Date: Mon Feb 20 15:55:27 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 475a130347bb9f09e0c0a5288f6479ec4e6d744b Author: Alan Garny '' Date: Mon Feb 20 15:48:06 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 2473e103154e479b23d63b0c891c5ba6e2276565 Author: Alan Garny '' Date: Mon Feb 20 15:00:55 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit c6ab11a48647509e3607e7dfd800dde9107fc97f Author: Alan Garny '' Date: Mon Feb 20 15:00:37 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 66c0977fb629fa2273074703517e52e53638c177 Author: Alan Garny '' Date: Mon Feb 20 14:15:53 2017 +0100 Some minor cleaning up. commit 21c00c106d4448c89694c05ebda00ed471b34bb3 Author: Alan Garny '' Date: Mon Feb 20 13:49:27 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit e7bb750f76397a78d8aa80a9de34f0f75c5aa7d5 Author: Alan Garny '' Date: Mon Feb 20 10:45:23 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit e832f70da7bb177ce89dfac9f45e27130e2e0a86 Author: Alan Garny '' Date: Sun Feb 19 10:30:52 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit 16f946bc9767a8c84eaf6a4724a07cc7708b323a Author: Alan Garny '' Date: Sun Feb 19 10:29:01 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit c4583547de976cb56112e89eba4edc95fd4a0698 Merge: af034849f c2e2537c4 Author: Alan Garny '' Date: Sun Feb 19 10:02:03 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit c2e2537c4b34458d3725dfbc68395d14c7423193 Merge: 00aeea5c1 0dec26922 Author: Alan Garny '' Date: Sat Feb 18 19:53:28 2017 +0100 General: keep track of the position and size of dialogs '(closes' '#1224).' commit af034849fe80c4c8ed9616fff4d53dda581887ca Merge: 8cf1a1472 00aeea5c1 Author: Alan Garny '' Date: Fri Feb 17 20:22:26 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit 0dec269228a21a1d60125ce52f2e8b2f9f66d920 Author: Alan Garny '' Date: Fri Feb 17 20:17:34 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 7a4ae65abc77fd671d3b8d8e447758e5ab67b7a3 Author: Alan Garny '' Date: Fri Feb 17 20:14:25 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 020ef459ca91796c19ef5d0afd7f31542af67343 Author: Alan Garny '' Date: Fri Feb 17 20:09:04 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit c404f760c9d0fbac1765652db175961f1a7d3355 Author: Alan Garny '' Date: Fri Feb 17 19:47:50 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 0d26835486dfed8d8f5ec1bd4780c383ba18e9a8 Author: Alan Garny '' Date: Fri Feb 17 19:35:11 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 2d4a1b36111714411c6dfb94b67852ddd1d346ea Author: Alan Garny '' Date: Fri Feb 17 19:25:41 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit cab3348d6232aab261531efe4fa4ffa7a346145e Author: Alan Garny '' Date: Fri Feb 17 19:25:19 2017 +0100 Some minor cleaning up. commit 5c6eb2e4fbaeab3c1addcae89541144dfeeffb76 Author: Alan Garny '' Date: Fri Feb 17 19:05:25 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 8d8528066d512ca259eb890d97b96e8d50b0cd4c Author: Alan Garny '' Date: Fri Feb 17 18:40:40 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 995c6edfd54c3d82fb32ae9a7d3c5ea73911940c Author: Alan Garny '' Date: Fri Feb 17 18:31:27 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 63051641bed5e0b5361a7057e6f900bd2376435a Author: Alan Garny '' Date: Fri Feb 17 18:26:03 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 97340dd4c68229160cfba389215164b332853879 Author: Alan Garny '' Date: Fri Feb 17 18:21:32 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit d41741a3a0b68859b8506c82c12bb53942a99698 Author: Alan Garny '' Date: Fri Feb 17 18:14:41 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit 00aeea5c10828275f6ab5c36a69fbde7615b55d8 Author: Alan Garny '' Date: Fri Feb 17 17:41:13 2017 +0100 Revert '"General:' some work on keeping track of the position and size of dialogs '(#1224)."' This reverts commit 15ee521086ebd48c52c2719b2eedf62cbecb85c3. commit 15ee521086ebd48c52c2719b2eedf62cbecb85c3 Author: Alan Garny '' Date: Fri Feb 17 17:40:48 2017 +0100 General: some work on keeping track of the position and size of dialogs '(#1224).' commit b4832620d60bfb3c02e1cdb59ad3748cb5714c1f Author: Alan Garny '' Date: Fri Feb 17 16:35:33 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 8a332d647e553988d5eab98b97386154afed494e Author: Alan Garny '' Date: Fri Feb 17 16:16:45 2017 +0100 PMR support: let the user know if we simply cannot authenticate '(closes' '#1223).' commit f367801194630933655f00aa1a319eb01afb4bf2 Author: Alan Garny '' Date: Fri Feb 17 11:26:34 2017 +0100 PMR support: slight improvement to the use of our Web browser for authentication '[ci' 'skip].' commit 8cf1a14729be124ab5a34797dc7cb10a256c0376 Author: Alan Garny '' Date: Thu Feb 16 18:11:18 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 82fb83f5ad573cb6a7441c25b851e6cbfaf3eca5 Author: Alan Garny '' Date: Thu Feb 16 17:57:50 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit d4d3f22d94a57b9dac49cd20f6cc3cf835111a60 Author: Alan Garny '' Date: Thu Feb 16 17:34:49 2017 +0100 Some minor cleaning up. commit 6af65b44fc56c1ca5dccdb64f630be89230e8b44 Author: Alan Garny '' Date: Thu Feb 16 17:32:11 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 014a6e8361eb56f98a9c8c922cc32f8625d8d8e3 Author: Alan Garny '' Date: Thu Feb 16 17:27:00 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 8f534a219ddbc3c0a5411ceede24cd01c2f3c8eb Author: Alan Garny '' Date: Thu Feb 16 17:08:53 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 9b1715cd3e84c0a9a040922d7d2c8ec27ef8ec93 Author: Alan Garny '' Date: Thu Feb 16 17:08:10 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit db98713d4564cdb2a545c767e9398fb5c92d05e0 Author: Alan Garny '' Date: Thu Feb 16 16:09:35 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 1b81e3cb35f7aa16f483c99d1237d684dac8a743 Author: Alan Garny '' Date: Thu Feb 16 16:03:05 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit b492047cba707b61db84c6a1dfde289e653814f5 Author: Alan Garny '' Date: Thu Feb 16 14:52:14 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 309883ab9876c6030f94ae9990a42cce4c2be4a3 Author: Alan Garny '' Date: Thu Feb 16 14:34:47 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit daf13a1cee0e07a1fefcef6b8063edbdbe58c78b Author: Alan Garny '' Date: Thu Feb 16 14:15:36 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 11278aa5a1939b783be0a99546f86a16acac8788 Author: Alan Garny '' Date: Thu Feb 16 14:06:24 2017 +0100 Some minor cleaning up. commit 4fe3b8802bb58dda8d0248fcccd8a1f41b7ece61 Merge: b5a57fb13 c80b19cd1 Author: Alan Garny '' Date: Thu Feb 16 13:13:49 2017 +0100 Merge branch ''\''master'\''' into pmr-workspaces-window. commit c80b19cd16baf527749febe988aa66a17f5c2b89 Author: Alan Garny '' Date: Thu Feb 16 13:11:39 2017 +0100 CellML Annotation view: improved our use of the progress bar for the Web viewer. commit b52856535653162800511d9347af403074ffbd1b Author: Alan Garny '' Date: Thu Feb 16 12:57:09 2017 +0100 GUI: optimised our use of splitters. commit b5a57fb13f24be1a18eb523b5bb6cab624d1a669 Author: Alan Garny '' Date: Thu Feb 16 10:39:28 2017 +0100 Some minor cleaning up. commit ddaeffbd3b2169959a605f5dad0abee94c6f1773 Merge: a1faddad4 f07fc4d03 Author: David Brooks '' Date: Thu Feb 16 20:30:17 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit f07fc4d036cac9389c836a1bed756fcec4bff6a9 Author: David Brooks '' Date: Thu Feb 16 20:29:33 2017 +1300 PythonQtAPI plugin 'doesn'\''t' use the Plugin interface so remove it '(#1085).' commit a1faddad489031ff69de39d1887fa25e0102b286 Author: David Brooks '' Date: Thu Feb 16 16:15:14 2017 +1300 Jupyter notebook runs an OpenCOR 'kernel!' '(#1085).' commit d2b44a3d2504052b4818312685abe5dfe57d08fc Merge: 125c165a2 c1d003e96 Author: David Brooks '' Date: Thu Feb 16 08:16:42 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit b1d0c98770e08769623af731ef558b763d194625 Author: Alan Garny '' Date: Wed Feb 15 18:10:43 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 72d1ccedfb38e5921d4f0f35fb16ab505901b06a Author: Alan Garny '' Date: Wed Feb 15 18:10:23 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 1ebf22aa3e179e7a38deb97c21c7dac08fb78713 Author: Alan Garny '' Date: Wed Feb 15 17:21:56 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit a2522d12f740a57e01634aa599822bd51693f408 Author: Alan Garny '' Date: Wed Feb 15 16:48:55 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit 34dc6e3dc1ce986b51acc3bc570d87a3a84df600 Author: Alan Garny '' Date: Wed Feb 15 16:28:23 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit 71736b2e981697598cf30fe7e4ca02458a79ac04 Author: Alan Garny '' Date: Wed Feb 15 16:28:11 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit 7f8ce568c83a77a59bb7ccace38ac1781724b6b0 Author: Alan Garny '' Date: Wed Feb 15 11:49:57 2017 +0100 Some minor cleaning up. commit c1d003e9685da2135e4df5a8277f6263d144184a Author: David Brooks '' Date: Wed Feb 15 23:34:20 2017 +1300 Retrieve the correct package archive when git branches differ in their package configuration and/or version '(#1106).' commit 125c165a2ceb86f0f6efc21afb8fe3fadb2ab056 Merge: 8997ec632 2c8ecdfe4 Author: David Brooks '' Date: Wed Feb 15 15:51:13 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit 2c8ecdfe4ecf2979c9f62e09146172810dfd886b Author: David Brooks '' Date: Wed Feb 15 15:50:28 2017 +1300 Minor tidy ups '(#1085).' commit b422dd2d470c58487d569412b88ff85176c52b7e Author: David Brooks '' Date: Wed Feb 15 15:49:54 2017 +1300 Use our PythonQt branch '(#1085).' commit 635a483d58cdabf694305d6e5e1d35365b65cd64 Author: David Brooks '' Date: Wed Feb 15 15:48:41 2017 +1300 Update '`ctkAbstractPythonManager::executeFile`' for Python 3 '(#1085).' commit bfb012f9a15e798ba9a2f67ebe73af4d83787c76 Author: David Brooks '' Date: Wed Feb 15 15:47:36 2017 +1300 'Don'\''t' crash getting simulations if 'there'\''s' no single cell widget... '(#1085)' commit d2cb16f84dddeb5d4f97230f81d4ee216039f5e1 Author: David Brooks '' Date: Wed Feb 15 15:46:32 2017 +1300 Console window requires Python wrapper plugin '(#1085).' commit e8f4a92184871a68b39e7ab363e64118881ab186 Author: Alan Garny '' Date: Tue Feb 14 18:33:05 2017 +0100 PMR Workspaces window: some work on synchronising a workspace with PMR '(#1212' and '#1213).' commit 351d8df51a9d131db897185fe462e3b5adc27071 Author: Alan Garny '' Date: Tue Feb 14 17:54:59 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit c818ebca0659f6e80a909352aad7d8d40efa6c10 Author: Alan Garny '' Date: Tue Feb 14 17:44:21 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit 772a25854a96e0fbad910e7c7cfcc70d2bb5e8ee Author: Alan Garny '' Date: Tue Feb 14 16:33:17 2017 +0100 PMR Workspaces window: some work on using the same context menu for the workspace, folders and files '(#1213).' commit 1aa50a215180e221d7159ddf1a7ad0bec18fe7fa Author: Alan Garny '' Date: Tue Feb 14 11:30:03 2017 +0100 PMR Workspaces window: some work on getting rid of the stage/unstage context menu item '(for' a 'file)' '(#1212).' commit 837646da597d44dc1c890b29f333f1064277eda7 Author: Alan Garny '' Date: Tue Feb 14 11:03:27 2017 +0100 PMR Workspaces window: some work on getting rid of the stage/unstage context menu item '(for' a 'file)' '(#1212).' commit 8997ec6325cb944e15ecd369a08cde3b95cc7f4d Merge: 47cee29cf baaf3b4ca Author: David Brooks '' Date: Tue Feb 14 08:22:12 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit baaf3b4ca32234196bab5cc4c3e63c72c838bbfb Author: David Brooks '' Date: Tue Feb 14 08:17:56 2017 +1300 Zipping the python library was referencing the partly created archive... '(#1085).' commit b3e0e0f48174efc6bef86e573ba0be0aae0777b8 Author: Alan Garny '' Date: Mon Feb 13 16:33:43 2017 +0100 Some minor cleaning up. commit a1f8efe912066111bda463019fdcc974b3ac1035 Author: Alan Garny '' Date: Mon Feb 13 16:04:18 2017 +0100 File Organiser window: some minor refactoring '[ci' 'skip].' Two less files to compile as such. commit 85679ed0d8f42d28ad30cf3b1ef4d2c292cf85d7 Author: Alan Garny '' Date: Mon Feb 13 15:57:51 2017 +0100 PMR Workspaces window: some minor refactoring '[ci' 'skip].' One less file to compile as such. commit 5b602ea947a72c03bc2283b2660691ca4199ad11 Author: Alan Garny '' Date: Mon Feb 13 15:53:29 2017 +0100 Editor widget: some minor refactoring '[ci' 'skip].' One less file to compile as such. commit 654993fa48c7e1c4ae76906dc3d652553b9f8645 Author: Alan Garny '' Date: Mon Feb 13 13:00:35 2017 +0100 PMR-based windows: only reload them '(upon' changes to 'preferences)' if the PMR URL is different '(closes' '#1222).' commit 47cee29cfc08a7951827c8727fe454a6e33b39a6 Author: David Brooks '' Date: Mon Feb 13 16:07:15 2017 +1300 Work on a Jupyter kernel for OpenCOR '(#1085).' commit 5c15e325f35573642c32616b4bddb2f6a4612a02 Author: Alan Garny '' Date: Fri Feb 10 15:55:25 2017 +0100 Slight update to our What is New page '[ci' 'skip].' commit f230d0ce8141564d1bb970a546724b6d0935e9f7 Author: Alan Garny '' Date: Fri Feb 10 15:45:42 2017 +0100 CellML Annotation view: show the progress bar of our Web viewer '[ci' 'skip].' commit 2a1fc94de8a33633ce0f1286844984846ce7cf84 Author: Alan Garny '' Date: Fri Feb 10 14:54:00 2017 +0100 New snapshot. commit c516bfca8dbda9bd21bbf3c54081ef235c358e55 Author: Alan Garny '' Date: Fri Feb 10 14:53:18 2017 +0100 Slight update to our Downloads page '[ci' 'skip].' commit 5802f25c04e521942e3598e8104935fd0120a47d Author: Alan Garny '' Date: Fri Feb 10 14:46:01 2017 +0100 Slight update to our Known Limitations documentation '[ci' 'skip].' commit 5cabe813f493946257c1182080612aeb6dfcb48e Author: Alan Garny '' Date: Fri Feb 10 14:36:28 2017 +0100 Non-fixed dialogs: make sure that they all have a minimum size '[ci' 'skip].' In the case of our Plugins and Preferences dialogs, we do this through the '`resizeEvent()`' method since the content of those dialogs may change depending on what the user does. commit b0cba90a0e2fd7503f4cdc1447ede8df81ef6bb5 Author: Alan Garny '' Date: Fri Feb 10 14:33:50 2017 +0100 Core plugin: added a '`minimumWidgetSize()`' method '[ci' 'skip].' commit 866681563d33e48029909327aa5a88436b565e29 Author: Alan Garny '' Date: Fri Feb 10 13:29:42 2017 +0100 PMR support: slight improvement to the Preferences widget '[ci' 'skip].' commit 9ca6fcfc69d572c6d6c839bd8e66be71fad8a115 Merge: d1141bc13 40109c915 Author: Alan Garny '' Date: Fri Feb 10 11:57:09 2017 +0100 PMR Workspaces window: added the ''\''teaching'\''' instance to the list of PMR instances '(closes' '#1218).' commit 40109c915df54537cb1c8e0e9e574644dc2080e9 Author: Alan Garny '' Date: Fri Feb 10 11:15:45 2017 +0100 PMR Workspaces window: added the ''\''teaching'\''' instance to the list of PMR instances '(#1218).' commit d1141bc1342709a9cbadb17ca02e125a083af197 Author: Alan Garny '' Date: Fri Feb 10 10:26:01 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit e523c61d43cab8b89c75ca56c7ad677285d0ceba Merge: 24f584c3d 9d28de578 Author: David Brooks '' Date: Fri Feb 10 11:34:28 2017 +1300 Merge branch ''\''pythonplugin'\''' into jupyterplugin commit 9d28de5784cf4dee48df3629e18741c69b864006 Merge: 3f82cd282 06a0033d2 Author: David Brooks '' Date: Fri Feb 10 11:33:52 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 24f584c3da7fd71a5c2260e73a15575a8729d345 Author: David Brooks '' Date: Fri Feb 10 11:28:07 2017 +1300 Include SQLite in Python build for IPython and Jupyter. commit 3f82cd2823408e75a7c342a70700a4236a9e2def Author: David Brooks '' Date: Fri Feb 10 11:20:16 2017 +1300 Use a new git branch for Jupyter specific changes '(#1085).' commit 834c1d0acc9a8ab9db797a2319c8c81da54c0e5a Author: David Brooks '' Date: Fri Feb 10 11:10:41 2017 +1300 Use relative RPATHs in python executable '(#1085).' commit e1c9bedffa0a18e50eaab4ecdcbece2ba8baedf5 Author: David Brooks '' Date: Fri Feb 10 11:08:39 2017 +1300 Linking Python into OpenCOR executable is only for Linux '(#1085).' commit 06a0033d216b47ce8703f23fc175b4103bdbe99e Merge: e73cb9b50 4760de95c Author: Alan Garny '' Date: Thu Feb 9 18:28:10 2017 +0100 WebViewer widget: allow the use of a progress bar '(closes' '#1219).' commit e73cb9b5075eb97c6c2117b8500af01cfedb3582 Author: Alan Garny '' Date: Thu Feb 9 17:10:57 2017 +0100 Some minor cleaning up to our Downloads pages '[ci' 'skip].' commit 4760de95c93be831bf684d38eae19918264e0618 Author: Alan Garny '' Date: Thu Feb 9 16:58:23 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit ce97b235f05deb27eafcc223d32d27afd7f4e4c5 Author: Alan Garny '' Date: Thu Feb 9 16:45:35 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit c9922fa0c7b330df600d0f69fdc210101a18acfa Author: Alan Garny '' Date: Thu Feb 9 16:45:09 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit c219e03d66991974dd732156229c9c84d7876cfc Author: Alan Garny '' Date: Thu Feb 9 16:37:20 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit b0e45354dcb3683651a94d5ca093e8b0caf86c88 Author: Alan Garny '' Date: Thu Feb 9 13:42:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit 250f1a233941adf4a9866e7a939e000606070501 Author: Alan Garny '' Date: Thu Feb 9 12:56:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit 979525b06fcc85d2c5cea1867403bb1269311c97 Author: Alan Garny '' Date: Thu Feb 9 12:34:45 2017 +0100 Revert '"WebViewer' widget: some work on allowing the use of a progress bar '(#1219)."' This reverts commit 3a7cd3c801886edecc2b780cec25679e68f8e94e. commit 3a7cd3c801886edecc2b780cec25679e68f8e94e Author: Alan Garny '' Date: Thu Feb 9 11:45:54 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit 191d37e702b2b3410da3d20b32a6f62e52aa5658 Author: Alan Garny '' Date: Thu Feb 9 11:04:25 2017 +0100 WebViewer widget: some work on allowing the use of a progress bar '(#1219).' commit 39199b46b2d3337bbc101da7cfa624854f2fdc31 Author: David Brooks '' Date: Thu Feb 9 22:54:41 2017 +1300 We need to explicitly specify the locations of headers and libraries of pre-built external projects '(#1106).' commit 2bd60d480c7a13bf8cdf40cf3df4b8553e066afb Author: David Brooks '' Date: Thu Feb 9 15:43:29 2017 +1300 Add initial versions of README files for building Python related plugins. commit 046f2184ab316f60de475edb10cbda1d340f8e26 Author: David Brooks '' Date: Thu Feb 9 15:42:19 2017 +1300 Download latest versions of pre-built external packages '(#1106).' commit c7d0c3639349c67bd809fb89aa30d06fa44dd71f Author: David Brooks '' Date: Thu Feb 9 15:40:59 2017 +1300 Include SQLite in Python build '(for' IPython and 'Jupyter)' '(#1085).' commit b108e853206fd350cfa7794a51d0a425a361a6e0 Author: David Brooks '' Date: Thu Feb 9 15:35:46 2017 +1300 Ensure the Python library is linked to the OpenCOR executable for Linux '(#1085).' commit eb82946d00fc7b1b54dc2d436a20a2a44c6160f9 Author: David Brooks '' Date: Thu Feb 9 15:34:02 2017 +1300 More work on building Python under Linux '(#1085).' commit 2d0de8eff122651de9f625414c8bb1c8e740218c Author: David Brooks '' Date: Thu Feb 9 15:27:16 2017 +1300 Tidy up Python 'plugin'\''s' CMake script '(#1085).' commit cc850a38ef5ca511dc320cde9cb4d7ef1cdbe262 Author: David Brooks '' Date: Thu Feb 9 15:07:34 2017 +1300 Get OpenSSL building under Linux '(#1101).' commit ea7af8ac3365bd129f44ba24bbd36bf51e046707 Author: David Brooks '' Date: Thu Feb 9 15:05:19 2017 +1300 Let CMake know the location of our Python headers andf library '(#1085).' commit c99678f1e2afd58c78cf31c6ef9d689965f56fa8 Author: David Brooks '' Date: Thu Feb 9 15:02:16 2017 +1300 The Python and PythonQtAPI plugins need code for their interfaces... '(#1085).' commit 85069713f1377bba3cfbc04cf2110048f2c0befd Author: David Brooks '' Date: Thu Feb 9 14:59:09 2017 +1300 Always update, and hence configure and build, CMake external projects '(#1106).' commit 25428bc408823496b0bb46c83c9cdca3eea16818 Author: Alan Garny '' Date: Wed Feb 8 20:00:00 2017 +0100 New snapshot. commit 4d9b02618d4157a3ef9b76706d2956360e68de70 Author: Alan Garny '' Date: Wed Feb 8 19:58:41 2017 +0100 Slight update to our What Is New page '[ci' 'skip].' commit 3bae8dffd3c2c3542195c435dbf6505c4df2488f Merge: ec92c7241 e97fc23ce Author: Alan Garny '' Date: Wed Feb 8 19:54:33 2017 +0100 PMR Workspaces window: allow the PMR instance to be set in user Preferences '(closes' '#1069).' commit ec92c7241d6dd679f6622c39cba56d30730e84cf Author: Alan Garny '' Date: Wed Feb 8 19:24:57 2017 +0100 Slight updates to the downloads page '[ci' 'skip].' commit e97fc23ceb3f6f7e70f214607e397819f95b0450 Author: Alan Garny '' Date: Wed Feb 8 19:10:33 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 1e29622d248d656f062bd66450713af66ab6dbcc Author: Alan Garny '' Date: Wed Feb 8 18:58:51 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit a4bb54929c6256406723b89ae2da9ea3bf778ce9 Author: Alan Garny '' Date: Wed Feb 8 18:49:50 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit c2c28253d2519e9ec91fec0578c429b79994e4dc Author: Alan Garny '' Date: Wed Feb 8 18:35:28 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 73afed324bc5998b53de200f9a70a5ef277e6358 Author: Alan Garny '' Date: Wed Feb 8 17:05:21 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069)' '[ci' 'skip].' commit e952a3f9a0c16e7374838d13d4945ab7403b08c1 Author: Alan Garny '' Date: Wed Feb 8 16:47:35 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 41435f070ce9a2fe3112d5e2b53dc0b4c317b0d9 Author: Alan Garny '' Date: Wed Feb 8 16:45:04 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 9530b26c97b3d24e1bc7d1709c394d5fda3748bd Author: Alan Garny '' Date: Wed Feb 8 16:17:05 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit f045a13a942f27e3626a683af127ddb5adc71ac4 Author: Alan Garny '' Date: Wed Feb 8 15:44:01 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit bd3e07371204600f1ebfb40f1d8258e5b1e0bdd9 Author: Alan Garny '' Date: Wed Feb 8 15:41:47 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 4ed1a3caf9c1d721ad9ed7d56cde2870df7ba008 Author: Alan Garny '' Date: Wed Feb 8 15:36:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 865b27b0537c71e61a4678bc5042f462fa5b9fcf Author: Alan Garny '' Date: Wed Feb 8 15:36:22 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit fa2066287e462a5d9881d96fa15c837d1a192d18 Author: Alan Garny '' Date: Wed Feb 8 15:03:03 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 818cd2c7090706bbbad86f00de4a5e7ed990cd2f Author: Alan Garny '' Date: Wed Feb 8 13:59:09 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit d0ab4468148f55789be2d35a0c8690d839a2b3db Author: Alan Garny '' Date: Wed Feb 8 13:45:10 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 4cdd42442534abce133f9ee26f92faa5e2fc6607 Author: Alan Garny '' Date: Wed Feb 8 13:28:40 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit f295b3771c3a57c316d4e9077a94bc5cdeee900a Author: Alan Garny '' Date: Wed Feb 8 13:18:26 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 4fd61addf0971028758492583d2862022b18cf41 Author: Alan Garny '' Date: Wed Feb 8 13:13:12 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 880b84ba2889853703e1b18881cd802246506c6f Merge: 30efa822b e9a1fd7a7 Author: Alan Garny '' Date: Wed Feb 8 13:11:17 2017 +0100 Merge branch ''\''master'\''' into issue1069. commit e9a1fd7a7e42252e81b9be77ff86c91d81af0ade Author: Alan Garny '' Date: Wed Feb 8 11:56:09 2017 +0100 Some minor cleaning up. commit 30efa822b134a78138c8e6c2b8d4503ea6c49f5a Author: Alan Garny '' Date: Wed Feb 8 11:37:30 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit a45084a4975305234ad9d4990f3799ebb5e0de0a Author: Alan Garny '' Date: Wed Feb 8 11:35:46 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 670f3eb9da16cf8538b91515b0634dfafe08c3ed Author: Alan Garny '' Date: Wed Feb 8 11:02:21 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit c00deb70c9fd94e0cec8112030f4a5c158dbcf30 Author: Alan Garny '' Date: Wed Feb 8 11:00:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit eb3cfe59d6bd75cf12656c7fb98496b6927dbeb7 Author: Alan Garny '' Date: Wed Feb 8 10:56:08 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit f830943be3120eb1ec3a5b4025c9a746ffdccbee Author: Alan Garny '' Date: Wed Feb 8 10:44:47 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit ae91f51321303c23e102995bd4449f21127c4045 Author: Alan Garny '' Date: Tue Feb 7 19:12:53 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 6a0611957a51764aeab68476fafa7b984954ae6b Author: Alan Garny '' Date: Tue Feb 7 18:56:41 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit cfc918a49a8a8418059e9dc451c168eb005c1b59 Author: Alan Garny '' Date: Tue Feb 7 18:33:42 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit e3179c31052863e5afbf4517942ed366386b0eaf Author: Alan Garny '' Date: Tue Feb 7 16:58:12 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 0b50209343fb26faaaf739101433ec37501000dc Author: Alan Garny '' Date: Tue Feb 7 16:45:17 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit e11d52cb5fbe3ab451e9397bfd55c4ac0057fc7d Author: Alan Garny '' Date: Tue Feb 7 16:40:36 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 196f4c98c02c070808259bca18bfe1fa2af79dc4 Author: Alan Garny '' Date: Tue Feb 7 16:36:14 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit a1179d9f2df2a7d54c699fcc6db2d474f322e46c Author: Alan Garny '' Date: Tue Feb 7 16:34:56 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 8715662230d43cc047fda23838ebc8134c29a902 Author: Alan Garny '' Date: Tue Feb 7 16:26:56 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit e9c90ff5f5cc3a9a8230e0f5cfea800cd9eb57cb Author: Alan Garny '' Date: Tue Feb 7 16:24:03 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 027c6775bd2cb062de5c10cc2d27946d55b9e073 Author: Alan Garny '' Date: Tue Feb 7 15:56:32 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 65f51bbbe57d01672eaf87c71ba3f98dc259b17a Author: Alan Garny '' Date: Tue Feb 7 15:34:58 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 196d4fa57b7227da4c4a1b7d6a4d4757254cb96e Author: Alan Garny '' Date: Tue Feb 7 15:23:59 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit ddb8a3dffc56fe14f925d8fc354c74a2e28c17ab Merge: 4e55b44fc f8e9cf926 Author: Alan Garny '' Date: Tue Feb 7 14:20:44 2017 +0100 Merge branch ''\''master'\''' into issue1069. commit f8e9cf926820887a0f947edb6af5d66f73194a53 Merge: 6ddb06df4 2d06e291a Author: Alan Garny '' Date: Tue Feb 7 14:12:32 2017 +0100 PMR support: 'don'\''t' rely on an external browser to do the PMR authentication '(closes' '#1211).' commit 6ddb06df4f00e916af657ae99140770fb8744704 Merge: 0a6b48707 f171350a6 Author: Alan Garny '' Date: Tue Feb 7 14:11:49 2017 +0100 Slight update to OAuth. commit f171350a601f341203ca7a0f7deb9acc00e37caa Author: Alan Garny '' Date: Tue Feb 7 13:28:30 2017 +0100 Slight update to OAuth. commit 3e3f5e74ef4817b4cafc460d67a79184ff5c4760 Author: Alan Garny '' Date: Tue Feb 7 13:16:38 2017 +0100 Slight update to OAuth. commit 2d06e291a3b1414f8f9ad3b00bf864d1951f7fa1 Author: Alan Garny '' Date: Tue Feb 7 13:02:59 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit 011e44ba9f683f30f8a48f56fb912c54cd180355 Author: Alan Garny '' Date: Tue Feb 7 12:48:11 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit a3e503b96ffccfa8883de763d0098e35e007f163 Author: Alan Garny '' Date: Tue Feb 7 12:36:38 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit 52e7d01220fe582ff2d749be3260482ef51d56ed Author: Alan Garny '' Date: Tue Feb 7 11:48:30 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit 780e6e21dd4b24a5685af40259fcdf18f383e2c5 Author: Alan Garny '' Date: Mon Feb 6 19:31:49 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit f49e5455a75906dbf981163ce6eaa8a3554d943f Author: Alan Garny '' Date: Mon Feb 6 19:23:28 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit d1ee11d65cb0c4e69953c8bbbe747226e9499112 Author: Alan Garny '' Date: Mon Feb 6 19:06:46 2017 +0100 PMR support: some work on not relying on an external browser to do the PMR authentication '(#1211).' commit 4e55b44fc38dc61b6d256ba9203c923bc0fe8e75 Author: Alan Garny '' Date: Mon Feb 6 15:58:50 2017 +0100 PMR Workspaces window: some work on allowing the PMR instance to be set in user Preferences '(#1069).' commit 0a6b487072f8427a9c40d72238dd4b1e555e1064 Author: Alan Garny '' Date: Mon Feb 6 15:26:48 2017 +0100 Help window: fixed a few things, now that we set our locale as early as possible. Also fixed a small issue with the VPR logo in our error message. commit d1c0d0a0739580542f777e0955c2ee5a39534e5d Author: Alan Garny '' Date: Mon Feb 6 14:33:50 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 02a6be9ba72a9b5f4b7c72dbb62789a28f49f523 Author: Alan Garny '' Date: Mon Feb 6 14:14:56 2017 +0100 Set the locale as early as possible '[ci' 'skip].' We used to do it at the end of 'MainWindow::loadSettings(),' but former note '#2' is not relevant anymore '(since' we $'don\342\200\231t' keep track of the number of graph panels anymore in the SingleCell 'view)' and, in fact, it should never have been relevant in the first place. In other words, we should have done things in s such a way that it $'wasn\342\200\231t' dependent on whether the locale was already set or not. commit 2b4ab5c36730a77c2c0571b470e51a39666bc2c6 Author: Alan Garny '' Date: Mon Feb 6 13:36:26 2017 +0100 CellML support: generate an error when a model has more than one variable of integration '(closes' '#1210).' Oops, forgot to check our tests and actually add one for a model that has more than one 'VOI!' commit 97c3f987cff9be0b8b9caf456fa20dfb3717689f Author: Alan Garny '' Date: Mon Feb 6 11:11:04 2017 +0100 Documentation: removed the '"Top' 'Priority"' label '[ci' 'skip].' It just $'doesn\342\200\231t' feel $'\342\200\230right\342\200\231' '(very' subjective, I 'know).' commit 8995e87c139efc291ddcc6423be6e072f9ba8fec Author: Alan Garny '' Date: Mon Feb 6 11:07:02 2017 +0100 CellML support: generate an error when a model has more than one variable of integration '(closes' '#1210).' commit c3d6a6d6cace837f428a68e0731427ec886852de Author: Alan Garny '' Date: Sat Feb 4 10:35:33 2017 +0100 PMR Workspaces window: warn the user if we try to commit without a message '(closes' '#1209).' commit 6c948ccd101e4076169c039790eecdf3e2dd5c23 Author: Alan Garny '' Date: Sat Feb 4 10:32:04 2017 +0100 PMR Workspaces window: let the user know if no name and/or email are provided '(closes' '#1208).' commit 005fdb4fd6470f558608330c2a2db647afd3e5b3 Author: Alan Garny '' Date: Sat Feb 4 10:23:53 2017 +0100 Had forgot to translate a few things '[ci' 'skip].' commit 464b0390efb37881cb3f4e192c53c0a44fd2dcb9 Author: Alan Garny '' Date: Fri Feb 3 21:14:09 2017 +0100 Slight update to our downloads page '[ci' 'skip].' commit 4933aa3036f0d89a415329a05174ce484dfa7321 Merge: 79eabe111 5bd81423b Author: Alan Garny '' Date: Fri Feb 3 21:08:12 2017 +0100 PMR Workspaces window: allow the 'user'\''s' name and email to be set in Preferences '(closes' '#1057).' commit 79eabe1115f24e4d1114b076c2f53bbe68cd506d Author: Alan Garny '' Date: Fri Feb 3 18:57:47 2017 +0100 Oxygen library: upgraded to version 5.30.0 '[ci' 'skip].' commit 5bd81423b1f1141350db11aae72ac98ca8f28c91 Author: Alan Garny '' Date: Fri Feb 3 17:25:11 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit 2789dfe52a8d0c7c58197634ffaf74b909cfb6cf Author: Alan Garny '' Date: Fri Feb 3 17:22:39 2017 +0100 Some minor cleaning up. commit eb4a06877754a8c41f10e563bf502f4e16b5cfba Author: Alan Garny '' Date: Fri Feb 3 15:41:42 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit d5bc79a76a71cb305604fc85bafc1f9261e4f124 Author: Alan Garny '' Date: Fri Feb 3 15:38:49 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit 7b221b1aa63305c37281d1b2f5a29d8af348249a Author: Alan Garny '' Date: Fri Feb 3 15:33:02 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit a535d369d17bcfb05d562346ae3fcc22ba93756f Author: Alan Garny '' Date: Fri Feb 3 15:00:45 2017 +0100 Some minor cleaning up. commit a25d88bad7a97cc2a5c043ae13f4fd1a58811368 Merge: bed73b5e4 0fcd31e18 Author: Alan Garny '' Date: Fri Feb 3 14:41:30 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit 0fcd31e18a23bee34f37167c1e8675d72798eecb Author: Alan Garny '' Date: Fri Feb 3 14:41:18 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit bed73b5e4d1f2de262d5712e3677d00adee41c6f Merge: f70464522 230c30b59 Author: Alan Garny '' Date: Fri Feb 3 14:36:08 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit 230c30b597b2e5bbf7cb822233d31a443de39edb Author: Alan Garny '' Date: Fri Feb 3 14:35:52 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit f70464522a1e08ce7ea9e99ec04be392e20a3ef2 Author: Alan Garny '' Date: Fri Feb 3 14:02:46 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit cf26bd1c97a2beb4780589086f18f3511e44fd4a Merge: 26c23a697 ff7774ef6 Author: Alan Garny '' Date: Fri Feb 3 13:19:16 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit ff7774ef62189d2c70c081af43a5697c96fed308 Author: Alan Garny '' Date: Fri Feb 3 13:18:57 2017 +0100 Some minor cleaning up '[ci' 'skip].' Replaced $'\342\200\234dialog' $'box\342\200\235' with either $'\342\200\234dialog\342\200\235' or $'\342\200\234message' $'box\342\200\235.' commit 26c23a6978b9a9a96ad736cb9688c21675416b90 Merge: 6bc5b8cbe 351642e2b Author: Alan Garny '' Date: Fri Feb 3 13:03:26 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit 351642e2be7cbbdb82b8b542c7e97f324b50c190 Author: Alan Garny '' Date: Fri Feb 3 13:03:03 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 6bc5b8cbe718f30936362c5e3c15ba35b0b107c7 Merge: 051ce778e 7cb53d18a Author: Alan Garny '' Date: Fri Feb 3 10:26:27 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit 7cb53d18a39de70ff35ca60b09232d091cb9015b Author: Alan Garny '' Date: Fri Feb 3 10:25:38 2017 +0100 Slight update to our prerequisites '[ci' 'skip].' commit 051ce778e2c68361fb0c382dc6be5de2735b2d89 Merge: 617498e1a 65ad8a795 Author: Alan Garny '' Date: Fri Feb 3 09:36:24 2017 +0100 Merge branch ''\''master'\''' into issue1057. commit 65ad8a79521699b2c03c57a6a4f84d1bdde3d43a Author: Alan Garny '' Date: Fri Feb 3 09:35:55 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 617498e1a4663602ccb07e6f56401230dd829a9e Author: Alan Garny '' Date: Thu Feb 2 19:35:37 2017 +0100 PMR Workspaces window: some work on allowing the 'user'\''s' name and email to be set in Preferences '(#1057).' commit 4180787a38572b40b183e7d345c475d1867b62d7 Author: Alan Garny '' Date: Thu Feb 2 19:16:39 2017 +0100 PMR Workspaces window: fixed a problem with the log on/off icon not showing properly on a Mac with a HiDPI screen resolution '(closes' '#1204).' Sometimes, the log on/off icon $'didn\342\200\231t' have a clean background. Hopefully, this should fix it. commit 4aaf36b524ad73fa25aab1801df089fe22f35496 Author: Alan Garny '' Date: Thu Feb 2 19:13:59 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 05e71eed2991ed04c634336de003372f23e10c57 Author: Alan Garny '' Date: Thu Feb 2 18:39:26 2017 +0100 Slight improvements to our downloads page '[ci' 'skip].' commit 5f1566fc96343991859e27d568d5bc0de987d9c4 Author: Alan Garny '' Date: Thu Feb 2 18:33:53 2017 +0100 PMR Workspaces window: fixed a problem with the log on/off icon not showing properly on a Mac with a HiDPI screen resolution '(closes' '#1204).' We used to use '`QWidget::setGraphicsEffect()`' to make the icon greenish/redish and it was working on non-HiDPI resolutions, but for some reasons things were going awry on HiDPI resolutions. So, now, we instead rely on '`QGraphicsItem::setGraphicsEffect()`.' $'It\342\200\231s' a bit more cumbersome, but not sure there is another $'solution\342\200\246' commit 5a60bc284f6cd6c5f6917afa8d4ca47bf0a5c30d Author: Alan Garny '' Date: Thu Feb 2 13:27:24 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit f5d383ab31b8b0cdb4fdc5093e289598f1ae16ff Author: Alan Garny '' Date: Thu Feb 2 10:57:25 2017 +0100 Slight updates to our developer documentation '[ci' 'skip].' commit a07cd91bf0c97c8cd186727ace208fa2c43bd23f Merge: 1864c6a24 e98979af3 Author: David Brooks '' Date: Thu Feb 2 13:28:54 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit e98979af32cf4b5196a74cd13ddd03dfd35b2219 Author: Alan Garny '' Date: Wed Feb 1 10:37:57 2017 +0100 New snapshot. commit 1e34fa6b4455202140e70dafeed83bdd045645f6 Author: Alan Garny '' Date: Wed Feb 1 10:36:16 2017 +0100 Documentation: various minor updates related to our new PMR Workspaces window '[ci' 'skip].' commit 4cb3b3a8edfa6c371621a8f11436bb7e240695fe Author: Alan Garny '' Date: Tue Jan 31 18:58:56 2017 +0100 PMR Workspaces window: reordered the French translations '[ci' 'skip].' commit 4667e6928da9dff14463c406b4461289c005ee3d Author: Alan Garny '' Date: Tue Jan 31 18:50:02 2017 +0100 PMR Workspaces window: added French translations '[ci' 'skip].' commit 4f8abd572b4e6f1578df8d838d3ff603242f96ef Author: Alan Garny '' Date: Tue Jan 31 18:26:52 2017 +0100 PMR support: reordered the French translations '[ci' 'skip].' commit d877508845a4b8c38fabc11b48ac149e2582f0a5 Author: Alan Garny '' Date: Tue Jan 31 18:18:04 2017 +0100 PMR support: added French translations '[ci' 'skip].' commit a94b3d6460818cfcdb88cb0d5c7180fb0ce2c6af Author: Alan Garny '' Date: Tue Jan 31 17:37:18 2017 +0100 PMR support: various improvements. PMR Workspaces window: handle the case where a user deletes the folder where a workspace has been cloned. PMR support improvements: - Workspace manager: can now a remove workspace. - Workspace: $'can\342\200\231t' set the path or ownership anymore. Need to specify a path when opening. Handle the case where the folder where we are cloned has been deleted. commit 108ad742802582f234ac3fc3e4874fbca99b60f8 Author: Alan Garny '' Date: Tue Jan 31 15:20:46 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 9f0e3ced91154ef8aac0790ae455da56fd0f7386 Author: Alan Garny '' Date: Tue Jan 31 14:52:18 2017 +0100 ZIP support: updated the code for the Qt-side of things. commit ad08e3dfb2bbf5be68544c67c180a83ea87f0ac4 Author: Alan Garny '' Date: Tue Jan 31 14:14:42 2017 +0100 File Organiser window: some refactoring. The idea was to stop using 'QStandardItem::setData()/data()' and, instead, rely on a QStandardItem-based class. commit 1864c6a2451bf5e267e562dc5c23de90ee5fbbb0 Merge: ed0d115c9 022cd130a Author: David Brooks '' Date: Tue Jan 31 13:12:56 2017 +1300 Merge branch ''\''master'\''' into python_issue1141 commit 022cd130a53213971be4838914cdc05b0874a901 Author: Alan Garny '' Date: Mon Jan 30 18:04:19 2017 +0100 PMR Workspaces window: some minor refactoring. commit ebf8565d098f60ef86f3dcedff9f2cf43538736f Author: Alan Garny '' Date: Mon Jan 30 17:38:26 2017 +0100 OpenSSL: upgraded to version 1.0.2k '(closes' '#1202).' commit ad833550dcb726a8a681ec010c7c39e749342e6f Merge: f1048c0ba 7f8d359cc Author: Alan Garny '' Date: Mon Jan 30 16:58:47 2017 +0100 PMR Workspaces window: made PR '#1124' more in line with the rest of OpenCOR '(closes' '#1141).' commit 7f8d359cc18c253bdcb51d81cfc41e596b949ae7 Merge: fc9f56cca f1048c0ba Author: Alan Garny '' Date: Mon Jan 30 16:12:04 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit f1048c0ba6227dcfeea37c33de9ed840f8369516 Author: Alan Garny '' Date: Mon Jan 30 16:10:41 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit fc9f56cca07c5db2f2ff6c5529b6b7ce93d74c39 Author: Alan Garny '' Date: Mon Jan 30 16:09:30 2017 +0100 PMR support: switched to the official version of PMR. commit ed0d115c9e0c071c19b8d1ddd9f2da6da62add8a Author: David Brooks '' Date: Sun Jan 29 14:30:23 2017 +1300 Python helper scripts need to be in git... '(#1085).' commit 699d3e1b51fbb526ad37d9c2b44ce5236166a7d4 Author: Alan Garny '' Date: Sat Jan 28 10:10:59 2017 +0100 Some minor cleaning up. commit 7148eaab80277292b69b123807efc8cadb097c54 Merge: 423406d48 98a51f5d2 Author: Alan Garny '' Date: Sat Jan 28 10:06:20 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 98a51f5d23217fee31aea3c855c1decb27e38fef Author: Alan Garny '' Date: Sat Jan 28 10:05:38 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 2ddd6ec78585dc1230a991e6142c9a4ad9e6d759 Merge: acabf9a2d e4a084445 Author: David Brooks '' Date: Sat Jan 28 20:37:09 2017 +1300 Merge branch ''\''pythonplugin'\''' into python_issue1141 commit e4a0844454c799ff72cf7380a6b83cfa86d768a9 Author: David Brooks '' Date: Sat Jan 28 14:28:09 2017 +1300 Remove unused CMake parameter '(#1085).' commit 423406d480480f97fe963c7f0de3872129c7fe97 Author: Alan Garny '' Date: Sat Jan 28 00:52:29 2017 +0100 Some minor cleaning up. commit 50eba26628ce76749898d69667c8e8ddb2287715 Author: Alan Garny '' Date: Sat Jan 28 00:50:28 2017 +0100 Revert '"Some' minor cleaning 'up."' This reverts commit ba76dac1227dd6754e28ddb21db41ae17d20e59f. commit 238f00c1373c53dcdbbb548612b59547a3da31c1 Author: Alan Garny '' Date: Sat Jan 28 00:45:11 2017 +0100 PMR window: updated translations. commit ba76dac1227dd6754e28ddb21db41ae17d20e59f Author: Alan Garny '' Date: Sat Jan 28 00:41:00 2017 +0100 Some minor cleaning up. commit 73cdbdbfe3be21e2b2407e015107243f99f311a3 Merge: 8929867f2 188f5b81f Author: Alan Garny '' Date: Sat Jan 28 00:35:31 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 188f5b81fd841ee0b15c940542a82a73f985a2dc Author: Alan Garny '' Date: Sat Jan 28 00:20:28 2017 +0100 File Organiser window: some minor GUI improvement. This resulted in adding an 'overlayedIcon()' method '(with' different 'signatures).' commit 1a8ed87fe6f2e8b0590060c87799d51ddf860a66 Author: Alan Garny '' Date: Sat Jan 28 00:18:43 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 5bca6db120ab7f1058b194ec07faa29247b3c80d Author: Alan Garny '' Date: Sat Jan 28 00:17:21 2017 +0100 Added a signature to our 'iconDataUri()' method '[ci' 'skip].' commit f48b34a876101b7e41aa3680d27da347678f2800 Author: Alan Garny '' Date: Sat Jan 28 00:15:45 2017 +0100 File Browser window: minor GUI improvement. commit 85bcefa5d92e77b543cbf4021a921aee634974fb Author: Alan Garny '' Date: Sat Jan 28 00:15:17 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 8929867f210029bdfeaff2ebf08843c1122e5639 Merge: c94d4efd6 d1815ab31 Author: Alan Garny '' Date: Fri Jan 27 17:42:29 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit d1815ab31ae9e2d6c6d7ba1921d390be1f21c266 Author: Alan Garny '' Date: Fri Jan 27 17:41:17 2017 +0100 Replaced our formats/README.rst file with formats/README.txt since 'it'\''s' a file that needs to be distributed and reStructuredText is probably not the most appropriate here '[ci' 'skip].' commit c94d4efd69bda248c5333f7c62268666aa4320d8 Merge: f7c298859 f3d5eb413 Author: Alan Garny '' Date: Fri Jan 27 17:20:13 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit f3d5eb4130479f98c5eaf607475e500421be8152 Author: Alan Garny '' Date: Fri Jan 27 17:19:35 2017 +0100 Slight update to our main CMakeLists.txt file. commit f7c298859fb4d4fe9dc453c368737facad01226b Author: Alan Garny '' Date: Fri Jan 27 17:04:15 2017 +0100 PMR Workspaces window: various fixes to the contents of our context menu. commit cfa62d4b2d89089d14f9ef3517e67b49119a06f8 Author: Alan Garny '' Date: Fri Jan 27 16:33:24 2017 +0100 PMR support: slight improvement to the way we list conflicted files. commit 48f89fb51767365c41075f2d889a4707af5ea15d Author: Alan Garny '' Date: Fri Jan 27 16:20:35 2017 +0100 Some minor cleaning up. commit 597c24feb0f0908713e70b3a369ef1677df15b36 Author: Alan Garny '' Date: Fri Jan 27 16:06:54 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit c09d29eaf2f369dae0112620fe7d7ec8e8c250e9 Author: Alan Garny '' Date: Fri Jan 27 15:36:45 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit 703cd9ccb01162b4c7d76247a403a89bac06d463 Author: Alan Garny '' Date: Fri Jan 27 15:06:48 2017 +0100 Improved our 'overlayedIcon()' method. We can now stretch an icon, if we want. commit 9d6a2588dbbe9f31a5039882bcb5b33cd1071b8a Author: Alan Garny '' Date: Fri Jan 27 14:29:15 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit 3826df7db55496af32cb0bf084840f2eaaca9525 Author: Alan Garny '' Date: Fri Jan 27 14:24:06 2017 +0100 Some minor cleaning up. commit 1ff339e19f71172eb300603a02a835899b96112f Author: Alan Garny '' Date: Fri Jan 27 11:51:08 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit e01903622f011430260b1b4dfbd335a3d54ac84d Author: Alan Garny '' Date: Fri Jan 27 11:50:24 2017 +0100 Some minor cleaning up. commit f1fd7ce6ef1460cc27e80b3d563c6b33d3d2f9a4 Author: David Brooks '' Date: Fri Jan 27 23:02:57 2017 +1300 Upgrade OpenSSL to version 1.0.2k '(#1202).' commit 561a48b4ca019b444250ce14f4cdffd97abf5990 Author: David Brooks '' Date: Fri Jan 27 22:59:39 2017 +1300 Get NumPy include directory right... '(#1085).' commit ee00de5f3d8709fbbdf9b59a90bc132ce75bfc85 Author: Alan Garny '' Date: Fri Jan 27 10:14:08 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit cd13820b9baaca719a4ca6c3e63151645afe16d0 Author: Alan Garny '' Date: Fri Jan 27 09:56:03 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit f0abbd8648157cd1a8def6abdb898d29bfcb256e Author: Alan Garny '' Date: Fri Jan 27 09:24:28 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit df954db08b8d0e6d33201603cb2e61ab38d1cdd2 Author: David Brooks '' Date: Fri Jan 27 14:26:33 2017 +1300 Correctly specify PythonQt library under Windows '(#1085).' commit 7c5e56e9e9a9daec33dea261c932979b4a0c2551 Author: David Brooks '' Date: Fri Jan 27 14:25:40 2017 +1300 Specify NumPy include directory even if not yet built '(#1085).' commit 0e6ac56c196601c179d599393b6a234b1d114f05 Author: Alan Garny '' Date: Thu Jan 26 19:29:32 2017 +0100 Some minor cleaning up. commit be7a5d23e0bcad06c7f1e71e38a8e31bbf3707e0 Author: Alan Garny '' Date: Thu Jan 26 18:18:13 2017 +0100 PMR Workspaces window: added the New and Reload actions to our 'widget'\''s' context menu. commit f46bd648f17017499c72663d9c781588a47b8ab2 Author: Alan Garny '' Date: Thu Jan 26 17:53:11 2017 +0100 PMR Workspaces window: fixed an original bug with creating a new workspace. The problem was that the workspace $'wasn\342\200\231t' considered to be ours upon creation, meaning that the wrong workspace icon was used. '(However,' upon leaving and restarting OpenCOR, everything was 'fine.)' commit fcda510a4b12c5a661b9e486ee654631a625c929 Author: Alan Garny '' Date: Thu Jan 26 17:47:26 2017 +0100 Some minor cleaning up. commit b6fdfca8e4794be21e742b45b0b2563f6cc40375 Author: Alan Garny '' Date: Thu Jan 26 16:51:59 2017 +0100 Some minor cleaning up. commit c51a6d7423a1be0ea908a0de504334b0815684b9 Author: Alan Garny '' Date: Thu Jan 26 16:47:40 2017 +0100 PMR Workspaces window: some work on committing, pulling and pushing. commit e5b98a29ee169a225dca511cfce2b4859ba023d3 Author: Alan Garny '' Date: Thu Jan 26 16:45:56 2017 +0100 Some minor cleaning up. commit b41a90682cee7f9a13f1b82499a171b0cde30cf8 Author: Alan Garny '' Date: Thu Jan 26 16:30:49 2017 +0100 Some minor cleaning up. commit e6da655fc61fd188dc4fcae8d0cf7c5ffc229a5b Author: Alan Garny '' Date: Thu Jan 26 16:13:50 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit ab128b409508cf3d25e2a4db4bfe9f99ef74007e Author: Alan Garny '' Date: Thu Jan 26 15:04:52 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit bd44ee353903e4dff31060e3ea055f8539331262 Author: Alan Garny '' Date: Thu Jan 26 15:01:05 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 8adb8793abbe7caef16065f989351f8dfcbd9831 Author: Alan Garny '' Date: Thu Jan 26 14:49:17 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 6b5850acbddaa3d4c6552c0f5a0ec3f391f629c4 Author: Alan Garny '' Date: Thu Jan 26 14:44:12 2017 +0100 Some minor cleaning up. commit 0042d415e16296aa803d56abe01bbb376adcc9a3 Author: Alan Garny '' Date: Thu Jan 26 14:38:47 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit c5320bb8f8ffffda2e5158b16a19752ddae3a89f Author: Alan Garny '' Date: Thu Jan 26 14:08:14 2017 +0100 Some minor cleaning up. commit 4f8f78dd7270c395afcac36e94d83d2be990cbff Author: Alan Garny '' Date: Thu Jan 26 14:05:40 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 77775d4eaecba595d51751b70b3f1985a7bdfdf3 Author: Alan Garny '' Date: Thu Jan 26 13:52:47 2017 +0100 Some minor cleaning up. commit 012d783b95b9d061c64f745f94cb6167756e97fe Author: Alan Garny '' Date: Thu Jan 26 13:52:33 2017 +0100 PMR Workspaces window: some work on staging/unstaging files. commit 2e8d7c6ac5b512b3e7870057b783546bef6cd278 Author: Alan Garny '' Date: Thu Jan 26 13:17:50 2017 +0100 PMR Workspaces window: sort and resize our tree view widget whenever needed and optimally. commit dfc482bb639ec6f82120f4b49060fc017d8eddc2 Merge: a554ca39d b491ae069 Author: Alan Garny '' Date: Thu Jan 26 12:54:20 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit b491ae0691f52bebfdbdcf4f1275e8163e9d3b96 Merge: 9436fe4c2 dd3395ccb Author: Alan Garny '' Date: Thu Jan 26 12:52:05 2017 +0100 Access a 'simulation'\''s' file name '(closes' '#1196).' commit 9436fe4c25e02b5f2b48fe521d58119773420d07 Author: Alan Garny '' Date: Thu Jan 26 12:51:29 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit b7aa01e9546a5fd5af170868c590b9588aab6434 Merge: 3765796b5 6c599cedb Author: Alan Garny '' Date: Thu Jan 26 12:48:32 2017 +0100 Refactor code to find a 'simulation'\''s' solver interface '(closes' '#1198).' commit a554ca39dbfb05110a7918288b47cdb9b5e55119 Author: Alan Garny '' Date: Thu Jan 26 11:54:16 2017 +0100 PMR Workspaces window: make sure that things are properly sorted in our tree view. commit 9b81fccbf2eb4b6a5dce50bc7967a5351142398c Merge: b1fc3940c 6c599cedb Author: David Brooks '' Date: Thu Jan 26 23:15:10 2017 +1300 Merge branch ''\''ssv_solverinterface'\''' into pythonplugin commit b1fc3940c00733b759f890fe7d37644843e3bc48 Merge: 9ffd1191a 6f4e24451 Author: David Brooks '' Date: Thu Jan 26 23:14:59 2017 +1300 Merge branch ''\''ssv_runcrash'\''' into pythonplugin commit 9ffd1191a869f7cef750e4dc02d7ff1133b0aff9 Merge: 3f6e42149 dd3395ccb Author: David Brooks '' Date: Thu Jan 26 23:14:40 2017 +1300 Merge branch ''\''ssv_filename'\''' into pythonplugin commit 3f6e4214916da56cbb09aa08710f07f4e828bfd8 Merge: da00e951d 3765796b5 Author: David Brooks '' Date: Thu Jan 26 23:12:42 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 6f4e24451e74f986bb9553decec2a7235240d1ef Merge: 53bb0d148 3765796b5 Author: David Brooks '' Date: Thu Jan 26 23:12:14 2017 +1300 Merge branch ''\''master'\''' into ssv_runcrash commit dd3395ccb4d3f85ceedd74b6fbf9f20a4cff1f56 Merge: a0cf897b7 3765796b5 Author: David Brooks '' Date: Thu Jan 26 23:11:41 2017 +1300 Merge branch ''\''master'\''' into ssv_filename commit 6c599cedbb95184f76706f965f71a1ee7a6bbb74 Merge: ef0d4ebd6 3765796b5 Author: David Brooks '' Date: Thu Jan 26 23:11:10 2017 +1300 Merge branch ''\''master'\''' into ssv_solverinterface commit ef0d4ebd64bd65b30a0b3cc3e33eda07a7e8d8c9 Author: David Brooks '' Date: Thu Jan 26 23:08:47 2017 +1300 Minor code tweaks '(#1198).' commit a0cf897b754197ee86eb32cb4666090986abb110 Author: David Brooks '' Date: Thu Jan 26 22:50:17 2017 +1300 Tweak code style '(#1196).' commit acabf9a2dd4517d42b201b28ec880fe57ff0e653 Author: Alan Garny '' Date: Thu Jan 26 10:38:09 2017 +0100 PMR Workspaces window: now properly remove items that have been deleted. commit a1168201d7525099a91ff912aeb44ecccb306435 Author: Alan Garny '' Date: Thu Jan 26 10:21:04 2017 +0100 Some minor cleaning up. commit edddb3cfeca7a0945962c1ca112a646c850ae119 Merge: eaa7d4b30 3765796b5 Author: Alan Garny '' Date: Thu Jan 26 09:52:12 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 3765796b50c830532340c3e7f672e48047cb2eae Author: Alan Garny '' Date: Thu Jan 26 09:21:38 2017 +0100 Travis CI: trying to enforce the use of Qt 5.6.2 on macOS. commit ad4b7865bb8f6ff0289bc0aad16f9ce381e77591 Author: David Brooks '' Date: Thu Jan 26 20:50:43 2017 +1300 Minor tweaks to code '(#1196).' commit da00e951d4385c26478abbfe5a6845adfa82d0a4 Author: David Brooks '' Date: Thu Jan 26 20:03:13 2017 +1300 Update OpenSSL to version 1.0.2j '(#1113).' commit bfbc71c2d4760d0c7e876d01fa44cde87365fbe4 Author: David Brooks '' Date: Thu Jan 26 15:42:15 2017 +1300 Minor code tidy '(#1085).' commit deb2936ce87ee7ffacad2d9df0ea27fd297afe3e Author: David Brooks '' Date: Thu Jan 26 15:38:05 2017 +1300 Delete the correct PythonQt manager '(#1085).' commit 930a0580df19481163d7ff50954feb3a5cbcf821 Author: David Brooks '' Date: Thu Jan 26 15:23:05 2017 +1300 Make data storage and simulation classes available to Python via PythonQt wrappers '(#1085).' This requires wrapped classes to be QObjects with wrapped methods exposed as public slots and class names specified in full. commit 8f06db8c465b5ed5198017cb123db5c5c56c3c1a Author: David Brooks '' Date: Thu Jan 26 15:05:17 2017 +1300 Use a '`DataStoreArray`' class to manage numeric arrays '(#1085).' commit af236438028c038d9e45d087772c3064801dc871 Author: David Brooks '' Date: Thu Jan 26 14:48:33 2017 +1300 Upgrade zlib to version 1.2.11 '(#1193).' commit eaef17b9d8708a2c30cb66ed1c09a82e7efc08fe Merge: bdb188d31 53bb0d148 Author: David Brooks '' Date: Thu Jan 26 13:59:01 2017 +1300 Merge branch ''\''ssv_runcrash'\''' into pythonplugin commit bdb188d31b3d88b805d79dd251cee7854b317a4d Merge: c50319769 916f4b130 Author: David Brooks '' Date: Thu Jan 26 13:58:50 2017 +1300 Merge branch ''\''ssv_solverinterface'\''' into pythonplugin commit c50319769a687d89b2bf8f16169b386fe10da6f8 Merge: 5d5597584 caa708133 Author: David Brooks '' Date: Thu Jan 26 13:58:34 2017 +1300 Merge branch ''\''ssv_filename'\''' into pythonplugin commit 53bb0d14840a69e977fb77b91f787b4953c729c1 Author: David Brooks '' Date: Thu Jan 26 13:15:13 2017 +1300 Check that we have a large enough data store and a valid solver before starting a simulation '(#1200).' commit 916f4b1308d308a324961e01e048ba7295862cfa Author: David Brooks '' Date: Thu Jan 26 12:50:46 2017 +1300 Refactor code to find a 'simulation'\''s' solver interface '(#1198).' commit caa7081338c2f858ea3bdba1ee893e33bd337c4b Author: David Brooks '' Date: Thu Jan 26 12:35:49 2017 +1300 Add 'SingleCellViewSimulation::fileName()' method '(#1196).' commit 5d55975847da70dd5a8b0065d0694e919e8ae0ed Merge: 9f23659d2 a4f3f2dc0 Author: David Brooks '' Date: Thu Jan 26 10:51:28 2017 +1300 Merge branch ''\''master'\''' into pythonplugin commit 9f23659d2049a8d7314ca7d7e1b27378ea7f20c1 Author: David Brooks '' Date: Thu Jan 26 10:26:26 2017 +1300 Cleanup PythonQt '*before*' finalising Python in CTK Manager '(#1085).' commit ed4d048fba990123e73e31c9cbc5c46c6850c73e Author: David Brooks '' Date: Thu Jan 26 10:24:42 2017 +1300 Save and restore Python command history between sessions '(#1085).' commit c75c950a9335db2a58787c8b3024868c4df6ab04 Author: David Brooks '' Date: Thu Jan 26 10:23:18 2017 +1300 Get and set command history in a CTK window '(#1085).' commit 1e988dcc82825ac059f951c08b8f808a27323d20 Author: David Brooks '' Date: Thu Jan 26 10:20:36 2017 +1300 A PythonQt wrapper plugin for OpenCOR '(#1085).' commit eaa7d4b303e2a7c9a05bb603fe3139f8238da4d1 Author: Alan Garny '' Date: Wed Jan 25 18:45:04 2017 +0100 PMR Workspaces window: some work on staging/unstaging a file. commit fe128b5e134e51ff4f5d2026cfbf498297353c19 Author: Alan Garny '' Date: Wed Jan 25 18:39:56 2017 +0100 Some minor cleaning up. commit ad52b9169f33ab747027e30a695cea53f36d6821 Author: Alan Garny '' Date: Wed Jan 25 17:50:31 2017 +0100 PMR Workspaces window: some work on updating our GUI when folders/files are deleted. commit 9e81667130401ca6e6a40ffb54abc7c023604353 Author: Alan Garny '' Date: Wed Jan 25 17:34:28 2017 +0100 PMR Workspaces window: some work on updating our GUI when folders/files are deleted. commit e6a4c1c433cd9e0ab0fbf2a8bb7afccb562a9a97 Author: Alan Garny '' Date: Wed Jan 25 14:49:20 2017 +0100 Some minor cleaning up. commit e6ff1cee760a11ea8cd53f3e6ae1059b9c7c2caa Author: Alan Garny '' Date: Wed Jan 25 11:32:38 2017 +0100 PMR-related windows: 'don'\''t' show information/warning messages at startup. commit d27a53c1adec29eb6e00407ea67e0f69292b52ac Author: Alan Garny '' Date: Wed Jan 25 11:31:31 2017 +0100 Some minor cleaning up. commit 3088fb606cd6d8265a240ac3ba28a7155cef8695 Author: Alan Garny '' Date: Wed Jan 25 10:58:35 2017 +0100 PMR window: 'don'\''t' expand an exposure that is being cloned. commit 12d5f3a0ffbbd68bdaf0c9e7e855ea339bbf203a Author: Alan Garny '' Date: Wed Jan 25 10:53:21 2017 +0100 PMR support: make sure the workspace folder is properly tracked when cloning a workspace. commit 1501b3d17cb00614e1ef2d2441838b5b9aba707c Author: Alan Garny '' Date: Tue Jan 24 18:12:28 2017 +0100 PMR Workspaces window: 'don'\''t' regenerate a file icon every time a workspace gets refreshed. commit 357fc8418a6bc14572a1af87994977366b830ebe Author: Alan Garny '' Date: Tue Jan 24 18:01:08 2017 +0100 PMR Workspaces window: 'don'\''t' regenerate a file icon every time a workspace gets refreshed. commit cd0d2a3c6005abeb1f235d4d43ed1186b171db67 Author: Alan Garny '' Date: Tue Jan 24 17:48:59 2017 +0100 Some minor cleaning up. commit e6e9615580c3436e3d5707f0b558d017f99812ee Author: Alan Garny '' Date: Tue Jan 24 17:37:53 2017 +0100 PMR Workspaces window: 'don'\''t' regenerate a workspace folder icon every time it gets refreshed. Note: we need to do the same for file $'icons\342\200\246' commit ab19b797d55738435c2f3de0cd75fbc7484d97a7 Author: Alan Garny '' Date: Tue Jan 24 17:11:46 2017 +0100 PMR Workspaces window: some work on updating the GUI to reflect changing file node states. Now update the icon '(i.e.' 'status)' of the workspace folder. commit 6757f221adf64ff874292a698d2fa45549cd364b Author: Alan Garny '' Date: Tue Jan 24 16:33:11 2017 +0100 PMR Workspaces window: we want our timer to be active at all times, so that the status of a file can visually change whether OpenCOR is in the background or not. This is unlike for our FileManager class, for which there is no point to check things if OpenCOR is not active, etc. '(see' 'FileManager::startStopTimer()).' commit efcbf406a5ce6cba99484124acc81dd29749f764 Author: Alan Garny '' Date: Tue Jan 24 16:28:29 2017 +0100 PMR Workspaces window: some work on updating the GUI to reflect changing file node states. commit 5ed7919b7bb81abd3bf8f6d9688c3f7896764bc0 Author: Alan Garny '' Date: Tue Jan 24 16:26:34 2017 +0100 PMR support: update the status of an existing workspace file node that we are trying to add. commit f9b225a3e2955092a4695d155ab7bca85b11ce38 Author: Alan Garny '' Date: Tue Jan 24 14:41:57 2017 +0100 Some minor cleaning up. commit a055ca200f7c0fe0f22c2fc410db828198181c87 Author: Alan Garny '' Date: Tue Jan 24 14:38:25 2017 +0100 PMR Workspaces window: make sure that a file node has a correct full name. commit 0c1d18152351807675d7ecefc1df1e523cff4751 Author: Alan Garny '' Date: Tue Jan 24 14:11:35 2017 +0100 Some minor cleaning up. commit 68a571f66ab0248d579fb188516c3ec933df0337 Author: Alan Garny '' Date: Tue Jan 24 14:11:23 2017 +0100 PMR Workspaces window: made sure that we do the right thing when a workspace has been cloned. commit c7c5a193303c9f76ad29534c441e178a57993805 Author: Alan Garny '' Date: Tue Jan 24 09:48:56 2017 +0100 Some minor cleaning up. commit 939e36e6b9d10d3d023a86c033a18b96c6cb63b7 Author: Alan Garny '' Date: Tue Jan 24 09:26:12 2017 +0100 PMR support: reuse a 'workspace'\''s' file nodes rather than recreate them every time its status gets refreshed. Will need to handle the case of a file being $'deleted\342\200\246' commit 0d7902580b7564fe2d84f9cc48c95af72fa62cc6 Author: Alan Garny '' Date: Tue Jan 24 09:25:10 2017 +0100 Some minor cleaning up. commit 282e29d26323b081be41f72bc2357d4f54040f9d Author: Alan Garny '' Date: Tue Jan 24 09:13:47 2017 +0100 Some minor cleaning up. commit 41417a06f297451d154b5ebfbd16e44fe6ffe1a4 Author: Alan Garny '' Date: Tue Jan 24 09:12:59 2017 +0100 PMR Workspaces window: make sure that the Clone menu item is only available for non-cloned owned workspaces. commit 519172bdeb4464a270545d466423c497dc81f9e3 Author: Alan Garny '' Date: Mon Jan 23 20:51:31 2017 +0100 PMR support: make sure that a cloned workspace gets its status updated straightaway '(rather' than being updated by someone else, e.g. the PMR Workspaces 'window'\''s' 'timer).' commit f91696627cb637322600188b5ff863aacaa8a95d Author: Alan Garny '' Date: Mon Jan 23 20:47:52 2017 +0100 PMR support: make sure that a cloned workspace gets its status updated straightaway '(rather' than being updated by someone else, e.g. the PMR Workspaces 'window'\''s' 'timer).' commit 8f41578e9da625ef32a649141f73ceee9b51204d Author: Alan Garny '' Date: Mon Jan 23 20:45:52 2017 +0100 Some minor cleaning up. commit d2b09031de3b6f61b50dc8cf3d6da008936f1a72 Author: Alan Garny '' Date: Mon Jan 23 20:09:14 2017 +0100 Reverted commit db774aa '(it' prevented our cloned workspaces from being 'populated).' commit bf972a1d5d5926a20cb4ebb7112c25fdbd9d65ce Author: Alan Garny '' Date: Mon Jan 23 19:31:59 2017 +0100 Some minor cleaning up. commit 76bac28e26469d72eea6430e78054c128f6f5437 Author: Alan Garny '' Date: Mon Jan 23 19:22:45 2017 +0100 Some minor cleaning up. commit db774aaaeb3839198a772b998f399c7e0f36814e Author: Alan Garny '' Date: Mon Jan 23 19:21:09 2017 +0100 Some minor cleaning up. commit eaed11ceae687e590793c8e065c50b96055b4a93 Author: Alan Garny '' Date: Mon Jan 23 19:12:10 2017 +0100 PMR Workspaces window: now clone 'a(n' 'owned)' workspace in the existing tree view folder '(rather' than creating a new one as used to be the case 'before).' Note that although the code does the right thing, it will still probably crash OpenCOR since 'PmrWorkspace::refreshStatus()' regularly recreates $'mRootFileNode\342\200\246' commit 39acb5498d1c9ca060983afe09e0682f46628a77 Author: Alan Garny '' Date: Mon Jan 23 18:52:35 2017 +0100 Some minor cleaning up. commit 9e8321394778479534f3b6af0b36b1af8a2ee991 Author: Alan Garny '' Date: Mon Jan 23 18:15:40 2017 +0100 Some minor cleaning up. commit 1a6582830c8183f1c4fb7a29f7dbaf42ea116962 Author: Alan Garny '' Date: Mon Jan 23 17:24:08 2017 +0100 Some minor cleaning up. commit e2eb542c3e0d400e37e9c49ca8755225be8cf03b Author: Alan Garny '' Date: Mon Jan 23 16:37:47 2017 +0100 Some minor cleaning up. commit b51d295028a61838b6d0816f2ef96bcbc509e7d5 Author: Alan Garny '' Date: Mon Jan 23 15:26:05 2017 +0100 PMR Workspaces window: rely on our global PMR Workspace manager to know when a workspace has been cloned or synchronized. Until now, we were relying on the PMR Web service, but that one is not global, meaning that if we clone a workspace from the PMR window, then the PMR Workspace window $'won\342\200\231t' know about $'it\342\200\246' that is, unless we rely on our global PMR Workspace $'manager\342\200\246' commit 7918fe71308458ac0167b0b3503f8c9596e4e15b Author: Alan Garny '' Date: Mon Jan 23 15:03:42 2017 +0100 Some minor cleaning up. commit b860767f83e846453611470d32e85bc3cdcc65fe Author: Alan Garny '' Date: Mon Jan 23 14:41:20 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 1f9bdef0af743f1ab895b6c125caeaeddf64ba13 Author: Alan Garny '' Date: Mon Jan 23 14:18:25 2017 +0100 PMR Web service: let people know when a workspace has been cloned. For some reasons, this $'wasn\342\200\231t' done while we do let people know when a workspace has been $'synchronised\342\200\246' commit a4267faecc12d02fbbfac38276693c23cac97122 Author: Alan Garny '' Date: Mon Jan 23 13:57:53 2017 +0100 PMR Workspaces window: some minor refactoring. commit a4f3f2dc07bc0e5230d19eb2ab919232bf760974 Author: Alan Garny '' Date: Mon Jan 23 13:38:05 2017 +0100 Slight update to tour developer documentation '[ci' 'skip].' commit 7b9d7feebba45580fa0b5b4c4356080db3bce0d4 Merge: 277c55a8e f95d37b72 Author: Alan Garny '' Date: Mon Jan 23 13:28:26 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit f95d37b72aeedd21992c3652e84a0ade5080a0e2 Author: Alan Garny '' Date: Mon Jan 23 13:26:12 2017 +0100 KaTeX: upgraded to version 0.7.1 '(closes' '#1195).' commit 277c55a8eb7c404dab55e3a9d4ca5c1b0cf75d1d Author: Alan Garny '' Date: Sat Jan 21 19:04:41 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 38ba67dce40730bc4f8bdd5ea6a493074f97ec78 Author: Alan Garny '' Date: Sat Jan 21 19:03:08 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 5c58dbadb4a0c205271d259621e492adc2006bf3 Author: Alan Garny '' Date: Sat Jan 21 18:59:32 2017 +0100 Some minor cleaning up. commit b4931b595636993daf442d36e23db363ad3c84d5 Author: Alan Garny '' Date: Sat Jan 21 17:40:11 2017 +0100 PMR Workspaces window: some minor refactoring. commit b49ae4ef7a52f0e10fdb26064d72eacff6eb1ef3 Author: Alan Garny '' Date: Sat Jan 21 15:48:52 2017 +0100 PMR Workspaces window: removed our support of the File Handling interface. Indeed, we $'don\342\200\231t' automatically refresh the active workspace, but all of them. So, we $'don\342\200\231t' '(or' $'shouldn\342\200\231t,' at this 'stage)' need to check whether a file has been reloaded or renamed. commit 06fca1e77fbaf85098807db5a7bb6ad989daf632 Author: Alan Garny '' Date: Sat Jan 21 14:50:13 2017 +0100 Some minor cleaning up. commit 61735d0dab7268169be4f98e642b5276f296bb4d Author: Alan Garny '' Date: Sat Jan 21 14:49:51 2017 +0100 PMR Workspaces window: some work on staging/unstaging a file. Things crash when trying to show the context menu since we are refreshing our workspaces every second, resulting in file node information being deleted and $'recreated\342\200\246' commit bb238c779b3249283e7e5fc0c8714df57477ce45 Author: Alan Garny '' Date: Sat Jan 21 11:48:49 2017 +0100 Some minor cleaning up. commit 5d9bb79678590c2ad6d242d3ee41579b59119c5c Author: Alan Garny '' Date: Fri Jan 20 15:42:07 2017 +0100 Windows 'doesn'\''t' accept ''\''?'\''' In a file name... commit d102c84555f1ce2c0c6b0ef4653268fa5a2cfaad Author: Alan Garny '' Date: Fri Jan 20 15:37:20 2017 +0100 PMR Workspaces window: keep track of an 'item'\''s' file node, if any. commit 5c6b0c5dd899ee7d31d3daab89dd105d0d3a4e2a Author: Alan Garny '' Date: Fri Jan 20 15:27:06 2017 +0100 PMR support: fixed another memory leak. commit 4d16d7fa446ef02841cb283bf7a8d3297aae5c15 Author: Alan Garny '' Date: Fri Jan 20 15:21:28 2017 +0100 Some minor cleaning up. commit 763e4ddd1e641cdbae0fa88f8c02d35600e7ac61 Author: Alan Garny '' Date: Fri Jan 20 13:32:53 2017 +0100 Some minor cleaning up. commit 13a91eca05ff811705a305d2223b6113cc2a2318 Author: Alan Garny '' Date: Fri Jan 20 13:20:25 2017 +0100 PMR Workspaces window: can now show the overall status of a workspace. commit a2cc761a62688f5021861831804b2f0d3d8784dc Author: Alan Garny '' Date: Fri Jan 20 09:46:32 2017 +0100 Some minor cleaning up. commit 118c87ec56eaad720efdcb8908e23e7b5ab40f67 Author: Alan Garny '' Date: Thu Jan 19 18:48:02 2017 +0100 PMR Workspaces window: can now show some information about a given workspace. commit 3e3b731e84f60618251fef3f8a04fb22ea71ce9b Author: Alan Garny '' Date: Thu Jan 19 18:35:26 2017 +0100 Some minor cleaning up. commit 1366664ef90c9ab31ddc44dd7cfba81fd105ab4c Author: Alan Garny '' Date: Thu Jan 19 18:26:05 2017 +0100 Some minor cleaning up. commit f9607d58712d8672f33ae4487b91893f82a8d189 Author: Alan Garny '' Date: Thu Jan 19 18:20:55 2017 +0100 PMR Workspaces window: some work on showing some information about a given workspace. commit 30de0f04b40dc8d2c0e1ce47eb8f582c7947eaba Author: Alan Garny '' Date: Thu Jan 19 18:18:58 2017 +0100 Some minor cleaning up. commit d87c3c2d0984fea11b16cb4a62fca158ebf13fdc Author: Alan Garny '' Date: Thu Jan 19 18:15:29 2017 +0100 Some minor cleaning up. commit 7c213ca69d3529167198ad3e5b8aefb69c1f26a7 Author: Alan Garny '' Date: Thu Jan 19 17:26:04 2017 +0100 PMR Workspaces window: can show a workspace on the computer, as well as copy its path to the clipboard. commit e6f208aabf7f11d984c2bca6f348c0128d39ae11 Author: Alan Garny '' Date: Thu Jan 19 17:12:36 2017 +0100 PMR Workspaces window: clear our tree view model as late as possible. This is to avoid our tree view from looking empty for a split second when reloading our list of workspaces. commit 4ddb7342e4111c6a3b836587f98865f97d849a5e Author: Alan Garny '' Date: Thu Jan 19 16:58:48 2017 +0100 PMR and PMR Workspaces windows: added an icon for our clone action. commit 84c14c8a272b15dd0fa9520463bda47f120f13fa Author: Alan Garny '' Date: Thu Jan 19 16:43:05 2017 +0100 Some minor cleaning up. commit 6f291feed89d446f9636c49843c522598190891a Author: Alan Garny '' Date: Thu Jan 19 16:24:34 2017 +0100 Some minor GUI improvements. commit 5db582e81da960c04b5bc293f61f21a2a5ea3625 Author: Alan Garny '' Date: Thu Jan 19 16:20:01 2017 +0100 Some minor cleaning up. commit 9f48bdcd1c64c269407b6ca2ed83c482d613d614 Author: Alan Garny '' Date: Thu Jan 19 16:01:02 2017 +0100 PMR Workspaces window: now show the Git status of a file. commit 160147f43837a21097fac55cb20a6538613d5a98 Author: Alan Garny '' Date: Thu Jan 19 15:11:35 2017 +0100 Some minor cleaning up. commit c38e326dff4544533d250ebbde39c82f94526d5b Author: Alan Garny '' Date: Thu Jan 19 14:55:44 2017 +0100 Some minor cleaning up. commit 2ffd3d69bde5b2342694b1877dae4f5344d2c8e2 Author: Alan Garny '' Date: Thu Jan 19 14:36:53 2017 +0100 PMR support: some cleaning up. commit d57dd1bd062fb3f56b331b08c67c79d1cad7f0d0 Author: Alan Garny '' Date: Thu Jan 19 12:54:49 2017 +0100 Some minor cleaning up. commit fc44ee67d72d50852e8294b89b8dc20df873e8ca Author: Alan Garny '' Date: Thu Jan 19 11:47:23 2017 +0100 PMR support: fixed a memory leak. commit f2d3e88d320dde4611b79f80a9e069e0a77743a6 Author: Alan Garny '' Date: Thu Jan 19 11:44:37 2017 +0100 PMR Workspaces window: some work on refreshing a given workspace. commit ced80b70a01c613fc921a84ef7e6b10f421272e0 Author: Alan Garny '' Date: Thu Jan 19 11:35:28 2017 +0100 PMR Workspaces window: some minor refactoring. commit e8a85fdee2b9f3b8c7b9940433fb7aee1d1fbd0b Author: Alan Garny '' Date: Thu Jan 19 11:32:36 2017 +0100 Some minor cleaning up. commit 76d65187b97af384d4a97a39207ca040b7b16eec Author: Alan Garny '' Date: Thu Jan 19 11:31:44 2017 +0100 Some minor cleaning up. commit 635124ea735aca22526ab3294a89b3b142c1c489 Author: Alan Garny '' Date: Thu Jan 19 11:13:34 2017 +0100 Some minor cleaning up. commit ae77b6e167ee618a26f56019477533dcd03470d3 Author: Alan Garny '' Date: Thu Jan 19 11:04:38 2017 +0100 PMR Workspaces window: check our timer when updating our GUI. commit e90326e6b72e5f7c902ef6e366e160f98ff96c40 Author: Alan Garny '' Date: Thu Jan 19 11:04:12 2017 +0100 Some minor cleaning up. commit b3c9ad95bab481073b63f486185af2c8e3ef53fb Author: Alan Garny '' Date: Thu Jan 19 10:04:16 2017 +0100 PMR Workspaces window: some cleaning up. commit 7e787ee717d6c8c9be71c19d8701e7a8de4ac223 Author: Alan Garny '' Date: Thu Jan 19 10:00:32 2017 +0100 PMR Workspaces window: can now clone an owned workspace. $'It\342\200\231s' not perfect though. For example, to clone an owned workspace will result in a new entry in the tree view widget. That entry will '(rightly)' disappear if we close and reopen OpenCOR. commit 331898c8077b22c1eccf3e4564e5f78ff9438751 Author: Alan Garny '' Date: Wed Jan 18 18:30:06 2017 +0100 Some minor cleaning up. commit 4b4566044b53d64581db07c3a8769a9d8d0ef39a Author: Alan Garny '' Date: Wed Jan 18 18:29:32 2017 +0100 Some minor cleaning up. commit 431578ca2d3399d82028b3d47b811a9c0fa91018 Author: Alan Garny '' Date: Wed Jan 18 18:16:16 2017 +0100 PMR Workspaces window: added a cloning action. commit 225b7cfc24e52bab38a574df958b74f9660f0ca8 Author: Alan Garny '' Date: Wed Jan 18 18:15:41 2017 +0100 Some minor cleaning up. commit e4c8d81227f25d811ff59457346d8a57ea4425fb Author: Alan Garny '' Date: Wed Jan 18 18:09:44 2017 +0100 Some minor cleaning up. commit 9fa60918b120317c0956d2baefaf2e7548d39277 Author: Alan Garny '' Date: Wed Jan 18 17:58:58 2017 +0100 $'\020Some' minor cleaning up. commit 4580da7418659ae4d6a96a79cd7c6091d20b29db Author: Alan Garny '' Date: Wed Jan 18 17:51:35 2017 +0100 PMR Workspaces window: add a workspace in the right place in our tree view widget. commit bda9a1289bf998d1a376596a829147fcc90429dc Author: Alan Garny '' Date: Wed Jan 18 17:43:12 2017 +0100 PMR Workspaces window: now add to our GUI a workspace that has been cloned from the PMR window. commit b1601086536cca157b06c2ce20a350c533debfa1 Author: Alan Garny '' Date: Wed Jan 18 17:42:12 2017 +0100 Some minor cleaning up. commit 5ee923e0dd23efde44c8af5674abf7b5cdec93d8 Author: Alan Garny '' Date: Wed Jan 18 17:41:30 2017 +0100 Some minor cleaning up. commit cb226af2e1e7fd30bf135d5b28fe776a0fe06fd0 Author: Alan Garny '' Date: Wed Jan 18 17:31:25 2017 +0100 PMR Workspaces window: some minor refactoring. commit 8925d1cdc379fbbd95c099c982ac51c483e29b96 Author: Alan Garny '' Date: Wed Jan 18 16:57:17 2017 +0100 PMR window: got rid of mShowHideExposureFilesAction. Indeed, anyone using a tree view should know that they can expand folder $'items\342\200\246' commit c16cc3c2f6c9158cee8d5106bd365b2866522be9 Author: Alan Garny '' Date: Wed Jan 18 16:40:47 2017 +0100 PMR Workspaces window: some minor cleaning up. commit 0557e06dc1fd7aa857144ff70b70ef70a79ec86e Author: Alan Garny '' Date: Wed Jan 18 14:27:32 2017 +0100 PMR Workspaces window: some minor cleaning up. commit f26a230f9dadbdf3686e4daf73d2266e8a2bb365 Author: Alan Garny '' Date: Wed Jan 18 13:44:54 2017 +0100 PMR Workspaces window: updated our 'startStopTimer()' method. commit 9b7061f7382c852e0599c738f5d23d870aaf4b39 Author: Alan Garny '' Date: Wed Jan 18 13:38:42 2017 +0100 PMR Workspaces window: some minor refactoring. commit b8705b18293e534372688610df7439d6efcb2d44 Author: Alan Garny '' Date: Wed Jan 18 13:21:01 2017 +0100 PMR Workspaces window: some minor refactoring. commit 83c68f9d0c2c4961311b596fa432ea1e41188fc3 Author: Alan Garny '' Date: Wed Jan 18 11:30:37 2017 +0100 PMR Workspaces window: replaced the Plus icon '(for' creating a new 'workspace)' with a Folder icon overlaid with a Plus icon. commit 0be5f2a337a0ee8201d1c2881b6777dda0982f9f Author: Alan Garny '' Date: Wed Jan 18 10:37:28 2017 +0100 Some minor GUI improvements. commit 831e17c6949cfb83292da80582b469a72d06f307 Author: Alan Garny '' Date: Tue Jan 17 19:08:53 2017 +0100 Improved our creation of overplayed icons. commit e8c97c976319ef4d88c8635b2fa17f63d300f81e Author: Alan Garny '' Date: Tue Jan 17 19:02:50 2017 +0100 Some minor cleaning up. commit 3b7a4f48aa5b3d12ea04a15da34e48568a7242ba Author: Alan Garny '' Date: Tue Jan 17 18:55:57 2017 +0100 Improved the way we use the 'Core::overlayedIcon()' method. commit 607fb1222dccf96fe5906511eda27e15791f592e Author: Alan Garny '' Date: Tue Jan 17 18:11:10 2017 +0100 Some minor cleaning up. commit f062928c996f0b24d8647f129c8e1e5ab37d8b6e Merge: 2624d0464 cd50dbef0 Author: Alan Garny '' Date: Tue Jan 17 18:06:28 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit cd50dbef02cd21aa0f03e6061cd034eaacaf8751 Author: Alan Garny '' Date: Tue Jan 17 18:06:08 2017 +0100 Some minor cleaning up. commit 2624d046426bc7bb00b3585eb64551dae8a9ed73 Author: Alan Garny '' Date: Tue Jan 17 17:41:49 2017 +0100 PMR Workspaces window: now show the correct expanded folder icon for an owned workspace. commit a3863e349594427147824b2d742f142c256fb3c1 Author: Alan Garny '' Date: Tue Jan 17 16:57:24 2017 +0100 Get the folder icon we are after on Windows. commit 43032a8535848b752c2ada369133359572ac01a5 Author: Alan Garny '' Date: Mon Jan 16 19:22:57 2017 +0100 PMR Workspaces window: make sure that the context menu is indeed context dependent. commit 4edf1123c1b36bd5c291261c380690515e015d76 Author: Alan Garny '' Date: Mon Jan 16 19:22:28 2017 +0100 Some minor cleaning up. commit fec924a26509c81564c35af8932d05da89cfb9d3 Author: Alan Garny '' Date: Mon Jan 16 19:15:43 2017 +0100 PMR Workspaces window: can now open one or several workspace files using the keyboard. commit 652f23140395d38660f583449377929f5c1190fa Author: Alan Garny '' Date: Mon Jan 16 19:15:20 2017 +0100 Some minor cleaning up. commit 4e41bf4defc37d452886646d1f61fa9932b50f06 Author: Alan Garny '' Date: Mon Jan 16 19:05:21 2017 +0100 PMR Workspaces window: can now open a workspace file by double clicking on it. commit 82c9cfdf47f9bae023a2d9e941a9a2c17a3d9ff7 Author: Alan Garny '' Date: Mon Jan 16 19:04:59 2017 +0100 Some minor cleaning up. commit 137f8230101c22f478bea1102cb8f8e401562e58 Author: Alan Garny '' Date: Mon Jan 16 18:49:59 2017 +0100 Fixed a small problem with 'PmrWorkspaceFileNode::addChild().' commit 6a37d8fed4449835e3ca07339551f65c5442ac8b Author: Alan Garny '' Date: Mon Jan 16 18:48:51 2017 +0100 Some minor cleaning up. commit 2367c6914eed1bbfae60eac5f42896032cc29612 Author: Alan Garny '' Date: Mon Jan 16 18:48:38 2017 +0100 Some minor cleaning up. commit 8b1a301342c8f7e1a6abdca4d179669206dd28e6 Author: Alan Garny '' Date: Mon Jan 16 17:37:26 2017 +0100 Some minor cleaning up. commit 9ab122c5f58c2c6dad7abc69dcfa63f8960377e1 Author: Alan Garny '' Date: Mon Jan 16 17:35:07 2017 +0100 PMR Workspaces window: now fully populate a workspace. However, we need to $'\342\200\230fix\342\200\231' things when a workspace contains folders/sub-folders. commit 207cfa2ed10cba415083755e32d195a01d1c44ab Merge: c08600bf4 981921011 Author: Alan Garny '' Date: Mon Jan 16 15:54:54 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 9819210112b6a5ddc69397c60f4e8000363c8eea Merge: 07ab47cba 8c4a74ea5 Author: Alan Garny '' Date: Mon Jan 16 15:53:24 2017 +0100 zlib: upgraded to version 1.2.11 '(closes' '#1193).' commit 8c4a74ea52b8ab667c688f9ff013c8b4a3368e31 Author: Alan Garny '' Date: Mon Jan 16 15:18:30 2017 +0100 zlib: some work on upgrading to version 1.2.11 '(#1193).' commit b09f5121b6ea06c5d01754245b464769f1cab63f Author: Alan Garny '' Date: Mon Jan 16 15:11:00 2017 +0100 zlib: some work on upgrading to version 1.2.11 '(#1193).' commit 46dcbdc7ac69f29d30f0d215a62cd809ea5bd7b3 Author: Alan Garny '' Date: Mon Jan 16 15:07:44 2017 +0100 zlib: some work on upgrading to version 1.2.11 '(#1193).' commit c08600bf4c37f4ece23a97d095005dd3462cd105 Author: Alan Garny '' Date: Mon Jan 16 14:37:23 2017 +0100 Now differentiate ''\''normal'\''' workspaces from owned ones. Slight improvement for Windows. commit a926aca4c07c15da61833a5519c61f9a03f18cb0 Author: Alan Garny '' Date: Mon Jan 16 14:35:12 2017 +0100 Now differentiate ''\''normal'\''' workspaces from owned ones. Slight improvement for Windows. commit 224dc90a6dff4417b271e031a1cf309153268e8a Author: Alan Garny '' Date: Mon Jan 16 14:34:45 2017 +0100 Now differentiate ''\''normal'\''' workspaces from owned ones. Slight improvement for Windows. commit adaf029cd2864fe899b00b14ff352516d060386c Author: Alan Garny '' Date: Mon Jan 16 14:20:36 2017 +0100 Now differentiate ''\''normal'\''' workspaces from owned ones. commit 87b49e30c3afd1854922726c020e9e24b5872eab Author: Alan Garny '' Date: Mon Jan 16 14:20:02 2017 +0100 Some minor cleaning up. commit 9b299e5de5566490932a1e30f4d1438f2ed66677 Author: Alan Garny '' Date: Mon Jan 16 14:19:44 2017 +0100 Added new signatures for our Core 'overlayedIcon()' method. commit c3994e6fcfe8b949432576ecb48195d58afac7bf Author: Alan Garny '' Date: Sun Jan 15 10:07:27 2017 +0100 PMR window: can now show/hide exposure files from the context menu. commit e063bc5b9ceaf19f31dffca7436d6fdf027e136b Author: Alan Garny '' Date: Sat Jan 14 00:02:53 2017 +0100 File Browser window: use a more suitable Home icon. The one we were using was actually right, $'it\342\200\231s' just that since we now use system folder icons, the Home icon looked $'\342\200\230wrong\342\200\231' hence we now use a $'\342\200\230proper\342\200\231' Home icon. commit 02710d07d830dccd3052c78fb12a1db2eb544d56 Author: Alan Garny '' Date: Fri Jan 13 23:51:45 2017 +0100 File Organiser window: make sure that our New Folder icon looks right on Windows. commit 7ef4bb44baaa443f880ff77429902c20af011ee6 Author: Alan Garny '' Date: Fri Jan 13 23:51:07 2017 +0100 Some minor cleaning up and an additional signature for 'iconDataUri().' commit c6295188c72ca4a56a12bdea61eb930c7a586daa Author: Alan Garny '' Date: Fri Jan 13 20:40:46 2017 +0100 File Organiser window: created a '"new' 'folder"' icon based on the system '"folder"' icon. commit 245d29ebf980d1081f15f37c651b6d80010fcd71 Author: Alan Garny '' Date: Fri Jan 13 20:37:14 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 280c50fa173c9fc655156a7736d43b97ac3e25c4 Author: Alan Garny '' Date: Fri Jan 13 19:40:31 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit e7dda849f8ac0ec4b02c42ecd6bc266159938c85 Author: Alan Garny '' Date: Fri Jan 13 19:37:38 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit e855ee158a8da7a60fa0c5e2c5ccc49dfd130873 Author: Alan Garny '' Date: Fri Jan 13 19:37:18 2017 +0100 Some minor cleaning up. commit a734491adb32fb449ab83ae74551dea108b88816 Author: Alan Garny '' Date: Fri Jan 13 19:37:01 2017 +0100 PMR window: allow one or several items to be viewed in PMR. commit b06fd819f7e5025c15b2b97cc08242291c83b29d Author: Alan Garny '' Date: Fri Jan 13 19:26:51 2017 +0100 PMR window: allow one or several exposure files to be opened by pressing the RETURN key. commit c61c378347fc8aafb94c53edda3bef40603dd9ef Author: Alan Garny '' Date: Fri Jan 13 19:23:22 2017 +0100 File Organiser window: some minor cleaning up. commit c19807fc0442197ea1f721e7d6905fb86e7e3f63 Author: Alan Garny '' Date: Fri Jan 13 19:07:07 2017 +0100 File Organiser window: some minor refactoring. commit 2a97205278687df8494240995e5406fd6082664b Author: Alan Garny '' Date: Fri Jan 13 18:54:36 2017 +0100 File Organiser window: some minor refactoring. commit aac37515a24e069395c533efdfc6b71bb1377caa Merge: 06251d941 07ab47cba Author: Alan Garny '' Date: Fri Jan 13 18:32:39 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 07ab47cbafdc85fdf11e99036bd60db074ae6ae4 Author: Alan Garny '' Date: Fri Jan 13 18:32:18 2017 +0100 File Organiser window: make use of QFileIconProvider '[ci' 'skip].' commit 06251d9416489b457dc3523b2738d0e60b296c93 Author: Alan Garny '' Date: Fri Jan 13 17:37:11 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 197d5240004599328e8a607f56c015f7b04988b4 Author: Alan Garny '' Date: Fri Jan 13 17:24:52 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 8d4e29d520b50837d1d9b668152851d68815a343 Author: Alan Garny '' Date: Fri Jan 13 17:08:54 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. To clear our model just before '(re)populating' it is critical since before that we do some stuff with our PMR service that may require emitting signals. In other words, to clear our model as we used to resulted in our tree view showing up as empty for a split second when refreshing our workspaces. commit 1e8f8c73e2b6910afeed3214f0c003c1056c7dbf Author: Alan Garny '' Date: Fri Jan 13 17:04:05 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 5ae91f6d6e6f7be064766cb0df3fd7a3270105ba Author: Alan Garny '' Date: Fri Jan 13 16:37:55 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 65d027af9080c6fa124b5e97e4516852a2e94c62 Author: Alan Garny '' Date: Fri Jan 13 16:37:44 2017 +0100 Some minor cleaning up. commit 44e86b17924df3addcc3663331dfda2dc40c69f0 Author: Alan Garny '' Date: Fri Jan 13 16:37:30 2017 +0100 Some minor cleaning up. commit 21d196adb4a6cd1ebcc1e900ac77e4a9c79f0b3f Author: Alan Garny '' Date: Fri Jan 13 16:36:36 2017 +0100 Some minor refactoring. commit 4d96987178f54c0f55ff88963cc6e1901cfb5e80 Author: Alan Garny '' Date: Fri Jan 13 16:14:32 2017 +0100 PMR-related windows: account for commit 55ec524. commit 55ec5242902aae2e667b75ef372cf25eb80bd896 Merge: 936f899ae ded56dc5c Author: Alan Garny '' Date: Fri Jan 13 16:07:17 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit ded56dc5c8704f71105f66fede4a4b1e5e2dcee6 Author: Alan Garny '' Date: Fri Jan 13 16:06:36 2017 +0100 Revert '"Tree' view widget: some minor GUI improvements '[ci' 'skip]."' This reverts commit 373221e3df5b24228d929b2ab1ef29f045a6d838. Indeed, this was causing the font size of headers to be slightly 'bigger…!?' commit 936f899aeafdcdf381eb6b73066bd082d02e52cc Author: Alan Garny '' Date: Fri Jan 13 15:46:26 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 20a3a3cedb0eaae4c1c9956c317759c0e9da58fa Author: Alan Garny '' Date: Fri Jan 13 15:44:24 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 44d884d934ff9536749bbbf4d1ca8b56d472a668 Author: Alan Garny '' Date: Fri Jan 13 15:35:53 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 4f22171cee7410bd95f1d02a6cd0bafc0d7c27cf Author: Alan Garny '' Date: Fri Jan 13 15:15:45 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 5ca324247b43f646c39166e89457b043179c4d57 Author: Alan Garny '' Date: Fri Jan 13 15:07:21 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit 945408f33fd97eb9a62ec2cbdc7dcf4891a9a83d Author: Alan Garny '' Date: Fri Jan 13 14:52:12 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit be094d2176040e2146a1282d3104d9bb6e3a0fe8 Author: Alan Garny '' Date: Fri Jan 13 14:24:25 2017 +0100 PMR Workspaces window: some work on our new GUI implementation. commit d53cad039770fa02c59d524ae4e7ff2fa53d44ee Author: Alan Garny '' Date: Fri Jan 13 13:59:05 2017 +0100 PMR Workspaces window: got rid of the HTML template. commit 1b4db185595477291d5f9de879a81c4d8c6e738a Author: Alan Garny '' Date: Fri Jan 13 13:29:16 2017 +0100 PMR Workspaces window: show context-based user messages. commit aacb4dc08f2a65a91a7f4e4fef029bd4e65686d1 Author: Alan Garny '' Date: Fri Jan 13 12:38:18 2017 +0100 PMR Workspaces window: starting to use both a UserMessageWidget and TreeViewWidget object. commit ca62cfeb01f47222ea7c1154e78cd97adc72f857 Author: Alan Garny '' Date: Fri Jan 13 11:52:46 2017 +0100 Some minor cleaning up. commit ab159d45f871e46e154eb700f9fd409cfc5e5b70 Author: Alan Garny '' Date: Fri Jan 13 11:50:15 2017 +0100 PMR Workspaces window: started work on not using a Web viewer. commit 849cbeaf33a2a06278eec9cfbc1ba07bca3528ff Author: Alan Garny '' Date: Fri Jan 13 10:03:05 2017 +0100 Some minor cleaning up. commit 6f5d633f6dd79cdc9fb952bc23c8396a40a3fc51 Author: Alan Garny '' Date: Fri Jan 13 09:41:37 2017 +0100 PMR window: some improvements with regards to our context menu. commit 3b871974366cf75a7f69d8b3332202cf01cae2e9 Author: Alan Garny '' Date: Fri Jan 13 09:33:13 2017 +0100 PMR window: in fact, we 'don'\''t' need a ''\''fancy'\''' tool tip for exposures / exposure files. commit 5cb0761d712e29d58bff1a62feee277141f9f5d7 Author: Alan Garny '' Date: Thu Jan 12 18:59:03 2017 +0100 Some minor cleaning up. commit 91db036f510ff7d4e517f5f327fb0e2897b317a3 Merge: a9c030a58 f8f4c28e4 Author: Alan Garny '' Date: Thu Jan 12 18:47:25 2017 +0100 New PMR window '(part' of our work on issue '#1141).' commit f8f4c28e470c3d1ceafd9234b7b2541f0818dcee Merge: a690e1ba6 a9c030a58 Author: Alan Garny '' Date: Thu Jan 12 18:40:56 2017 +0100 Merge branch ''\''issue1141'\''' into newpmrwindow commit a690e1ba6e62b4aec9db4a8d39bcacf84682e19f Author: Alan Garny '' Date: Thu Jan 12 18:36:29 2017 +0100 PMR window: nicely improved the layout of an 'item'\''s' tool tip. commit 5c9dd9fb9a9dcbf7901ebd9765532aee8bce8cf6 Author: Alan Garny '' Date: Thu Jan 12 17:39:51 2017 +0100 PMR window: some minor cleaning up. commit 4c3cf7b0d51c5f5bade63fc8672e4f2f2a2d48d5 Author: Alan Garny '' Date: Thu Jan 12 17:33:36 2017 +0100 PMR window: make sure the focus is given back to the correct widget. commit e8382b3c6bc9015155e34df75c19b70ab63e4526 Author: Alan Garny '' Date: Thu Jan 12 16:56:50 2017 +0100 PMR window: can now copy a URL to the clipboard. commit a6e55e34b2345e6a994df11514afa58ed3b8c92a Author: Alan Garny '' Date: Thu Jan 12 16:30:03 2017 +0100 PMR window: improved the tool tip and context menu. commit 45f9e6db5abfebd3c6ea7f09de2dd7dbafb22f67 Author: Alan Garny '' Date: Thu Jan 12 15:54:12 2017 +0100 PMR window: some minor cleaning up. commit c5da92620e04011bbcf8bdc4b759f164e807df3f Merge: 662a35907 373221e3d Author: Alan Garny '' Date: Thu Jan 12 15:53:25 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit a9c030a5864672713b12670fe9439620cdc655cb Merge: f231b3626 373221e3d Author: Alan Garny '' Date: Thu Jan 12 15:52:55 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 373221e3df5b24228d929b2ab1ef29f045a6d838 Author: Alan Garny '' Date: Thu Jan 12 15:52:41 2017 +0100 Tree view widget: some minor GUI improvements '[ci' 'skip].' commit 662a3590760941ebd8fe66238f8328fa76967608 Author: Alan Garny '' Date: Thu Jan 12 15:19:37 2017 +0100 PMR window: some minor cleaning up. commit d82a350ab37c97b16b5875d176703d9f88547a83 Author: Alan Garny '' Date: Thu Jan 12 15:12:54 2017 +0100 PMR window: change the icon of an exposure based on whether its expanded/collapsed. commit e9ad24dfafb7ce552d0d63f8b80979c5cebb8a01 Author: Alan Garny '' Date: Thu Jan 12 14:51:37 2017 +0100 PMR window: some minor GUI improvement. commit f624c711656999c5d47275550549b46de7e61650 Merge: 30ba45790 30b3b29a9 Author: Alan Garny '' Date: Thu Jan 12 14:23:54 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit f231b3626706fedc889476a64095947f9e1f27a7 Merge: 898896046 30b3b29a9 Author: Alan Garny '' Date: Thu Jan 12 14:23:34 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 30b3b29a9e8dd4ad72ec26ecfd166ec22ba0e9a1 Author: Alan Garny '' Date: Thu Jan 12 11:35:10 2017 +0100 User message widget: fixed a small issue with our scaling '[ci' 'skip].' commit 8522d2ce8c8ba8f3a017db6f309c46204a428ebf Author: Alan Garny '' Date: Thu Jan 12 11:34:40 2017 +0100 CellML Annotation view: some minor GUI cleaning up '[ci' 'skip].' commit 30ba45790ce2fdeb033303e3e4730fd5f2b69c01 Author: Alan Garny '' Date: Thu Jan 12 10:43:29 2017 +0100 PMR window: improved our user messages. commit 9f1f7e9a0bd38685f550a7b826634cf3784c3a48 Merge: 5a6435a99 cb0ea3fa8 Author: Alan Garny '' Date: Thu Jan 12 10:17:58 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit 8988960460555d2ce785b5df268e5846ed481d2f Merge: 27d8aeb9e cb0ea3fa8 Author: Alan Garny '' Date: Thu Jan 12 10:17:34 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit cb0ea3fa857e1a3ad0ba89b5c1605a9abd61ffff Author: Alan Garny '' Date: Thu Jan 12 10:17:21 2017 +0100 User message widget: various improvements. commit 5a6435a99bf06597815cd134d024a28163dcca55 Author: Alan Garny '' Date: Thu Jan 12 09:33:47 2017 +0100 PMR window: various GUI improvements. commit 86df5295e7b34bfa76cfcc8243b59dd940899285 Author: Alan Garny '' Date: Thu Jan 12 08:56:44 2017 +0100 PMR window: slight GUI improvement. commit 567f3e90c8b3b1e14b2d999c85e473cdce1abe1c Author: Alan Garny '' Date: Wed Jan 11 20:16:33 2017 +0100 PMR window: can now show/hide/open exposure files. commit 88eedd37bc0822499351d97d6fbff8cc5207c945 Author: Alan Garny '' Date: Wed Jan 11 20:14:06 2017 +0100 Some minor cleaning up. commit 82e73bc817900a0b84122ee3726409ab2137889e Author: Alan Garny '' Date: Wed Jan 11 20:13:40 2017 +0100 Some minor cleaning up. commit 69dc2b4b6452fe47f66440df9650ec1d3c4f2a27 Merge: 0d3b9185e c40cab394 Author: Alan Garny '' Date: Wed Jan 11 20:02:38 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit 27d8aeb9e70888f796eccb4175810d485ab74818 Merge: 5dccdfa00 c40cab394 Author: Alan Garny '' Date: Wed Jan 11 20:02:19 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit c40cab39404ae0dfa8ef1ab692cf5cd38c2db950 Author: Alan Garny '' Date: Wed Jan 11 20:02:04 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 0d3b9185e239236d7fb68603b7fbb8989dcc8bcc Author: Alan Garny '' Date: Wed Jan 11 18:07:05 2017 +0100 PMR window: can now clone a workspace. commit cadd18925e38c868e8ca8af95b57483ec26c3bb8 Merge: e1967e6a5 a837df231 Author: Alan Garny '' Date: Wed Jan 11 18:03:17 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit 5dccdfa00405e2ed2ae52f1e5750acbe03b8c40b Merge: 9db422917 a837df231 Author: Alan Garny '' Date: Wed Jan 11 18:02:55 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit a837df231299441e1cd1dbba2e7745790e93b6e9 Author: Alan Garny '' Date: Wed Jan 11 18:02:32 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit e1967e6a5c6e5a02bac2796e53a957340efb1425 Author: Alan Garny '' Date: Wed Jan 11 17:31:15 2017 +0100 PMR window: various GUI improvements. commit 43d144487dc39c840a4357c3d69301fb53d670df Merge: f2e55e6f5 eab7ea268 Author: Alan Garny '' Date: Wed Jan 11 17:12:24 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit 9db4229179b88e0934fe9fb8d3684730ec03d488 Merge: 725716599 eab7ea268 Author: Alan Garny '' Date: Wed Jan 11 17:11:33 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit eab7ea268c54306bb85bb44584a3aeb8de6a6fda Author: Alan Garny '' Date: Wed Jan 11 17:11:12 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit f2e55e6f5511b231a7255f4cc9f6be29e0701952 Author: Alan Garny '' Date: Wed Jan 11 17:03:10 2017 +0100 PMR window: various GUI improvements and can now view an exposure in PMR. commit e616b4f5dbe392699684bf65a84d2ef391100bdc Author: Alan Garny '' Date: Wed Jan 11 15:37:09 2017 +0100 PMR window: some minor GUI improvement. commit 32a19abc44d980c26f65acc0bb8f2a2d4bf4318a Author: Alan Garny '' Date: Wed Jan 11 15:30:26 2017 +0100 PMR window: can now filter exposures. commit 48760d2dec32e3d3e400f139c6b57bfec16a0ee9 Author: Alan Garny '' Date: Wed Jan 11 14:51:29 2017 +0100 PMR window: started populating our list with exposures. commit 701cb6d5f91b84494940358e61a8a2f0639c2c60 Merge: 5dd9eaba1 3716e3adc Author: Alan Garny '' Date: Wed Jan 11 11:47:55 2017 +0100 Merge branch ''\''master'\''' into newpmrwindow. commit 7257165998e5898eddd52bafc398a6af57f1af39 Merge: be1e7c9f5 3716e3adc Author: Alan Garny '' Date: Wed Jan 11 11:47:35 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 3716e3adccdaa97d6da36bff1df8f34a9fd54454 Author: Alan Garny '' Date: Wed Jan 11 11:47:22 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit 5dd9eaba1a59be0de56d3fa7de0360e6ca7a7292 Author: Alan Garny '' Date: Wed Jan 11 11:15:14 2017 +0100 PMR window: started work on the tree view model. commit da4efaca74d8e34285ff4663bb6180692b67d23c Author: Alan Garny '' Date: Wed Jan 11 10:23:52 2017 +0100 PMR window: started work on using a tree view widget to list published exposures. commit 4d1e9c7ab14e9e870c8ee8f20b1d4f6925209475 Author: Alan Garny '' Date: Tue Jan 10 19:02:53 2017 +0100 PMR window: now use a QLabel to show a message. commit 2c740e48b45b1541816f1487499849800fefd4f8 Author: Alan Garny '' Date: Tue Jan 10 18:07:43 2017 +0100 PMR window: removed the direct dependency on WebViewerWidget. commit be1e7c9f500477d68e365adfac94ee7adfba9eb4 Merge: 50fdfccc0 ebcd042b9 Author: Alan Garny '' Date: Tue Jan 10 16:42:35 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit ebcd042b926b0e8eb9ef8cbc6abf60a522399526 Author: Alan Garny '' Date: Tue Jan 10 16:38:37 2017 +0100 PMR window: some minor cleaning up '[ci' 'skip].' commit c29374e14914627a77a25b9699f7e8a76f0cdabc Author: Alan Garny '' Date: Tue Jan 10 16:30:23 2017 +0100 Web viewer: some minor refactoring '[ci' 'skip].' commit df5ccad6ca4f887fd6cce1f41067f07655350a63 Author: Alan Garny '' Date: Tue Jan 10 16:29:22 2017 +0100 PMR window: some minor cleaning up '[ci' 'skip].' commit 50fdfccc0e06990ac163127601d4acf3a6ea4765 Merge: 4602f5be1 78b62a88b Author: Alan Garny '' Date: Tue Jan 10 16:21:50 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 78b62a88bad1b88158a7f2e75eb175be05263afc Author: Alan Garny '' Date: Tue Jan 10 16:20:59 2017 +0100 Improved the way we generate some data URI for an icon '[ci' 'skip].' commit 4a641592d73c1fac19458c791f36141221c77f9a Author: Alan Garny '' Date: Tue Jan 10 16:18:45 2017 +0100 Some minor improvements to the way we retrieve an empty directory '[ci' 'skip].' commit 4602f5be130cbd35da9181e84a183bd4f820d947 Author: Alan Garny '' Date: Tue Jan 10 16:10:39 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 507125aabb6ad58e93efd279acc247f0adfd44e8 Merge: be79d4b9f b0fe3ecf2 Author: Alan Garny '' Date: Tue Jan 10 16:10:02 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit b0fe3ecf2e28a1d4d1a44951123bee7ed25c6434 Author: Alan Garny '' Date: Tue Jan 10 15:47:02 2017 +0100 Some minor refactoring '[ci' 'skip].' commit 3d85d84f317cfa4fbca4f8ee54b2551ae085b908 Author: Alan Garny '' Date: Tue Jan 10 15:46:51 2017 +0100 Improved the way we check whether an Internet connection is available '[ci' 'skip].' commit 0f05554cabc7bf4b3f053e8ab129a807761b1024 Author: Alan Garny '' Date: Tue Jan 10 15:45:27 2017 +0100 Some minor refactoring and improvement of our 'get[Existing]Directory()' method '[ci' 'skip].' commit a6823dd53486bd3159b6612490939ed57f4ae849 Author: Alan Garny '' Date: Tue Jan 10 15:44:27 2017 +0100 Some minor cleaning up '[ci' 'skip].' commit f557364389162e30094908e11203dcda647c13eb Author: Alan Garny '' Date: Tue Jan 10 15:43:59 2017 +0100 General: make sure that no debug output is generated by third party libraries '[ci' 'skip].' commit be79d4b9fb6c96329178e18ceffe57eea63c12c9 Author: Alan Garny '' Date: Tue Jan 10 11:53:09 2017 +0100 Keep track of what needs reviewing. commit 695197251adbd96361d610ce86908db2c58492f1 Merge: 1dce88fb0 0c3d4d849 Author: Alan Garny '' Date: Tue Jan 10 11:14:27 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 0c3d4d849a9794c0d93ce9bc03412ecb1c01f5fc Merge: 71a9cfca7 5f73262d2 Author: Alan Garny '' Date: Tue Jan 10 11:13:16 2017 +0100 libgit2: upgraded to version 0.25.1 '(closes' '#1190).' commit 5f73262d2efcd4ee01fbfecd6be5242ddbd928cf Author: Alan Garny '' Date: Tue Jan 10 10:43:28 2017 +0100 libgit2: some work on upgrading to version 0.25.1 '(#1190).' commit bf21ce6ca2dda17a92c1b269c5af30058990ad11 Author: Alan Garny '' Date: Tue Jan 10 10:36:33 2017 +0100 libgit2: some work on upgrading to version 0.25.1 '(#1190).' commit 52ca9cae49680437265a534448e0450c0e1534ff Author: Alan Garny '' Date: Tue Jan 10 10:24:39 2017 +0100 libgit2: some work on upgrading to version 0.25.1 '(#1190).' commit 71a9cfca7eb941e9d558e2ffda334f635acf2b46 Author: Alan Garny '' Date: Tue Jan 10 10:22:20 2017 +0100 KaTeX: upgraded to version 0.7.0 '(closes' '#1189).' commit 1dce88fb0804f90108f82a06379a3dff3ac33ae0 Author: Alan Garny '' Date: Mon Jan 9 14:38:03 2017 +0100 PMR Workspaces window: cleaned up the code for determining the tool tip to show. commit cd453bd1454dc77a313c8bdd97af9ca4c4e26f2a Author: Alan Garny '' Date: Mon Jan 9 14:37:04 2017 +0100 Some minor cleaning up. commit 8d8c790741c97f4cfd4a3da8ef5cdb0075b141b8 Author: Alan Garny '' Date: Mon Jan 9 14:27:34 2017 +0100 Some minor cleaning up. commit 10ed3a2ff549bad11b8aad9c677b94593a6f900f Author: Alan Garny '' Date: Mon Jan 9 11:58:30 2017 +0100 PMR Workspaces window: make sure that the CSS works for action buttons. commit ae70d7e3cad3eac0ca30064d32cec796f7415922 Author: Alan Garny '' Date: Mon Jan 9 10:47:33 2017 +0100 Some minor cleaning up. commit 8d9b2771b9df8a086b7b8999bd7fae0dc24865ec Author: Alan Garny '' Date: Fri Jan 6 14:03:12 2017 +0100 Some minor cleaning up. commit 2db329cf687842a4821c0ab3dae91f6840f5c41d Author: Alan Garny '' Date: Fri Jan 6 14:02:47 2017 +0100 Some minor cleaning up. commit 408dc837cb96da3da6b9e5fc875c2028a187cece Author: Alan Garny '' Date: Fri Jan 6 13:56:37 2017 +0100 Some minor cleaning up. commit 8c47fe2e5bab70753850e13c5a70efef90235e69 Author: Alan Garny '' Date: Fri Jan 6 13:09:33 2017 +0100 Some minor cleaning up. commit 81d33e6cf25c244bc46e3a495240774b2d36c65f Author: Alan Garny '' Date: Fri Jan 6 12:52:41 2017 +0100 Some minor cleaning up. commit 7d182e212906a708300808f7a958401c1a782cd6 Author: Alan Garny '' Date: Fri Jan 6 11:10:58 2017 +0100 PMR Workspaces window: some CSS improvements. commit 7ac0da82a3a8997ecf28284bcc0ef0b7f9ef9074 Author: Alan Garny '' Date: Fri Jan 6 11:06:56 2017 +0100 PMR Workspaces window: some CSS improvements. commit 95605a1afb023a9c4ec2d92b0f0d3b97780d3f2b Author: Alan Garny '' Date: Thu Jan 5 17:23:57 2017 +0100 PMR Workspaces window: our New and Reload action require to be authenticated to be enabled, so they should be disabled by default. commit 21515dd11ce62438a8fdf2b2316ffdc504f6f99f Merge: 656ff4cb0 17a037667 Author: Alan Garny '' Date: Thu Jan 5 16:19:21 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 17a0376670d96f0eb233b3373e2bdbc62fcb922a Merge: 38d8eae13 1c5a4c397 Author: Alan Garny '' Date: Thu Jan 5 16:17:30 2017 +0100 LLVM: upgraded to version 3.9.1 '(closes' '#1099).' commit 1c5a4c3978f0d9203f3770b72c1daecc56317a02 Author: Alan Garny '' Date: Thu Jan 5 15:36:44 2017 +0100 LLVM: some work on upgrading to version 3.9.1 '(#1099).' commit 9a42846b9f18be448ac81cbfe57bd88c3ff35fb5 Author: Alan Garny '' Date: Thu Jan 5 13:25:10 2017 +0100 LLVM: some work on upgrading to version 3.9.1 '(#1099).' commit 45ccf0cf74b2b9d5c65f63f3e5780a6d4624f6ac Author: Alan Garny '' Date: Thu Jan 5 13:12:01 2017 +0100 LLVM: some work on upgrading to version 3.9.1 '(#1099).' commit d1b746e95d9e55b755eee2444da908230d9efc97 Author: Alan Garny '' Date: Wed Jan 4 18:52:43 2017 +0100 LLVM: some work on upgrading to version 3.9.1 '(#1099).' commit 11c81d0f2dffeec473361c8c8039e520bd268080 Author: Alan Garny '' Date: Wed Jan 4 18:21:22 2017 +0100 LLVM: some work on upgrading to version 3.9.1 '(#1099).' commit 38d8eae13cef04ad4d8ec57f321a5532f823c335 Author: Alan Garny '' Date: Wed Jan 4 17:43:56 2017 +0100 Make sure that our compiler generates the type of code that is ''\''compatible'\''' with the version of LLVM that we are using. commit 656ff4cb0b9740e8bae97e45236f51e531a75ca5 Merge: 777a83701 fc1917f99 Author: Alan Garny '' Date: Tue Jan 3 12:55:45 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit fc1917f994f679df016504b66e826af66593ef6d Merge: e8fd4178b 83b12ea82 Author: Alan Garny '' Date: Tue Jan 3 12:54:47 2017 +0100 zlib: upgraded to version 1.2.10 '(closes' '#1185).' commit 83b12ea82e5c29c0bd9c09d03297f7525d6e7a62 Author: Alan Garny '' Date: Tue Jan 3 12:29:07 2017 +0100 zlib: some work on upgrading to version 1.2.10 '(#1185).' commit 0b17880554833d7ebb60de3332d255bdad356800 Author: Alan Garny '' Date: Tue Jan 3 12:20:13 2017 +0100 zlib: some work on upgrading to version 1.2.10 '(#1185).' commit faa725fc1951588658e37d2cda9fa7bc14f23e28 Author: Alan Garny '' Date: Tue Jan 3 12:16:15 2017 +0100 zlib: some work on upgrading to version 1.2.10 '(#1185).' commit 777a83701a750a7eeaabfb035f6a0a6389bd941c Merge: a88311948 e8fd4178b Author: Alan Garny '' Date: Mon Jan 2 11:51:27 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit e8fd4178b25aaa4c5cd237003f5555bbb0d16688 Merge: 2ccdab34e 2e266cc19 Author: Alan Garny '' Date: Mon Jan 2 11:50:02 2017 +0100 libgit2: upgrade to version 0.25.0 '(closes' '#1183).' commit 2e266cc19d7f353b403023b483832f289f220c67 Author: Alan Garny '' Date: Mon Jan 2 11:13:04 2017 +0100 libgit2: some work on upgrading to version 0.25.0 '(#1183).' commit 1563fba01b867aeb9da95902f9f77464607daad8 Author: Alan Garny '' Date: Mon Jan 2 11:04:42 2017 +0100 libgit2: some work on upgrading to version 0.25.0 '(#1183).' commit 605a9f4385524e6f0049ed022001bd4b42e54855 Author: Alan Garny '' Date: Mon Jan 2 09:59:43 2017 +0100 libgit2: some work on upgrading to version 0.25.0 '(#1183).' commit cc283c47169c42601b6e75ca3eb59ec422c10c48 Author: Alan Garny '' Date: Mon Jan 2 09:57:11 2017 +0100 libgit2: some work on upgrading to version 0.25.0 '(#1183).' commit a8831194831fd0931e5ba14588ac6792486e15cb Merge: 5add41b43 2ccdab34e Author: Alan Garny '' Date: Sun Jan 1 15:35:58 2017 +0100 Merge branch ''\''master'\''' into issue1141. commit 2ccdab34ee60582859ec144adacf423cb24340ec Merge: 7b1909be4 26e4b044c Author: Alan Garny '' Date: Sun Jan 1 15:33:48 2017 +0100 zlib: upgrade to version 1.2.9 '(closes' '#1181).' commit 26e4b044c4dd909c6d2c285a59d8571b0dbd8125 Author: Alan Garny '' Date: Sun Jan 1 15:09:39 2017 +0100 zlib: some work on upgrading to version 1.2.9 '(#1181).' commit faa73dc84820ad9d0fb88594a0c3895caf8f3fe1 Author: Alan Garny '' Date: Sun Jan 1 15:02:10 2017 +0100 zlib: some work on upgrading to version 1.2.9 '(#1181).' commit 3407546a9bb1d5431f48265a43945540842c26c7 Author: Alan Garny '' Date: Sun Jan 1 14:28:02 2017 +0100 zlib: some work on upgrading to version 1.2.9 '(#1181).' commit b58538cb0662f8f112a26cc09427a4085c43e647 Author: Alan Garny '' Date: Sun Jan 1 13:54:49 2017 +0100 zlib: some work on upgrading to version 1.2.9 '(#1181).' commit 2fc135e7737e723a3e79fa145f2cbf5e035a701b Author: Alan Garny '' Date: Sun Jan 1 13:48:22 2017 +0100 zlib: some work on upgrading to version 1.2.9 '(#1181).' commit 7b1909be49342c01be36c7cb150312f4a26bfc7d Merge: d064b574a 5562379fa Author: Alan Garny '' Date: Sun Jan 1 13:46:01 2017 +0100 QScintilla: upgrade to version 2.9.4 '(closes' '#1179).' commit 5562379fa6e7d0199f5e93439292845e6d18c50e Author: Alan Garny '' Date: Sun Jan 1 13:21:02 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 '(#1179).' commit 4848fa43060626ee4aa49b9e068fff2e88440e1c Author: Alan Garny '' Date: Sun Jan 1 13:10:01 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 '(#1179).' commit 14b436d59bd7f79344a3f66d5fddddd980ca9a04 Author: Alan Garny '' Date: Sun Jan 1 13:05:50 2017 +0100 QScintilla: some work on upgrading to version 2.9.4 '(#1179).' commit 5add41b4360a50c151e444bbad8ee76f212c3cbf Merge: 4397c7402 d064b574a Author: Alan Garny '' Date: Tue Dec 20 13:33:18 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit d064b574af09e2d2e4d862980e45bb78163f82ac Merge: 396e02ed0 df188fa86 Author: Alan Garny '' Date: Tue Dec 20 13:30:29 2016 +0100 Merge pull request '#1178' from opencor/issue1177 libgit2: upgraded to version 0.24.5 '(closes' '#1177).' commit df188fa86c7389bebe41e72fb3868d386194d304 Author: Alan Garny '' Date: Tue Dec 20 12:07:27 2016 +0100 libgit2: some work on upgrading to version 0.24.5 '(#1177).' commit cc93b7c8b7e24bedc645bc891acb968aa8763665 Author: Alan Garny '' Date: Tue Dec 20 11:59:10 2016 +0100 libgit2: some work on upgrading to version 0.24.5 '(#1177).' commit 396e02ed006f00257bc35ef4f3501d64dae6f381 Author: Alan Garny '' Date: Tue Dec 20 11:38:18 2016 +0100 Slight update to the 'developer'\''s' documentation '(following' the release of Xcode '8.2.1)' '[ci' 'skip].' commit 4397c7402166d59ab63098a830f2d7411f3d66d4 Author: Alan Garny '' Date: Mon Dec 19 17:40:02 2016 +0100 A way to see what is being generated. commit c9ec098db57a8ae1821bb84aafb7df6c91ebbd94 Author: Alan Garny '' Date: Mon Dec 19 17:39:35 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 01a060028980adec31d1dd78f505e63a657e789c Author: Alan Garny '' Date: Mon Dec 19 17:05:27 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' Removed things that are not being used. commit b59b9b8dc01e955b83df62a743fa3861bfce07dc Author: Alan Garny '' Date: Mon Dec 19 17:03:34 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 05665c20934665d1dc89d4468c385f6b0f0615a9 Merge: 17ed1b1c0 24099a369 Author: Alan Garny '' Date: Fri Dec 16 21:04:02 2016 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 17ed1b1c0a2174e0648804bc5e130c09ebfe0c7b Author: Alan Garny '' Date: Fri Dec 16 21:03:47 2016 +0100 Slightly improved our progress bar widget. commit 37e5d6db69c8f278b3b3f6a526504c29dde81e57 Author: Alan Garny '' Date: Fri Dec 16 17:01:08 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f0b16e2e357e50c62b973854359eb1ab8daec027 Author: Alan Garny '' Date: Fri Dec 16 12:44:52 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 46a14de01facf30099ad284ea45b0a0e61ad0d51 Author: Alan Garny '' Date: Fri Dec 16 11:39:32 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4e998fe29db1fa714ed78eb4e8c44a382d4d94ae Author: Alan Garny '' Date: Fri Dec 16 11:01:48 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 06b2f70f456638947fbdfdef90fd2428a62acfd2 Author: Alan Garny '' Date: Thu Dec 15 19:00:17 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5e4c343d641ca6daf0ef49d3dec87041f04d3006 Author: Alan Garny '' Date: Thu Dec 15 17:40:04 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 8644f5cfd043e4e3df9915a93cefcd99b5b75993 Author: Alan Garny '' Date: Thu Dec 15 16:57:34 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 368cf22c4d4ffd0b1d801808538417549cfa6644 Merge: d4278e5ac 24099a369 Author: Alan Garny '' Date: Thu Dec 15 16:52:26 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 24099a369c69c9e32853df9ecc2dcb277ef8e622 Author: Alan Garny '' Date: Thu Dec 15 16:52:06 2016 +0100 Reverting commit dccf757 since it may cause other problems. Indeed, our PMR support plugin relies on Settings to save its settings, so say that you start OpenCOR and authenticate to PMR, then upon leaving OpenCOR, your authentication information to PMR will be lost. Now, we might be able to retrieve that information prior to saving our settings, but it might require a new method to our Plugin interface since no Plugin interface method is called before calling 'saveSettings().' Anyway, $'it\342\200\231s' not worth it in the end and $'it\342\200\231s' better to $'\342\200\230manually\342\200\231' clear whatever settings needs clearing before saving our settings. Also, commit dccf757 might have been fine for the GUI side of things, but what about the CLI version of 'OpenCOR?' In fact, we forgot to clear the settings '(as' in commit 'dccf757)' before saving them in the CLI version, but if we had cleared them then we would have likely lost useful GUI settings in the process. So, yes, a $'\342\200\230good\342\200\231' idea gone $'wrong\342\200\246' commit d4278e5ac173480c9bda07f95cd2b78a6462c24d Author: Alan Garny '' Date: Thu Dec 15 16:07:52 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 596e21d5b7e349eee6f50d515d7584fd0d30ebae Author: Alan Garny '' Date: Thu Dec 15 15:52:53 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f2159b10603cf04776aec39a5fc7d5412fb8f9ca Author: Alan Garny '' Date: Thu Dec 15 15:31:09 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' Hate it '(especially' when $'it\342\200\231s' not because of your own 'doing)' when you spend a long time trying to figure out why a plugin $'doesn\342\200\231t' load on Windows, then to find out that $'it\342\200\231s' because some interfaces are not compiled for that said 'plugin!' commit e356eb0b917128826e43e4e740e5cfe6835ddd62 Merge: 37723fc3b 6b2395b73 Author: Alan Garny '' Date: Thu Dec 15 13:28:45 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 6b2395b73175393720cbac7279bb49dc25dd3b70 Author: Alan Garny '' Date: Thu Dec 15 13:28:19 2016 +0100 Removed some unused '(former' 'debug?)' code. commit 37723fc3b8de66d2ab1393835e7b538103c8ba2c Author: Alan Garny '' Date: Thu Dec 15 11:53:38 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 9553dec22162b8d3a7d40c4d1ef85abc71ecba37 Author: Alan Garny '' Date: Thu Dec 15 11:51:19 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d378bf743ed829f30fb4d3da6e6975e72d0e232d Author: David Brooks '' Date: Thu Dec 15 10:44:22 2016 +1300 Get matplotlib working under PythonQt '(#1085).' commit bc588ca96fcb23d0e5d484b6e80af649e62f9866 Author: Alan Garny '' Date: Wed Dec 14 17:58:11 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4b6c93ed7dd9c947790043a17da65b77c691e523 Merge: 44e3a65f8 dccf75777 Author: Alan Garny '' Date: Wed Dec 14 17:54:45 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit dccf75777113f38ebe46050ffbdab634b089abdd Author: Alan Garny '' Date: Wed Dec 14 17:54:25 2016 +0100 General: make sure that we start afresh when saving our settings '[ci' 'skip].' This means that, for plugins, we $'don\342\200\231t' have to worry about removing previous settings, should there ever be a need for this. commit 44e3a65f8cea53a1bb0eff7d1850a1169743eb44 Author: Alan Garny '' Date: Wed Dec 14 17:26:34 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 8cb54a284ecddf5eebbd2090c35e600244a2f43a Author: Alan Garny '' Date: Wed Dec 14 17:00:31 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b60d30e67c3ca806d1a9ccae399a78e89c07d438 Author: Alan Garny '' Date: Wed Dec 14 16:18:42 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1990ecfc5ce477a0ad302ab0f7e7c86eaa8b75bf Author: Alan Garny '' Date: Wed Dec 14 16:05:50 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2de13bb5d74780559a2d19ad058fe110aa4448b4 Author: Alan Garny '' Date: Tue Dec 13 17:39:27 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 32ff0811f3f6fc01e87bdef91d0c7d82533df65b Author: Alan Garny '' Date: Tue Dec 13 17:39:07 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit fdfe58d918164433d3f5fc1d2f9d3132945990f9 Author: Alan Garny '' Date: Tue Dec 13 16:55:57 2016 +0100 Some minor cleaning up. commit 249f9f820fb91c00c74edd724b0ab418ebde3f1c Author: Alan Garny '' Date: Tue Dec 13 16:40:43 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 72c1da0956bd9750afdd8c08b7ea4592f5fcfb03 Merge: 55bc7ecbe e5a9b7322 Author: Alan Garny '' Date: Tue Dec 13 14:48:07 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit e5a9b7322a8720f0f0724b47a1db4b3e3e3b2d02 Author: Alan Garny '' Date: Tue Dec 13 14:47:02 2016 +0100 $'\020Refactored' some code that deals with a 'widget'\''s' context menu. We could simply override the 'contextMenuEvent()' method rather than calling 'setContextMenuPolicy(Qt::CustomContextMenu)' and then handling the 'customContextMenuRequested()' signal. commit 55bc7ecbe4a5bf9985bc5e5b4e06b201f1c9f25e Author: Alan Garny '' Date: Tue Dec 13 13:45:06 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b6c7a34fdb93f145c0d366faf9052abb0db8ec7b Merge: 1538e4147 d17602361 Author: Alan Garny '' Date: Tue Dec 13 09:57:43 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit d176023615290cfe858c4ece8c993d75b5dcff92 Author: Alan Garny '' Date: Tue Dec 13 09:57:27 2016 +0100 Slight update to our prerequisites page '[ci' 'skip].' commit 1538e41479acc8122046bafb0cf433a5a8894036 Author: Alan Garny '' Date: Mon Dec 12 20:00:40 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3e0a9c8b3ed55df5e69a41881981652782c23525 Author: Alan Garny '' Date: Mon Dec 12 17:50:58 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 36d3a6c226f6b83a73320319ee1bf97d7eda0289 Merge: be8118f1d d0189b71e Author: Alan Garny '' Date: Mon Dec 12 17:07:36 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit d0189b71e56cbe3619120107906580be6d45b94f Author: Alan Garny '' Date: Mon Dec 12 17:07:19 2016 +0100 Slight update to our third party libraries page '[ci' 'skip].' commit be8118f1d74894c0e327774ff2a98751b573cc28 Author: Alan Garny '' Date: Mon Dec 12 16:13:25 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4664a1171ecce958330c0c470c08438ff21524d0 Author: Alan Garny '' Date: Mon Dec 12 14:24:07 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 0d31cf84cd4852b99f7c733c0e9f9733982f510d Author: Alan Garny '' Date: Mon Dec 12 13:42:33 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4d11a283212076e9818a0a60807f534bd707ff9b Author: David Brooks '' Date: Mon Dec 12 18:00:54 2016 +1300 Specify Python 'plugin'\''s' dependencies. commit 4b691c4149d6212deda46b1b402ba3794e6a1bdf Author: David Brooks '' Date: Mon Dec 12 18:00:15 2016 +1300 Use pre-built version of Python Qt '(#1085).' commit 41761b9f7c2a3b56b4067c3f63a990414ff430dc Author: David Brooks '' Date: Mon Dec 12 17:59:32 2016 +1300 Fix typos... '(#1085).' commit 62f1810e55862bd1d388177d6c2bf594f4456f91 Author: David Brooks '' Date: Mon Dec 12 17:58:55 2016 +1300 Tidy up code '(#1085).' commit 6e26c5a0ca14b8e22ceb65fc8ecc320103b4446f Author: David Brooks '' Date: Mon Dec 12 17:51:46 2016 +1300 Rename '`PythonQt`' plugin to '`PythonQtAPI`' to avoid name clashes with the actual Python Qt library '(#1085).' commit 6889a764de350b4e2e00b8434d90112407dbe196 Author: David Brooks '' Date: Mon Dec 12 15:32:22 2016 +1300 Use 'CTK'\''s' console widget for our Python console window '(#1085).' commit e019a5316f24c3eb46a820517ef0f3a906b4ef2a Author: David Brooks '' Date: Mon Dec 12 15:29:51 2016 +1300 Use 'CTK'\''s' AbstractPythonManger with Python Qt '(#1085).' commit b627740a52e6aee8569f1b3ea614aabed9c07c15 Author: David Brooks '' Date: Mon Dec 12 15:27:44 2016 +1300 Use our EXPORT macros in CTK headers '(#1085).' commit dc89fa6d8a0c477aff9c0b07574ffc963e2ac7c7 Author: David Brooks '' Date: Mon Dec 12 12:36:01 2016 +1300 Tidy up removal of Python Qt submodule '(#1085).' commit 1bb1b4fa608e0dfe46b0820b54188006c0b62d12 Author: David Brooks '' Date: Mon Dec 12 12:12:11 2016 +1300 Get ctkAbstractPythonManager building with Qt5 '(#1085).' commit 66dad4ca6cd25f56aac776a21b9e04238762d6c0 Author: David Brooks '' Date: Mon Dec 12 12:11:20 2016 +1300 Work on PythonQt support module '(1085).' Use 'CTK'\''s' Python manager for Python Qt. commit 7c9f0b96e0c7cddefca43e203363b46f7fbba039 Author: David Brooks '' Date: Mon Dec 12 11:30:40 2016 +1300 Work on new PythonQtSupport plugin '(#1085).' commit 07bede4d1b8293fdd6e3c6e6b36111ab99de5722 Merge: 4eb18ffeb 533757e1f Author: Alan Garny '' Date: Fri Dec 9 10:14:59 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 533757e1f41a458b7cd19eb130b7cbe479847cc8 Author: Alan Garny '' Date: Fri Dec 9 09:56:53 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1dc038cd4d273aedeb1cc270b80a3395bfc9c547 Merge: 2b8029d16 d2312a5c8 Author: Alan Garny '' Date: Fri Dec 9 09:55:37 2016 +0100 Set external binaries directory at CMake intialisation time. commit 414ce6c8fe29902fb1d19ba55972fe67331f2707 Author: David Brooks '' Date: Fri Dec 9 21:34:17 2016 +1300 The Python Qt sources are no longer in a git sub-module '(#1085).' commit 073f3773878f7b42cb9e16b52ec1ac716f66832f Author: David Brooks '' Date: Fri Dec 9 21:31:34 2016 +1300 Work on a Python console window '(#1085).' These files are copied from the Common Toolkit '(CTK)' project '(https://github.com/commontk/CTK)' as of commit 04607d0. commit fcb97fdffe687720c310328e80f56dbb0c306393 Author: David Brooks '' Date: Fri Dec 9 16:07:27 2016 +1300 Revert PMR Workspaces code. commit b70517f0f9c372ec7f0aa6f11c3ca12cefa624ba Author: David Brooks '' Date: Fri Dec 9 14:41:41 2016 +1300 Build and package Python Qt as an External Project '(1085).' commit c7543012cabdd0aa1c24bd6695ff02347e6764aa Author: David Brooks '' Date: Fri Dec 9 14:40:26 2016 +1300 Tidy up Python plugin build '(#1085).' commit dfa7512f861e291e4375611921f189daa80a7770 Author: David Brooks '' Date: Fri Dec 9 14:34:12 2016 +1300 DEST_EXTERNAL_BINARIES_DIR is now set globally. commit ef37db63da3f85da127cf53bf7d9145475d18a79 Author: David Brooks '' Date: Fri Dec 9 14:33:04 2016 +1300 CLI plugin initialisation now works as expected '(#1173).' commit df24b1623345cc348625183190bf57dc4871fe67 Author: David Brooks '' Date: Fri Dec 9 14:32:00 2016 +1300 Consistently use UPPERCASE for CMake commands '(#1085).' commit 219640e4ca2894f904d5c9d6b98cba0d91890217 Merge: 762f460d4 d2312a5c8 Author: David Brooks '' Date: Fri Dec 9 14:01:46 2016 +1300 Merge branch ''\''ext_bin_dir'\''' into pythonplugin commit d2312a5c86655b25f6f117393dda28dfb5182fe2 Author: David Brooks '' Date: Fri Dec 9 13:25:03 2016 +1300 Set and create external binaries destination directory at initialisation time. commit 762f460d4a7f9caedc10c1517362c272caba2eac Merge: c40fc871d 2b8029d16 Author: David Brooks '' Date: Fri Dec 9 10:21:41 2016 +1300 Merge branch ''\''master'\''' into pythonplugin commit 4eb18ffeb9487c5e341776ce2897f5588a026892 Merge: 1397bc512 2b8029d16 Author: Alan Garny '' Date: Thu Dec 8 19:30:51 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 2b8029d16b7af9d8023c1dc7e34f63ffcc6fe188 Author: Alan Garny '' Date: Thu Dec 8 19:29:58 2016 +0100 Slight updates to our downloads page '[ci' 'skip].' commit 1397bc5124037758e0411d2e14b86fa616f205c5 Merge: d3eb50dcd 2d283b8e4 Author: Alan Garny '' Date: Thu Dec 8 19:13:38 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 2d283b8e487557d77cc68ff39ede894f63667116 Merge: 0a7aecfb5 512211f01 Author: Alan Garny '' Date: Thu Dec 8 19:11:57 2016 +0100 CLI: a 'plugin'\''s' initialisation and finalisation code now gets called when run from the CLI '(closes' '#1173).' commit 512211f014dd1c728b1b4432052c3953b6b20162 Author: Alan Garny '' Date: Thu Dec 8 18:09:43 2016 +0100 CLI: some work on ensuring that a 'plugin'\''s' initialisation and finalisation code is called when running from the CLI '(#1173).' commit acf9b4537c676e167cf45e2c65fc91cabecefdbb Author: Alan Garny '' Date: Thu Dec 8 17:40:20 2016 +0100 Some minor cleaning up. commit c40fc871d3d25a9401a1c121faabb37e55b8e06a Author: David Brooks '' Date: Thu Dec 8 19:35:31 2016 +1300 Implement '"help"' and '"pip"' commands and run Python when 'there'\''s' no command '(#1085).' commit 6d1ccc31a184a644bf2e278db51ff80db599bc1e Author: David Brooks '' Date: Thu Dec 8 19:32:29 2016 +1300 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit de61051682d250b7223cf02054d90a26e7da8f77 Author: David Brooks '' Date: Thu Dec 8 18:02:14 2016 +1300 Build package Python as an ExternalProject '(#1085).' commit 7a69d47a37a3389421596742a0de34a03e1d6a44 Author: David Brooks '' Date: Thu Dec 8 17:55:00 2016 +1300 Save the root directory of external packages in global variables so CMake can find them when building other packages '(#1161).' commit 2bfb80b2a6fe02996da08499dcddc06b71c51fde Author: David Brooks '' Date: Thu Dec 8 17:51:18 2016 +1300 Extend ADD_PLUGIN macro to optionally copy a directory into the generated application '(#1106).' commit d3eb50dcdf30f1e85d9658e0aec3ce523bcae5ab Author: Alan Garny '' Date: Wed Dec 7 18:13:26 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 66a99bce00d9251843dae85a5771ab9e1b672fae Author: Alan Garny '' Date: Wed Dec 7 17:53:01 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 441f46dbd63c16d6b1498526d06f1f2393378063 Author: Alan Garny '' Date: Wed Dec 7 16:57:08 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7afc63e0d88e6544e119fd3cdd55dedce3450e49 Author: Alan Garny '' Date: Wed Dec 7 16:06:08 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c5d2954971e8cc2ca8bbbde4b90fe2a8c5a1105c Author: Alan Garny '' Date: Wed Dec 7 15:50:46 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit edc07641606b9c49793a5608022555b5323988c9 Merge: b4555ea47 0a7aecfb5 Author: Alan Garny '' Date: Wed Dec 7 09:56:42 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 0a7aecfb5f0544c325df94cce0f91397bbe785cb Merge: 76b0d2fa4 898f356e6 Author: Alan Garny '' Date: Tue Dec 6 22:53:46 2016 +0100 README files: converted them to reStructuredText '(closes' '#1170).' commit 76b0d2fa4832c061e396d4f1dd9ebaab5fc7f7c4 Author: Alan Garny '' Date: Tue Dec 6 22:21:34 2016 +0100 Made sure that our Core CLI test takes into account that the Samples plugins may be built. commit e609ee6f71b334ceca484ed3814003beb107a3ab Author: Alan Garny '' Date: Tue Dec 6 20:49:23 2016 +0100 Trying to understand why our Core CLI test for the ''\''-p'\''' option fails... commit a1dfe2fc32c25d22703902899d04cfcd095f4da3 Author: Alan Garny '' Date: Tue Dec 6 19:55:48 2016 +0100 Added some tests following issue '#1168.' commit 898f356e689bc3be5215ce86282bc145e6e65de2 Author: Alan Garny '' Date: Tue Dec 6 19:04:23 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' So, it $'wasn\342\200\231t' actually rendering properly on https://livesphinx.herokuapp.com/ either, but now it does, so it ought to be fine on GitHub $'too\342\200\246' commit fa6fc6a5283da680f73c2ac58bb2909ebdb9d84d Author: Alan Garny '' Date: Tue Dec 6 19:03:16 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 6decb1748dbfcd06311b5b18683c1590e8d72616 Author: Alan Garny '' Date: Tue Dec 6 19:01:06 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit ba37b6b69fed2dc8fc9548062ec283ab4d07be49 Author: Alan Garny '' Date: Tue Dec 6 18:59:35 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 994d21573944d1caeb802ce122801ea4d70c8c28 Author: Alan Garny '' Date: Tue Dec 6 18:58:52 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 286f9b17906f558b82663dfc0baaeaa8153731ac Author: Alan Garny '' Date: Tue Dec 6 18:58:02 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit b5b04ffa7604975abe4fd01b055cfe4e7b0b293c Author: Alan Garny '' Date: Tue Dec 6 18:57:23 2016 +0100 Revert '"README' files: some work on converting them to reStructuredText '(#1170)."' This reverts commit d8cc010c1c3cfa1ba8c066da7d0273ba25f5c607. commit d8cc010c1c3cfa1ba8c066da7d0273ba25f5c607 Author: Alan Garny '' Date: Tue Dec 6 18:56:44 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 6599f890d0dab96e1a530a8f7c3ef318f51276b6 Author: Alan Garny '' Date: Tue Dec 6 18:55:57 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 1140a5f452f6f86b1b45e8315acb3d0fd187cfb0 Author: Alan Garny '' Date: Tue Dec 6 18:55:08 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit 1e9410e34783853dec61e326adc9d5c1b7ef56be Author: Alan Garny '' Date: Tue Dec 6 18:54:20 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Trying to see why the LLVM readme file $'doesn\342\200\231t' render properly on $'GitHub\342\200\246' commit cbe01cb65bedf0b0a854c53623fb1d8bb8219e8d Author: Alan Garny '' Date: Tue Dec 6 18:46:09 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' commit 6a3b27682d4563b3e6a69b22ad715933197bb014 Author: Alan Garny '' Date: Tue Dec 6 18:45:12 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' commit 59097efd07368a93eaf3fec59001442c19a0ad84 Author: Alan Garny '' Date: Tue Dec 6 18:43:43 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' commit 0dc442c29fb66e83a7f679e5fe7c2a69ef0eead0 Author: Alan Garny '' Date: Tue Dec 6 18:39:34 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' GitHub $'doesn\342\200\231t' support that way of generating a line break, so forget about it. commit 114353f8ed9dcb092188ac0a4fe5342c1e54c2bd Author: Alan Garny '' Date: Tue Dec 6 18:27:59 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Well, pandoc is really not great at converting Markdown to 'reStructuredText!' commit 30b41db1c89d0273612488f10962de8318ff973a Author: Alan Garny '' Date: Tue Dec 6 13:40:28 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' Result of calling: pandoc --from=markdown --to=rst '--output=' '' commit babdf2cc1c41a182bf90afa8ccc6a9c407cffe2e Author: Alan Garny '' Date: Tue Dec 6 13:39:05 2016 +0100 README files: some work on converting them to reStructuredText '(#1170).' commit d1921a576659fff8c6f81e53f5975c58d4b03117 Merge: 4f78249b2 40432c346 Author: Alan Garny '' Date: Tue Dec 6 10:45:50 2016 +0100 CLI: fixed a misleading help message when the command specifies a missing plugin '(closes' '#1168).' commit 4f78249b24665faeaddd2400cb7d36a38aae6255 Author: Alan Garny '' Date: Tue Dec 6 10:36:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 84f582eff36ffaf35c7829e29de40c4dfe36f920 Merge: 91ff19311 c2e3ce29d Author: Alan Garny '' Date: Tue Dec 6 10:35:34 2016 +0100 CLI: options can now be passed to plugins '(closes' '#1166).' commit 42c3d504d6febf3f84bf8b0fce4ff987c04b6a85 Author: David Brooks '' Date: Tue Dec 6 13:51:18 2016 +1300 Tidy up code. commit b90898b689e95fa5813c399a04e640ddc34d3a50 Author: David Brooks '' Date: Tue Dec 6 13:50:14 2016 +1300 Fix a bad merge. commit 30455cc8b9e0373aac10bb6571b32a0b2de0bb2a Merge: cf697ed01 40432c346 Author: David Brooks '' Date: Tue Dec 6 13:43:36 2016 +1300 Merge branch ''\''cli_help'\''' into pythonplugin commit 40432c3462573d52361d015c1321e1e5b68678df Author: David Brooks '' Date: Tue Dec 6 13:43:13 2016 +1300 Actually allow an empty command to be sent to a plugin '(#1168).' commit cf697ed01837dc865371efbe79caf90fb64ddd23 Merge: fbe803cf3 61bf32df7 Author: David Brooks '' Date: Tue Dec 6 13:24:05 2016 +1300 Merge branch ''\''cli_help'\''' into pythonplugin commit fbe803cf32f5be81dadf0c6c29c79789bb41dc7a Merge: c878c89e2 c2e3ce29d Author: David Brooks '' Date: Tue Dec 6 13:23:51 2016 +1300 Merge branch ''\''cmd_args'\''' into pythonplugin commit c878c89e2e943107b01d9e2e7ff6abce1c9bf02c Merge: 4551a6048 91ff19311 Author: David Brooks '' Date: Tue Dec 6 13:18:41 2016 +1300 Merge branch ''\''master'\''' into pythonplugin commit 61bf32df719cd64ab8aebcfc6bca2f6afd9f4c82 Author: David Brooks '' Date: Tue Dec 6 12:51:06 2016 +1300 Update CLI help to reflect changed syntax when sending a command to all plugins '(#1168).' commit 880573b0b387c13510ac5e76bc4acd4ff8f4cb53 Author: David Brooks '' Date: Tue Dec 6 12:49:18 2016 +1300 Always check a plugin exists even when it 'isn'\''t' being given a command '(#1168).' commit c2e3ce29d792767269028b8900f8559ba7f2643b Author: David Brooks '' Date: Tue Dec 6 11:22:28 2016 +1300 All CLI arguments that follow a command need to be passed to the command '(#1166).' commit b4555ea474a1464bb52f7d85ce2e4656483df232 Author: Alan Garny '' Date: Mon Dec 5 17:23:58 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 23fa175f79e6b78c6d130689aec57e5bb3126e1d Author: Alan Garny '' Date: Mon Dec 5 15:32:12 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3eb6e0e4eb839277e5be05879ec9d86b71e01b6a Author: Alan Garny '' Date: Mon Dec 5 10:05:39 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 798519b6c38ee95c10a79da878bb30981c22f2a1 Author: Alan Garny '' Date: Mon Dec 5 10:04:21 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e318b9eecbf7e6013fef32df9d8e76a82d343170 Author: Alan Garny '' Date: Mon Dec 5 09:57:23 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6cddeb66492b3b17d6654a3176a448d4602a96f4 Author: Alan Garny '' Date: Mon Dec 5 09:56:35 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d0e9041c4432553ef7de403adda8a506d3272395 Merge: 6f2dba6c9 91ff19311 Author: Alan Garny '' Date: Mon Dec 5 09:47:34 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 91ff193112d0f46a570c3ed30ee1afd71a3f020b Merge: b940ab734 8fcc9af93 Author: Alan Garny '' Date: Mon Dec 5 08:21:10 2016 +0100 Plugins: prevented old plugins from potentially crashing OpenCOR '(closes' '#1163).' commit 8fcc9af93f643a32c2c98ae767cd23bdb7506af6 Author: Alan Garny '' Date: Fri Dec 2 19:56:43 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' Some cleaning up in commit 9a63d77b22f05345c5a5cc39ee50ce8b4e0e55a8 went a bit too far... commit 1c6fd6c04f3d8e28d28df14170ce65ce95820606 Author: Alan Garny '' Date: Fri Dec 2 19:30:13 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 888bf03677bb20ace9fcf27a005902d8a5db2dff Author: Alan Garny '' Date: Fri Dec 2 18:49:50 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 8081a63729314d6d0e572f12bdc0988b2ff75448 Author: Alan Garny '' Date: Fri Dec 2 17:48:46 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 9a63d77b22f05345c5a5cc39ee50ce8b4e0e55a8 Merge: 755efa3dd b940ab734 Author: Alan Garny '' Date: Fri Dec 2 17:04:03 2016 +0100 Merge branch ''\''master'\''' into issue1163. commit b940ab73406709213f7c2f2dbe3da3ef37152f0b Author: Alan Garny '' Date: Fri Dec 2 17:03:32 2016 +0100 Slight updates to the developer documentation '[ci' 'skip].' commit 755efa3dd7fec16fffa31c6f7c73651652efea5c Author: Alan Garny '' Date: Fri Dec 2 16:25:37 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 46e19e1a9aa61f4211dd5e16e67ba9369a980911 Author: Alan Garny '' Date: Fri Dec 2 16:14:04 2016 +0100 Some minor cleaning up. commit c8273cbac9f50f961cd256025a599b4996eb693a Author: Alan Garny '' Date: Fri Dec 2 14:26:57 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 2824f42051054b4e0337c854dc52e84bf6a5dbb4 Author: Alan Garny '' Date: Fri Dec 2 14:25:48 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 4551a60482fb9d6b174cb14a84e44ae765bc164a Author: David Brooks '' Date: Fri Dec 2 20:57:45 2016 +1300 Remove unused files following merge. commit acb0fec01afa2dc6608edd851bd1da5ac58cb9cc Author: David Brooks '' Date: Fri Dec 2 20:38:55 2016 +1300 Remove unused git submodules. commit e65714a5d15b7bcdc8668e6fd11536b82c3fdcd4 Merge: 4a77c0349 e1cb0c5e9 Author: David Brooks '' Date: Fri Dec 2 17:59:45 2016 +1300 Merge branch ''\''ext_openssl'\''' into pythonplugin commit 4a77c0349f18eeced541ce490fdeb750c3879ba5 Merge: fb151505b d2dd614ee Author: David Brooks '' Date: Fri Dec 2 17:53:28 2016 +1300 Merge branch ''\''master'\''' into pythonplugin This reverts commit 5f1f00a2e4cab46a8be3623fc56ad8fa8592dd05, reversing changes made to c8a495b0cfcf7d56a5e211e966e979c40e229376. commit e1cb0c5e977c79b2d149429a9bacf7a98f632b2a Merge: afee018f1 e95ca18fe Author: David Brooks '' Date: Fri Dec 2 13:04:11 2016 +1300 Merge branch ''\''extpack'\''' into ext_openssl commit e95ca18fec834b87bb8678bfdde1204ab67e1922 Merge: 19c830b0e d2dd614ee Author: David Brooks '' Date: Fri Dec 2 13:03:38 2016 +1300 Merge branch ''\''master'\''' into extpack commit afee018f1e08b4fc97f4f270d80365ca15645cfc Author: David Brooks '' Date: Fri Dec 2 12:47:55 2016 +1300 OpenSSL now builds as an external library and plugin '(#1101).' commit a250c91809c4f135f0748b5dc726f6f4269f50e1 Author: David Brooks '' Date: Fri Dec 2 12:45:43 2016 +1300 'Don'\''t' run UPDATE step in ExternalProject_Add '(#1106).' commit 23fce74ff6d9c85bfa3c8bfe865b085d134ddfba Merge: be66d03f3 19c830b0e Author: David Brooks '' Date: Fri Dec 2 12:45:04 2016 +1300 Merge branch ''\''extpack'\''' into ext_openssl commit 19c830b0efc05faf95093f0398f73e60651ebdf7 Author: David Brooks '' Date: Fri Dec 2 12:43:54 2016 +1300 'Don'\''t' run UPDATE step in ExternalProject_Add '(#1106).' We are building against a tagged release and re-running update triggers build/configure/install steps... commit be66d03f35d6a601f9a0e42da2070013234b0729 Author: David Brooks '' Date: Fri Dec 2 12:33:42 2016 +1300 Improve package retrieval '(#1106).' Use '`PACKAGE_VERSION`' to refer to a 'package'\''s' version when generating retrieval 'code;' check that we have the expected number and order of arguments when retrieving a package. commit 07261f3455e90cf5cad19d22b73dc3c38d4a2a0a Author: Alan Garny '' Date: Thu Dec 1 18:08:35 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit e32eaffdb63a0c9b2a0a5d08d30ef73b447305bc Author: Alan Garny '' Date: Thu Dec 1 17:53:11 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit cb57dd23a4335b3a77af934f90c6c8c0f27b51e0 Author: Alan Garny '' Date: Thu Dec 1 16:37:38 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 56bb95e335faeb903d3ea12b488a3b88f5957cc2 Author: Alan Garny '' Date: Thu Dec 1 16:28:08 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 9feb934e9f96f4a73dfaba219890f4bfb8087a2f Author: Alan Garny '' Date: Thu Dec 1 16:11:09 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit af7abf35942245a5099d16bde72d390b671d5a33 Author: Alan Garny '' Date: Thu Dec 1 16:09:25 2016 +0100 Some minor cleaning up. commit 52aabd79b485b77195852b96a4db41b1142c86c7 Author: Alan Garny '' Date: Thu Dec 1 13:42:40 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit d2dd614ee246ea69b15c00815bd5fdabf9337318 Merge: 5a4c581e9 9fad3b8ff Author: Alan Garny '' Date: Wed Nov 30 20:43:31 2016 +0100 Plugins: prevented old plugins from potentially crashing OpenCOR '(closes' '#1163).' commit 9fad3b8ff16b6cde1fdc46beee73ace28574cf6c Author: Alan Garny '' Date: Wed Nov 30 17:48:18 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 65e06cf00e7ed2efad42e384c7b6e8634bb22865 Author: Alan Garny '' Date: Wed Nov 30 15:43:57 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit e9ee235237642e6bfad8b05dc9074366b3e964fc Author: Alan Garny '' Date: Wed Nov 30 15:41:28 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 00e7b840c1eb075a26bbfd8081fefd27e6124bea Author: Alan Garny '' Date: Wed Nov 30 15:30:08 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 860eed87e05bad6af484b1e0319b2de908306a7e Author: Alan Garny '' Date: Wed Nov 30 15:29:05 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit be47bc607ee9c4f1487a94ec940cf8408913cd81 Author: Alan Garny '' Date: Wed Nov 30 15:28:43 2016 +0100 Plugins: some work towards preventing old plugins from potentially crashing OpenCOR '(#1163).' commit b455a66a3a37225f6a2a01914cba02a3641ea791 Author: Alan Garny '' Date: Wed Nov 30 15:03:32 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 2d1cc21b5d86dba40d89184422c5c2a21adf811b Author: Alan Garny '' Date: Wed Nov 30 14:55:33 2016 +0100 Plugins: some work towards preventing old plugins from crashing OpenCOR '(#1163).' commit 5a4c581e9511aee299b85640ea7dfbc26c847f42 Author: Alan Garny '' Date: Wed Nov 30 11:39:03 2016 +0100 Plugins: improved the status error of a plugin when in CLI mode '[ci' 'skip].' commit bab592a0f6401ef7616ab8b0f03d70fe96c6d721 Author: Alan Garny '' Date: Wed Nov 30 10:42:48 2016 +0100 Plugins: improved the status error of a plugin when in CLI mode '[ci' 'skip].' commit 9841bb617b232a168ff3bf5fc11ab5c0edcebd34 Merge: 3f31ac7e2 dfab1e405 Author: David Brooks '' Date: Wed Nov 30 17:54:20 2016 +1300 Merge branch ''\''extpack'\''' into ext_openssl commit dfab1e4056555c266fe7acc5206b01823876fd82 Author: David Brooks '' Date: Wed Nov 30 17:53:18 2016 +1300 Merging left us with a duplicate run of install_name_tool '(#1106).' commit 3f31ac7e22a9ad6ed652ab5c406d46c0ff7fd8fc Author: David Brooks '' Date: Wed Nov 30 17:49:11 2016 +1300 Work on OpenSSL as a plugin using 'ExternalProject(#1101).' commit e47dfa43917f6e1890d6e22f3cea3815a6641eda Author: David Brooks '' Date: Tue Nov 29 08:24:47 2016 +1300 Work on adding OpenSSL as a plugin '(#1101).' commit 6f2dba6c94f13d0707c3f1f47fe4351249460407 Merge: fe87dee0e 65a2f73ad Author: Alan Garny '' Date: Mon Nov 28 18:19:06 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 65a2f73addbe4dec038aed18b2af98fe0efe1645 Author: Alan Garny '' Date: Mon Nov 28 18:04:26 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 16e90c94cd4d267c194df0b94898f832406d376e Author: Alan Garny '' Date: Mon Nov 28 18:04:05 2016 +0100 Cleaned up our various README.md files '[ci' 'skip].' commit b82d09f870d5e35dfbe7ddc8ce317cb65922ba0c Author: Alan Garny '' Date: Mon Nov 28 15:41:54 2016 +0100 Renamed '(and' cleaned 'up)' some README.txt files to README.md '[ci' 'skip].' commit fe87dee0e91dab36551798353312761d319c1e3b Merge: e89e06e96 b2ac4ea7e Author: Alan Garny '' Date: Mon Nov 28 11:17:42 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit b2ac4ea7e4ab9129c698bf251c10a720bc50b644 Author: Alan Garny '' Date: Mon Nov 28 11:13:34 2016 +0100 Renamed '(and' cleaned 'up)' some README.txt files to README.md. commit 90998732482723f8e7b9a7f4c343f7a2c060d9b0 Author: David Brooks '' Date: Mon Nov 28 23:07:09 2016 +1300 Disable SampleExternal plugin until it is updated as Travis build is failing '(PR' '#1162).' commit 78f1fd5b57fabb3cf308bc66562472819fee494c Author: David Brooks '' Date: Mon Nov 28 23:03:23 2016 +1300 Use top-level .gitignore to ignore any ./external subdirectory in a 'plugin'\''s' directory '(#1106).' commit 5a859af0e8a577a425d39ad9b3982bed46dfe5a6 Author: Alan Garny '' Date: Mon Nov 28 10:38:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 6bacff05eec0d0b404ec4909e4c9504134513d44 Author: Alan Garny '' Date: Mon Nov 28 10:26:43 2016 +0100 Removed our original README.txt and slightly cleaned up our README.md file '[ci' 'skip].' commit 5378f67aebc12c92c54a8c83431d244e673931d0 Author: David Brooks '' Date: Mon Nov 28 21:38:50 2016 +1300 Add comments describing 'zlib'\''s' build and packaging '(#1106).' commit 2cf499af321ed606fd825b49773b809a78095cda Author: David Brooks '' Date: Mon Nov 28 21:38:12 2016 +1300 Update SHA1 values for macos. commit 6e355cf72fafce26bf95d2e17fedacdc264159b3 Author: David Brooks '' Date: Mon Nov 28 17:13:31 2016 +1300 Build and package zlib under Linux '(#1106).' commit ccc213b549bc3cc94aab002ef91069a6d1ce1d76 Author: David Brooks '' Date: Mon Nov 28 16:52:43 2016 +1300 Minor tidying up. commit f5405b7239de6511160aa09d185640a0c79d009a Author: David Brooks '' Date: Mon Nov 28 16:52:20 2016 +1300 Build and package zlib under Windows '(#1106).' commit df57cc64a8a08cf6e05a907ef0463cb3644bd0d4 Merge: 62daa736d 03bb3e726 Author: David Brooks '' Date: Mon Nov 28 16:01:49 2016 +1300 Merge branch ''\''master'\''' into extpack commit 62daa736d3c5b859876f742d3945ffc235a79057 Author: David Brooks '' Date: Mon Nov 28 15:59:40 2016 +1300 Package a prebuilt zlib package '(#1106).' commit e5665d96d6225aeb3ae2e6c48b4b8ff33c9d6a36 Author: David Brooks '' Date: Mon Nov 28 15:43:29 2016 +1300 Use more meaningful variable names in helper code for package retrieval '(#1106).' commit ad77040b35c15c6a5fa5b3925ee9cc8909906809 Author: David Brooks '' Date: Mon Nov 28 15:41:34 2016 +1300 Use correct path to archive when downloading '(#1106).' commit 6f6e69e024ef56d9b99d9ef052dcdd428f5193c8 Author: David Brooks '' Date: Mon Nov 28 13:33:56 2016 +1300 Only create a 'package'\''s' archive after the package has been built '(#1106).' commit 08d4b26c3f5488d40108656003470dbb64e85101 Author: David Brooks '' Date: Mon Nov 28 10:56:24 2016 +1300 Tidy up code '(#1106).' commit 93fd33da5e6c0e47304a9887a2d2659f1b5bc9bd Merge: 3ec3d44e8 60a7e1e6a Author: David Brooks '' Date: Sun Nov 27 17:27:45 2016 +1300 Merge branch ''\''packaging'\''' into extpack commit e89e06e96e849ea20012757e345da9c4463c1fbe Author: Alan Garny '' Date: Fri Nov 25 17:52:40 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2efd55f43950cc7a63e32158c590cad6cbf3595f Author: Alan Garny '' Date: Fri Nov 25 16:42:58 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cb38bb086c88cccab571a6b4122ca93e6ee90a56 Author: Alan Garny '' Date: Fri Nov 25 16:11:18 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4fa996caf52333c584ca32334b6c5d1fa6ca4478 Author: Alan Garny '' Date: Fri Nov 25 16:08:55 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cc0b4acea2da089428c107cb0cf085eddc75aeb6 Author: Alan Garny '' Date: Fri Nov 25 16:07:29 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1117aeb38ee2bf745fd114977f5d70efc8ff1f12 Author: Alan Garny '' Date: Fri Nov 25 15:54:08 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 703a241129940d8e17a024d530eba71f907c70fd Author: Alan Garny '' Date: Fri Nov 25 15:51:58 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c21a6fd43a672aa5861c4ca1fc773d3d78dcff06 Author: Alan Garny '' Date: Fri Nov 25 13:08:51 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5423649ddadddd617d73e704b0537a0b5bd5083b Author: Alan Garny '' Date: Fri Nov 25 12:52:29 2016 +0100 Some minor cleaning up. commit 3ec3d44e8bb62508492555e40baa3f033272b8a9 Author: David Brooks '' Date: Fri Nov 25 23:27:00 2016 +1300 Correctly set the name of the zlib DLL. commit 69721475eca91df6d5ccf35c35738b1ffadaee94 Author: Alan Garny '' Date: Fri Nov 25 10:58:53 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6ee852b14595767c238cfec3c5b0ce272f205c4e Author: Alan Garny '' Date: Fri Nov 25 10:51:20 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 05a8cc39385bb2238267c5098c61af14fc6b4702 Author: Alan Garny '' Date: Fri Nov 25 10:39:09 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2492ae766b4024275ac8518e351e150b1e589ceb Author: Alan Garny '' Date: Fri Nov 25 10:24:42 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f750536276d4cb2d5ecbd3a4ca153e8fbc39e14e Author: Alan Garny '' Date: Fri Nov 25 10:20:59 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3b8a0dd3ce786a822be72940cf0594bc143c71b7 Author: David Brooks '' Date: Fri Nov 25 22:12:03 2016 +1300 We 'don'\''t' need to specify CMAKE_CONFIGURATION_TYPES when building zlib. commit 932ff7f0d6663e48f6d53694a686f6fd616cb218 Author: David Brooks '' Date: Fri Nov 25 22:11:06 2016 +1300 Keep the zlib source and build directories away from git. commit 3b52a51da3566f67defa487a8a9d4ffc40e8002b Author: David Brooks '' Date: Fri Nov 25 22:09:46 2016 +1300 We no longer need to explicitly link to libz in the plugins that use the libzlib plugin. commit c351d53588ed510fb9b3013d4c21e642ab35a106 Merge: 7e7d52d42 03bb3e726 Author: Alan Garny '' Date: Fri Nov 25 10:06:36 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 03bb3e726274569936a0e1c20b8f078dc1552b07 Author: Alan Garny '' Date: Fri Nov 25 10:05:34 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4a285d48f6d512f8e5ae6da160f75980d8d9331f Author: David Brooks '' Date: Fri Nov 25 22:04:10 2016 +1300 Set @rpath on macOS libraries when they are copied into the application bundle so that we no longer have to set it in objects that link the library '(#1159).' commit a9451afb9d8aca5dc01b516b4b7e6b7d31a6faed Merge: bb42863fa 30938a00e Author: David Brooks '' Date: Fri Nov 25 09:43:48 2016 +1300 Merge branch ''\''master'\''' into extproject commit 60a7e1e6a666a53976bb1d24b5fd2bce8e3277fe Merge: f0fd62e7f 30938a00e Author: David Brooks '' Date: Fri Nov 25 09:41:49 2016 +1300 Merge branch ''\''master'\''' into packaging commit 7e7d52d4287388b3f921a17f1ffbeba45f0855a6 Author: Alan Garny '' Date: Thu Nov 24 19:38:47 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 04c86287dc0bb82ed70dd08a93acf67d5f911825 Author: Alan Garny '' Date: Thu Nov 24 19:33:49 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 87a03b43a3785d7bcdd3dc4f19391b2c8ac6e895 Author: Alan Garny '' Date: Thu Nov 24 19:32:04 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit ac9e661cd83f24c9a466ce7c642c6b6dfcab51c8 Merge: 507a32c4a 30938a00e Author: Alan Garny '' Date: Thu Nov 24 19:20:21 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 30938a00e43447370a3f017c8ec53ce33d038958 Author: Alan Garny '' Date: Thu Nov 24 19:15:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 10eb1dbc2146a2a62f3fbb0b8208bd942bc9ae2d Author: Alan Garny '' Date: Thu Nov 24 19:14:39 2016 +0100 Improved the ''\''rejection'\''' of various dialog boxes. commit 5a83e04d17ab21b2616f0cdb465cb8bc4d7538f4 Author: Alan Garny '' Date: Thu Nov 24 19:08:33 2016 +0100 DataStore plugin: improved our data selection process '[ci' 'skip].' commit 660fc6c573dc4e1efbca6a2ccd68dc003df71015 Author: Alan Garny '' Date: Thu Nov 24 18:52:51 2016 +0100 Simplified things when it comes to information/warning/etc. dialog boxes. commit 4de0d13bff03347798b0267751cad461ed3c8152 Author: Alan Garny '' Date: Thu Nov 24 18:27:24 2016 +0100 Central widget: enable/disable the open button of the Open Remote dialog box, depending on whether there is some text for the remote file '[ci' 'skip].' commit 507a32c4af1eb14acb4a937088a99973bcacf2b0 Author: Alan Garny '' Date: Thu Nov 24 17:37:01 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2ece003a6cd2c19e38eb4c80be93e7011f7fb2e3 Author: Alan Garny '' Date: Thu Nov 24 16:44:18 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 91f406bcf8c3739491e529243bade0118939a585 Merge: 48707224a 5becc64fc Author: Alan Garny '' Date: Thu Nov 24 11:32:21 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 5becc64fc5e13a0733c79e0aa0bcf8d79be30cb9 Author: Alan Garny '' Date: Thu Nov 24 11:27:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b469d9a13657938cbd565a1a71202748e95c7a05 Author: Alan Garny '' Date: Thu Nov 24 11:25:56 2016 +0100 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit 8ffce11c92fdd0a11f54b77c7a3137a183531730. commit 8ffce11c92fdd0a11f54b77c7a3137a183531730 Author: Alan Garny '' Date: Thu Nov 24 11:25:39 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 7815db7fa6c313440180685bf27580695df16708 Author: Alan Garny '' Date: Thu Nov 24 10:20:01 2016 +0100 Some minor cleaning up following issue '#1159' '[ci' 'skip].' commit a307a130d020a0afc96975b325897179fb8d8ef1 Merge: bb4601ae8 966ca1dc9 Author: Alan Garny '' Date: Thu Nov 24 10:11:49 2016 +0100 macOS: simplified the build process when linking libraries '(closes' '#1159).' commit 48707224a262b2fd4acab712748bbccf389dee0b Author: Alan Garny '' Date: Thu Nov 24 09:59:36 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 966ca1dc9ea9628edabf1a81b3fea84d86af2b48 Merge: 0676ad3c2 bb4601ae8 Author: David Brooks '' Date: Thu Nov 24 21:10:50 2016 +1300 Merge branch ''\''master'\''' into rpath_id commit 0676ad3c26344d41cf78ba28c68b03341ecac016 Author: David Brooks '' Date: Thu Nov 24 17:17:27 2016 +1300 There is no longer any need to specify EXTERNAL_BINARIES for plugins that use API packages '(#1159).' commit e009648f12d5cfec87d2c2f29cfc2ade61670847 Author: David Brooks '' Date: Thu Nov 24 17:09:49 2016 +1300 Set @rpath on macOS libraries when they are copied into the application bundle so that we no longer have to set it in objects that link the library '(#1159).' commit bb42863fa6cec1b7afb9b205eba2f66de3c4cf61 Author: David Brooks '' Date: Thu Nov 24 16:40:19 2016 +1300 Re-enable full system build. commit 36f8a358b854ce2bb9d4d345f059f9ccf1a66419 Author: David Brooks '' Date: Thu Nov 24 11:17:34 2016 +1300 Get ExternalProject build of zlib working under Windows. commit 014c27bacfdd36fa52ba650d795919c2bd3f44b4 Author: David Brooks '' Date: Thu Nov 24 11:15:59 2016 +1300 Add new parameters to ADD_PLUGIN for future improvements to handle EXTERNAL packages. commit ff24474f45b24effd917ab7a2a3d9fbeda817917 Author: Alan Garny '' Date: Wed Nov 23 17:48:26 2016 +0100 Some minor cleaning up. commit 4d9f06c191dd00e7105a5741f7d45de7cb43590c Merge: 2841a6d51 bb4601ae8 Author: Alan Garny '' Date: Wed Nov 23 17:01:12 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit bb4601ae8db75d4875c89574fdf3dab9dc057a8c Author: Alan Garny '' Date: Wed Nov 23 16:40:18 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2841a6d51cef3e4eb83a124a433aff2d179df220 Author: Alan Garny '' Date: Wed Nov 23 16:31:44 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 90549a3e4b09d5d03b861a9c47da0f5b3d87ce40 Author: Alan Garny '' Date: Wed Nov 23 16:21:16 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5e9ec47fe25a98ed0555a6992e1900ccdc2e7cbc Author: Alan Garny '' Date: Wed Nov 23 15:38:24 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3520addbe6fdcc0d3c0e29472b7901cfdbf5d837 Author: Alan Garny '' Date: Wed Nov 23 14:46:27 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' PMR window: only show an error through a message box if we already have some exposures, which means that we $'don\342\200\231t' potentially break the $'user\342\200\231s' flow if an error occurs when starting OpenCOR. commit 275c5fc1197461b58c0ba0a2dd8b97ff2f4ed554 Author: Alan Garny '' Date: Wed Nov 23 11:22:36 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 143540e3fe753f31d02540828817b311e5b06457 Author: Alan Garny '' Date: Tue Nov 22 18:43:30 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' Not sure why up to a 30-second delay was used to show exposure files since our GUI only allows one set of exposure files to be retrieved and shown at a time, so removed all of that timer-related stuff. commit 5571631cd9d84fae32858f0c742fa2afd89f63fd Author: Alan Garny '' Date: Tue Nov 22 17:04:47 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7e368368ac7bec8ce443dda1cdc495c766455cb7 Author: Alan Garny '' Date: Tue Nov 22 15:44:33 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit ecb11495c7a21486ee8a92c1933657d7293b0a87 Author: David Brooks '' Date: Tue Nov 22 12:25:57 2016 +1300 Work on zlib as ExternalProject for Windows. commit 3cd2ae01c1fadd7a2bd4ae82e9d553e0c0be41ff Author: David Brooks '' Date: Tue Nov 22 11:54:43 2016 +1300 Fix typo. commit c965fcf2c856d8c924f637cfd07c369209fd4871 Merge: e407db275 c90e38140 Author: David Brooks '' Date: Tue Nov 22 10:13:21 2016 +1300 Merge branch ''\''master'\''' into extproject commit e407db2758be88c17231ac0f85a22b6fbb558a09 Author: David Brooks '' Date: Tue Nov 22 09:46:13 2016 +1300 TEMP: build a minimal system to test ExternalProject. commit 9ef42805df4cc207e610937979559d2ea744b6ff Author: David Brooks '' Date: Tue Nov 22 09:45:24 2016 +1300 Work on using 'Cmake'\''s' ExternalProject module for third party builds. commit 75d601b296145e9c589e87bfa0eabaf01ed77650 Author: Alan Garny '' Date: Fri Nov 18 20:44:45 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d8c8d7d8d513670ce183ac081851c793148c2e06 Author: Alan Garny '' Date: Fri Nov 18 20:44:28 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 07ada8892ecefe0114820ccf3e0b562f0532bd26 Author: Alan Garny '' Date: Fri Nov 18 15:43:17 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 59295259bab175962e52281f5ec9ffb0bd89ae78 Author: Alan Garny '' Date: Fri Nov 18 15:37:36 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 9d95ef276d072ebb35ab82f6f8ddf6167ee23830 Merge: 1fc10a63b c90e38140 Author: Alan Garny '' Date: Fri Nov 18 13:08:58 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit c90e38140dba253733b72f9c259f4499f353b507 Author: Alan Garny '' Date: Fri Nov 18 11:18:11 2016 +0100 General: fixed a small with the desktop icon not showing on Ubuntu '(closes' '#1147).' commit f1fd82bbaa07bd55d6de26e3effb82290fa6b7a7 Author: Alan Garny '' Date: Fri Nov 18 10:31:37 2016 +0100 Some minor cleaning up. commit 24c5a9aad24af426b1bc3aec18f55534fc4cced3 Author: Alan Garny '' Date: Thu Nov 17 19:39:15 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4bf505a3f0386fd3abb43025e1de6fdd7e9151ab Author: Alan Garny '' Date: Thu Nov 17 19:19:27 2016 +0100 New snapshot. commit bb984b5520f866e62e5ce18b38334a919f4bee46 Author: Alan Garny '' Date: Thu Nov 17 19:14:11 2016 +0100 Windows: now deploy the Universal C Runtime files needed by OpenCOR '(closes' '#1150).' commit 89bf9a292a30090753930ddba35c303b17f812b0 Author: Alan Garny '' Date: Thu Nov 17 13:41:14 2016 +0100 $'\020Windows:' now deploy the Universal C Runtime files needed by OpenCOR '(closes' '#1150).' commit 87c9951dfcd43ad3759e37e87a55caeed98eb183 Merge: 59c2005fe db28e8e97 Author: Alan Garny '' Date: Thu Nov 17 13:10:28 2016 +0100 Web Browser window: made sure that all Web Inspector windows are closed upon quitting OpenCOR '(closes' '#1151).' commit 59c2005fe11e483486f4a44e9473012e0a2e0349 Author: Alan Garny '' Date: Thu Nov 17 13:02:36 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit db28e8e97b1b5efbb8abf56ab6a015de723e5134 Author: Alan Garny '' Date: Thu Nov 17 11:53:24 2016 +0100 Web Browser window: some work towards ensuring that our Web Inspector windows get closed when quitting OpenCOR '(#1151).' commit 18cbd05fb384d4879810882f821ee6a61ad8842c Author: Alan Garny '' Date: Thu Nov 17 11:51:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b4952fedec9048ba2346ea51d3509451ff5b4c84 Author: Alan Garny '' Date: Thu Nov 17 11:38:40 2016 +0100 Web Browser window: some work towards ensuring that our Web Inspector windows get closed when quitting OpenCOR '(#1151).' commit 50bb49411769e389a4bc98050901ef7c983fc6f7 Author: Alan Garny '' Date: Thu Nov 17 11:21:44 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1fc10a63b460559c98d0c3d7e8692fcbc3a15f98 Merge: 237dacaa2 1e9d3da28 Author: Alan Garny '' Date: Wed Nov 16 18:35:52 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 1e9d3da280bc3d7a0dd493bed76866c5fabe4ed9 Author: Alan Garny '' Date: Wed Nov 16 18:33:49 2016 +0100 Some minor cleaning up. commit 7a21d1e69b9585633e0545e57c2d6dbd4ad5486a Author: Alan Garny '' Date: Wed Nov 16 17:40:35 2016 +0100 Raw Text view: fixed a crash that occurred when trying to save a new file '(closes' '#1155).' commit 433532652130afdde4f07e786462b294a81352a1 Author: Alan Garny '' Date: Wed Nov 16 17:39:51 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 237dacaa2bf91cfe17fd547eb3e12b7200d9acd8 Merge: c59247186 55d2c8c9b Author: Alan Garny '' Date: Wed Nov 16 17:15:37 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 55d2c8c9b223ef31926eaddcc8ef3409f60d23ef Author: Alan Garny '' Date: Wed Nov 16 17:14:38 2016 +0100 Some minor cleaning up. commit c592471864aa82259ce54ddd22b74020d2e2ebfb Author: Alan Garny '' Date: Wed Nov 16 17:07:34 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit b45a17b9ebb973dbc1467865cda25cb5d09c3a16 Merge: 88ea2fb59 34181844c Author: Alan Garny '' Date: Wed Nov 16 15:39:59 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 34181844c75580fdfaf129015dcbc8a8f34f03d8 Author: Alan Garny '' Date: Wed Nov 16 15:37:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 88ea2fb59199244b4063ed77a7244be7579c7c39 Merge: 310ce9fd9 8024ba414 Author: Alan Garny '' Date: Wed Nov 16 15:34:28 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 8024ba414ffd416f8972a253231d450028b2de6d Author: Alan Garny '' Date: Wed Nov 16 14:51:45 2016 +0100 Web Browser window: now keep track of the active URL '[ci' 'skip].' commit 172e79ba9f4d24b6785d389b656cf9d4a64dbd24 Author: Alan Garny '' Date: Wed Nov 16 14:28:37 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' Note that we $'don\342\200\231t' want, in its constructor, WebViewerWidget to go to its home page. Indeed, if we were to do that, then our Help window $'wouldn\342\200\231t' have the state of its back button updated when clicking on a new Help page '(e.g.' the $'\342\200\234What' is 'new?”' 'page).' This is because HelpWindowWidget would already have about:blank has a back item in its history. So, instead, it should be a WebViewWidget-derived class that should go to the home page, if needed '(as' is now the case with WebBrowserWindowWidget, for 'example).' commit 1951c673c880b4b0d4929017a3fa982695a098d9 Author: Alan Garny '' Date: Wed Nov 16 14:18:48 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 04edf15aa1a4b758e960445707b790635e6ba98f Author: Alan Garny '' Date: Wed Nov 16 11:03:41 2016 +0100 Some minor cleaning up '[ci' 'skip].' Well, in the end, $'it\342\200\231s' better to use 'QWebView::load()/reload()' unless 'QWebView::setUrl()' is really necessary '(e.g.' in 'HelpWindowWidget::retranslateUi()).' Indeed, if we think of the Help window, to go to a given page and then go back to the home page by clicking the home page button will result in the Help window flashing if we were to use 'QWebView::setUrl()' while there is none when using 'QWebView::load().' commit 3589cf5e6c9e7dd4f2324bb1f791698108a159b4 Author: Alan Garny '' Date: Wed Nov 16 10:38:32 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' WebBrowserWindowWindow: make sure that we keep track of the URL to be loaded so that our progress bar is always correct. commit 8327f946110583d75c239decf80fe8b775aedd97 Author: Alan Garny '' Date: Tue Nov 15 20:04:02 2016 +0100 Various cleaning up '[ci' 'skip].' Among other things, we made sure that 'load/saveSettings()' are called within a new and non-empty group... commit 110c6c86b1882f4f0039e483e9ecc3e27cd0601f Author: Alan Garny '' Date: Tue Nov 15 19:09:52 2016 +0100 Some minor cleaning up '[ci' 'skip].' 'QWebViewer->setUrl()' works better in the end '(it' loads the URL 'straightaway),' so we may as well use $'it\342\200\246' commit 43074eb8ded95829cafb05039426fa8bbf09ad3b Author: Alan Garny '' Date: Tue Nov 15 18:43:46 2016 +0100 HelpWindowWidget: some minor cleaning up '[ci' 'skip].' commit 190bedc9b22117880923240d1518084d96132e61 Author: Alan Garny '' Date: Tue Nov 15 18:31:55 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit be3f89582dc686a128f7bfc3fd62518545bb748e Author: Alan Garny '' Date: Tue Nov 15 18:30:06 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 419c35e6513642de1f77ae05b0d8cfc451a98c95 Author: Alan Garny '' Date: Tue Nov 15 18:29:46 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b09e7e098a85532eb8c1b2a5a9d1e46c4956d7be Author: Alan Garny '' Date: Tue Nov 15 17:28:39 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 0195a860299f0ec70f0693722ffe02eec683b7eb Author: Alan Garny '' Date: Tue Nov 15 16:04:53 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 25928ca225d9a2e5de2a99112af07dffe8ff1e13 Author: Alan Garny '' Date: Tue Nov 15 15:56:52 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 211e34fe19a6419ec92a339d9b151a1df7adb0e4 Author: Alan Garny '' Date: Tue Nov 15 15:39:22 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit b8647ce7ee9ec09afc819d65945b9e293c5c5982 Author: Alan Garny '' Date: Tue Nov 15 15:26:18 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 7fa944506f226820ec11109f47b2bb7518af169e Author: Alan Garny '' Date: Tue Nov 15 13:31:39 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 1ff1bc97ae7ae0560340bcd5052a57bebd03a5b6 Author: Alan Garny '' Date: Tue Nov 15 13:10:10 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 5800dd8f7510235011f8bb2988804783500cd3fa Author: Alan Garny '' Date: Tue Nov 15 13:07:59 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 4ec71f35262d26e22c9cce1b8be73001c6540921 Author: Alan Garny '' Date: Tue Nov 15 11:38:37 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 977eae2d69459615fd401ecad84793786cc18b74 Author: Alan Garny '' Date: Tue Nov 15 11:23:46 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 9372ff510898557fa955b137aafcaf4f082adca3 Author: Alan Garny '' Date: Tue Nov 15 11:06:45 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit 7fbec8005b25c5f31b0d5e2990075f9ec9a71bd4 Author: Alan Garny '' Date: Tue Nov 15 10:36:18 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156)' '[ci' 'skip].' commit f8c2c4770752570082393a0049adda56befa0177 Author: Alan Garny '' Date: Tue Nov 15 09:51:36 2016 +0100 WebViewerWidget: some work on refactoring the code from HelpWindowWidget '(#1156).' commit a348c5ceba81774700509d4788f9d3555c7e02db Merge: b4f78caef 236685599 Author: Alan Garny '' Date: Mon Nov 14 19:09:38 2016 +0100 Web Browser window: the OpenCOR URL scheme is now supported '(closes' '#1152).' commit b4f78caef059065d18f153ea7dd0c7131807b2a3 Author: Alan Garny '' Date: Mon Nov 14 18:14:20 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit 23668559965d5da44b59f4a707449e467d1864ec Author: Alan Garny '' Date: Mon Nov 14 18:10:39 2016 +0100 Web Browser window: the opencor protocol is now supported '(#1152).' commit c7d9fce7a4e007f002388179677566f8c3185d94 Author: Alan Garny '' Date: Mon Nov 14 17:46:06 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit efbd4cc84f6c1e196870610a330f2807df02a896 Author: Alan Garny '' Date: Sun Nov 13 17:14:52 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 310ce9fd95cade1ff468f1601ed6d014aa5846b7 Merge: cccbff6df 9ce5b81e8 Author: Alan Garny '' Date: Fri Nov 11 14:54:10 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 9ce5b81e882a1695a5dcad6d9fb1e03c6b00c297 Author: Alan Garny '' Date: Fri Nov 11 14:48:37 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit cccbff6df2377e81ed8812365b9b4dd9e0f7504a Merge: c6201b10e ff0874145 Author: Alan Garny '' Date: Fri Nov 11 13:41:55 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit ff0874145c8c1fdde46185b3eddceafcfe44f5f9 Author: Alan Garny '' Date: Fri Nov 11 13:40:48 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 675e46db62ffbe7d108b403a736ae03e384ddd6d Author: Alan Garny '' Date: Fri Nov 11 13:05:29 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit c6201b10edef3f19899127bbe8024a0fd0188d85 Merge: e3dea3c70 1c6a26d08 Author: Alan Garny '' Date: Thu Nov 10 19:44:54 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 1c6a26d080f20ff6659aab1e1ae76deea175ccdb Author: Alan Garny '' Date: Thu Nov 10 19:37:27 2016 +0100 Various improvements to our FileType interface. commit 87027cde5c6dc67e9068e7cdbd3e9c40697bf1af Author: Alan Garny '' Date: Thu Nov 10 19:35:33 2016 +0100 Various improvements to our FileType interface. commit a831de79e9de2fe37910e5430b04ada55ef5e05e Author: Alan Garny '' Date: Thu Nov 10 19:00:30 2016 +0100 Slight improvement to our internationalisation interface '[ci' 'skip].' commit e3dea3c707893524b8f1b4a6b8cfb337673db921 Author: Alan Garny '' Date: Thu Nov 10 18:36:57 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c4e5eb3603fa5b44b00db2ecb311a22329e86387 Author: Alan Garny '' Date: Thu Nov 10 18:36:23 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4e7c747d2232b98d3942a5a77c1b32886b5e0787 Merge: dbf2bd710 0210c6465 Author: Alan Garny '' Date: Thu Nov 10 18:03:49 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 0210c64652c8e97f05bc03b58b9b9fad349cd198 Author: Alan Garny '' Date: Thu Nov 10 17:32:10 2016 +0100 Some minor cleaning up. commit 7f83c6a8fb137a3b965975d0a1cb16187b6bf761 Author: Alan Garny '' Date: Thu Nov 10 17:06:08 2016 +0100 Some minor cleaning up. commit dbf2bd710d04c277a71abd222276fe9cbf9fb518 Merge: e8fabc3f3 803315e74 Author: Alan Garny '' Date: Thu Nov 10 11:09:25 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 803315e74a36b5f57d468e773ca844c6e40d03bb Author: Alan Garny '' Date: Thu Nov 10 11:07:24 2016 +0100 Slight update to our 'what'\''s' new page '[ci' 'skip].' commit f793acd33fd6ad71af071fbfae1aae474ab85a6a Merge: cec1e3119 300d669d8 Author: Alan Garny '' Date: Thu Nov 10 11:05:12 2016 +0100 General: fixed a small with the desktop icon not showing on Ubuntu '(closes' '#1147).' commit 300d669d8dfb30e0c0d7e471f05c4a9cc8e77015 Author: Alan Garny '' Date: Thu Nov 10 10:43:21 2016 +0100 General: some work on fixing a small problem with the desktop icon not showing on Ubuntu '(#1147).' commit 6ca5ba4f0c023de6fc855749f9bc68ebf86d9bda Author: Alan Garny '' Date: Thu Nov 10 10:41:39 2016 +0100 General: some work on fixing a small issue with the desktop icon not showing on Ubuntu '(#1147).' commit 8777fa05a27a9effec4bb94b4a67ee3afc208298 Merge: d912d2608 cec1e3119 Author: Alan Garny '' Date: Thu Nov 10 10:40:13 2016 +0100 Merge branch ''\''master'\''' into issue1147 commit cec1e311900a24bb89a661cb3f5ff9f41933fb54 Author: Alan Garny '' Date: Thu Nov 10 10:39:29 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d912d26083751d4d36c61a5b7a53f2c051fd642b Merge: ae7391081 725864cbc Author: Alan Garny '' Date: Thu Nov 10 10:31:45 2016 +0100 Merge branch ''\''master'\''' into issue1147 commit 725864cbc87f7c099c60de52d704cc951bc6a150 Author: Alan Garny '' Date: Thu Nov 10 10:31:20 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ae7391081442440d30084bd3e2728e295b588ab9 Merge: ebffe80e1 440078f11 Author: Alan Garny '' Date: Thu Nov 10 10:19:35 2016 +0100 Merge branch ''\''master'\''' into issue1147 commit 440078f1129c3b48a4cc874d671206a9c6615f59 Author: Alan Garny '' Date: Thu Nov 10 10:18:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e8fabc3f352ddab09e07f27da017d197d20241fa Merge: 21dcf0a75 ebffe80e1 Author: Alan Garny '' Date: Wed Nov 9 17:48:19 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit ebffe80e14a45ed0bc5d54db3581f6dcd9b1afaf Merge: 6e578f49a 876ce9f9f Author: Alan Garny '' Date: Wed Nov 9 17:43:42 2016 +0100 libgit2: upgraded to version 0.24.3 '(closes' '#1145).' commit 6e578f49ac30deddf352eadec245962193b1469e Author: Alan Garny '' Date: Wed Nov 9 17:15:10 2016 +0100 Slight updates to the downloads pages '[ci' 'skip].' commit 876ce9f9fcac8f267bf991651985c8927b016158 Author: Alan Garny '' Date: Wed Nov 9 17:09:15 2016 +0100 libgit2: some work towards upgrading to version 0.24.3 '(#1145).' commit 3a74a52d03722d34765de3498d704cf188e104ea Author: Alan Garny '' Date: Wed Nov 9 16:57:46 2016 +0100 libgit2: some work towards upgrading to version 0.24.3 '(#1145).' commit bdd5aa145482cf56579ab8eb4c132bcc307b146d Author: Alan Garny '' Date: Wed Nov 9 15:06:47 2016 +0100 New snapshot. commit b97535a0ac39caec1863fddc0f7015ce6560faeb Author: Alan Garny '' Date: Wed Nov 9 15:05:09 2016 +0100 Revert '"New' 'snapshot."' This reverts commit 73826ebaa8177eb609fa45ab760b0473161b5925. commit 73826ebaa8177eb609fa45ab760b0473161b5925 Author: Alan Garny '' Date: Wed Nov 9 14:55:23 2016 +0100 New snapshot. commit 83bb47a24a10827e1da3dad4f2d0b1d3f04d1f12 Author: Alan Garny '' Date: Wed Nov 9 14:47:15 2016 +0100 Web Browser window: put in the correct category '(Miscellaneous)' and created a '(blank' for 'now)' documentation page for it '[ci' 'skip].' commit 5c45502b96fcfe6e3d0268d96dbe802c99e28eb6 Author: Alan Garny '' Date: Wed Nov 9 14:41:09 2016 +0100 Revert '"New' 'snapshot."' This reverts commit 85dabef9ec20fa4c068d799ae3a62ff749e6761f. commit 85dabef9ec20fa4c068d799ae3a62ff749e6761f Author: Alan Garny '' Date: Wed Nov 9 13:32:07 2016 +0100 New snapshot. commit 21dcf0a75b2b65094a0dcc5fd35217841115b94e Author: Alan Garny '' Date: Wed Nov 9 13:04:17 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3136b269950afb9d5b95d6bd7cec50183c24c411 Author: Alan Garny '' Date: Wed Nov 9 13:02:25 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 816b008da7f5670f98f70752f1a26ea896e209de Merge: 94655b0c6 d826c24c9 Author: Alan Garny '' Date: Wed Nov 9 11:45:25 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit d826c24c9905600d947b1e85d46dd1fee1a1589b Author: Alan Garny '' Date: Wed Nov 9 11:43:02 2016 +0100 PMR window: improved the GUI. We used to have a proper button for the reloading of the list of exposures, but it $'didn\342\200\231t' really look good. So, instead, we now have another tool bar with our filter label/value and reload button. commit a90b695787f4fe2b3be557b9dfce2ddace24ecf5 Author: Alan Garny '' Date: Wed Nov 9 11:03:35 2016 +0100 Web Browser window: improved the GUI. We used to have a proper button for the reloading of a page, but it $'didn\342\200\231t' really look good. So, instead, we now have another tool bar with our URL value and reload button. commit 94655b0c6e0f94124bad91f4be88702f3168fb96 Author: Alan Garny '' Date: Mon Nov 7 17:59:54 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cd7492c157b773658e00d2387b1b936b5cb32329 Author: Alan Garny '' Date: Mon Nov 7 17:24:00 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' Also $'it\342\200\231s' nice to see the progress of, say, cloning a workspace, there are cases where we $'can\342\200\231t' get the progress of an action '(e.g.' retrieve a $'user\342\200\231s' 'workspaces).' So, to avoid having to determine when we should be having a progress busy widget or a simple one, as well as handling different types of busy widgets in the PMR and PMR Workspaces window, we now only use a simple busy widget. commit a921c93672e3f3f2697fd30af2860813e87c40e0 Author: Alan Garny '' Date: Mon Nov 7 16:47:15 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c8ee2c87537ebe6112af4babcbc4d07ac2f83b2a Author: Alan Garny '' Date: Mon Nov 7 15:57:41 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 327f53e124b0e35916844c03de868be7adc39f4c Merge: 8db7f2900 392bc28fb Author: Alan Garny '' Date: Mon Nov 7 14:46:38 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 392bc28fb4bf8fd7692769a387fadff956d17cbd Author: Alan Garny '' Date: Mon Nov 7 14:46:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8db7f29001e94fe269db84b8a65b5ca518f77c91 Author: Alan Garny '' Date: Mon Nov 7 10:23:53 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit aaaa7a614de687c82013ec9bd4422ebc57691398 Author: Alan Garny '' Date: Fri Nov 4 18:39:44 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1cd9daa5448c350b8a4a3c07c9245b44c1bc0a4c Author: Alan Garny '' Date: Fri Nov 4 18:21:00 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5a0fb3fcbad1800f374bd35534d344d0e8753ded Author: Alan Garny '' Date: Fri Nov 4 17:08:27 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit ac8dda7b2f34ebc8881f9f08c62a57ea8744739b Author: Alan Garny '' Date: Fri Nov 4 16:30:06 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 51f7cffe68c31e14c6aeb117094817566096a74b Author: Alan Garny '' Date: Fri Nov 4 16:07:40 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 00e58b18e94d6cd389b12c8e209d183dade44b05 Author: Alan Garny '' Date: Fri Nov 4 16:04:10 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4bb76f11c71a3846cd17665859377e2d399d6f89 Author: Alan Garny '' Date: Fri Nov 4 15:35:15 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit da3946b601f48b11a0cdaeb4ed37385e5bc049fa Author: Alan Garny '' Date: Fri Nov 4 15:26:23 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit da6327e08210ff2cbadc05f886ef07cc8b846f78 Author: Alan Garny '' Date: Fri Nov 4 15:20:24 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cd47bf9dac88817721ec7a297f5fe5cdde72e90e Author: Alan Garny '' Date: Fri Nov 4 15:14:34 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 383f162c82ba610910be0e35c9bb69ba007e37e9 Author: Alan Garny '' Date: Fri Nov 4 15:11:58 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 85d0300ae5d8b63f5426120c5242a3ad3fe42e43 Author: Alan Garny '' Date: Fri Nov 4 15:01:10 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d571732023a0968bec6fdfdec4b8ee9f1e94f978 Author: Alan Garny '' Date: Fri Nov 4 14:59:59 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 652742d51b2df0274adde4ecfa9f53b74c32a2cb Merge: 5d978d0f6 a3e5b4934 Author: Alan Garny '' Date: Fri Nov 4 14:58:20 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit a3e5b4934016410d566974ab1e4ae8f908112675 Author: Alan Garny '' Date: Fri Nov 4 14:58:06 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 5d978d0f671825ac8dcbb93bb9476e97a57e7e61 Author: Alan Garny '' Date: Fri Nov 4 14:57:33 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit aa7d505beee936e59458a9e1c3eb66e8b0a5f150 Author: Alan Garny '' Date: Fri Nov 4 14:54:17 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 98d32eeaf2781bf0279d538d26591fd335b6a394 Author: Alan Garny '' Date: Fri Nov 4 14:02:15 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit aff354f6fb2093e25549dd567936089ae0ebb5b3 Merge: 4129ed074 fbe1e5493 Author: Alan Garny '' Date: Fri Nov 4 13:31:45 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit fbe1e54931f24f57bbe40b0abb8ed610098cd4de Author: Alan Garny '' Date: Fri Nov 4 13:31:24 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4129ed074b6589df6398ae924832675e9fef456d Author: Alan Garny '' Date: Fri Nov 4 13:25:50 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 789fc2363df6da389b37fadc8944045b2a8a9008 Author: Alan Garny '' Date: Fri Nov 4 11:51:18 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 532f01f0554b68a11961571a06beea79e10b04e3 Author: Alan Garny '' Date: Fri Nov 4 11:49:23 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 90ca97891b928e6cfc306c7b7e77abd81c5fbea0 Author: Alan Garny '' Date: Fri Nov 4 11:32:41 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 08b4204f9883f471be5ce4c6d184a55d19acc8e5 Author: Alan Garny '' Date: Fri Nov 4 11:30:17 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2a6103150597251dbc9ad4ac098ddc445774cbbc Author: Alan Garny '' Date: Fri Nov 4 11:28:57 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cf77e5a0e3e1f94399c69f67e1ea4af5fed12a4f Author: Alan Garny '' Date: Fri Nov 4 11:20:25 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 47a141c6eae808a63a26c3f0006489f35bf0f123 Author: Alan Garny '' Date: Fri Nov 4 11:14:23 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit bd63f7c5ca70bfc956ed01d942af2420416b5c3c Author: Alan Garny '' Date: Fri Nov 4 11:03:40 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a8c1f6874bdd3840529cecde0d14c5a87ec1aab6 Author: Alan Garny '' Date: Fri Nov 4 10:11:14 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit aeb88d941733b9f7a2d7d9508dcda52e5574355a Author: Alan Garny '' Date: Thu Nov 3 11:31:42 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a481b62a6a802bf0a206ac42c6732e7906c6383a Author: Alan Garny '' Date: Thu Nov 3 11:24:25 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a7abdfb6733a0b320eec82bcda10d305f2920036 Author: Alan Garny '' Date: Wed Nov 2 18:41:54 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7870e504c57cc6781582d3a27bf17c3ff6cced66 Author: Alan Garny '' Date: Wed Nov 2 18:29:39 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4c2a998eedb287f8258e986d44502325dad4fab1 Author: Alan Garny '' Date: Wed Nov 2 18:15:14 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7aa58e24993363524f5ccc4c2663ac96c66bf225 Author: Alan Garny '' Date: Wed Nov 2 18:04:55 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3c4580d456cadb7dd136d09239a047dd18bfb33d Author: Alan Garny '' Date: Wed Nov 2 17:50:11 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 57abb236fbf0fba8bd2778ace17237c039633896 Author: Alan Garny '' Date: Wed Nov 2 17:48:15 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 131eb00899239041151155e69cabb74750cdf58a Author: Alan Garny '' Date: Wed Nov 2 17:35:41 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 24b0b897a17a3a5fc82fe9925f46644bd01d83b0 Author: Alan Garny '' Date: Wed Nov 2 17:14:33 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 12456105d30a28a6c447e035beee088c53bef919 Author: Alan Garny '' Date: Wed Nov 2 17:10:24 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cedb17a1fb9e06045ce078c97a1c25516f84ff08 Author: Alan Garny '' Date: Wed Nov 2 16:49:28 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f5afa13d29e3a671e4da3ff94bcd7d789ec2275b Author: Alan Garny '' Date: Wed Nov 2 16:28:50 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7aca8cc2b8861c32ed31c06544119443219fcc83 Author: Alan Garny '' Date: Wed Nov 2 16:28:04 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a08c80f01d9ac5e5b83f9a7aede2763d2974a816 Author: Alan Garny '' Date: Wed Nov 2 16:25:04 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6a345800833c77a189d28803b43abeb78df10cdb Author: Alan Garny '' Date: Wed Nov 2 16:18:35 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e095774ffb2228f5ae5331af1c3e8510da04d7b1 Author: Alan Garny '' Date: Wed Nov 2 16:18:03 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 31bbaa0af539277ea7d1142cf779d409702a926c Author: Alan Garny '' Date: Wed Nov 2 16:17:39 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 583061f10c9eb5a45bbea84d96449abbee70ff17 Author: Alan Garny '' Date: Wed Nov 2 15:24:06 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2a9ffeb41b944253e8c8506560b4aa0b838839df Author: Alan Garny '' Date: Wed Nov 2 15:19:46 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b32e029e4ba370aae291834c0666435d56428439 Author: Alan Garny '' Date: Wed Nov 2 14:50:45 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 7ad8a90cde64eff3df3f75f8d6376126cb702496 Merge: 23ef4e17a dd53b3424 Author: Alan Garny '' Date: Wed Nov 2 14:32:01 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit dd53b3424e7853ff96d790f7140a03a4390ce320 Author: Alan Garny '' Date: Wed Nov 2 14:29:14 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9e28b7faffb3d3a3375e88218071650b48cd1574 Author: Alan Garny '' Date: Wed Nov 2 14:27:43 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 23ef4e17abefe5c67b54546646a93f9c2bea8039 Author: Alan Garny '' Date: Wed Nov 2 13:56:46 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 16335ff577c56b7b2ded96865895b986a18303da Author: Alan Garny '' Date: Wed Nov 2 13:34:44 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a4642e079d50d1595e2a08ea2599d55995c442f3 Author: Alan Garny '' Date: Wed Nov 2 13:16:14 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4b45068feb3f5d98bf3fee9e1dcfa3b25ab447c6 Author: Alan Garny '' Date: Wed Nov 2 12:51:59 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f635747225e6ff9189f2e4ed64a29ab7da8e0968 Author: Alan Garny '' Date: Wed Nov 2 12:42:18 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b68789f8efcff8a4146c389705cf248f514ef09d Author: Alan Garny '' Date: Wed Nov 2 11:47:24 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 7515b9724d3add2c1cb831974414cf731c854dbf Author: Alan Garny '' Date: Wed Nov 2 11:45:34 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b20f64f907fec9c13e79f5ca164d14bccd0ef459 Author: Alan Garny '' Date: Wed Nov 2 11:07:16 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 09b954a5f096c14af18461bc81d40ecd111b36fe Author: Alan Garny '' Date: Wed Nov 2 10:54:26 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3100586c2a1762f2598dd81b886458aee96b138a Author: Alan Garny '' Date: Wed Nov 2 10:47:19 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a8100a840570c0aa290eda478c3d1208683c3b68 Author: Alan Garny '' Date: Wed Nov 2 10:24:22 2016 +0100 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 9dc6bac7f005756b82e2ca66e2f6117235eb2df2 Merge: 097fa0a10 6e4098c10 Author: Alan Garny '' Date: Wed Nov 2 09:51:46 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 6e4098c10fc912a8ddd16576756c13b6d8f181c9 Author: Alan Garny '' Date: Wed Nov 2 09:51:05 2016 +0100 Slight update to the 'user'\''s' documentation '[ci' 'skip].' commit 097fa0a101f05687af2c6933487638eb5450feb3 Merge: 3ab9f9db1 e5a89a1e6 Author: Alan Garny '' Date: Mon Oct 31 19:04:32 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit e5a89a1e6e2cf7379f640dd1b8bf88882526bc25 Author: Alan Garny '' Date: Mon Oct 31 19:00:42 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3ab9f9db13cddebb38ddc35de64ac198daba0cf9 Merge: 2c51e1555 69d4c9ab0 Author: Alan Garny '' Date: Mon Oct 31 10:13:24 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 2c51e15551dc10892c72038aff2fc0be52e53d0d Merge: 4be08ef20 229c3a8f7 Author: Alan Garny '' Date: Mon Oct 31 10:13:20 2016 +0100 Merge branch ''\''master'\''' into issue1141. commit 69d4c9ab02ba6ea0ecc069b8f478e0424956a739 Author: Alan Garny '' Date: Mon Oct 31 10:12:46 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 229c3a8f7a4f19dae3f9544fbfd01b8350e30940 Author: Alan Garny '' Date: Mon Oct 31 10:00:24 2016 +0100 Going back to a simpler management of some objects '[ci' 'skip].' commit 236019aa1f1bbcfb29e6dcb6e89287dce3b2f8cd Author: Alan Garny '' Date: Mon Oct 31 09:53:59 2016 +0100 Going back to a simpler management of some objects '[ci' 'skip].' commit 3819f1d8fb7b5c0e0c7b57d14e9a2f3bc7a1db8d Author: Alan Garny '' Date: Mon Oct 31 09:42:32 2016 +0100 Going back to a simpler management of some objects '[ci' 'skip].' commit 14fdfed0b93344293972bc4dc476919f82ebe4e3 Author: Alan Garny '' Date: Mon Oct 31 09:33:54 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ebf55f09b1c72c7b7d04ad2091975732e2b206c3 Author: Alan Garny '' Date: Sun Oct 30 21:02:56 2016 +0100 Going back to a simpler management of some objects '[ci' 'skip].' commit 85f3c8148734c8f0e2bdd463d880dd526e68567e Author: Alan Garny '' Date: Sun Oct 30 20:05:19 2016 +0100 Some minor refactoring '[ci' 'skip].' commit cee9161ad47790280070f77762b18aecd78bea3b Author: Alan Garny '' Date: Sun Oct 30 19:09:37 2016 +0100 Slight improvements to CombineArchiveIssue and CombineArchiveIssues '[ci' 'skip].' commit 1fd22b64ca2fcca7ed93207250078e0d64e7d9e6 Author: Alan Garny '' Date: Sun Oct 30 19:06:46 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2cb3ec5a374aeed9bbc04e992459e52d6c712748 Author: Alan Garny '' Date: Sun Oct 30 18:48:26 2016 +0100 Slight improvements to CombineArchiveIssue and CombineArchiveIssues '[ci' 'skip].' commit 12fe3883be6093cfac1e87562dd79fe76750657c Author: Alan Garny '' Date: Sun Oct 30 17:33:50 2016 +0100 Some minor refactoring '[ci' 'skip].' commit de7957431ce042455ecad72a7568875cc1c62a3a Author: Alan Garny '' Date: Sun Oct 30 16:20:53 2016 +0100 Slight improvements to SedmlFileIssue and SedmlFileIssues '[ci' 'skip].' commit 997a0400943b774c53206cccdf9e3ac52e70117c Author: Alan Garny '' Date: Sun Oct 30 16:02:10 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit bbcca374605d1ff21425e3b8762d74e6d7074c66 Author: Alan Garny '' Date: Sun Oct 30 15:29:49 2016 +0100 Some minor refactoring '[ci' 'skip].' commit 22f0210eaf65ea262e3e7623bded1040ca017066 Author: Alan Garny '' Date: Sun Oct 30 15:22:11 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 7df015228d248f1e45bab1d9e6dbb22ea9ed6867 Author: Alan Garny '' Date: Sat Oct 29 20:41:31 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4ba21d20f3657f26734abfaeeb9203b6fefa06c5 Author: Alan Garny '' Date: Sat Oct 29 20:41:19 2016 +0200 Slight improvements to CellmlFileRdfTriple and CellmlFileRdfTriples '[ci' 'skip].' commit fdefb9a2e4d7133d3e33a37aa980294d092bf48c Author: Alan Garny '' Date: Sat Oct 29 20:31:26 2016 +0200 Slight improvements to CellmlFileRdfTriple and CellmlFileRdfTriples '[ci' 'skip].' commit 7efc11ca4e7d7f614b19d794a44b7d1a6362d570 Author: Alan Garny '' Date: Sat Oct 29 20:21:08 2016 +0200 Slight improvements to CellmlFileRuntimeParameter and CellmlFileRuntimeParameters '[ci' 'skip].' commit 6d806b0e3d59e7490b91d090fc787f3c37c4e121 Author: Alan Garny '' Date: Sat Oct 29 20:15:46 2016 +0200 Slight improvements to CellmlFileIssue and CellmlFileIssues '[ci' 'skip].' commit f56a47991f0f56869b9fe8672a480a9202aea744 Author: Alan Garny '' Date: Sat Oct 29 17:43:35 2016 +0200 Slight improvements to Plugin and Plugins '[ci' 'skip].' commit fa7eca68782872755072df03109b7f16bc24215a Author: Alan Garny '' Date: Sat Oct 29 17:42:13 2016 +0200 Windows: import/export PmrExposures '(just' in 'case)' '[ci' 'skip].' commit 062a5a42cb6eab93dbebbd4ec905ffe847a27eb7 Author: Alan Garny '' Date: Sat Oct 29 17:32:26 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 90def9ebdb67cc7a438e469d0f2de42705918878 Author: Alan Garny '' Date: Sat Oct 29 17:25:37 2016 +0200 Slight improvements to CellmlAnnotationViewMetadataEditDetailsItem and CellmlAnnotationViewMetadataEditDetailsItems '[ci' 'skip].' commit 2528a09bba706393b899b411271f837cf6bbccac Author: Alan Garny '' Date: Sat Oct 29 16:53:37 2016 +0200 Slight improvements to DataStoreVariable and DataStoreVariable '[ci' 'skip].' commit 4be08ef2003dbbee5c6d002071519542534e3af2 Author: Alan Garny '' Date: Sat Oct 29 13:52:44 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 9179df7fe0166541d9ce21de697b43ff0c5fd3bf Author: Alan Garny '' Date: Fri Oct 28 18:04:06 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e9c21d7854c62cfc1b2892c2acc8099c39cef217 Author: Alan Garny '' Date: Fri Oct 28 17:39:17 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 319bc326cca89aa0bd2d4d1896953a766c457c9a Author: Alan Garny '' Date: Fri Oct 28 16:45:52 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 31154f2f7c027f80f3760cbf8a0a91996e8d829f Author: Alan Garny '' Date: Fri Oct 28 16:13:48 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2b9fad8bc2c28fecf88a60318a45f7e0974d8366 Author: Alan Garny '' Date: Fri Oct 28 14:54:36 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit cd8cad32d113c482705a32bef200655b7d23e289 Author: Alan Garny '' Date: Fri Oct 28 14:47:08 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 82ec8a8e490f533325ccfbf95e8df9625ffa4b15 Author: Alan Garny '' Date: Fri Oct 28 13:55:03 2016 +0200 Revert '"PMR' Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141)."' This reverts commit f9fc5ca5cd2fed53d59202f25bc2102d6443fee5. commit f9fc5ca5cd2fed53d59202f25bc2102d6443fee5 Author: Alan Garny '' Date: Fri Oct 28 13:52:45 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e2e8c5d0fd2fe1a005a88f9ec11509ef65f79817 Merge: 0b2397da1 e2efc08bd Author: Alan Garny '' Date: Fri Oct 28 13:46:00 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit e2efc08bd6d5350c753f7c89d88032998c75d28b Author: Alan Garny '' Date: Fri Oct 28 13:45:08 2016 +0200 Slight update to the 'developer'\''s' documentation '[ci' 'skip].' commit 0b2397da1dc3d479964ff6841feaec0733fad807 Author: Alan Garny '' Date: Fri Oct 28 13:24:26 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 26cf99aaf4b2e9c61650f534b54e873ce169f560 Author: Alan Garny '' Date: Fri Oct 28 13:22:04 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5ca81154f16cb94485ba9ded7006c958bc732952 Author: Alan Garny '' Date: Fri Oct 28 13:06:59 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1ad51a908a4cedc46da6856bf9f403c36c8fba3d Author: Alan Garny '' Date: Fri Oct 28 13:02:33 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a103e43282c5adeab33f53c79322215adc315b04 Merge: a9ffcf541 620514f49 Author: Alan Garny '' Date: Fri Oct 28 11:24:22 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 620514f49849ae4f654d25651cb4f0a792adbcfa Author: Alan Garny '' Date: Fri Oct 28 11:18:23 2016 +0200 Data store: made it possible to select a group of data '(closes' '#1143).' commit 40a0843b33e38ff82bcf8b08a456f4885d55ef92 Author: Alan Garny '' Date: Fri Oct 28 10:56:49 2016 +0200 Slight update to the 'developer'\''s' documentation '[ci' 'skip].' commit a9ffcf541ed6272b33bb39ce3420087e6d039995 Author: Alan Garny '' Date: Fri Oct 28 10:37:12 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e33e8be7810b0d6933a85bb1323b21522f8a8510 Author: Alan Garny '' Date: Fri Oct 28 09:54:36 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 601d4e3bab9584e3768f26d43d505b7d1201ffc4 Author: Alan Garny '' Date: Thu Oct 27 18:03:34 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3b00d03658c71ac1ad29cf8a8b093afd67f52f45 Author: Alan Garny '' Date: Thu Oct 27 17:41:52 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit ebf1d1a8390da5edb8eceda5ea4a52cb17b82619 Author: Alan Garny '' Date: Thu Oct 27 17:28:19 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 90987bad5271bbf9b84d36c0b0f0ecb176a8fe31 Author: Alan Garny '' Date: Thu Oct 27 17:05:49 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5cb2c44a274a216d5abc1bb7b5ad842275238e70 Author: Alan Garny '' Date: Thu Oct 27 16:54:06 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 513a79641ce0f7d802468948641089ba07e9469a Author: Alan Garny '' Date: Thu Oct 27 16:03:27 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 57422239526072c74548cc5cd0cba572330328ce Author: Alan Garny '' Date: Thu Oct 27 16:01:10 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e3a63a46fd302806a27c306e6a500c9511043379 Author: Alan Garny '' Date: Thu Oct 27 15:35:46 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 08eb4ed9bacbfd8500ea256c0293cd519a2e9328 Author: Alan Garny '' Date: Thu Oct 27 15:32:26 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit a7c11716c12e14fa53787d2c0aba69b3968d49ce Author: Alan Garny '' Date: Thu Oct 27 14:48:14 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 05b55aaf0dca48b5ffb33931d255c1aa0100ef1c Author: Alan Garny '' Date: Thu Oct 27 13:32:18 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3e41d8521730077102711969b4c853257696a604 Author: Alan Garny '' Date: Thu Oct 27 13:07:13 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e3efdfcc32f75a1ae6d84700001551f6dc2348ee Author: Alan Garny '' Date: Thu Oct 27 11:19:15 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c8cb5c089aec08fb202e9cf716ec9196d3d6a4a1 Author: Alan Garny '' Date: Thu Oct 27 11:00:07 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 8d92d856cf1a10cb22c76a03cb4c611ce91d1532 Merge: 2c5b10637 2556f2728 Author: Alan Garny '' Date: Thu Oct 27 10:49:24 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 2556f2728be867b2308ed887e84fb37d063fdeb8 Author: Alan Garny '' Date: Thu Oct 27 10:47:11 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit acb898598c5ccb512fa090d8995b89105ebbbcf3 Author: Alan Garny '' Date: Wed Oct 26 19:40:06 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2c5b106377f4b9069b3632ad364b52e495821840 Author: Alan Garny '' Date: Wed Oct 26 18:05:45 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 86f76e8bfe637040e4bb382d03b2a39384019c69 Author: Alan Garny '' Date: Wed Oct 26 17:52:52 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 9194d6d1e40bf5afb41ffc3899487993fa4c28e8 Author: Alan Garny '' Date: Wed Oct 26 17:36:05 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 32f2e1b18787f2d4f2a495692a7f5b63dc70d42c Merge: 50bb7008b 49bf2c95b Author: Alan Garny '' Date: Wed Oct 26 16:50:51 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 49bf2c95b345fa703acf5467176ee8e1fafc5e61 Author: Alan Garny '' Date: Wed Oct 26 16:50:30 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 50bb7008b2f79c4562062763fc40aa4b64a06857 Merge: 9c1cd18de 513cfeb9c Author: Alan Garny '' Date: Wed Oct 26 16:42:24 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 513cfeb9cf061d2f14513e70af95769a83068891 Author: Alan Garny '' Date: Wed Oct 26 16:40:00 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9c1cd18deb7b57a70a4a36d5044603d6d68fbf59 Merge: 4799ef875 96e180d57 Author: Alan Garny '' Date: Wed Oct 26 16:30:51 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 96e180d57343ffea913803404b7aa6ff77c1a465 Author: Alan Garny '' Date: Wed Oct 26 16:30:37 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4799ef8755293c4db863f9cf13c182d158811f46 Author: Alan Garny '' Date: Wed Oct 26 14:58:24 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1da15149645c78053cc24d942fa41ba3410de79d Merge: e8801a0e7 886b38d26 Author: Alan Garny '' Date: Wed Oct 26 11:34:57 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 886b38d26551bb401fa7516f8e924ad40b815a6f Author: Alan Garny '' Date: Wed Oct 26 11:32:40 2016 +0200 Some minor cleaning up '[ci' 'skip].' Replaced things like typedef 'QList' 'MyTypes;' with class MyTypes : public 'QList' '{' public: void 'sort();' private: static bool 'compare(MyType' '*pType1,' MyType '*pType2);' '};' when sorting on such a list is needed. commit e8801a0e7d7a2b369b16dcd895ae1d28d7ae2645 Author: Alan Garny '' Date: Wed Oct 26 10:28:51 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d8900386b753cb04e6093517b6d7bdcf3cf33169 Merge: fbe3719bf f4c2afe87 Author: Alan Garny '' Date: Tue Oct 25 16:25:51 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit f4c2afe872761d82a1ac5f21f94a89ede233a63b Author: Alan Garny '' Date: Tue Oct 25 16:25:30 2016 +0200 Web Browser window: added a progress bar and a way to inspect things in a web page '[ci' 'skip].' Related to issue '#1115.' commit fbe3719bfc178c55cbe536be071bdadcfb492397 Merge: 3785ca077 4b7b5cf56 Author: Alan Garny '' Date: Tue Oct 25 15:39:49 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 4b7b5cf5643c8ebb66a0648317c4148085179352 Author: Alan Garny '' Date: Tue Oct 25 15:39:19 2016 +0200 Web Browser window: added a progress bar and a way to inspect things in a web page '[ci' 'skip].' Related to issue '#1115.' commit a90ad589a32d48c2191aca00cbfc2730b727314a Author: Alan Garny '' Date: Tue Oct 25 15:01:08 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3785ca077007fc608707d4fad2911859487b0dea Author: Alan Garny '' Date: Tue Oct 25 14:16:17 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit bdb756a784d49d07fd9b2c68093e10d87579939c Author: Alan Garny '' Date: Tue Oct 25 10:20:50 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6ac2a7f1ec0d755d0bcb75d8c2f09a3d2880691a Merge: 0e4884691 dfe0a1e7c Author: Alan Garny '' Date: Tue Oct 25 10:08:07 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit dfe0a1e7cf5cb7ae6c24dad631b2ec7599f75a2f Author: Alan Garny '' Date: Tue Oct 25 10:06:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0e4884691165d32c3dc74e430b0567944612bb60 Author: Alan Garny '' Date: Tue Oct 25 10:02:53 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 86498722236ca0daa37f9a4f7cc866ec13420b13 Author: Alan Garny '' Date: Tue Oct 25 09:29:49 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 0b4d38e29a2afab0437152375f65770be26c98cc Author: Alan Garny '' Date: Mon Oct 24 19:11:55 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 065cbff0a9991038c9cfac26739eed6600dba7ec Author: Alan Garny '' Date: Mon Oct 24 18:51:10 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 41634e154923cef94fc23b17128f0668ccf8a8ec Merge: 015aeb474 273583b99 Author: Alan Garny '' Date: Mon Oct 24 18:19:53 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 273583b9969b3e92906e1a800da734b4c315330f Author: Alan Garny '' Date: Mon Oct 24 18:19:20 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 015aeb474bdcdc71034834921c10e5732383fe80 Author: Alan Garny '' Date: Mon Oct 24 18:12:11 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit ccbbb03ee7d832c456e079bd87d02b97fb95c33f Author: Alan Garny '' Date: Mon Oct 24 17:50:44 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e6a25619d8805b5752a5628a98234cb79ce1ca57 Author: Alan Garny '' Date: Mon Oct 24 16:53:15 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4ab67ecc2729310b8f6d5185d92ca1a809dafb1d Author: Alan Garny '' Date: Mon Oct 24 16:33:34 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d8f03fc686f852052e76ff4c84dce08a1585b8d6 Author: Alan Garny '' Date: Mon Oct 24 15:56:14 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 702cb7f27ed91624a000de56ac60f306a43b7316 Author: Alan Garny '' Date: Mon Oct 24 15:49:41 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit dbaa7be9b21979db3eb079d0f80b405a6d87d3e2 Author: Alan Garny '' Date: Mon Oct 24 15:46:07 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 5dc0247d195adbb03c442e0316fb195114984fc2 Author: Alan Garny '' Date: Mon Oct 24 15:09:09 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit b1d7950bec9c1cbdf8bc59ae7dae033975a8b06f Author: Alan Garny '' Date: Mon Oct 24 13:43:22 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 85c5651b8476912572ec54577e6aa33a83ece334 Author: Alan Garny '' Date: Mon Oct 24 13:37:22 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 8d86a6f7d54fb982ffe7c72028c30f6f301acbc0 Author: Alan Garny '' Date: Mon Oct 24 13:21:33 2016 +0200 Revert '"PMR' Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141)."' This reverts commit 4065b248df0d7c5fe4beecd11a34b7ce413ad992. commit 4065b248df0d7c5fe4beecd11a34b7ce413ad992 Author: Alan Garny '' Date: Mon Oct 24 13:12:13 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit ececf4edf14b5752d2c18c5bf38b87d4849d268f Author: Alan Garny '' Date: Mon Oct 24 11:52:09 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e440ba937b5eebbc3929d4bf6cb6f0bc20b6c72f Author: Alan Garny '' Date: Mon Oct 24 11:18:58 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4742f41ec1e0ac3fcd971772af9f34a6fc8baab4 Author: Alan Garny '' Date: Mon Oct 24 10:19:41 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d482245fb08dbcd91161186605b658b01b01570e Author: Alan Garny '' Date: Mon Oct 24 10:14:06 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e9b9f570dd2eb424248f2231b86c3ffb3a843a4a Author: Alan Garny '' Date: Sun Oct 23 14:14:10 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 08e0ceb41f2fa140e82ad281f53969fcad6b13b4 Author: Alan Garny '' Date: Sun Oct 23 14:05:45 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 175e681d118e8276e1c318b78f98c25ca19adbd7 Author: Alan Garny '' Date: Sun Oct 23 13:13:21 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 4e777497826b318a7a8686c3a3d4d42b68d88255 Author: Alan Garny '' Date: Sun Oct 23 11:20:33 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 937385e5f33df77ecdf7b396826e0c9de6f1babc Author: Alan Garny '' Date: Sun Oct 23 10:37:52 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2b8ab93121bc054b455eaa6f1ca4006d52c1d107 Merge: 1863c0c2a 9c6e810de Author: Alan Garny '' Date: Sun Oct 23 10:28:45 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 9c6e810de7f0c405bf54fb4d1c5c0b72fb7762ee Author: Alan Garny '' Date: Sun Oct 23 10:28:24 2016 +0200 Fixed a small build regression that prevented us from building OpenCOR on its own '(i.e.' without any 'plugins).' commit 2dc91e8cdf211316001053011c9b6609bf4b8fe4 Author: Alan Garny '' Date: Sun Oct 23 10:27:47 2016 +0200 Slight improvement to the way we call our Preferences dialog '[ci' 'skip].' We now check whether there are plugins as such '(and' not only whether some plugins have 'preferences).' commit 8cf34d4ea851d7a2bd6a8fa0ddc713420156382b Author: Alan Garny '' Date: Sun Oct 23 10:17:15 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 1863c0c2afdf3ae0875023d600521d40a4e0c056 Author: Alan Garny '' Date: Sun Oct 23 09:48:16 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3c0143220d2ae93739746fab1f1f05f0f209f543 Author: Alan Garny '' Date: Sat Oct 22 22:06:08 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' Removed the iCCP information from the PNG files '(see' 'http://stackoverflow.com/questions/22745076/libpng-warning-iccp-known-incorrect-srgb-profile),' thus preventing iCCP-related warning messages from Qt. commit 5b3c37c306400b5cd6e791d59d065c4fbededaa0 Merge: 9a596c7aa d3d885c51 Author: Alan Garny '' Date: Sat Oct 22 21:46:02 2016 +0200 Merge branch ''\''master'\''' into issue1141. commit 9a596c7aa37ccee4888afd2e5e6d7a9efc219e83 Author: Alan Garny '' Date: Sat Oct 22 21:35:55 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 268582b38fe5145c71e006717e3cd759c28dc459 Author: Alan Garny '' Date: Sat Oct 22 20:56:40 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 31762dfac9c873358a50f314d9ef2e42173d7ec9 Author: Alan Garny '' Date: Sat Oct 22 17:46:48 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6ad62174dca8f45511fed7ef0f507d4faf875115 Author: Alan Garny '' Date: Sat Oct 22 17:38:10 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit c6715e66f0d4d29c99422e6b7bca85f9c1c3acd8 Author: Alan Garny '' Date: Sat Oct 22 17:28:43 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d3d885c516ae8dd60e1c59629814baad23ad9042 Author: Alan Garny '' Date: Sat Oct 22 17:15:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e81daff7ae3a503464b34a2719ec53e7fc973ce4 Author: Alan Garny '' Date: Sat Oct 22 17:03:39 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit f228f6c1f1641c6993d42b849676a10ce438ca68 Author: Alan Garny '' Date: Sat Oct 22 16:42:51 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 3706d36ef1a87a0fab3f2d3c76b8adb63548af56 Author: Alan Garny '' Date: Sat Oct 22 16:25:45 2016 +0200 PMR Workspaces window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 24055321d2ac81e3dccaf3fbdc282bd3b8b0ba5c Author: Alan Garny '' Date: Sat Oct 22 13:45:27 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 79ec74d5815c2a27101fc77c4c064955532af047 Author: Alan Garny '' Date: Sat Oct 22 13:37:34 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2a8abf2ffe509aa5080c5a212cdd15dbbe309b1b Author: Alan Garny '' Date: Sat Oct 22 13:34:45 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e45c9bcc333ddc5f884e53d18f4f811f0c9cfc8c Author: Alan Garny '' Date: Sat Oct 22 13:27:54 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 1aae926f453147e506f59a4205a504d3ce7cc598 Author: Alan Garny '' Date: Sat Oct 22 11:34:18 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 6e3f0c3fd63e82d52575b7c62350982d42ee598a Author: Alan Garny '' Date: Sat Oct 22 10:48:03 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 2b4d6b848cdb8ff321953d694de9146cc4103b55 Author: Alan Garny '' Date: Sat Oct 22 09:43:33 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit d5945e9d5d6786be9c11b80398c359e016406a49 Author: Alan Garny '' Date: Fri Oct 21 15:49:32 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit e6fc9416ba1042d31dc3cd9453ba8c8e25189cd0 Author: Alan Garny '' Date: Fri Oct 21 15:42:27 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit 8c9d4e6b463e025ed17d6a2cd4a610d30e11d359 Author: Alan Garny '' Date: Fri Oct 21 15:41:20 2016 +0200 PMR Workspace window: some work on making PR '#1124' more in line with the rest of OpenCOR '(#1141).' commit fb151505be6c503e8067dd525de22e1772186c79 Merge: e38adf5be b3e78b8e0 Author: David Brooks '' Date: Fri Oct 21 13:48:49 2016 +0200 Merge branch ''\''openssl'\''' into pythonplugin commit b3e78b8e0a75fd9d456eec43863e43862b3d19e5 Merge: 6b0b38f3e 5f1f00a2e Author: David Brooks '' Date: Fri Oct 21 13:45:37 2016 +0200 Merge branch ''\''master'\''' into openssl commit 5f1f00a2e4cab46a8be3623fc56ad8fa8592dd05 Merge: 2842944b2 c8a495b0c Author: Alan Garny '' Date: Fri Oct 21 13:00:59 2016 +0200 Merge pull request '#1124' from dbrnz/pmrworkspace. commit e38adf5bed6fd113461e178069982ecbef40a9ba Merge: a1bfbdec4 2842944b2 Author: David Brooks '' Date: Fri Oct 21 12:54:39 2016 +0200 Merge branch ''\''master'\''' into pythonplugin commit c8a495b0cfcf7d56a5e211e966e979c40e229376 Author: David Brooks '' Date: Fri Oct 21 12:23:01 2016 +0200 Fix a typo in commit 128c191 '(#969).' commit 19df6d8dfe0eb0ff6c628d445e5e6114adc0b990 Author: David Brooks '' Date: Fri Oct 21 12:21:34 2016 +0200 Rename '`PmrRepository`' back to '`PmrWebService`' '(#969).' commit 128c1914890073bf446d722b18c4fd21e90c54fe Author: David Brooks '' Date: Fri Oct 21 11:54:37 2016 +0200 Tidy up git error reporting code '(#969).' commit ddc7d3585bbea7fc8ada61af6ead67354be6a6af Merge: b1b359db5 8412f7343 Author: David Brooks '' Date: Fri Oct 21 11:53:18 2016 +0200 Merge branch ''\''pmrworkspace'\''' of github.com:dbrnz/opencor into pmrworkspace commit b1b359db5d33bcfe81af3f82d7a6af4904690ec7 Merge: 7484100c4 2842944b2 Author: David Brooks '' Date: Fri Oct 21 11:47:42 2016 +0200 Merge branch ''\''master'\''' into pmrworkspace commit 2842944b25b180796596122d2a27571550b10eda Author: Alan Garny '' Date: Thu Oct 20 14:57:29 2016 +0200 Travis CI: upgraded to Stephan 'Binner'\''s' Qt 5.6.2 PPA. commit 29e19df88e5c560fb5aebdc4736ab97b40fffcac Author: Alan Garny '' Date: Thu Oct 20 13:11:50 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f011ff4a94b1d0665cc2bb201ec0232ee7d14c0 Author: Alan Garny '' Date: Thu Oct 20 10:40:46 2016 +0200 make sure that we, once again, generate snapshots '[ci' 'skip].' commit b7d27932273c59eefd09981a6fa157ca2e6c9e82 Merge: c569c9b39 0791b21e4 Author: Alan Garny '' Date: Thu Oct 20 10:29:59 2016 +0200 Issue1137 macOS: got rid of some macOS specific menu items '(closes' '#1137).' commit 0791b21e48410661b112e485649e2460f505947c Author: Alan Garny '' Date: Thu Oct 20 10:09:30 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' In case we want to build OpenCOR on earlier versions of macOS '(i.e.' before 10.12 / 'Sierra),' as is the case on Travis CI. commit cce1808fe8b206922e1680fdf17972a61434d973 Author: Alan Garny '' Date: Thu Oct 20 09:47:13 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' commit 645155c0841331fa07b31cf4cf45eac53df4d2c2 Author: Alan Garny '' Date: Thu Oct 20 09:44:12 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' commit 3737c3f0d8bae07dc08e67c2066a451d06c45d0b Author: Alan Garny '' Date: Thu Oct 20 09:36:25 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' commit 76b4c2b8aae29b29627c3d2439921bf19696c8da Author: Alan Garny '' Date: Thu Oct 20 09:30:55 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' commit 4c7e901d1c3272ac441924f8b7984afa69905c43 Author: Alan Garny '' Date: Thu Oct 20 09:22:22 2016 +0200 macOS: some work on getting rid of some macOS specific menu items '(#1137).' commit c569c9b39e2932f608d58355f600fefc5964ae79 Author: Alan Garny '' Date: Wed Oct 19 15:03:26 2016 +0200 Slight updates to our downloads and 'what'\''s' new pages '[ci' 'skip].' commit 626754a3939baf20dc9d858808b7c376bc4f20f4 Author: Alan Garny '' Date: Wed Oct 19 15:02:10 2016 +0200 Slight updates to our downloads and 'what'\''s' new pages '[ci' 'skip].' commit 61adb1b26106fa4b7b28bae8e176f19e9f41000f Merge: c104f6cab a442e893f Author: Alan Garny '' Date: Wed Oct 19 14:47:20 2016 +0200 Now have a preferences window so the user can specify his preferences for OpenCOR and its plugins '(closes' '#193).' commit a442e893f3f79115ebf2c18042dd09a8a0adc960 Merge: 99db527a0 c104f6cab Author: Alan Garny '' Date: Wed Oct 19 14:10:03 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 99db527a09c59f4604113adb78d21f048b519915 Author: Alan Garny '' Date: Wed Oct 19 13:47:08 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit c104f6cab254de1342d30e8588ac83f1ec51b103 Author: Alan Garny '' Date: Wed Oct 19 13:46:38 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 7f030fad72520b68f2b5536ddd07af23ccd4d99a Author: Alan Garny '' Date: Wed Oct 19 11:49:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit e457f85017f55ce11964380369052d6fc84380a7 Author: Alan Garny '' Date: Wed Oct 19 11:21:12 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 7fd8ececa0f5bfc908fe1bf3dfb4f1b7414d31a1 Merge: 0affc02bf 4143a1c27 Author: Alan Garny '' Date: Wed Oct 19 11:06:50 2016 +0200 Merge branch ''\''master'\''' into issue193 '[ci' 'skip].' commit 4143a1c275086d092b72d7b8b5a385122a8753bc Author: Alan Garny '' Date: Wed Oct 19 11:06:39 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0affc02bf5cd72dc47b5eb333c3c0d54af7147e8 Author: Alan Garny '' Date: Tue Oct 18 18:00:25 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 309931cc276062483bbc5e35df5c082de585b928 Author: Alan Garny '' Date: Tue Oct 18 17:19:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 711cbb0d9896883464cb3e624e4c11e3130ef980 Merge: aa590d0e4 078db5b91 Author: Alan Garny '' Date: Tue Oct 18 17:09:17 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 078db5b91a1d7ab67c2d26836c14bb853d461f3c Author: Alan Garny '' Date: Tue Oct 18 16:04:09 2016 +0200 Slight update to our developer documentation '[ci' 'skip].' commit 60cc2f2d935a78972b0f187cc1711038f180b2e8 Author: Alan Garny '' Date: Tue Oct 18 16:01:21 2016 +0200 General: improved the translation of Qt-related messages '(closes' '#1135).' commit e34f401d16e5f6fdb18994906ca914f9f0615267 Author: Alan Garny '' Date: Tue Oct 18 15:06:08 2016 +0200 Qt: removed the qgenericbearer plugin, which we 'don'\''t' need, on Windows/Linux/macOS and QtDBus on macOS, which we 'don'\''t' need either. commit aa590d0e43eb4ab3e67542b2f608666cfb1dee49 Author: Alan Garny '' Date: Tue Oct 18 11:39:14 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 6cc7775b8545b7222795c56028079f3d3c4244a1 Merge: c3adb157e 1db268de3 Author: Alan Garny '' Date: Tue Oct 18 10:57:17 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 1db268de3b4b14f3b73e19fc2aa50ea12c90f11d Author: Alan Garny '' Date: Tue Oct 18 10:31:24 2016 +0200 Web Browser window: some minor cleaning up. commit b954f6415cb714e442f9c91e1bc87a518c45b2b5 Author: Alan Garny '' Date: Tue Oct 18 10:26:01 2016 +0200 Web Browser window: some minor cleaning up. commit c3adb157ebc855e387e5a8593a2c1f656b22489d Merge: db3e4675f 179343e06 Author: Alan Garny '' Date: Mon Oct 17 19:42:24 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 179343e06f5f7178bf2ca0050c302f6ecb51fda1 Author: Alan Garny '' Date: Mon Oct 17 19:41:25 2016 +0200 Slight updates to our downloads and 'what'\''s' new pages '[ci' 'skip].' commit 6eb84369ed59546ddd665b4308aaf10cebc55d89 Author: Alan Garny '' Date: Mon Oct 17 19:32:38 2016 +0200 macOS: prevent an ApplePersistenceIgnoreState message from being shown '(closes' '#1134).' commit 8b8730eaf3cc1612d8eac3378e457672e166f6d5 Merge: 42ead2b91 896c6da35 Author: Alan Garny '' Date: Mon Oct 17 19:24:04 2016 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor '[ci' 'skip].' commit 42ead2b914bb0f41a699ada35bcfbed187f554bf Author: Alan Garny '' Date: Mon Oct 17 19:23:24 2016 +0200 Slight updates to our downloads page '[ci' 'skip].' This is following our work on issue '#1115.' commit 896c6da35e58bf305eae9b6de3a5781ff67a628d Merge: 23637c769 df535ad0b Author: Alan Garny '' Date: Mon Oct 17 19:14:12 2016 +0200 Add a Web browser like window '(closes' '#1115).' commit df535ad0b0096e93b1e6bb2d4ef59e9cba2b10e6 Author: Alan Garny '' Date: Mon Oct 17 17:27:09 2016 +0200 Some work on adding a Web browser like window '(#1115).' commit 3450f39438db622e84723eecb2b6bfd1a902cbb3 Author: Alan Garny '' Date: Mon Oct 17 17:22:28 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit 98747e016297adb57f7c0123c918fbfd55111a99 Author: Alan Garny '' Date: Mon Oct 17 17:20:27 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit d01c235f3e1a2e93a4950858d0162f437c03e2a6 Author: Alan Garny '' Date: Mon Oct 17 16:16:43 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit 37dcc448301467727f2b53eeb32feb6cf0ce153e Author: Alan Garny '' Date: Mon Oct 17 16:12:57 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit 6aacb7bcaab5bf387edf2d0011afc7667a97195a Author: Alan Garny '' Date: Mon Oct 17 16:11:54 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit f4c1a483650421575a9f4a453f2b0c0af399c8e3 Author: Alan Garny '' Date: Mon Oct 17 15:58:03 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit c41185ab9f0ead432e4b375dd61dc3caaac7740d Author: Alan Garny '' Date: Mon Oct 17 11:00:16 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit 4b8dafff65bd57500d8811d296bb4261e36ec18f Author: Alan Garny '' Date: Mon Oct 17 10:35:20 2016 +0200 Some work on adding a Web browser like window '(#1115)' '[ci' 'skip].' commit 3732feb4152f883ac399099f63b74a5f524ca28e Merge: c1e873293 23637c769 Author: Alan Garny '' Date: Sat Oct 15 22:25:49 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit db3e4675f065bf87dea0957c7fcbb4031c4dfc2b Merge: 70d8ecd22 23637c769 Author: Alan Garny '' Date: Sat Oct 15 22:24:35 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 23637c7690de7464890e78609eb22338c5a4b826 Author: Alan Garny '' Date: Sat Oct 15 21:32:56 2016 +0200 Version 0.5. commit 267dc9ea4355c454bcb5bf802a8caadfb02d99f9 Author: Alan Garny '' Date: Sat Oct 15 21:28:59 2016 +0200 PMR window: bypass certification check and make sure that our busy widget gets updated during cloning '[ci' 'skip].' Regarding the certificate check, we indeed came across a message '(on' OS X 10.8 through '10.11)' about the SSL certificate '(for' 'PMR)' being invalid. We $'\342\200\230trust\342\200\231' PMR, so we can bypass the certificate check. commit d5a08144064506b87c9d91ff73c9129a982a15d5 Author: Alan Garny '' Date: Sat Oct 15 20:17:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f80a65130f2ffc573294ea542f804efca917a11d Author: Alan Garny '' Date: Sat Oct 15 20:17:07 2016 +0200 Revert '"Version' '0.5."' This reverts commit 77b4fbc7f0b16ff4884ba2eed9e371d491c0a995. commit c1e8732930e76b11159c6742683d3c52b0a3f745 Merge: 0118a494f 77b4fbc7f Author: Alan Garny '' Date: Sat Oct 15 13:23:05 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 70d8ecd22bf0823434ee7dcb3f14dcc1ea7bb656 Merge: ed6a6775c 77b4fbc7f Author: Alan Garny '' Date: Sat Oct 15 13:22:24 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 77b4fbc7f0b16ff4884ba2eed9e371d491c0a995 Author: Alan Garny '' Date: Sat Oct 15 13:21:42 2016 +0200 Version 0.5. commit 9566269d02d0e0c8234406c6189061c9b2787862 Author: Alan Garny '' Date: Sat Oct 15 12:44:35 2016 +0200 PMR window: fixed a small problem when trying to directly clone a workspace '[ci' 'skip].' Indeed, the name of the directory where the cloning is to take place $'wasn\342\200\231t' passed, which means that it was failing. Note that this $'didn\342\200\231t' happen if we were first showing exposure files and then trying to clone a workspace since the cloning would have been done through a different route '(PmrWindowWindow::cloneWorkspace()' rather than 'PmrWebService::finished()' with WorkspaceInformation as a 'request).' commit 3e551ce1638790df844d6e576577265ad182f920 Author: Alan Garny '' Date: Sat Oct 15 12:37:32 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0118a494f056a4c70dca2c00974ce5ef6a3054b8 Merge: 3bfcde8ff e384416b0 Author: Alan Garny '' Date: Fri Oct 14 21:45:04 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit ed6a6775cba53f192758bb79cfa3b12d4f5d12f3 Merge: 50e78a5bb e384416b0 Author: Alan Garny '' Date: Fri Oct 14 21:44:12 2016 +0200 Merge branch ''\''master'\''' into issue193. commit e384416b069bfbd4106d3e2ba6920e4fc553eb63 Author: Alan Garny '' Date: Fri Oct 14 21:41:07 2016 +0200 Some minor cleaning up. commit 3bfcde8ff773b2a3c59b5044eab9c98632e399cd Merge: 50f67ec06 0dd7169e0 Author: Alan Garny '' Date: Fri Oct 14 17:49:05 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 50e78a5bbee96a23c0418b15852f3b2140379003 Merge: 05042726b 0dd7169e0 Author: Alan Garny '' Date: Fri Oct 14 17:47:28 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 0dd7169e0f50734ead1048a766c45be9e882e1bf Author: Alan Garny '' Date: Fri Oct 14 17:16:07 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2b2734897715f0af55eac3e84afcf41117f9b291 Author: Alan Garny '' Date: Fri Oct 14 15:22:14 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 6244e50b24e00e76eb03f4618a4e410dd244370c Author: Alan Garny '' Date: Fri Oct 14 13:55:25 2016 +0200 PropertyEditor widget: always create a value field even for a section item. Starting with commit 467830c52f3db2ef473d6f5a47e1c4969c1ab989, we thought it was a waste of memory to create a value field for a section item and, in some way, it is, but the fact is that it makes things more difficult when it comes to selecting a property or a section item. Indeed, when selecting a property, the property value gets correctly selected, but then if you select a section item, it will reset the position of horizontal scrollbar, if present '(even' if you try to preserve its position after selecting the section 'item).' commit 2359e24d55c6e12e45f9fe79e327f5d9272ef854 Author: Alan Garny '' Date: Fri Oct 14 13:46:17 2016 +0200 PropertyEditor widget: try to preserve the position of the horizontal scrollbar when selecting a property or section item '[ci' 'skip].' commit e21b2781b473f8c6c3eee11f3951c8500f67f878 Author: Alan Garny '' Date: Fri Oct 14 13:22:20 2016 +0200 PropertyEditor widget: improved the selection of a property, as well as made sure that a value field exists before returning its value as an integer, double, etc. '[ci' 'skip].' commit 797953163dde3d5a1b6146be4321d446bd3eb6d1 Author: Alan Garny '' Date: Fri Oct 14 13:00:42 2016 +0200 Greatly improved our 'adjustWidgetSize()' method. commit 6d978f2db8608a59d6fc9be812050fccd7d7438a Merge: fca7f1b77 5f8a4fe53 Author: Alan Garny '' Date: Thu Oct 13 23:02:23 2016 +0200 OpenSSL: now shipping OpenSSL libraries on macOS '(closes' '#1132).' commit 5f8a4fe538306a8f311dc942b8219b17d83cf066 Author: Alan Garny '' Date: Thu Oct 13 20:03:38 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries '(#1132).' commit e42974daf65ffa440704126b1afde7cb5d705cdc Author: Alan Garny '' Date: Thu Oct 13 19:24:46 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries '(#1132).' commit 2bc2711deade2f484e140370fb607b8caa05ec1e Author: Alan Garny '' Date: Thu Oct 13 18:54:09 2016 +0200 OpenSSL: some work on shipping OpenSSL libraries '(#1132).' commit fca7f1b7727a32609dfbd058fd37e24949e72f78 Author: Alan Garny '' Date: Thu Oct 13 17:15:30 2016 +0200 QScintilla: rebuilt its binaries. commit 227341aed695b83c4d2f473c802e45980d59d4c4 Author: Alan Garny '' Date: Thu Oct 13 17:05:41 2016 +0200 QScintilla: some work on rebuilding its binaries '[ci' 'skip].' commit 70f3944e36b8b95b3ad92106aeae2f511b3f0e90 Author: Alan Garny '' Date: Thu Oct 13 16:30:11 2016 +0200 QScintilla: fix Xcode 8 compilation problem. Another solution has been given on the QScintilla mailing list '(see' https://www.riverbankcomputing.com/pipermail/qscintilla/2016-October/001 '160.html),' referencing https://github.com/sqlitebrowser/sqlitebrowser/commit/969e263e5bf71e63df 8ee908cb4a2014b9a55c9b, but $'it\342\200\231s' not working for us. Indeed, although it does allow QScintilla to be compiled using Xcode 8, if you open more than one file using a QScintilla-based editor that should have the same lexer, then the lexer of the first file will be ''\''wrong'\''.' In our case, the line height of the first editor is slightly bigger than that of the two other editors, which is clearly wrong. Using this fix, everything is fine. commit b1a5849993d71d8309741ffb562954b22ce45f05 Author: Alan Garny '' Date: Thu Oct 13 15:46:28 2016 +0200 Reverting commit 8bca5dd78d64b1133b69d109434ee688413ee5c5 '[ci' 'skip].' Indeed, although it does allow QScintilla to be compiled using Xcode 8, if you open more than one file using the '`CellML' 'Text`' view, then the lexer of the file will be different from the others on Linux and macOS '(at' least, using our current lexer settings for the '`CellML' 'Text`' 'view).' Indeed, the height of a line is a slightly bigger for the first editor, which means that when you switch to another file, you can see that a slight $'\342\200\230shift' $'up\342\200\231' in the text. commit 1ab5194d2d8173cfcc48d993594b8c576610fd85 Author: Alan Garny '' Date: Thu Oct 13 15:41:09 2016 +0200 Some minor cleaning up. Related to issue '#1121.' commit 2c65c77bd4a005a0e7ea2efc21cccbc7a21d866d Author: Alan Garny '' Date: Thu Oct 13 14:49:02 2016 +0200 Slight improvement to our downloads page '[ci' 'skip].' commit 37dce4ef2a5179f59a64b2acad5d5fa29680e918 Merge: 1ea1c53e0 a286ab0ae Author: Alan Garny '' Date: Thu Oct 13 14:47:51 2016 +0200 Travis CI. commit a286ab0aedd46e48dca65dd0f5a00fc88a37aad9 Merge: bdbdb473b 1ea1c53e0 Author: Alan Garny '' Date: Thu Oct 13 13:05:29 2016 +0200 Merge branch ''\''master'\''' into travis-ci. commit 1ea1c53e0ab068d4cbb30b1831e3684c2aa219a1 Merge: 88a78404d 7a7169c67 Author: Alan Garny '' Date: Thu Oct 13 13:04:17 2016 +0200 Qt: upgraded to version 5.6.2 '(closes' '#1127).' This also closes '#1035' as a result. commit 7a7169c67c2361a55c538882b39299e9ddc6ca0a Author: Alan Garny '' Date: Thu Oct 13 11:56:23 2016 +0200 Qt: some work on upgrading to version 5.6.2 '(#1127).' commit bdbdb473bd5bf27cd241d5ad2101c39bc1fee1cb Author: Alan Garny '' Date: Thu Oct 13 11:19:19 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. Well, the issue is most related to the way the PPA version of Qt was built, so we still need to build $'QScintilla\342\200\246' commit facc8304b64463251429f60ae8f98e4edb822ea0 Author: Alan Garny '' Date: Thu Oct 13 10:42:15 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit ba2b228961f586e90b85b1130fd3f76fdb7cf04a Author: Alan Garny '' Date: Thu Oct 13 10:39:53 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit 6b9fd024d7ec5158cdf06b432b18068efe0d44f5 Author: Alan Garny '' Date: Thu Oct 13 10:04:52 2016 +0200 Qt: some work on upgrading to version 5.6.2 '(#1127).' commit a08bc695d579ee5146e5f557c87f9435f867ed80 Author: Alan Garny '' Date: Thu Oct 13 09:31:15 2016 +0200 Travis CI: checking whether we still need to build QScintilla or not. commit 54f03ad365859ec8403051c46db9ab2e0b96962c Merge: 0de1e15a4 88a78404d Author: Alan Garny '' Date: Thu Oct 13 09:28:37 2016 +0200 Merge branch ''\''master'\''' into issue1127. commit 88a78404dd7ebbff708a6893d2a0ec2c218fd6d0 Author: Alan Garny '' Date: Thu Oct 13 09:26:01 2016 +0200 Improved the deployment of some Qt libraries on Linux. commit 0de1e15a478c7832f401fa29726b93f6ce9a9fb9 Merge: f9122ec6d 97449c8fb Author: Alan Garny '' Date: Thu Oct 13 09:06:17 2016 +0200 Merge branch ''\''master'\''' into issue1127. commit 97449c8fbbc0e1acb6b20f48216ebca97c6fafe6 Merge: bf853322e dfecc0237 Author: Alan Garny '' Date: Wed Oct 12 20:57:04 2016 +0200 QtWebKit: upgraded to version 5.6.2 '(closes' '#1126).' commit 8412f7343c4b8ea4029253c1cea850f0e9afb1a8 Author: David Brooks '' Date: Wed Oct 12 20:43:12 2016 +0200 We $'can\342\200\231t' use '`git:`' prefix to access sub-modules '(#969).' commit dfecc0237dce94a7e33cc1dc9249a2fa58be7928 Author: Alan Garny '' Date: Wed Oct 12 20:30:29 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' commit 7c271c534a685a81d33a40520e7c964bfa1e07e0 Author: Alan Garny '' Date: Wed Oct 12 19:56:28 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' Done with the Windows side of things. commit f1ab088a4fc9bf285be88a3bed1cc8225a077237 Author: Alan Garny '' Date: Wed Oct 12 17:12:35 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' commit 388a9fed1b038112ee61d644f606268c7102575f Author: Alan Garny '' Date: Wed Oct 12 17:09:47 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' Done with the Linux side of things. commit f9122ec6d13b26fd1de476993c9ebd91295c691e Author: Alan Garny '' Date: Wed Oct 12 16:24:55 2016 +0200 Qt: some work on upgrading to version 5.6.2 '(#1127).' commit 96b455cd441798510c566e795936b3fa907a9410 Author: Alan Garny '' Date: Wed Oct 12 16:20:03 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' Done with the macOS side of things. commit e929a57db3daeeb580ded380d8d26128d94b0087 Merge: 9d91c4c2d bf853322e Author: Alan Garny '' Date: Wed Oct 12 16:04:51 2016 +0200 Merge branch ''\''master'\''' into issue1126. commit bf853322eabd825406118df4e5f5ae5b63a4018f Author: Alan Garny '' Date: Wed Oct 12 16:04:14 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d91c4c2d03087fd2de3f86a4b80a1724f9de88f Author: Alan Garny '' Date: Wed Oct 12 13:50:33 2016 +0200 QtWebKit: some work on upgrading to version 5.6.2 '(#1126).' commit 28a31e4e27f7cc8051a7d0b3a2eb15a6e476a9a9 Author: Alan Garny '' Date: Wed Oct 12 13:49:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e197236dbfec2077123e0c55bb9ad7070e603493 Author: Alan Garny '' Date: Wed Oct 12 13:25:45 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4994bdba3162c6d7439df87a951d108895fe61b7 Author: Alan Garny '' Date: Wed Oct 12 13:23:58 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 70e0cfa4ea12cd6731724c078f360f31871d3b6d Author: Alan Garny '' Date: Wed Oct 12 13:10:32 2016 +0200 Qt: some work on upgrading to version 5.6.2 '(#1127).' commit aa07cdb829d94aa53987b09178fd99c9838fea6c Author: Alan Garny '' Date: Wed Oct 12 13:02:47 2016 +0200 Qt: some work on upgrading to version 5.6.2 '(#1127).' commit dd539d80ec37b9cd87c019a98eb7fae1c6fdebb9 Merge: 4b85bfb8b 461a61860 Author: Alan Garny '' Date: Wed Oct 12 11:49:13 2016 +0200 libgit2: upgraded to version 0.24.2 '(closes' '#1125).' commit 461a618602f07af62bedfbbabb19a993b7a64275 Author: Alan Garny '' Date: Wed Oct 12 10:54:18 2016 +0200 libgit2: some work on upgrading to version 0.24.2 '(#1125).' Note: we are not generating new binaries just yet since we will anyway have to do that as part of issue '#1127.' commit 50f67ec06faebb2de3f52400496b7217267eff97 Merge: 4fae13821 4b85bfb8b Author: Alan Garny '' Date: Wed Oct 12 10:18:53 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 05042726b1ae4796232ad0775949d4c364491371 Merge: 8314a8bf9 4b85bfb8b Author: Alan Garny '' Date: Wed Oct 12 10:18:07 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 4b85bfb8b0d213776d617e64d74482e4e79a8af0 Author: Alan Garny '' Date: Mon Oct 10 16:38:27 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 99ff5a4440059868d7859167c9146c62f38d52b3 Author: Alan Garny '' Date: Mon Oct 10 16:30:48 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 299896aa7004d0adde6a1ffd1ed7375a5d5de79b Author: Alan Garny '' Date: Mon Oct 10 14:40:14 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 8bca5dd78d64b1133b69d109434ee688413ee5c5 Author: Alan Garny '' Date: Mon Oct 10 14:38:25 2016 +0200 QScintilla: slight fix so that it can be built using Xcode 8. QScintilla cannot be built using Xcode 8, but someone found a fix '(see' https://github.com/sqlitebrowser/sqlitebrowser/commit/969e263e5bf71e63df '8ee908cb4a2014b9a55c9b)' that we can use until QScintilla officially addresses that problem. commit 7484100c4bd5aedf4380bf49a3c8f600ba272db1 Author: David Brooks '' Date: Mon Oct 10 12:46:23 2016 +0200 Tidy up messages '(#969).' commit a51288fe1ede2f79ad56c877e7afc1d89a4e1b9e Author: David Brooks '' Date: Mon Oct 10 12:45:13 2016 +0200 Tidy up code '(#969).' commit 1f5fb6966836900735d25c330bea95ece307202d Author: David Brooks '' Date: Mon Oct 10 12:41:21 2016 +0200 Some work on handling merge conflicts '(#1058).' commit cd61bf8e41759ed408485466b5872a675ded7b49 Author: Alan Garny '' Date: Mon Oct 10 11:19:50 2016 +0200 Some minor cleaning up. commit e7275111a9d2424775d54b36a68330afa1d069e7 Merge: f54a8007e f8e8ffc3f Author: David Brooks '' Date: Fri Oct 7 14:02:33 2016 +0200 Merge branch ''\''master'\''' into pmrworkspace commit 4fae13821eafb46cfef4a648151e2ff0b059190f Merge: 24a3ee9e4 f8e8ffc3f Author: Alan Garny '' Date: Thu Oct 6 18:58:08 2016 +0200 Merge branch ''\''master'\''' into issue1115 '[ci' 'skip].' commit 8314a8bf9c167c0ecd1e3688dbecadaf088b24dd Merge: c32e60cad f8e8ffc3f Author: Alan Garny '' Date: Thu Oct 6 18:57:23 2016 +0200 Merge branch ''\''master'\''' into issue193 '[ci' 'skip].' commit f8e8ffc3f72a769afeb64ef3452758e18c41f1e8 Author: Alan Garny '' Date: Thu Oct 6 18:53:43 2016 +0200 Re-enabled BioSignalML-based plugins now that the macOS BioSignalML binary files have been moved to their ''\''new'\''' directory. commit c32e60cad610eac2d4e6efcb8fedacc321851e95 Author: Alan Garny '' Date: Thu Oct 6 18:51:51 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 24a3ee9e4527644d63e63b123a280ea3d322c358 Merge: 2eb08fe2b 781742f02 Author: Alan Garny '' Date: Thu Oct 6 16:34:41 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 3b1e273b78fc4ad472f643ded646e0e5784e1fdb Merge: 64993fe9d 781742f02 Author: Alan Garny '' Date: Thu Oct 6 16:33:57 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 781742f02761a52acfb3dea080a2919feb6b22fb Author: Alan Garny '' Date: Thu Oct 6 16:31:48 2016 +0200 Some minor cleaning up. commit fc501446c2e9e57af48f2b02b9d67bd62b940a5d Author: Alan Garny '' Date: Thu Oct 6 16:20:57 2016 +0200 Some minor cleaning up of 'arg()' constructs. commit 3e356283919ae200bff8e8fc2c31df00f970e7f6 Author: Alan Garny '' Date: Thu Oct 6 13:28:17 2016 +0200 Related to commit c9649a8 and therefore commit fdc94b9 '[ci' 'skip].' commit c9649a863e391ec741f9f6ceff41b21bd12f2a55 Author: Alan Garny '' Date: Thu Oct 6 11:54:07 2016 +0200 Fixed a problem that got introduced in commit fdc94b9 '[ci' 'skip].' Indeed, for version 0.4.1, we would end up with versionVersion being equal to $'\342\200\234' '0.%2.%2”!' commit 66fc03df50c5095188c98a60c9f73fd328a04852 Author: Alan Garny '' Date: Thu Oct 6 11:39:37 2016 +0200 CheckForUpdatesDialog: some refactoring. commit 03d87068be0cdc227656801f3c9f94e265e2db98 Author: Alan Garny '' Date: Thu Oct 6 11:38:32 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2eb08fe2bf22f56c2864e5a41ec3c03d327040fa Merge: 31daebadc d0440dbdc Author: Alan Garny '' Date: Thu Oct 6 10:59:17 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 64993fe9da517d0dcbb6f741043437ee2f15960a Merge: b9cea0cc5 d0440dbdc Author: Alan Garny '' Date: Thu Oct 6 10:58:43 2016 +0200 Merge branch ''\''master'\''' into issue193. commit d0440dbdc7e06a57d94ba086dde5b569759b0e62 Author: Alan Garny '' Date: Thu Oct 6 10:56:15 2016 +0200 CheckForUpdatesDialog: some refactoring. commit e34e9a81a93464e662a6b7a1a0a2293ca738dbe4 Author: Alan Garny '' Date: Thu Oct 6 10:25:08 2016 +0200 Plugins dialog: some refactoring. commit b9cea0cc54c4d8c7717984e5280b256cee033e0f Author: Alan Garny '' Date: Thu Oct 6 09:55:05 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 72f04ceca7f0c0bea76780ec936de0bdd14ada61 Author: Alan Garny '' Date: Thu Oct 6 09:51:57 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 97fa961822d8781545bf431e458e4c4ba18d581b Author: Alan Garny '' Date: Wed Oct 5 18:08:03 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 31daebadc4c1065d61e3acab7e9f3a7d81ee2d45 Merge: 532714a8c ced8a1481 Author: Alan Garny '' Date: Wed Oct 5 18:03:58 2016 +0200 Merge branch ''\''master'\''' into issue1115 '[ci' 'skip].' commit ced8a14814e13cc2bc1043eb5ec4f76ad95d56a7 Author: Alan Garny '' Date: Wed Oct 5 18:01:08 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 864edb1559b268a6425012182d8e63c1b41f652a Author: Alan Garny '' Date: Wed Oct 5 18:00:46 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 532714a8ced7d9b23b7a18fda13b0db460c4812b Merge: 67ce113c8 22d8834b4 Author: Alan Garny '' Date: Wed Oct 5 17:44:15 2016 +0200 Merge branch ''\''master'\''' into issue1115 '[ci' 'skip].' commit 899a4047544cb071b11deb1d48cb773a7ee8f853 Merge: b75d6a79b 22d8834b4 Author: Alan Garny '' Date: Wed Oct 5 17:42:40 2016 +0200 Merge branch ''\''master'\''' into issue193 '[ci' 'skip].' commit 22d8834b41f8bae4806d230538575c7ae27310f5 Author: Alan Garny '' Date: Wed Oct 5 17:41:51 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 67ce113c8cb7b3fc87b0d2c476b013e80a76777d Merge: f60bb9397 252f0eac6 Author: Alan Garny '' Date: Wed Oct 5 17:30:31 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit b75d6a79b4a3305def62fbc9e2b7501c783751c7 Merge: da0a4893f 252f0eac6 Author: Alan Garny '' Date: Wed Oct 5 17:29:29 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 252f0eac610e2d49c740448d0c15b851209bf923 Author: Alan Garny '' Date: Wed Oct 5 17:16:19 2016 +0200 General: use '"macOS"' '(#1121).' Oops, had forgotten to update some comments and a few other $'\342\200\230minor\342\200\231' things here and $'there\342\200\246' commit 5db0604e262b8900699ca6a3240cedaefa48bd3c Author: Alan Garny '' Date: Wed Oct 5 16:47:00 2016 +0200 Added 'adjustWidgetSize()' to adjust the size of a given widget, if needed '[ci' 'skip].' commit 9eace5d72d17380fa713c9f1b5ce676b9db97af0 Author: Alan Garny '' Date: Wed Oct 5 16:30:39 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 503b74254366d132ba18f8b54df5486c0a4b1c2d Author: Alan Garny '' Date: Wed Oct 5 16:20:46 2016 +0200 Removed the Preferences window '[ci' 'skip].' Note: it is currently being worked on '(see' issue '#193).' commit 2ded8d08d6123b2fcab934d55c36bec4329431f3 Author: Alan Garny '' Date: Wed Oct 5 16:18:50 2016 +0200 Oxygen library: upgraded to version 5.26.0 '[ci' 'skip].' commit da0a4893ff3c3d808b18e4253fe38ac9dbe1516c Author: Alan Garny '' Date: Wed Oct 5 15:34:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 8d51d6dc234162d3f064bb80acd68a5ef1cab545 Author: Alan Garny '' Date: Wed Oct 5 15:11:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 7ae8f07f8159a89469619e92763380105cad7b5c Author: Alan Garny '' Date: Wed Oct 5 15:09:50 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 5d39f6eb8c73dca8c6b5cbe7a268027e6ca0a4f9 Author: Alan Garny '' Date: Wed Oct 5 14:22:48 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit f60bb939752f69c11e3e784b49706aa4438412da Merge: 375e9f88c 8deff130c Author: Alan Garny '' Date: Wed Oct 5 09:01:02 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 4bd0e60b38942a3b7ebc4a8b72deb1e5da5b03b5 Merge: 1a72330dc 8deff130c Author: Alan Garny '' Date: Wed Oct 5 09:00:23 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 8deff130c13e24f0436d751bd670e4785770578c Author: Alan Garny '' Date: Wed Oct 5 08:56:14 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit a344c14510458462506e4d7f8871503754129953 Merge: 9a63d8284 2f89f4465 Author: Alan Garny '' Date: Tue Oct 4 20:36:44 2016 +0200 General: now use '"macOS"' '(closes' '#1121).' commit 2f89f4465ef3f6b62ecf12d7086d68f08ae52b33 Author: Alan Garny '' Date: Tue Oct 4 19:33:54 2016 +0200 Travis CI: re-enabling Linux and debug builds. commit 1914953c2bee00060bcf9261aeb03aed5d81b647 Author: Alan Garny '' Date: Tue Oct 4 19:10:31 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to export OPENSSL_ROOT_DIR. commit 69265595d9e20fce379ee400a4271882cba640a1 Author: Alan Garny '' Date: Tue Oct 4 18:44:10 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to set OPENSSL_ROOT_DIR. commit 5a783b24299931d02bb3e5a581c7f855ae011e4e Author: Alan Garny '' Date: Tue Oct 4 18:19:22 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to install OpenSSL and set OPENSSL_ROOT_DIR. commit ac8df1b5272a816978d86494a56fa7e9ed2b4ddb Author: Alan Garny '' Date: Tue Oct 4 17:45:49 2016 +0200 Travis CI: now that they use CMake 3.6.2 on macOS, we need to set OPENSSL_ROOT_DIR. commit 8319042976b01faaa7fc5e5ffdf729eeaf9e0bf0 Author: Alan Garny '' Date: Tue Oct 4 17:18:28 2016 +0200 Travis CI: apparently, we now need to install OpenSSL on macOS. commit e085d9ef22d81ce14a141eb9a7c52a2baea3bf64 Merge: 3bb455a1a 9a63d8284 Author: Alan Garny '' Date: Tue Oct 4 16:38:45 2016 +0200 Merge branch ''\''master'\''' into issue1121. commit 9a63d8284d77f18facce688471010873c92bf14f Author: Alan Garny '' Date: Tue Oct 4 16:38:12 2016 +0200 Travis CI: some minor cleaning up. Apparently, we $'don\342\200\231t' need to unlink and then $'\342\200\230install\342\200\231' CMake anymore on macOS. commit 3bb455a1a7ac657442147dfb00f78d3a060fe471 Author: Alan Garny '' Date: Tue Oct 4 16:13:57 2016 +0200 General: some work on using '"macOS"' '(#1121).' commit dec62c41cc3e86a8ba22c623603237e06cfcae2f Author: Alan Garny '' Date: Tue Oct 4 15:37:27 2016 +0200 General: some work on using '"macOS"' '(#1121).' commit 24fde3ee7ec19ef43c4890dcf8ce557357008b13 Author: Alan Garny '' Date: Tue Oct 4 15:15:00 2016 +0200 General: some work on using '"macOS"' '(#1121).' commit 23d69a5ba6711dc2373b84f70f449eb62cee2fc9 Author: Alan Garny '' Date: Tue Oct 4 10:58:32 2016 +0200 Renamed vprLogo.png to vpr.logo '[ci' 'skip].' commit a1bfbdec45ee920d19e2c19c1b658312f2ea7268 Merge: 003a362b7 ee7c04c11 Author: David Brooks '' Date: Mon Oct 3 22:57:17 2016 +0100 Merge branch ''\''master'\''' into pythonplugin commit 1a72330dc1f79a3309bdf612fea910e54f525fba Author: Alan Garny '' Date: Mon Oct 3 18:08:59 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 375e9f88c3cb40e63300e4ca573847c13d088121 Merge: 5ac13ede7 ee7c04c11 Author: Alan Garny '' Date: Mon Oct 3 14:57:29 2016 +0200 Merge branch ''\''master'\''' into issue1115 '[ci' 'skip].' commit ef9584dffb736280cb0e80422a98fa3ac76b1332 Merge: 962d2e32f ee7c04c11 Author: Alan Garny '' Date: Mon Oct 3 14:56:34 2016 +0200 Merge branch ''\''master'\''' into issue193 '[ci' 'skip].' commit ee7c04c11fb8c4bd556cf8b3865adbc9c32f9ca0 Author: Alan Garny '' Date: Mon Oct 3 14:55:59 2016 +0200 PMR window: use '"reload"' rather than '"refresh"' '[ci' 'skip].' commit 5ac13ede735fd0f6ab106e4eb3b46e6eb126ea9d Author: Alan Garny '' Date: Mon Oct 3 14:50:02 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit 5c777fad96ff9750d9e3483479f45eeb4d2063c1 Merge: 65447cb04 f4c308ba8 Author: Alan Garny '' Date: Mon Oct 3 14:30:31 2016 +0200 Merge branch ''\''master'\''' into issue1115 '[ci' 'skip].' commit 962d2e32fac4497e7214c6e1719a1e08b3c3b505 Merge: 22ec2cea6 f4c308ba8 Author: Alan Garny '' Date: Mon Oct 3 14:29:41 2016 +0200 Merge branch ''\''master'\''' into issue193 '[ci' 'skip].' commit f4c308ba809bd2878864a5df2e84021b1728e959 Author: Alan Garny '' Date: Mon Oct 3 14:28:58 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 65447cb04b9ba19c52a717666668447bd9c2babf Author: Alan Garny '' Date: Mon Oct 3 14:27:31 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit e4d836ef5a948c134041b21d892e68745d615a0e Author: Alan Garny '' Date: Mon Oct 3 14:25:22 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit 9a35ec50a6d813340f6a6c9906520f0e346dab0f Author: Alan Garny '' Date: Mon Oct 3 14:24:40 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit 8ecce0e11602018238b8063e89b426435adc7d52 Author: Alan Garny '' Date: Mon Oct 3 14:22:32 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit b2ba7d8ae17540ecd5ac0017be61893c03972599 Merge: 09bf799bd 6e762a085 Author: Alan Garny '' Date: Mon Oct 3 14:01:06 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 22ec2cea6a78bac013646b7c7fba9f19fbf1d4d4 Merge: 6951e8001 6e762a085 Author: Alan Garny '' Date: Mon Oct 3 14:00:04 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 6e762a085be35a9ecb1688d2dee8eb58b1de464f Author: Alan Garny '' Date: Mon Oct 3 13:53:47 2016 +0200 OpenSSL: upgraded to version 1.0.2j '(closes' '#1113).' commit 8365962c624af6505034cfadf839db9e6dab486b Author: Alan Garny '' Date: Sat Oct 1 21:14:40 2016 +0200 Travis CI: although ninja works fine, the overall time gain is negligible, so reverting. BEFORE: 2733.1 linux CONFIG=Release 18 min 36 sec 2733.2 linux CONFIG=Debug 18 min 46 sec 2733.3 osx CONFIG=Release 14 min 29 sec 2733.4 osx CONFIG=Debug 15 min 38 sec AFTER: 2738.1 linux CONFIG=Release 20 min 26 sec 2738.2 linux CONFIG=Debug 18 min 13 sec 2738.3 osx CONFIG=Release 11 min 51 sec 2738.4 osx CONFIG=Debug 12 min 38 sec commit dec7bf8eaf33db2c571c7f043dd46b57c61373d9 Author: Alan Garny '' Date: Sat Oct 1 20:38:01 2016 +0200 Travis CI: try to use ninja. commit 97442ef95def4efa56ed9c0bc14a984107b9bb9b Author: Alan Garny '' Date: Sat Oct 1 20:31:06 2016 +0200 Travis CI: try to use ninja. commit b1cba47dec0914866a5652324ec33933f66edd5b Author: Alan Garny '' Date: Sat Oct 1 20:21:42 2016 +0200 Travis CI: try to use ninja. commit 09bf799bd2061df2fabb09fe15c1c50d40f7dd0e Merge: a370b1968 516000951 Author: Alan Garny '' Date: Fri Sep 30 18:19:59 2016 +0200 Merge branch ''\''master'\''' into issue1115. commit 6951e8001ae1b58a42dda43725d3ec5659ad70f9 Merge: 9494f22c4 516000951 Author: Alan Garny '' Date: Fri Sep 30 18:19:18 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 51600095157d13c7075863214d6d0bd1d6b80f69 Author: Alan Garny '' Date: Fri Sep 30 18:17:24 2016 +0200 jQuery: upgraded to version 3.1.1 '(closes' '#1119).' commit f5d6c9dc1fc02cbc885bf2069c5ecaf8fbae41ac Merge: f17c941df 32066d60e Author: Alan Garny '' Date: Fri Sep 30 18:16:39 2016 +0200 SUNDIALS: upgraded to version 2.7.0 '(closes' '#1117).' commit 32066d60e470cccdbb51c61845629e84a05dc330 Author: Alan Garny '' Date: Fri Sep 30 17:51:52 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 '(#1117).' commit 5e78ee737c7c04443bc0d46ec4b43fbd0e5f3e9e Author: Alan Garny '' Date: Fri Sep 30 17:45:43 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 '(#1117).' commit 24f8e8d30427dd5cbf2c7763905812b0aeaa8bda Author: Alan Garny '' Date: Fri Sep 30 17:43:31 2016 +0200 SUNDIALS: some work on upgrading to version 2.7.0 '(#1117).' commit f17c941df9a13f0bfc4435f270a4b08ba55037d9 Author: Alan Garny '' Date: Fri Sep 30 17:22:13 2016 +0200 Oxygen library: upgraded to version 5.26.0 '[ci' 'skip].' commit a370b1968a7f23ac26080ec7d07fed3ae1e89172 Author: Alan Garny '' Date: Fri Sep 30 16:54:26 2016 +0200 Some work on adding support for ApiNATOMY '(#1115).' commit 9494f22c4e7e7ac56db5f6502b62c3b1d3de1039 Merge: 3dfad487c 91cec6a69 Author: Alan Garny '' Date: Fri Sep 30 14:52:51 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 91cec6a693622cfde47bab5598920d13a52de47c Author: Alan Garny '' Date: Fri Sep 30 14:43:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 121182b260caa844d355e2b9f95682c0c62f79c8 Merge: 73c390bc6 9589d2cbd Author: Alan Garny '' Date: Fri Sep 30 14:38:21 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes '(due' to some RPATH/RUNPATH 'values)' '(closes' '#1107).' commit 9589d2cbd839ea5355ab17cd7b225a3b83de39fd Author: Alan Garny '' Date: Fri Sep 30 12:44:18 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 713720de85dcb7684cf11e2fdcc48f8bf275e99c Author: Alan Garny '' Date: Fri Sep 30 12:42:06 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 16eeeea9f3b5ee11c637787f68a9cf88372ed0ed Author: Alan Garny '' Date: Fri Sep 30 12:41:53 2016 +0200 Some minor cleaning up. commit 97f738575e1957e8891af98a40800bb812a0a37b Author: Alan Garny '' Date: Fri Sep 30 12:31:25 2016 +0200 Some minor cleaning up. commit 649a75b877ceb1f7b359b54864c527502d6cad12 Author: Alan Garny '' Date: Fri Sep 30 09:41:30 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 2e997c2b4ad58220343248b44c22ee0c2337d358 Author: Alan Garny '' Date: Fri Sep 30 09:07:02 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit e10d435a04aeb88a1df3ba273b4d06f36faec148 Author: Alan Garny '' Date: Thu Sep 29 19:06:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 73c390bc6b0e074d5befee8ef86d29b619c70bb7 Author: Alan Garny '' Date: Thu Sep 29 10:55:03 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit d2244fa0511fc05b43213b242fc128bce23ee3b6 Author: Alan Garny '' Date: Tue Sep 27 17:31:42 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 46b828f7f219d17b975706d85adc95f895120656 Author: Alan Garny '' Date: Tue Sep 27 17:14:36 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3dfad487c6e8d41a07d394f96c16a184e32df8e2 Author: Alan Garny '' Date: Fri Sep 23 18:12:18 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit cc9dbe8492b8b1f9c0c9f3576abf389b47d34766 Author: Alan Garny '' Date: Fri Sep 23 18:10:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 2f2ba1ec2b0ea8c071b9be5fb578344373dff813 Author: Alan Garny '' Date: Fri Sep 23 16:52:56 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 72832483215ccba817c5c161261efd380c08471a Merge: 70bc3c7fb 4a95a1f3f Author: Alan Garny '' Date: Thu Sep 22 09:46:51 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 4a95a1f3f2b8527bc349321c1062376dada38fd0 Author: Alan Garny '' Date: Thu Sep 22 09:45:41 2016 +0200 Property editor widget: always cancel any editing when right-clicking on a property. Indeed, say that you are editing a property and then decide to right click '(on' its name or unit since right-clicking on its value will allow to copy, paste, 'etc.)' to add a graph panel, then the popup menu will correctly show, but the property will still be editable while it $'shouldn\342\200\231t' be. commit 70bc3c7fb17c07437efdbe4391f735ca853925ff Merge: 3bce5fcc8 40b506e1b Author: Alan Garny '' Date: Thu Sep 22 08:36:47 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 40b506e1bd18e30dfcf02924b0574fe297e2cb7f Author: Alan Garny '' Date: Thu Sep 22 08:35:35 2016 +0200 Property editor widget: fixed a small problem '(following' commit '467830c)' that prevented us from switching from a property to a section using the keyboard. commit ef472240f48b03e7d31c85b28edfd97ce701cd4f Author: Alan Garny '' Date: Thu Sep 22 08:31:26 2016 +0200 TreeViewWidget-based objects: use the default selection mode '(i.e.' 'QAbstractItemView::SingleSelection)' or explicitly specify the one we want to use '(see' FileBrowserWindowWidget and 'FileOrganiserWindowWidget).' commit d4c8d825f2e37c0199619242973efc79f24dd874 Author: Alan Garny '' Date: Wed Sep 21 23:07:31 2016 +0200 Property editor widget: fixed a small issue. commit 3bce5fcc801b6b0758311e21a4ff414474886b0b Author: Alan Garny '' Date: Wed Sep 21 18:57:21 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit f255457f18e840c26498c53ec04ed6e6e4b92294 Merge: 8d5a2a0e5 995a327be Author: Alan Garny '' Date: Wed Sep 21 18:43:56 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 995a327be59126a3825f6abbd4919fcad35e09a5 Author: Alan Garny '' Date: Wed Sep 21 18:42:13 2016 +0200 Plugins dialog: prevent plugin categories from collapsing. commit 8d5a2a0e51516e4a4e01a94c1546ab7852e76824 Author: Alan Garny '' Date: Wed Sep 21 18:17:18 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 5de776c74da90f515a3cab29b1c7fd3880811895 Author: Alan Garny '' Date: Wed Sep 21 17:51:45 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit d31a55aee0077d40777d54bc7f2c5a0d27bd836a Author: Alan Garny '' Date: Wed Sep 21 17:04:41 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 9938518e07877e69a09bf1b45ab8fbd66bc5dd2f Author: Alan Garny '' Date: Wed Sep 21 16:32:11 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 6c165115326ce72afc32addf89b78587ff0fc21d Author: Alan Garny '' Date: Wed Sep 21 15:27:51 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 00ce0bb7969a4b0d8100b0e7622bc1835f43505b Author: Alan Garny '' Date: Tue Sep 20 22:50:12 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 4156d09f331ea757dfb091b745b63d91429e0207 Merge: 8dd774be1 5aaeaabed Author: Alan Garny '' Date: Tue Sep 20 22:44:46 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 5aaeaabed880a3e03e2f9011a3c29f733d5e0a12 Author: Alan Garny '' Date: Tue Sep 20 22:43:46 2016 +0200 Plugins dialog: slight improvements to the GUI '[ci' 'skip].' commit 8dd774be10f19324e15f2f2b18d8936614dfbb9a Author: Alan Garny '' Date: Tue Sep 20 21:42:06 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 48ac4444d8c7600762a0307c15553f9227b3ba07 Author: Alan Garny '' Date: Tue Sep 20 21:30:06 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit ba9a2dceed53b9e8443f25edc0685079aeed5d09 Author: Alan Garny '' Date: Tue Sep 20 20:39:35 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit db090189a7d73942c87e53fb178b4c18c9133006 Merge: 3d207d053 5399fc1b7 Author: Alan Garny '' Date: Tue Sep 20 18:53:31 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 5399fc1b7e5c3ae97c72bfde89a90972543e7a1d Author: Alan Garny '' Date: Tue Sep 20 18:51:21 2016 +0200 Some minor cleaning up of indentations and of formatting of some messages. commit 3d207d053687f627f4ce4bed93d1972839fd08eb Author: Alan Garny '' Date: Tue Sep 20 16:12:30 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit d4c49672e5ee4408d6d45c4f4042a18124b13368 Merge: dd23ed71b 77de1cd3e Author: Alan Garny '' Date: Tue Sep 20 15:51:41 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 77de1cd3e3b249e76704cc840141816677e8ccc1 Author: Alan Garny '' Date: Tue Sep 20 15:50:31 2016 +0200 Plugins window: make sure that we really select the first category no matter the locale. commit 8a96de8753d602a8e8e8fd589f762caa7666079d Author: Alan Garny '' Date: Tue Sep 20 15:16:34 2016 +0200 Plugins: make the description of a plugin category available within the '(Core)' CLI utilities. commit f5de95d2ed4209b2ad74bb7c252756be4d01c0fb Author: Alan Garny '' Date: Tue Sep 20 15:15:19 2016 +0200 Fixed a translation '[ci' 'skip].' commit dd23ed71bd2a0b9cb9c3413f68a0bf6e9c6c9e93 Author: Alan Garny '' Date: Tue Sep 20 14:40:47 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit cbccba1464b9e989c3633c6be0540205d6644e6c Author: Alan Garny '' Date: Tue Sep 20 14:32:17 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 1b7d4e1696fda71e99ed8dc86a2b6d817f00e0df Merge: a4fc8a0d1 8edd831a8 Author: Alan Garny '' Date: Tue Sep 20 14:10:56 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 8edd831a88e640f954a3ef7980937b150cac88a6 Author: Alan Garny '' Date: Tue Sep 20 14:10:44 2016 +0200 Plugins dialog: some minor cleaning up '[ci' 'skip].' commit a4fc8a0d1c8e22e7cd691fc12c1062082e34ae37 Author: Alan Garny '' Date: Tue Sep 20 13:58:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 227df7aec8e35cefa67bcb41554e40874c5f0db4 Merge: bad2a4f58 3db7766eb Author: Alan Garny '' Date: Tue Sep 20 13:35:28 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 3db7766eb43c7ca2da38760ad86472fff1afc373 Author: Alan Garny '' Date: Tue Sep 20 13:35:09 2016 +0200 Plugins dialog: some minor cleaning up '[ci' 'skip].' commit bad2a4f58dc322e0378d7c312c211f78b28a6a39 Author: Alan Garny '' Date: Tue Sep 20 11:15:41 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 61975338f0e5246b1637035fe90069453987ded9 Author: Alan Garny '' Date: Tue Sep 20 11:10:19 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit df179e3e0037bb610ddb355f3ae01dae28a39fa7 Author: Alan Garny '' Date: Tue Sep 20 08:26:17 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 380e51772786ce672a406dfd90c9a767e4d544e1 Merge: 2aef872e6 29921f4fc Author: Alan Garny '' Date: Mon Sep 19 21:41:37 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 2aef872e696ba765e85f35abbea28fd3fbf52b3a Author: Alan Garny '' Date: Mon Sep 19 21:34:42 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 29921f4fc5738dd7e5a11e171d01b8ec5c8aefa3 Author: Alan Garny '' Date: Mon Sep 19 21:26:30 2016 +0200 Removed the data store interface files from OpenCOR itself. We $'don\342\200\231t' need them, $'so\342\200\246' commit 046cfbeb5d1c64157a1f5b540f51d696fc279cea Author: Alan Garny '' Date: Mon Sep 19 21:14:25 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 491eb04806c51b4b515f52afe579f7c68747bca5 Author: Alan Garny '' Date: Mon Sep 19 15:16:09 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 6d859bc476e0c0db2b6eea5c739212a7b8f441dc Merge: 45c9c4842 7ddb4fca7 Author: Alan Garny '' Date: Mon Sep 19 15:13:36 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 7ddb4fca762fc1f113bbfddb947cc42c93e5d416 Author: Alan Garny '' Date: Mon Sep 19 15:11:49 2016 +0200 Fixed a small problem with commit 0818e2a7992ccf4484260563aa23b20227a05599. Indeed, with 'PluginManager::plugins()' and especially 'PluginManager::loadedPlugins()' being sorted, we were now loading the '`File' 'Browser`' and '`File' 'Organiser`' windows before the '`Physiome' Model 'Repository`' window despite the PMR window explicitly asking to be loaded before the two other windows. commit d4cb5a41984f9eab8dba4e5fd61e45ea42d95c72 Author: Alan Garny '' Date: Mon Sep 19 14:35:02 2016 +0200 make sure that our Core general tests work fine on a system that $'doesn\342\200\231t' use '`.`' as a decimal separator. commit d515ee35a9ac956916af1bb800d737c9ab067d5c Author: Alan Garny '' Date: Mon Sep 19 12:06:58 2016 +0200 CMake: check in '[OpenCOR]/cmake/common.cmake' '(rather' than in '[libgit2]/CMakeLists.txt)' that OpenSSL is available on Linux / OS X. commit 003a362b73eb9051a88b7bebf778dadf8dacb335 Author: David Brooks '' Date: Mon Sep 19 09:41:12 2016 +0100 General: some work on forcing plugins to reference one of the categories we support '(#1111).' commit 4e6dec277c889b2b55f4a300e944a5a0e97b4eeb Merge: 00fbf6cfb 1c78e47ce Author: David Brooks '' Date: Mon Sep 19 09:18:22 2016 +0100 Merge branch ''\''master'\''' into pythonplugin commit f54a8007e42f57277a7b0ddf88d4bacfad431920 Merge: 564479959 1c78e47ce Author: David Brooks '' Date: Mon Sep 19 09:16:47 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 45c9c48422ab761f9a1003069bb68bc1d69d6cdc Author: Alan Garny '' Date: Sun Sep 18 09:24:01 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 9b55e284a23843ad465cdd73659a181c1daf42e9 Author: Alan Garny '' Date: Sat Sep 17 23:15:22 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit b4936b2f2f946af6627ec202bf5061657157568b Merge: f2ff81485 1c78e47ce Author: Alan Garny '' Date: Sat Sep 17 22:50:04 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 1c78e47ce47bfe5129cb8ce8e75e0c1d225e8d20 Author: Alan Garny '' Date: Sat Sep 17 22:48:28 2016 +0200 Property Editor widget: some minor cleaning up '[ci' 'skip].' commit f2ff81485479bf8f2d60d6e72057eb52bfb64421 Author: Alan Garny '' Date: Sat Sep 17 21:24:37 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 0a890283c33c37aa8520a803f4948d9f97563a0a Author: Alan Garny '' Date: Sat Sep 17 21:15:09 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 494338c2f78426cf07720ff5d3230a8ae6319035 Author: Alan Garny '' Date: Sat Sep 17 21:12:56 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 444f6ec174b3bfd3f309048951ed08208c4cc052 Author: Alan Garny '' Date: Sat Sep 17 21:10:37 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit c0259fe3840c265122a9c5a64e4e7352f67d75ca Merge: e93b182c1 abd54279b Author: Alan Garny '' Date: Sat Sep 17 20:34:35 2016 +0200 Merge branch ''\''master'\''' into issue193. commit abd54279b0daa843d84a1165a8200ba825549ed4 Author: Alan Garny '' Date: Sat Sep 17 20:33:02 2016 +0200 Property Editor widget: some minor cleaning up. commit 467830c52f3db2ef473d6f5a47e1c4969c1ab989 Author: Alan Garny '' Date: Sat Sep 17 20:28:29 2016 +0200 Property Editor widget: some minor cleaning up '[ci' 'skip].' $'Don\342\200\231t' create a value item when the property is of section type. commit 08d3c92338e9a2009cf66d32dfeac51fbdc2d852 Author: Alan Garny '' Date: Sat Sep 17 19:51:07 2016 +0200 Property Editor widget: some minor cleaning up '[ci' 'skip].' commit a7f66a9ee80d9d4eec0b849c7f1d3385b64cf1b6 Author: Alan Garny '' Date: Sat Sep 17 18:54:55 2016 +0200 Property Editor widget: a property should be editable by default... $'\342\200\246' but not its name and unit. commit e93b182c196c8e30046c87fc9b1a280feb766656 Author: Alan Garny '' Date: Sat Sep 17 10:09:05 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 87efa5e16f1de10b0a4f65b29d3d205b8ee2d1eb Merge: 149f465ad 3d37bd2c8 Author: Alan Garny '' Date: Sat Sep 17 10:02:39 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 3d37bd2c8acfd9f2927f7c8ed3753f7c527eff9c Author: Alan Garny '' Date: Sat Sep 17 10:01:41 2016 +0200 Replaced '(the' now 'obsolete)' QStyleOptionViewItemV4 with QStyleOptionViewItem. commit 149f465adb75d010ae513f43d4d95b9d3a3f3bf2 Author: Alan Garny '' Date: Sat Sep 17 09:36:27 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit 363cfada5182332279730f9a8f32969e08c38a92 Merge: 9d858e3cb d5b95be96 Author: Alan Garny '' Date: Sat Sep 17 09:32:58 2016 +0200 Merge branch ''\''master'\''' into issue193. commit d5b95be969cf163f90c27f8ffb311d8d13891756 Author: Alan Garny '' Date: Sat Sep 17 09:32:34 2016 +0200 Plugins window: some minor cleaning up '[ci' 'skip].' commit 9d858e3cbb26775d7358541d572b3e80c73156d8 Merge: 23aa3376c 2830adb04 Author: Alan Garny '' Date: Sat Sep 17 09:20:23 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 2830adb0422f44c0798a23496c7ddc3cd73bee25 Author: Alan Garny '' Date: Sat Sep 17 09:19:21 2016 +0200 Plugins window: some minor cleaning up '[ci' 'skip].' commit 23aa3376cf15cad5ccb12f94d0598f452de1cfcf Merge: 460e188bd e896f7cd1 Author: Alan Garny '' Date: Fri Sep 16 18:17:50 2016 +0200 Merge branch ''\''master'\''' into issue193. commit e896f7cd16cc5ac27650cc251e2f655c5a408f5e Author: Alan Garny '' Date: Fri Sep 16 18:11:36 2016 +0200 Plugins: added an invalid category for invalid plugins. Converted a couple of files from ANSI to UTF-8. commit 460e188bd715b3fcc7b4f05d495a2addef09ffe0 Merge: 3fda59f64 a731fc83f Author: Alan Garny '' Date: Fri Sep 16 18:05:56 2016 +0200 Merge branch ''\''master'\''' into issue193. commit a731fc83f0c4765d4ae96a843fb95633ed38194a Author: Alan Garny '' Date: Fri Sep 16 18:05:02 2016 +0200 Plugins: added an invalid category for invalid plugins. commit e3ecd65f52a78217f11357e161122f69667a8640 Author: Alan Garny '' Date: Fri Sep 16 17:46:20 2016 +0200 Plugins: added an invalid category for invalid plugins '[ci' 'skip].' commit 317f30e4eae304f7d952a8ee369101f1d63a45a7 Author: Alan Garny '' Date: Fri Sep 16 16:57:40 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3fda59f64fe5b02cb8985bcf6afc087686a6d4f5 Merge: bfb77e0cb 607caf7e7 Author: Alan Garny '' Date: Fri Sep 16 16:47:02 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 607caf7e7348ebb30299ad5effbaf2b7c7ec17a6 Author: Alan Garny '' Date: Fri Sep 16 16:46:03 2016 +0200 Property Editor widget: a property should be editable by default. commit bfb77e0cbeac5ce67471697116836bc952b2cc59 Merge: f8af5278b 5575ed6e1 Author: Alan Garny '' Date: Fri Sep 16 15:55:38 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 5575ed6e1a6fc97fcc344196b5d94d9e5c904592 Author: Alan Garny '' Date: Fri Sep 16 15:51:38 2016 +0200 Address a compilation issue on Windows and Linux. commit f8af5278b1dac10ac8e5ff3bd4bfc788c8378fe2 Author: Alan Garny '' Date: Fri Sep 16 15:27:19 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit f91e82b20c7818e207f5679f050b920959767282 Merge: dbae23740 b1016aa0b Author: Alan Garny '' Date: Fri Sep 16 15:09:55 2016 +0200 Merge branch ''\''master'\''' into issue193. commit b1016aa0ba647fc60a7a92e75acd9340d837b65d Author: Alan Garny '' Date: Fri Sep 16 15:04:36 2016 +0200 Plugins window: only create a plugin category when necessary '[ci' 'skip].' commit 52343e492688e60c09e310b47bca29ce1925540e Author: Alan Garny '' Date: Fri Sep 16 14:50:13 2016 +0200 Added a core CLI function to retrieve name of a plugin category as a string '[ci' 'skip].' commit 2c124c5a0395445d37590cac34de546aaa7882a4 Author: Alan Garny '' Date: Fri Sep 16 14:48:49 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b93b6dbfa2b85b5f6846a6fd603051a1e5542368 Author: Alan Garny '' Date: Fri Sep 16 13:05:13 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3863edd42df41aafb8a0a61a79ada7bb61af0e66 Author: Alan Garny '' Date: Fri Sep 16 12:09:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' We $'don\342\200\231t' actually need to call '`setAutoTristate(true)`' on a standard item that will effectively be set to partially checked. commit 0b8632f8f70cc7c3f7048f8bdbc289d62a77edd6 Author: Alan Garny '' Date: Fri Sep 16 11:22:46 2016 +0200 Plugins window: some minor cleaning up '(following' issue '#1111)' '[ci' 'skip].' commit 1cb9b1e1154b0c6d21d37357516fd5876fba70f0 Author: Alan Garny '' Date: Fri Sep 16 11:20:20 2016 +0200 Plugins window: some minor cleaning up '(following' issue '#1111)' '[ci' 'skip].' commit dbae2374069b180151e60444f30ebc67a2e521fd Merge: 12fbeb4bf a6fb7e66c Author: Alan Garny '' Date: Fri Sep 16 00:14:20 2016 +0200 Merge branch ''\''master'\''' into issue193. commit a6fb7e66cd8100eba14b9fa513cb02fdf7108698 Merge: f2751d212 4dc4c4fda Author: Alan Garny '' Date: Fri Sep 16 00:12:45 2016 +0200 General: force plugins to reference one of the categories we support '(closes' '#1111).' commit 4dc4c4fdadf41ba9e9ad48f50cb2a6f10299b3c2 Author: Alan Garny '' Date: Thu Sep 15 23:25:24 2016 +0200 General: some work on forcing plugins to reference one of the categories we support '(#1111).' commit 6812066b96a91194ca0b2140cf5fd2a05bd69068 Author: Alan Garny '' Date: Thu Sep 15 21:09:04 2016 +0200 General: some work on forcing plugins to reference one of the categories we support '(#1111).' commit 31158ef095690ad1b0c854a04152ce3e7642bac0 Author: Alan Garny '' Date: Thu Sep 15 20:32:30 2016 +0200 General: some work on forcing plugins to reference one of the categories we support '(#1111).' commit 35c628cfc428667be005d756c8d2e08817e01a5a Author: Alan Garny '' Date: Thu Sep 15 20:19:13 2016 +0200 General: some work on forcing plugins to reference one of the categories we support '(#1111).' commit f2751d21283f6374bb536f1d9f376c0f3b29624e Author: Alan Garny '' Date: Thu Sep 15 18:26:32 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 12fbeb4bf8f978167a32ddf6f8fe65a95a45d839 Merge: ff250ddb7 8b5486575 Author: Alan Garny '' Date: Thu Sep 15 17:19:16 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 8b5486575f910a21fc99528d2dfa28588f70ed55 Author: Alan Garny '' Date: Thu Sep 15 17:19:03 2016 +0200 Plugins window: some minor cleaning up '[ci' 'skip].' commit ff250ddb73aee07f7ade36f7bb0627dbb145456d Merge: 9a1f05189 88abf8872 Author: Alan Garny '' Date: Thu Sep 15 17:06:30 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 88abf887274d31f4192ee9f60565adeaf996d274 Author: Alan Garny '' Date: Thu Sep 15 17:06:19 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9a1f051898f61ccf8ed1a45558378870549503fc Merge: 1541a74cb 0818e2a79 Author: Alan Garny '' Date: Thu Sep 15 16:28:08 2016 +0200 Merge branch ''\''master'\''' into issue193. commit 0818e2a7992ccf4484260563aa23b20227a05599 Author: Alan Garny '' Date: Thu Sep 15 16:27:35 2016 +0200 Some minor refactoring of our lists of plugins. commit 1541a74cb272ae06264ed471bd5164b1da26f4a6 Author: Alan Garny '' Date: Thu Sep 15 15:31:33 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit d892bdbf467488b5b88329bbf8b6f450b36c592c Author: Alan Garny '' Date: Thu Sep 15 15:21:00 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit aad51d8bf75c5bddab37cc1e8d59b30df65c4bbe Merge: 27f70fe73 f93e311a5 Author: Alan Garny '' Date: Thu Sep 15 15:15:19 2016 +0200 Merge branch ''\''master'\''' into issue193. commit f93e311a533e9913cae26ea83528646597eee0b5 Author: Alan Garny '' Date: Thu Sep 15 15:14:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 27f70fe737abcd48d5111667f07360957b4979c5 Author: Alan Garny '' Date: Thu Sep 15 15:02:01 2016 +0200 Some work on having a preferences window so the user can specify his preferences for OpenCOR and its plugins '(#193).' commit d408a81dcd09eca77428e176029b6a98c2cc3244 Author: Alan Garny '' Date: Wed Sep 14 23:31:05 2016 +0200 Revert '"Updated' our prerequisites page following the release of Xcode 8.0 '[ci' 'skip]."' This reverts commit 7876ace01bb1a0743e24f4d8539df1b9062f7fc0. commit 7876ace01bb1a0743e24f4d8539df1b9062f7fc0 Author: Alan Garny '' Date: Wed Sep 14 18:03:45 2016 +0200 Updated our prerequisites page following the release of Xcode 8.0 '[ci' 'skip].' commit e55cd09b3ca138475a0eccd48e896ce4a2b9fdec Author: Alan Garny '' Date: Tue Sep 13 11:48:39 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d082cc7bbc3c6c8c2a7ab0916893332649a79e6 Author: Alan Garny '' Date: Mon Sep 12 16:27:12 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class '[ci' 'skip].' commit 1c1d09c5b27b4b3615d1d3cf8e3de4fbce78a677 Author: Alan Garny '' Date: Mon Sep 12 16:26:01 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class '[ci' 'skip].' commit d8103bb296afbb785a8e31acb186016adb821329 Author: Alan Garny '' Date: Mon Sep 12 15:16:54 2016 +0200 Compiler: some minor cleaning up of our CompilerEngine class. commit bc4ca134d7c02a63ac9863ff9aace5b4e34ea659 Author: Alan Garny '' Date: Mon Sep 12 13:45:16 2016 +0200 Downloads page: moved our latest snapshot '(i.e.' '0.5RC)' in first position and make it clear that it is our 0.5RC '[ci' 'skip].' commit 8b6818b01c62bf372d91e20bb70a7a236607238c Author: Alan Garny '' Date: Sun Sep 11 00:29:17 2016 +0200 CMake: make use of 'CMAKE_PARSE_ARGUMENTS()' rather than determining the arguments ourselves. commit afee8456f05810f10642ed3f3999d6382a08b742 Author: Alan Garny '' Date: Sun Sep 11 00:09:12 2016 +0200 CMake: make use of 'CMAKE_PARSE_ARGUMENTS()' rather than determining the arguments ourselves. commit 439e9dbfcfb77f35ea8659cb5eace4030a6524b8 Author: Alan Garny '' Date: Sat Sep 10 23:51:53 2016 +0200 CMake: make use of 'CMAKE_PARSE_ARGUMENTS()' rather than determining the arguments ourselves. commit f512622f6258ea74f54243dc199418ae89ca58ca Author: Alan Garny '' Date: Sat Sep 10 23:45:17 2016 +0200 CMake: make use of 'CMAKE_PARSE_ARGUMENTS()' rather than determining the arguments ourselves. commit 3f5acc6a914178c09cbfc28906ccf1a5989a434a Author: Alan Garny '' Date: Sat Sep 10 23:39:57 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0fe9c83385f0608094eb0b61870f377230d2cd24 Author: Alan Garny '' Date: Sat Sep 10 00:13:35 2016 +0200 OS X / macOS logo: updated to that of Finder '[ci' 'skip].' commit 40716443013043baf65703d34b1899ceebc4b437 Author: Alan Garny '' Date: Fri Sep 9 20:42:05 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b9cf1f93cd84cc5bead40fb118952ceb556b9d16 Author: Alan Garny '' Date: Fri Sep 9 17:54:33 2016 +0200 Updated the 'what'\''s' new page as a result of OpenCOR working on the forthcoming macOS 10.12 '(Sierra)' '[ci' 'skip].' commit 00fbf6cfb289aec6acbca1324f87fec9dedd81d1 Author: David Brooks '' Date: Thu Sep 8 22:00:01 2016 +0100 Correctly initialise PYTHONHOME '(#1085).' This allows the shell to find Python libraries bundled with OpenCOR. commit 4bdabf4d1b6865adccbe6b10c55abd40d6dfbbe5 Author: David Brooks '' Date: Thu Sep 8 21:51:55 2016 +0100 Work on the Python build system '(#1085).' commit bcf4ad086495253ba872635c9de3cee3177caaa6 Merge: 7dbceb642 ab580bda1 Author: Alan Garny '' Date: Thu Sep 8 17:26:02 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes '(due' to some RPATH/RUNPATH 'values)' '(closes' '#1107).' commit ab580bda15afbf85af2cc514d51ddb05588642df Author: Alan Garny '' Date: Thu Sep 8 16:42:30 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 4c84d8df06bf7337b4ecaf6d056b2db0d4566307 Merge: c40b02821 7dbceb642 Author: Alan Garny '' Date: Thu Sep 8 15:27:11 2016 +0200 Merge branch ''\''master'\''' into issue1107. commit 7dbceb6428621f23dfc40a6944139a6baa097510 Author: Alan Garny '' Date: Thu Sep 8 15:26:56 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit c40b0282187991615adcb5f699f8d497c8129923 Author: Alan Garny '' Date: Thu Sep 8 15:22:45 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 8ba6bc721afae9d460a4d51761b2fa732d424904 Author: Alan Garny '' Date: Thu Sep 8 14:26:53 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 39aa25110b801b41be7e74e0f409897b7d584524 Merge: fc24626f9 8a0e398a2 Author: Alan Garny '' Date: Thu Sep 8 14:20:29 2016 +0200 Merge branch ''\''master'\''' into issue1107. commit 8a0e398a2e140a2bad619a539292c30f0dbc6789 Author: Alan Garny '' Date: Thu Sep 8 14:19:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit fc24626f9344367a3ba1ac6af1a062ff2744ea02 Author: Alan Garny '' Date: Thu Sep 8 13:46:24 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 7fd2b10f532f9aae935bddf037296433bf3359a4 Author: David Brooks '' Date: Thu Sep 8 12:27:49 2016 +0100 Clean up Python build and use new packaging macros '(#1085).' commit 125ba7c333fc441c40731854200f02a160e7446a Author: Alan Garny '' Date: Thu Sep 8 11:53:27 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 1f1254d0765c30bf2d452ea5fef38fb3fd5a0d32 Author: Alan Garny '' Date: Thu Sep 8 10:37:40 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 1714f7ade349335ef7b71e3c310e8ab7f6c113c9 Author: Alan Garny '' Date: Thu Sep 8 09:39:18 2016 +0200 Some minor cleaning up '[ci' 'skip].' Related to issue '#1107.' We $'don\342\200\231t' need to set the '`RPATH`' value for a pre-built plugin, hence we $'don\342\200\231t' the '`DIRECT`' mode for '`SET_RPATH()`' and $'don\342\200\231t' need to check in '`cmake/setrpath.sh`' whether the '`RPATH`' value is different. commit cececc82b585e103052b61c7ea28f0d40a733522 Author: Alan Garny '' Date: Thu Sep 8 09:33:18 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 94fe8b8c0738d56c17a2e9418c48b935e1ea74dd Author: Alan Garny '' Date: Wed Sep 7 23:49:07 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes '(due' to some RPATH/RUNPATH 'values)' '(closes' '#1107).' Argh, to set the RPATH of a library that is already correct changes its SHA-1 value, which means that every time we build OpenCOR on Linux, we need to redownload all of our prebuilt plugins. So, now, we check the RPATH value and compare it against the one we want to use. commit e595a38677ce1b47639b8c539f75b9a5e9f858df Merge: e0fabe120 2a60aa055 Author: Alan Garny '' Date: Wed Sep 7 22:27:54 2016 +0200 General: fixed a problem with some plugins potentially not loading on some Linux boxes '(due' to some RPATH/RUNPATH 'values)' '(closes' '#1107).' commit 2a60aa05571bf0f9c2c6997bbc51145e86646224 Author: Alan Garny '' Date: Wed Sep 7 21:24:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 7f2f8186f2f4c4856a7d39ccb0908a83f5d07f8e Merge: 330fba13a f900b9842 Author: David Brooks '' Date: Wed Sep 7 18:35:49 2016 +0100 Merge branch ''\''pythonplugin'\''' into pythondevel commit f900b984254894f2301b5d39e1ea3fbd1083ade3 Merge: a51420f92 6b0b38f3e Author: David Brooks '' Date: Wed Sep 7 18:34:23 2016 +0100 Merge branch ''\''openssl'\''' into pythonplugin commit a51420f927c426ad89b39ae276b7d2639a494522 Merge: d6f97ea49 753b217e5 Author: David Brooks '' Date: Wed Sep 7 18:32:01 2016 +0100 Merge branch ''\''packaging'\''' into pythonplugin commit 4b7c57820cd2b2cf1c70757784166366050afda1 Author: Alan Garny '' Date: Wed Sep 7 18:49:56 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 90d4fb276ec0df40ad6af194a9a264833aacc560 Author: Alan Garny '' Date: Wed Sep 7 18:49:15 2016 +0200 Merge branch ''\''master'\''' into issue1107. commit e05395b24fb5f5c70e7c70d58905abb248957e93 Merge: 4c2252cb9 e0fabe120 Author: Alan Garny '' Date: Wed Sep 7 18:45:40 2016 +0200 Merge branch ''\''master'\''' into issue1107. commit e0fabe1200f50842ee1d15d8978a2f6e30ba746c Author: Alan Garny '' Date: Wed Sep 7 18:43:25 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4c2252cb9cb6909cc04dc2af979c2e379484ef04 Author: Alan Garny '' Date: Wed Sep 7 18:34:56 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 135c91c47bfac38eca47862963d2fde9df2a65e7 Author: Alan Garny '' Date: Wed Sep 7 18:03:53 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 6b0b38f3ee0c2622f598bf70188d983010656f33 Merge: a3a0a1c70 f0fd62e7f Author: David Brooks '' Date: Wed Sep 7 16:53:55 2016 +0100 Merge branch ''\''packaging'\''' into openssl commit f0fd62e7feaa39d126b6f29267046f6431d930c3 Author: David Brooks '' Date: Wed Sep 7 16:53:25 2016 +0100 gitignore directories containing pre-built packages '(#1106).' commit a3a0a1c70eb170c52dac76030ee9ba264fc9b849 Author: David Brooks '' Date: Wed Sep 7 16:49:12 2016 +0100 Windows OpenSSL 1.0.2h needs patching to build -- see https://github.com/openssl/openssl/issues/1545 '(#1101).' commit 026f4da6311007c4f592e7fc6b875c27813bcc62 Author: David Brooks '' Date: Wed Sep 7 16:11:58 2016 +0100 Get OpenSSL building under Windows '(#1101).' commit e6f3ebad3073a737e804590832e7c1ba05dac78d Author: Alan Garny '' Date: Wed Sep 7 16:03:46 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit cc9a67e027effa47ddd8612537a095b9635e4f01 Author: Alan Garny '' Date: Wed Sep 7 15:59:50 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 3087034454eaf7c4963a397aa1d260d4a5c5b3f1 Author: Alan Garny '' Date: Wed Sep 7 15:32:23 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit f11b54067341a03d40cf0c379b8741e78c26e5db Merge: 712c8a979 073bb1d0c Author: Alan Garny '' Date: Wed Sep 7 15:22:52 2016 +0200 Merge branch ''\''master'\''' into issue1107. commit 073bb1d0c8f839cff4dea8b30c07005d98fa68f5 Author: Alan Garny '' Date: Wed Sep 7 15:22:31 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 712c8a9799b43089fb771596f437ccb8a5b45824 Author: Alan Garny '' Date: Wed Sep 7 15:21:19 2016 +0200 General: some work on fixing a problem with some plugins potentially not loading on some Linux boxes '(#1107).' commit 681d85005f3f4514c4f33d5d36c5f8fef6ceb076 Merge: 36d5e5b74 753b217e5 Author: David Brooks '' Date: Wed Sep 7 12:24:36 2016 +0100 Merge branch ''\''packaging'\''' into openssl commit 753b217e5c1f35d78f737a62af1b279ec1239a34 Author: David Brooks '' Date: Wed Sep 7 12:22:06 2016 +0100 'Don'\''t' duplicate '`CHECKED_FILES`' list when generating '`RETRIEVE_PACKAGE_FILE`' code '(#1106).' commit 8d9fd7899b43fae289ad7ca73d90a453e20bda0d Author: David Brooks '' Date: Wed Sep 7 12:18:22 2016 +0100 Get example of packaging an external library working under Windows '(#1106).' commit 36d5e5b74fa522df626399b926c30521900feb49 Author: David Brooks '' Date: Wed Sep 7 09:50:34 2016 +0100 Use the '`1_0_2h`' release of OpenSSL '(#1088' and '#1101).' commit d8fa9ac9f18789a5d1d721bbf20618b526e27ece Author: Alan Garny '' Date: Wed Sep 7 10:39:07 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit cabdd7ccbeae45fbc105da0a36bde8f28c0bd591 Author: Alan Garny '' Date: Wed Sep 7 09:38:21 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 59f76da088ecd7e432658645ac8eb93b107f2fea Author: David Brooks '' Date: Tue Sep 6 23:05:20 2016 +0100 Work on OpenSSL plugin '(#1101).' Use new packaging system for OpenSSL 'libraries;' cleanup paths in OS/X 'libraries;' use OpenSSL 1.0.2 because libgit2 'doesn'\''t' like 1.1.0. commit 79ebee61436f12a5ccdd4c906d14b8e3b6042243 Merge: cb7f33010 8ae2192b1 Author: David Brooks '' Date: Tue Sep 6 22:27:45 2016 +0100 Merge branch ''\''packaging'\''' into openssl commit cb7f330103bd3d8022bee94a15af6e4be643d6cc Merge: d451211cf f8414eb3c Author: David Brooks '' Date: Tue Sep 6 22:27:17 2016 +0100 Merge branch ''\''master'\''' into openssl commit 8ae2192b1aa7c82125356cd9461f9c8ebe23709f Author: David Brooks '' Date: Tue Sep 6 22:26:30 2016 +0100 Use CHECK_FILES macro when retrieving binary files '(#1106).' commit 39fb5ccf02321c6a55e961260687c3c1c317706f Author: David Brooks '' Date: Tue Sep 6 22:13:32 2016 +0100 Provide a sample plugin to demonstrate and test the use of packaged pre-built libraries '(#1106).' commit 3b3d09bedc3233ced7b7ca044e0f2d1fc9af3697 Author: David Brooks '' Date: Tue Sep 6 21:46:28 2016 +0100 Provide a mechanism to package and download pre-built libraries '(#1106).' commit f8414eb3c923813e2e7956050ddb1ded0b5a432a Author: Alan Garny '' Date: Mon Sep 5 22:16:05 2016 +0200 New snapshot. commit d9bafa0ec70aa8777b8dcbdc2fc3782079e5b1f1 Author: Alan Garny '' Date: Mon Sep 5 22:14:04 2016 +0200 Removed support for Mac OS X 10.7 '(closes' '#1105).' commit fa8dbbabbf078c895456559ecf1e76d100b953ba Author: Alan Garny '' Date: Mon Sep 5 21:59:05 2016 +0200 Revert '"New' 'snapshot."' '[ci' 'skip].' This reverts commit 8a75a79e69cc5fdd2fb07fd7ab564a1b6a1946e7. commit 8a75a79e69cc5fdd2fb07fd7ab564a1b6a1946e7 Author: Alan Garny '' Date: Mon Sep 5 17:23:22 2016 +0200 New snapshot. commit b56daa286faa4b748553fd91dd2cd326faea571f Author: Alan Garny '' Date: Mon Sep 5 17:22:48 2016 +0200 CellML Text view: oops, forgot to update one of our CLI 'tests!' commit ab6fe4b4cfb16f3ca8ee649633083cbae9fb328b Author: Alan Garny '' Date: Mon Sep 5 17:16:52 2016 +0200 Revert '"New' 'snapshot."' '[ci' 'skip].' This reverts commit e872152eea11535b59b663af1179c0c4931a0dbf. commit e872152eea11535b59b663af1179c0c4931a0dbf Author: Alan Garny '' Date: Mon Sep 5 16:50:28 2016 +0200 New snapshot. commit 5b10a831316bff55d2b507afe1278ae72fe6a55e Author: Alan Garny '' Date: Mon Sep 5 16:48:25 2016 +0200 Slight updates to our user documentation '[ci' 'skip].' commit 4dffa2733638af037cb29f2b9d647ffe65871311 Author: Alan Garny '' Date: Mon Sep 5 16:15:48 2016 +0200 Slight updates to our user documentation '[ci' 'skip].' commit c5f64c327ebd1c67bcb035652a3d3423a8f7d501 Author: Alan Garny '' Date: Mon Sep 5 15:39:17 2016 +0200 Slight updates to our user documentation '[ci' 'skip].' commit 273b62eccc807b245da6d407a32fd94b15ccf480 Author: Alan Garny '' Date: Mon Sep 5 15:38:52 2016 +0200 Slight updates to our user documentation '[ci' 'skip].' commit d243c745a9479d59828f4f7a783138e5d51e147c Author: Alan Garny '' Date: Mon Sep 5 15:38:39 2016 +0200 Slight updates to our user documentation '[ci' 'skip].' commit 52f0b72e1ee0dd022eb28acf6cf9bee838229a87 Author: Alan Garny '' Date: Mon Sep 5 15:02:41 2016 +0200 Revert '"New' 'snapshot."' '[ci' 'skip].' This reverts commit 665f711d21e12a995443c3738c6847dab4b7e065. commit 665f711d21e12a995443c3738c6847dab4b7e065 Author: Alan Garny '' Date: Mon Sep 5 14:20:07 2016 +0200 New snapshot. commit a600a717eb0f2d12906cd9ce4a1c2e1ca086ff83 Merge: 4a899c65f d3ee01ba4 Author: Alan Garny '' Date: Mon Sep 5 13:49:18 2016 +0200 Updated the documentation in preparation for the 0.5 release '(closes' '#1047).' commit d3ee01ba4633dffa71d75ad25329c1707d5b47e8 Author: Alan Garny '' Date: Mon Sep 5 13:14:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit b8f9b82d931fe4b41b2b6b707890340039ca531d Author: Alan Garny '' Date: Mon Sep 5 13:04:54 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 65001c28dca83b53c1d728956d07bdd8def539dc Author: Alan Garny '' Date: Sun Sep 4 20:42:22 2016 +0200 Single Cell view + SED-ML: make a SED-ML file the default way to export a simulation to SED-ML. The user can still $'\342\200\230manually\342\200\231' decide to export to a SED-ML file or a COMBINE archive. commit 330fba13a7cfda77ad5b0845acadc6fa3824d5b7 Merge: 3f828d920 4a899c65f Author: David Brooks '' Date: Sun Sep 4 19:39:29 2016 +0100 Merge branch ''\''master'\''' into pythondevel commit d6f97ea49082402c885c47d0ea8321cb5ee1d184 Merge: feecc002f 4a899c65f Author: David Brooks '' Date: Sun Sep 4 19:39:08 2016 +0100 Merge branch ''\''master'\''' into pythonplugin commit d451211cf43c385bd58bbb9e54ad5c937d7b3aaf Merge: 6fc689de0 4a899c65f Author: David Brooks '' Date: Sun Sep 4 19:38:42 2016 +0100 Merge remote-tracking branch ''\''upstream/master'\''' into openssl commit e02acddba8960e414d57c69b7cea8f8849fc79ab Author: Alan Garny '' Date: Sun Sep 4 20:34:52 2016 +0200 Single Cell view + SED-ML: updated the tool tip of an action. commit 46e7dcbcc3df7712349d5eb65354983fafbce3b7 Author: Alan Garny '' Date: Sun Sep 4 20:29:30 2016 +0200 Single Cell view + SED-ML: make it possible to open the referenced CellML file using the default CellML view. Also list the Single Cell view as a possible view. commit 1f99cb8efbf07699dd4e180f90c0e5af90533a3c Author: Alan Garny '' Date: Sun Sep 4 20:26:57 2016 +0200 Some minor cleaning up. commit 3f828d92039fd7d383fb185f3a26c1e0c901af1b Merge: 6c364babd 6fc689de0 Author: David Brooks '' Date: Sun Sep 4 19:22:50 2016 +0100 Merge branch ''\''openssl'\''' into pythondevel commit feecc002f3a3c9667ca15ece2dd72bda10d7c075 Merge: 235e22353 6fc689de0 Author: David Brooks '' Date: Sun Sep 4 19:22:32 2016 +0100 Merge branch ''\''openssl'\''' into pythonplugin commit 6fc689de0c07dd8e973a79cf221e862b350b2944 Author: David Brooks '' Date: Sun Sep 4 19:20:34 2016 +0100 Specify branch of OpenSSL sub-module. commit 6c364babde797a31ce726ca91ee3a98e796c1918 Merge: ece968493 95cc1d11c Author: David Brooks '' Date: Sun Sep 4 19:19:39 2016 +0100 Merge branch ''\''openssl'\''' into pythondevel commit bf3aaabc0a36c669b6ac4c73ef693c2229096c3b Author: Alan Garny '' Date: Sun Sep 4 18:51:55 2016 +0200 CellML support: replaced the default CellML logo with something that is easier to use. Indeed, the one we were using is twice as high than wide, which is not ideal since all our other icons are as high as wide. commit 2ed6b32266502366644d60021760798f81067075 Author: Alan Garny '' Date: Sun Sep 4 12:16:10 2016 +0200 Revert '"CellML' support: enlarged the CellML 'logo."' This reverts commit 9190e2bb15e891f8650e996d18478902eba0c1ca. commit 9190e2bb15e891f8650e996d18478902eba0c1ca Author: Alan Garny '' Date: Sun Sep 4 12:10:52 2016 +0200 CellML support: enlarged the CellML logo. commit c4971d3b6387e7a92e2323e274cceb2c5e67ab39 Author: Alan Garny '' Date: Sun Sep 4 12:10:31 2016 +0200 Single Cell view: fixed a small problem with the development mode action not always being properly enabled/disabled. commit 6f014b07cb812bb2772fc02b7b4f8cb870a68886 Author: Alan Garny '' Date: Sun Sep 4 09:42:27 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit f339d2a4c32e9b32037e983a852db7488ed43820 Author: Alan Garny '' Date: Sun Sep 4 09:16:38 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit f7be7b5d210ab3c0218eb59f4ef7a158f5ec44ce Author: Alan Garny '' Date: Sun Sep 4 08:43:32 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 6de64e7f34d015e35d45ba77c2c6fae3b7e7e576 Author: Alan Garny '' Date: Sat Sep 3 23:48:28 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 2c6cec46e629f9dbffc001e5aac5a2f075c93aa6 Author: Alan Garny '' Date: Sat Sep 3 23:09:27 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit b7153c8dddf8d48f5c52c3d07fc86f2466579bf4 Author: Alan Garny '' Date: Sat Sep 3 22:31:30 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 8fd96bec1a1baed1c1bbe45312188222f149efa2 Author: Alan Garny '' Date: Sat Sep 3 21:24:16 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit e264e393aa3684350348946c3b9740c6a0359f1c Author: Alan Garny '' Date: Sat Sep 3 18:28:59 2016 +0200 PMR window: fixed a small problem with the wrong tool tip being sometimes used for showing/hiding exposure files. commit 625812ea34168dfa9fd7eedfc41ac4bdaf222fee Author: Alan Garny '' Date: Sat Sep 3 18:10:51 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 20c6708aa58ba6302a4db9d7673f3e243977aff2 Author: Alan Garny '' Date: Sat Sep 3 18:08:36 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 5c350a607794bea5335bd838bd6af9eca7e29fb4 Author: Alan Garny '' Date: Sat Sep 3 17:38:55 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 6df77baa91d53c4f4519acde2e36a263c9f02d99 Author: Alan Garny '' Date: Sat Sep 3 17:12:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit b6f3ad2d13466de3387adb7cdd961c22549ca2a0 Merge: c9f6ea302 4a899c65f Author: Alan Garny '' Date: Sat Sep 3 17:03:33 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 4a899c65faf5c05616a6e1774609594b3422ca38 Author: Alan Garny '' Date: Sat Sep 3 17:02:51 2016 +0200 Tree view widget: improved our handling of context menus '[ci' 'skip].' Indeed, while working on issue '#1047,' I noticed that we $'couldn\342\200\231t' delete a group of items in the File Organiser window anymore. In fact, we $'haven\342\200\231t' been able to do this since OpenCOR '0.2!' commit c9f6ea3029f8abee1ed5728c03c1d4f8fb0c69dc Merge: e6dfdfd13 8d73184ed Author: Alan Garny '' Date: Sat Sep 3 16:57:32 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 8d73184ed1d95b11239dcf87abdc159318e7715e Author: Alan Garny '' Date: Sat Sep 3 16:56:49 2016 +0200 Tree view widget: improved our handling of context menus '[ci' 'skip].' Indeed, while working on issue '#1047,' I noticed that we $'couldn\342\200\231t' delete a group of items in the File Organiser window anymore. In fact, we $'haven\342\200\231t' been able to do this since OpenCOR '0.2!' commit 74f8f04322aa97e98b3c4b6762363b53f1f85612 Author: Alan Garny '' Date: Sat Sep 3 16:27:53 2016 +0200 File Organiser window: fixed a small problem with the tooltip shown for a folder '[ci' 'skip].' commit 6da844fa30d1bcf0b1ed12959bfc84df65e19b9b Author: Alan Garny '' Date: Sat Sep 3 16:11:27 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e6dfdfd138cf8022776413eb802650bb3cf30e67 Author: Alan Garny '' Date: Sat Sep 3 15:19:10 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit b92a291b5bfdc1859de03d3f3bbb3d67bbb05310 Author: Alan Garny '' Date: Sat Sep 3 14:57:49 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 3cfaee55cef0361fc251538c728b0836eecabde5 Author: Alan Garny '' Date: Sat Sep 3 12:03:37 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 8eac549960e3ceeea9c78e56e1507c9020c809b7 Author: Alan Garny '' Date: Sat Sep 3 12:02:25 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit ec0ea851130e6fd957e9d3d1efa3e8d9235d8580 Merge: 7ff4493fb 27ebd23ad Author: Alan Garny '' Date: Sat Sep 3 11:59:38 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 27ebd23ad8a3b3c850848961a6314a2bd97ed721 Author: Alan Garny '' Date: Sat Sep 3 11:58:59 2016 +0200 Single Cell view: some additional work on fixing the style of the toolbar being sometimes wrong '(#1082).' Oops, I was asking for a busy widget to be shown when retrieving remote CellML 1.1 dependencies, but we $'shouldn\342\200\231t' do that when running the CellML tools from the CLI. commit 0caf304e9574c0e89dc92b4fdf5e9f1b853c80e7 Author: Alan Garny '' Date: Sat Sep 3 11:35:08 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 7ff4493fb7baec6b188b9857c46554846066a48b Author: Alan Garny '' Date: Sat Sep 3 11:10:53 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit f0c5670693cf48ba223514d789e7caddddfcd5c6 Author: Alan Garny '' Date: Sat Sep 3 11:08:20 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 7dbdaf324e5027d5582b9dd1562033048687c902 Author: Alan Garny '' Date: Sat Sep 3 10:51:01 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit b19cb2c83b243d417399d1f2ff5bc3893f749d92 Merge: 82256c20f ba6e42bdc Author: Alan Garny '' Date: Sat Sep 3 10:12:26 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit ba6e42bdcc5fcc69c035a79fc9f210a762831923 Author: Alan Garny '' Date: Sat Sep 3 10:11:41 2016 +0200 Slight update to our downloads page '[ci' 'skip].' Related to issue '#1102.' commit eee73a8956857c169dd6e3db8dbe44e28a803518 Merge: 09e08170e 2a55c001b Author: Alan Garny '' Date: Sat Sep 3 10:10:25 2016 +0200 SUNDIALS-related plugins: now use their new URL '(closes' '#1102).' commit 2a55c001b1ff31ac1991222fba5b80074bb1e6eb Author: Alan Garny '' Date: Sat Sep 3 09:46:34 2016 +0200 SUNDIALS-related plugins: some work on using their new URL '(#1102).' commit 75b321d14f4c1d29eea911c017d10aeec5af4b3a Author: Alan Garny '' Date: Sat Sep 3 09:36:50 2016 +0200 SUNDIALS-related plugins: some work on using their new URL '(#1102).' commit 82256c20fc03f868371293cc85a4cf1b5bfd8afb Author: Alan Garny '' Date: Sat Sep 3 09:22:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 0b13bbb487abffc79db6da04642a35f90a04cedb Author: Alan Garny '' Date: Sat Sep 3 09:02:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 0fe36d5cbf57f4d60d9722df088e4cda6fb36660 Merge: d722437e2 09e08170e Author: Alan Garny '' Date: Fri Sep 2 23:28:03 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 09e08170e792475bebcce9f8850c5f111c1b38b8 Merge: 147e0d748 cabd43628 Author: Alan Garny '' Date: Fri Sep 2 23:27:06 2016 +0200 General: removed the reference to the version of Qt and of the plugins we use '(closes' '#1098).' commit 95cc1d11caeab6d5412f0dcfa7cde0f8397c4fb1 Author: David Brooks '' Date: Fri Sep 2 21:23:09 2016 +0100 Work on OpenSSL plugin '(#1101).' commit ece968493d04d44d0b36f8649ff6bef154bbdc6c Merge: 2ba0c00e6 147e0d748 Author: David Brooks '' Date: Fri Sep 2 20:31:02 2016 +0100 Merge branch ''\''master'\''' into pythondevel commit 235e223535a0f92a0db4014e78c5c71315dc8e00 Merge: b414a8755 147e0d748 Author: David Brooks '' Date: Fri Sep 2 20:30:42 2016 +0100 Merge branch ''\''master'\''' into pythonplugin commit d722437e29897ff8b6aff01d303d55b792ada95c Author: Alan Garny '' Date: Fri Sep 2 21:23:40 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit cabd43628261f48069d3ea4025be7fbef27c5476 Author: Alan Garny '' Date: Fri Sep 2 21:17:30 2016 +0200 Plugins: some work on removing the reference to the version we are using '(issue' '#1098).' commit a2ddf261239a07cf29dab2c599817bdfafdfff85 Author: Alan Garny '' Date: Fri Sep 2 21:16:57 2016 +0200 Plugins: some work on removing the reference to the version we are using '(issue' '#1098).' commit e5241ee7c012c22e416248b3f4e23c9735623a68 Author: Alan Garny '' Date: Fri Sep 2 21:08:12 2016 +0200 Plugins: some work on removing the reference to the version we are using '(issue' '#1098).' commit 8eb26f907a0c578497d30a0aebf4e05b0df8a597 Author: Alan Garny '' Date: Fri Sep 2 21:04:38 2016 +0200 Plugins: some work on removing the reference to the version we are using '(issue' '#1098).' commit 4ad1b6c00dc877032e7694ca63df5b170761ba80 Author: Alan Garny '' Date: Fri Sep 2 13:44:41 2016 +0200 Plugins: some work on removing the reference to the version we are using '(issue' '#1098).' commit 46c548dcee428cd908af5e50327fba329d86c76f Author: Alan Garny '' Date: Fri Sep 2 11:37:25 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit f093cfef93b7d4d9fde2ebfec67a87ce082a1bae Merge: e139a1f33 147e0d748 Author: Alan Garny '' Date: Fri Sep 2 10:33:12 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 147e0d74806146dd6771b2ff3a47e4336276e051 Author: Alan Garny '' Date: Fri Sep 2 10:32:36 2016 +0200 File Browser window: slight improvement for OS X '[ci' 'skip].' commit e139a1f33c4be53938c8c92eee8267a20926da71 Merge: c37906192 e2f12d9cc Author: Alan Garny '' Date: Fri Sep 2 08:57:19 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit e2f12d9cce2e8c9eb58c575b490895f4e325c578 Author: Alan Garny '' Date: Fri Sep 2 08:56:52 2016 +0200 Some minor cleaning up. commit c379061926efc08d97db8d7da719c6dcdcf1353d Merge: a24de96f7 1c4d5dd3e Author: Alan Garny '' Date: Thu Sep 1 23:37:31 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 1c4d5dd3e571aaf031bfe1c8466538a9a5fb3110 Author: Alan Garny '' Date: Thu Sep 1 23:36:49 2016 +0200 Slight update to our downloads page '(#1096' and '#107)' '[ci' 'skip].' commit cf74017cc7557edc717e3633cfedb79da2545b1b Author: Alan Garny '' Date: Thu Sep 1 23:30:30 2016 +0200 CellML editing views: fixed a small problem with the MathML viewer not always getting updated when no rendering options are selected '(closes' '#1097).' commit b7c3861fe91b913f8d45106ed73054e896e7fda6 Author: Alan Garny '' Date: Thu Sep 1 23:24:06 2016 +0200 CellML editing views: the MathML viewer now properly updates once again '(closes' '#1096).' Slight improvement to our solution. commit a24de96f7503fdd6b0bb930e74d94116f907174d Merge: dfd79ab0d 6605cfebb Author: Alan Garny '' Date: Thu Sep 1 22:08:57 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 6605cfebb0864dd629bd837de1f4e54ffebe6238 Author: Alan Garny '' Date: Thu Sep 1 22:05:30 2016 +0200 CellML editing views: the MathML viewer now properly updates once again '(closes' '#1096).' commit b050bdca827b2feb0cac8db8748e76eb10cc5189 Author: Alan Garny '' Date: Thu Sep 1 21:55:06 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit dfd79ab0d38554bce97de0061e894782a8a26e58 Author: Alan Garny '' Date: Thu Sep 1 20:41:45 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit da21e1c75cb3f7a0d230925a05c61ca47a5c9909 Author: Alan Garny '' Date: Thu Sep 1 18:09:09 2016 +0200 Some minor cleaning up. commit 6b8dbdf64fea20470efa1e1f66c42e683cbbba03 Author: Alan Garny '' Date: Thu Sep 1 09:01:51 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit a1d93c699bc72c35f747651fd650115ad5a44c75 Merge: 896c5e75d 76cab60ea Author: Alan Garny '' Date: Wed Aug 31 23:16:01 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 76cab60ead23061615dfbf23b53af6dffe3fddeb Author: Alan Garny '' Date: Wed Aug 31 23:14:52 2016 +0200 Single Cell view: some additional work on fixing the style of the toolbar being sometimes wrong '(#1082).' Indeed, I completely overlooked the case of '(re)loading' a remote CellML 1.1 file, which means also some small work on our Raw CellML view. commit 896c5e75dd1592d058d8d18a81dc9bfae13b4887 Author: Alan Garny '' Date: Wed Aug 31 21:31:43 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit a8bca9911fc6e739f8bf1a77c2c816ea22be7ea4 Author: Alan Garny '' Date: Wed Aug 31 18:21:38 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit a4355c0705c2f798521106792db22f53300f2b72 Author: Alan Garny '' Date: Wed Aug 31 15:22:02 2016 +0200 Revert '"Single' Cell view: some work on fixing a small problem with a missing variable using a CellML 1.1 model '(#1095)."' This reverts commit a790c673d55509f32f1bbb32ae7e3756b28dfed1. commit a790c673d55509f32f1bbb32ae7e3756b28dfed1 Author: Alan Garny '' Date: Wed Aug 31 15:20:04 2016 +0200 Single Cell view: some work on fixing a small problem with a missing variable using a CellML 1.1 model '(#1095).' commit 5b8828391fcc90237ea17cb31118795799f65d72 Author: Alan Garny '' Date: Wed Aug 31 15:19:11 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit df740674d4b01d9683be6eaedb4ef89c3cbf3114 Author: Alan Garny '' Date: Wed Aug 31 15:10:37 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit c3476669e73a97593b80e3936c7994d4aa639f21 Author: Alan Garny '' Date: Tue Aug 30 23:48:52 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 47849ee9f4997e09ecd9fc955dab53f5ee2428b4 Author: Alan Garny '' Date: Tue Aug 30 21:24:01 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 4104483b9fca8dc45c4fa50df83ee03bbeda5f66 Author: Alan Garny '' Date: Tue Aug 30 21:11:04 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 72031a6360d15a18f726fe03bdbbc998cdd12f62 Author: Alan Garny '' Date: Tue Aug 30 18:15:09 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit dddddb99211d343f4f006a8b04bcf4f97d9cc5fb Author: Alan Garny '' Date: Tue Aug 30 17:25:15 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 92d2a54191521908e8ca9098255aa5896671985c Author: Alan Garny '' Date: Tue Aug 30 16:01:03 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 381b1431f2b3fa370e54199f1fc28005de4e3370 Merge: 38496782d df903cc3f Author: Alan Garny '' Date: Tue Aug 30 14:57:46 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit df903cc3fd13e8b30eb22c20c7383d163f523b88 Author: Alan Garny '' Date: Tue Aug 30 14:56:47 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 38496782d94c20a301ac7a50cf05e72037ef8376 Author: Alan Garny '' Date: Tue Aug 30 11:31:39 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 63e13b6b4fb1489642c7c641d53df0ee0bc9b8a4 Author: Alan Garny '' Date: Tue Aug 30 11:18:07 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 6f171ccfca95f5eb5c6995f5f85ae28ab16be354 Author: Alan Garny '' Date: Tue Aug 30 11:07:24 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit e693352d34ed806e6c7ca3a34039f9953391638e Merge: a4e5bd61e 735a7b673 Author: Alan Garny '' Date: Mon Aug 29 17:37:22 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 735a7b673adea1b63d2091a936c7a37b005f9e83 Merge: 43877840e 9f9b9d647 Author: Alan Garny '' Date: Mon Aug 29 17:36:17 2016 +0200 SED-ML capable editing views: fixed a problem with the GUI flashing for a split second when reloading a SED-ML file that was previously viewed using the Single Cell view '(closes' '#1093).' commit 9f9b9d647bd272466a7320b557ec0e033b228c24 Author: Alan Garny '' Date: Mon Aug 29 17:12:26 2016 +0200 SED-ML capable editing views: fixed a small problem with the GUI flashing for a split second when reloading a SED-ML file that was previously viewed using the Single Cell view '(#1093).' commit 43877840e9ea1572dfd0c05960e073e2d4ec1ebb Author: Alan Garny '' Date: Mon Aug 29 17:02:50 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit dd66ab3db54a2085b56ea148a2bd14334909e9e3 Author: Alan Garny '' Date: Mon Aug 29 16:38:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b6767b91e9439ba2d6713bf1533923a262b95a29 Author: Alan Garny '' Date: Mon Aug 29 11:56:23 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit a4e5bd61ef4fd461e76195386794907f7f01ed29 Merge: 343f17106 b890ee279 Author: Alan Garny '' Date: Mon Aug 29 00:02:51 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit b890ee2790802044832c8bcd402771775036f10a Merge: 4493b5fa9 f4e2cce75 Author: Alan Garny '' Date: Mon Aug 29 00:00:53 2016 +0200 Single Cell view: fixed the style of the toolbar being sometimes wrong '(closes' '#1082).' commit 4493b5fa983101a7b730df237853b6cfc5b3dcc9 Author: Alan Garny '' Date: Sun Aug 28 23:51:54 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit f4e2cce751930578979a4b6880e1dc8780e650f5 Author: Alan Garny '' Date: Sun Aug 28 23:06:44 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit 1c617bf5a7d0fff1fccb1ae5678d561f91e12a8d Author: Alan Garny '' Date: Sun Aug 28 21:06:03 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit e10a9fff4c5fff06fb6792d044dd3545ab0e307b Author: Alan Garny '' Date: Sun Aug 28 20:29:50 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit 07fc8fea870c3721855cef222ee4c9b2395005fe Author: Alan Garny '' Date: Sun Aug 28 18:48:42 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit 68ada0a0879f10e8b1befb7ce86737f032407fb9 Author: Alan Garny '' Date: Sun Aug 28 18:03:10 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit e3d810447a33ff498a0627fb646018bcb1db5e00 Merge: 008822d74 e4e00ae8d Author: Alan Garny '' Date: Sun Aug 28 15:05:18 2016 +0200 Merge branch ''\''master'\''' into issue1082. commit 343f17106fad36575068255f1b3730326869b7c9 Merge: af80d86e0 e4e00ae8d Author: Alan Garny '' Date: Sun Aug 28 15:05:00 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit e4e00ae8d826d6d7de6ecbf1a855a2ea7b076715 Author: Alan Garny '' Date: Sun Aug 28 15:04:14 2016 +0200 Editing views: fixed a small problem with the reloading of a file resulting in an empty view '(closes' '#1091).' commit 2ba0c00e6b024a98ff4fd9f77f7658af17afad9c Author: David Brooks '' Date: Sun Aug 28 13:13:13 2016 +0100 Get Python and PythonQt building under Windows... commit 008822d74c2b55918440a063c5e7428ab692ca19 Merge: f2dc0ef63 6fd720afe Author: Alan Garny '' Date: Sun Aug 28 14:20:00 2016 +0200 Merge branch ''\''master'\''' into issue1082. commit af80d86e0f167f481eea2c8c4afc9feba9fd5e95 Merge: 5c23423a8 6fd720afe Author: Alan Garny '' Date: Sun Aug 28 14:19:42 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 6fd720afeb30d7d491eecd2b3abe9557f077652b Author: Alan Garny '' Date: Sun Aug 28 14:18:53 2016 +0200 Raw SED-ML view: fixed a small problem with the 'editor'\''s' list not being shown anymore '(closes' '#1090).' commit 7c1019704a37055f6231b7e33299ea7dea8c9628 Author: Alan Garny '' Date: Sun Aug 28 12:18:16 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f2dc0ef633b3bc5adba4a0b704d0ee09522609eb Merge: 487accf21 22e834aa9 Author: Alan Garny '' Date: Sat Aug 27 23:28:45 2016 +0200 Merge branch ''\''master'\''' into issue1082. commit 5c23423a85eb6b0e5c525c47bbc7fe0d676641db Merge: 82158a791 22e834aa9 Author: Alan Garny '' Date: Sat Aug 27 23:28:28 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 22e834aa9d7173672ea76d342f646b1d1e6d891d Author: Alan Garny '' Date: Sat Aug 27 23:20:40 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 487accf216858868b0e84b79bd1327881769749b Author: Alan Garny '' Date: Sat Aug 27 21:46:43 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit 1eb9cd19ea2891bcddf43cf83bcf11c71639b730 Merge: 518366937 eb19d5d0f Author: Alan Garny '' Date: Sat Aug 27 15:12:04 2016 +0200 Merge branch ''\''master'\''' into issue1082. commit 82158a7916dbebb8b7beaa491906cc358e620647 Merge: e8e3a381a eb19d5d0f Author: Alan Garny '' Date: Sat Aug 27 15:07:40 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit eb19d5d0f01c5f659d6811d052524d3fe677c8af Author: Alan Garny '' Date: Sat Aug 27 15:07:18 2016 +0200 Some minor cleaning up. Removed some unnecessary references to the OpenCOR namespace. commit b414a875528bacb5edc8699ba4c0a75755bdd60f Author: David Brooks '' Date: Fri Aug 26 15:14:21 2016 +0100 Always build Python '(until' we setup the download of a pre-built 'system)' and exclude the built files from git '(#1085).' commit 804ead387853cc41cd7e0d79906bba868b29c800 Author: David Brooks '' Date: Fri Aug 26 15:08:35 2016 +0100 Initialise/finalise the Python library in its plugin '(#1085).' commit 761b5fbe30dc712a0ef3322baf16970a798c028c Author: David Brooks '' Date: Fri Aug 26 15:07:30 2016 +0100 Tidy up Python build process '(#1085).' commit b4d32fb11132157804672250d3703c279efce698 Author: David Brooks '' Date: Fri Aug 26 15:05:48 2016 +0100 Python build 'can'\''t' use QT_KEYWORDS as the name '`slots`' is used in a header file '(#1085).' commit a3990e41544b068742be7fd61e3c89579cc25324 Author: David Brooks '' Date: Fri Aug 26 11:37:01 2016 +0100 Rework Python build to allow us to use '`find_package()`' to get configuration '(#1085).' commit 51836693718ea70d4aab94440c2bc4cf356aeadd Author: Alan Garny '' Date: Fri Aug 26 09:49:49 2016 +0200 Single Cell view: some work on fixing the style of the toolbar being sometimes wrong '(#1082).' commit e8e3a381ae88333e44a51fd82bd30f1d6688c07b Merge: f76682ec8 df25e03da Author: Alan Garny '' Date: Fri Aug 26 08:26:10 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit df25e03da8d7e81809bbf64a3270f1168e094426 Author: Alan Garny '' Date: Fri Aug 26 08:20:53 2016 +0200 Interfaces: removed '`haveViewWidget()`' from the View interface '(it'\''s' not used 'anymore).' commit 97b44e230eff1d93e68ace91f6eaec5cc845a81b Author: Alan Garny '' Date: Fri Aug 26 08:07:42 2016 +0200 Travis CI: their OS X issue has been resolved, so re-enable OS X builds. commit 78501ed80a86190996c5bfee4dd9460acf49fdde Author: Alan Garny '' Date: Thu Aug 25 20:02:26 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4d91280007b4aa7431e5d2c4f11ffe1b940a1db7 Author: Alan Garny '' Date: Thu Aug 25 19:46:29 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e1482ba168b32f93960a6a2b4ef2f79e2e8999ff Author: Alan Garny '' Date: Thu Aug 25 19:38:22 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit cffadb04a358f2925335e31767803d4b54fd5111 Author: David Brooks '' Date: Thu Aug 25 16:38:32 2016 +0100 Commit e115539 means we no longer have to undefine '`UNICODE`' '(#1085).' commit ce2b807b743e3517380e8bc5704e017de3140d48 Author: David Brooks '' Date: Thu Aug 25 16:37:26 2016 +0100 Tidyup to Python 'plugin'\''s' configuration '(#1085).' commit ffd7e0f645d8bbcd7b7b0639b70804e7a3dfae7e Author: David Brooks '' Date: Thu Aug 25 16:36:23 2016 +0100 Initial checkin of PythonQt plugin '(#1086).' commit f0424db8474a31f8c0f9a05067a6ddf33acad0da Merge: 38e009887 c4078ae14 Author: David Brooks '' Date: Thu Aug 25 16:06:38 2016 +0100 Merge branch ''\''master'\''' into pythonplugin commit 38e00988796fc262f4d77d607941f2e393d312a7 Author: David Brooks '' Date: Thu Aug 25 16:02:29 2016 +0100 Initial version of Python plugin '(#1085).' commit c4078ae1467b4c55ef99c471c18b5552fcbdcf75 Author: Alan Garny '' Date: Thu Aug 25 16:18:59 2016 +0200 Some minor cleaning up '[ci' 'skip].' We $'don\342\200\231t' call 'QCoreApplication::processEvents(),' so we $'don\342\200\231t' need this anymore '(this' used to be related to issue '#1027).' commit 4e2dfc70606fe77f92e0fdca55164f7d2fe464dc Author: Alan Garny '' Date: Thu Aug 25 16:14:16 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f76682ec8cc8707ad0027d522464e1ff1e081ea8 Merge: 0ec929e0e 392973584 Author: Alan Garny '' Date: Thu Aug 25 15:37:50 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 392973584316fad2d1e1364f31de379535f1cb19 Author: Alan Garny '' Date: Thu Aug 25 15:36:22 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0ec929e0ed26de2fa686ce9624b1dc691fd8dfb1 Author: Alan Garny '' Date: Thu Aug 25 15:28:34 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit dfbeeca467bc8ed8d95d20dad5faec892f27b0ba Merge: da1e47e7b 144ed777a Author: Alan Garny '' Date: Thu Aug 25 14:58:53 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 144ed777abfc27d3de8550b38ac43a67a99702be Author: Alan Garny '' Date: Thu Aug 25 14:09:42 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f42b9473614eceb9163cc56ab97df1123504970 Author: Alan Garny '' Date: Thu Aug 25 13:37:23 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9de062e2b6b5a2e940df3515696daece49d8cdd3 Author: Alan Garny '' Date: Thu Aug 25 13:27:26 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit da1e47e7bbd9161c27caa5745336747bd7b5762d Merge: ed7d28c6c 11b0fb48e Author: Alan Garny '' Date: Thu Aug 25 12:47:31 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 11b0fb48e85a716ab8b2fa97c0b45415cd12e75d Merge: 980047490 aa69932c1 Author: Alan Garny '' Date: Thu Aug 25 12:46:12 2016 +0200 Fixed a crash that occurred after running and closing some SED-ML files '(closes' '#1083).' commit aa69932c15a7068fa287a473ec2a7a490f623739 Author: Alan Garny '' Date: Thu Aug 25 11:54:08 2016 +0200 Travis CI: temporarily disable OS X builds due to a huge backlog on their system. commit 980047490781bcb3be635f9c862774d1f01afdb3 Author: Alan Garny '' Date: Thu Aug 25 11:21:23 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit 75c35194d5e25c2a2aea5d7f44980809fb941f19 Author: Alan Garny '' Date: Thu Aug 25 11:12:26 2016 +0200 Single Cell view: some work on fixing a crash that occurs after running and closing a SED-ML file '(#1083).' commit e24042dc40f7e97c3dd9e3dc1539ceac86eaa41a Author: Alan Garny '' Date: Wed Aug 24 23:19:23 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit ed7d28c6cf437e35427af324f9e2d2d793bfadce Merge: b1cb73409 7c86d208a Author: Alan Garny '' Date: Wed Aug 24 18:46:01 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 7c86d208a7ac684cbc9af1d62200ad162078e6f7 Author: Alan Garny '' Date: Wed Aug 24 18:45:42 2016 +0200 Improved our solution for issue '#1044.' commit b1cb7340911337674624de66012ef4f2cc405b8b Merge: 6521687aa 864e28ea8 Author: Alan Garny '' Date: Wed Aug 24 17:32:42 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 864e28ea85a5f62257c2f518a85f198973d93003 Author: Alan Garny '' Date: Wed Aug 24 17:32:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit dd92cefa79c9a76beb1be7dcdd23f5fdcfff4f59 Author: Alan Garny '' Date: Wed Aug 24 16:28:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 6521687aa95dab206399c3807548bb453921bc56 Author: Alan Garny '' Date: Wed Aug 24 16:05:45 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit c663d72c1a32e91899895bbaf97998b069e1cea9 Author: Alan Garny '' Date: Wed Aug 24 16:04:55 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit dddbfcc730257ba1c8fcf6d7efbb9b10f721a043 Merge: 8da8518dd e95c94630 Author: Alan Garny '' Date: Wed Aug 24 15:48:07 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit e95c94630fdfa3ac07b47f95925b1e49e44d318a Author: Alan Garny '' Date: Wed Aug 24 15:47:55 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit d223cdb7f41e6c4d801d45d7b54035ba6307146a Author: Alan Garny '' Date: Wed Aug 24 15:46:16 2016 +0200 Functional tests: added a local version of our SED-ML file '[ci' 'skip].' commit 9d90420ba094aef8f375c2cb4de623ced3cf9125 Author: Alan Garny '' Date: Wed Aug 24 15:45:49 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 8da8518dd382d9df5a7dbc22d115cfb1227b1bfd Author: Alan Garny '' Date: Wed Aug 24 15:08:05 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 65cec8f3d9915c399bc81c8436cfa083e00fd382 Author: Alan Garny '' Date: Wed Aug 24 14:55:22 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 0734d705099b4d0cc3f8dd0b1e389e583b4ced8a Merge: c16311005 e11553967 Author: Alan Garny '' Date: Wed Aug 24 13:54:13 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit e1155396788e5c29744570f8aa3a83ed0c35b700 Merge: 4db39a350 088591742 Author: Alan Garny '' Date: Wed Aug 24 13:53:22 2016 +0200 General: 'don'\''t' define '(_)UNICODE' globally anymore '(closes' '#1080).' commit 0885917425f9607358213a4959a573b11fcd8dae Author: Alan Garny '' Date: Wed Aug 24 13:28:17 2016 +0200 General: some work on not defining UNICODE globally '(#1080).' commit 1d8c228586d396e1d1d53437a01a83b87ca11bc6 Author: Alan Garny '' Date: Wed Aug 24 10:24:55 2016 +0200 General: some work on not defining UNICODE globally '(#1080).' commit 327af0a1b677889328e49cceafcf8d09180c12f0 Author: Alan Garny '' Date: Wed Aug 24 10:08:45 2016 +0200 General: some work on not defining UNICODE globally '(#1080).' commit c16311005dc67b426765123d80ce49604f2ffd7c Author: Alan Garny '' Date: Wed Aug 24 10:07:47 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 53cde4d2e5b64b2ac5bd9e788e4f5f24bcf693a7 Author: Alan Garny '' Date: Wed Aug 24 09:45:02 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit e3330134aa604c41cdddc6909264e11b4b611fd0 Author: Alan Garny '' Date: Wed Aug 24 09:14:13 2016 +0200 General: some work on not defining UNICODE globally '(#1080).' commit 8520ad6100caf7b9f9f2b506882522602df2d22c Author: Alan Garny '' Date: Tue Aug 23 18:30:07 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 337480bc10366a6a258fda0ddf51c85939860b7d Author: Alan Garny '' Date: Tue Aug 23 17:30:09 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 8014be38349f423937dd199196d4a582ea701900 Author: Alan Garny '' Date: Tue Aug 23 17:23:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 34294a4f864efdf271753815beb6eb1e516a24b6 Author: Alan Garny '' Date: Tue Aug 23 17:20:13 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 556f0222955d468699457e1d56d61a45e104dc09 Author: Alan Garny '' Date: Tue Aug 23 15:40:40 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 1c53a26c41d2707143bb8abbfd75aecb8c92d5cb Author: Alan Garny '' Date: Tue Aug 23 15:37:03 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Note that for our downloads page, we had to $'\342\200\230hard-code\342\200\231' some colours. This is the case, for example, with the border colour for div.official and div.officialSection. Indeed, we would normally have used 'rgba(118,' 146, 60, '0.39),' but because those two divs have different background, the resulting border $'wasn\342\200\231t' quite of the same $'colour\342\200\246' commit 970114b9cfa59feb6831c7b24e653bce9835a823 Author: Alan Garny '' Date: Tue Aug 23 14:26:08 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' commit 1804a6a9364c762f690fb8b194cb05c390bc51df Merge: 5e6c8937c 4db39a350 Author: Alan Garny '' Date: Tue Aug 23 13:56:38 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 4db39a35081d24446f69024845409f152e366a12 Author: Alan Garny '' Date: Tue Aug 23 13:54:56 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit d7fdd9166c566a4b364acbc4d19c8e06a0c2dcd1 Merge: 555cf7882 065cc559e Author: Alan Garny '' Date: Tue Aug 23 13:52:30 2016 +0200 Data stores: fixed a small problem with the number of selected variables being wrongly tracked during an export '(closes' '#1076).' commit 065cc559e5449a76e4d2d3ca0084368dfb13bc68 Author: Alan Garny '' Date: Tue Aug 23 13:21:26 2016 +0200 Data store export: some work on fixing a small problem with the number of selected variables being wrongly tracked '(#1076).' commit 0533bc2bc485953971536b894845aeb49afe4dd1 Author: Alan Garny '' Date: Tue Aug 23 12:48:12 2016 +0200 Data store export: some work on fixing a small problem with the number of selected variables being wrongly tracked '(#1076).' commit 6f345ba1232954c7549fba38d9518794576153d0 Author: Alan Garny '' Date: Tue Aug 23 12:43:08 2016 +0200 Some minor cleaning up. commit 564479959f7af957bc9d53076acbaf970110516a Merge: 75fe35b4f 555cf7882 Author: David Brooks '' Date: Tue Aug 23 09:51:20 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 5e6c8937c4881f5d39e066889f863681bf39972e Merge: cf437638b 555cf7882 Author: Alan Garny '' Date: Tue Aug 23 10:29:43 2016 +0200 Merge branch ''\''master'\''' into issue1047. commit 555cf7882292e48e13a3916f423d892c37213552 Author: Alan Garny '' Date: Tue Aug 23 10:28:43 2016 +0200 Slight update to the downloads page '[ci' 'skip].' commit c1286ee7bce621793b7daa103c46163bc15185dc Merge: 7e72e248d d5312de1b Author: Alan Garny '' Date: Tue Aug 23 10:25:07 2016 +0200 General: now use specific text interaction flags for a/n information/question/warning/critical/about message box '(closes' '#1077).' commit d5312de1bd599349f152519a7f06aedb7fac511e Author: Alan Garny '' Date: Tue Aug 23 09:55:54 2016 +0200 Sample plugins documentation: updated some line numbers. commit 718482b8fa54f9b5ad96a530b27a7b83e3891dd7 Author: Alan Garny '' Date: Tue Aug 23 09:11:13 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 7d4113f2a9869742e4293568482f8474e218b00d Author: Alan Garny '' Date: Tue Aug 23 09:00:05 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 6d361cd9166dbd3696ec28e74b757d95521c224b Author: Alan Garny '' Date: Tue Aug 23 08:44:29 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 1f7593d3b1518270179f9c925d7d2819f0ba621b Author: Alan Garny '' Date: Mon Aug 22 18:43:15 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 6dbb2e17888f560e07c512da3f81b06749904849 Author: Alan Garny '' Date: Mon Aug 22 18:18:20 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 4c7fc6df0ed5a1fd885f4a74feafc416afa96c5f Author: Alan Garny '' Date: Mon Aug 22 18:00:58 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit 2996f4d38f947fdf1e29e80ea503b1b94ff69e08 Author: Alan Garny '' Date: Mon Aug 22 18:00:37 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit e92f701e423274deb2858bfaf013547cea797072 Author: Alan Garny '' Date: Mon Aug 22 17:39:45 2016 +0200 General: some work on providing a way to customise the text interaction of a/n information/question/warning/critical/about message box '(#1077).' commit cf437638be5605455efa959cb2657437af04e9bb Author: Alan Garny '' Date: Mon Aug 22 14:41:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Fixes a minor issue with the $'what\342\200\231s' new anchor to use for a particular version of OpenCOR. commit 75fe35b4f0574343b6310f32fb1cd815b937b694 Merge: 2fd5682f8 b8ba0d0f1 Author: David Brooks '' Date: Mon Aug 22 13:32:01 2016 +0100 Merge branch ''\''selectmessages'\''' into pmrworkspace commit 2fd5682f82051c35ff225c8d7b3a3e5b53272f49 Merge: 63456adcd 7e72e248d Author: David Brooks '' Date: Mon Aug 22 13:30:28 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit b8ba0d0f1c0cb2d8b713d3d868929fe001ea423a Merge: ffbebdeca 7e72e248d Author: David Brooks '' Date: Mon Aug 22 13:29:36 2016 +0100 Merge branch ''\''master'\''' into selectmessages commit ffbebdeca0ec0b7213fc6e2a2be2f31ce15473d5 Author: David Brooks '' Date: Mon Aug 22 13:28:12 2016 +0100 General: allow user to select text in message boxes. commit 63456adcddac23fdad96eb6fe6662203ea3e5b18 Author: David Brooks '' Date: Mon Aug 22 13:23:45 2016 +0100 PMR Workspace window: provide clickable links to workspace in PMR '(#1066).' commit 774e4b296d8d8c13bdf7228de8e3e27e8cda79aa Author: Alan Garny '' Date: Mon Aug 22 14:04:11 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Slight improvements '(to' the 'size)' of our other images '(using' 'https://pixlr.com/editor/).' commit 4ed8fc6585acb1fa4fba3c26ab49a4788e8d7076 Author: Alan Garny '' Date: Mon Aug 22 13:50:21 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Updated our Windows and OS X logos. commit 2fe91f0a168f2bb8868dba78838bc746fe9feaf6 Author: Alan Garny '' Date: Mon Aug 22 11:26:36 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Slight update to our README.md file. commit 1fa0d1dd0502cbc00c6a735d0aee588ad79055f5 Author: Alan Garny '' Date: Mon Aug 22 10:25:18 2016 +0200 Some work on updating the documentation in preparation for the 0.5 release '(#1047).' Some minor cleaning up. commit 7e72e248d721ea4261e75bb6462e47262344d999 Author: Alan Garny '' Date: Sun Aug 21 19:11:12 2016 +0200 Single Cell view: the reloading of a SED-ML file only results in the GUI being temporarily disabled when its corresponding view is visible '(closes' '#1074).' commit 9948641b066e808297919a5b72a6b713efc37921 Author: Alan Garny '' Date: Sun Aug 21 19:09:49 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9ee45c4491540b3c2241c004eed879a128108916 Author: Alan Garny '' Date: Sun Aug 21 17:38:53 2016 +0200 File handling: fixed a small problem with a changed file/dependency resulting in OpenCOR asking to reload it / its owner twice in a row '(closes' '#1073).' Hmm, commit 42cbfeb works fine on OS X, but not on Windows, so we had to come up with another $'solution\342\200\246' commit e6742176efd25386037448854f5b50445a8a834b Author: Alan Garny '' Date: Sun Aug 21 17:26:00 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 42cbfeb1d944d97e9acedb747878f9444d26b72f Author: Alan Garny '' Date: Sun Aug 21 15:47:55 2016 +0200 File handling: fixed a small problem with a changed file/dependency resulting in OpenCOR asking to reload it / its owner twice in a row '(closes' '#1073).' commit b88af0dab10cb01b561b45d163ce490b9db5b468 Author: Alan Garny '' Date: Fri Aug 19 20:07:44 2016 +0200 Graph panel widget: improved the plotting of data '(related' to issue '#671).' I thought I was done with issue '#671,' but I got a black plot when trying to plot two successive '(in' the list of 'parameters)' parameters against the VOI. Upon analysis, the black plot was due to 'GraphPanelPlotWidget::drawGraphFrom()' replotting itself and reallowing direct painting. However, the replotting $'wasn\342\200\231t' done yet and because direct painting was reallowed, the next call to 'GraphPanelPlotWidget::drawGraphFrom()' '(for' the second model 'parameter)' did a direct painting. Hence, the black plot. The idea was therefore not reallowing direct painting straightaway, but only after the replotting has occurred. While at it, we also prevent successive calls to 'replot()' in 'GraphPanelPlotWidget::drawGraphFrom().' commit ced88a15921042b7d0a63d83c9b12b02a943f474 Author: Alan Garny '' Date: Fri Aug 19 18:04:29 2016 +0200 Some minor cleaning up following our work on issue '#1071' '[ci' 'skip].' commit 385e2e4fbea7d4a12287bc53c6fce1350f3cf04c Author: Alan Garny '' Date: Fri Aug 19 17:47:12 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 808bdfd3b8dae8b412753db6bbb863f8ab52211c Merge: 3a50cb2bb 5d99fd295 Author: Alan Garny '' Date: Fri Aug 19 16:41:24 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation '(closes' '#1071).' commit 5d99fd29599d6f2c4ed7009946f3830e33f28bd7 Author: Alan Garny '' Date: Fri Aug 19 16:18:50 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation '(#1071).' commit 9ca6ca920457b7ca94c9dfd9dacaa67c434868a3 Author: Alan Garny '' Date: Fri Aug 19 16:11:57 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation '(#1071).' commit 5ddca16dc6e6e530cf0bea4634137ede74dcb225 Author: Alan Garny '' Date: Fri Aug 19 16:08:01 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation '(#1071).' commit a2ec59d2a7319ffda155d959327713a91895e3ef Author: Alan Garny '' Date: Fri Aug 19 15:57:55 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage in the case of an unfinished simulation '(#1071).' commit 37aad8147b59cd1841bc34380b7f76fcf434024a Author: Alan Garny '' Date: Fri Aug 19 15:53:54 2016 +0200 Single Cell view: prevent simulation data export from generating some garbage data in the case of an unfinished simulation '(#1071).' commit 3a50cb2bb5bc4627600a80b04f0818252a00260b Author: Alan Garny '' Date: Thu Aug 18 11:40:58 2016 +0200 Travis CI: ''\''explain'\''' why we 'don'\''t' use the prebuilt version of QScintilla on Linux. commit 3e07b5bc917f9f7ca9827afade6f789e3d777177 Author: Alan Garny '' Date: Thu Aug 18 09:13:42 2016 +0200 Travis CI: allow builds from the travis-ci branch. commit be98e3daf304d200d9d6c755c249088f427c4846 Author: Alan Garny '' Date: Wed Aug 17 19:11:43 2016 +0200 Travis CI: done determining why things were not working on Linux anymore. On Linux, to link CellMLTextView_conversiontests and CellMLTextView_parsingtests results in an error about '`__cxa_throw_bad_array_new_length@Qt_5`' not being defined in libQScintilla.so. $'It\342\200\231s' not clear yet why it is the case since everything works fine locally '(and' when 'deployed).' However, to build QScintilla ourselves '(rather' than using its prebuilt 'version)' $'\342\200\230solves\342\200\231' the problem, $'so\342\200\246' commit f1d96ff7674604868b4c95bb68d2013d79358d9b Author: Alan Garny '' Date: Wed Aug 17 18:48:20 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 550fe497cd441ddc493e9103c1dd5d3d552184db Author: Alan Garny '' Date: Wed Aug 17 18:01:46 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 1495f57d818818999a98db593b0fe382aacce6d6 Author: Alan Garny '' Date: Wed Aug 17 17:12:53 2016 +0200 Some minor cleaning up '[ci' 'skip].' Oops, had accidentally removed the x bits. commit 606f60e78edd04a1d2a7037189a0faa921b20247 Author: Alan Garny '' Date: Wed Aug 17 17:11:08 2016 +0200 Some minor cleaning up '[ci' 'skip].' Oops, had accidentally removed the x bits. commit 6a42ade53b771a31cc3c35c0dfa0c68fdd94d509 Author: Alan Garny '' Date: Wed Aug 17 16:45:39 2016 +0200 Some minor cleaning up. commit 6e55d4a40888b7fcb066341f63fe0657c56215f0 Author: Alan Garny '' Date: Wed Aug 17 15:21:15 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 3590ac08a03e511f775cad9bd458a5ed4a0dc83f Author: Alan Garny '' Date: Wed Aug 17 13:50:43 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 3374c5d9940ec71ac45c374e039894f422e0c57c Author: Alan Garny '' Date: Wed Aug 17 13:44:52 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit 14646946f23c3a9e04c15a5b3f15da930dfaa964 Author: Alan Garny '' Date: Wed Aug 17 13:13:42 2016 +0200 Travis CI: try to determine why things are not working on Linux anymore. commit cf30da0265fe301d4cb4540281ef76b9a2e0fbd5 Merge: f57ce9610 27532519b Author: Alan Garny '' Date: Wed Aug 17 11:46:07 2016 +0200 QScintilla: upgraded to version 2.9.3 '(closes' '#1067).' commit 27532519bc8969fae73fe8246ebc8c91f1dc43de Author: Alan Garny '' Date: Wed Aug 17 11:44:24 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 '(#1067).' commit c40415ebd1bb54b21eb9f3535df6afcf9d112e01 Author: Alan Garny '' Date: Wed Aug 17 11:37:58 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 '(#1067).' commit f64fe050fd770257401354d87aa9ef17d83ce111 Author: Alan Garny '' Date: Wed Aug 17 11:28:27 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 '(#1067).' commit 70a9846ecb9b553187361d7940d464e7a54a1c85 Author: Alan Garny '' Date: Wed Aug 17 11:27:07 2016 +0200 QScintilla: some work on upgrading to version 2.9.3 '(#1067).' commit f57ce96103f7e331e8ae14c6848ca34e34c5381b Author: Alan Garny '' Date: Wed Aug 17 10:25:36 2016 +0200 Oxygen library: upgraded to version 5.24.0. commit 5553551e417cb315464fa139fe77df253f1d6cd7 Author: Alan Garny '' Date: Wed Aug 17 10:24:49 2016 +0200 Developer documentation: some minor cleaning up '[ci' 'skip].' commit 56077eab0392bae5344b41fe697b4ddc1f117202 Author: David Brooks '' Date: Sun Aug 14 14:07:30 2016 +0100 Use '`opencorActive()`' from core GUI utilities '(#1056).' commit bcde738783e153de3ec50ffc844cf2a1e2de2f31 Merge: d93fe322c 474bb0aca Author: David Brooks '' Date: Sun Aug 14 14:01:40 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 474bb0aca7419ada6e011a19eb1a2a19da0df9ea Merge: 5eb95565d e94b29574 Author: David Brooks '' Date: Sun Aug 14 13:58:51 2016 +0100 Merge pull request '#1064' from dbrnz/opencoractive Refactoring: move '`opencorActive()`' to core GUI utilities. commit e94b295741486df4cd1d3e30b917fd0969da8074 Author: David Brooks '' Date: Sun Aug 14 13:54:28 2016 +0100 Refactoring: '`opencorActive()`' will also be used by 'workspaces'\''' widget, so move it to core GUI utilities. commit d93fe322c785c15346f355db3a3ac67dfd0fba27 Author: David Brooks '' Date: Sun Aug 14 13:46:26 2016 +0100 Set the active directory when a workspace is set current '(#969).' commit 466f5f276093262281939ef55a8581988d381ee7 Author: David Brooks '' Date: Sun Aug 14 12:50:15 2016 +0100 Allow for a missing FETCH_HEAD when attempting a git merge '(#1058).' commit 5eb95565dc3775df09f89ebf0845d7e85b2a4653 Author: Alan Garny '' Date: Sat Aug 13 20:22:37 2016 +0200 libgit2: fixed commit 9ca3103. commit 8cd6417fe7c79210f959367c43ae6765f36ddb16 Author: David Brooks '' Date: Sat Aug 13 15:39:53 2016 +0100 Small code tidy '(#969).' commit 1ddea2e90c3dc4bb686dfcbe67fddad84d67764d Author: David Brooks '' Date: Sat Aug 13 15:39:08 2016 +0100 Show details of conflicting lines when there is merge conflict '(#1058).' commit ef98b5b5172a7548c49dd4196df6708419588f95 Author: David Brooks '' Date: Sat Aug 13 15:37:53 2016 +0100 Git fast-forward merge working '(#1058).' commit c3a23c485ea6f11c9ff05e890dfbd2dbf9ea2617 Author: David Brooks '' Date: Sat Aug 13 15:37:11 2016 +0100 Code tidying up '(#1058).' CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Improve error messages. CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Add TODO comments. CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Always clear updated/conflict list before a merge. commit 18f86b990eaeb9ea42a618c1c114b26e41e4775f Author: David Brooks '' Date: Sat Aug 13 15:27:51 2016 +0100 Workspaces were being '(re-)opened' instead of being checked to see if they had been opened '(#1058).' commit 9ca31039728abe27dcbe340676302dc213f2fc92 Author: Alan Garny '' Date: Sat Aug 13 11:05:00 2016 +0200 libgit2: slight cleaning up '[ci' 'skip].' commit a4d57a40b87b74f919343199ef67b3dcd4c3695d Author: David Brooks '' Date: Fri Aug 12 17:10:57 2016 +0100 We had lost our icons for logging on/off PMR '(#1058).' commit 4e69229e188a8a25164eecfeed66247b7dce027d Merge: bba5b1ff2 7ed1d0601 Author: David Brooks '' Date: Fri Aug 12 16:38:45 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 7ed1d060188b00d78776fb702f3df7e0edf29647 Merge: cbd534c94 e8e89de41 Author: David Brooks '' Date: Fri Aug 12 16:36:29 2016 +0100 Merge pull request '#1063' from dbrnz/libgitbuild libgit2: find OpenSSL include files when they are in non-standard locations commit e8e89de41c385ed58eb3a1d0573a82e6118bb47f Author: David Brooks '' Date: Fri Aug 12 16:31:12 2016 +0100 libgit2: find OpenSSL include files when they are in non-standard locations. commit bba5b1ff27293acebc249f6ff357dbec93a64e02 Merge: 0b4af6692 cbd534c94 Author: David Brooks '' Date: Fri Aug 12 16:25:28 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 0b4af6692c17e9aff9256695867b801a249ed078 Author: David Brooks '' Date: Fri Aug 12 16:17:43 2016 +0100 'Don'\''t' try to refresh an unopened workspace '(#969)' commit 9028bb3c9e22de9e205b66f91ce59e5b0283417e Author: David Brooks '' Date: Fri Aug 12 16:17:03 2016 +0100 Code tidy up '(#969)' CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Set the 'workspace'\''s' description and owner when 'it'\''s' constructed. CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Allow informative messages about workspace operations to be emitted. CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Show git errors in the debugging log. commit 4708484aba341e0b83926dbd368d74bd0ff97a9f Author: David Brooks '' Date: Fri Aug 12 16:08:53 2016 +0100 Implement PMR workspace synchronisation '(#1058)' commit e70d101ac0cfd37175c337567290f7a522290a01 Author: David Brooks '' Date: Fri Aug 12 16:00:56 2016 +0100 Improve expanding/collapsing of workspace tree '(#969)' commit cbd534c94a3e4662c55fcb93a8f16cb73d7300de Author: Alan Garny '' Date: Thu Aug 11 18:50:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit dca27e72a296b53e4bf844a67f9214cf5580c6f9 Author: David Brooks '' Date: Mon Aug 8 15:54:30 2016 +0100 Show the files that will be committed '(#1061)' commit 8e02deff6be56a701d71c3e122f99cb5c0eeba27 Author: David Brooks '' Date: Mon Aug 8 15:52:12 2016 +0100 Tidy up code '(#969)' Seperate out opening a 'workspace'\''s' git repository and getting the 'repository'\''s' status. commit da1ff66fbf92116a66b986b15882ec190bab0f15 Author: David Brooks '' Date: Mon Aug 8 13:40:04 2016 +0100 Periodically refresh the status of a workspace '(#1056)' We also only have one workspace open at a time, the '"current"' one. commit 204ab1ba1166103976164452153065a73f158380 Author: David Brooks '' Date: Mon Aug 8 13:29:16 2016 +0100 Tidy up code '(#969)' commit a4184299ec5c51c69d19b8ab25da2770563b993a Author: David Brooks '' Date: Mon Aug 8 13:24:35 2016 +0100 Simplify code to '"Show' containing 'folder"' '(#1060)' Update '(unfinished)' translations. commit f88bd75930e242b148cef16798f7a4f1b1d3c697 Author: David Brooks '' Date: Fri Aug 5 18:52:39 2016 +0100 Simplify code to '"Show' containing 'folder"' '(#1060)' commit a1da1529d634515010608a73b24d3d69dacbcf92 Author: David Brooks '' Date: Fri Aug 5 18:40:39 2016 +0100 'Don'\''t' crash after cloning a workspace '(#1055).' Open a new workspace after cloning 'it;' check for a null root node when generating HTML. commit 9a701f3ad058df534835774912c53f2419ba171e Author: David Brooks '' Date: Wed Aug 3 16:12:01 2016 +0100 Export '`PmrWorkspaceFileNode`' for 'Windows'\''' DLLs '(#969)' commit e7ce70af0767666204e62be69ada29b0234a0f50 Author: David Brooks '' Date: Wed Aug 3 15:34:24 2016 +0100 Show deleted files in workspace tree '(#969)' We use the file/directory tree returned by '`git_status_list_new()`' using appropriate options to get all files in the repository. commit 8c10fb02f48ce8b4ed288f21f3762017fa0b363c Author: David Brooks '' Date: Tue Aug 2 11:44:51 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 3180034cb850567442462228987219bafd039729 Author: Alan Garny '' Date: Mon Aug 1 18:39:23 2016 +0200 MathML viewer: fixed a small problem with some numbers being rendered with fewer decimal digits than they actually have '(closes' '#1054).' commit 96c10e9f9ea2c203ced1396439dc44261c635dff Author: Alan Garny '' Date: Mon Aug 1 17:33:34 2016 +0200 Text-based editing views: fixed a small problem with no line/column information being shown anymore '(closes' '#1053).' commit 9f80b61fdb615afe7f0fbf9140213dee823447fc Author: Alan Garny '' Date: Mon Aug 1 16:52:05 2016 +0200 Text-based editing views: fixed a small problem with no line/column information being shown anymore '(closes' '#1053).' commit 6d021fad4d1890b86fc9cfe9b13c1f1ada83bbdc Author: Alan Garny '' Date: Mon Aug 1 12:09:41 2016 +0200 Raw CellML and CellML Text views: slight improvement to our use of the MathML viewer '[ci' 'skip].' commit 38d450c377df620c12ce1ed9dc45acddfea557a5 Author: Alan Garny '' Date: Sat Jul 30 18:26:07 2016 +0200 Reverting to a snapshot version of OpenCOR '[ci' 'skip].' commit 7895d311c25d83dd82f0767816ae62aec9e274ad Author: Alan Garny '' Date: Sat Jul 30 11:32:33 2016 +0200 Some minor refactoring. Overloaded our 'Core::[read|write]FileContentsFrom[File|Url]()' functions so that we can now use them with either a QByteArray or a QString. Also changed the signature of our 'Core::validXml(),' 'FileManager::isDifferent(),' 'FileManager::newFile(),' 'FileManager::create()' and 'File::isDifferent()' functions so that they now also uses QByteArray rather than QString. Finally, replaced QByteArray with QString whenever possible. commit a18f80d42b94a68e6b425ea17967dd3e6d972af6 Author: Alan Garny '' Date: Fri Jul 29 14:32:35 2016 +0200 General: fixed a small problem with the reloading of a modified file potentially resulting in an empty view '(closes' '#1052).' commit 3afbc0859ed26399c4058c491a5479e1f12b723b Merge: ea00b2b01 c2e46710a Author: Alan Garny '' Date: Fri Jul 29 13:15:02 2016 +0200 Merge pull request '#1051' from opencor/issue1050 commit c2e46710ad08e2e784b439cfbd0fb64bef0a4334 Author: Alan Garny '' Date: Fri Jul 29 12:38:05 2016 +0200 Some minor cleaning up. commit d7815cc89972ca928ade75bca0c586d01e7bbce1 Author: Alan Garny '' Date: Fri Jul 29 11:55:56 2016 +0200 Some minor cleaning up. commit 217c8f69fba517da263a84b1ed87c8f0ef8b3041 Author: Alan Garny '' Date: Fri Jul 29 11:43:23 2016 +0200 Editing views: some work on fixing a small problem with the incorrect tracking of the modified state of a file '(#1050).' commit 7e1c2d57a9db6b729c7e518adc66bc4fa7f1a829 Author: Alan Garny '' Date: Fri Jul 29 11:21:30 2016 +0200 Editing views: some work on fixing a small problem with the incorrect tracking of the modified state of a file '(#1050).' commit ea00b2b01fc56a578272242ef566dcfcc27cbc58 Author: Alan Garny '' Date: Thu Jul 28 18:47:03 2016 +0200 Slight update to our downloads page '[ci' 'skip].' I had completed forgot to copy the 2016-07-26 log to the previous snapshots page. commit 26b0f87ee1f362a2e581f83da11cac2b856e809b Author: Alan Garny '' Date: Thu Jul 28 16:30:30 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d5aba45cfde4f0148d91920c80f84a50c14c63c Author: Alan Garny '' Date: Thu Jul 28 15:45:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 47bbefcdf22babe1c91ad97a24cee87005a957f1 Author: Alan Garny '' Date: Thu Jul 28 15:39:01 2016 +0200 Central widget: slight improvements to the way we handle changes to a file '[ci' 'skip].' commit b915d1ba3372f201a1db4a0100e466969ba6286b Author: Alan Garny '' Date: Thu Jul 28 13:19:32 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e2950f4aab3338b7860eba7b292eeecbd90794e8 Author: Alan Garny '' Date: Thu Jul 28 11:27:33 2016 +0200 Revert '"CellML' Text view: fixed a small problem resulting in the incorrect tracking of the modified state of a file '(closes' '#1049)."' This reverts commit 485e7ab2dcfb31505459505943aa83438e4066ae. Indeed, this is the wrong way to address the problem, not to mention that the problem is actually more general '(see' issue '#1050).' commit 485e7ab2dcfb31505459505943aa83438e4066ae Author: Alan Garny '' Date: Wed Jul 27 18:08:15 2016 +0200 CellML Text view: fixed a small problem resulting in the incorrect tracking of the modified state of a file '(closes' '#1049).' commit 54cbc3cee74629b189de5d57c1133eddeb55a2a6 Author: Alan Garny '' Date: Wed Jul 27 17:29:55 2016 +0200 Slight improvement for issue '#1048' '(file' manager: only check files when OpenCOR is really 'active).' Also fixed a small problem with our Core general tests. commit 2558bb966ac031cb166a8056a47a69e03df63ade Author: Alan Garny '' Date: Wed Jul 27 16:48:11 2016 +0200 File manager: only check files when OpenCOR is really active '(closes' '#1048).' commit af83281cee4a352975413aab7053a665003af07e Author: Alan Garny '' Date: Wed Jul 27 14:35:23 2016 +0200 Starting to get ready for version 0.5 '[ci' 'skip].' commit 6a1d2aa9ab6ee0df392891f14a22bd21698e99a9 Author: Alan Garny '' Date: Tue Jul 26 14:58:46 2016 +0200 New snapshot. commit ae954c2a51d567acd94f4fc21f26e16149342fe3 Author: Alan Garny '' Date: Tue Jul 26 14:57:33 2016 +0200 CMake: make sure that we can properly find NSIS '(when' 'available).' Indeed, up to CMake 3.5.x, CMake was only avaialble as a 32-bit application on Windows. However, starting with CMake 3.6.x, CMake is now available both as a 32-bit and 64-bit application. Now, depending on the version you use, the value of '`$ENV{PROGRAMFILES}`' will return either '`C:\Program' Files '(x86)`' '(when' using the 32-bit version of 'CMake)' or '`C:\Program' 'Files`' '(when' using the 64-bit version of 'CMake),' while '`$ENV{PROGRAMW6432}`' will always return '`C:\Program' 'Files`' in both cases. There is therefore something funny going on with the 64-bit version of CMake. So, to be on the safe side, we ''\''manually'\''' look for the possible location of NSIS. commit 47eeac9e197a774ea850d9dc678011cf4bcd4d2f Author: Alan Garny '' Date: Tue Jul 26 14:30:03 2016 +0200 Revert '"New' 'snapshot."' This reverts commit da8b58c169edfcbb74e0126f0790d30551ec58c7. commit da8b58c169edfcbb74e0126f0790d30551ec58c7 Author: Alan Garny '' Date: Tue Jul 26 11:06:07 2016 +0200 New snapshot. commit 8c0bee9783c6915247eba08617fe84c39f9478db Merge: 178508343 1f9247a9c Author: Alan Garny '' Date: Mon Jul 25 18:46:44 2016 +0200 BioSignalML: made the code and GUI look more like the rest of OpenCOR '(closes' '#856).' commit 1785083435291d55b4a8f26fa77988279167f14e Author: Alan Garny '' Date: Mon Jul 25 18:02:37 2016 +0200 Slight updates to our what is new page '[ci' 'skip].' commit ed3b7e3534aba3fdd66d0864dace23127cb99a8e Author: Alan Garny '' Date: Mon Jul 25 18:02:04 2016 +0200 Slight updates to our what is new and downloads pages '[ci' 'skip].' commit 1f9247a9c7311747b3c945749fc4ecd5f44a0a30 Author: Alan Garny '' Date: Mon Jul 25 17:34:06 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit 1a0ea68c497e6f0c5bdba1c48f01520791fe04d1 Author: Alan Garny '' Date: Mon Jul 25 17:07:34 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit 3800c80742088746b11e42c2852522dc75ef03cb Author: Alan Garny '' Date: Mon Jul 25 16:58:05 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit a2d65b71eb71c49b3336856e515a22feb21b8360 Author: Alan Garny '' Date: Mon Jul 25 16:46:01 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit 759f2a9bc05cbeece7517bfab599d17ad2d4f848 Author: Alan Garny '' Date: Mon Jul 25 16:12:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit d8e7817609bce1a6c22e1a4bfea25782075319ef Author: Alan Garny '' Date: Mon Jul 25 14:38:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit c21c2137eddfce1c618a88b7b56ca23650bacd01 Merge: f3e361ba7 8aa9077f9 Author: Alan Garny '' Date: Mon Jul 25 14:37:05 2016 +0200 Merge branch ''\''master'\''' into issue856. commit 8aa9077f98b8cf7024a027104e0c409e201c1be4 Author: Alan Garny '' Date: Mon Jul 25 14:36:54 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f3e361ba78b7ecbcbd55cac7d294281d284c18ba Merge: 9f62ac730 318a33516 Author: Alan Garny '' Date: Mon Jul 25 13:28:42 2016 +0200 Merge branch ''\''master'\''' into issue856. commit 318a33516d849d64a49e3e0bff69ee995b5df8b0 Author: Alan Garny '' Date: Mon Jul 25 13:28:31 2016 +0200 Some minor cleaning up. commit 9f62ac730b62935b52095235bb6573f6bbebf13c Author: Alan Garny '' Date: Mon Jul 25 12:57:28 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856).' commit 3fdc2256b530ee408d45d80db6d8c3d411649349 Author: Alan Garny '' Date: Mon Jul 25 11:01:05 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 67a9bfddd9e061ade7a3499c46846298f6b8b20f Author: Alan Garny '' Date: Mon Jul 25 10:27:36 2016 +0200 CSV data store: ask for the data to be exported and then for the file name '(rather' than the other way 'round).' commit 485297f7ca790d005c39b813fbefb5e1f7cda0d0 Author: Alan Garny '' Date: Sun Jul 24 14:30:16 2016 +0200 Removed our 'qSameStringLists()' method since QTBUG-47948 has now been fixed '(see' https://bugreports.qt.io/browse/QTBUG-47948 and 'https://codereview.qt-project.org/#/c/153440/).' commit b66ed336d692047ae7b5a701d6b1b23a28ce16f0 Author: Alan Garny '' Date: Sun Jul 24 14:15:21 2016 +0200 Some cleaning up to respect our coding style. commit 8f14aaa044fb185f3150b07e17098bf6da3b1027 Author: Alan Garny '' Date: Sun Jul 24 11:22:10 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 8e0082117228da5508cd37c747178cc8d5407945 Merge: bc337e26a e0dc083bc Author: Alan Garny '' Date: Sat Jul 23 12:18:26 2016 +0200 Data store exporters: now allow the selection of model parameters '(closes' '#1008).' commit e0dc083bcbbb342899046c93baa6d86b0d0dfe79 Author: Alan Garny '' Date: Sat Jul 23 11:53:34 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 5b753141518b070cb07ba100895eabe606fe142a Author: Alan Garny '' Date: Sat Jul 23 11:04:08 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 54d2ab5e788a756725f1d0432f79c666347abb29 Author: Alan Garny '' Date: Sat Jul 23 10:53:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f551f30eefd84f6698f2b29eaad5a306680dcab0 Author: Alan Garny '' Date: Fri Jul 22 18:35:42 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit c61769fc97fbe946e2a679ee14a9daa70545db04 Author: Alan Garny '' Date: Fri Jul 22 18:29:10 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 73d6796cca8ad7c482110d9a21162561e3e8e6b4 Author: Alan Garny '' Date: Fri Jul 22 18:26:02 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 5058b144845f7544297681bf61c1d28aa446a0ec Author: Alan Garny '' Date: Fri Jul 22 18:10:52 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 6979781256aaac63938772c0ab1871adff5f9ba9 Author: Alan Garny '' Date: Fri Jul 22 18:04:32 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit e58b37db7f0eb4bf20c67c90a33138cd8fc5b63b Author: Alan Garny '' Date: Fri Jul 22 18:03:40 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit ba6b3856ba64bf0548056e2bfe4131973a4b7c48 Author: Alan Garny '' Date: Fri Jul 22 18:01:31 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 8cf7df7518c5e445de069cd3e47eaf3a6c1eda3c Author: Alan Garny '' Date: Fri Jul 22 17:51:52 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 273ef4cb45b0e3afd42f01f2380b8ce93536f47c Author: Alan Garny '' Date: Fri Jul 22 17:12:23 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 66d188b5db2a5e9509b6cec55af119a771988c66 Merge: ae8fbbd06 bc337e26a Author: Alan Garny '' Date: Fri Jul 22 16:51:27 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit bc337e26a91bf49bfcf5014e138c60e75ad823b4 Author: Alan Garny '' Date: Fri Jul 22 16:50:25 2016 +0200 Single Cell view: fixed a small problem with OpenCOR crashing upon closing '(closes' '#1044).' commit 6bf3c56f79c3b4e0fa1124e81c4e904d29567f99 Author: Alan Garny '' Date: Fri Jul 22 15:26:15 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit ae8fbbd06ac8eb3fb677c9873e661d405dde954a Author: Alan Garny '' Date: Fri Jul 22 15:06:28 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 75a6413c430ca7ffcef424f15b2a7d7618989abf Author: Alan Garny '' Date: Fri Jul 22 14:52:28 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 0b28a9e767e28858901ae79934601ea03d696139 Author: Alan Garny '' Date: Fri Jul 22 14:01:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4307ec654526071b2bb86a3bb60637df82807ba3 Author: Alan Garny '' Date: Fri Jul 22 14:00:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 6967e6cb246a651723248648162449e9f28f8878 Merge: e5bad1f15 a8f489f22 Author: Alan Garny '' Date: Fri Jul 22 13:47:41 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit a8f489f228b9fe1e072dab5c4e2b340e1896cdd7 Author: Alan Garny '' Date: Fri Jul 22 13:45:04 2016 +0200 Some minor cleaning up. commit e5bad1f158157eb2a93517651d8a1536a576163c Author: Alan Garny '' Date: Fri Jul 22 13:32:25 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 67fd8278b3d4dbc5203061df73701602d2e78295 Merge: 650a6e756 5bb9f00cb Author: Alan Garny '' Date: Fri Jul 22 13:26:03 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit 5bb9f00cb07245a199be711d3b8a27b20ac85c70 Author: Alan Garny '' Date: Fri Jul 22 13:25:22 2016 +0200 Some minor cleaning up. commit b1e47521359c8acef5cab42af6e4b0767568b542 Author: Alan Garny '' Date: Fri Jul 22 13:25:03 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 73ce0212b17cf37f90b7b2c7abd3dee1c8f90520 Author: Alan Garny '' Date: Fri Jul 22 11:23:31 2016 +0200 Some minor refactoring '[ci' 'skip].' commit 57fd5b40212c993795ec88106a317bacba2a2cf5 Author: Alan Garny '' Date: Fri Jul 22 11:04:59 2016 +0200 Some minor refactoring '[ci' 'skip].' Renamed '`GraphPanelWidgetCustomAxesWindow`' to '`GraphPanelWidgetCustomAxesDialog`.' commit 296b0470892b18d9a3692de507ccbea3bbabf480 Author: Alan Garny '' Date: Fri Jul 22 11:01:24 2016 +0200 Some minor refactoring '[ci' 'skip].' Renamed '`PreferencesWindow' '`' to '`PreferencesDialog' '`.' commit 930704ab3256d5c69df4edbccb8023f1dab263bb Author: Alan Garny '' Date: Fri Jul 22 10:58:01 2016 +0200 Some minor refactoring '[ci' 'skip].' commit a2a547310e6959d8452786369b7e604fe01f8449 Author: Alan Garny '' Date: Fri Jul 22 10:57:24 2016 +0200 Some minor refactoring '[ci' 'skip].' Renamed '`PluginsWindow`' to '`PluginsDialog`.' commit 8acf6219135645980658f0c5d66398f778ba510b Author: Alan Garny '' Date: Fri Jul 22 10:50:55 2016 +0200 Some minor refactoring '[ci' 'skip].' Renamed '`CheckForUpdatesWindow`' to '`CheckForUpdatesDialog`.' commit 650a6e756f8dddc4cd3c4b21a77181142c711e04 Author: Alan Garny '' Date: Thu Jul 21 18:14:03 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit a1d82ba6b54523fa15f497dc793ad948bd6f3709 Author: Alan Garny '' Date: Thu Jul 21 18:00:34 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 3da6f94bb674e5c6507d0b7dd92bd7a4774226a1 Author: Alan Garny '' Date: Thu Jul 21 16:46:18 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 2e76d725e6b0b7f3292001bb0b8976dcb47e1305 Author: Alan Garny '' Date: Thu Jul 21 16:38:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit e8632db5a2bd5e5937797484a82d8978fbffec73 Author: Alan Garny '' Date: Thu Jul 21 16:29:32 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 18af23847ccc465c88fb52972d442589ddc58b16 Author: Alan Garny '' Date: Thu Jul 21 16:17:40 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit f6ff90f2cda533f4f5e15f21d3325c6a8fbc48d5 Author: Alan Garny '' Date: Thu Jul 21 15:30:07 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit a120ef0c27dc55f4774e2c9aafb769b645e9faa6 Merge: e36c7d03f a72c0def5 Author: Alan Garny '' Date: Thu Jul 21 15:21:01 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit a72c0def57f0cf2961bc3126f432971104e8fdc4 Author: Alan Garny '' Date: Thu Jul 21 15:20:34 2016 +0200 Single Cell view: some slight improvements to the populating of the Parameters panel '[ci' 'skip].' commit e36c7d03fd8bf028e537fd0975acc380c73d6ac3 Author: Alan Garny '' Date: Thu Jul 21 13:41:27 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit d4ac47c9f2d2f04bef2e06309a8e98ba15678753 Author: Alan Garny '' Date: Thu Jul 21 13:40:13 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 2ccd6644af6f0877463ad18355fa86d6aaa9ceab Merge: b6627fc2c 69979b5df Author: Alan Garny '' Date: Thu Jul 21 13:33:16 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit 69979b5df8f970d5aa5297f9b5047a310e508e08 Author: Alan Garny '' Date: Thu Jul 21 13:32:41 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit b6627fc2c1908c01c807b0b7e8bcd9ef63ee0081 Author: Alan Garny '' Date: Thu Jul 21 11:42:14 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 44213fa27604a63632680ddfeae99ec2f004999d Author: Alan Garny '' Date: Thu Jul 21 10:56:38 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit e0bc9e49ecb6b99592858ee0b8e19ade99d73bbf Merge: f2b9330c0 5191e58c4 Author: Alan Garny '' Date: Wed Jul 20 14:48:31 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit 5191e58c44cc589725db4c9cdcc9d6c4efef0592 Author: Alan Garny '' Date: Wed Jul 20 14:47:35 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b9e0c961e07e5a6d7c4e0b41eb57f386da0c42af Author: David Brooks '' Date: Wed Jul 20 13:37:01 2016 +0100 Some minor cleaning up. Replaced '`Q_SIGNALS`' and '`Q_SLOTS`' with '`signals`' and '`slots`,' respectively. commit 7ebd66011386055099a4c89fbc6123a0c56ad869 Merge: 2d9bf3ab9 82204a869 Author: David Brooks '' Date: Wed Jul 20 13:31:45 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit f2b9330c03765a82fe9df8fc8cd8073cee9eb3c3 Merge: 612f95b7a 82204a869 Author: Alan Garny '' Date: Wed Jul 20 14:29:37 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit 82204a86962a6e1e9b1c5a10bda6c24ae875cfdd Merge: 97cee0f88 b585935ac Author: David Brooks '' Date: Wed Jul 20 13:16:26 2016 +0100 Merge pull request '#1043' from dbrnz/vs2015bsml Upgrade BioSignalML libraries for Windows to VS2015 '(#1042)' commit b585935ac6d81cfd6dcf8210c3c72518ae4c27f0 Author: David Brooks '' Date: Wed Jul 20 12:58:52 2016 +0100 Upgrade BioSignalML libraries for Windows to VS2015 '(#1042)' commit 612f95b7a9691c4f84ce26a975380d43479a4ec7 Merge: 884dfd59a 97cee0f88 Author: Alan Garny '' Date: Wed Jul 20 11:39:13 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit 97cee0f88031d1b8b7edd0448ca1c7ffee020317 Author: Alan Garny '' Date: Wed Jul 20 11:37:48 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 884dfd59a6f197ae1dc5c220ad29e29b60edf316 Merge: 8ffe8806e e16b32ecb Author: Alan Garny '' Date: Tue Jul 19 18:45:05 2016 +0200 Merge branch ''\''master'\''' into issue1008. commit e16b32ecbe8fa363fd38332af8ec8ea862faa553 Author: Alan Garny '' Date: Tue Jul 19 18:35:02 2016 +0200 Some minor cleaning up. Replaced '`Q_SIGNALS`' and '`Q_SLOTS`' with '`signals`' and '`slots`,' respectively. commit 8ffe8806e56e3685c2b8222f4c27c2ec9d544cb6 Author: Alan Garny '' Date: Tue Jul 19 18:04:20 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit e47cf783388458d7a32410314805fa220c24fc40 Author: Alan Garny '' Date: Tue Jul 19 17:54:24 2016 +0200 Data store exporters: some work on allowing the selection of model parameters '(#1008).' commit 3eb718ee36bf1d03e611e71c470431cfd02e8fe7 Author: Alan Garny '' Date: Tue Jul 19 15:49:59 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 3b2fdded09373e7147f5455f4b4fd6cbf29607a9 Author: Alan Garny '' Date: Tue Jul 19 15:45:17 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 29a4d697c5a171f43a80b0ff6b00dc9380a216af Author: Alan Garny '' Date: Tue Jul 19 15:43:05 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit b2da5727f36d3d60fcfab2704e9d5efd49601a8a Author: Alan Garny '' Date: Tue Jul 19 15:38:48 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 37e2e878321bc64eb14da0057fa1eada1e3bc4b4 Author: Alan Garny '' Date: Tue Jul 19 15:38:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 8004a9a273de9158574044a43d087bafe860658c Author: Alan Garny '' Date: Tue Jul 19 15:12:03 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 7f2e280edfd0d4c6c422df623f796e71da260885 Author: Alan Garny '' Date: Tue Jul 19 15:06:36 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 75d0e97072620db1f30c6cb14f00be399ec794dc Author: Alan Garny '' Date: Tue Jul 19 15:01:25 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 8b755b52e9d8946adf667f4a2dfcf4c248123999 Author: Alan Garny '' Date: Tue Jul 19 14:43:30 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 3feca5f8d57354591348d25c6cc37030a1dbd258 Author: Alan Garny '' Date: Tue Jul 19 14:32:56 2016 +0200 BioSignalML: make the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 87f85e39b4be970c5781274f6c64834439367729 Author: Alan Garny '' Date: Tue Jul 19 14:29:39 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 367e035218f66429d9a5f051c5e99924d4ee0b15 Author: Alan Garny '' Date: Tue Jul 19 13:21:42 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b562cfa38b01fa09d1e277b2316c31eac574085c Author: Alan Garny '' Date: Mon Jul 18 17:08:55 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 2d4fd3d8ef182145dcdbd1ba96ef29b150e221c8 Author: Alan Garny '' Date: Mon Jul 18 17:07:55 2016 +0200 jQuery: upgraded to version 3.1.0 '(closes' '#1041).' commit 85ac9a7d445ad6e23b90c84c864f55fe74131cfa Author: Alan Garny '' Date: Mon Jul 18 15:30:04 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 63205f4820b1f178e40245a872320fe00e356170 Author: Alan Garny '' Date: Mon Jul 18 15:06:10 2016 +0200 Text-based editing views: fixed a small problem with switching editing views for the same file resulting in file changes '(and' other 'things)' not being tracked anymore '(closes' '#1040).' commit e7d5bd99b15daa04141ad8c6700880190af3a5b0 Author: Alan Garny '' Date: Mon Jul 18 12:55:21 2016 +0200 General: slight improvement to the handling of new files '(related' to issue '#1020).' commit fa77232a0f44e90ed8e204d8483bdadcc656a5fb Author: Alan Garny '' Date: Sun Jul 17 17:54:31 2016 +0200 Reverting commit 9c957bb. Commit 9c957bb was already reverting commit de2db01, but the problem $'wasn\342\200\231t' that we needed to export LD_LIBRARY_PATH and PATH, but the fact that we needed to ship the standard C++ library used to build Qt WebKit '(see' commit '2aa154e).' commit 2aa154ea8e77fb2d9f75dd5c5de200c0a06f5406 Author: Alan Garny '' Date: Sat Jul 16 23:12:52 2016 +0200 Linux: ship the standard C++ library used to build Qt WebKit. Indeed, to address issue '#1037,' we had to upgrade to GCC/G++ 4.9+, which means using a different version of libstdc++ than the one shipped with Ubuntu 14.04 LTS '(while' it is available on Ubuntu 16.04 'LTS).' So, we need to ship it with OpenCOR in case the version of Ubuntu used by someone is not recent enough. commit fc972845447eb427d1d26fff335264df3a48dcfe Author: Alan Garny '' Date: Sat Jul 16 23:02:52 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 6711c5dc1f2e4155e1bb072b633ce521cf1e5876 Author: Alan Garny '' Date: Sat Jul 16 09:54:30 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9c957bb9684324b0f5f192f60785e59647021fd5 Author: Alan Garny '' Date: Fri Jul 15 14:06:54 2016 +0200 Reverting commit de2db01. In the end, to export PKG_CONFIG_PATH only is not enough. Indeed, although it allowed OpenCOR to work on Ubuntu 16.04 LTS, it $'wasn\342\200\231t' working on Ubuntu 14.04 LTS anymore '(!!).' commit 394cdbfcc43a296a4be9d310f9cb2a90a8c38103 Author: Alan Garny '' Date: Fri Jul 15 09:30:15 2016 +0200 Revert '"Third-party' plugins: they are plugins, so we 'don'\''t' need the .lib files on Windows '(unlike' ''\''proper\' shared 'libraries)."' This reverts commit 4e9097f80af27431e6803d9ab665ab93a68659a6. Indeed, we actually need them in $'fact\342\200\246' otherwise, we $'can\342\200\231t' build plugins that depend on those other plugins. commit 4e9097f80af27431e6803d9ab665ab93a68659a6 Author: Alan Garny '' Date: Thu Jul 14 23:24:03 2016 +0200 Third-party plugins: they are plugins, so we 'don'\''t' need the .lib files on Windows '(unlike' ''\''proper\' shared 'libraries).' commit fd22cf2b977103bef6b986f483a9749fc90ef382 Merge: de2db0146 3cf119627 Author: Alan Garny '' Date: Thu Jul 14 22:23:53 2016 +0200 LLVM: upgraded to version 3.8.1 '(closes' '#1036).' commit 3cf1196278876a056bd64d2f5ad5594cc9e74afc Author: Alan Garny '' Date: Thu Jul 14 21:36:47 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit 26a81b364cbfb6d3b5ab88b6e9e0209ee011c2a7 Author: Alan Garny '' Date: Thu Jul 14 21:30:27 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit 840f22213ed4dff950e9dae80fdcd2e7064ed348 Author: Alan Garny '' Date: Thu Jul 14 15:28:07 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit e3477a6d5ac8c648f39d8c58ff2b91d4e79b2e9f Merge: c1724c398 de2db0146 Author: Alan Garny '' Date: Thu Jul 14 14:21:39 2016 +0200 Merge branch ''\''master'\''' into issue1036. commit de2db0146011379fc7ef3c70f06fce596a295244 Author: Alan Garny '' Date: Thu Jul 14 14:03:36 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit c1724c3980497724c3ec9d5146c6e8839d695eb7 Author: Alan Garny '' Date: Wed Jul 13 15:05:43 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit e5dc6f963bbfe0d04276eaed9b4275c6f7801c35 Merge: f7efa5da1 a90f7a03e Author: Alan Garny '' Date: Wed Jul 13 15:04:16 2016 +0200 Merge branch ''\''master'\''' into issue1036. commit a90f7a03e9969ab8d90434157035406aa2c41d50 Merge: 940d9d5da ee415104d Author: Alan Garny '' Date: Wed Jul 13 15:00:11 2016 +0200 Qt WebKit: now use the same version of ICU as Qt itself on Linux '(closes' '#1037).' Note: we are still waiting for Travis CI to run a debug version ee41510 on OS X, but we know it works '(since' this PR is all about 'Linux),' so just going ahead... commit 940d9d5daf04015ab90907cae76903f234a598f3 Author: Alan Garny '' Date: Wed Jul 13 14:58:01 2016 +0200 Revert '"Slight' update to our downloads page '[ci' 'skip]."' This reverts commit 733510b002f843cbb81ca29f02be6266154d83d1. commit 733510b002f843cbb81ca29f02be6266154d83d1 Author: Alan Garny '' Date: Wed Jul 13 13:40:56 2016 +0200 Slight update to our downloads page '[ci' 'skip].' commit ee415104d31cbb24b855212bae60854999ad9598 Author: Alan Garny '' Date: Wed Jul 13 13:28:54 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux '(#1037).' commit 3e089c3eed015fb4c5a2bf66574f8f9b0f2238ed Author: Alan Garny '' Date: Wed Jul 13 13:06:10 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux '(#1037).' commit 097a3da242330a8da5994405456e2a6b5cf0ba3f Author: Alan Garny '' Date: Tue Jul 12 20:26:46 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux '(#1037).' commit cd0c4a5f216413790540c9670bfede030b034e0c Author: Alan Garny '' Date: Tue Jul 12 20:10:21 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux '(#1037).' commit 908f8d0f5975067c7f1c943b1dac8e3a8ee6b1b7 Merge: e9bd81704 5d3f0119c Author: Alan Garny '' Date: Tue Jul 12 19:54:43 2016 +0200 Merge branch ''\''master'\''' into issue1037. commit f7efa5da1740a4d2bf0cfaa7447ca8343a4bcb9f Merge: ae9bf8db6 5d3f0119c Author: Alan Garny '' Date: Tue Jul 12 19:54:27 2016 +0200 Merge branch ''\''master'\''' into issue1036. commit 5d3f0119cee5fe910d78ae8ae9b11119189faebb Author: Alan Garny '' Date: Tue Jul 12 19:54:13 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e9bd81704a166fb865383d5e793c65000ff9717a Author: Alan Garny '' Date: Tue Jul 12 19:53:33 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt itself on Linux '(#1037).' commit fb7ffe9510da55f879f79902166402bbdb22dbe2 Author: Alan Garny '' Date: Tue Jul 12 19:04:53 2016 +0200 Qt WebKit: some work on using the same version of ICU as Qt on Linux '(#1037).' commit ae9bf8db677229f8be54f3b973d31bc637a2f06f Author: Alan Garny '' Date: Tue Jul 12 18:56:55 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit bb51ba002e44bc580763c92056426656e0538571 Author: Alan Garny '' Date: Tue Jul 12 18:52:38 2016 +0200 LLVM: some work on upgrading to version 3.8.1 '(#1036).' commit eefa51d87cc4d3d2bef51c53009ca956ba7f979c Author: Alan Garny '' Date: Tue Jul 12 10:26:21 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 77babe5314fbebab9ffe8aca87095a8ab1739079 Author: Alan Garny '' Date: Mon Jul 11 19:37:00 2016 +0200 Oops, a couple of oversights while working on issue '#1033.' commit 171f560c64ab88194122885819c09e9bfa7c409d Author: Alan Garny '' Date: Mon Jul 11 19:27:19 2016 +0200 CellML Annotation view: makes sure that our view is properly translated '[ci' 'skip].' commit ebdea15c48fbbc7c62122ca01d7660a7e0998939 Author: Alan Garny '' Date: Mon Jul 11 18:58:02 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4d346470bf43568fbe0a73a0dba7d0d3a6fccbdd Merge: 50da0044d dbaab6bdb Author: Alan Garny '' Date: Mon Jul 11 18:36:34 2016 +0200 CellML Annotation and Single Cell views: improved the switching from one file to another with the mouse over a button-like widget and the status bar visible '(closes' '#1033).' commit dbaab6bdb86970fa8d07cafa860176495a236454 Author: Alan Garny '' Date: Mon Jul 11 18:09:56 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible '(#1033).' commit 98a94aed213d033db05e0280e22a0d6c6faf02e6 Author: Alan Garny '' Date: Mon Jul 11 17:58:11 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible '(#1033).' commit ab610dca3fa833d8034d78965954988b9f2ce274 Author: Alan Garny '' Date: Mon Jul 11 17:51:38 2016 +0200 CellML Annotation and Single Cell views: some work towards improving the switching from one file to another with the mouse over a button-like widget and the status bar visible '(#1033).' commit 50da0044dd7b316da31aad9848b4a417c60e3a17 Author: Alan Garny '' Date: Mon Jul 11 17:43:50 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 17308e21baa8850ea950e03f0a626a33b559b954 Author: Alan Garny '' Date: Mon Jul 11 17:34:27 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b2fe236a50f4c5cbe5135852ef72150879b2aca0 Author: Alan Garny '' Date: Mon Jul 11 17:27:43 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 45d4147364833ad7fdb381ca501d420f67023b06 Author: Alan Garny '' Date: Mon Jul 11 17:22:46 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2aab1e26ec0e5266edfab95b915bbd5bd431147f Author: Alan Garny '' Date: Mon Jul 11 16:27:56 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2d9bf3ab9253b70a2039b71b4c54f349ee33c2b2 Merge: 29511a703 4afda033c Author: David Brooks '' Date: Thu Jul 7 23:07:18 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 29511a703eeaab1b8bafd1d82c9e487f12211046 Author: David Brooks '' Date: Thu Jul 7 22:48:02 2016 +0100 Users 'couldn'\''t' log off PMR... commit d4119b19e016ab5d5dd9592c6aa70af83b905d72 Author: David Brooks '' Date: Thu Jul 7 22:40:44 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' 'Don'\''t' create a new repository unless we have a directory in which to clone it. commit e870f04fa1a931b13d33376cb11ae55ae364c964 Author: David Brooks '' Date: Thu Jul 7 22:39:53 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' A newly created workspace is an empty git repository so allow for this with getting status, doing the initial commit, and when pushing. commit 71e3a6fbd225512637e3f7c07b55181f8b752536 Author: David Brooks '' Date: Thu Jul 7 22:05:12 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Show a ''\''?'\''' on a 'workspace'\''s' header row if there are unstaged files. commit 4afda033c67e84011a553eb8de50ed9078af8109 Author: Alan Garny '' Date: Wed Jul 6 23:59:03 2016 +0200 PMR window: file exposures now include SED-ML files, if any '(closes' '#1032).' commit 4302b07fe8b45e8644ede98f5f05485a7aed7b0e Merge: 517078b87 efc273c64 Author: David Brooks '' Date: Wed Jul 6 12:32:04 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 517078b87a8ff71ff5809202b098c3fd17a40844 Author: David Brooks '' Date: Wed Jul 6 12:20:23 2016 +0100 Code tidy up. commit 3ccda5a7684eb5b6c1321189eab3876baba5ac5f Author: David Brooks '' Date: Wed Jul 6 12:18:30 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Tidy up git 'push;' try setting push options after a clone. commit 8d98c893da8767fa007f23a44a382f8c2ed3a66f Author: David Brooks '' Date: Wed Jul 6 12:16:51 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' A newly cloned workspace 'wasn'\''t' being added to the workspace 'widget'\''s' list of workspaces. commit 75a96c5cce4697feb9374d8072aa24492c537de6 Author: David Brooks '' Date: Wed Jul 6 12:14:25 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Implement git commit for a workspace. commit f70a73529a31fd3218518867c0c9b55397bdb949 Author: David Brooks '' Date: Wed Jul 6 12:09:15 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Tidy up of workspace 'widget'\''s' layout, icons, context menu, and prompts. commit 7636a69cd8f00767ff048a7bc5586bd9bc9a1005 Author: David Brooks '' Date: Wed Jul 6 11:59:52 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Always build entire HTML tree for a workspace and hide unexpanded folders instead of generating HTML as folders are first expanded. commit 3f443a0e93897e28c7a0d802d3952f61a60376a2 Author: David Brooks '' Date: Wed Jul 6 11:52:53 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' A workplace can have both files to commit and require pushing. commit b0f831d5824f0312cde4f2206f078c87b0e41d3c Author: David Brooks '' Date: Wed Jul 6 11:47:33 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Track the git status of a 'workplace'\''s' files. commit efc273c6454c233dbf7bf6dd5117c0f257604810 Author: Alan Garny '' Date: Tue Jul 5 21:01:30 2016 +0200 PMR support: slight improvements to the retrieval of exposure files '[ci' 'skip].' commit a34cce659ee8bf662b0020bae7933d5138f6f960 Author: Alan Garny '' Date: Tue Jul 5 20:01:46 2016 +0200 Single Cell view: the VOI $'isn\342\200\231t' listed in the Parameters 'panel'\''s' popup menu anymore, if it 'isn'\''t' defined in the main CellML file '(closes' '#1030).' commit 91b62b123fdf19a54c3682829a1d954a7949fd9b Author: David Brooks '' Date: Tue Jul 5 14:12:41 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Clicking on folder icons now expands/closes them. commit cdec681169579e63eaf5ef0785e45bd719d3e3ae Author: David Brooks '' Date: Tue Jul 5 13:50:36 2016 +0100 Tweaks to workspace 'widget'\''s' stylesheet. commit f89162851c08dd4763415ceba7d6edc6f7ed360c Author: David Brooks '' Date: Tue Jul 5 13:48:38 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Get git index stage/unstage 'working;' tweaks to error messages and displayed file status. commit 1821e7acab68c9ffd7eb73a63425a23a346f6478 Author: David Brooks '' Date: Tue Jul 5 13:46:31 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Ensure PmrWorkspace signals are always connected to the PmrRepository the workspace is part of. commit ac8eb40eb8e504abe656cf6827c94d36a8ea93d6 Author: David Brooks '' Date: Mon Jul 4 23:33:55 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Tweaks to widget layout. commit 6e11d5cf6a7f5d0f98517a42be79370b95f6bfc3 Author: David Brooks '' Date: Mon Jul 4 23:32:42 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Be consistent with CSS indentation. commit 84c7b75f4658074518e7b6dd132e1052a351fca7 Author: David Brooks '' Date: Mon Jul 4 22:41:16 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Allow files to be staged '(and' 'un-staged)' for committing. commit af56d59c81ebb5021b4faef75a2021dd96c57ef5 Author: David Brooks '' Date: Mon Jul 4 18:08:57 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Add '"Show' in 'Finder/Explorer"' to a 'workspace'\''s' context menu. commit 87f149c3a44acb665be959b66c1303fa5f3642ae Author: David Brooks '' Date: Mon Jul 4 18:07:05 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Tidy up code. commit 45ce9ed2bdcafd642b6acfbe1919e743402c6612 Author: David Brooks '' Date: Mon Jul 4 18:04:40 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Get '`git' 'push`' working. commit d30bddd198515587f92937de2314b92988499101 Merge: bdbb96d9c 2be4d2581 Author: David Brooks '' Date: Sun Jul 3 21:26:06 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit bdbb96d9c10c74f6c896159e9b8d3cb7d00df204 Author: David Brooks '' Date: Sun Jul 3 21:24:49 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Use correct icons... commit 8069c458182d47f95fa15f812502093682f70709 Author: David Brooks '' Date: Sun Jul 3 21:11:14 2016 +0100 Fix typo. commit 9de74ac8465962ba5a2966c802755b1ed366f668 Author: David Brooks '' Date: Sun Jul 3 21:11:04 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Watch for changed files '(from' editor 'saving)' and update git status. commit 73caa3338e887c5e4cb44a93b3cc09cb5c0a4ea3 Author: David Brooks '' Date: Sun Jul 3 21:09:41 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Generalise git code and implement push '(untested).' commit 2be4d2581caa24ff797c0e93f772a2e509b6684f Author: Alan Garny '' Date: Sat Jul 2 22:10:21 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering '(closes' '#1027)' '[ci' 'skip].' commit 901a2226d931989240a9ce33cf634809b3c6c447 Author: Alan Garny '' Date: Sat Jul 2 21:57:54 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering '(closes' '#1027).' commit 2eddbd54398bccd70aed7a4dffe88b88287a2d72 Author: Alan Garny '' Date: Sat Jul 2 19:44:03 2016 +0200 CellML Annotation and Single Cell views: fixed an issue with switching from one file to another with the mouse over a button-like widget and the status bar visible resulting in some bad flickering '(closes' '#1027).' commit 5c56bce3b5ce45a286218bde32329909411b0985 Author: Alan Garny '' Date: Sat Jul 2 13:55:52 2016 +0200 Some minor cleaning up related to our build system '[ci' 'skip].' We dropped our use of SHOW_INFORMATION_MESSAGE. It was only for convenience and, yet, it was too much hassle to get it 100% right. commit c2e9a0f1d7f065fd14a2dad207d740d2d08dccaf Author: Alan Garny '' Date: Sat Jul 2 11:33:49 2016 +0200 Slight refactoring in the Single Cell view code '[ci' 'skip].' commit 5bca57a832aa32fe4fb71f2c6bb11925ebaca9f6 Author: Alan Garny '' Date: Sat Jul 2 01:50:56 2016 +0200 Slight updates to our downloads pages '[ci' 'skip].' commit af66fc4a0c941e21b76dd075692d1e60726ae47f Author: Alan Garny '' Date: Sat Jul 2 01:50:16 2016 +0200 Editor '(find/replace' 'widget):' fixed a problem with the icon for the search options / magnifier looking wrong '(closes' '#1026).' commit 572c7fe1cfd0f0cba67f8183f26d96e91cd5cb8a Author: Alan Garny '' Date: Fri Jul 1 22:28:22 2016 +0200 Some minor cleaning up of our CellML runtime procedure. That cleaning up is a direct consequence of our work on issue '#1025.' commit c895eaf511232baff28ecb656de357718f97cafb Author: Alan Garny '' Date: Fri Jul 1 21:55:01 2016 +0200 Some minor cleaning up of the check for updates menu item '[ci' 'skip].' commit 9e1ad30d1b9417076e8f48463ce531d879e34c8f Author: David Brooks '' Date: Fri Jul 1 17:50:34 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Open files shown in 'workspaces'\''' window when they are clicked on. commit 53a8f6338d965f7a1dc4b11e67a5037aff5dfd7d Merge: c9bc90a40 98fbc0004 Author: David Brooks '' Date: Fri Jul 1 16:35:55 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit c9bc90a40f64e089ae067fa6ec639c3b1c479a17 Author: David Brooks '' Date: Fri Jul 1 16:33:49 2016 +0100 A pointer 'wasn'\''t' initialised... commit 98fbc00048dd9e6ece6c7828585ee2c4ae216027 Author: Alan Garny '' Date: Fri Jul 1 16:31:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0ef205945a4bc9298bd667ba5dcb0e58f24063c9 Author: Alan Garny '' Date: Fri Jul 1 16:27:01 2016 +0200 New snapshots. commit 57572ff7c3c16efb3669f27891ee0e18e82608c5 Author: Alan Garny '' Date: Fri Jul 1 16:23:54 2016 +0200 Fixed a problem with some model parameters being listed in the wrong component '(closes' '#1025).' commit 4df767e22b54ec8352620273a39a41524dfea887 Author: Alan Garny '' Date: Fri Jul 1 16:15:27 2016 +0200 Reverting recent snapshot changes '[ci' 'skip].' We $'didn\342\200\231t' end up publishing the recent $'\342\200\230snapshot\342\200\231,' so reverting the changes so that we can then '(later' 'on)' have a trace of the commit that actually corresponds to our '(future)' snapshot. commit b612174d7a0855472777ebc0dd0daceaba5dc8ea Author: Alan Garny '' Date: Fri Jul 1 16:14:12 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 579a774201b9daa614e547575ba55da8a1d4ba68 Author: Alan Garny '' Date: Fri Jul 1 14:49:46 2016 +0200 Single Cell view: a '(short)' simulation now look smooth again '(closes' '#1024).' Note: because of various changes that we did here and there, there is now no need to call 'QCoreApplication::processEvents()' in 'SingleCellViewInformationParametersWidget::updateParameters().' '(Both' former issues '#656' and '#733' have been checked in that 'regards.)' commit 838e413be45d97e38c95f14cf09e7b1f6708dcaa Author: Alan Garny '' Date: Fri Jul 1 13:05:14 2016 +0200 New snapshots. commit a0fb89b6b6e4c1cb5dc90c4c113f083008b8cf86 Author: Alan Garny '' Date: Fri Jul 1 13:03:55 2016 +0200 Addressed an issue with deploying OpenCOR on Ubuntu 16.04 LTS '[ci' 'skip].' Although we did originally add support for Ubuntu 16.04 LTS '(see' issue '#965),' the fact that we now build Qt WebKit ourselves '(see' issue '#1015)' means that our copy of Qt WebKit '(somehow)' uses the system version of ICU. Since we build Qt WebKit on Ubuntu 14.04 LTS, it means that deployment on that platform was fine, but not on Ubuntu 16.04 LTS '(since' the system version of ICU on that platform is 'different).' So, the solution, here, is $'\342\200\230simply\342\200\231' to deploy both the system version of ICU on which Qt WebKit depends, as well as the Qt version of ICU used by the other Qt libraries we got from Qt itself. commit 1cb80c51c5a3acecf6230e003e4db7f73bb67bb2 Author: Alan Garny '' Date: Fri Jul 1 08:54:19 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit fdef3dba932f5c5e4b3ddef5a4eb3c0ba9af486b Author: Alan Garny '' Date: Thu Jun 30 18:42:24 2016 +0200 Slight improvement to switching files '[ci' 'skip].' The problem reported in issue '#405' is still relevant, but rather than temporarily hiding the status bar, it looks like we can '(now?)' simply temporarily disable updates for our central $'widget.\020\020\020\020' Note, however, until snapshot 2016-05-30 '(built' using Qt '5.4.2),' everything was fine, but then when we switched to Qt 5.5.1 and then Qt 5.6.1 LTS, we have some additional flickering when switching files '(using' Ctrl+Tab 'repeatedly),' and $'it\342\200\231s' not clear yet how to fix $'it\342\200\246' commit 13f20d2795689278c0f91c739adaf2992c4dc1bb Author: Alan Garny '' Date: Thu Jun 30 16:01:02 2016 +0200 New snapshots. commit 6971da35b77fdb0a9e25655d048eccf560ed66da Author: Alan Garny '' Date: Thu Jun 30 15:59:53 2016 +0200 Slight updates to our GitHub ''\''homepage'\''' and proper homepage '[ci' 'skip].' commit e4253a3f5f201afb4b27c97917965ab68896932f Author: Alan Garny '' Date: Thu Jun 30 15:54:30 2016 +0200 Reverting recent snapshot changes '[ci' 'skip].' We $'didn\342\200\231t' end up publishing the recent $'\342\200\230snapshot\342\200\231,' so reverting the changes so that we can then '(later' 'on)' have a trace of the commit that actually corresponds to our '(future)' snapshot. commit 741652e66041d6c72789c7efffd0182628c15cb5 Author: Alan Garny '' Date: Thu Jun 30 15:44:08 2016 +0200 Single Cell view: fixed a small problem with plotting a '(somewhat)' flat graph results in the Y ranges being incorrect '(closes' '#1023).' commit 729a1d2b49ef1cc5ded7b8a7f33073e769f9d05f Author: Alan Garny '' Date: Thu Jun 30 14:50:21 2016 +0200 GUI: improved the switching of files '(closes' '#1022).' commit a1f344beb189c253363c5218800820c3abc6ed77 Author: David Brooks '' Date: Thu Jun 30 11:02:15 2016 +0100 Minor tidy up. commit e488f961b7fd95ff353aa9d71a981481f2bc25bc Merge: 3ab5e52ed 93a3efb13 Author: David Brooks '' Date: Thu Jun 30 10:28:30 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 3ab5e52edaef6192f1e068f6d1ea2b335d3cb88b Author: David Brooks '' Date: Thu Jun 30 10:26:50 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Actually emit an information message... commit a724f47a56feec7efbb65ace92404f9f39d00eba Author: David Brooks '' Date: Thu Jun 30 10:26:17 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Use the workspace manager to ensure we 'don'\''t' re-clone a workspace we are already managing and refactor code for getting an empty directory to clone into. commit 93a3efb137696ca76b320f414b28e896f027cbd3 Author: Alan Garny '' Date: Thu Jun 30 11:13:44 2016 +0200 New snapshots. commit 990384e6bfc567fb7fd930452522806af387d30c Author: Alan Garny '' Date: Thu Jun 30 10:58:44 2016 +0200 CellML Text view: allow comments that contain -- '(double' 'dash)' in them '(closes' '#1019).' commit fce95f87069c5c6fc1b2921fe7e16ca887e3f03d Author: Alan Garny '' Date: Thu Jun 30 10:21:48 2016 +0200 CellML Text view: allow comments that contain -- '(double' 'dash)' in them '(closes' '#1019).' commit 0cb2e04298cdcfb58d93e45fa9f9b53f1f26d59e Author: Alan Garny '' Date: Wed Jun 29 17:06:26 2016 +0200 Fixed a small problem with OpenCOR crashing when trying to validate a malformed CellML file '(closes' '#1018).' commit 82a318285dcecdb39166839ea13ad4d48fd1ac0c Author: Alan Garny '' Date: Wed Jun 29 17:05:25 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 5f02ef39338e9002c769c9df16766048c4f9bb0b Author: Alan Garny '' Date: Wed Jun 29 16:54:22 2016 +0200 A new file is not automatically considered as modified anymore '(closes' '#1020).' commit 876f4312e6196aa6aa171268ef4faccf6fe6327d Author: Alan Garny '' Date: Wed Jun 29 16:51:52 2016 +0200 Slight update to our download page '[ci' 'skip].' commit 8857e686e8b01638684a262244f09f9074e72372 Merge: dd7e17bb9 e67124004 Author: David Brooks '' Date: Wed Jun 29 15:47:51 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit b9c0e9611b7ceb6013db806133c8f572ec94ccfc Author: Alan Garny '' Date: Wed Jun 29 16:45:37 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e67124004a014ab3a8355a507bf84696d69ec624 Merge: eb59c6e25 1ef3dcce0 Author: Alan Garny '' Date: Wed Jun 29 13:45:49 2016 +0200 Upgraded to Qt 5.6.1 LTS + Qt WebKit '(closes' '#1015,' and also '#1010' as a 'result).' commit eb59c6e2567131a58afe5515b71bca3e45dcbd20 Author: Alan Garny '' Date: Wed Jun 29 13:28:45 2016 +0200 SED-ML API: slight update to the README.txt file '[ci' 'skip].' commit 1ef3dcce0281b610d962cbc4257f2383a0556cab Author: Alan Garny '' Date: Wed Jun 29 13:18:50 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Rebuilt the SED-ML API binaries. commit 692028c720353b8e5853a8edcae639dae177f438 Author: Alan Garny '' Date: Wed Jun 29 13:02:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Rebuilt the SBML API binaries. commit 5be87de495108be184bf47c6e3945134c56252e6 Author: Alan Garny '' Date: Wed Jun 29 12:57:37 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Rebuilt the SBML API binaries. commit d21d4c0da17e7a88adc676aa6a3de6ca1e3d55f8 Author: Alan Garny '' Date: Wed Jun 29 11:31:07 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 1b9e3c7b2df7f1de03c4d5ae678355f6546bace8 Author: Alan Garny '' Date: Wed Jun 29 11:26:19 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Got the CellML Tools tests to work again on Windows. commit 0349ac640bbac2ca4f0dc26269541b2049e3b854 Author: Alan Garny '' Date: Wed Jun 29 10:48:24 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Rebuilt the CellML API binaries. commit dd7e17bb9048d7a1a2b4572528a45adf29e0a094 Author: David Brooks '' Date: Tue Jun 28 20:34:23 2016 +0100 Tidy up. commit 38b8e1ab4cea1b68e01f9a1d9a621492c2d19ae9 Author: David Brooks '' Date: Tue Jun 28 20:33:53 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Always select a row after a single click in it. commit 45bfdfccf33f18af3b1898fdf0e94902f1859814 Author: David Brooks '' Date: Tue Jun 28 20:28:43 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Scroll workspaces view to the selected item after initialising and adding a new workspace. commit b83bca009137259b97cb49f119bd3115a26fc811 Author: David Brooks '' Date: Tue Jun 28 19:58:29 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Always use the default workspace '"home"' directory when getting an empty director in which to clone a workspace. commit 39739f0202eb6aa76d3ea1b79be7e3c9e08b18c8 Author: Alan Garny '' Date: Tue Jun 28 20:27:51 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit fc25e7dbf80d28cdecbb8be9cebbffc3cf10bfc0 Author: Alan Garny '' Date: Tue Jun 28 18:10:22 2016 +0200 LLVM: prevent a C2280 error on Windows using MSVC 2015. commit 7f0c32f2b99082ddc3d7ac1f850c4067734db563 Author: David Brooks '' Date: Tue Jun 28 16:29:19 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Action '``' links on a single mouse click. commit b4f1f8f0bb63e304806eb89cea0ee95434d9ed8f Author: David Brooks '' Date: Tue Jun 28 16:28:07 2016 +0100 Some work on PMRWorkspaces plugin '(#969)' Use a PMRWorkspacesManager singleton to ensure that the workspaces widget is told of all workspaces being cloned. commit 1f645622a03786b4aff398c74931f8a110399000 Author: Alan Garny '' Date: Tue Jun 28 16:02:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Getting ready to rebuild all of our third-party plugins '(so' that they refer to Qt '5.6.1).' commit 92a14efccdb131a4b6cbce4e93e85074ec47df66 Author: Alan Garny '' Date: Tue Jun 28 15:30:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 0db3499f0170e112eb830a45345e2cc3edf2f1a8 Author: Alan Garny '' Date: Tue Jun 28 14:58:05 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 0dc069aae1cc08ab32672d6ceabdfb128302644b Author: Alan Garny '' Date: Tue Jun 28 14:52:52 2016 +0200 Slight fix to our user documentation. We forgot to $'\342\200\230fix\342\200\231' this after we renamed our Tool plugin section to Tools. commit 8213609636a3ef1b28124af24914f2e86eebe1ee Author: Alan Garny '' Date: Tue Jun 28 14:52:18 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit a2a7ef34d2b67e44cbdb3647726275657b7e10ee Author: Alan Garny '' Date: Tue Jun 28 14:46:56 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 143c7d789475b5486f0366face8a3693976b7ec6 Author: Alan Garny '' Date: Tue Jun 28 14:37:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit bce80850ff1c9633ed2d01daaa83543b29835d1d Author: Alan Garny '' Date: Tue Jun 28 14:32:51 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit bc66b3fa4d292fd95d323e08f351fb906ce458c1 Author: Alan Garny '' Date: Tue Jun 28 14:27:52 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 6397bed199966191d72f8d6238f93a95c4bbcef4 Author: Alan Garny '' Date: Tue Jun 28 14:22:02 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit ceac7227d7d798a4adccfc41321d6636a3eaa830 Author: Alan Garny '' Date: Tue Jun 28 13:21:41 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 29fe77cba181eb19a038a7408ef6e3a4dc2aa44a Author: Alan Garny '' Date: Tue Jun 28 13:19:59 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Working on Windows now. commit c3634b2bbc79c0b63a990176cfebaa27ec1a3e33 Author: Alan Garny '' Date: Tue Jun 28 11:47:00 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 19f0021c49b0f08f2227fa8b9a436dbb6460a9a9 Author: Alan Garny '' Date: Tue Jun 28 11:46:21 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 776563e2249775d8548318f979d3ef708fc13a39 Author: Alan Garny '' Date: Tue Jun 28 11:42:57 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 29482f5f8cfed973c4d78b5ad5a4885836fcba7e Author: Alan Garny '' Date: Tue Jun 28 11:28:14 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 7395e571208503a8ab3d45ddab538f53fa87f7f3 Author: Alan Garny '' Date: Tue Jun 28 11:24:35 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 109cb80d19f0c288caa5c6450cb012a1f010647d Author: Alan Garny '' Date: Tue Jun 28 11:11:38 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Working on Linux $'now\342\200\246' commit 2419c74179a60afc8f3f2426d1fc858272cb948e Author: Alan Garny '' Date: Tue Jun 28 10:59:24 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Updated our Qt $'WebKit\342\200\231s' CMakeLists.txt file so that it now retrieve better our copy of the Qt WebKit libraries. commit dfae42815ef99f052e02de6a5572654dcd730ae1 Author: Alan Garny '' Date: Tue Jun 28 10:51:51 2016 +0200 Some minor cleaning up. commit c301f260d4956276bad5b7065744c47890052f0b Author: Alan Garny '' Date: Tue Jun 28 09:56:44 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Dealing with header files and making sure that $'it\342\200\231s' all fine for all our supported platforms. commit 6edbe636fb2b2b1c98447f91917f0c76e0bacb79 Author: David Brooks '' Date: Mon Jun 27 18:50:26 2016 +0100 Work on PMRWorkspaces plugin '(#969).' GCC 'doesn'\''t' like '`static' const 'int`.' commit 02b5d0026c77475eb924d98d310d45e654c805c1 Author: David Brooks '' Date: Mon Jun 27 18:49:40 2016 +0100 Work on PMRWorkspaces plugin '(#969).' Template instantiations are only needed for Visual C. commit 1664cc65620e69af688beb4df59b8fef3da8eb41 Merge: 71a338c07 904f8725d Author: David Brooks '' Date: Mon Jun 27 18:41:37 2016 +0100 Merge remote-tracking branch ''\''upstream/issue1015'\''' into pmrworkspace-webkit commit 904f8725d91e23af69cc14a148365774fad20642 Author: Alan Garny '' Date: Mon Jun 27 17:56:29 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' On OS X, we can now retrieve the Qt WebKit libraries from the OpenCOR website, if needed. commit 7eb3ff5d0cb09b580566b584ae533eb8ca7c2f5a Author: Alan Garny '' Date: Mon Jun 27 17:55:00 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 71a338c07cda11f92beec6c362fe7152fe6f4da6 Merge: f5c501135 0b8df5098 Author: David Brooks '' Date: Mon Jun 27 16:13:22 2016 +0100 Merge remote-tracking branch ''\''upstream/issue1015'\''' into pmrworkspace-webkit commit 0b8df50987b76913b28c6484c47bfe945981a75c Author: Alan Garny '' Date: Mon Jun 27 16:43:41 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit f5c5011350ea0b83c1871d5c8b9155be89fbaeea Merge: 180112c47 9a2d169c6 Author: David Brooks '' Date: Mon Jun 27 15:36:32 2016 +0100 Merge branch ''\''issue1015'\''' into pmrworkspace-webkit commit 9061dc331c635b9cde21d94ef5ef1819e8b4536a Author: Alan Garny '' Date: Mon Jun 27 16:21:41 2016 +0200 Some minor cleaning up. commit e45580cf72f48f6e850194f63d8ecdc444acf29a Author: Alan Garny '' Date: Mon Jun 27 16:02:30 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Some minor cleaning up. commit 9a2d169c6ba6c59568b30a4f206cc3d3b24fc54b Author: Alan Garny '' Date: Mon Jun 27 15:38:43 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Some minor cleaning up. commit 0d3c2c599955c352f9694a7c7051b699633067c5 Author: Alan Garny '' Date: Mon Jun 27 15:38:19 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Some minor cleaning up. commit 084dcadb3e6b303835e8aefdde7f72886f2c73d3 Author: Alan Garny '' Date: Mon Jun 27 15:24:32 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Got things to work on OS X. However, the QtWebKit and QtWebKitWidgets frameworks will have to be retrieved off the OpenCOR website rather than currently being manually copied over. commit cb47d4070b0e008aae11518122465087350aec97 Author: Alan Garny '' Date: Mon Jun 27 11:43:52 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' Disable some plugins that we cannot currently build. commit 43916a4b87ff6db371e3c6731e4731adc11454f7 Author: Alan Garny '' Date: Mon Jun 27 11:43:31 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 180112c4730152ab225727ea3cd18c7625e53ff9 Author: David Brooks '' Date: Sun Jun 26 19:41:48 2016 +0100 Define '`O2_DLL_EXPORT`' when building '`o2`' library. commit a4ef3d092251448105fa14717a7d631ee8875987 Merge: 157e8a2eb 88433f07b Author: David Brooks '' Date: Sun Jun 26 19:39:47 2016 +0100 Merge branch ''\''pmrworkspace'\''' of github.com:dbrnz/opencor into pmrworkspace commit 157e8a2eb943b6009dc19d1de7f6c60289aae31c Author: David Brooks '' Date: Sun Jun 26 19:37:46 2016 +0100 'Don'\''t' crash if an icon has no available sizes. commit 3c03a62a0a777a59c3440896f379dcaa03e5dd51 Author: David Brooks '' Date: Sun Jun 26 19:36:29 2016 +0100 Tweak icons displayed against workspaces '(#969)' commit 88433f07bddfa89db0f95ea0eef64dcf839d6414 Author: David Brooks '' Date: Sun Jun 26 13:08:37 2016 +0100 Translation files have new text. commit 804d9cf723bdf3adf043401f72539a81ac405c15 Author: Alan Garny '' Date: Sun Jun 26 12:47:02 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 8f109131a66e03dad8607347d011a81c05599971 Author: David Brooks '' Date: Sun Jun 26 10:21:05 2016 +0100 Use newer version of '`o2`' that supports Windows DLLs. commit 644c314b31339772a02e1b18743e53fa72f89167 Author: David Brooks '' Date: Sat Jun 25 16:24:42 2016 +0100 Get a clean compile under Windows. commit 438b7885a4d4c90e8a5ef2924851e3585b0c6ea0 Author: Alan Garny '' Date: Sat Jun 25 08:27:49 2016 +0200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit d64f856d576acd0403ee5cdaa20758322d09c67a Author: Alan Garny '' Date: Sat Jun 25 10:27:03 2016 +0400 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 4494387efd0aa114f1b12226ef91326960540aff Author: David Brooks '' Date: Fri Jun 24 17:17:51 2016 +0100 Fix typo. commit 4a92b017e19919c860563fc90f0dd7d91392004a Merge: b04d56343 48a758680 Author: David Brooks '' Date: Fri Jun 24 13:02:56 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit b04d563434c8b9abc39a185b83cd3c4cede9ca82 Author: David Brooks '' Date: Fri Jun 24 00:31:21 2016 +0100 Remove debugging. commit 5f473c28beddd45912569164f4ebb8ee9882ef19 Author: David Brooks '' Date: Fri Jun 24 00:12:04 2016 +0100 Add directory for git sub-module for OAuth library. commit 0b402cc5dc685ae2692eb918792a14a63d9e2337 Author: David Brooks '' Date: Thu Jun 23 23:39:45 2016 +0100 Tidy up handling of PMR repository messages in exposures window. commit f758e3884c3de26f63231f316dc4dbc1c8df044c Author: David Brooks '' Date: Thu Jun 23 23:38:03 2016 +0100 Use '`PMR_PRODUCTION`' compile time definition to select production or staging PMR instance '(#969)' commit 8b8377d52d39c8051d2f6b97231a30e0e9a139e6 Author: David Brooks '' Date: Thu Jun 23 23:35:41 2016 +0100 Tidy up comments and code layout. commit 97228c695a3ef2a40453cff2d86c88b54669539a Author: David Brooks '' Date: Thu Jun 23 23:34:29 2016 +0100 The widget sorts the workspace list into name order, not the repository. commit 136e0dafd624603775d8ca556797e7fd3af20c37 Author: David Brooks '' Date: Thu Jun 23 23:33:19 2016 +0100 Workspaces widget is working: expand/collapse tree 'view;' our own context menu, tooltips, and mouse 'handling;' layout 'tidy;' distinguish our PMR workspaces from other 'clones;' etc, etc '(#969)' commit 6b16340653c1e505e3e029b684e46f788913f5b4 Author: David Brooks '' Date: Thu Jun 23 23:24:30 2016 +0100 Declare workspace created/cloned slots in the workspace widgets class. commit 71ad3a93c2b4870aea40da6ac0cfafc318fd04f5 Author: David Brooks '' Date: Thu Jun 23 23:19:38 2016 +0100 Reorder code. commit 24ae8abf65da2dcff40d8b443ee1d5a86877c3a0 Author: David Brooks '' Date: Thu Jun 23 23:17:01 2016 +0100 Remove unused code and historical comments. commit 83b782041c783d98b29a3014ddc8ad4e066e3fe8 Author: David Brooks '' Date: Thu Jun 23 23:05:41 2016 +0100 Remember the names of folders that have workspaces in the 'plugin'\''s' settings. commit 03e0b97631f44e7200256e074365be685389bb38 Author: David Brooks '' Date: Thu Jun 23 23:02:35 2016 +0100 Getting the default workspaces directory is now a function call. commit 267323e4b011444565ab4271877868acaa2955ed Author: David Brooks '' Date: Thu Jun 23 23:00:35 2016 +0100 Actually connect to the workspace created/cloned signals. commit ce40abe56e821ba3d051f9bc1486e47522b4dca2 Author: David Brooks '' Date: Thu Jun 23 22:58:46 2016 +0100 The 'workspace'\''s' window handles warnings from its widget. commit f005091f530ab6b5826b51bc2783e72035106cec Author: David Brooks '' Date: Thu Jun 23 22:57:25 2016 +0100 Add option to scan the default 'workspace'\''s' directory when refreshing the workspace display. commit c0dad9582f5947523d9f3fa0e35bb930f2b8f0e0 Author: David Brooks '' Date: Thu Jun 23 22:53:52 2016 +0100 Handle workspace created/cloned signals in the 'workspace'\''s' widget, not the containing window. commit 46c5023b9cab80e92829fb221d56047a37a08618 Author: David Brooks '' Date: Thu Jun 23 22:50:21 2016 +0100 Add '`Rescan' workspace 'folders`' to context menu of workspace window, tidy up toolbar layout, and use global icons. commit 6c6c70f52b67f32846db563489ce0357e3b8068b Author: David Brooks '' Date: Thu Jun 23 22:30:33 2016 +0100 Update PMR authenticated and unauthenticated icons. commit 8406aec1fb5fca9da6aa19dc12c3fc1b42e80a83 Author: David Brooks '' Date: Thu Jun 23 22:29:52 2016 +0100 By default emit an information message when PMR responds with a 403 '(unauthorised)' error. commit 505b8c388b2869c0988cfc3fbbc62d9d6a0b66a9 Author: David Brooks '' Date: Thu Jun 23 22:27:49 2016 +0100 Add '`PmrRepository::getWorkspace`' to get information about a workspace from PMR. commit 66a5e91784e8f3a49df9187f7b5ef60ae59f1b87 Author: David Brooks '' Date: Thu Jun 23 22:21:24 2016 +0100 Remove unused files. commit a848987679157b5443d6760faa18f9add3456cbc Author: David Brooks '' Date: Thu Jun 23 22:20:52 2016 +0100 Code clean up. commit a65d0717cae2a2713a410aeb7780c6bc648150a5 Author: David Brooks '' Date: Thu Jun 23 22:17:01 2016 +0100 Add methods to find a git 'repository'\''s' '`remote.origin.url`' and to return the status of a repository and of files in it. commit 5b105a0db4d3ed83e9134b3954b7fb45329dddf9 Author: David Brooks '' Date: Thu Jun 23 22:12:54 2016 +0100 Directly use '`Basic`' authentication for git and 'don'\''t' have a credentials callback. commit 6774cae7cf2f1676bb5c42a3c6028bac845bac8f Author: David Brooks '' Date: Thu Jun 23 10:57:44 2016 +0100 Flag a workspace as '`owned`' if 'it'\''s' in '`my-workspaces`.' commit 6bc1b7c31c46a793b9c1344357a1545ceb1cf889 Author: Alan Garny '' Date: Thu Jun 23 13:35:09 2016 +1200 Some work towards upgrading to Qt 5.6.1 LTS + Qt WebKit '(#1015).' commit 48a7586804582e41de0df1d17085a05d8b34cdca Author: Alan Garny '' Date: Thu Jun 23 13:09:06 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 48b04b00448e687af693ac0fdcd76f8d04da69c5 Author: David Brooks '' Date: Wed Jun 22 22:21:08 2016 +0100 Display the progress of git operations in our busy widget. commit cf6b3bfadb5f1c9868860033ffca34a23c1363dc Author: David Brooks '' Date: Wed Jun 22 22:13:36 2016 +0100 Rationalise the names of some '`PmrRepository`' methods. commit 558b71135d35fa1063015110db0bb779ddf89db0 Author: David Brooks '' Date: Wed Jun 22 22:03:31 2016 +0100 Ensure we re-authenticate when switching to a new PMR instance. commit fa74ff51411c6f10def872fe3c63d3d846d188fc Author: David Brooks '' Date: Wed Jun 22 22:01:10 2016 +0100 Emit '`unauthorised(QString)`' if we receive a 403 response from PMR. commit 766712bd70858301cff01beb1a0e5f41988bed35 Author: David Brooks '' Date: Wed Jun 22 21:59:38 2016 +0100 'Don'\''t' show debug messages from OAuth library in debug builds of OpenCOR. commit c54b2f1ec48478931b2ed5aeb85e3d15333f2c73 Author: Alan Garny '' Date: Wed Jun 22 19:24:27 2016 +1200 CellML Text view: now allow the user to save the contents of the view to a text file if it cannot be saved as a CellML file '(closes' '#998).' commit d93e6d8a1c209b1cb22360935ad2f51270f4a231 Author: Alan Garny '' Date: Wed Jun 22 18:30:32 2016 +1200 Single Cell view: improved the loading/reloading of a file '(closes' '#1017).' commit 064ef6323c5443364b76f6dedec1bdab0b49d358 Author: Alan Garny '' Date: Wed Jun 22 17:13:33 2016 +1200 Slight update to the user documentation '[ci' 'skip].' commit e83fbf7697748d10e4b5b5932ed038dbca3c5172 Author: Alan Garny '' Date: Wed Jun 22 16:04:20 2016 +1200 Single Cell view: ensure that all model parameters are always listed '(closes' '#1016).' commit 7fa4d2401748130ab0213005ff2d60aa552ff82a Author: Alan Garny '' Date: Wed Jun 22 15:09:54 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed '(#1016).' Note that although our tests work fine with our current approach, it may not be fine for a model that only imports units. Something to be $'tested\342\200\246' commit 1ebd06709d56fe49f47f3a8f9c6faabbdfb31b7e Author: Alan Garny '' Date: Wed Jun 22 10:44:31 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed '(#1016).' commit 312ffbc016f0d88569e89fa9d3e8bf74d9f02de3 Author: Alan Garny '' Date: Wed Jun 22 09:03:53 2016 +1200 Single Cell view: some work on ensuring that all model parameters are always listed '(#1016).' commit b5a54c865cbfeb2d5b0a7639ba851f56f231566b Author: Alan Garny '' Date: Tue Jun 21 20:57:25 2016 +1200 Some minor cleaning up. commit ff686df7aa6e5542e9d5124e730f6b8f940aefcb Author: Alan Garny '' Date: Tue Jun 21 20:49:08 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit fb29751db4e0fa9cc98efc227f04d7b967516792 Author: Alan Garny '' Date: Tue Jun 21 20:31:55 2016 +1200 Single Cell view: only initialise our Graph Panels widget by adding a graph panel if none exists '[ci' 'skip].' Indeed, otherwise reloading a CellML file will automatically add a new graph $'panel\342\200\246' '(!!)' commit ab4d1fc7aed45f4d576562916d114e4d1bdd166e Author: Alan Garny '' Date: Tue Jun 21 17:11:40 2016 +1200 Slight update to the developer documentation '[ci' 'skip].' commit 9d54d5270b5415c828eb0c989d613fe94334291c Author: Alan Garny '' Date: Tue Jun 21 14:03:27 2016 +1200 Slight update to the downloads page '[ci' 'skip].' commit eb2829715958fa58859c3631739084d7f0419053 Author: Alan Garny '' Date: Tue Jun 21 13:50:12 2016 +1200 Single Cell view: the user can now synchronise the X and/or Y axes of all the graph panels '(#1000).' Addressed the case where we add a graph panel. Indeed, since the two actions were at the GraphPanelPlotWidget level, it means that they were not properly set '(especially' when one or the two axes had to be 'synchronised).' So, now, we define those actions at the GraphPanelsWidget level. commit fad1840239760322fc3ef1b9c9d19239088745bf Author: Alan Garny '' Date: Tue Jun 21 12:50:42 2016 +1200 Single Cell view: fixed a problem with some model parameters being listed in the wrong component '(closes' '#1014).' commit 2e3d2d648ad2eb4ae2dd904ed7ae338569817279 Author: Alan Garny '' Date: Tue Jun 21 12:49:47 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b6ea2de89f8d3f4cc6beb664ab5e4fa37d7dd146 Author: Alan Garny '' Date: Mon Jun 20 19:42:09 2016 +1200 Slight updates to the downloads and what is new pages '[ci' 'skip].' commit 1e01a733337bdc4d68dfdcee564282810cd3cab7 Merge: c2870543e 6ad304fb5 Author: Alan Garny '' Date: Mon Jun 20 19:39:44 2016 +1200 Single Cell view: the user can now synchronise the X and/or Y axes of all the graph panels '(closes' '#1000).' commit 6ad304fb57d1f3079b2c3c43f09768cd72ac2d28 Author: Alan Garny '' Date: Mon Jun 20 19:20:23 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit 886ced9ece110f4da3e7c6ecfd17337a916719dd Author: Alan Garny '' Date: Mon Jun 20 17:30:12 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit 207e02164e61e25670ce1bca649d98c65ae26a66 Merge: 10833445a c2870543e Author: Alan Garny '' Date: Mon Jun 20 15:16:46 2016 +1200 Merge branch ''\''master'\''' into issue1000. commit c2870543ec1a0966c745b01acf226ecf5b2977b1 Author: Alan Garny '' Date: Mon Jun 20 15:03:27 2016 +1200 Travis CI: slight update to our script to get the qtwebengine '(formerly' known as 'qt5.6)' to build upon committing something '[ci' 'skip].' commit d30d11bca9a6cc25e3d8a30afbd5fa020135efba Author: Alan Garny '' Date: Mon Jun 20 14:58:39 2016 +1200 Single Cell view: the plotting of several graph panels is now much smoother '(closes' '#1011).' commit 2489bfc0d8727516bc1438f3760c0686e69dadc7 Author: Alan Garny '' Date: Mon Jun 20 14:58:15 2016 +1200 Single Cell view: the plotting of several graph panels is now much smoother '(closes' '#1011).' commit 42cb5577cb1db2d520955be5bff3a8ad06c2c942 Author: David Brooks '' Date: Sun Jun 19 20:55:41 2016 +0100 Delay requesting initial authentication status '(and' hence the list of 'workspaces)' until windows have been fully resized '(#969).' commit 4fc71514d04aa28819eb32aff60080bc5922d2cf Author: David Brooks '' Date: Sun Jun 19 19:45:03 2016 +0100 Add missing include. commit 312d874be45e355cf0148d0b7cbd6a8c2552052c Author: David Brooks '' Date: Sun Jun 19 19:43:37 2016 +0100 Put a border around the 'workspaces'\''' widget '(#969)' commit 9fee646741f592ce5d6d8fa131b884a4dcfd49e5 Author: David Brooks '' Date: Sun Jun 19 19:40:03 2016 +0100 Add a '"Refresh"' icon to 'workspaces'\''' window and clean up initialisation code '(#969)' commit 59b837a5453183bd3f59a674f342779e8b30bf1c Author: David Brooks '' Date: Sun Jun 19 19:36:40 2016 +0100 Show repository messages and status in 'workspaces'\''' window '(#969)' commit 3f73ba5226f5ff532d2fbd57922a7e79db6e6f93 Author: David Brooks '' Date: Sun Jun 19 19:32:55 2016 +0100 Correctly display/set the path in which to clone a newly created workspace '(#969)' commit 9c401e7bbbb2ed564bc6246e060005a8a6b1b92f Author: David Brooks '' Date: Sun Jun 19 19:28:33 2016 +0100 Emit '`finished()`' when we have finished processing a repository response '(#969)' commit 55dc8b6301f2ac7330353f0dbc3b071c08b264dc Author: David Brooks '' Date: Sun Jun 19 19:14:48 2016 +0100 Get git authentication working and clone newly created workspace '(#969)' commit 10833445a31be456dc4b927f80e9946b3e783a3b Author: Alan Garny '' Date: Sun Jun 19 11:59:56 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit dc697b090c9f0b1072f7fef49bf75e5e57ae045e Author: Alan Garny '' Date: Sun Jun 19 11:31:01 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit aa5961adc49116927ec9f20c6e39284f6ad4a10c Merge: 24e60f0a9 561535cac Author: Alan Garny '' Date: Sun Jun 19 11:29:41 2016 +1200 Merge branch ''\''master'\''' into issue1000. commit 561535cac43f32d643be0e14cb89e50a84890c03 Author: Alan Garny '' Date: Sun Jun 19 11:29:17 2016 +1200 Slight update to the user documentation '(#997)' '[ci' 'skip].' commit 24e60f0a920eb9a2cd439c11190c0b710a1a8dfb Author: Alan Garny '' Date: Sun Jun 19 11:16:03 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit a1607e2f468e80b5b1103d29278b69d2c58f5600 Author: Alan Garny '' Date: Sun Jun 19 10:31:32 2016 +1200 Single Cell view: some work on allowing the user to synchronise the X and/or Y axes of all graph panels '(#1000).' commit a4ea702ba658ab334f6c12c247125a6ed2613422 Author: Alan Garny '' Date: Sat Jun 18 21:07:11 2016 +1200 Single Cell view: slight improvements to the way we allow the user to manually define the axes of a graph panel '(#997).' commit 0e6609534fadc44029b9a1cb6a25c7091dcc114f Author: Alan Garny '' Date: Sat Jun 18 16:41:54 2016 +1200 Slight updates to our downloads and what is new pages '[ci' 'skip].' commit 9d932f2efdfd80f7ac14077b5762f409e01b5be2 Merge: b3b2431cd 47cdfbff9 Author: Alan Garny '' Date: Sat Jun 18 16:36:32 2016 +1200 Single Cell view: now allow the user to manually define the axes of a graph panel '(closes' '#997).' commit 47cdfbff9f04776d7d9dcb118b5139ff4d699223 Author: Alan Garny '' Date: Sat Jun 18 16:17:54 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel '(#997).' commit b51adf34710d7196de3adf8659953b5ee162cf7b Author: Alan Garny '' Date: Sat Jun 18 16:09:39 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 807288998f4d88143afe4bc900230633651ad288 Author: Alan Garny '' Date: Sat Jun 18 15:33:27 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel '(#997).' commit 1306eddbdf00fa042ec63ddcf25222a6d820e009 Author: Alan Garny '' Date: Sat Jun 18 14:43:20 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 741bc40731e81e60479e5583604a3ac9bb82efbc Merge: db88be09b b3b2431cd Author: Alan Garny '' Date: Sat Jun 18 14:25:25 2016 +1200 Merge branch ''\''master'\''' into issue997. commit b3b2431cdc90b6e967693b9ad8d207675fdd424a Author: Alan Garny '' Date: Sat Jun 18 14:25:07 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit ebd3f0aee6d69d8044b3c7c9acde941e1489b406 Author: Alan Garny '' Date: Sat Jun 18 14:19:28 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit db88be09bc2a8ebff1138b1f02eaf6a89bbf2e23 Author: Alan Garny '' Date: Sat Jun 18 14:09:15 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel '(#997).' commit 7e0e3606d17f6a5749125a8d00c880f63c6e987d Author: Alan Garny '' Date: Sat Jun 18 12:21:46 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel '(#997).' commit 8cfde79f7ba358a33e8c5218a9c710e8398e6976 Merge: dc9c94e9c e33dcf694 Author: Alan Garny '' Date: Sat Jun 18 12:11:03 2016 +1200 Merge branch ''\''master'\''' into issue997. commit e33dcf694cf3a5f19cc89977754bb3961816f3e1 Author: Alan Garny '' Date: Sat Jun 18 12:10:06 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit dc9c94e9c943af2d5d00ade19cb4d0c082baa04e Author: Alan Garny '' Date: Sat Jun 18 11:59:21 2016 +1200 Single Cell view: some work on allowing the user to manually define the axes of a graph panel '(#997).' commit b4b0e25d5d1b402d98be5452e2674e36c5d495e6 Author: Alan Garny '' Date: Sat Jun 18 11:48:39 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit e321e51dff038a9a6c1a599887f55fd98cfd0159 Author: Alan Garny '' Date: Sat Jun 18 10:47:35 2016 +1200 Slight update to our prerequisites page '[ci' 'skip].' commit 7d5ea7606ffa101ebeff3be8dddf7c6467cdd534 Author: David Brooks '' Date: Fri Jun 17 22:31:40 2016 +0100 Use correct signature for '`workspaceCloned`' signal/slot commit 00747d7c15eb79582f743d7643779e5d3077fffc Author: David Brooks '' Date: Fri Jun 17 20:26:40 2016 +0100 '`Core::WebViewWidget`' is now '`WebViewerWidget::WebViewerWidget`' commit 572e858646052cdd44a3efd1d3d34444fba334fa Author: David Brooks '' Date: Fri Jun 17 20:03:27 2016 +0100 Use global '`Oxygen`' images '(#982)' commit 7a973e64740489e97025c210806494860e3371b1 Author: David Brooks '' Date: Fri Jun 17 19:38:23 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 40d183a2b6dab8d6babd756111e6db9f3efff2c1 Author: David Brooks '' Date: Fri Jun 17 18:29:26 2016 +0100 Implement workspace creation '(#969)' commit 3a2d74d6af534b4eff8f776e9b410c0f4b942260 Author: David Brooks '' Date: Fri Jun 17 18:27:11 2016 +0100 Remove unused code. commit 3102e9cefd87f567058646c2241a8c79e2e43cfe Author: David Brooks '' Date: Fri Jun 17 18:26:37 2016 +0100 Use a separate thread to clone a workspace '(#848)' commit fcb8b97eb9083132f4cf8b1b4aad8124fb493ebf Author: David Brooks '' Date: Fri Jun 17 18:22:36 2016 +0100 Use new methods in '`PmrRepository`' to request exposures and workspaces '(#969)' commit 76dd94f4099f7dd4b5cf5f3a4282c15a30089c40 Author: David Brooks '' Date: Fri Jun 17 18:00:49 2016 +0100 A global '`PmrRepository`' instance means error messages can go to the wrong plugin, so have an instance per plugin. commit 0d2e54109deae470eebe1703e58068ec6bc29b65 Author: David Brooks '' Date: Fri Jun 17 17:57:44 2016 +0100 Separate out network access and responses from '`PmrRepository`' class so that 'it'\''s' easier to add new requests/responses for workspace management '(#969).' commit d565197e4ef80d00b0d129fc4fa916f5d340a175 Author: Alan Garny '' Date: Fri Jun 17 20:27:06 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 856c27787eb43421c15902b3321dd7d81b5420e9 Author: Alan Garny '' Date: Fri Jun 17 10:06:48 2016 +0200 Get OpenCOR to build on Windows '(related' to issue '#1004).' This should have been checked/tested before, I know... commit 6128c46a7473d81888575b5999e5c44d5cdc192c Author: Alan Garny '' Date: Fri Jun 17 17:33:54 2016 +1200 Slight update to our test SED-ML file and COMBINE archive '[ci' 'skip].' commit a583a684f47c793b505186016a07e44d177ee35d Author: Alan Garny '' Date: Fri Jun 17 17:33:05 2016 +1200 Some minor cleaning up '[ci' 'skip].' Avoids a crash when a CellML file, SED-ML file or COMBINE archive is invalid. commit 69c9e7f14378e271d8972b852c77441d90ec5d09 Author: Alan Garny '' Date: Fri Jun 17 16:04:07 2016 +1200 Slight update to our downloads page '[ci' 'skip].' commit 761890195cb63f9ac9a73c77071d624c5de28233 Merge: a94c48276 c36771c77 Author: Alan Garny '' Date: Fri Jun 17 15:56:22 2016 +1200 Merged and renamed some of our plugins '(closes' '#1004).' commit c36771c771d40ceefde771a9b69919241b172ca1 Author: Alan Garny '' Date: Fri Jun 17 15:38:01 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 17884448505b6d66dc6f936625b3b00c89033bf3 Author: Alan Garny '' Date: Fri Jun 17 15:11:00 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 1f050b654766b0d3f4cfa045cf0d703e44a9f620 Author: Alan Garny '' Date: Fri Jun 17 14:57:51 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit df44fadb2e0443197892dfe14c934f10187abd8b Author: Alan Garny '' Date: Fri Jun 17 13:48:57 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit aec4ea142dbd1f1cf26c9cf9ec72188d99c904aa Author: Alan Garny '' Date: Fri Jun 17 13:47:06 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit b80d639dc3ae642b2ef7884cd9161db9a65370a9 Author: Alan Garny '' Date: Fri Jun 17 12:10:30 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 17ccc0a19abc0d3d5ab133e99ef772c16cabe454 Author: Alan Garny '' Date: Fri Jun 17 12:04:51 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 3c3634b108dbc27b19ce068ee9cf0339a72f1d55 Author: Alan Garny '' Date: Fri Jun 17 11:51:49 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 48664175ad2dff159825309a801508060eba929e Author: Alan Garny '' Date: Fri Jun 17 11:43:28 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 225ec869e5c46cc56a03e6d9101e89819e0a4385 Author: Alan Garny '' Date: Fri Jun 17 11:20:20 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 984ff6ae58fd9ed5088e40bfa8e767c9da391491 Author: Alan Garny '' Date: Fri Jun 17 11:03:38 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b02cf79e4248de9c5c2d07aa20d61a35234f6f75 Author: Alan Garny '' Date: Fri Jun 17 10:18:20 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit c1525653ee48a8ea07b30340272d9ef473356dae Author: Alan Garny '' Date: Fri Jun 17 10:12:13 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 2691dd0fd7f76ec930e03c8cafc2fad0e2b27889 Author: Alan Garny '' Date: Thu Jun 16 19:55:23 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 334c80ec46ffbe2a7aa932123359badf87063311 Author: Alan Garny '' Date: Thu Jun 16 19:28:59 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 7ebaedd34dcde9c7a4164333904bbe564d3f538c Author: Alan Garny '' Date: Thu Jun 16 18:27:06 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit e754c418ae6ddad2c4fa32678628ecbbd9940a25 Author: Alan Garny '' Date: Thu Jun 16 18:24:53 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 01bca387a5ec64a7a56bb325e26b48d20f9b222b Author: Alan Garny '' Date: Thu Jun 16 16:51:36 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit bbf69d690adcaebf106a91d53226b8895d5dabd1 Author: Alan Garny '' Date: Thu Jun 16 16:37:56 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit 1ca2cca88f9ed72d1f6708637c4e2335c13f25cc Author: Alan Garny '' Date: Thu Jun 16 15:25:14 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit e3eee558faebf8aaf61a7ec42eeb6669ce412cf1 Author: Alan Garny '' Date: Thu Jun 16 15:24:19 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit cbe47c09324c67e7b4c1bf30affc5402d7e8d0c9 Author: Alan Garny '' Date: Thu Jun 16 15:14:53 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b5e3630932e6f4a87c87b87e2e5d2986e2068464 Author: Alan Garny '' Date: Thu Jun 16 15:06:48 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 81a5c5b91ff46e39b751626c315a35e409ab391a Merge: 43326a0aa a94c48276 Author: Alan Garny '' Date: Thu Jun 16 14:51:23 2016 +1200 Merge branch ''\''master'\''' into issue1004. commit a94c48276668beccb88357bc64d8df4334743388 Author: Alan Garny '' Date: Thu Jun 16 14:50:45 2016 +1200 Single Cell view: now use better colours/symbols in the Parameters window '(closes' '#634).' commit 43326a0aa464149d3764b1ba790c15bb1592d5c3 Author: Alan Garny '' Date: Thu Jun 16 09:41:32 2016 +1200 Some work on merging and renaming some of our plugins '(#1004).' commit ec70712fce1307d37fcb6d8e15a44a148be965d1 Author: Alan Garny '' Date: Wed Jun 15 18:16:42 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit aae44be6f884ae219738633753d5e5670c4995ef Author: Alan Garny '' Date: Wed Jun 15 17:57:27 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b9d9d71e16d7426700190820383a1f81fbe6eb1a Author: Alan Garny '' Date: Wed Jun 15 16:46:44 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 1c744bd9191051c96a7336ae9bd680293f607604 Author: Alan Garny '' Date: Wed Jun 15 16:42:04 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 5aaa587ce090d4ad8c5eeef314cf9953407ec33d Author: Alan Garny '' Date: Wed Jun 15 16:23:13 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit d0cd2f04b223a14c6b4a44531886488689ca0769 Author: Alan Garny '' Date: Wed Jun 15 16:23:00 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit fc4f737dc8408f9333f02a10ddb317cf96ba7ffe Author: Alan Garny '' Date: Wed Jun 15 15:36:39 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 2e63c84d16f4bd5e8437e87917b236b3c95bc10c Author: Alan Garny '' Date: Wed Jun 15 15:30:39 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit a471dfb6aaa3f26ae55ace2d18a34bafe3f59fab Author: Alan Garny '' Date: Wed Jun 15 14:10:56 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 1539ddba15d2c003b6e677f64cc95d95bfd54433 Author: Alan Garny '' Date: Wed Jun 15 14:06:26 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 44e843ecaf79273a84f3af7d77d9976628dff579 Author: Alan Garny '' Date: Wed Jun 15 13:52:55 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit a754409dae0431d6ff2554bf32b9d027276c0fcc Author: Alan Garny '' Date: Wed Jun 15 13:31:21 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 8edbe41badda120e23b2e023cfa078668b76a47d Author: Alan Garny '' Date: Wed Jun 15 13:30:55 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 41e3e032a2541b84877e25763686113c156fbe19 Author: Alan Garny '' Date: Wed Jun 15 11:59:44 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit f217a6b091b625c6dc45682c934de59641a08cd2 Merge: fdbd4c341 a832be444 Author: Alan Garny '' Date: Wed Jun 15 11:16:02 2016 +1200 Qwt library: upgraded to version 6.1.3 '(closes' '#1002).' commit a832be444cf8264827aa516e59b6b0609a7ffeda Author: Alan Garny '' Date: Wed Jun 15 11:14:17 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 '(#1002).' commit 3e1f9ab158bc8b6d6c6e32aedd9ca72dc6e2b0d7 Author: Alan Garny '' Date: Wed Jun 15 10:46:13 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 '(#1002).' commit 3e9a36f5cd4491ecc05e6e8651948aa02c782ebc Author: Alan Garny '' Date: Wed Jun 15 10:31:40 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 '(#1002).' commit b0746070b4146606f2b4ed1389c08b4cbee25695 Author: Alan Garny '' Date: Wed Jun 15 10:29:22 2016 +1200 Qwt library: some work on upgrading to version 6.1.3 '(#1002).' commit fdbd4c3411f4f6965813abfddf7d57bb026896d3 Author: Alan Garny '' Date: Wed Jun 15 10:24:44 2016 +1200 jQuery: upgraded to version 3.0.0 '(closes' '#1001).' commit b3d23f842156c66a32024d61a9bb2db8c56e0bfb Author: Alan Garny '' Date: Tue Jun 14 08:39:56 2016 +0200 Only exporting what is needed. commit aa839c50388be5ba96bcc67e50c65cd76d6a74fd Author: Alan Garny '' Date: Tue Jun 14 18:28:07 2016 +1200 Only exporting what is needed. commit 175d1743434611272d92ca02054dfb10afe2da6f Author: Alan Garny '' Date: Tue Jun 14 17:39:06 2016 +1200 Slight updates to the what is new and downloads pages '[ci' 'skip].' commit 46e8065592d67ba70f208e6cdbeb88395d596d53 Merge: e574f5482 2289adbc4 Author: Alan Garny '' Date: Tue Jun 14 17:38:16 2016 +1200 Data store exporter: now run in its own thread '(closes' '#849).' commit 2289adbc44f7e13912205ed989fd6cedf2961b1d Author: Alan Garny '' Date: Tue Jun 14 17:21:19 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit ea18c6b4f595f86c205438f9c411dbf8357231be Author: Alan Garny '' Date: Tue Jun 14 17:19:54 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit dddead392e0a22f9f7dd37a410f7947d0f370ccf Author: Alan Garny '' Date: Tue Jun 14 15:19:18 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit ae494bb3bc90662f50f19f74c2d0ab805a4d336b Author: Alan Garny '' Date: Tue Jun 14 14:29:44 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit 4e01ab141f166ff7d7fed94a85ba3e2de3371adc Author: Alan Garny '' Date: Tue Jun 14 14:09:40 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit 9c38d204f72461a8d978b6d93ff9265c1e8e107e Author: Alan Garny '' Date: Tue Jun 14 12:01:47 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit 9dda52dc410a53a90d8c2bbc2ee5111a140c4a54 Author: Alan Garny '' Date: Tue Jun 14 11:36:03 2016 +1200 Data store exporter: some work on making it run in its own thread '(#849).' commit 6623f364db31fcb37634a0ace73761464253a196 Author: Alan Garny '' Date: Mon Jun 13 16:28:54 2016 +1200 BioSignalML: some work on making the code style more in line with the rest of the OpenCOR code '(#856).' commit 20bee1576a86a713410a46dcc164626257e1466b Merge: f5f362325 e574f5482 Author: Alan Garny '' Date: Mon Jun 13 16:15:46 2016 +1200 Merge branch ''\''master'\''' into issue856. commit e574f5482edfe3d35473f4d8daf7ca1c05d382b6 Author: Alan Garny '' Date: Mon Jun 13 16:08:55 2016 +1200 Text-based editing views: fixed a small problem with losing the focus and not being able to track changes to a file after having reloaded another file that depends on it '(closes' '#996).' commit dcd9d3232f451cd7bd43a82f995aba0560b52957 Author: Alan Garny '' Date: Mon Jun 13 15:57:39 2016 +1200 Some minor improvement '[ci' 'skip].' commit 86f55f363465c29e821db906f4e562947a89a7d1 Author: Alan Garny '' Date: Mon Jun 13 14:46:24 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b671de2076dc89be494c6349fb672a333f7fc5f9 Author: Alan Garny '' Date: Mon Jun 13 13:50:08 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 90c0f82d7800b59b06c11cfb722caaf3d006e101 Author: Alan Garny '' Date: Mon Jun 13 13:21:58 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit f5f3623254b28f3e161e4ebcfc4b919a792425e5 Merge: f814f8cf1 dcfc353bd Author: Alan Garny '' Date: Mon Jun 13 10:19:55 2016 +1200 Merge branch ''\''master'\''' into issue856. commit dcfc353bd086fe7cdd7f4c35c4b8f2556bcb8ae6 Author: Alan Garny '' Date: Mon Jun 13 10:19:30 2016 +1200 CellML support: can now detect a VOI no matter where it is defined in a model '(closes' '#995).' commit f814f8cf161ee0bb9102cb0e46ca565d73e0ee07 Author: Alan Garny '' Date: Mon Jun 13 10:17:12 2016 +1200 CellML support: a VOI can now be detected no matter where it is defined in a model '(closes' '#995).' commit 297c44f3d24282b500ed99f2183c3d101e065003 Author: Alan Garny '' Date: Sat Jun 11 17:00:50 2016 +1200 BioSignalML: some work on making the code style more in line with the rest of the OpenCOR code '(#856).' commit 8676aed546f213ecda6531151f0dddf706d5184e Author: Alan Garny '' Date: Sat Jun 11 16:44:20 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 289b92b4ac05a16a6546ff2854907c3abb39dab8 Author: Alan Garny '' Date: Sat Jun 11 16:20:00 2016 +1200 Have our various plugins properly reference their plugin dependencies. commit fb2b709594550fab99c7524157c5327e92a68314 Author: Alan Garny '' Date: Sat Jun 11 12:05:15 2016 +1200 Slight update to the developer documentation '[ci' 'skip].' commit 4d221dd61d54f8421a61a579981d837d080fc2cd Author: Alan Garny '' Date: Sat Jun 11 12:01:14 2016 +1200 QScintilla: applied official patch for '(Mac)' OS X issue '(closes' '#994).' commit 419b70681c07c83729a582f62cdce688019c144c Author: Alan Garny '' Date: Sat Jun 11 11:51:41 2016 +1200 QScintilla: some work on applying official patch for '(Mac)' OS X issue '(#994).' commit b8c03bd271c8bde84cc6ed806249f2a6031a81b5 Author: Alan Garny '' Date: Sat Jun 11 10:51:53 2016 +1200 Slight updates to the downloads page '[ci' 'skip].' commit 147199a1a6576c004b9ba600eb96cf8ab49a0611 Author: Alan Garny '' Date: Sat Jun 11 00:22:24 2016 +0200 CellML Text view: allow the import / export of the CellML Text format from / to CellML '(#992).' Make sure that this builds with MSVC on Windows. commit 7849cc37a9845f07acac61096755c6141258171c Merge: 1cce1ae3a 4e892e4e7 Author: Alan Garny '' Date: Sat Jun 11 09:58:01 2016 +1200 CellML Text view: allow the import / export of the CellML Text format from / to CellML '(closes' '#992).' commit 4e892e4e713e4e04b18685920a431858470fc16d Author: Alan Garny '' Date: Sat Jun 11 09:36:29 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format '(#992).' commit 0405c2bbd8e870bf7a8052de62cb3cdac977a7ec Author: Alan Garny '' Date: Sat Jun 11 09:32:44 2016 +1200 Slight improvement to the output of 'plugins'\''' help commands on the command line '[ci' 'skip].' commit 4a656df19581ce4fd347196941be6f780226437f Author: David Brooks '' Date: Fri Jun 10 17:18:32 2016 +0100 Undo temporary code... commit 398862eee92e455f3da85188960f178ea75dd5d0 Author: David Brooks '' Date: Fri Jun 10 17:18:14 2016 +0100 We 'mustn'\''t' delete contents of '`PmrExposureList`' and '`PmrWorkspaceList`' as other plugins may be using them... commit b6ef487d0745818b8bc8aeba42bbc078622f662a Author: David Brooks '' Date: Fri Jun 10 16:53:55 2016 +0100 '`PmrExposures`' has been renamed to '`PmrExposureList`.' commit a800301e4eb6b44aaa100fda2ff3c7deeea8b00b Author: David Brooks '' Date: Fri Jun 10 16:53:01 2016 +0100 Use '`Core::globalInstance()`' to provide a '`PmrRepository`' singleton. commit be189b29fa94edae81b1d2294118089862d5595e Author: David Brooks '' Date: Fri Jun 10 16:50:29 2016 +0100 Tidying up: a temporary file was committed... commit 76dee31747c7dd862e39197c852237a1a4b59ae0 Author: David Brooks '' Date: Fri Jun 10 16:48:07 2016 +0100 Use a unique name for 'PMRWindow'\''s' HTML template. commit 8264ef8bad18a8f3d6dca5b84da9253449fa1a03 Author: David Brooks '' Date: Fri Jun 10 16:47:13 2016 +0100 Tidying up: make '`PmrExposure`' a '`QObject`' and rename '`PmrExposures`' to '`PmrExposureList`.' commit f3a67971fe5a82b4698db5ca0b57e0e3f2c8cc49 Author: David Brooks '' Date: Fri Jun 10 16:41:47 2016 +0100 More work on PMR Workspaces window '(#969)' commit 97ce809bb3edaea2bfa173582145a201a210aa89 Author: Alan Garny '' Date: Fri Jun 10 18:19:55 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit bc4dbe25709062c49581bc78d31a23a58d8aeea0 Author: Alan Garny '' Date: Fri Jun 10 18:19:44 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format '(#992).' commit a789d224c1aa1303a1ef9062e5ea8d7574f4c815 Author: Alan Garny '' Date: Fri Jun 10 17:54:49 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 7436bbb63af2aa6120c6c05be83fd734ac0adac3 Author: Alan Garny '' Date: Fri Jun 10 17:40:43 2016 +1200 CellML Text view: some work on allowing the import / export of CellML from / to the CellML Text format '(#992).' commit 1cce1ae3ad58f68872b4a12dccc914315e5491d0 Author: Alan Garny '' Date: Fri Jun 10 17:39:13 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit c89a390b19866dc6eba501758c6cf56cff908aa4 Author: Alan Garny '' Date: Fri Jun 10 17:19:55 2016 +1200 CellML tools: 'don'\''t' ask for an output file when exporting from the command line '(closes' '#991).' commit cb4c3aa0f959f06a8da7e6cbbc571c3996958edb Author: Alan Garny '' Date: Fri Jun 10 16:30:53 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 6b1de06a9d38c8756b301ef44f0f94813ba303c3 Merge: 0786f68e6 494e7eca5 Author: Alan Garny '' Date: Fri Jun 10 15:40:29 2016 +1200 New third party binaries. commit 494e7eca55357651617d59c30aa123218a433b95 Author: Alan Garny '' Date: Fri Jun 10 14:36:50 2016 +1200 Generated new third-party binaries. commit 0786f68e6e7085eba56a3cb1489244a9cf86e891 Author: Alan Garny '' Date: Thu Jun 9 18:30:42 2016 +1200 Oops, forgot to unedited our main CMakeLists.txt file '[ci' 'skip].' commit 99f9cedd89d676934c0dec10d372065d73a8a5d1 Author: Alan Garny '' Date: Thu Jun 9 18:03:10 2016 +1200 Some work on generating new third-party binaries. commit bd699d7911dc8f9087af7e5320748efd5a9c71df Author: Alan Garny '' Date: Thu Jun 9 17:52:16 2016 +1200 Slight changes to the plugin descriptions '[ci' 'skip].' commit ced9eab207fd5ca8963be8c0b6b69991eb5b331d Author: Alan Garny '' Date: Thu Jun 9 15:32:50 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 7165c044cf2d1bcaa4c2681c2fe29aad2dd80934 Author: Alan Garny '' Date: Thu Jun 9 11:59:07 2016 +1200 New snapshots. commit 48dea519a5d7ab432c393e9680b3e51dc018369f Author: Alan Garny '' Date: Thu Jun 9 11:38:10 2016 +1200 CellML Text view: fixed a small problem with the serialising of numbers with an exponent '(closes' '#989).' Oops, forgot to update our CellML Text view 'tests!' commit 250e658df795ae305d24592920bd3a7e7ac06b89 Author: Alan Garny '' Date: Thu Jun 9 10:24:38 2016 +1200 CellML Text view: fixed a small problem with the serialising of numbers with an exponent '(closes' '#989).' commit 7e1a6abbac9399d508f8a24d9ba90fb0e93da055 Author: Alan Garny '' Date: Thu Jun 9 10:20:03 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 50323871de00cbe330ab8a95a05ac95841f1a242 Author: Alan Garny '' Date: Thu Jun 9 09:10:37 2016 +1200 Slight updates to the user documentation and downloads page '[ci' 'skip].' commit 212926d25201c7eb2ff92432b5271d1d08793e5e Author: Alan Garny '' Date: Wed Jun 8 18:07:33 2016 +1200 MathML viewer: fixed a small problem with numbers with an exponent not being properly rendered '(closes' '#988).' commit b574b68f96b3cab118e5177ff2df5fb6d4b75efe Author: Alan Garny '' Date: Wed Jun 8 16:44:52 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 1d80a502b6bcb485051a85a648506f7d2b142af7 Author: Alan Garny '' Date: Wed Jun 8 16:24:57 2016 +1200 CellML Text view: fixed a small problem with not all the metadata being serialised back '(closes' '#987).' commit 5f489b5d6e2ff72c11b6899395ba9c71844c2ada Author: Alan Garny '' Date: Wed Jun 8 16:20:20 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit fb45598f907b670a803af286e84a0ffa961af04e Author: Alan Garny '' Date: Wed Jun 8 15:22:00 2016 +1200 Single Cell view: improve the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980)' '[ci' 'skip].' Slight refactoring of commit 0e25c04. commit 63a5b14670f4e172d387bac3ee85d39a3a5c44a0 Author: Alan Garny '' Date: Wed Jun 8 14:50:29 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 0e25c04d1bd28216d936c1a73579aaf018c793e7 Author: Alan Garny '' Date: Wed Jun 8 14:45:53 2016 +1200 Single Cell view: improve the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980)' '[ci' 'skip].' Oops, we were always emitting a signal when 'setAxes()' was called while we should only have emitted it when 'setAxes()' was called as a result of a user interaction. commit 84a6c75cf6d8e1339d83c3571ed70f4e1c9f0c89 Author: Alan Garny '' Date: Wed Jun 8 14:31:21 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 5ea3c7d379a00bf835b2623a8fac5360cb865041 Author: Alan Garny '' Date: Wed Jun 8 14:05:05 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 819b8b4ebbd75f7d06ce2879f403e41ec8d8263d Author: Alan Garny '' Date: Wed Jun 8 09:27:39 2016 +1200 General: a 'plugin'\''s' resources should specify the ''\''prefix'\''' attribute to avoid name conflicts '#981' '[ci' 'skip].' Had forgotten to update the $'\342\200\230link\342\200\231' to the OpenCOR logo for the central widget. commit 6ea8be8248c1d9f03de660e197f8f8ec945271d6 Author: Alan Garny '' Date: Mon Jun 6 21:53:44 2016 +1200 Slight update to the user documentation '[ci' 'skip].' commit bea75a1460c002fce6e702a3d8d34be3ebee8810 Author: Alan Garny '' Date: Mon Jun 6 20:30:20 2016 +1200 Slight update to the user documentation '[ci' 'skip].' commit db932856c51ba22a61d2b481584770734c425f84 Merge: f06e0cb50 2b8cdad35 Author: Alan Garny '' Date: Fri Jun 3 19:29:47 2016 +1200 General: a 'plugin'\''s' resources now specify the ''\''prefix'\''' attribute to avoid name conflicts '(closes' '#981).' commit f06e0cb5005cac14f3b42609e1535dff468e2ba4 Author: Alan Garny '' Date: Fri Jun 3 19:14:55 2016 +1200 Slight update to our downloads page '[ci' 'skip].' commit 2b8cdad356ff4202c51f6730fefd59a3fbbe0116 Author: Alan Garny '' Date: Fri Jun 3 19:09:10 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 423c68d89dc3c9afe1a0199fb8d1b059120e5455 Author: Alan Garny '' Date: Fri Jun 3 19:03:42 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 4f583c9b401c2f937d9df289209f76d3c9719eb1 Author: Alan Garny '' Date: Fri Jun 3 18:54:25 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit d6ef1c992157c422a6ab038d0303dc06d7827a46 Author: Alan Garny '' Date: Fri Jun 3 18:52:36 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 753a69a2d1e2410f2232e7334a23c01b626d4ff6 Author: Alan Garny '' Date: Fri Jun 3 18:40:45 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 4e3aec1d834a718e772eebfde9b2b73bf54c4409 Author: Alan Garny '' Date: Fri Jun 3 18:40:24 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 3a6feca8c131dd62f291fa6cdd1eab8898c8f08f Author: Alan Garny '' Date: Fri Jun 3 18:34:32 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 98cba780259f22a29008bebde499cf1ad47bcbf6 Author: Alan Garny '' Date: Fri Jun 3 18:33:29 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 71f7b26e0fa5fc439a662f023bb14fbddf9b4ed3 Author: Alan Garny '' Date: Fri Jun 3 18:32:06 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit 97f003caaddda5ef02b762b336004c296072c148 Author: Alan Garny '' Date: Fri Jun 3 18:28:42 2016 +1200 General: some work on having a 'plugin'\''s' resources specifying the ''\''prefix'\''' attribute to avoid name conflicts '(#981).' commit ca4ddeaf51c3c8631a50e756e55799edc264f283 Merge: 3d71f7d26 34f420212 Author: Alan Garny '' Date: Fri Jun 3 16:40:37 2016 +1200 General: now centralise the Oxygen library images '(closes' '#982).' commit 34f420212e592839b48072d4135f843f8b165a67 Author: Alan Garny '' Date: Fri Jun 3 16:38:44 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 6267d311d6ffd8c4797ee7fe5a6a984d3cec83d3 Author: Alan Garny '' Date: Fri Jun 3 16:36:51 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 2b459258c858eed40a26395a47a62381ff7bfa50 Author: Alan Garny '' Date: Fri Jun 3 16:35:55 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 4e08e5b66767b2bc2cbc1830917d5937034c6b8c Author: Alan Garny '' Date: Fri Jun 3 16:34:42 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit d0631d330e335da815315d57e50c0ede787edda1 Author: Alan Garny '' Date: Fri Jun 3 16:32:17 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 0fde541530943001528af69c088a03528243f1f1 Author: Alan Garny '' Date: Fri Jun 3 16:25:46 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit b8f83fe12c07baec3a906094133c401c534fd357 Author: Alan Garny '' Date: Fri Jun 3 16:23:16 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit cb9ae9b9885af79cc5749ef31ea3a5ae2ed196fe Author: Alan Garny '' Date: Fri Jun 3 16:20:25 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit fba7d510c3c06a35d5dd24618d2162d5f2490a13 Author: Alan Garny '' Date: Fri Jun 3 16:18:40 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 0894be565ab07e6d9da53494c29334fd8824fe03 Author: Alan Garny '' Date: Fri Jun 3 16:15:57 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 2711a91277e37d38b4956e47570a2ab22fd9ce81 Author: Alan Garny '' Date: Fri Jun 3 16:13:59 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 8957069694e144358fa4a2a7ee267a5c82f80851 Author: Alan Garny '' Date: Fri Jun 3 16:13:44 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit eaef06904de361b2048e17b77d5989aab9e55b2c Author: Alan Garny '' Date: Fri Jun 3 16:10:15 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit b457d9e235d7fff89718bb6f54addf0256080197 Author: Alan Garny '' Date: Fri Jun 3 16:09:18 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 2d86fa15c58347f7ecf4c68c7e9f24f1bba2b169 Author: Alan Garny '' Date: Fri Jun 3 16:06:49 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 1914a70304972cd15be64b4867b0d5b1db098b12 Author: Alan Garny '' Date: Fri Jun 3 16:00:46 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 235d45f750eda5e70052b56e087518bae5f40865 Author: Alan Garny '' Date: Fri Jun 3 15:53:39 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 28efc2ff006a9874e2fed9e981afd8ef3ac8cb5e Author: Alan Garny '' Date: Fri Jun 3 15:53:16 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 45120e4206608771baf01d6c4cf25b26d3203a58 Merge: 0963fc785 3d71f7d26 Author: Alan Garny '' Date: Fri Jun 3 15:40:28 2016 +1200 Merge branch ''\''master'\''' into issue982. commit 3d71f7d2690e780f629b86533111e959c63dc34c Author: Alan Garny '' Date: Fri Jun 3 15:40:15 2016 +1200 Slight updates to the developer documentation '[ci' 'skip].' commit 0963fc78521c55a9028c4c928d14feb3a2de7e4c Author: Alan Garny '' Date: Fri Jun 3 15:31:33 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 6e1fedd8d79480d6845de346b572039a2ad9a21d Merge: cac861be3 4bf7ffc32 Author: Alan Garny '' Date: Fri Jun 3 15:30:01 2016 +1200 Merge branch ''\''master'\''' into issue982. commit 4bf7ffc325108660d114e0fa846fd4aeafecb701 Author: Alan Garny '' Date: Fri Jun 3 15:28:35 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit cac861be3da76f7e4bc90b67f358bac2875dc1e8 Merge: 4556e7a55 34352b5d1 Author: Alan Garny '' Date: Fri Jun 3 15:26:40 2016 +1200 Merge branch ''\''master'\''' into issue982. commit 34352b5d1e546214a6f8710d5de24d31059b189e Author: Alan Garny '' Date: Fri Jun 3 15:26:10 2016 +1200 Added all the flags from the Printable world flags library. So that we can refer to any of them without any problem. The idea is mainly to be on par with what we are going to do with the oxygen images '(see' issue '#982).' commit 4556e7a55a76dab217f8d212bfbdee294cd58f86 Author: Alan Garny '' Date: Fri Jun 3 13:46:26 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 27a7b78835594690c84068150e1acfcb2e141984 Author: Alan Garny '' Date: Fri Jun 3 13:46:15 2016 +1200 General: some work on centralising the Oxygen library images '(#982).' commit 11895a21ee9c46c9ad22373dc6cd1945ecc7956f Merge: 6c43d5e8a 01587d374 Author: Alan Garny '' Date: Fri Jun 3 11:47:25 2016 +1200 Merge pull request '#983' from opencor/issue980 Single Cell view: improved the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(closes' '#980).' commit 01587d374214a25fa9279a1844d4f69865a99728 Author: Alan Garny '' Date: Fri Jun 3 11:13:22 2016 +1200 Single Cell view: some work on improving the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980).' commit 761911e4560bf47962a6b5528ac07e4ffffb0567 Author: Alan Garny '' Date: Fri Jun 3 10:54:55 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 3fe2a3a37dd1ed90307a3726ed62fe9a9190957f Author: Alan Garny '' Date: Fri Jun 3 10:52:41 2016 +1200 Single Cell view: some work on improving the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980).' commit 6f4279a0354fd61bfa825ed9392d45c2f56ac821 Author: Alan Garny '' Date: Fri Jun 3 10:08:20 2016 +1200 Single Cell view: some work on improving the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980).' commit 60bc2caeca272a8e1712aeb3c443d7f77858922b Author: Alan Garny '' Date: Thu Jun 2 17:31:24 2016 +1200 Single Cell view: some work on improving the plotting of '(running)' simulation data when showing/hiding a graph, panning, scaling and zooming in/out '(#980).' commit 6c43d5e8ad7975a6b13418d8c827b3a1176fb926 Author: Alan Garny '' Date: Thu Jun 2 16:13:11 2016 +1200 Single Cell view: slight improvement to the alignment of graph panels '[ci' 'skip].' commit e68dddd96ea356ff6c029172954dd92c0da45edd Author: Alan Garny '' Date: Thu Jun 2 15:39:56 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 49f98be562f7d789d2c4eb3c9adc287bf733fce1 Author: Alan Garny '' Date: Thu Jun 2 15:31:10 2016 +1200 Some minor cleaning up '[ci' 'skip].' $'Can\342\200\231t' remember what was the reasoning for checking whether axes changed. What is certain is that it $'doesn\342\200\231t' look $'\342\200\230right\342\200\231.' For example, resetting the fact that axes have changed when clearing the 'graphs…!?' commit 9e108066be20c2bd6f0fbc57b56adcab61df190c Author: Alan Garny '' Date: Thu Jun 2 15:11:12 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit e304cedf5aaf2188e23084da8717691cfac83164 Author: Alan Garny '' Date: Thu Jun 2 15:05:04 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 5eec6f22272931feb4837152cc7a0e2a17d20fa0 Merge: d4d0ea577 9e93070d2 Author: David Brooks '' Date: Wed Jun 1 18:59:18 2016 +0100 Merge pull request '#979' from dbrnz/rename_output_html Rename HTML templates to avoid resource name conflicts '(#978)' commit 9e93070d225371e62fb6251aa3cdacdd6e32b32f Author: David Brooks '' Date: Wed Jun 1 15:17:57 2016 +0100 Rename HTML templates to avoid resource name conflicts '(#978)' commit d4d0ea577651c4daac23424ba170b8978f3b7040 Author: Alan Garny '' Date: Wed Jun 1 20:56:43 2016 +1200 Slight update to the downloads page '[ci' 'skip].' commit 0a2f9d5c460fd01ecd87081e626986d11d996b77 Author: Alan Garny '' Date: Wed Jun 1 20:35:54 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 98c5854df94b31588d11cb825fa2779b9fc53670 Author: Alan Garny '' Date: Wed Jun 1 20:03:39 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit c4546e6de4eba1d7381534b2363b0c90d69010ac Author: Alan Garny '' Date: Wed Jun 1 20:01:58 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit 4eb8a7508b916780e055bb21df521b42f31f7d8a Merge: 5b7820d4f 0c6959338 Author: Alan Garny '' Date: Wed Jun 1 19:56:19 2016 +1200 Rename WebViewWidget to WebViewerWidget and move it to its own plugin '(WebViewer' from the Core 'plugin)' '(closes' '#976).' commit 0c6959338a82b26cbe5f67e8339c9d3089c401f5 Author: Alan Garny '' Date: Wed Jun 1 19:37:40 2016 +1200 Some work on renaming WebViewWidget to WebViewerWidget and move it to its own plugin '(WebViewer' from the Core 'plugin)' '(#976).' commit 81704d8e672b967c56826db96f8c7f645f89154b Author: Alan Garny '' Date: Wed Jun 1 19:20:57 2016 +1200 Some work on renaming WebViewWidget to WebViewerWidget and move it to its own plugin '(WebViewer' from the Core 'plugin)' '(#976).' commit 41f2744ba019b0f2a13a0a3a2d45d9da0b3a8947 Author: Alan Garny '' Date: Wed Jun 1 18:47:11 2016 +1200 Some work on renaming WebViewWidget to WebViewer and move it to its own plugin '(from' the Core 'plugin)' '(#976).' commit 5b7820d4f270d42cf703dd0835d5aa06a9a92b39 Merge: 9c26947a3 8e64f2d4e Author: Alan Garny '' Date: Wed Jun 1 17:38:52 2016 +1200 Updated the binaries of our different third-party plugins '(closes' '#973).' commit 8e64f2d4e80f5ad2726cffcb12a80c3796ff2fab Author: Alan Garny '' Date: Wed Jun 1 16:52:14 2016 +1200 Some work towards updating the binaries of our different third-party plugins '(#973).' commit c53f7db5b0ed79bd94d30db5a789b201e9ee98d9 Author: Alan Garny '' Date: Wed Jun 1 16:44:47 2016 +1200 Some work towards updating the binaries of our different third-party plugins '(#973).' commit 039f29210df34770fe48014ed8c69c1e5bb1d837 Merge: 53a03718a 9c26947a3 Author: Alan Garny '' Date: Wed Jun 1 15:54:08 2016 +1200 Merge branch ''\''master'\''' into issue973. commit 9c26947a3534e61876b85d9f391438a101c9e5bd Author: Alan Garny '' Date: Wed Jun 1 15:51:53 2016 +1200 Travis CI: allow the CI of the qt5.6 branch '[ci' 'skip].' commit 53a03718a88f10506a04c63d8066d0bdb5d3a758 Author: Alan Garny '' Date: Wed Jun 1 14:04:03 2016 +1200 Some work towards updating the binaries of our different third-party plugins '(#973).' commit f4ef0c7dda64952ea9a23d3fb604e1c3dba997c1 Author: Alan Garny '' Date: Wed Jun 1 13:34:30 2016 +1200 Slight update to our downloads page '[ci' 'skip].' commit 66e975c5b17640b800892ea20a05f34fc2aadf4b Author: Alan Garny '' Date: Wed Jun 1 13:29:28 2016 +1200 Some minor cleaning up '[ci' 'skip].' commit ce30c2683d28a7a51b8c573894cc063c6ae3c56f Merge: 1e9b059a6 bf50ae6ee Author: Alan Garny '' Date: Wed Jun 1 13:11:47 2016 +1200 Qt: upgraded to version 5.5.1 '(closes' '#971).' commit bf50ae6ee91fb441e30f943a92b4eda2d24a5b33 Author: Alan Garny '' Date: Wed Jun 1 12:52:21 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' Addresses the issue about the Single Cell view: to simulate the N62 model with one or several graphs and with, for example, a 200,000 slow down results in the plotting area repeatedly becoming black. This time, we have a proper fix. Indeed, to disable the temporary event filter $'wasn\342\200\231t' the right approach since it resulted in the whole plotting area being repainted. It was $'\342\200\230fine\342\200\231' on my development machine '(OS' X '10.11),' but not on a vanilla OS X 10.8-10.10 machine where plotting 1,000,000 data points resulted in chunks of data points being plotted at $'once\342\200\246' The $'\342\200\230new\342\200\231' fix consists of setting the CopyBackingStore attribute to true. This has a slight disadvantage which is that the backing store is constantly copied over to the canvas, but at least it works as expected on both my development machine and OS X 10.8-10.10. commit 11d400003dfe985c60e23a113b1ec3c3c06c98a9 Author: David Brooks '' Date: Tue May 31 19:36:01 2016 +0100 Save work-in-progress... commit 155c3e4993924a8a7012972100076645c286a17a Author: Alan Garny '' Date: Tue May 31 17:54:36 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' Addresses the issue about the Single Cell view: to simulate the N62 model with one or several graphs and with, for example, a 200,000 slow down results in the plotting area repeatedly becoming black. commit 005b6f17111c6250e4fa99401c1277a034b0f423 Author: Alan Garny '' Date: Tue May 31 16:01:34 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit cc919bf6c7e99256137c6be73b9d53dbe1711d3a Author: Alan Garny '' Date: Tue May 31 11:36:20 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' Addresses the issue about the CellML Text view '(to' edit, say, the N62 model results in one or two black lines flashing 'repeatedly).' commit af34f069b11cfc50844e9e6fc92a847737785e48 Author: Alan Garny '' Date: Tue May 31 11:32:11 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit a9ebe9c4ae641a3caabc19773a756fca6057bf88 Author: Alan Garny '' Date: Tue May 31 11:29:38 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' Addresses the issue about the CellML Text view '(to' edit, say, the N62 model results in one or two black lines flashing 'repeatedly).' commit d2f8d2c4ee16e343b83e4df53e338460dde42b69 Author: David Brooks '' Date: Mon May 30 17:51:40 2016 +0100 'There'\''s' no need to expose all of '`PmrRepository`...' commit 8177c1050c06ad8fb593f97391477744d9f17b5e Author: David Brooks '' Date: Mon May 30 17:50:48 2016 +0100 Share a single '`PmrRepository`' instance amongst different plugins. commit 22ccc4f8d982fc7b7e43575a05ab4566ac01f3b4 Author: David Brooks '' Date: Mon May 30 17:45:10 2016 +0100 Add icons for closed and open workspacee. commit 4ca03b8364f5363038061ba4f8df9a98c2b6c2cb Author: Alan Garny '' Date: Mon May 30 16:34:28 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' For some reasons, 'qobject_cast<>()' $'doesn\342\200\231t' work '(anymore?)' on Linux, which means that we cannot test for 'object->inherits()' anymore $'either\342\200\246' commit 2d3d69c24e389e04f5411d416c52e78b25b0a729 Author: Alan Garny '' Date: Mon May 30 15:27:47 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 6954fa165bed6a551db0378fd22d9b060b0bf487 Author: Alan Garny '' Date: Mon May 30 15:05:23 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 5b1d2f2f7ad56925996a8d341b688eaa1207049a Author: Alan Garny '' Date: Mon May 30 13:58:54 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 6aac4fe3d45c942e61e3f46f3ea31ad46fee7b9d Author: Alan Garny '' Date: Mon May 30 13:55:12 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 049c5c9297fa8d0d95aa34dee4175033075fb1d4 Author: Alan Garny '' Date: Mon May 30 11:48:53 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 5a76da2ee1ca8c758acbf6184edd72b2950da3bd Author: Alan Garny '' Date: Mon May 30 11:38:12 2016 +1200 Qt: some work towards upgrading to version 5.5.1 '(#971).' commit 1e9b059a631f00035de5d82249d3fc7822287ac3 Author: Alan Garny '' Date: Mon May 30 11:08:18 2016 +1200 jQuery: upgraded to version 2.2.4 '(closes' '#970).' commit 53337a63548d8698cf34b0fcbe79ecbc5af60273 Author: Alan Garny '' Date: Mon May 30 08:47:26 2016 +1200 New snapshots. commit 89a69a1b2da60dacae5a5cb65c8da3fa219c4917 Author: Alan Garny '' Date: Mon May 30 08:46:58 2016 +1200 Slight update to the user documentation '[ci' 'skip].' commit a3a4622936fd63a14629eff9413bb58d82b1a92e Author: Alan Garny '' Date: Sat May 28 22:53:30 2016 +1200 LLVM: fixed a small problem on Windows when in debug mode '(related' to issue '#913).' Finally found the cause '(and' 'fix)' of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: 'C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll' File: 'C:\Program' Files '(x86)\Microsoft' Visual Studio '12.0\VC\INCLUDE\xutility' Line: 2796 commit 7c1ba93d8104a0ca312feb3628085dae2c8a09f1 Author: Alan Garny '' Date: Sat May 28 22:36:31 2016 +1200 LLVM: fixed a small problem on Windows when in debug mode '(related' to issue '#913).' Finally found the cause '(and' 'fix)' of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: 'C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll' File: 'C:\Program' Files '(x86)\Microsoft' Visual Studio '12.0\VC\INCLUDE\xutility' Line: 2796 Expression: invalid null pointer commit 38b22556f182a5ee50f39497457aab62127717d9 Author: David Brooks '' Date: Wed May 25 20:24:45 2016 +0100 Always pass network 'reply'\''s' '`NameProperty`' when calling '`sendPmrRequest()`.' commit 1fd352002cdf9644e7cdf6179c138cce4cc2f36b Author: David Brooks '' Date: Wed May 25 20:22:23 2016 +0100 '`Url`' method name should all be in lowercase. commit 0ef27c3099b4333e187b00078171fa21da561bdc Author: David Brooks '' Date: Wed May 25 20:20:09 2016 +0100 Define a '`PmrWorkspace`' class and use it to clone a workspace '(#969)' commit 19788db486de15824718f200252b63458aaefe83 Author: David Brooks '' Date: Wed May 25 20:06:21 2016 +0100 First version of a plugin to provide a PMR Workspace window '(#969)' commit 1fa76722b1012a69ec186fdd696a2c32c61b0377 Author: David Brooks '' Date: Wed May 25 15:47:01 2016 +0100 Extend '`PmrRepository`' to include authentication. commit 29ed75511880c43536da14597690b14432784ea8 Author: David Brooks '' Date: Wed May 25 15:28:25 2016 +0100 Signal connection parameter type was wrong. commit 7c434e3ba3dad0207cfad4ed1c089deecc374232 Author: Alan Garny '' Date: Tue May 24 18:31:10 2016 +0200 LLVM: fixed a small problem on Windows when in debug mode '(related' to issue '#913).' Finally found the cause '(and' 'fix)' of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: 'C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll' File: 'C:\Program' Files '(x86)\Microsoft' Visual Studio '12.0\VC\INCLUDE\xutility' Line: 2796 Expression: invalid null pointer commit 7c809d4df75c3d553ab4eb7be3f01ec72a4768fd Author: David Brooks '' Date: Tue May 24 16:35:44 2016 +0100 Use OAuth plugin to authenticate against a PMR instance '(#969).' commit 0420daa6359cfd344d7fd8fdf13af4bf7f0ff95a Author: Alan Garny '' Date: Tue May 24 16:45:52 2016 +0200 LLVM: fixed a small problem on Windows when in debug mode '(related' to issue '#913).' Finally found the cause '(and' 'fix)' of the problem that resulted in the debug version of OpenCOR crashing when switching to the Single Cell view. FWIW, the message was: Program: 'C:\Users\Alan\Desktop\OpenCOR\build\MSVCP120D.dll' File: 'C:\Program' Files '(x86)\Microsoft' Visual Studio '12.0\VC\INCLUDE\xutility' Line: 2796 Expression: invalid null pointer commit b14b30bb74c98658a29cba40c21ca5c9c5a44d99 Author: Alan Garny '' Date: Tue May 24 15:37:01 2016 +0200 Some cleaning up of the user and developer documentations '[ci' 'skip].' commit 21eae63b657488c28d942ec8a7f7add6da8f13b6 Author: Alan Garny '' Date: Mon May 23 19:06:48 2016 +0200 Standard file manager: fixed a problem with wrongly deleting some file objects. Indeed, our StandardFileManager class would delete all the objects held by mFiles, but it $'shouldn\342\200\231t' have. People should just ensure that things are being unmanaged. The end result is that when we were, for example, trying to export a CellML file to C from the command, the export itself would work fine, but then OpenCOR would crash on $'exit\342\200\246' commit 4b6f9afdf9bb057ee8e2b71eb2840fac394fc6b1 Author: Alan Garny '' Date: Mon May 23 17:04:27 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 298bb04084175feb967043aef5b94f562746d489 Author: Alan Garny '' Date: Mon May 23 16:10:59 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 94968652396b452e7201ef39d1b9d82f8b964ac5 Author: Alan Garny '' Date: Mon May 23 16:08:51 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 35a2bd839e2b6621f2c92cd4dd734cebe0ae3faf Author: Alan Garny '' Date: Mon May 23 14:09:39 2016 +0200 COMBINE support: improved our tests. commit 15ee993519b973b41df2a725419c52d1d90acd85 Author: Alan Garny '' Date: Mon May 23 12:57:14 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0b9afea9156ca82265148f66234f40b324eb5afc Merge: 7c401c7f9 6e323b7dd Author: David Brooks '' Date: Sun May 22 11:42:03 2016 +0100 Merge branch ''\''master'\''' into pmrworkspace commit 6e323b7dd5bc43298feff88830cfaa5a2caf8a25 Merge: 65a8d58fd c0bfa4c3d Author: David Brooks '' Date: Sun May 22 11:06:08 2016 +0100 Merge pull request '#968' from dbrnz/stripped Rationalise names of BioSignalML libraries commit c0bfa4c3d0c106cb630a432ed0c2a370c81a797b Author: David Brooks '' Date: Sun May 22 10:44:16 2016 +0100 Rationalise names of BioSignalML libraries and use stripped versions '(#954)' commit 65a8d58fdf1030813ec1ea9795b844dd7a56deb3 Author: Alan Garny '' Date: Fri May 20 15:44:25 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 376f3dd014cdf319362d0b919a3c48e71edff1e6 Merge: 00c09a7a3 da2656856 Author: Alan Garny '' Date: Fri May 20 15:36:38 2016 +0200 CMake: simplify the deployment of 'plugins'\''' external binaries '(closes' '#966).' commit da265685627f55ef0481ff2f0def96592a51fcfa Author: Alan Garny '' Date: Fri May 20 14:45:12 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 1a868dd148415c0bdc13a00f502cffa3d0c72bb6 Author: Alan Garny '' Date: Fri May 20 14:22:23 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit decb8a6d757330ad00b8471b3c631c9af9e7461c Author: Alan Garny '' Date: Fri May 20 13:53:43 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit c46d91422bacd5b8e271c4502a906e0af395181f Author: Alan Garny '' Date: Fri May 20 13:50:03 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit cbcbd5823143f206ffd6ac0e9ff6abd15b56020f Author: Alan Garny '' Date: Fri May 20 13:27:58 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 6b56d4aa0883d30db6ea377c19c88948b40f35ac Author: Alan Garny '' Date: Fri May 20 13:23:53 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 905dfd064ec062462bb139041e4e3ffe8e730d59 Author: Alan Garny '' Date: Fri May 20 13:22:34 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 4b6bdbc998dbc3b9b95835d2ef044b30c0a80d95 Author: Alan Garny '' Date: Fri May 20 13:00:37 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 2fafcab4dbf9f2cf8fd1d2220f6516f58c6681d1 Author: Alan Garny '' Date: Fri May 20 11:56:07 2016 +0200 CMake: some work on simplifying the deployment of 'plugins'\''' external binaries '(#966).' commit 00c09a7a3551b2f7578bf48eaa2c6d08e6d65146 Author: Alan Garny '' Date: Thu May 19 18:35:05 2016 +0200 Added support for Ubuntu 16.04 LTS '(closes' '#965).' commit 7f7a2612be5ef4f0593c80958d59b2e5e0d4b2fd Author: Alan Garny '' Date: Thu May 19 17:14:02 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 7c401c7f924cbfebd6abfed4942ef9bf90fe9a79 Author: David Brooks '' Date: Thu May 19 16:03:02 2016 +0100 Remove unnecessary '#includes.' commit b29abaec760b39e2a9d284c3595fc458beee8eb1 Author: David Brooks '' Date: Thu May 19 15:58:53 2016 +0100 Add '`o2`' OAuth library as a plugin '(to' use for PMR 'authentication)' commit dc42aaf0beb2d7fd54faca52db78f49ca7c54e54 Author: David Brooks '' Date: Thu May 19 15:43:56 2016 +0100 Rename '`PmrWebService`' to '`PmrRepository`.' commit ee458c51e91cd99be0862045fc348d48bd8ab197 Author: Alan Garny '' Date: Thu May 19 14:56:51 2016 +0200 IDA solver: make sure that we compute the root information before computing the essential variables and then residuals '[ci' 'skip].' commit 3acbd895debd9af937550fe1f9431fea3072831a Author: Alan Garny '' Date: Thu May 19 14:55:27 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 5748f2e1558aa0672b701dcca46f5539bd5b500d Author: Alan Garny '' Date: Thu May 19 13:43:16 2016 +0200 Slight update to the user documentation '(related' to issue '#965)' '[ci' 'skip].' commit 956e93f64c37f61640ecd937564aa7b4e7c9cfaa Author: Alan Garny '' Date: Thu May 19 11:56:14 2016 +0200 Raw CellML view: only display an information message when necessary '[ci' 'skip].' This is when a CellML 1.1 model has some issues. We only want to let the user know that the issues might be in one of the imported file if there are indeed imported $'files\342\200\246' commit e76419d09931bf85c554b5fb9cc590e56f37f82c Merge: edf782b6b 639dec657 Author: Alan Garny '' Date: Wed May 18 14:16:34 2016 +0200 LLVM: upgrade to version 3.8.0 '(closes' '#913).' commit 639dec6579d05c52fd65b89cfe069c7ce5a83858 Author: Alan Garny '' Date: Wed May 18 13:58:08 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 95ba4d0f8fa0752ca1f2d8bf0ab8468c67522566 Author: Alan Garny '' Date: Wed May 18 13:55:30 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit df17c4c54257e798d6a2fdda91b5747a746f2e33 Merge: 1b385abdd edf782b6b Author: Alan Garny '' Date: Wed May 18 13:52:09 2016 +0200 Merge branch ''\''master'\''' into issue913. commit edf782b6b8a968991dbf4eb7365812e285a5e215 Author: Alan Garny '' Date: Wed May 18 13:46:02 2016 +0200 Travis CI: trying to re-enable Linux CI. commit 1b385abdde3669ff8a6d2012c1925544d711d0b7 Author: Alan Garny '' Date: Wed May 18 11:44:33 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit b0165d4a7d4cdb8d3e171dd9e296f0007a4259c4 Author: Alan Garny '' Date: Tue May 17 18:50:46 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit f31e2e2f4458c1d45bf736db56502b0cfb81f8c1 Author: Alan Garny '' Date: Tue May 17 15:19:59 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit cdfd106d204565170997ba2e4fd9a5e44a0928af Merge: 261001ebd 44dc5d204 Author: Alan Garny '' Date: Tue May 17 14:23:02 2016 +0200 Merge branch ''\''master'\''' into issue913. commit 44dc5d204a884381e73cfeca41b74abe86440017 Author: Alan Garny '' Date: Tue May 17 14:08:21 2016 +0200 Travis CI: some debug traces for the COMBINESupport tests. commit b44a9a737cc2f145c7af7e0d2072427763e058da Author: Alan Garny '' Date: Tue May 17 13:50:34 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 261001ebd3ae08679626a0ada32bf3a393ee8e83 Author: Alan Garny '' Date: Tue May 17 12:53:59 2016 +0200 Merge branch ''\''master'\''' into issue913. commit 692dbffba7f64cd1e62f38c048d025ab3f86484d Merge: 7eaadea65 4026e27f2 Author: Alan Garny '' Date: Tue May 17 12:48:59 2016 +0200 Merge pull request '#963' from opencor/issue962 Copyright: replaced '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(closes' '#962).' commit 4026e27f2a27a6de7790bd478513e8fcd8ce9d3d Author: Alan Garny '' Date: Tue May 17 11:09:50 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' Ok, none of the $'\342\200\230fixes\342\200\231' found for the problem described at https://github.com/travis-ci/travis-ci/issues/6048 work, giving up for now by temporarily disabling Linux CI. commit 4e25d237998be74fba30ffd3b125f0da9df97b41 Author: Alan Garny '' Date: Tue May 17 11:01:31 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' Hmm, for some reasons we are now getting the problem described at https://github.com/travis-ci/travis-ci/issues/6048. So, we are $'\342\200\230fixing\342\200\231' it $'here\342\200\246' commit db8091eb575409a2f36d3a807355b3cead18a42b Author: Alan Garny '' Date: Tue May 17 10:48:14 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' Hmm, for some reasons we are now getting the problem described at https://github.com/travis-ci/travis-ci/issues/6048. So, we are $'\342\200\230fixing\342\200\231' it $'here\342\200\246' commit 0e2389361f254e07eaec9a9fc32f3759179dd5e0 Author: Alan Garny '' Date: Tue May 17 10:27:16 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' Hmm, not sure why that .orig file $'didn\342\200\231t' get deleted during the $'patching\342\200\246' commit d17970da1e4d8452710b7d7ad70e4de59ff9cb4e Author: Alan Garny '' Date: Tue May 17 10:24:39 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' commit a6c3b9a63460b1ba833e617a17f2151ad4e271b0 Author: Alan Garny '' Date: Tue May 17 10:17:30 2016 +0200 Copyright: some work towards replacing '"OpenCOR' 'team"' with '"University' of 'Auckland"' '(#962).' commit cd4c1adb28ebbe665b15b18582be93dde57b766e Author: Alan Garny '' Date: Mon May 16 20:46:34 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 2d0911f80d0e054769511b48ed0e38683f88e7f0 Merge: 86df80082 7eaadea65 Author: Alan Garny '' Date: Mon May 16 19:31:27 2016 +0200 Merge branch ''\''master'\''' into issue913. commit 7eaadea65d6be8968db012ad74f8200b1542f99e Author: Alan Garny '' Date: Mon May 16 19:30:21 2016 +0200 Some minor cleaning up. Hmm, we could only build using $'ninja\342\200\246' commit 86df80082dabd96843c5d1e507e07d20e73fdc32 Author: Alan Garny '' Date: Sat May 14 20:46:27 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 1a1e6a3120ed823762e2d097685c440536fb35f9 Author: Alan Garny '' Date: Sat May 14 07:36:15 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit e98d8e1474fb4f96eac68b01cc53060a65118947 Author: Alan Garny '' Date: Fri May 13 16:51:35 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 6e0aa8d872953b1dda130c192d7f1ae6d1ce3ab5 Author: Alan Garny '' Date: Fri May 13 13:31:43 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit fd57d2da88242c698c1bb27b35541df4b7b04592 Merge: 128ec3b78 ef367ad33 Author: Alan Garny '' Date: Fri May 13 10:42:37 2016 +0200 Merge branch ''\''master'\''' into issue913. commit ef367ad33b57bfcbe57171632ecdcaa751c2b5db Author: Alan Garny '' Date: Fri May 13 10:42:05 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 128ec3b780a20b0564276b68277010bf429ea5a9 Author: Alan Garny '' Date: Fri May 13 10:32:52 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 285aea121afb3b3f1760120d2ab9777e65a40dee Author: Alan Garny '' Date: Fri May 13 09:50:59 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit f3d9eb246fc20bb83a84615e370f3b63563c9f81 Merge: 3339f5daf 512e5839e Author: Alan Garny '' Date: Fri May 13 09:33:10 2016 +0200 Merge branch ''\''master'\''' into issue913. commit 512e5839ebeb6359c1f780f382455a833c85e5fb Author: Alan Garny '' Date: Fri May 13 09:32:30 2016 +0200 Ensure that our NOTICE.txt file always has the correct copyright year information. commit 3339f5daf09af057f215a3d6e9adcc93159de5d8 Author: Alan Garny '' Date: Thu May 12 16:45:41 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 521954a7275fa7fab61dfd27f8f43a20d41f962d Author: Alan Garny '' Date: Thu May 12 14:07:10 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit 32cea76dc70b69c6625976a964297c89c005d27f Author: Alan Garny '' Date: Thu May 12 13:56:27 2016 +0200 LLVM: some work towards upgrading to version 3.8.0 '(#913).' commit c15e97913877e39efa2ede7acdc8a119b311a74a Author: Alan Garny '' Date: Thu May 12 13:41:15 2016 +0200 Slight update to our common CMake file. commit 55a64369f13a1448c931253f85d48580b5c0ed90 Author: Alan Garny '' Date: Thu May 12 10:05:02 2016 +0200 Slight updates to our developer documentation '[ci' 'skip].' commit 22f1d99f2644419487baa174ae97510e489b37d4 Author: Alan Garny '' Date: Wed May 11 19:14:21 2016 +0200 Slight updates to the developer documentation '[ci' 'skip].' This follows a request from @dbrnz to add more information on how to internationalise an OpenCOR plugin '(see' pull request '#950).' commit f603ffeb90ae5b6cde83f396c34de662af9730a5 Author: Alan Garny '' Date: Wed May 11 18:25:07 2016 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit f4d2bc9d40cb04097949759f1f5a8283851c27cd Author: Alan Garny '' Date: Wed May 11 18:24:44 2016 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit 70d06a2914f586809d1c8c3ca4815f70a6a81bba Author: Alan Garny '' Date: Wed May 11 16:51:00 2016 +0200 Slight updates to our developer documentation '[ci' 'skip].' commit 4db9f2cebcab542381bbd38218acb4abc4e006d3 Merge: 4d89662e0 57ffa5382 Author: Alan Garny '' Date: Wed May 11 15:29:14 2016 +0200 libSBML: upgraded to version 5.13.0 '(closes' '#949).' commit 57ffa5382c971e95b158243baa085ad9a364cd4d Author: Alan Garny '' Date: Wed May 11 15:08:30 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit 5a22339fbcc73f4d09c305327e1ef870837a2c62 Author: Alan Garny '' Date: Wed May 11 15:07:54 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit fce7ef1475f641e96566d232398411930fd64a06 Author: Alan Garny '' Date: Wed May 11 14:13:05 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit c013ebf54c477b17556e7a783124d033259221f5 Author: Alan Garny '' Date: Wed May 11 14:09:58 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit dcb0287a42f6d13946b1c230a090dd20d620a598 Author: Alan Garny '' Date: Wed May 11 14:08:26 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit b9a84913440ccb8b2122216fd3d15d5d8c493f22 Author: Alan Garny '' Date: Wed May 11 11:53:20 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit 7dd1862913405bbf9eda07a2361c5a20c557165c Author: Alan Garny '' Date: Wed May 11 10:31:43 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit 6f6cbb8ff1682ec27ced88a68336cf91c969c4a3 Author: Alan Garny '' Date: Wed May 11 10:25:39 2016 +0200 libSBML: some work towards upgrading to version 5.13.0 '(#949).' commit 4d89662e0c756be057ec25c6adf56f5c1e1cd9f0 Merge: e6b5090ea 04efeba2f Author: Alan Garny '' Date: Tue May 10 19:31:43 2016 +0200 QScintilla: upgraded to version 2.9.2 '(closes' '#947).' commit e6b5090ea09936aa4ad47002540f6eed80c23e31 Author: Alan Garny '' Date: Tue May 10 19:05:16 2016 +0200 Travis CI: some debug traces for the COMBINESupport tests. commit 04efeba2f114e86b7b1a17b80245221ec25bb72c Author: Alan Garny '' Date: Tue May 10 18:45:26 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 '(#947).' commit c8790bb56c8442a6f590fae4b8747f3bb9606224 Author: Alan Garny '' Date: Tue May 10 18:26:49 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 '(#947).' commit e81823a782b2be8e94799a534adeacc9d87d5389 Author: Alan Garny '' Date: Tue May 10 18:25:50 2016 +0200 QScintilla: some work on upgrading to version 2.9.2 '(#947).' commit 91fe8e41d713a2918430e0b84eed669a12874d65 Author: Alan Garny '' Date: Tue May 10 17:31:10 2016 +0200 Slight update to some documentation '(related' to issue '#953)' '[ci' 'skip].' commit 2a16be3594fb92eb6cb8fa65ad7aeb7815159ed0 Author: Alan Garny '' Date: Tue May 10 17:22:33 2016 +0200 KaTeX: upgraded to version 0.6.0 '(closes' '#948).' commit f4aa18f02709c8478bf833a1258eb5b290aa9823 Author: Alan Garny '' Date: Tue May 10 17:14:33 2016 +0200 OpenSSL: upgraded to version 1.0.2h '(closes' '#956).' commit 121fddecae58618e1d2c95b8a17d51e49b918904 Author: Alan Garny '' Date: Tue May 10 11:52:12 2016 +0200 Some minor cleaning up and slight refactoring following the merge of pull request '#950' from dbrnz/pmrsupport. commit 94adc8c8d965603391f28a15dc8acfc836640465 Author: Alan Garny '' Date: Mon May 9 18:52:45 2016 +0200 Have '"Physiome' Model 'Repository"' as title of the PMR window '(closes' '#958).' commit 3b3c365a97f8c62a273eb4ae55af460fe2f1e9ae Author: Alan Garny '' Date: Mon May 9 18:06:55 2016 +0200 Some minor cleaning up and slight refactoring following the merge of pull request '#950' from dbrnz/pmrsupport. commit 1e0e780bb9db7184849e0652f71eb7d9f9c3f3a4 Author: Alan Garny '' Date: Mon May 9 17:57:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit aa66e78ea92e94fa968e6120415a575f2e6f6c7d Author: Alan Garny '' Date: Mon May 9 16:53:36 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b30f132673d4e390ad6b41112ede8fa2511cbafc Author: Alan Garny '' Date: Mon May 9 16:14:55 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 227c3deb4f23f9654182870457545718263ee87c Merge: bc135c9de ddc6d81cc Author: Alan Garny '' Date: Mon May 9 15:58:43 2016 +0200 Merge pull request '#950' from dbrnz/pmrsupport Separate out PMR web service interface into its own plugin '(closes' '#931).' commit ddc6d81cceaca57ce2dd64438ee0460991ba2321 Author: David Brooks '' Date: Fri May 6 11:06:32 2016 +0200 Miscellaneous code tidy '(#931)' commit 8e4ef20482c94656779867eab3a0f8591fee64cc Author: David Brooks '' Date: Fri May 6 11:05:36 2016 +0200 Correctly describe the PMRSupport plugin. commit ec0da4914c13eae9b97b186e831b55a8831df10f Author: David Brooks '' Date: Fri May 6 11:00:51 2016 +0200 '`PmrWindowWidget::showExposureFiles`' is now a public slot. commit 4ff96f816ff04c69973f172f9e0618af605ea2df Author: David Brooks '' Date: Fri May 6 10:58:16 2016 +0200 Export '`PmrExposure`' for Windows DLL. commit 12a8e17888fd4d40dc3466a395feea169aad1290 Author: David Brooks '' Date: Fri May 6 10:56:36 2016 +0200 Correctly specify note to be added to information messages. commit 7f7e6573c0958c79963f84847bf779df8b314f9f Author: David Brooks '' Date: Fri May 6 10:20:36 2016 +0200 Support internationalisation in the PMRSupport plugin and move appropriate messages from the PMRWindow plugin '(#931)' commit 3a36dc9b31d9e7c5b94e0d20873bb1178ca4953b Author: David Brooks '' Date: Thu May 5 16:07:12 2016 +0200 The PMRSupport plugin 'doesn'\''t' need the PluginInterface '(#931)' commit 805675eb55acb0b595640b2f0815511c3ccbb5d7 Author: David Brooks '' Date: Thu May 5 16:05:02 2016 +0200 Tidy up warning and information response code from PMR web service '(#931)' commit 0e3e3260a8c3782d5939cf274c6f1999da199c5e Author: David Brooks '' Date: Thu May 5 16:00:41 2016 +0200 Exposures are now managed by the PMRSupport plugin '(#931)' commit 8dcfd8798348b0dd5fdc595cd1facddd14239a6e Merge: df66a3426 bc135c9de Author: David Brooks '' Date: Thu May 5 12:19:12 2016 +0200 Merge branch ''\''master'\''' into pmrsupport Conflicts: src/plugins/organisation/PMRWindow/src/pmrwindowwindow.cpp commit bc135c9de71cc3612923d579e9dcb8f47749db86 Author: Alan Garny '' Date: Wed May 4 16:45:56 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit d76d75fd314937c3bb30f306e4f4334f125a11a2 Author: Alan Garny '' Date: Wed May 4 11:49:54 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit c0efa07861c8c4d449f0ce192990a5471af062c3 Author: Alan Garny '' Date: Wed May 4 11:49:31 2016 +0200 Slight update to the developer documentation following the release of Xcode 7.3.1 '[ci' 'skip].' commit ad71f11af345873d84c850d6715752acee9ba1b6 Author: Alan Garny '' Date: Mon May 2 11:47:54 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 80b90f3ef9e7b75b0f168c076a7cbdde7bfe8e0b Author: Alan Garny '' Date: Fri Apr 29 19:44:40 2016 +0200 CellML Annotation view: slight CSS improvements '[ci' 'skip].' commit e09600bec58f05653b5c7643ff50b97c31c0bdff Author: Alan Garny '' Date: Thu Apr 28 19:09:09 2016 +0200 UserMessageWidget: re-enabled text interaction '[ci' 'skip].' Indeed, without it, we $'couldn\342\200\231t' click on a link anymore '(e.g.' to remove the existing metadata of a CellML element in the CellML Annotation 'view).' commit e9f1cd1980d60323c8f4cc68505453669786254f Author: Alan Garny '' Date: Thu Apr 28 19:01:19 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 692bf0dd9da48bf3da70ed5d405f206594266b05 Author: Alan Garny '' Date: Thu Apr 28 15:28:33 2016 +0200 Travis CI: enable version branches. commit d9471ea8577c15a5108bc78a61daf6a2640ccfda Author: Alan Garny '' Date: Wed Apr 27 19:01:35 2016 +0200 Travis CI: only have it work for the master branch. Indeed, it just takes too long otherwise when we work on a branch and then want to merge it through a PR. commit d8acba5dd1d2f9b3bad9793019964a7f5617fc36 Merge: c7fb9e1bf b99eb5e3b Author: Alan Garny '' Date: Wed Apr 27 18:58:06 2016 +0200 Merge pull request '#955' from opencor/issue953. Linux / OS X external binaries should be stripped off their non-global symbols '(closes' '#953).' commit b99eb5e3ba62cb5d5479a05422840b9bd8699adc Author: Alan Garny '' Date: Wed Apr 27 18:07:39 2016 +0200 Linux / OS X external binaries are now stripped off their non-global symbols '(#953).' Well, most of them '(see' issue '#954' for the pending 'ones).' commit c7fb9e1bf74f9ac3bce8b3706e0026e38f1066c2 Merge: 3b6583707 dcc2f0e79 Author: Alan Garny '' Date: Wed Apr 27 18:03:15 2016 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3b65837074c547dca1de0496f7b1a1767412f6ef Author: Alan Garny '' Date: Wed Apr 27 18:02:48 2016 +0200 Qt: some work on upgrading to version 5.6 '(#908)' '[ci' 'skip].' commit dcc2f0e79318524ad503a01f8bad04761a104eac Author: Alan Garny '' Date: Tue Apr 26 11:35:22 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit df66a34263a951a97a8010b3f7b89aa714f8f693 Author: David Brooks '' Date: Tue Apr 26 08:25:20 2016 +1200 Reference the libgit2 and zlib plugins otherwise, on OS X, the PMR window 'won'\''t' be able to find them. commit a6c27e2efc0360e336251ec9802f299c8d01cd51 Author: David Brooks '' Date: Tue Apr 26 08:17:25 2016 +1200 Simplify and clean up our CMake scripts '(#951)' commit b47aa841fb7684e68c4dc7ca18e6d157bcd2c351 Author: David Brooks '' Date: Tue Apr 26 08:11:24 2016 +1200 List PMRSupport as a dependency for PMRWindow so the plugins window works as expected. commit c952103aebad203e819842e40c377d3f7fe630e4 Merge: 503a2693c d0d4c4f7b Author: David Brooks '' Date: Tue Apr 26 08:09:37 2016 +1200 Merge branch ''\''master'\''' into pmrsupport commit d0d4c4f7b6782c7bdb4c1ef5f997681ed138a845 Merge: 80eecaf72 561b95718 Author: Alan Garny '' Date: Mon Apr 25 19:30:47 2016 +0200 Merge pull request '#952' from opencor/issue951 Simplify and clean up our CMake scripts '(closes' '#951).' commit 561b9571850123b1499e696ff37dbd300b1d91bd Author: Alan Garny '' Date: Mon Apr 25 18:44:33 2016 +0200 Simplify and clean up our CMake scripts '(#951).' commit ae53405b8ae8c0530a91e75c3a14ca8e76003a30 Author: Alan Garny '' Date: Mon Apr 25 17:27:43 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit b2cb038b66a283ea79c22dcc44d7d8ebc6e3c089 Author: Alan Garny '' Date: Mon Apr 25 17:14:22 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit 7a9b7e7621d9176bc75304298ee5f602482cfab7 Author: Alan Garny '' Date: Mon Apr 25 17:11:44 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit 130eb2180219501f136fb8cf3f712a6df42877e7 Author: Alan Garny '' Date: Mon Apr 25 16:39:53 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit c1cd19b4cc2e58bc06c96251ca81e3419fc453ea Author: Alan Garny '' Date: Mon Apr 25 16:07:09 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit 7321d67181cca4b1b4c4db7d8a3e8adef25745ba Author: Alan Garny '' Date: Mon Apr 25 15:23:19 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit 99da1486d8ca685c98c698fe586a75d055e42332 Author: Alan Garny '' Date: Mon Apr 25 13:43:21 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit c67057267f61d2d1df03e8c51059ba7439553652 Author: Alan Garny '' Date: Mon Apr 25 13:43:11 2016 +0200 Simplify and clean up our CMake scripts '(#951)' '[ci' 'skip].' commit 503a2693cc5c043ea19470ff2ed6d12e7ac3c012 Author: David Brooks '' Date: Mon Apr 25 21:30:53 2016 +1200 '#931:' Add Windows export definitions. commit 37c4ff62488f3525ba7f9356efa562ff33e7bbcc Author: David Brooks '' Date: Mon Apr 25 21:07:26 2016 +1200 '#931:' Separate out PMR web service interface into its own plugin. commit 80eecaf725d39e24c9b5e9553e9178bc95d626ec Author: Alan Garny '' Date: Sat Apr 23 17:17:06 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3cac3ae968c29daeb8283dd10d233292cdcdc280 Author: Alan Garny '' Date: Sat Apr 23 17:03:26 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit ed515e2e917b96cffca21169cea0835092d71699 Author: Alan Garny '' Date: Sat Apr 23 16:53:21 2016 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit a623cc9037ac46af02d4a31927e02657e2eb26bb Author: Alan Garny '' Date: Fri Apr 22 14:03:57 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 60c5587af825d5f4914b1936060b4d7847113d23 Author: Alan Garny '' Date: Thu Apr 21 16:36:57 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit b3f61275ce316155b28a91c5c3e7da2785c97028 Author: Alan Garny '' Date: Thu Apr 21 16:33:27 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 2f3f9b074859c943efd778eff0ffb274a92af849 Author: Alan Garny '' Date: Wed Apr 20 15:38:54 2016 +0200 CLI version: some minor refactoring '[ci' 'skip].' commit c4cbf88ff3f7f7daf6b748054d9629a18c9e8b7d Author: Alan Garny '' Date: Wed Apr 20 15:23:22 2016 +0200 CLI version: some minor refactoring. commit 75a2294d73723b014095356d5a73a1954b70df91 Author: Alan Garny '' Date: Tue Apr 19 18:59:04 2016 +0200 Header files: cleaned up the third-party header files that enable/disable some warnings. Indeed, I am not sure how it came about, but they were only disabling warnings, never re-enabling $'them\342\200\246' commit 4de649c989b34db0630f4c1c0f211e76c1583e6d Merge: fe9625dac 2013338ae Author: Alan Garny '' Date: Tue Apr 19 17:39:00 2016 +0200 Merge pull request '#945' from opencor/issue944 Use '#pragma' once rather than include guards '(closes' '#944).' commit 2013338ae1b28bc67197fa07899dd5799bfabde9 Author: Alan Garny '' Date: Tue Apr 19 16:59:49 2016 +0200 Use '#pragma' once rather than include guards '(#944).' commit 1760292b4f1d34327c3421646003c22dc45959a8 Author: Alan Garny '' Date: Tue Apr 19 16:24:20 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 0d120bd0e80d2552256c589c04c97186dbbf7b65 Author: Alan Garny '' Date: Tue Apr 19 16:08:20 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 161842dcf898bc32cc3bdf61bfdc7386ec9418fb Author: Alan Garny '' Date: Tue Apr 19 16:07:28 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit da777eb40bf564e076f59bce96f4c5b36baa3b4f Author: Alan Garny '' Date: Tue Apr 19 16:07:00 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 361feb56602dcdbeef0088768c2190f1cb3b01dd Author: Alan Garny '' Date: Tue Apr 19 16:02:07 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 0b093bbf53bbb86f066ddd88cff3d7e989989c8d Author: Alan Garny '' Date: Tue Apr 19 16:00:49 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit df9ebfa60eca0e0999d675e001203989f4fa7021 Author: Alan Garny '' Date: Tue Apr 19 15:59:44 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 81f5008e30cad49967ad5effa2c990cb3ba53d72 Author: Alan Garny '' Date: Tue Apr 19 15:58:52 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 4d2d899f7e6b1e0f34dcf4ecebc0cc952bd7bf0a Author: Alan Garny '' Date: Tue Apr 19 15:57:58 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 2869f04445f66e83ac1dd6c7594671df2c17d025 Author: Alan Garny '' Date: Tue Apr 19 15:51:28 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 0178b4bb76a69b188cd8a590476bbbb19b758c85 Author: Alan Garny '' Date: Tue Apr 19 15:47:48 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 1e316bd32190eef7c27ab9f60d1a8dc2a4c956ac Author: Alan Garny '' Date: Tue Apr 19 15:40:15 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 7093d0ab9081fafe2f78f26be9c82684241887b9 Author: Alan Garny '' Date: Tue Apr 19 15:36:22 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit 4d420fa1910f3de5561f9be899d5fe58b3065352 Author: Alan Garny '' Date: Tue Apr 19 15:34:21 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit a21f2b51eb8eef4a2ee72dcd163d5355711ace1b Author: Alan Garny '' Date: Tue Apr 19 15:33:10 2016 +0200 Use '#pragma' once rather than include guards '(#944)' '[ci' 'skip].' commit fe9625dac4df07323052f05eba958ff35c1e138c Merge: ddfd6899a 82f14c75d Author: Alan Garny '' Date: Mon Apr 18 16:52:50 2016 +0200 Merge pull request '#943' from opencor/issue941 Single Cell view: fixed a problem with infinite loop in modification prompting '(closes' '#941).' commit 82f14c75d598ed834c61ac1552bb43ee86f6774c Author: Alan Garny '' Date: Mon Apr 18 15:52:36 2016 +0200 Single Cell view: fixed a problem with an infinite loop in modification prompting '(#941).' commit ddfd6899a66c1f210993c1f88fbea209ac4456f4 Author: Alan Garny '' Date: Mon Apr 18 15:32:20 2016 +0200 Central widget: slight improvement to the way we prompt for file modifications '[ci' 'skip].' commit cfce502e1aa85a3cc7c98a542d229a19394de89f Author: Alan Garny '' Date: Mon Apr 18 15:22:42 2016 +0200 File: slight improvement to our file checking algorithm '[ci' 'skip].' commit 2b970ac6b90ed4debb910b7fcd2bba5b508a5eb7 Author: Alan Garny '' Date: Mon Apr 18 14:54:50 2016 +0200 Single Cell view: fixed a problem with opening CellML models from SED-ML documents '(closes' '#942).' commit 6ab85486992ea6c8b203c2fb0bec5ef0251613a0 Merge: 3eef5abe7 e2b65d72c Author: Alan Garny '' Date: Mon Apr 18 14:48:45 2016 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3eef5abe7493f1dbebcc996221e65dfeeb62969e Author: Alan Garny '' Date: Mon Apr 18 14:48:28 2016 +0200 Some minor refactoring '[ci' 'skip].' commit e2b65d72c51aa4d12750c0e06df6372008388f6f Author: Alan Garny '' Date: Sat Apr 16 05:08:14 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 69a1b51c112f4d4caa9274981e1a385d50303293 Author: Alan Garny '' Date: Sat Apr 16 04:21:19 2016 +0200 Some minor cleaning up now that we have got the Qt 5.6 tests to work on all our supported platforms '[ci' 'skip].' commit d1b11ff295abc4c79504a100fb4f0dbf1801bd8c Author: Alan Garny '' Date: Sat Apr 16 04:16:52 2016 +0200 Tests: re-use 'QTEST_GUILESS_MAIN()' '(rather' than 'QTEST_APPLESS_MAIN()).' The move to 'QTEST_APPLESS_MAIN()' for our tests seemed sensible, but... this 'didn'\''t' account for the fact that we have some XML-based tests '(COMBINESupport::tests' and 'Core::mathmltests)' and that this requires an application. So, rather than 'QTEST_APPLESS_MAIN(),' we should use 'QTEST_GUILESS_MAIN()' for at least those two tests, but in the end we might as well use 'QTEST_GUILESS_MAIN()' for all of them '(just' in case for the 'future).' Note '#1:' we 'don'\''t' want to use 'QTEST_MAIN()' since we want to be able to run our tests on Travis CI, which means that we cannot have a GUI. Note '#2:' interestingly enough, the issue with our XML-based tests only occurs on Windows. In other words, to use 'QTEST_APPLESS_MAIN()' on Linux and OS X is fine in the sense that the tests pass while they crash on Windows. commit 97c4d7cabe04de55fa8e3fdb01952fe54c5807eb Author: Alan Garny '' Date: Fri Apr 15 13:28:33 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 90213b914a9d32a46392b5756fc58bc81583c424 Author: Alan Garny '' Date: Thu Apr 14 19:10:54 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 5c8fcfdeded8f40625fdf711f5ad90d2d2efcd6a Author: Alan Garny '' Date: Thu Apr 14 17:56:22 2016 +0200 Viewer: rename it to MathMLViewer '(#940).' commit e69fc443b194bc2a08a691ab1cbd1fc77578e1d3 Author: Alan Garny '' Date: Thu Apr 14 16:45:38 2016 +0200 Some minor cleaning up. commit 5942e706a8e11601074254fba23a47a8ccc1f309 Merge: d464ffd57 8755da061 Author: Alan Garny '' Date: Thu Apr 14 15:41:42 2016 +0200 Merge pull request '#939' from opencor/issue938 Tests: use 'QTEST_APPLESS_MAIN()' rather than 'QTEST_GUILESS_MAIN()' '(closes' '#938).' commit 8755da061f93d2a398de35c4b3704d0a014b9dbd Author: Alan Garny '' Date: Thu Apr 14 15:11:01 2016 +0200 Tests: use 'QTEST_APPLESS_MAIN()' rather than 'QTEST_GUILESS_MAIN()' '(#938).' commit d464ffd578cd48c5c44db24a5d23eb1d9fec43e9 Author: Alan Garny '' Date: Thu Apr 14 14:46:23 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0139345a0617fdc1b7d76ac4f0bffd667ef5d87a Author: Alan Garny '' Date: Wed Apr 13 18:28:13 2016 +0200 Travis CI: re-enabled OS X and Debug. commit 800e7edb043da83b32654f27acdf6eef720ba801 Author: Alan Garny '' Date: Wed Apr 13 18:20:38 2016 +0200 Travis CI: indeed, on Linux '(Trusty),' we have access to G++ 4.8.5. commit d9480267aece7fb345217e8899d621f9311c7d43 Author: Alan Garny '' Date: Wed Apr 13 18:15:41 2016 +0200 Travis CI: 'don'\''t,' on Linux, retrieve the latest version of CMake anymore since the one available on Trusty is good enough. Also temporarily disable OS X and debug since we want to also check whether g++ is needed. commit df0c4242c695e44f34735abea68246d65ad0de3b Author: Alan Garny '' Date: Wed Apr 13 18:12:08 2016 +0200 Travis CI: reverting '[ci' 'skip].' commit a5cc0fb47a015e9117d334e771d1e04698f216cb Author: Alan Garny '' Date: Wed Apr 13 18:05:46 2016 +0200 Travis CI: checking the version of CMake that is currently being used. commit 5df7750fedc26aaddf88bae651dc76b4eaaaf797 Author: Alan Garny '' Date: Wed Apr 13 17:40:37 2016 +0200 Some minor cleaning up. commit 4d52ba2509e856d272d6a50f20cbfba8c7c2e2b4 Merge: b80f9ae2a 5407e4a8d Author: Alan Garny '' Date: Wed Apr 13 16:59:53 2016 +0200 Merge pull request '#937' from opencor/issue936 libgit2: upgraded to version 0.24.1 '(closes' '#936).' commit 5407e4a8de276b6e61c3dfbac399fffa4b3525be Author: Alan Garny '' Date: Wed Apr 13 16:27:22 2016 +0200 libgit2: upgraded to version 0.24.1 '(#936).' commit 57720a9599a2a48ba494fea967db35834a4ae189 Author: Alan Garny '' Date: Wed Apr 13 16:17:05 2016 +0200 libgit2: some work towards upgrading to version 0.24.1 '(#936).' commit dc1b08a6266d04fcd84f5ec5c45451954d8faf44 Author: Alan Garny '' Date: Wed Apr 13 15:15:47 2016 +0200 libgit2: some work towards upgrading to version 0.24.1 '(#936).' commit b80f9ae2a3ccad97b465d28febb9e7be381a56af Author: Alan Garny '' Date: Wed Apr 13 14:56:31 2016 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 69b7996569286ec4c20844ffd7f871f1af51a480 Author: Alan Garny '' Date: Mon Apr 11 17:29:21 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 41deb9d46f0dee471db75a99d5f2cc4c687d80f6 Author: Alan Garny '' Date: Mon Apr 11 15:34:04 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit a411b7defe7aaabf17bac453728b9e138e0fc69a Author: Alan Garny '' Date: Mon Apr 11 14:34:26 2016 +0200 Renamed the plugin PhysiomeModelRepositoryWindow to PMRWindow '(closes' '#935).' commit e0d4a466add5ab612a45b98b953c677190328ca7 Author: Alan Garny '' Date: Mon Apr 11 11:30:56 2016 +0200 jQuery: upgraded to version 2.2.3 '(closes' '#934).' commit 9873f95193d85e6f5f3a1dcc9dc35c95473fb365 Author: Alan Garny '' Date: Sat Apr 9 14:41:04 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 49a7c43a4316e1e321081c75d3c13a4eec91366d Author: Alan Garny '' Date: Fri Apr 8 10:01:00 2016 +0200 PMR window: some CSS minor cleaning up '[ci' 'skip].' commit 71f933bbbeab70ad2cb649bd66d85337a51f7116 Author: Alan Garny '' Date: Fri Apr 8 09:54:56 2016 +0200 Busy widget: remove the semi-transparency option '[ci' 'skip].' It just $'doesn\342\200\231t' look $'\342\200\230right\342\200\231' from a GUI viewpoint. At the end of the day, we still have what we wanted in the first place, i.e. have the parent really unusable. Indeed, even though, in the PMR window, we do disable the web viewer, that viewer can still be used. However, now with the busy widget covering all of its parent '(and' using a transparent background for the non-busy part of its 'rendering),' we are fine '(i.e.' the parent can really be considered '‘disabled’).' commit 117980365d10c215e116614076ac365684cc1df4 Author: Alan Garny '' Date: Thu Apr 7 17:57:40 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 87975b0ae09f3d0622e377f098fc3d389b9f424b Author: Alan Garny '' Date: Thu Apr 7 16:05:07 2016 +0200 PMR window: make sure that we get an information the first time we try to show exposure files for an exposure that 'doesn'\''t' have any '[ci' 'skip].' commit b36eb72d9799b4a8f9fbebcaf3aa0fdb089c31b9 Author: Alan Garny '' Date: Thu Apr 7 16:04:35 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit ee76c078439bd5b0a4feab3c423a69f616836416 Author: Alan Garny '' Date: Thu Apr 7 10:49:01 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0f55b1161d0ec2a6f95dcacb8f9988784c3f7035 Author: Alan Garny '' Date: Wed Apr 6 17:19:00 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 098ae5a2f29c8286b159706866eec0377cfded9f Author: Alan Garny '' Date: Tue Apr 5 18:59:16 2016 +0200 PMR window: fixed a small problem with exposure files not being added '[ci' 'skip].' Indeed, say that you had to retrieve the URL of a workspace and of an exposure file URL, and that the latter is retrieved first. Then, because our counter was still at 1, we $'didn\342\200\231t' add the exposure $'files\342\200\246' commit 9be9a2051084ad4c04917246f022f2e26a9fa356 Author: Alan Garny '' Date: Tue Apr 5 18:54:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 7f7c10b1ded8a4d2186d3a07984c59dfa52ce209 Author: Alan Garny '' Date: Tue Apr 5 18:45:42 2016 +0200 PMR window: improved showing/hiding of our busy widget '[ci' 'skip].' commit 0cefd88e1c10867e6c445c4c94f914e121822b18 Author: Alan Garny '' Date: Tue Apr 5 18:33:16 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 23ddd54bffd6ccbd93c21ac361e2215b067673de Author: Alan Garny '' Date: Tue Apr 5 15:54:59 2016 +0200 Busy widget: can now have a semi-transparent background. This is useful for our PMR window since a web-based widget is still usable even when disabled '(!!).' commit 5b7485909de159bdf6d902e589869ce3fa85b9ef Author: Alan Garny '' Date: Tue Apr 5 14:51:52 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit eb653bdf50a91442a11baa58d7de8766e09df5ba Author: Alan Garny '' Date: Tue Apr 5 14:45:30 2016 +0200 Busy widget: now takes the size of its parent. The idea is to ensure that if it has a parent that cannot be disabled '(e.g.' QWebEngine 'apparently),' then we cannot still interact with its parent by $'mistake\342\200\246' commit 4459379d378f4a835106d0df7bb4b681683d9fd5 Author: Alan Garny '' Date: Tue Apr 5 13:24:55 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit e3dbcff45e24188eb85968ab9cca5bb7bb80e1d0 Author: Alan Garny '' Date: Tue Apr 5 11:45:29 2016 +0200 Some minor refactoring of our busy widget related classes '[ci' 'skip].' commit 058058cff769d63f161fc4651ff6de4d794ceb12 Author: Alan Garny '' Date: Tue Apr 5 11:25:04 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit c5147b64b98e806c66375c4ada0335fbae7d20bd Author: Alan Garny '' Date: Tue Apr 5 11:02:52 2016 +0200 PMR window: allow the cloning of a workspace even if it 'doesn'\''t' contain an exposure file '[ci' 'skip].' This is the case with the $'\342\200\234Andre' playing with nested tasks in $'SED-ML\342\200\235' exposure '(see' 'https://models.physiomeproject.org/e/c2).' commit 1a0b5b510bf4c18a8ae488c3d0b240917cdf7294 Author: Alan Garny '' Date: Tue Apr 5 10:53:06 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit a9b3d3f2f01ce986824f06cc873f04f29ba7d5e4 Merge: 9df953510 40a002ed3 Author: Alan Garny '' Date: Mon Apr 4 13:48:33 2016 +0200 Merge pull request '#932' from opencor/issue930 PMR window: now properly handle JSON responses from PMR '(#932).' commit 40a002ed370c867ec615afb6ffaf2a94bcc0afae Author: Alan Garny '' Date: Mon Apr 4 13:11:16 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930).' commit 30275b6713882796dbbda016c39b5c13aaa569e7 Author: Alan Garny '' Date: Mon Apr 4 12:54:44 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930).' commit 41a12beb08abe6172e8415d011d08e7d3cc80f99 Author: Alan Garny '' Date: Mon Apr 4 11:45:46 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit d456b1b9a88ae67a1f74055a76c069e3dc4a2e2b Merge: 5dab02a3d 9df953510 Author: Alan Garny '' Date: Mon Apr 4 11:12:41 2016 +0200 Merge branch ''\''master'\''' into issue930 '[ci' 'skip].' commit 9df953510a885bf05045cb3ab1210f8004c54f4d Author: Alan Garny '' Date: Mon Apr 4 11:12:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' The idea is, as much as possible, not to use the $'\342\200\230default\342\200\231' section in a $'\342\200\230switch\342\200\231' statement. Indeed, $'it\342\200\231s' only too easy to overlook a particular $'\342\200\230case\342\200\231,' especially when new options become available to the type that is $'\342\200\230switched\342\200\231.' commit 5dab02a3d577a5e6d5ba0ba8078027ad1c2157b8 Author: Alan Garny '' Date: Mon Apr 4 10:57:48 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 256293d9d65062d7e0220b192da79929848f818b Author: Alan Garny '' Date: Sun Apr 3 20:07:26 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit 8d91dc6cd66808999e2661a31ece95156822d925 Author: Alan Garny '' Date: Sun Apr 3 20:01:34 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit 69decab40bbdd977d252e4031da14f37ea6806cd Author: Alan Garny '' Date: Sun Apr 3 19:20:04 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit 88830833ba49769fe92342927ebbf13c87fa90a1 Author: Alan Garny '' Date: Sun Apr 3 18:03:18 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit ab8fcfac73aea648f34ccd6e0ac5c48548f33947 Author: Alan Garny '' Date: Sun Apr 3 17:42:46 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit c9df1b0d2be476121a1671bc65e1dc327c8b52f1 Author: Alan Garny '' Date: Sun Apr 3 16:45:51 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit be79d141d8185a2b1dc425b12c978f88507bb91a Author: Alan Garny '' Date: Sun Apr 3 03:04:43 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 63f9360e09cdb53e184a815a9b212997e59fcc82 Author: Alan Garny '' Date: Sun Apr 3 02:19:56 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit f90e95c8b53df464d73495da754a1cc4e0e1b705 Author: Alan Garny '' Date: Sun Apr 3 02:19:32 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 3a0aa1e7c8f6888fa992b979027db27ca47e0331 Author: Alan Garny '' Date: Sun Apr 3 01:06:47 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 64c06ce958e8fe2c7c128c50c20698acb897096a Author: Alan Garny '' Date: Sun Apr 3 00:52:46 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 49eaa959baa68db73070c074ef823fdc63990da9 Author: Alan Garny '' Date: Sun Apr 3 00:34:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 4dad00ffc7f62c96750dee361ce4ade415c87c98 Author: Alan Garny '' Date: Sun Apr 3 00:29:48 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 9c3a7623eae61fcd91a36e4d05444f3c8cdcea5f Author: Alan Garny '' Date: Sat Apr 2 21:10:47 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit cfbe0ba493ec1e26b3703957685069ca61115ce9 Author: Alan Garny '' Date: Sat Apr 2 21:06:36 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit 1f53f5032d94e23692792c18ab986c8cdf177a6e Author: Alan Garny '' Date: Sat Apr 2 21:06:13 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 156a19963f52b7b155aa0d9ad148abf6c13f7319 Author: Alan Garny '' Date: Sat Apr 2 20:20:47 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit 633038b4a14820cc26ac08ea2a2483ed46032012 Author: Alan Garny '' Date: Sat Apr 2 20:08:45 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 80fb8e54801bfc27ec819883de6739016757a80b Author: Alan Garny '' Date: Fri Apr 1 18:53:53 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0c3edb8cfd8709bc7b2dd013b8158ad37f426ba9 Author: Alan Garny '' Date: Fri Apr 1 18:49:00 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 7ff994769f9a1eca75bbdb7fd2cdf2c6ac71c5a6 Author: Alan Garny '' Date: Fri Apr 1 17:58:18 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit a832e2f3d43652aa1ec5bc3758a8720533126b60 Author: Alan Garny '' Date: Fri Apr 1 17:39:28 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit b8cca80ded569d0af2a81c0646690482c085b3d7 Author: Alan Garny '' Date: Fri Apr 1 17:21:47 2016 +0200 PMR window: some work towards properly handling JSON responses from PMR '(#930)' '[ci' 'skip].' commit dd5bc20da523a148e508fa25bed72c15e3458b91 Author: Alan Garny '' Date: Fri Apr 1 16:21:05 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 0324f36ac4224fc92ffd1461feb4a72292d6b459 Author: Alan Garny '' Date: Thu Mar 31 10:54:44 2016 +0200 New snapshots. commit 630403ccf004be21c365f04761dbeb8b22755a3d Author: Alan Garny '' Date: Thu Mar 31 10:52:52 2016 +0200 Single Cell view: clear all of our simulation data upon reloading '[ci' 'skip].' commit 573152f8b6055f627dd9323264d1a6c8afe7cfb7 Author: Alan Garny '' Date: Thu Mar 31 09:18:50 2016 +0200 Travis CI: the OS X queue seems to have been cleared, so re-enabling OS X builds. commit 5c2d6086f7fc1522b344434430d61a213ff4fd50 Author: Alan Garny '' Date: Wed Mar 30 17:16:34 2016 +0200 New snapshots. commit 39682e8376b5c32494f8587cb14292571ab45eb7 Author: Alan Garny '' Date: Wed Mar 30 17:15:24 2016 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 84374cc0f0300886b6884e466fba995bbbd9d517 Merge: 81c4b98ce ff27aafb0 Author: Alan Garny '' Date: Wed Mar 30 16:51:22 2016 +0200 Merge pull request '#929' from opencor/issue887 File handling: now detect when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(closes' '#887).' commit 81c4b98ce32fa8c60c885f6dcb908daf666603e9 Author: Alan Garny '' Date: Wed Mar 30 16:47:24 2016 +0200 Slight updates to the user documentation '[ci' 'skip].' commit ff27aafb0ee4ab13fa3691ab78f3aaebe4748e77 Author: Alan Garny '' Date: Wed Mar 30 16:34:03 2016 +0200 Travis CI: temporarily disabling OS X builds. For some reasons, everything works fine here, but the OS X debug PR build fails. Also, the build log is very slow at the moment, so temporarily disabling OS X builds. commit 5eb2058a4a5fd389db4f0b30c60f5b94c27d8b81 Merge: 1b05e4244 8b7fe881e Author: Alan Garny '' Date: Wed Mar 30 16:32:33 2016 +0200 Merge branch ''\''master'\''' into issue887 '[ci' 'skip].' commit 8b7fe881e05defb0e9e670fa5956084053c4d36d Author: Alan Garny '' Date: Wed Mar 30 16:23:01 2016 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 1b05e4244c3800f6c13ae8e56a5ebc5051364b8a Merge: bdd9c983a f4c37710b Author: Alan Garny '' Date: Wed Mar 30 15:17:03 2016 +0200 Merge branch ''\''master'\''' into issue887. commit f4c37710bf18a26ef5f29fdd311f6a1eff29bc52 Author: Alan Garny '' Date: Wed Mar 30 15:13:31 2016 +0200 Single Cell view: clear all of our simulation data upon reloading '[ci' 'skip].' commit 5448fe119390dfa5ec1e58f7e26f6f84e4fa447a Author: Alan Garny '' Date: Wed Mar 30 15:02:54 2016 +0200 General: now use a preferred view to open a particular type of file '(#925)' '[ci' 'skip].' commit 4cda0de1660d8043b910095f64429f433040a5a5 Author: Alan Garny '' Date: Wed Mar 30 15:00:15 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit bdd9c983a25474fff23599aaf7c99666bff6b25a Author: Alan Garny '' Date: Wed Mar 30 14:42:32 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887).' commit d31dce9bc1bc399c76542ad6a5b437fb285b3886 Author: Alan Garny '' Date: Wed Mar 30 14:24:14 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887).' commit 8d72241b1d8c0c56d62957fd853760f06aa0f51b Author: Alan Garny '' Date: Wed Mar 30 14:21:08 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 5adb7c64039a1b2359c7ac49360a5f57d6c06053 Author: Alan Garny '' Date: Wed Mar 30 14:12:47 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit fe71ebf9b698b44f50874362e4c43b56a1d19749 Author: Alan Garny '' Date: Wed Mar 30 11:26:34 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit d75d50f99c3073a1dfd7d4245cfd422d9fc5e4c5 Author: Alan Garny '' Date: Wed Mar 30 11:24:13 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit 6b09ea572f7b52e0eb1660989e8a90a30c107b10 Author: Alan Garny '' Date: Wed Mar 30 11:18:55 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit d39a318435781c6ae8ad506593c89dbedcdda628 Merge: 8fb0e09a8 3166c07f4 Author: Alan Garny '' Date: Wed Mar 30 11:08:20 2016 +0200 Merge branch ''\''master'\''' into issue887 '[ci' 'skip].' commit 8fb0e09a89fe9fd3604e47f3f137b3a676e8daf8 Author: Alan Garny '' Date: Wed Mar 30 10:41:55 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit 6b41654359cd25df2674ae5d6e03f37864c43eab Author: Alan Garny '' Date: Wed Mar 30 10:18:38 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit 9a947bb72ad7ce9a3f732a25e1f36b14ec76af43 Author: Alan Garny '' Date: Wed Mar 30 10:03:17 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit c1ba75adffcb2fa41c401b1e2d483529cdd88bef Author: Alan Garny '' Date: Wed Mar 30 09:46:22 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' commit 65be7cda85fc40e48182bf00b11149eddca7a2b6 Author: Alan Garny '' Date: Wed Mar 30 09:10:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 393712879042ceecba518bc405120f967e9615e4 Author: Alan Garny '' Date: Tue Mar 29 19:25:49 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' Now reload a view if a file has actually changed '(i.e.' not when only one or several of its dependencies has 'changed).' commit 48890d62b8e8c630a06bee340285daf8ec1b387a Author: Alan Garny '' Date: Tue Mar 29 18:26:45 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 38583a515e635def5f7de10d8cd3f2c85af957b9 Author: Alan Garny '' Date: Tue Mar 29 18:23:41 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 1451c49ab01ec81602b8947e8cca339521a81498 Author: Alan Garny '' Date: Tue Mar 29 18:16:57 2016 +0200 File Organiser window: automatically remove from the organiser any file that has been physically deleted '[ci' 'skip].' commit 3166c07f4b64894c86d744b91fc4da94bcbb733f Author: Alan Garny '' Date: Tue Mar 29 16:07:28 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit deaffbc0abab03daeba6861b61656a55896b94dc Author: Alan Garny '' Date: Tue Mar 29 15:47:03 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit a0c750c6afa21b5fd2804433a02da426cc4452a3 Merge: f497e5fdf 8ab6c7312 Author: Alan Garny '' Date: Tue Mar 29 13:24:46 2016 +0200 Merge branch ''\''master'\''' into issue887. commit 8ab6c73127b155a81c2eefe02fdfc07f10b4d625 Author: Alan Garny '' Date: Tue Mar 29 13:21:05 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. This is now working '(incl.' the 'tests),' so we can re-enable the Linux builds. commit fd9bef02408cd503368367ec8e32ddbc05907f32 Author: Alan Garny '' Date: Tue Mar 29 13:08:24 2016 +0200 Some minor cleaning up '[ci' 'skip].' commit 6b4d7684eca070e8677ce4578ec71da13d3ca5ae Author: Alan Garny '' Date: Tue Mar 29 13:01:48 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit 49c9b1c09294ddcfe6ba0b6c5f148b008fc5fcd5 Author: Alan Garny '' Date: Tue Mar 29 11:37:49 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit 760f7cd633b8765949972b5ddbdabfecee9358b7 Author: Alan Garny '' Date: Tue Mar 29 10:41:56 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit 2505b0ed6f3d5c5c924bb3cf9d9b1ea617f3b2aa Author: Alan Garny '' Date: Tue Mar 29 10:32:40 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit f96ea5b09afa85e1f5ff5752abcbd674d8c62914 Author: Alan Garny '' Date: Tue Mar 29 10:28:48 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit e51440c2d307ba37a7f58de0728dc37c43e022e9 Author: Alan Garny '' Date: Tue Mar 29 10:24:25 2016 +0200 Travis CI: upgraded to CMake 3.5.1 on Linux '[ci' 'skip].' commit e4e78534c526fd69f3b891112bec6c849295a2ad Author: Alan Garny '' Date: Tue Mar 29 10:19:42 2016 +0200 Travis CI: trying to use an ''\''old'\''' version of Qt '(Qt' '5.5)' on OS X. commit f497e5fdfa94fc1fc3854b5be84a9face11f597b Merge: 8b313923e b070fe329 Author: Alan Garny '' Date: Mon Mar 28 11:42:49 2016 +0200 Merge branch ''\''master'\''' into issue887 '[ci' 'skip].' commit b070fe329c008d6ea539939a30c6875ecbdf6ab8 Merge: 955beccc3 807ca2e3f Author: Alan Garny '' Date: Mon Mar 28 11:35:29 2016 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 955beccc3c552d91b008b5392c9b00b9343de9f5 Author: Alan Garny '' Date: Mon Mar 28 11:33:38 2016 +0200 Single Cell view + SED-ML: now handle the case where a SED-ML file is generated on a different drive from the CellML file it refers '(closes' '#928).' commit 807ca2e3f95718ec3c157818749d449a2312d04d Author: Alan Garny '' Date: Mon Mar 28 11:33:38 2016 +0200 Single Cell view + SED-ML: now handle the case where a SED-ML file is generated on a different drive from the CellML file it refers '(closes' '#928).' commit 8b313923e3bf2d1ecbcb806a3dedabd00eff4550 Author: Alan Garny '' Date: Sun Mar 27 20:44:10 2016 +0200 File handling: some work on detecting when one of a 'file'\''s' dependencies has been modified and offer to reload the file '(#887)' '[ci' 'skip].' This now works fine with CellML files. Now need to do the same with SED-ML files. commit 0ed6cffd9b4941ff33cdbd6870c589fe40b74d11 Author: Alan Garny '' Date: Sat Mar 26 14:55:02 2016 +0100 Make sure that our status bar is shown/hidden, depending on its 'action'\''s' status. Indeed, for some unclear reasons, to open/handle a file / OpenCOR URL, with OpenCOR not running in the first place, results in the status bar not being shown '(assuming' it has to be 'shown).' So, we make sure that the status bar is shown/hidden, as needed... commit 6897c59fa256ac1bbf8284523d2c2e5d79e14863 Author: Alan Garny '' Date: Sat Mar 26 14:49:35 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 605dfebd9752ce23394b6a99a26b0c8d3648501f Author: Alan Garny '' Date: Fri Mar 25 23:33:12 2016 +0100 General: can now specify whether we want MIME types for opening or saving a file '(this' is indeed important for the Single Cell view where we want to be able to open CellML/SED-ML files and COMBINE archives, but only save CellML 'files).' Updated the developer documentation. Also some minor cleaning up '[ci' 'skip].' commit 5a3db444541da50856f8a52ff83e0480518cef81 Author: Alan Garny '' Date: Fri Mar 25 22:00:43 2016 +0100 General: sort our filters '[ci' 'skip].' commit 05ce6a6b247d37c2ea48eaec7d2e51e31688352b Author: Alan Garny '' Date: Fri Mar 25 21:55:03 2016 +0100 Fixed a small issue that got introduced in commit 55da5ee '[ci' 'skip].' commit 2b9a4b762ef38c754deeae08c8d295bf1eb0093e Author: Alan Garny '' Date: Fri Mar 25 20:17:36 2016 +0100 General: now, by default, we open a file using the $'\342\200\230All' $'Files\342\200\231' filter, while we use the first supported filter when saving a file '(#927)' '[ci' 'skip].' commit a008f084b5e769715ebc96894da3bed63d725dc7 Author: Alan Garny '' Date: Fri Mar 25 20:14:51 2016 +0100 General: now, by default, we open a file using the $'\342\200\230All' $'Files\342\200\231' filter, while we use the first supported filter when saving a file '(#927).' commit e3d0da75c099ba30e9c19cceec52dcd4aa826dfe Author: Alan Garny '' Date: Fri Mar 25 20:06:03 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d1c693ce4f9c656c95c94ca6d51a07050533bfe5 Author: Alan Garny '' Date: Fri Mar 25 19:21:20 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 7f8e0fc760c3ee8b3cfd1cebc831841e92fd45b4 Merge: fc213203f a90d8f25b Author: Alan Garny '' Date: Fri Mar 25 18:35:12 2016 +0100 Merge pull request '#926' from opencor/issue925 General: now use a preferred view to open a particular type of file '(closes' '#925).' commit a90d8f25b5ab4da6932623910bde791c360f2bdf Author: Alan Garny '' Date: Fri Mar 25 18:06:01 2016 +0100 General: now use a preferred view to open a particular type of file '(#925).' commit 736617095fdb2c8c2efb12037fce4789b5eb5a85 Merge: d0e43a3c1 fc213203f Author: Alan Garny '' Date: Fri Mar 25 17:24:40 2016 +0100 Merge branch ''\''master'\''' into issue925 '[ci' 'skip].' commit fc213203f31ad30367749bb8921985979e6f000f Author: Alan Garny '' Date: Fri Mar 25 17:20:11 2016 +0100 Some minor cleaning up '[ci' 'skip].' To get things to build on $'Windows\342\200\246' commit d0e43a3c163d7d40448b5fb1d25486962a0e5091 Author: Alan Garny '' Date: Fri Mar 25 17:06:19 2016 +0100 General: some work on using a preferred view to open a particular type of file '(#925)' '[ci' 'skip].' commit ad0d906a897b8e50f0d6fa8161dd3c5d1061c8b0 Author: Alan Garny '' Date: Fri Mar 25 16:06:38 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit de91fff975e3ad92b7101ac24109930d0600c57b Author: Alan Garny '' Date: Fri Mar 25 14:34:29 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 80f59eee32daf1d26c09bcb8336cbf91ac21849b Author: Alan Garny '' Date: Fri Mar 25 14:11:19 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ab4613cab1fa61cc89b2263fdb2ba7e2d42c2ce7 Author: Alan Garny '' Date: Fri Mar 25 14:08:08 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b9577ebeb79fabc3647041ab5273db1fa38b889f Author: Alan Garny '' Date: Fri Mar 25 14:05:54 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit af0733c6667d51c9ffe5da1d04c39f68a226732e Author: Alan Garny '' Date: Fri Mar 25 11:20:52 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 475d30677d45fc241c276b9fb46b914b6e89e5e6 Author: Alan Garny '' Date: Fri Mar 25 10:15:35 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9542ace9e1d45a211f73214f4e52d83ba9fb350f Author: Alan Garny '' Date: Thu Mar 24 17:33:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' This is to get 'opencor://openFiles/FileName1|FileName2|FileName3' to work properly. commit 8ac02790571bc554610de2ce3252a355f8b2b6ff Author: Alan Garny '' Date: Thu Mar 24 14:56:49 2016 +0100 Single Cell view: fixed a problem with OpenCOR crashing when saving a ''\''new'\''' CellML file '(closes' '#919).' commit 8afeea79360acf411710482e314e3406b6342b6a Author: Alan Garny '' Date: Thu Mar 24 14:52:17 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit f3b57832114d023def3367f7fef77583e9fee454 Author: Alan Garny '' Date: Thu Mar 24 14:34:11 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e57e264fbff936c404dcf36b7c4a1a9d37c4e221 Author: Alan Garny '' Date: Thu Mar 24 14:07:07 2016 +0100 jQuery: upgraded to version 2.2.2 '(closes' '#924).' commit bb135e0d773b2ed60e2d7e62c9c6b0f2b88f459a Author: Alan Garny '' Date: Thu Mar 24 09:30:35 2016 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 0db89bf928b75a6fd9ce1c7af56eea097523e879 Author: Alan Garny '' Date: Sat Mar 19 16:53:35 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 990dcc7a0be6abbcbb6a841f200403bb3e1074fb Author: Alan Garny '' Date: Sat Mar 19 15:41:48 2016 +0100 Travis CI: now use the '(beta)' Ubuntu 14.04 LTS build environment. commit 14f5be5910e9c89c0f11ed2818a08312e89c0806 Author: Alan Garny '' Date: Sat Mar 19 15:31:11 2016 +0100 Travis CI: now use the '(beta)' Ubuntu 14.04 LTS build environment. commit 26d3c11814d979b1a5673e2d8883eee5ff45ab6b Author: Alan Garny '' Date: Sat Mar 19 15:22:32 2016 +0100 Travis CI: now use the '(beta)' Ubuntu 14.04 LTS build environment. commit 861f6b2419b43d68379c3e573166482af4732e8b Author: Alan Garny '' Date: Sat Mar 19 15:02:54 2016 +0100 Travis CI: now use the '(beta)' Ubuntu 14.04 LTS build environment. commit f45c033a46b8b76b8f5c1b885bd1acd1798726d9 Author: Alan Garny '' Date: Sat Mar 19 14:59:58 2016 +0100 Travis CI: now use the '(beta)' Ubuntu 14.04 LTS build environment. commit 56277d928ec2870e48dd866d86d8eaa093efc714 Author: Alan Garny '' Date: Sat Mar 19 14:54:22 2016 +0100 Travis CI: now use CMake 3.5. commit 84fe1b8104b3621c9087fd47b99b98e04a82ac3f Author: Alan Garny '' Date: Sat Mar 19 14:34:40 2016 +0100 Travis CI: homebrew now uses Qt 5.6, which 'doesn'\''t' have Qt WebKit anymore, so simply disable OS X for now. commit b91e07172890c530cc31cfaf94524e93f79042d1 Author: Alan Garny '' Date: Sat Mar 19 14:10:40 2016 +0100 Refer to Peter $'Hunter\342\200\231s' CellML/OpenCOR/PMR tutorial '(closes' '#654).' commit d25a87fb4ea62c94baa17f18dc83628116dfddc5 Author: Alan Garny '' Date: Sat Mar 19 13:57:51 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e729da718946b1c43d92a829997108cc667cd059 Author: Alan Garny '' Date: Fri Mar 18 17:22:33 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1d263d98bc3fad601ed7feba4b4e467576923dc5 Author: Alan Garny '' Date: Fri Mar 18 15:48:22 2016 +0100 Single Cell view + SED-ML: fixed a problem with opening a CellML model from a SED-ML file not working when there are spaces in the file name '(closes' '#922).' commit 3c86e1a82a5aa5eaa66b2f961c662390a654b5a4 Author: Alan Garny '' Date: Fri Mar 18 15:43:45 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3fb533efba17716c0465a903cab758f6e7bf6de6 Author: Alan Garny '' Date: Fri Mar 18 15:26:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9a0d290675e435c99121405e7bba091a066a0c25 Author: Alan Garny '' Date: Thu Mar 17 18:13:24 2016 +0100 CellML Text view: fixed a small problem with saving a new CellML file '[ci' 'skip].' commit 169a7bb79d0c4d43669c3f72b7dc31f87e3e50bc Author: Alan Garny '' Date: Thu Mar 17 18:10:35 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit be07f224c102243ffe65c6fb28d86ee0d4c9f8f1 Author: Alan Garny '' Date: Thu Mar 17 17:36:37 2016 +0100 Single Cell view + SED-ML: fixed a small problem with trying to close OpenCOR when opening a SED-ML file '[ci' 'skip].' commit f6c7fb95522bc42aa8d71c440529fa9e11d96846 Author: Alan Garny '' Date: Thu Mar 17 17:35:51 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit f0b0d0ffd5325aa342413968560d09a7a0110403 Author: Alan Garny '' Date: Thu Mar 17 17:27:05 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ce534b86982378efc48f431e673d648b368fba81 Merge: e3c8de4d7 45ca46f92 Author: Alan Garny '' Date: Thu Mar 17 17:26:27 2016 +0100 Merge pull request '#921' from opencor/issue920 Single Cell view + SED-ML: fixed an issue with boolean solver properties not being correctly retrieved from a SED-ML file '(closes' '#920).' commit e3c8de4d7f508e10b28cea1c1e057e37caa0ea23 Author: Alan Garny '' Date: Thu Mar 17 16:57:32 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit 45ca46f923a39ca18e09865f8e09aef147e13df9 Author: Alan Garny '' Date: Thu Mar 17 16:46:51 2016 +0100 Single Cell view + SED-ML: fixed an issue with a different behaviour being observed simulating a CellML model directly vs a SED-ML file '(#920).' commit 5f51fcd1c136bc83a5b5da3f24fb7db22e5af5de Author: Alan Garny '' Date: Wed Mar 16 14:20:07 2016 +0100 Slight update to the developer documentation '[ci' 'skip].' commit d8637b07acee0e351e5af3daba86fda0193848c5 Author: Alan Garny '' Date: Tue Mar 15 23:55:40 2016 +0100 Core plugin: fixed a small problem with the tab icon used for 'a(n' 'unzipped)' file that has been deleted '[ci' 'skip].' Say that you have open a local OMEX file containing a SED-ML file. Say now that you open the CellML file associated with the SED-ML file. From there, close the OMEX file. Now, the tab icon for the CellML file will be a lock while there should be no icon. commit ffecdf0b3dd8a04359a0ffef830bab211473ab61 Author: Alan Garny '' Date: Mon Mar 14 22:12:38 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 37c6445b7770aaef9b58108d8161c1ea6d1c7612 Author: Alan Garny '' Date: Mon Mar 14 21:59:53 2016 +0100 Single Cell view + SED-ML: fixed a problem with not being able to open, close and re-open a remote CellML file associated with a SED-ML file '(closes' '#918).' commit 93f99573083eb5740f1f3faa33ca3dc5096a3abf Author: Alan Garny '' Date: Thu Mar 10 14:37:02 2016 +0100 Slight update to the developer documentation '[ci' 'skip].' commit f2e674a9d467f13e21ae78190768c624198b35f2 Author: Alan Garny '' Date: Thu Mar 10 14:07:08 2016 +0100 Some minor cleaning up of the documentation '[ci' 'skip].' commit ff70a9e6e271c06ca10a692fb7a50ddfaea56ee7 Author: Alan Garny '' Date: Thu Mar 10 11:49:08 2016 +0100 Some minor cleaning up of the documentation '[ci' 'skip].' Mainly replaced http:// with https:// wherever possible. commit 24e176292a0c7cd3e995059f18436e373c0cee2b Merge: ed8b1e277 4a0fc192e Author: Alan Garny '' Date: Wed Mar 9 17:14:46 2016 +0100 Merge pull request '#917' from opencor/issue916 QtSingleApplication: now use the version from Qt Solutions and not that from Qt Creator '(closes' '#916).' commit 4a0fc192eeb694d34d425506ec7e8707739f4da1 Author: Alan Garny '' Date: Wed Mar 9 16:32:57 2016 +0100 QtSingleApplication: now use the version from Qt Solutions and not that from Qt Creator '(#916).' commit ed8b1e27797b8032d1bd0a7ace4a66c57deeeecb Merge: d329e9698 7e93c278b Author: Alan Garny '' Date: Wed Mar 9 14:29:01 2016 +0100 Merge pull request '#915' from opencor/issue914 libgit2: upgraded to version 0.24 '(closes' '#914).' commit 7e93c278bf3f1ea311bd6314d2b18417c8c82865 Author: Alan Garny '' Date: Wed Mar 9 13:55:17 2016 +0100 libgit2: some work towards upgrading to version 0.24 '(#914).' commit 318110008b373bdef720cf08164a4ad2da747f58 Author: Alan Garny '' Date: Wed Mar 9 13:45:11 2016 +0100 libgit2: some work towards upgrading to version 0.24 '(#914).' commit 8afc629a89ef48b6771b9e725059f327659715c6 Author: Alan Garny '' Date: Wed Mar 9 13:38:52 2016 +0100 libgit2: some work towards upgrading to version 0.24 '(#914)' '[ci' 'skip].' commit 1a70ca2891e7b0daaaf2f384087c23cca9fa6e6d Author: Alan Garny '' Date: Wed Mar 9 13:23:57 2016 +0100 libgit2: some work towards upgrading to version 0.24 '(#914)' '[ci' 'skip].' commit 2fce2954c645e21d4f208ae06ca07e0586c4ef47 Author: Alan Garny '' Date: Wed Mar 9 13:12:03 2016 +0100 libgit2: some work towards upgrading to version 0.24 '(#914)' '[ci' 'skip].' commit d329e96987c6f71c51682ca8235187e0c7dca068 Author: Alan Garny '' Date: Wed Mar 9 11:37:44 2016 +0100 OpenSSL: upgraded to version 1.0.2g '(#910).' commit 629e2bc085078ce5942da44b7cacce250f7b78fa Author: Alan Garny '' Date: Wed Mar 9 11:32:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2441708cc50615e1356cd1e6e0c1b19d74a60819 Author: Alan Garny '' Date: Tue Mar 8 14:19:29 2016 +0100 Make sure that the tests pass on Windows 10 when using Qt 5.4.2 '[ci' 'skip].' commit 5887569d681411f1531602bd7fccf1989ddbf121 Author: Alan Garny '' Date: Mon Mar 7 17:30:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit a0a3c500090c7639a494422246d319313906c83f Author: Alan Garny '' Date: Mon Mar 7 17:09:44 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit c169b853346bf08cbbe79f5d639cc16c3a612f8a Author: Alan Garny '' Date: Mon Mar 7 16:42:41 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit cdfbd387fdfd62e88f1de2d8c74315a87f44f711 Author: Alan Garny '' Date: Mon Mar 7 16:09:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8040f5c7beb7f0a6c543eda3e906dd538386525b Author: Alan Garny '' Date: Mon Mar 7 16:09:13 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2bba6152348f5a51cd17f2388ea3a3105236c846 Author: Alan Garny '' Date: Mon Mar 7 15:43:53 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3884fc01ec934d5b017d880a4ab04ab5ff5d97ed Author: Alan Garny '' Date: Mon Mar 7 14:58:19 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit be2b4549d4258fb0e40597f89dd1512cadf6ee91 Author: Alan Garny '' Date: Mon Mar 7 14:51:16 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 81b708f088b98a865825b8a098bad86ac4937cc4 Author: Alan Garny '' Date: Sat Mar 5 01:06:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 96bba1265815ff9e8ce66d54812434794dbc3b40 Author: Alan Garny '' Date: Fri Mar 4 16:57:10 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 03850ae2a9588245aabc6d499e19f972a4807550 Author: Alan Garny '' Date: Wed Mar 2 11:38:28 2016 +0100 Fixed a small problem with trying to run another instance of OpenCOR '[ci' 'skip].' commit c9e35717aac3aeac916ffefebcefee6e79f5a3e5 Merge: cf55b28eb 810d46bfb Author: Alan Garny '' Date: Tue Mar 1 16:13:13 2016 +0100 Merge pull request '#911' from opencor/issue909 OpenCOR URL scheme: fixed a problem with OpenCOR firing up on ''\''old'\''' versions of OS X, but not opening the CellML/SED-ML file '(closes' '#909).' commit cf55b28eb3eb949a8fc962066946c19b5cd17527 Author: Alan Garny '' Date: Tue Mar 1 15:35:35 2016 +0100 Slight updates to our downloads pages '[ci' 'skip].' commit 810d46bfbd205353a8a7aa2a44880d8fd8164530 Author: Alan Garny '' Date: Tue Mar 1 15:28:28 2016 +0100 OpenCOR URL scheme: fixed a problem with OpenCOR firing up on ''\''old'\''' versions of OS X, but not opening the CellML/SED-ML file '(#909).' commit 3eb8a4d3254416cda4ebba5df9c4d9c12ee03189 Author: Alan Garny '' Date: Tue Mar 1 11:47:06 2016 +0100 Have a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' On OS X, to have CFBundleIdentifier '(in' 'Info.plist)' set to $'\342\200\234ws.opencor\342\200\235' is not enough. Indeed, we may have several copies of OpenCOR on $'someone\342\200\231s' system. So, OS X will choose whichever one it thinks is $'\342\200\230right\342\200\231.' So, to make things really unique, we add $'OpenCOR\342\200\231s' version, i.e. '“ws.opencor.${VERSION}”.' commit 4f12256c7e2249c885ae5a2f79f78c3650939910 Author: Alan Garny '' Date: Mon Feb 29 13:53:25 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 95e78e2ade3b64067b6fd3ad1f8a0519fc925d88 Author: Alan Garny '' Date: Mon Feb 29 09:55:49 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d93d8de21902933fced39fe4132f76070083334c Author: Alan Garny '' Date: Sun Feb 28 11:09:27 2016 +0100 Some cleaning up '(here' and 'there)' and some slight improvement '(see' 'MainWindow::handleArguments())' to the way we handle arguments that are passed to OpenCOR '[ci' 'skip].' commit e2068e8c6256b7c290f70de57fbc89443ffe6193 Author: Alan Garny '' Date: Sat Feb 27 21:09:50 2016 +0100 New snapshots. commit 9bfdab5dcc2434a95878fb1a6fabdeae4b2ac772 Merge: e716f2ae7 84e69d232 Author: Alan Garny '' Date: Sat Feb 27 21:06:42 2016 +0100 Merge pull request '#907' from opencor/issue903 Now have a URL scheme handler for OpenCOR '(closes' '#903).' commit e716f2ae73266de2191c39c561354895157181d2 Author: Alan Garny '' Date: Sat Feb 27 20:43:10 2016 +0100 Slight updates to the What is new and Downloads pages '[ci' 'skip].' commit 84e69d232b87b9594e545c159444cf1a62f913b7 Author: Alan Garny '' Date: Sat Feb 27 20:40:35 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903).' commit b491a3f450487c50258659b568276ff23aed1e38 Author: Alan Garny '' Date: Sat Feb 27 20:33:12 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903).' commit 210b09ef8065005a88ab39308dc85b84e46f765e Author: Alan Garny '' Date: Sat Feb 27 20:28:06 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903).' commit a09227a86e894c955d985fbecf837f96048133db Author: Alan Garny '' Date: Sat Feb 27 20:24:56 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903).' commit 9a8cccb45fbd5af2d4816b0783bd20c9bfa2bd98 Author: Alan Garny '' Date: Sat Feb 27 20:04:32 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit a3d3ba4a3a017b9a15089197ea1eb3ef8f899afc Author: Alan Garny '' Date: Sat Feb 27 19:10:46 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit bae573ec2d20b1cf97c1d1e39a6c1b0bfe6f8458 Author: Alan Garny '' Date: Sat Feb 27 19:01:21 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit 19aea112e250089314ad98f378a6354385b59a32 Author: Alan Garny '' Date: Sat Feb 27 17:51:06 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit 5a7007021bd04956d0d1efc31c3c095deff0e4fa Author: Alan Garny '' Date: Sat Feb 27 16:59:12 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit 73e661304ea5185a5570fb1cf5b27ee5b9efb5b1 Author: Alan Garny '' Date: Sat Feb 27 16:57:11 2016 +0100 Some work towards having a URL scheme handler for OpenCOR '(#903)' '[ci' 'skip].' commit 0700e6120d2a93b32dcfe3668ac08d2a3dc68aa3 Merge: eed43b841 a11a1077f Author: Alan Garny '' Date: Sat Feb 27 10:48:13 2016 +0100 Merge branch ''\''master'\''' into issue903. commit a11a1077f7f0f703b2bd1983bac9ab0bca6f33b3 Author: Alan Garny '' Date: Sat Feb 27 02:50:55 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by 'LLVM'\''s' execution engine '(#904).' Argh, now, 'it'\''s' on OS X that things 'don'\''t' build 'anymore!' commit 09175462f080f63467e8b59adfb7635c382a36d8 Author: Alan Garny '' Date: Sat Feb 27 00:39:19 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by 'LLVM'\''s' execution engine '(#904).' Oops, had forgotten to build on Windows and well... it 'didn'\''t' build 'properly!' commit 34901e11e4e40b7ecf139ee49f0302f817be719a Merge: 50529d93a e86548a86 Author: Alan Garny '' Date: Sat Feb 27 00:38:58 2016 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 50529d93ab931b2e1bd9dba606cb401356be9cea Author: Alan Garny '' Date: Sat Feb 27 00:07:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e86548a86f070a4cc9d85999279ae0f716b0b666 Author: Alan Garny '' Date: Sat Feb 27 00:07:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit eed43b841c83aa7b07690f1f961d086932be1249 Merge: a13f483fb dec645268 Author: Alan Garny '' Date: Fri Feb 26 20:19:15 2016 +0100 Merge branch ''\''master'\''' into issue903. commit dec645268025bceb6fe1f9f330b00794116412e0 Merge: 892937079 0ff917a25 Author: Alan Garny '' Date: Fri Feb 26 20:18:05 2016 +0100 Merge pull request '#906' from opencor/issue904 Compiler engine: fixed a problem with OpenCOR crashing on Linux due to an external function not being found by 'LLVM'\''s' execution engine '(closes' '#904).' commit 892937079dd3fa215d9156e00723d5886d3b26ee Author: Alan Garny '' Date: Fri Feb 26 19:51:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit c8d388471785e87e908a804fdfc5d61ace5447bf Author: Alan Garny '' Date: Fri Feb 26 19:30:37 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit 0ff917a25d16b3ae9164f54add5f2bdb4171e306 Author: Alan Garny '' Date: Fri Feb 26 19:18:33 2016 +0100 Compiler engine: fixed an issue with OpenCOR crashing on Linux due to an external function not being found by 'LLVM'\''s' execution engine '(#904).' commit bd1b6a6b6e1641d8f55a4780afa83c7615e66b79 Author: Alan Garny '' Date: Fri Feb 26 19:12:06 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d29bd074cdf8f655581c100c8433b18d3623365c Merge: 6cd3969e3 41a89c688 Author: Alan Garny '' Date: Fri Feb 26 14:48:57 2016 +0100 Merge pull request '#905' from dbrnz/renamebsml BioSignalML: made the code style more in line with the rest of the OpenCOR code '(#856)' '[ci' 'skip].' commit 6cd3969e35c8c63fee6feda48ff54abfb2402f4c Author: Alan Garny '' Date: Fri Feb 26 14:13:21 2016 +0100 Some minor updates to the developer documentation '[ci' 'skip].' commit 532c46edc0ba9d8c5fa5d425fdc4bd1466ae3da8 Author: Alan Garny '' Date: Fri Feb 26 13:42:57 2016 +0100 Plugin resources: rename them to address a Linux issue '[ci' 'skip].' Ideally, we would have our resource files named i18n.qrc.in and ui.qrc for all our plugins, but this is causing problems on Linux with Qt apparently accepting only one file called i18n.qrc.in or ui.qrc. The end result is that, on a development machine, plugin resources '(e.g.' icons, 'translations)' are not available while, strangely enough, they are on a deployment machine... commit 3a569a316ac80cf04af03d263b93a796ed551163 Author: Alan Garny '' Date: Fri Feb 26 09:37:54 2016 +0100 Plugin resources: rename them to address a Linux issue '[ci' 'skip].' Ideally, we would have our resource files named i18n.qrc.in and ui.qrc for all our plugins, but this is causing problems on Linux with Qt apparently accepting only one file called i18n.qrc.in or ui.qrc. The end result is that, on a development machine, plugin resources '(e.g.' icons, 'translations)' are not available while, strangely enough, they are on a deployment machine... commit 41a89c688ddf5d633c1808f3126abec220a076d8 Author: David Brooks '' Date: Fri Feb 26 17:46:18 2016 +1300 Update to '`typedobject' 'v1.1.1`' and '`biosignalml' 'v0.8.1`' releases. commit f9eb827ef687d87ca87d9210238ec7d8d9b42460 Author: David Brooks '' Date: Fri Feb 26 17:44:27 2016 +1300 'There'\''s' no need to add a '"Data"' postfix to the BioSignalML file name as the extension signifies the type of file. commit 6ab4d4177522e9d784007e4c4bc8a87e5c08512c Author: David Brooks '' Date: Fri Feb 26 17:43:00 2016 +1300 Encode all special characters when making a URI for the recording. commit 383c341febc78fc9c4219ae6c7a65d7404fc74c7 Author: David Brooks '' Date: Fri Feb 26 17:41:40 2016 +1300 '`handleAction()`' has become '`handleUrl()`.' commit f76504ef51c0448da9ad55f76b6df1cd75ccae2b Author: David Brooks '' Date: Fri Feb 26 10:58:58 2016 +1300 Use generic format for resource file. commit 2c6cb30b439d1d7482759b657fe0d75fd2bae431 Merge: 54e760f07 29fec8cc1 Author: David Brooks '' Date: Fri Feb 26 10:54:46 2016 +1300 Merge branch ''\''master'\''' into renamebsml commit 29fec8cc1cdf1deb0963c8017322b4412eba2cda Author: Alan Garny '' Date: Thu Feb 25 20:12:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit fdc94b96260fb5e5a342d13dd8b186ac01498296 Author: Alan Garny '' Date: Thu Feb 25 20:04:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 92328217f3de8d0c9990472ce7c448666ced924c Author: Alan Garny '' Date: Thu Feb 25 19:31:22 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 939fdb60537184377018c02a96e640b310d1807d Author: Alan Garny '' Date: Thu Feb 25 17:51:53 2016 +0100 Some minor cleaning up '[ci' 'skip].' This seems to be the reason why, on Linux, we $'can\342\200\231t' see some icons '(in' debug mode 'only!).' commit a94ca3ed42bbe70c0340b722c317e81da5056395 Author: Alan Garny '' Date: Thu Feb 25 17:30:13 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4e66c520a97cdfaa72016f440c276eaf5cd01de7 Author: Alan Garny '' Date: Thu Feb 25 17:25:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 7876a88c082024c86c8e1093120d4ce0751e8b40 Author: Alan Garny '' Date: Thu Feb 25 17:20:12 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8275c58b577c534a9755b3993c616e61d2eef1ca Author: Alan Garny '' Date: Thu Feb 25 14:56:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' We are only supporting 64-bit systems, $'so\342\200\246' commit a13f483fb5adc82e38ef89fd6fd87e14c0f420ca Author: Alan Garny '' Date: Thu Feb 25 10:22:44 2016 +0100 Single Cell view + SED-ML: make it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit 050543683fbddcda401a4e98278407c1f22433bf Author: Alan Garny '' Date: Thu Feb 25 10:15:27 2016 +0100 Single Cell view + SED-ML: make it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' Also allow editing views that $'don\342\200\231t' support any MIME type in particular. commit 4e6c8b5be2681b35013d0e583e92b2f5af22b003 Author: Alan Garny '' Date: Thu Feb 25 10:01:30 2016 +0100 Some work towards having a URL protocol handler for OpenCOR '(#903)' '[ci' 'skip].' commit c396e9bc8f3b0350d5f5b91cf3fae2fc5ac624ff Author: Alan Garny '' Date: Wed Feb 24 18:07:47 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 72920e90bea129743eb69d16f525bc43db153ab0 Author: Alan Garny '' Date: Wed Feb 24 18:06:02 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit f5ce511f1a19504eca5114c11fa2d6c6288fbb67 Author: Alan Garny '' Date: Wed Feb 24 18:05:34 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e8c6dbcf68f628b41dbd0989a5fad7b2ce9a5917 Author: Alan Garny '' Date: Wed Feb 24 18:04:06 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 5df157402162ebd535c6ab705316b78019d1b40a Author: Alan Garny '' Date: Wed Feb 24 16:43:24 2016 +0100 Some work towards having a URL protocol handler for OpenCOR '(#903)' '[ci' 'skip].' commit d7796b7a6b0183ef995862ad4b29c0f64821cb8d Author: Alan Garny '' Date: Wed Feb 24 14:44:12 2016 +0100 Some work towards having a URL protocol handler for OpenCOR '(#903)' '[ci' 'skip].' commit e61161f2b239c56897c60f152b2fe70872183326 Author: Alan Garny '' Date: Tue Feb 23 17:53:59 2016 +0100 Some work towards having a URL protocol handler for OpenCOR '(#903)' '[ci' 'skip].' commit 4698d852c827a367c0439415dffb3da38f6c2069 Author: Alan Garny '' Date: Tue Feb 23 17:26:55 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e6ecc23768b815aff9a2dffd78295d81b674ab83 Author: Alan Garny '' Date: Tue Feb 23 14:49:30 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4f305f21ce733d412ccd59e44010b3dc2d72edfb Author: Alan Garny '' Date: Tue Feb 23 14:42:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 214600b7fe86faead07f3e6a60258dcd3e094c56 Author: Alan Garny '' Date: Tue Feb 23 14:39:07 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit c27e3b925ff278eca2505d72b7d619aade6b1be3 Author: Alan Garny '' Date: Tue Feb 23 14:30:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 0743fb7af54caaf5f340b60011040d9d0747a880 Author: Alan Garny '' Date: Tue Feb 23 11:11:58 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit e281cbec8fd57d953510e9780f892e25d9fff6c5 Author: Alan Garny '' Date: Tue Feb 23 11:00:58 2016 +0100 Some work on refactoring the handling of OpenCOR actions '(#901)' '[ci' 'skip].' commit de29da98697d1269020000214cf3a2dae253660a Author: Alan Garny '' Date: Tue Feb 23 10:55:43 2016 +0100 Slight updates to our downloads pages '[ci' 'skip].' commit 345b94788ffc12847d590e8ba330bd78438f6cae Author: Alan Garny '' Date: Tue Feb 23 10:53:00 2016 +0100 jQuery: upgraded to version 2.2.1 '(closes' '#902).' commit 82536caa5c8df9034acbe569596971828ca7c2de Author: Alan Garny '' Date: Tue Feb 23 10:44:39 2016 +0100 Some work on refactoring the handling of OpenCOR actions '(#901)' '[ci' 'skip].' commit 1318ce640ab34b017fe38a4962a8fb5c666e2238 Author: Alan Garny '' Date: Tue Feb 23 10:44:20 2016 +0100 Some work on refactoring the handling of OpenCOR actions '(#901)' '[ci' 'skip].' commit 17b24391673ad5f0d503c88ba4ab87606523b7a2 Author: Alan Garny '' Date: Tue Feb 23 10:44:00 2016 +0100 Some work on refactoring the handling of OpenCOR actions '(#901)' '[ci' 'skip].' commit e1565fd98be7fc86a64850cf002e777efd5391d1 Author: Alan Garny '' Date: Tue Feb 23 10:31:17 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit aa190af90ccad9bfed00ee5d112e2f4c0d22b103 Author: Alan Garny '' Date: Tue Feb 23 09:58:02 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 04abd19bccbf92d162b1a2ca1d9e4c8dfebd4ea6 Author: Alan Garny '' Date: Tue Feb 23 09:55:44 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 15762ba1031f8419f8bcc064e91b75acaf607e38 Author: Alan Garny '' Date: Mon Feb 22 18:31:15 2016 +0100 New snapshots. commit a6a3ce3b28af6ae4777f2de9309a72ca91619242 Merge: 5c1c082bb 04230b9d3 Author: Alan Garny '' Date: Mon Feb 22 18:28:55 2016 +0100 Merge pull request '#900' from opencor/issue895 Single Cell view + SED-ML: can now open a CellML file referenced in a SED-ML file or a COMBINE archive '(closes' '#895).' commit 5c1c082bb78755b4b2b65ddbccfd92be4cb5bb34 Author: Alan Garny '' Date: Mon Feb 22 18:19:19 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit 04230b9d308b52462374fa9e99a264b75a9341a4 Author: Alan Garny '' Date: Mon Feb 22 18:05:33 2016 +0100 Single Cell view + SED-ML: can now open a CellML file referenced in a SED-ML file '(#895).' commit 539d4e674ded0fedbd44ed0db0da07687f3c6957 Author: Alan Garny '' Date: Mon Feb 22 17:26:32 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit 173e669f5fe344f662a5cafa1186cb5801a91e3b Author: Alan Garny '' Date: Mon Feb 22 17:26:09 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit 80896378c3cc7becab3cfdfcd8bbb905574f02de Author: Alan Garny '' Date: Mon Feb 22 17:16:47 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit e1fea8589fbfc7ea76bbcbf90b60d8616d142e21 Author: Alan Garny '' Date: Mon Feb 22 16:58:02 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit a6417f8286888aba5521bf731d48a59138b56a24 Author: Alan Garny '' Date: Mon Feb 22 16:29:12 2016 +0100 Single Cell view + SED-ML: some work on making it possible to open a CellML file referenced in a SED-ML file '(#895)' '[ci' 'skip].' commit 8b6f7c0606eb929969745801278fa14dc8ed672c Merge: a984620b1 17c39c1b4 Author: Alan Garny '' Date: Mon Feb 22 16:25:54 2016 +0100 Merge pull request '#899' from opencor/issue893 Remote files: now handle 3xx redirection headers '(closes' '#893).' commit a984620b18e7ded6b7a71a2863c4b46c05ed655c Author: Alan Garny '' Date: Mon Feb 22 15:54:33 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit 17c39c1b4a234a8bf36dcb06a40fd1ac61058d2f Author: Alan Garny '' Date: Mon Feb 22 15:49:05 2016 +0100 Remote files: now handle 3xx redirection headers '(#893).' commit 12f015de0882999d0a46210c442d2bcbb1ff82e9 Merge: 483a37015 9118639be Author: Alan Garny '' Date: Mon Feb 22 15:34:36 2016 +0100 Merge pull request '#898' from opencor/issue894 Single Cell view + SED-ML: to open a remote SED-ML file 'doesn'\''t' work with relatively specified sources '(closes' '#894).' commit 483a37015d220456cf081a642bf20564ccf1923d Author: Alan Garny '' Date: Mon Feb 22 15:03:12 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit 9118639be903e2286e8866ef7db7ae564513747f Author: Alan Garny '' Date: Mon Feb 22 14:59:53 2016 +0100 Single Cell view + SED-ML: fixed a problem with opening a remote SED-ML file not working with relatively specified sources '(#894).' commit bb2f4d8437f149fa9b3c7f11301329f9d6db5666 Author: Alan Garny '' Date: Mon Feb 22 14:59:32 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ed82ec52556136dd017f77c936efbe6b8a20023f Author: Alan Garny '' Date: Mon Feb 22 14:52:07 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b4c0dcb912b5d4496a0b46ff2e89a69ab2a20843 Author: Alan Garny '' Date: Mon Feb 22 14:36:00 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 37eedffe9d9b5c8557bd79d03ec8b8c98a9c0326 Merge: c5b57974a 31afec03a Author: Alan Garny '' Date: Mon Feb 22 14:35:04 2016 +0100 Merge pull request '#897' from opencor/issue896 Single Cell view + SED-ML: the URL of a model is wrongly formatted on Windows '(closes' '#896).' commit c5b57974a249e45280b430fd1617d73fe833991c Author: Alan Garny '' Date: Mon Feb 22 14:01:08 2016 +0100 Slight updates to our downloads pages '[ci' 'skip].' commit 31afec03afb006712a0abab3d50cf10630c778cc Author: Alan Garny '' Date: Mon Feb 22 13:52:18 2016 +0100 Single Cell view + SED-ML: fixed a problem with the URL of a model being wrongly formatted on Windows '(#896).' commit 370b0dd0d7784df9f7e2798fcc644b9f169a30bd Author: Alan Garny '' Date: Fri Feb 19 17:47:42 2016 +0100 Argh, had forgotten to export the CombineArchiveFile class '[ci' 'skip].' commit c325e25d4bc324d66be24a81e915d2e8a5ce2bdc Author: Alan Garny '' Date: Fri Feb 19 17:31:33 2016 +0100 New snapshots. commit 23f770faf2b9ac1f5628a0bb197702e4cf9fa244 Author: Alan Garny '' Date: Fri Feb 19 17:31:08 2016 +0100 Some minor updates to the user documentation '[ci' 'skip].' commit de94374bf1a0988e0859e24c9184f9a894accd5c Author: Alan Garny '' Date: Fri Feb 19 17:22:03 2016 +0100 Slight updates to the downloads page '[ci' 'skip].' commit 4aee0e5846d90858ab8fde2234963db441f6f86f Merge: 5b0db74a1 c21bd1ef0 Author: Alan Garny '' Date: Fri Feb 19 17:21:17 2016 +0100 Merge pull request '#892' from opencor/issue825 Single Cell view + SED-ML: import a basic simulation from SED-ML '(closes' '#825).' commit c21bd1ef08a6e8fcf5bf5fbf7fedf2788d05c44f Author: Alan Garny '' Date: Fri Feb 19 16:45:59 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit e02686d72b1392882dcc60cfc36bc172c9cedb79 Author: Alan Garny '' Date: Fri Feb 19 16:14:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit aa06783983371f5d8622e21df42e4fe7db65e1ee Author: Alan Garny '' Date: Fri Feb 19 16:11:22 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b62b22f139f1dc44edb27ebaf4d586a9ddad3473 Author: Alan Garny '' Date: Fri Feb 19 15:47:44 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 20a5b680161cd2f9be2ecc45f35f01814eaf2d26 Author: Alan Garny '' Date: Fri Feb 19 14:51:47 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit baadb5e151ad6f43c6e4136c3905ffc90381e19f Author: Alan Garny '' Date: Fri Feb 19 14:49:07 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit d2ab7ca9c76c3906605b8759b43a1617efd1b0af Author: Alan Garny '' Date: Fri Feb 19 14:10:57 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b5d910a2bdd7296a52bdb91416fe2d77e855a8da Author: Alan Garny '' Date: Fri Feb 19 13:59:10 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 1583e015923490e67d517da833f5d85a184ee81d Author: Alan Garny '' Date: Fri Feb 19 13:53:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit dc98af9aa17f74b62fb3df2a0ea84bd1cde37641 Author: Alan Garny '' Date: Fri Feb 19 13:29:05 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2dfcbe8363a9a5622daf4b82aef7020cb4035024 Author: Alan Garny '' Date: Fri Feb 19 13:08:20 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1258a93711d975fa80165b1a4138931323ff9016 Author: Alan Garny '' Date: Fri Feb 19 13:04:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit fab6f9d7d1f618e1e1736f7ab1a9b7f37d0cb05f Author: Alan Garny '' Date: Fri Feb 19 11:54:36 2016 +0100 Single Cell view + SED-ML: fixed a small problem with the creation of variable targets '[ci' 'skip].' commit 4eef3b6e722ff5425d162f70e8ec12080dbf4f3b Author: Alan Garny '' Date: Fri Feb 19 11:53:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 5db426d1165a6f313588c59fe5c595747159bda6 Author: Alan Garny '' Date: Fri Feb 19 11:53:31 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 35f50b4d436cbdfd784973dc0a9978ff7337d1ae Author: Alan Garny '' Date: Fri Feb 19 10:37:54 2016 +0100 Single Cell view: revisiting the loading/saving of some settings '[ci' 'skip].' The settings in question are the collapsed state of our collapsible widget, and the $'columns\342\200\231' width of our property editors. commit 121eaf654f0de57efea1557e2723614624d7bc76 Author: Alan Garny '' Date: Fri Feb 19 10:04:13 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 6bbe034959ddd7479f2a5e70ab58e9039463d8dd Author: Alan Garny '' Date: Thu Feb 18 19:28:05 2016 +0100 Single Cell view: revisiting the loading/saving of some settings '[ci' 'skip].' The settings in question are the collapsed state of our collapsible widget, and the $'columns\342\200\231' width of our property editors. commit 8099909cc073fdc5927db0c4d494b5386f8dcf78 Author: Alan Garny '' Date: Thu Feb 18 18:46:24 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 15bfdb7fe24c5f5f247d6ffcd61306dfad77e3af Author: Alan Garny '' Date: Thu Feb 18 18:24:04 2016 +0100 Single Cell view: revisiting the loading/saving of some settings '[ci' 'skip].' The settings in question are the collapsed state of our collapsible widget, and the $'columns\342\200\231' width of our property editors. commit b44dba6d8f9d4c848b0fff2558ef8f041c16cad6 Author: Alan Garny '' Date: Thu Feb 18 17:11:18 2016 +0100 Single Cell view: revisiting the loading/saving of some settings '[ci' 'skip].' The settings in question are the collapsed state of our collapsible widget, and the $'columns\342\200\231' width of our property editors. commit 2b727d8875f983b13287870602dd0eaaf6c78480 Author: Alan Garny '' Date: Thu Feb 18 16:41:00 2016 +0100 Single Cell view: revisiting the loading/saving of some settings '[ci' 'skip].' The settings in question are the collapsed state of our collapsible widget, and the $'columns\342\200\231' width of our property editors. commit f1ca40b6d4f62dc636ffeae02b1d1e1ec107d937 Author: Alan Garny '' Date: Thu Feb 18 16:35:44 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 6e58ad81828e1346e11dc1671c2ffdb0d7c4c6a3 Author: Alan Garny '' Date: Thu Feb 18 16:30:43 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e6c79cca516e3bbd60cb6e41c71512ff47afa521 Author: Alan Garny '' Date: Thu Feb 18 10:47:13 2016 +0100 Some minor cleaning up '[ci' 'skip].' Removed some classes/functions that are not used by PropertyEditorWidget anymore. commit f3c1710d042877375f91e58f72b27a391fa285e3 Author: Alan Garny '' Date: Wed Feb 17 18:32:42 2016 +0100 Single Cell view: can now duplicate a CellML file, SED-ML file and COMBINE archive, and save it '[ci' 'skip].' commit 04e965c9140697a93091b1fe8ab70114ebf06205 Author: Alan Garny '' Date: Wed Feb 17 18:30:16 2016 +0100 Standard file manager: revised 'StandardFileManager::isFile()' so that it 'doesn'\''t' consider new files being necessarily of the right type '(useful' when duplicating a 'file)' '[ci' 'skip].' Related to issue '#891.' commit 12810ed745ef97bbacc8d8fffeae29bd082163f0 Author: Alan Garny '' Date: Wed Feb 17 17:49:50 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1c9b1160354deba3a1d76eb28a3f260e1779168f Author: Alan Garny '' Date: Wed Feb 17 17:26:05 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 53a96e818eee209df06532d3d36269787bf395af Author: Alan Garny '' Date: Wed Feb 17 17:02:42 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8343f049d1a8a2d3b47d1de6be5000e284fa9bae Author: Alan Garny '' Date: Wed Feb 17 16:19:55 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 095bad5e5d54be28cc5d5ec0fa62d4247885a5b3 Author: Alan Garny '' Date: Wed Feb 17 16:00:09 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 237726e643c31184947833738911b115e75c0135 Author: Alan Garny '' Date: Wed Feb 17 15:58:24 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 0a3892c9db2a012b84dc9185c4f02aba0ee1e444 Author: Alan Garny '' Date: Wed Feb 17 15:43:04 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e109b319ca034ce73c1c37a1591c1b5ea345f9c9 Author: Alan Garny '' Date: Wed Feb 17 15:25:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3e9154103fa15953466c4e7bb8263247d617d02a Author: Alan Garny '' Date: Wed Feb 17 14:52:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ee0036d2b4eeb60e4478605c40b6e72db954764f Author: Alan Garny '' Date: Wed Feb 17 14:46:38 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 21f8c454c4c762e556051640830261b6716d636f Author: Alan Garny '' Date: Wed Feb 17 14:45:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 052aa186600c9d4daf14347190fa6fe00d019442 Author: Alan Garny '' Date: Wed Feb 17 14:33:10 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e17719ac5436a49bca96e841ae6a04647ce512cd Author: Alan Garny '' Date: Wed Feb 17 14:31:01 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4b752f2c0f0813382e70f76c40752ac2fbf7201b Author: Alan Garny '' Date: Wed Feb 17 14:27:02 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e26609763783766db00d9087ab11efed37d6225f Author: Alan Garny '' Date: Wed Feb 17 14:21:50 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit a2b4fd2177246bfc67bc2e538b24c7585fa7339d Author: Alan Garny '' Date: Wed Feb 17 14:16:12 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3393fa3688349049f074db6fe6109b2a8bc1c2c3 Author: Alan Garny '' Date: Wed Feb 17 11:32:29 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 5e9fd6618f9e2524f459d2861456208a12a88693 Author: Alan Garny '' Date: Wed Feb 17 11:11:31 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 1fb253ffb0392d37c35966a34634e3225a2e8ede Author: Alan Garny '' Date: Wed Feb 17 10:57:36 2016 +0100 Standard file manager: revised 'StandardFileManager::isFile()' so that it 'doesn'\''t' consider new files being necessarily of the right type '(useful' when duplicating a 'file)' '[ci' 'skip].' Related to issue '#891.' commit f92e21f979aab64df21047fa414031ff9627af70 Author: Alan Garny '' Date: Wed Feb 17 10:55:47 2016 +0100 Single Cell view: make it accept the SED-ML and COMBINE MIME types '[ci' 'skip].' Somewhat related to issue '#891.' commit f94555468760f5243c4ba46910bac81df606d158 Author: Alan Garny '' Date: Wed Feb 17 10:54:42 2016 +0100 Fixed a regression issue with regards to retrieving the filters to use to open/save a file '[ci' 'skip].' commit 6ba00ceb49d591915ec66691791d5033e4bfff7c Author: Alan Garny '' Date: Wed Feb 17 10:53:16 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9fcb752a2741dbb2a0cfe5ad74a716b026b021a3 Author: Alan Garny '' Date: Wed Feb 17 10:24:32 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8121f796127452d56bec3bcbb145ce84cf169301 Author: Alan Garny '' Date: Tue Feb 16 19:43:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit fe897f2c2e55269cfedcdb26834460a8a74aaeed Author: Alan Garny '' Date: Tue Feb 16 18:43:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit acb582285dbb82c0fd439c51e3d804857921c1e2 Author: Alan Garny '' Date: Tue Feb 16 17:57:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 3a6cc32488f6c3f9cd5e53426893cf1ed9962a7c Author: Alan Garny '' Date: Tue Feb 16 17:39:49 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit dd5cec157be1ce0f9ac2f284b4926b0da35532f8 Author: Alan Garny '' Date: Tue Feb 16 15:29:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 88894d00f72db555115de1a9b0519d3845988881 Author: Alan Garny '' Date: Tue Feb 16 15:22:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 9aac99c274a9b739acf9715250dc754d86ba2080 Author: Alan Garny '' Date: Tue Feb 16 14:14:57 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2a7290a0d68cb00739f19659124c2228d4ba4fd0 Author: Alan Garny '' Date: Tue Feb 16 11:40:42 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 8d9aa6d88068144960bb29a85c1567a53de50df3 Author: Alan Garny '' Date: Tue Feb 16 11:35:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b46c2ae96c138b1b0ac47cd023319673f051acf1 Author: Alan Garny '' Date: Tue Feb 16 10:41:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e7b03d2058364f3ba17cfd8b867534f8041415b1 Author: Alan Garny '' Date: Mon Feb 15 17:51:38 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8611a321f0f097a6a60f77283d43816895c11cdd Author: Alan Garny '' Date: Mon Feb 15 17:34:12 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 11a3358687fbce51a11bc18d0c5e3cb4334c9759 Author: Alan Garny '' Date: Mon Feb 15 16:37:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit f8b9ff802d175b62aa226614d8387896de23d3cb Author: Alan Garny '' Date: Mon Feb 15 15:43:56 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit bf48476b18eeb512a2191f2c6999c6f103628ac9 Author: Alan Garny '' Date: Mon Feb 15 13:50:56 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 282baa062cf8f255d05f30278293f946fd3ff546 Author: Alan Garny '' Date: Mon Feb 15 13:31:10 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4f78c5588b4c0ee891164f4a9da2fcc87d4bd351 Merge: d1b65e983 5b0db74a1 Author: Alan Garny '' Date: Fri Feb 12 20:28:56 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 5b0db74a1b85183cf7322b810ab9776ae34dee17 Author: Alan Garny '' Date: Fri Feb 12 20:17:16 2016 +0100 Fixed a couple of issues with the downloads pages '[ci' 'skip].' commit c3b06fea8592e80a4c3e35d48d7de5399e886423 Author: Alan Garny '' Date: Fri Feb 12 20:02:51 2016 +0100 All of OpenCOR now gets disabled when the central 'widget'\''s' busy widget is showing '(closes' '#890).' commit d1b65e9838a2d71632e3b9367b003f7bfd8c13bc Author: Alan Garny '' Date: Fri Feb 12 18:06:18 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8548f3f6a91817338716cf99c58a762250062a3a Author: Alan Garny '' Date: Fri Feb 12 18:00:47 2016 +0100 Single Cell view: fixed a small problem with the listing of models for a graph '[ci' 'skip].' It was fine except for remote files, for which we were using the local file information rather than the remote 'one!' commit d6b3393dfac9177abf6bd88840dd824a2886109d Author: Alan Garny '' Date: Fri Feb 12 17:59:14 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 90c985bf8104109358806bc252e7f002df3da4a3 Author: Alan Garny '' Date: Fri Feb 12 17:41:48 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 93414dc6d62090b2c74b59e89078bcfd66634bea Author: Alan Garny '' Date: Fri Feb 12 17:25:04 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 49dc8e495e7686d132420e261cf92402e8bfe14e Author: Alan Garny '' Date: Fri Feb 12 16:54:20 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 58ea724a9b098bdb29908b6f8ee429d096d1ae5f Author: Alan Garny '' Date: Fri Feb 12 16:47:55 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 47943e600c78669fdd6fe2b09f220f5dae02b18f Author: Alan Garny '' Date: Fri Feb 12 15:23:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b7e53d8b27dff36df649a1f2556b5a63dc43cd77 Author: Alan Garny '' Date: Fri Feb 12 15:17:20 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 73a3bd48093a0e7f00b64e17e62530841339ef09 Author: Alan Garny '' Date: Fri Feb 12 14:42:35 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit d25c8d51c58d87d7145c59406995b5d77b14ae66 Author: Alan Garny '' Date: Fri Feb 12 13:48:43 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 35090878c7acd3bd30b7fa572422f8b50649b254 Author: Alan Garny '' Date: Fri Feb 12 13:44:52 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit c1db837235eabfa9fd0f63147866e5abfd39df95 Author: Alan Garny '' Date: Fri Feb 12 13:23:01 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 60b91a0d7b91b2ea8693c98ab96d41abbd8f0c6e Author: Alan Garny '' Date: Fri Feb 12 11:09:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 9749f959abe9ddd6fcc0061347826c0b04b049ae Author: Alan Garny '' Date: Fri Feb 12 11:09:04 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 294a2fbbb159517ec6693ee95737fafb286609d2 Author: Alan Garny '' Date: Fri Feb 12 10:25:22 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit cfd30aa5ff84aac6abe9d6c9011c8d9d5a7d8dea Author: Alan Garny '' Date: Thu Feb 11 18:58:41 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b7df1113574e94a940a0e2d357a759ce59cad91c Author: Alan Garny '' Date: Thu Feb 11 18:12:30 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit ae6b0a236ca7c143ddd510ed1dc63210401f12a9 Author: Alan Garny '' Date: Thu Feb 11 15:57:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 9bd188db709aec2cacc335a15ef5a59e00951bff Author: Alan Garny '' Date: Thu Feb 11 15:37:39 2016 +0100 Oops, slight oversight when it comes to our solution to issue '#888' '[ci' 'skip].' Our warning message was always shown even when there was no reported 'issue!' commit affdbe7949a82b76931c43d341487b3191b973f0 Author: Alan Garny '' Date: Thu Feb 11 15:30:20 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d9d6ef9696e51b66148efb4c314fca550c4663d5 Merge: e69d01c17 41fe86e4c Author: Alan Garny '' Date: Thu Feb 11 15:08:31 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 41fe86e4c00b8ccc5d7815c03cd3366f28217c7d Merge: 397da4358 55da5ee36 Author: Alan Garny '' Date: Thu Feb 11 15:07:40 2016 +0100 Merge pull request '#889' from opencor/issue888 CellML 1.1 validation: now warn the user that an issue may be related to an '(in)directly' imported CellML file '(closes' '#888).' commit 55da5ee36ccb979b91965cdc2e413a593230db98 Author: Alan Garny '' Date: Thu Feb 11 14:38:28 2016 +0100 CellML 1.1 validation: now warn the user that an issue may be related to an '(in)directly' imported CellML file '(#888).' commit e69d01c17dacb59fcbf8b41f8313c4eb0d9750d1 Author: Alan Garny '' Date: Thu Feb 11 13:33:49 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 26b04a39e0f65224030837e6cfc0c4c446cd2e14 Author: Alan Garny '' Date: Thu Feb 11 13:24:15 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit a190af9d9822a231b59803958ce31431ee745207 Author: Alan Garny '' Date: Wed Feb 10 18:02:11 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 871742442250cbf25af779e07b27a274bd7a1c99 Author: Alan Garny '' Date: Wed Feb 10 17:52:59 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit e911a762341bb1129d867872d4d546a5ca50a2c1 Author: Alan Garny '' Date: Wed Feb 10 17:50:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 5dbe5aeb527c461b7a7e51a25dd8bc48c10dcca2 Author: Alan Garny '' Date: Wed Feb 10 17:32:40 2016 +0100 Show our busy widget when reloading an indirect remote file '[ci' 'skip].' commit 9540c44c2ad1fcc13cfd3ace2633755a79f5e194 Author: Alan Garny '' Date: Wed Feb 10 17:15:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 431e361f4883035dccfa98a436ce54bf0fb4e0a7 Author: Alan Garny '' Date: Wed Feb 10 16:24:47 2016 +0100 Show our busy widget when reloading a remote file '[ci' 'skip].' commit 3eaea771e702a648bff4dd424af9e044f5fb755a Author: Alan Garny '' Date: Wed Feb 10 16:18:24 2016 +0100 Show our busy widget when reloading a remote file '[ci' 'skip].' commit 0b8290559e5b0d7334e2972a4cb6ed6f630f6e31 Author: Alan Garny '' Date: Wed Feb 10 15:59:06 2016 +0100 Show our busy widget when reloading a remote file '[ci' 'skip].' commit 2ac592f3f366427de35462bdec1c8ff3c30e6b65 Author: Alan Garny '' Date: Wed Feb 10 15:07:30 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9a624a512f7165c5e22741109e895dd196699a4c Author: Alan Garny '' Date: Wed Feb 10 14:50:53 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit e5fe1d3a551e906a0525d30062c8356fa602e4ab Author: Alan Garny '' Date: Wed Feb 10 14:26:24 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 1f89d22cca5aebbb624dfd18aef6655f9fa02713 Author: Alan Garny '' Date: Wed Feb 10 14:11:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 3f1c7a9b1249c608829836c4b3120c97fd0ffdd0 Author: Alan Garny '' Date: Wed Feb 10 13:50:32 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2f5ecb625f439a5412d2c7ecf8afc1f1b29caa10 Author: Alan Garny '' Date: Tue Feb 9 18:38:31 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 51674c65ae39317e015b0f0cb443f33619f80b2a Author: Alan Garny '' Date: Tue Feb 9 18:02:26 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 7ba8079af1f3aa3c0cf57c4f6abc7395d5fbef8c Author: Alan Garny '' Date: Tue Feb 9 17:54:11 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit 20dfbc005242a3c17a9c60801cbe3fa29cc068ac Author: Alan Garny '' Date: Tue Feb 9 17:04:47 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit 142aa68d9893132bcc3d4f681e6ba8880d429d8b Author: Alan Garny '' Date: Tue Feb 9 15:09:24 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit 98ec1c23974e5604fecb0dbbb7b7cdfec6449575 Author: Alan Garny '' Date: Tue Feb 9 13:28:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 567efc4400d8cbd9722c72b9f2b1ad03a9365b40 Author: Alan Garny '' Date: Tue Feb 9 11:03:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 17aa7935926789add015e27023f5de1d26275428 Author: Alan Garny '' Date: Tue Feb 9 10:31:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 416b797830e1788e7f6d541f2216c96ecd841cc1 Author: Alan Garny '' Date: Tue Feb 9 10:13:43 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit de0a7285a7188a1b5ec9f543791be1204a7f5e75 Author: Alan Garny '' Date: Mon Feb 8 19:52:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 08a490a051ade8ac79d5065c2f5f6473ac3598bf Author: Alan Garny '' Date: Mon Feb 8 19:15:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 50a0b613f88d5ea925b12366976bd7b5ec5c4075 Author: Alan Garny '' Date: Mon Feb 8 18:35:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 3807ab2329dd960f5ac7d2a56fc3221cf99e4e6b Author: Alan Garny '' Date: Mon Feb 8 18:26:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b16266e7cf3bf298d49204976226d161cee10837 Author: Alan Garny '' Date: Mon Feb 8 17:08:19 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2866eea5ef6dc9fb99879b20da917c0e0b20523a Author: Alan Garny '' Date: Mon Feb 8 16:50:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit bd7020003e96bfbbbc1956f6e56512168e6fbb7b Author: Alan Garny '' Date: Mon Feb 8 16:50:41 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit a4ca6be0378d808b689670d611001ec11f8a3c67 Author: Alan Garny '' Date: Mon Feb 8 16:12:52 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2fa55645e4f47dea9b4beafc2575b25acfb35e30 Author: Alan Garny '' Date: Mon Feb 8 16:00:19 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 06ff6c24ca8d84ae92044f40f7445e76c5ac936c Author: Alan Garny '' Date: Mon Feb 8 15:04:28 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 512ce3edd23c9ef35f9571079aa9e604e505a4de Author: Alan Garny '' Date: Mon Feb 8 14:42:26 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit c144445ebfe15e7744276c39210edcb295056cd2 Author: Alan Garny '' Date: Mon Feb 8 14:42:13 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8bb87cb8d37ff28dca4cf19bef1d8a300adb7e52 Author: Alan Garny '' Date: Mon Feb 8 10:33:02 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 397da43582eb1c5bf26e38ccddc30f9c9aac6a5b Author: Alan Garny '' Date: Sun Feb 7 11:28:33 2016 +0100 Slight updates to the user and downloads pages '[ci' 'skip].' commit bbd8894190c5901b297280a5609af4026acea2cb Merge: 1dd30d423 0494788f7 Author: Alan Garny '' Date: Sun Feb 7 11:20:31 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 0494788f7c5d93b60f435ba0830699c1f8a1be52 Merge: d38ed375f 76b89394d Author: Alan Garny '' Date: Sun Feb 7 11:14:40 2016 +0100 Merge pull request '#886' from opencor/issue885 Raw view: renamed it to Raw Text view '(closes' '#885).' commit 76b89394da4a34652d9ab10472a66ae003c721de Author: Alan Garny '' Date: Sun Feb 7 10:33:51 2016 +0100 Raw view: some work on renaming it to Raw Text view '(#885).' commit 03270a3dce0049ec95ebe1ddf3cd675f3913e7e8 Author: Alan Garny '' Date: Sun Feb 7 10:33:13 2016 +0100 Raw view: some work on renaming it to Raw Text view '(#885).' commit 15a16d2a6266100fbc1d5d6ce7e14c0d14981cc2 Author: Alan Garny '' Date: Sun Feb 7 09:56:11 2016 +0100 Raw view: some work on renaming it to Raw Text view '(#885)' '[ci' 'skip].' commit d38ed375f317b1ea739de77112d0646b13a0ef91 Author: Alan Garny '' Date: Sat Feb 6 00:35:54 2016 +0100 Slight updates to the user and downloads pages '[ci' 'skip].' commit 5ff1607ca5087d764a07cfd9b5abfbe0602724f3 Author: Alan Garny '' Date: Sat Feb 6 00:30:46 2016 +0100 Raw view: only allow text files '(closes' '#884).' commit d6873d134d9a7ebe9647af96cabaa476279cc78f Author: Alan Garny '' Date: Sat Feb 6 00:14:32 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 887fde18b63047af555b1655c1b4b95c7eac1597 Author: Alan Garny '' Date: Sat Feb 6 00:08:12 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1dd30d4238843139ee8c382342805a4a34d6ae3e Merge: 11bea6eeb b917e2e9b Author: Alan Garny '' Date: Fri Feb 5 22:09:01 2016 +0100 Merge branch ''\''master'\''' into issue825. commit b917e2e9b8de31c6168fb47de1a77e49913bdf79 Merge: 50123d759 a6b178480 Author: Alan Garny '' Date: Fri Feb 5 22:06:48 2016 +0100 Merge pull request '#883' from opencor/issue882 Fixed a problem with detecting file changes not working with non-text files '(closes' '#882).' commit a6b178480ba8419c51c8a3b27918ced8a0c5cd4e Author: Alan Garny '' Date: Fri Feb 5 21:20:53 2016 +0100 Fixed a problem with detecting file changes not working with non-text files '(#882).' commit 11bea6eeba4f407dad72db5ad5a86abc63523d91 Author: Alan Garny '' Date: Fri Feb 5 20:11:50 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 7391b0af1d8a386b1622a0f1dffa19b1b1acda6a Author: Alan Garny '' Date: Fri Feb 5 16:22:18 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 78b5a5bb6a72e9ce9e35d2039b9b20d3ba4926f1 Author: Alan Garny '' Date: Fri Feb 5 16:21:01 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 04d2408a1de4e112577b756e06122efe4e044bce Author: Alan Garny '' Date: Fri Feb 5 15:26:13 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 49b494356064d8a5a49b2a1cc4a0ba069259ffb0 Author: Alan Garny '' Date: Fri Feb 5 15:24:03 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 028598eff4a48c3a7d416d9d277af191afcdd5a8 Author: Alan Garny '' Date: Fri Feb 5 14:58:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 8a1da13bbf08ff617b84af2b235c73bdb1cd9625 Author: Alan Garny '' Date: Fri Feb 5 14:31:07 2016 +0100 Kind of reverting commit 59f3ce3 '(related' to issue '#868)' '[ci' 'skip].' Not only is it not needed anymore because of 'SingleCellViewGraphPanelPlotWidget::axesChanged()' and 'SingleCellViewGraphPanelPlotWidget::resetAxesChanged()' now being available, but our $'\342\200\230fix\342\200\231' resulted in the loop always starting at 0 '(!!),' meaning that we were always testing all of the data rather than just the new 'one!' In other words, the longer the simulation the more rugged the rendering. commit 93001bcada3192c33bf6a3562a4c89bd2bb1f272 Author: Alan Garny '' Date: Fri Feb 5 13:39:31 2016 +0100 Single Cell view: fixed a small problem following our work on issue '#590' '[ci' 'skip].' commit f8fb16b4f5c481463c804ac0fe28beb8f7d23f2a Author: Alan Garny '' Date: Fri Feb 5 11:05:16 2016 +0100 Single Cell view: fixed a small problem following our work on issue '#590' '[ci' 'skip].' commit edacae2f3ce4cfb8ba882e92d6ed0ffeee9c1ed7 Author: Alan Garny '' Date: Thu Feb 4 19:28:49 2016 +0100 Single Cell view: fixed a small problem following our work on issue '#590' '[ci' 'skip].' Say you have two CellML files A and B. In A, you set the delay as high as possible. In B, create a graph to plot something from A. Run A and switch straight to B. You will see that the plot for A to update in B, but the graph panel 'won'\''t' resize when necessary... commit ed0eec6945575bfc814b48ff73cbf76a2633a1b7 Author: Alan Garny '' Date: Thu Feb 4 18:00:39 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit a24cfe3a51327af3029bb8929b2418deed989e98 Author: Alan Garny '' Date: Thu Feb 4 17:12:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' SingleCellViewInformationGraphsWidget: that business of checking whether we can emit the 'graphsUpdated()' signal makes things unnecessarily complicated while, hopefully, it $'doesn\342\200\231t' bring much benefit, so removed $'it\342\200\246' commit ba6eab2ce1eab2741142375f9523b55c2624b52c Author: Alan Garny '' Date: Thu Feb 4 16:35:35 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 078e8c249af340c7a190b2c5e464193130609729 Author: Alan Garny '' Date: Thu Feb 4 16:03:47 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 68195577c0bbcf5da4e5c74e3b85a3e77bebe813 Author: Alan Garny '' Date: Thu Feb 4 16:00:53 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e8760b12dc52e86a8993cbe3cc9e8ee65d7b54cb Author: Alan Garny '' Date: Thu Feb 4 15:42:22 2016 +0100 Single Cell view: fixed a small problem with renaming a file '[ci' 'skip].' commit 5c0b27340433affb11c903c2a282046d27ae2cd6 Author: Alan Garny '' Date: Thu Feb 4 14:32:39 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 61550c7161e5121742133da34336817effdadf1d Author: Alan Garny '' Date: Thu Feb 4 14:15:22 2016 +0100 Some minor cleaning up '[ci' 'skip].' Single Cell view: removed an unnecessary argument from 'fileXXX()' methods. commit 8b18309bb8a24f6e5cc08920a0e381f24e60c1b7 Author: Alan Garny '' Date: Thu Feb 4 13:29:02 2016 +0100 Some minor cleaning up '[ci' 'skip].' Indeed, once a file has a view, it will keep having a view after being reloaded, even if $'it\342\200\231s' not of the right type anymore '(see' 'StandardFileManager::isFile()).' commit 29c698c5e4a5697946fdbad631da083b0b9da69b Author: Alan Garny '' Date: Thu Feb 4 11:56:21 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 07121e944ffbe316e3feb1e1c71dc2a916ae9a92 Author: Alan Garny '' Date: Thu Feb 4 11:55:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 89bf9f25a3393421e1a7a0ee5d6c753e98e80933 Author: Alan Garny '' Date: Thu Feb 4 11:45:06 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d521fd8ed4262e9dfd46db9617b9d40d88dbd3e6 Merge: ecf0f3a79 50123d759 Author: Alan Garny '' Date: Thu Feb 4 11:44:32 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 50123d7598894966569db55fdf150e61a08c2974 Author: Alan Garny '' Date: Thu Feb 4 11:43:21 2016 +0100 General: improved the retrieval of a save file name '(#881)' '[ci' 'skip].' commit ecf0f3a79c99bf9fdf1a8f3c0c6b10827b4daa59 Merge: f90af5d16 b500b0c36 Author: Alan Garny '' Date: Thu Feb 4 11:35:03 2016 +0100 Merge branch ''\''master'\''' into issue825. commit b500b0c36a3faa2e61ebc05878ebf26eb5774cb0 Author: Alan Garny '' Date: Thu Feb 4 11:33:17 2016 +0100 General: improved the retrieval of a save file name '(#881).' commit f90af5d1642bfce82a3f1400ea7ce196b67cfd2b Author: Alan Garny '' Date: Thu Feb 4 11:10:37 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit bd2c5cd08c1e7120707c472a510ad98be2ff7c45 Author: Alan Garny '' Date: Thu Feb 4 10:58:12 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 88f8960c7630815e84f5591a6a1d102d0a3eb53f Author: Alan Garny '' Date: Thu Feb 4 10:34:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e1403aed6df9b8aabb56b6c8a1ab1bfecd597a64 Author: Alan Garny '' Date: Wed Feb 3 18:58:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b8d061ccfc0b4cde23e57b0c66b148582cc8a0c7 Author: Alan Garny '' Date: Wed Feb 3 18:24:21 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit dab7c21ce271c4dd5f09c36b9919fb9236f03478 Author: Alan Garny '' Date: Wed Feb 3 18:08:43 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 05fcd0b1b6ce96b2f581c29324282551c5652e7f Author: Alan Garny '' Date: Wed Feb 3 17:40:58 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 51c265aea6ac481008a66236ccc3984d65ec960d Author: Alan Garny '' Date: Wed Feb 3 17:19:58 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit ca6c605c02dc61b4d1c8fb10c6b16d2f21e8f3d0 Author: Alan Garny '' Date: Wed Feb 3 17:18:03 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit f6c7d0950ed142a099436323709223bc9774cfaf Author: Alan Garny '' Date: Wed Feb 3 16:26:17 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 3208787c8aca9a0473bef94df92d3b1a5eb1ae28 Author: Alan Garny '' Date: Wed Feb 3 16:00:27 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit ce929a8336ded4fa9667092376e7b1039af8025a Author: Alan Garny '' Date: Wed Feb 3 15:47:54 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 1a3279bab0a8d20bfe416db663d8ea54d13cb815 Author: Alan Garny '' Date: Wed Feb 3 15:45:36 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit bdd2d241dfba6c90d673099ab7be23fa8bd76dc1 Author: Alan Garny '' Date: Wed Feb 3 15:41:22 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit f64619086cd7b93c017a3260bde4e2eb338eec68 Author: Alan Garny '' Date: Wed Feb 3 15:30:14 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit ddbc5bfb8907d4447b22c790b7a30867a5a12771 Author: Alan Garny '' Date: Wed Feb 3 15:27:31 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4159c461dbc89bc78017c5d81a17ee08d7d61470 Author: Alan Garny '' Date: Wed Feb 3 15:08:02 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 0a54f2d52bc07c70454738edf6e3a1761db15f47 Author: Alan Garny '' Date: Wed Feb 3 14:34:16 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit e7433ede63d181eab5a32143b55e1e0275bf7bda Merge: d6ac378f3 3dd993abf Author: Alan Garny '' Date: Wed Feb 3 14:24:20 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 3dd993abfa8e879811e4a845d8176b0b18d11b42 Author: Alan Garny '' Date: Wed Feb 3 14:23:48 2016 +0100 Reverting d175255990bbe1b5e68c61eba3693c932eb4bbd5 '[ci' 'skip].' A clean up gone wrong. We still definitely need this on OS 'X!' commit d6ac378f3f297f29543985afa27b08a0c36c43ca Author: Alan Garny '' Date: Wed Feb 3 13:33:30 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit ca711fb393e2c6a60e4c3dc8175eeef4bd933727 Author: Alan Garny '' Date: Wed Feb 3 13:33:04 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 756544842e6855179bd5adf0cec741d9e44feae1 Author: Alan Garny '' Date: Wed Feb 3 13:30:27 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ed119660e3783738b6cec4a52f457a0057494953 Author: Alan Garny '' Date: Wed Feb 3 11:02:39 2016 +0100 Slight update to the 'developer'\''s' documentation '[ci' 'skip].' commit 27cebeddb4dfa222e4447476c16c4b61d09db5d1 Author: Alan Garny '' Date: Tue Feb 2 17:19:21 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b0c3e4754792be438c12e6f9d21cb2a44e163016 Author: Alan Garny '' Date: Tue Feb 2 17:17:29 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 318267f96de93cf58873312343eab887533bd9ad Author: Alan Garny '' Date: Tue Feb 2 17:16:45 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 01f1e0bad5e2e7b1fbca1a75659fe6672cc65816 Author: Alan Garny '' Date: Tue Feb 2 16:24:44 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2d3cb62dc03199d118f0a7b72fde779d60e2bef9 Merge: 782b30dd9 f05a45132 Author: Alan Garny '' Date: Tue Feb 2 14:24:46 2016 +0100 Merge branch ''\''master'\''' into issue825. commit f05a4513284925eaa1d8f8e9281be4d7863703d3 Merge: 49c792297 d46af5902 Author: Alan Garny '' Date: Tue Feb 2 14:23:40 2016 +0100 Merge pull request '#880' from opencor/issue879 Single Cell view: fixed a small problem with the progress bar not always getting reset '(closes' '#879).' commit 49c792297b6b7d6d6f85ec9d35b7888b22f76fe3 Author: Alan Garny '' Date: Tue Feb 2 13:45:41 2016 +0100 Slight updates to our downloads page '[ci' 'skip].' commit d46af59022f674d639ce59c6de868bcffa9c2f24 Author: Alan Garny '' Date: Tue Feb 2 13:42:49 2016 +0100 Single Cell view: fixed an issue with the progress bar not always getting reset '(#879).' commit 782b30dd9696e1417d7852b167852943f05b7bd8 Merge: 914fe9264 57473db07 Author: Alan Garny '' Date: Tue Feb 2 10:37:41 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 914fe9264c73897d0a56947d71a979b2947e977c Author: Alan Garny '' Date: Mon Feb 1 17:41:50 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 57473db0727540d22c7fe5205b163da19b6aa7df Author: Alan Garny '' Date: Mon Feb 1 15:54:29 2016 +0100 New snapshots. commit 1064b63b8ad828edaad8b7180087e883577427a0 Author: Alan Garny '' Date: Mon Feb 1 15:48:27 2016 +0100 Slight update to our downloads page '[ci' 'skip].' commit f1617ea8acbf3ee61eeabf831db3d691f1c78545 Author: Alan Garny '' Date: Mon Feb 1 15:31:15 2016 +0100 Single Cell view: slight GUI improvement related to issue '#876' '[ci' 'skip].' commit 0492a8f1811e7c4c8cc32b9b7ddd4b8163887bc1 Merge: 05fce705e 68f8a11f9 Author: Alan Garny '' Date: Mon Feb 1 15:28:22 2016 +0100 Merge pull request '#878' from opencor/issue876 Single Cell view: fixed an incomplete plot and unreset progress bar for a finished simulation '(closes' '#876).' commit 68f8a11f9975c4e9e31ba70e0e8a190c22302486 Author: Alan Garny '' Date: Mon Feb 1 14:56:29 2016 +0100 Single Cell view: fixed an incomplete plot and unreset progress bar for a finished simulation '(#876).' commit 6ada961ee6486c6e2bb5519f51594f744c13a9d0 Author: Alan Garny '' Date: Mon Feb 1 14:21:17 2016 +0100 Single Cell view: some work on fixing an incomplete plot and unreset progress bar for a finished simulation '(#876)' '[ci' 'skip].' commit 05fce705e7e3e90986b29c708bca6b30d0b13ddc Author: Alan Garny '' Date: Mon Feb 1 14:00:40 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit bcddfa6d0138600e7c6650c434a9cfbda8308bdc Merge: 5a7b9a399 32cba7d50 Author: Alan Garny '' Date: Mon Feb 1 11:08:23 2016 +0100 Merge pull request '#877' from opencor/issue870 OpenSSL: upgraded to version 1.0.2f '(closes' '#870).' commit 32cba7d50a7ed79b18808955926854abba157ea0 Author: Alan Garny '' Date: Mon Feb 1 10:41:01 2016 +0100 OpenSSL: upgraded to version 1.0.2f '(#870).' commit 54e760f07b95d2dde14d650b5fc26bc9c325e277 Merge: 162193183 5a7b9a399 Author: David Brooks '' Date: Sun Jan 31 13:34:41 2016 +1300 Merge branch ''\''master'\''' into renamebsml commit 5a7b9a399069212d0c81dbcc262607f4e5087924 Author: Alan Garny '' Date: Sat Jan 30 10:20:17 2016 +0100 Sample view: fixed a regression issue that resulted in text being on top of itself '(closes' '#875).' commit 83609033f2b38e9a25d9cd0b2fdabbac0e9eab20 Author: Alan Garny '' Date: Sat Jan 30 09:59:45 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d175255990bbe1b5e68c61eba3693c932eb4bbd5 Author: Alan Garny '' Date: Sat Jan 30 09:49:18 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 1621931834ec3e30f846907d9b87f92aca4d87d0 Merge: 801dbd49c f6159c865 Author: David Brooks '' Date: Sat Jan 30 10:37:01 2016 +1300 Merge branch ''\''master'\''' into renamebsml commit f6159c86513544fdf7d6bd28b905fbe2d9b947c9 Author: Alan Garny '' Date: Fri Jan 29 17:44:52 2016 +0100 Oops, a small regression following our work on issue '#866' '[ci' 'skip].' commit 65c10b00ae299c47aa3cbefad7a7401bf9249b7b Author: Alan Garny '' Date: Fri Jan 29 17:07:23 2016 +0100 Slight updates to the downloads page '[ci' 'skip].' commit 9cae99675c1395f944a91382ed10259637e3e3f9 Author: Alan Garny '' Date: Fri Jan 29 17:04:35 2016 +0100 Single Cell view: fixed a small problem with the progress bar not always getting reset '(closes' '#874).' commit 89f8d22cb507ebbaec03725d662768108c7ce17d Merge: 5a694b741 62d95de9c Author: Alan Garny '' Date: Fri Jan 29 16:47:52 2016 +0100 Merge pull request '#873' from opencor/issue866 Single Cell view: fixed an issue with random plot glitches in the 2016-01-25 snapshot '(closes' '#866).' commit 62d95de9c6303d49b5640f00a9f2e08ce75dfa6b Author: Alan Garny '' Date: Fri Jan 29 16:18:36 2016 +0100 Single Cell view: fixed an issue with random plot glitches in the 2016-01-25 snapshot '(#866).' commit 5a694b741f8b214263b2a0a4643c121694d502ed Author: Alan Garny '' Date: Fri Jan 29 15:12:25 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit d67fb9bd73c2a8d48b902272793ee9de280c9f42 Merge: 0a6ce28a8 59f3ce318 Author: Alan Garny '' Date: Fri Jan 29 13:56:39 2016 +0100 Merge pull request '#872' from opencor/issue868 Single Cell view: fixed an issue with a graph panel rescaling itself when plotting a graph using F9, but not when using the ''\''arrow'\''' button '(closes' '#868).' commit 0a6ce28a83540d6e1ce16eefc8d4b2ca84ab65f7 Author: Alan Garny '' Date: Fri Jan 29 13:35:43 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit 59f3ce318fe9eb8f5ee9f3d24c79186e56e31c1f Author: Alan Garny '' Date: Fri Jan 29 13:29:12 2016 +0100 Single Cell view: fixed an issue with a graph panel rescaling itself when plotting a graph using F9, but not when using the ''\''arrow'\''' button '(#868).' commit 3bdb2926ece91dea8f6ec15825c8d5cc402f1dbe Author: Alan Garny '' Date: Fri Jan 29 10:36:48 2016 +0100 Slight updates to the downloads page '[ci' 'skip].' commit 723ad56ab77a59cc8fef546bbc22224b7952a10b Author: Alan Garny '' Date: Fri Jan 29 10:30:44 2016 +0100 Some minor cleaning up of the downloads pages '[ci' 'skip].' commit 82738b38eb82e1cac59d1a1dd8c7bf932cf3b5d0 Author: Alan Garny '' Date: Thu Jan 28 21:25:42 2016 +0100 Re-enabled BioSignalML support. commit 47a11443ca06a37748678766b1280771c8a9767b Merge: 852e00dda bbf774b27 Author: Alan Garny '' Date: Thu Jan 28 20:11:29 2016 +0100 Merge branch ''\''master'\''' into issue825. commit bbf774b276d3256421d220cfb05cfb42af78a31d Merge: 2cda1c7a1 527ae5077 Author: Alan Garny '' Date: Thu Jan 28 20:09:34 2016 +0100 Merge pull request '#871' from opencor/issue869 Viewer: parentheses are sometimes missing or unneeded '(closes' '#869).' commit 527ae5077eb0774ab0bd5bbb79fbb3786b7c4245 Author: Alan Garny '' Date: Thu Jan 28 19:41:01 2016 +0100 Temporarily disable BioSignalML support. commit 30bb63afef2a941116ff77956b7dad70a8d3c64a Author: Alan Garny '' Date: Thu Jan 28 19:30:09 2016 +0100 Temporarily disable BioSignalML support. commit 5240ea9ccec311b8354d4d5d03fe2e2cd6757e07 Author: Alan Garny '' Date: Thu Jan 28 19:15:07 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869).' commit 423eb85e4938e0c9a32b809645d8f2cb1d84c4d0 Author: Alan Garny '' Date: Thu Jan 28 19:12:01 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 82982fa2a0c38a93d8e2ff2153a8fae572bba3fa Author: Alan Garny '' Date: Thu Jan 28 19:08:47 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit d26bdba844df1bbd514469b26345721f94cca010 Author: Alan Garny '' Date: Thu Jan 28 19:04:58 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 7bbb6fea2fb2229e5907689931630298a2f433ee Author: Alan Garny '' Date: Thu Jan 28 18:57:54 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 1755f12c78f04d5095e747d8032a455308e77984 Author: Alan Garny '' Date: Thu Jan 28 18:53:12 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit efac3dce0c4490ccd082156c8506dc58664eb746 Author: Alan Garny '' Date: Thu Jan 28 18:48:23 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit a93508d4390e6e14f1abbac4337408ad6fc1f81b Author: Alan Garny '' Date: Thu Jan 28 18:42:34 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit dfcfcc1ae7e2b99dd60a0a89a253555475a9e756 Author: Alan Garny '' Date: Thu Jan 28 17:55:35 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 13ad4d22601cc7988324058bd7b6099725c43b2c Author: Alan Garny '' Date: Thu Jan 28 17:33:27 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 1afbfb34464083bc932ac5d6ece929049b577553 Author: Alan Garny '' Date: Thu Jan 28 17:33:13 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 13ac0a12ad175a5cd19747dc79c6dbcb4339ea97 Author: Alan Garny '' Date: Thu Jan 28 16:58:16 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 94aae3bf3cf83fc0a578e14a92e521e4e15c8c57 Author: Alan Garny '' Date: Thu Jan 28 16:35:42 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit ae2cbe1d64be6cf57bb49eb53729f69f1f9e63ba Author: Alan Garny '' Date: Thu Jan 28 15:13:04 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit d7ac0f364ae6ece5a19a6d8f2ec3539d523e041b Author: Alan Garny '' Date: Thu Jan 28 15:10:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 98aa6886a83d247cc7fac10cb2b2c6346d324c1a Author: Alan Garny '' Date: Thu Jan 28 14:39:16 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 9251a77771a0de8aedf89cd47b0bebbe896aa926 Author: Alan Garny '' Date: Thu Jan 28 14:29:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 09708a6d4ddd59ab4bae3dddba15ab3f39812bbd Author: Alan Garny '' Date: Thu Jan 28 11:26:59 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit a5706f03f49673a81809cf86ebb86949a66a7c72 Author: Alan Garny '' Date: Thu Jan 28 11:06:08 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 39f14d3dc5eceb0ad1681559025dcaa759f72b16 Author: Alan Garny '' Date: Thu Jan 28 10:15:53 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 8dad028044bc07f470439a9bc924abe699a3f408 Author: Alan Garny '' Date: Wed Jan 27 18:39:40 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit e6e6857143ea4b2446e2efc09a5f7b289f40aa59 Author: Alan Garny '' Date: Wed Jan 27 18:07:49 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 38371083d495b8c8d3b1aa8ec87a22f218ec2cce Author: Alan Garny '' Date: Wed Jan 27 17:28:45 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 6efc8f0977c481677b666e230171b760dda830df Author: Alan Garny '' Date: Wed Jan 27 17:25:44 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 7fde83a3aeb40ad3eda911a2d46784a244c9fb5a Author: Alan Garny '' Date: Wed Jan 27 17:21:41 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit f20ddcbada3ae4d01a08ed0b99d412ccfd165668 Author: Alan Garny '' Date: Wed Jan 27 16:57:48 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit f512fa545327b21855fe6bacef2e6d410246227f Author: Alan Garny '' Date: Wed Jan 27 16:51:06 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 6a6faeab328c8f03c419a3681a298b5738e1e0f9 Author: Alan Garny '' Date: Wed Jan 27 16:21:18 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 492a7f1c882556905c709772d0543f7075aa71aa Author: Alan Garny '' Date: Wed Jan 27 15:18:00 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 3813fd8660b735395d627b268a27d44863a7a161 Author: Alan Garny '' Date: Wed Jan 27 15:08:25 2016 +0100 Viewer: some work towards fixing some issues with parentheses being either missing or unneeded '(#869)' '[ci' 'skip].' commit 2cda1c7a18397a934feb5d4ae892c1276a2fa2e4 Author: Alan Garny '' Date: Wed Jan 27 11:25:01 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 852e00dda95a8cb24b3364829f829e6da81a1a7c Author: Alan Garny '' Date: Tue Jan 26 18:58:33 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 80be4dd8bd407936ad077a6937339bdd8c030d96 Author: Alan Garny '' Date: Tue Jan 26 15:05:09 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit bf9aabb14d2f1169e605f8ef336741b6a06e1242 Merge: dbb0929f7 be0e6237b Author: Alan Garny '' Date: Tue Jan 26 15:02:28 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit be0e6237b3d31dd74d1de00332f87974a6b99ae1 Author: Alan Garny '' Date: Tue Jan 26 14:57:30 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 5b8681fcd893ad438b45f1b8f72d0aae6aa3f1bb Author: Alan Garny '' Date: Tue Jan 26 14:52:46 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit b7856ba844eab47783781e3190d1b101632fb23d Author: Alan Garny '' Date: Tue Jan 26 14:51:45 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit dbb0929f772939e03371d713f30723894c8fa0dd Author: Alan Garny '' Date: Tue Jan 26 14:49:38 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 2c0369a60656f41a265ead205e16f480125bca2f Author: Alan Garny '' Date: Tue Jan 26 14:36:00 2016 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 144817ba6c2b7a1e1d05f5882069deefd8df0322 Merge: 547a3e7b3 4d54dbf80 Author: Alan Garny '' Date: Tue Jan 26 14:33:00 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 4d54dbf8055e90f0407a0236de5483aecf027844 Author: Alan Garny '' Date: Mon Jan 25 17:21:43 2016 +0100 Slight updates to the user documentation and downloads page '[ci' 'skip].' commit 60ac1b173fc76232ecefdfd304814f60682c4a55 Author: Alan Garny '' Date: Mon Jan 25 17:00:47 2016 +0100 New snapshots. commit 62ddf2b60330afa1ea97ab8109cda4157f88d538 Author: Alan Garny '' Date: Mon Jan 25 16:46:49 2016 +0100 New snapshots. commit 2cc082cc377fc29b8d4aac4422fcd59f85dd2b71 Merge: aafa29456 3adf9a15e Author: Alan Garny '' Date: Mon Jan 25 16:14:59 2016 +0100 Merge pull request '#865' from opencor/issue863 Viewer: fixed an issue with some wrong rendering '(closes' '#863).' commit 3adf9a15e39a839a470ec9f7ce10aa79697cc7c8 Author: Alan Garny '' Date: Mon Jan 25 16:02:05 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit 4ab9dd742a2090ee439dd01bd4254cafe57fc8e2 Author: Alan Garny '' Date: Mon Jan 25 15:59:30 2016 +0100 Viewer: fixed an issue with some wrong rendering '(#863).' commit 7d016cd08124e489c452a48b8934d1f72e70f5b1 Author: Alan Garny '' Date: Mon Jan 25 14:50:06 2016 +0100 Viewer: some work on fixing an issue with some wrong rendering '(#863)' '[ci' 'skip].' commit cdfa197b2824232f74151ac25a8c6ee6762e909e Author: Alan Garny '' Date: Mon Jan 25 11:45:47 2016 +0100 Slight improvement to our MathML tests '(#863)' '[ci' 'skip].' commit 0c4e88300165bbd59b5ba83ac49bf0c8040f7035 Author: Alan Garny '' Date: Sat Jan 23 16:07:56 2016 +0100 Viewer: some work on fixing an issue with some wrong rendering '(#863)' '[ci' 'skip].' commit aafa29456759ade55f61fe29028433da017b90e4 Author: Alan Garny '' Date: Sat Jan 23 14:21:40 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit bc968ec1b35446485b0777abb839cabe1a2aa307 Author: Alan Garny '' Date: Fri Jan 22 17:01:27 2016 +0100 Slight update to the README.txt file for our MathML tests '(#862)' '[ci' 'skip].' commit b0cdaffdfc4709799dd2ec02748785746865df80 Author: Alan Garny '' Date: Fri Jan 22 16:55:58 2016 +0100 Viewer: fixed a regression issue '(closes' '#862).' commit 10860fcff79047c520d3dd37f678d99f1dd3de8f Author: Alan Garny '' Date: Fri Jan 22 16:19:22 2016 +0100 Slight updates to the 'user'\''s' documentation '[ci' 'skip].' commit 0c91098d1251b0f4968eb2fb536c9e2a40da3042 Author: Alan Garny '' Date: Fri Jan 22 14:49:16 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit fe43ab4facc5b7cf1032ccbba3c24b02123697db Author: Alan Garny '' Date: Fri Jan 22 14:43:34 2016 +0100 Some minor updates to the user and downloads documentation '[ci' 'skip].' commit 4b5ad6e046159826c54b56b18866a4861e0d10cd Merge: 8f4fe8ceb c0330fb6c Author: Alan Garny '' Date: Fri Jan 22 14:34:57 2016 +0100 Merge pull request '#864' from opencor/issue590 Single Cell view: made the view more file specific '(closes' '#590).' commit 547a3e7b331e8c3b118ce10668e0e1d0023abb7c Merge: 98c5b2821 8f4fe8ceb Author: Alan Garny '' Date: Fri Jan 22 13:49:16 2016 +0100 Merge branch ''\''master'\''' into issue825. commit c0330fb6c96216dcf749517d720034e28c65a0c0 Merge: c4adbaa32 8f4fe8ceb Author: Alan Garny '' Date: Fri Jan 22 13:48:52 2016 +0100 Merge branch ''\''master'\''' into issue590. commit 8f4fe8ceb5e843d39f3f204eb6e6a40933b54173 Author: Alan Garny '' Date: Fri Jan 22 13:48:37 2016 +0100 Slight update to the developer documentation '[ci' 'skip].' commit c4adbaa32b746dc4d9c409bdb5d03ea499b3348d Author: Alan Garny '' Date: Fri Jan 22 13:41:12 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit becea6adaeeb1b8a865a052b9deb6dbdba833c67 Author: Alan Garny '' Date: Fri Jan 22 10:39:04 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 3e363fdfeb8de662f7872a08e3d054f8a59a32df Author: Alan Garny '' Date: Thu Jan 21 17:44:11 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 0c4e208293d10fed95030dd5601899c8e7046217 Author: Alan Garny '' Date: Thu Jan 21 15:18:06 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 5830b13a526904f3ebd3e3be88e86d8514bd1701 Author: Alan Garny '' Date: Thu Jan 21 15:09:40 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit a805c61c7154ab0ff60d4bb2be65627256d014ef Author: Alan Garny '' Date: Thu Jan 21 14:50:05 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d939a2030c0e26bb8ae77ea787aa54b06cf602d3 Author: Alan Garny '' Date: Wed Jan 20 16:02:24 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 047d4405b2adcba866e2e891b1c5a34d90d2d1af Author: Alan Garny '' Date: Wed Jan 20 15:49:17 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 9d25b76b0aed322606808ed092366caf47d6f59a Author: Alan Garny '' Date: Wed Jan 20 15:33:26 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit c2d69db81c5973d5c97712303f321fe4e205f543 Author: Alan Garny '' Date: Wed Jan 20 15:25:30 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 8d4348f0ded0a8cd5c1de66a1c9b5f0ac387e9a0 Author: Alan Garny '' Date: Wed Jan 20 15:06:45 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 82a6a1632f14b8d54ee723ad272f2094832c9343 Author: Alan Garny '' Date: Wed Jan 20 14:11:27 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 2dd88806b573c105eaf86f35500dc7b9edc5033a Author: Alan Garny '' Date: Tue Jan 19 17:49:12 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 9997d348fe521dc345484fb495ae0d7894aca5b6 Author: Alan Garny '' Date: Tue Jan 19 16:57:49 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ad0259cb4d617936b8cfa3f8500e7149bbe1bee3 Author: Alan Garny '' Date: Tue Jan 19 16:41:15 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit de17905ecee750bccf7d6acdfd2dfd2f2cdb08d8 Author: Alan Garny '' Date: Tue Jan 19 15:29:50 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 183d5cbe9c9543aff9d979e0507ab7d2db4cdbe4 Author: Alan Garny '' Date: Tue Jan 19 13:11:25 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 7ff8bd289b861604c888da7d247b0fcb42d4b206 Author: Alan Garny '' Date: Mon Jan 18 15:17:42 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit a5ebea2ffc822cc6027def2252b24c385474ff0a Author: Alan Garny '' Date: Mon Jan 18 15:08:37 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 9f77ee3c441abedc6f4e36bbbe5d403946fda70e Author: Alan Garny '' Date: Mon Jan 18 11:40:59 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 347d71b0aeaf25adb98d661c3fd93dc85772d79b Author: Alan Garny '' Date: Fri Jan 15 13:03:54 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 30363c19b4b34b3263caf786cf3b2445f660d5c1 Author: Alan Garny '' Date: Fri Jan 15 11:38:00 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit dec560a961b63d66270c9b1c9384ae30ea68be97 Author: Alan Garny '' Date: Fri Jan 15 09:26:08 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit f78cdd14165d44a6dc67cbb1f165bc1a2632be81 Author: Alan Garny '' Date: Fri Jan 15 09:18:11 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit c4d6ac179d1c48b99e96aea28d27372282cf4219 Author: Alan Garny '' Date: Thu Jan 14 19:21:41 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2dabfb07c16bcc3061a0c4f471ee60fc5eecf455 Author: Alan Garny '' Date: Thu Jan 14 19:15:57 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 8f66208df3b5fc4ed63d6761c6ca5ee3c743ac41 Author: Alan Garny '' Date: Thu Jan 14 18:23:30 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit bcd9c5e0806bd7a96b0d6eb7a46b909c1d8d72c6 Author: Alan Garny '' Date: Thu Jan 14 18:21:34 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 32c18412b56ebe1c188cc20ca8a2b08e27d719a4 Author: Alan Garny '' Date: Thu Jan 14 17:27:50 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 4e493dafd47b7b157826faee5a22879c8da6c8d1 Author: Alan Garny '' Date: Thu Jan 14 17:01:27 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 87882c3be140e6c9a41e8809a338bfe0f0fa05da Author: Alan Garny '' Date: Thu Jan 14 16:38:38 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit dcecfae293817acbd8c96b39f1ccf31f5955d096 Author: Alan Garny '' Date: Thu Jan 14 15:30:15 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 8f65a53196e3005954b58f60d339e0fe3854c1a2 Author: Alan Garny '' Date: Thu Jan 14 15:23:47 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 366cab0e7bcb5434082238871108bc41430dc5bc Author: Alan Garny '' Date: Thu Jan 14 14:49:26 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 79e0af2f79438270781e94ca576a6ae27211358d Author: Alan Garny '' Date: Thu Jan 14 13:05:54 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 42e9add86d8a3f93a25e7b8140a1c08ae05f44e0 Author: Alan Garny '' Date: Thu Jan 14 11:51:03 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 490e1605cfc1bb5aae28ff106aa1edbda9c643c2 Author: Alan Garny '' Date: Thu Jan 14 10:09:35 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit a4ec0bb1aa7de92b604ccc48ea5f12fa00d7a386 Author: Alan Garny '' Date: Wed Jan 13 18:10:51 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 9e8cf7ea83205a025a93837dbc56864ff7b63fd9 Author: Alan Garny '' Date: Wed Jan 13 18:08:24 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 98c5b28211bb0a1b2ed04b31a9fa594bffad5fc4 Merge: ed4d940a9 b2f5d3b00 Author: Alan Garny '' Date: Wed Jan 13 15:40:20 2016 +0100 Merge branch ''\''master'\''' into issue825. commit 93287e275f705f7ead7c9ef98a60d7210c704829 Merge: ddd5aefb9 b2f5d3b00 Author: Alan Garny '' Date: Wed Jan 13 15:39:56 2016 +0100 Merge branch ''\''master'\''' into issue590. commit ddd5aefb9d332433d12c400e2758751e556cd69e Author: Alan Garny '' Date: Wed Jan 13 14:48:51 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 49fa14e26fb143aabc8e95361f67c027df5bd6d3 Author: Alan Garny '' Date: Wed Jan 13 11:44:24 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d454a0d85f2adbe0f96c3fb9be48a3dc43b4f14d Author: Alan Garny '' Date: Tue Jan 12 17:20:19 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 988badeb1218573472a0e9cb9ade37cf27faa65b Author: Alan Garny '' Date: Tue Jan 12 16:53:09 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 914a72e268b6d48314a8088df658434785593803 Author: Alan Garny '' Date: Tue Jan 12 16:01:26 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 4f5cc1597de222bd1b966d7226c695bf9c8b13d5 Author: Alan Garny '' Date: Tue Jan 12 15:34:03 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d8c8553d6362fe99d95d57648e5380114aee3f18 Author: Alan Garny '' Date: Tue Jan 12 15:18:57 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit f942fe87f4947fbb817dda8cde829cfa260c7c14 Author: Alan Garny '' Date: Tue Jan 12 15:03:00 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit b5d07fa5d527a3f83c4163be405621365947b13f Author: Alan Garny '' Date: Tue Jan 12 14:00:46 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit bbdbb21256200c060ec439af5ab0324ff4eeec89 Author: Alan Garny '' Date: Tue Jan 12 13:30:16 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 2ccd89e765199fdbc9df49a4fd1301b1d22c77ad Author: Alan Garny '' Date: Tue Jan 12 11:53:28 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit f7697aa3bb8cb603effaf4a3b2ff0e442310a15a Author: Alan Garny '' Date: Tue Jan 12 11:14:35 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit cb38881f79b39e15db282f14ece09769bff9055a Author: Alan Garny '' Date: Tue Jan 12 11:05:47 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 27ec0113a70b263191b6330ac2b8c41f32e7675f Author: Alan Garny '' Date: Tue Jan 12 10:30:53 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 44f45711c8dbd24315b134b734cfcce38ae08271 Author: Alan Garny '' Date: Tue Jan 12 09:43:23 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 801dbd49cfe005b8ab36b3e47a2feca172a3db69 Merge: 88598a869 b2f5d3b00 Author: David Brooks '' Date: Tue Jan 12 15:19:54 2016 +1300 Merge branch ''\''master'\''' into renamebsml commit cce02594d3fe44ad375b78499567293eb4b1cd86 Author: Alan Garny '' Date: Mon Jan 11 18:51:48 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit e54085eaeacbd7f7045d8b4eb4c915403709a107 Author: Alan Garny '' Date: Mon Jan 11 13:33:33 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 4eaa3587129330a47b14c5b9367c70a701c83d78 Author: Alan Garny '' Date: Mon Jan 11 13:17:28 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 6feac292ba176d4b45b1a4d4093566c4a10429b6 Author: Alan Garny '' Date: Mon Jan 11 11:31:40 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit dc7d3cb5bb9d07cae8f54f12c3c75f5eaf64ec29 Author: Alan Garny '' Date: Mon Jan 11 11:06:37 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit b2f5d3b0023dda2659b26ebdb44b6b1d96c6bb79 Author: Alan Garny '' Date: Sun Jan 10 11:43:47 2016 +0100 Slight updates to the developer documentation '[ci' 'skip].' commit 82976d4c376f1215ed6ccc3601ee20539449ef27 Merge: c69ac3fe3 118e90af2 Author: Alan Garny '' Date: Sun Jan 10 11:38:48 2016 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit c69ac3fe3f82505e5a62e78cece77e411db5fe7c Author: Alan Garny '' Date: Sun Jan 10 11:37:48 2016 +0100 jQuery: upgrade to version 2.2.0 '(closes' '#861).' commit d5c7d4e62ffe91ae9e5379776cb6ef99ba203247 Author: Alan Garny '' Date: Fri Jan 8 18:18:44 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 45620c20e3695730e9d25782cb90e84f52c7a5ea Author: Alan Garny '' Date: Fri Jan 8 16:19:57 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 1a8c7b7a83d7e1cbe1bd6d6f922e3ae0c6080a36 Author: Alan Garny '' Date: Fri Jan 8 16:17:36 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit bc6262610083456678f4e1acb98f635680aa7dcb Author: Alan Garny '' Date: Fri Jan 8 15:59:35 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 4f9af29d37832d02c1fb43c22e6e4ae0cb119099 Author: Alan Garny '' Date: Fri Jan 8 15:56:18 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit bd4aa5f7594f223b8254698449a506744506513c Author: Alan Garny '' Date: Fri Jan 8 15:39:03 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 5f4e364fe210ca67e85a34cf1253915a11b056b8 Author: Alan Garny '' Date: Fri Jan 8 15:21:48 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 764f3822c94fe7c62a5f01231adf0af72465cd8a Author: Alan Garny '' Date: Fri Jan 8 15:20:00 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 7762d0b86c0d87ec4cf668cfcb26930fc87198f7 Author: Alan Garny '' Date: Fri Jan 8 14:49:12 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d371fa3d6c5bf253d072db780b9f5fde61b844f6 Author: Alan Garny '' Date: Fri Jan 8 14:38:36 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 118e90af2d147111b9b479c2b99b811971a47848 Author: Alan Garny '' Date: Fri Jan 8 12:57:47 2016 +0100 Slight update to the downloads page '[ci' 'skip].' commit 3ef0adc56720b82a1f3487c64b4d7caf12a9734e Author: Alan Garny '' Date: Fri Jan 8 10:46:09 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit a841d7daefaedb93383d244e19807615adff35ed Author: Alan Garny '' Date: Fri Jan 8 10:07:36 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 454619165b0fafd0fd98203c92136a785be5dbf5 Author: Alan Garny '' Date: Fri Jan 8 09:50:10 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 7eaf4a4b8df7d5bd25cef4cbbfa74d1997cb9abc Author: Alan Garny '' Date: Thu Jan 7 18:31:28 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 77896681ba96cb3efb1ec92af72a734cc58c45dc Author: Alan Garny '' Date: Thu Jan 7 17:34:02 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit cf5eead5d6a3f9ba91baa5e2d6cc7eafdbe0c462 Author: Alan Garny '' Date: Thu Jan 7 17:05:16 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 449857113a1dbeff71ba8451685c3536cfb3ff5a Author: Alan Garny '' Date: Thu Jan 7 15:55:17 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit 2681830d41f503ebda0d676db26bed0d1601dad3 Author: Alan Garny '' Date: Thu Jan 7 15:44:29 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit f187b2e42f83e0f079be95c80459604d726bb52b Author: Alan Garny '' Date: Thu Jan 7 15:37:18 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 2860115c46b0da39ce1fa3518f30abda2f48eaa0 Author: Alan Garny '' Date: Thu Jan 7 15:31:28 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 04013df139564ca1b5f7dbb9e58bb0f87f2ace21 Author: Alan Garny '' Date: Thu Jan 7 15:10:59 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 27f175232a5431522650ab1b0f5dd0c98f672dbe Author: Alan Garny '' Date: Thu Jan 7 15:06:37 2016 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit ed4d940a906c07cc74bc0961e0f13e70490e38fc Merge: 555d0f96d 5bc50d0ac Author: Alan Garny '' Date: Thu Jan 7 13:43:35 2016 +0100 Merge branch ''\''master'\''' into issue825. commit fb5926459476dae793a181cc56bac563fc10e0ae Merge: 3528359e0 5bc50d0ac Author: Alan Garny '' Date: Thu Jan 7 13:43:16 2016 +0100 Merge branch ''\''master'\''' into issue590. commit 5bc50d0ac20815836ea4d21ad8396f565d6f83fe Author: Alan Garny '' Date: Thu Jan 7 12:54:59 2016 +0100 Some minor cleaning up '[ci' 'skip].' commit ef8898192d4419ced7f2cd8ab5dcbe793e8310e3 Merge: 90f3dce69 34448ef09 Author: Alan Garny '' Date: Thu Jan 7 12:48:54 2016 +0100 Merge pull request '#860' from opencor/issue859 LLVM: upgraded to version 3.7.1 '(closes' '#859).' commit 34448ef09361f763d7d0c11cda9afcdde6828d1f Author: Alan Garny '' Date: Thu Jan 7 11:54:36 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859).' commit 165c527be780c2ea1c22379d9c218b3cba8ef19e Author: Alan Garny '' Date: Thu Jan 7 10:34:17 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit be14b4814f3a52f1db0c2b2f7bdf2680e94c6abd Author: Alan Garny '' Date: Thu Jan 7 09:58:54 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit 8a66a068229cd41ce5d957681e69761d607772fe Author: Alan Garny '' Date: Thu Jan 7 09:01:01 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit a5ab2b67c2a46daad0c56ee25c1b229a63aa3274 Author: Alan Garny '' Date: Wed Jan 6 19:59:38 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit f07f45ff2d86fecabe67f217bf6c8a0a73262312 Author: Alan Garny '' Date: Wed Jan 6 18:15:37 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit 0913651fb9166ec274748e5d922c6572c80f7745 Author: Alan Garny '' Date: Wed Jan 6 16:42:08 2016 +0100 LLVM: some work towards upgrading to version 3.7.1 '(#859)' '[ci' 'skip].' commit 88598a869865770739dbd26a50751e53e46654e4 Author: David Brooks '' Date: Tue Dec 22 10:42:25 2015 +1300 Use the full name '"BioSignalML"' instead of abbreviated versions for file names etc in plugin. commit 555d0f96d2b75f24a553f6e2fee2a6dece3058fd Merge: 2e18be2a0 90f3dce69 Author: Alan Garny '' Date: Mon Dec 21 14:29:54 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 3528359e01644c90edb40a6388cdf574b3317b1e Merge: 7b770af91 90f3dce69 Author: Alan Garny '' Date: Mon Dec 21 14:29:27 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 90f3dce6996a3d6002ff81bd35dd633aa65d32b0 Merge: 0237cfc83 8be0ed453 Author: Alan Garny '' Date: Mon Dec 21 14:22:34 2015 +0100 Merge pull request '#858' from opencor/LLVM LLVM: some minor cleaning up. commit 8be0ed45322c1751d73d19da58719926a7302635 Author: Alan Garny '' Date: Mon Dec 21 13:53:38 2015 +0100 Some minor cleaning up. commit 31b1a0ab9b19722726b5f80a247c11d30f44a932 Author: Alan Garny '' Date: Mon Dec 21 11:19:07 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 2e18be2a0c38b5c7cf8b0760380b5e3c84e0227d Merge: 16b3a6f4b 0237cfc83 Author: Alan Garny '' Date: Mon Dec 21 02:12:38 2015 +0100 Merge branch ''\''master'\''' into issue825 '[ci' 'skip].' commit 7b770af9183460f4c69734a89197c7733717aa74 Merge: 60cb12b81 0237cfc83 Author: Alan Garny '' Date: Mon Dec 21 02:12:04 2015 +0100 Merge branch ''\''master'\''' into issue590 '[ci' 'skip].' commit 0237cfc83b891add4aab59deb3e9eece035c8c95 Author: Alan Garny '' Date: Mon Dec 21 02:10:30 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 60cb12b816084b917e53cf5144a8ee48ba8dacad Merge: 05c1c44e5 a2aac4f0f Author: Alan Garny '' Date: Mon Dec 21 01:39:36 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 16b3a6f4b81dbbc1c3a357113eb5d80f59021c1d Merge: 61cd55642 a2aac4f0f Author: Alan Garny '' Date: Mon Dec 21 01:39:10 2015 +0100 Merge branch ''\''master'\''' into issue825. commit a2aac4f0fbcff983250eeb074845790afee29e7d Merge: 856577561 a8e4dcd7c Author: Alan Garny '' Date: Mon Dec 21 01:38:02 2015 +0100 Merge pull request '#857' from opencor/LLVM Disabled the output of warnings/errors from LLVM. commit a8e4dcd7cec0824b38045fcb8261ffc40e126afd Author: Alan Garny '' Date: Mon Dec 21 01:13:30 2015 +0100 Disable the output of warnings/errors from LLVM. commit b19f370426b47ea6639bf74e040ffddd0cd15e38 Author: Alan Garny '' Date: Mon Dec 21 00:02:02 2015 +0100 Disable the output of warnings/errors from LLVM '[ci' 'skip].' commit e1ac3bc5499056869316fc43be947cd2cd904bfc Author: Alan Garny '' Date: Sun Dec 20 23:10:40 2015 +0100 Disable the output of warnings/errors from LLVM '[ci' 'skip].' commit 1d538504984551135af4aed27b36d933147526d1 Author: Alan Garny '' Date: Sun Dec 20 22:08:14 2015 +0100 Disable the output of warnings/errors from LLVM '[ci' 'skip].' commit eaee83df46fc7d99cea950194a885205fdd7abbc Author: Alan Garny '' Date: Sun Dec 20 19:45:27 2015 +0100 Disable the output of warnings/errors from LLVM '[ci' 'skip].' commit 8565775618aa3b5485fc3374750494af117aeefd Author: Alan Garny '' Date: Sun Dec 20 18:19:19 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 05c1c44e5846628d346ce9ce3b9fb8dd61a3e29f Author: Alan Garny '' Date: Fri Dec 18 18:40:24 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit bdee04498703c5bf4afdec5d12bed7d5aadf7d4d Author: Alan Garny '' Date: Fri Dec 18 18:38:07 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 8a91a1fe62e0f91aabb8ae390ee47a4d6c5d2abe Author: Alan Garny '' Date: Fri Dec 18 17:53:31 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 2999d843d072a51bdc1914fc4c16f4c81f330e96 Author: Alan Garny '' Date: Fri Dec 18 17:49:36 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 4553d7b65241bd771d0e2cf43200cfd4d8f14d9a Author: Alan Garny '' Date: Fri Dec 18 15:43:19 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit fb1374f1afd1e2095d9020a83d36e7dd5039ad23 Author: Alan Garny '' Date: Fri Dec 18 15:38:45 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit ff612dc5ec749fafa36d4dd7ccd97989a695fd32 Author: Alan Garny '' Date: Fri Dec 18 14:43:10 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 0ec6a30162638fef5fd4a9fbdda6740b5dc297a7 Author: Alan Garny '' Date: Fri Dec 18 14:32:45 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 4b230ea8602d5a4085221f3cb3c5e5582d4ae85f Merge: 8a3e84d8d 258ae4c83 Author: Alan Garny '' Date: Fri Dec 18 13:55:21 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 61cd55642d568b8a48f7f001057e5eb244447578 Merge: d5344a03f 258ae4c83 Author: Alan Garny '' Date: Fri Dec 18 13:55:04 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 258ae4c838e13cfc65e73704c0b948dcfd485de0 Author: Alan Garny '' Date: Fri Dec 18 13:53:17 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 3848d638530890d72402d3f2cf6eee73113b7f0d Author: Alan Garny '' Date: Thu Dec 17 20:05:47 2015 +0100 Tests: oops, some refactoring gone wrong for Windows... commit d5344a03fbf4b0614911fa3d29ad9b26b044e2f3 Merge: b8efab572 a6f28e0ac Author: Alan Garny '' Date: Thu Dec 17 19:33:34 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 8a3e84d8d185798c39ff95303892c01f067f14dc Merge: d6aa9b082 a6f28e0ac Author: Alan Garny '' Date: Thu Dec 17 19:33:08 2015 +0100 Merge branch ''\''master'\''' into issue590. commit a6f28e0acb00601fa5d2393187febfceb51669ed Author: Alan Garny '' Date: Thu Dec 17 19:23:16 2015 +0100 Travis CI: checking whether we can now retrieve the BioSignalML binaries. commit b8efab572edee28c671630ca1352865ae0ba7b14 Author: Alan Garny '' Date: Thu Dec 17 19:16:34 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825).' commit 3f14d8f3ce31cfcda58873fa821cf686557a17cd Merge: ee5a021b0 a1fdb8efe Author: Alan Garny '' Date: Thu Dec 17 17:16:50 2015 +0100 Merge branch ''\''master'\''' into issue825 '[ci' 'skip].' commit d6aa9b0821646b8fdfe3e1362219c81433bb2670 Merge: 53e5d9254 a1fdb8efe Author: Alan Garny '' Date: Thu Dec 17 17:14:19 2015 +0100 Merge branch ''\''master'\''' into issue590. commit a1fdb8efe64fee94a7b706a550fc0b52118c47b9 Author: Alan Garny '' Date: Thu Dec 17 17:14:01 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 973c1acf8f52a3ea4e43c428a1e72420da807743 Author: Alan Garny '' Date: Thu Dec 17 16:41:41 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit ee5a021b0437334a9e29807449b32bb894e637cb Merge: b0b7e964a 1ea65fdf0 Author: Alan Garny '' Date: Thu Dec 17 16:22:26 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 53e5d9254cb745f0ecf4e9c7d1e6835c51d02f44 Merge: dedbd490f 1ea65fdf0 Author: Alan Garny '' Date: Thu Dec 17 16:15:51 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 1ea65fdf04a071333d753f06f518cc998114cd43 Author: Alan Garny '' Date: Thu Dec 17 16:14:58 2015 +0100 Slight fix to the developer documentation '[ci' 'skip].' commit dece7d0de94dd2df0b8549494ddd9e75fcbe99e0 Merge: 24ab493dd 7c0267962 Author: Alan Garny '' Date: Thu Dec 17 16:12:15 2015 +0100 Merge pull request '#855' from opencor/issue850 'Don'\''t' make the building/packaging of OpenCOR depend on the ''\''build'\''' directory anymore '(closes' '#850).' commit 7c0267962e27c3113d9eb2a4ebc537a7498ba6d1 Author: Alan Garny '' Date: Thu Dec 17 15:41:40 2015 +0100 Re-disabling BioSignalML '(the' server is down or 'something!).' commit a51b47ce2e96e9718f9b562acdefd8a5991acf0a Author: Alan Garny '' Date: Thu Dec 17 15:00:28 2015 +0100 Slight improvements to our CellML 'tools'\''' tests. commit 57e6aa671206c5c2bdfe4505446467584abc9015 Author: Alan Garny '' Date: Thu Dec 17 14:27:47 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 9199ae85c77aed00a1f3be957f94ff871b5bf59c Author: Alan Garny '' Date: Thu Dec 17 14:25:17 2015 +0100 Re-enabled BioSignalML support since the binaries can now be retrieved on Windows '[ci' 'skip].' commit f353190051c5958eed856be55711459111f1813e Author: Alan Garny '' Date: Thu Dec 17 14:21:01 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 694ec5e6d433bffde57a27217bea53a56d781a4b Author: Alan Garny '' Date: Thu Dec 17 11:07:28 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 99f2bb986da2a4efa1fc43749596be2cf5ba96ed Author: Alan Garny '' Date: Thu Dec 17 11:04:05 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit dc03c37b28046d1b4d1f57da96052dea419f1675 Author: Alan Garny '' Date: Thu Dec 17 10:55:11 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 1dd514bb3d30669a5ddcd291e04695af9553227b Author: Alan Garny '' Date: Thu Dec 17 10:54:14 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 32e5454714dd54478c063bee4a5ce61e56594eb8 Author: Alan Garny '' Date: Thu Dec 17 10:28:03 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ca54247a6ebddbda276efbf9590bd3225abc237a Author: Alan Garny '' Date: Thu Dec 17 10:25:05 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6990597bcc8440814bbb890b76582d9e27b5f053 Author: Alan Garny '' Date: Thu Dec 17 10:20:02 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 60992db1efa01628b25fb7a65df65a82fe08c0e6 Merge: 741e67c6d 24ab493dd Author: Alan Garny '' Date: Thu Dec 17 09:26:25 2015 +0100 Merge branch ''\''master'\''' into issue850. commit 24ab493dd2302cf753153eeeba085eefc16caf4f Merge: 4d6bb4831 8a4d349a3 Author: Alan Garny '' Date: Wed Dec 16 23:57:22 2015 +0100 Merge pull request '#854' from dbrnz/devel Drop '`_d`' postfix in 'Windows'\''' debug binaries. commit 8a4d349a3a5f9c9330babdbe2a7a69ea15a1e8d6 Author: David Brooks '' Date: Thu Dec 17 10:23:53 2015 +1300 Drop '`_d`' postfix in 'Windows'\''' debug binaries. commit 741e67c6d24a2e131a41990f97263fff70028018 Author: Alan Garny '' Date: Wed Dec 16 21:00:39 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 27fc28b9725b08946aa708ee3d2ce93cbd279ee5 Author: Alan Garny '' Date: Wed Dec 16 19:48:24 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 8d9ac273d9fe954f9c46ab21d1010fce22aecb45 Author: Alan Garny '' Date: Wed Dec 16 18:38:09 2015 +0100 Disable BioSignalML support for now '(since' the binaries 'can'\''t' currently be retrieved on 'Windows)' '[ci' 'skip].' commit afb74f6343e1a505ecb3285fd9193e5aa3ddfe5c Author: Alan Garny '' Date: Wed Dec 16 18:37:23 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 09d55638a013e9e0c62f8d7c1b48f9a84a48f333 Author: Alan Garny '' Date: Wed Dec 16 17:47:39 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 8b0da57ab13528c46c61e8c1449a984e33dafda2 Author: Alan Garny '' Date: Wed Dec 16 17:45:15 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 12aaa3d1e996d2f91b84e835299411599902ab9a Author: Alan Garny '' Date: Wed Dec 16 17:18:50 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 366039523849e0133c8266f6925adc9a2ac0330e Author: Alan Garny '' Date: Wed Dec 16 14:55:44 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 568fccdfca4b504d0c6ee3a85827b626185340ca Author: Alan Garny '' Date: Wed Dec 16 14:49:16 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit db1c7eb417aad54c2866261b6cbbc736c02c9dc3 Author: Alan Garny '' Date: Wed Dec 16 14:36:29 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 85ab9d2a69cdb8ab7981b06d576bed7290e93c52 Author: Alan Garny '' Date: Wed Dec 16 14:15:42 2015 +0100 Some work on not making the building/packaging of OpenCOR depend on the ''\''build'\''' directory '(#850)' '[ci' 'skip].' commit 4d6bb4831b43f4932207c1a20880bb109b5a9459 Author: Alan Garny '' Date: Wed Dec 16 14:11:12 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a895977f44115446b45f6565942ebacfec056fc2 Author: Alan Garny '' Date: Wed Dec 16 13:54:51 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0d8f8f2c16b8c8cd891f9301eae3a58f321af611 Merge: afac46ebb b0dbc64d1 Author: Alan Garny '' Date: Wed Dec 16 13:47:46 2015 +0100 Merge pull request '#853' from dbrnz/libbsml Some work towards adding BioSignalML export to OpenCOR '(#841).' commit dedbd490ff8ad30a09813e7de6f1ad57cf55be4c Author: Alan Garny '' Date: Wed Dec 16 11:02:00 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit b0dbc64d12b65319380ab6ab3b20a2e7bc94e43a Author: David Brooks '' Date: Wed Dec 16 22:28:02 2015 +1300 Update to use latest BioSignalAPI release, removing 32-bit versions. commit d1e6ec41121c10d08a0811f69f42261fc68a8223 Merge: 7bf4905fd afac46ebb Author: David Brooks '' Date: Wed Dec 16 15:31:03 2015 +1300 Merge branch ''\''master'\''' into libbsml commit b0b7e964a8c78a486f2e9a6827de70d0adbeb0ae Merge: d406ca51f afac46ebb Author: Alan Garny '' Date: Tue Dec 15 18:40:05 2015 +0100 Merge branch ''\''master'\''' into issue825. commit c94a5f025e45bb48515c261538331609f628564d Merge: 5c00cff3e afac46ebb Author: Alan Garny '' Date: Tue Dec 15 18:38:22 2015 +0100 Merge branch ''\''master'\''' into issue590. commit afac46ebb755ebe67d16c1619383a213ba661937 Author: Alan Garny '' Date: Tue Dec 15 18:34:36 2015 +0100 Slight comment update '[ci' 'skip].' commit f4baac51bf2f1dafc70da4c6d1e70f401a4f61df Author: Alan Garny '' Date: Tue Dec 15 18:34:22 2015 +0100 A slight improvement until we implement issue '#848' '[ci' 'skip].' commit a602ea08a416474f7a4c427b178d545ffd593a44 Merge: 2d6ba0d1d 56d7f9f7a Author: Alan Garny '' Date: Tue Dec 15 18:21:39 2015 +0100 Merge pull request '#847' from opencor/issue846 Calls to QFileDialog now handle the case where a user cancels their action '(closes' '#846).' commit 56d7f9f7ade51aac9a85ed2b33f75524091b4941 Author: Alan Garny '' Date: Tue Dec 15 17:41:49 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846).' commit b8be7ab70586c2cbb2b69498ce78cd703f11ca00 Author: Alan Garny '' Date: Tue Dec 15 17:40:17 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846).' commit 3a622082152fe1c76ea1200acec1cd24364ba88a Author: Alan Garny '' Date: Tue Dec 15 17:19:23 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846)' '[ci' 'skip].' commit 3b5e9799670e542ee2648886811fbc8dcded6ee8 Author: Alan Garny '' Date: Tue Dec 15 17:03:25 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846)' '[ci' 'skip].' commit 35ac97d29f19f06b16c548e996ddd9f2befb0fe7 Merge: 3edd42644 2d6ba0d1d Author: Alan Garny '' Date: Tue Dec 15 16:41:10 2015 +0100 Merge branch ''\''master'\''' into issue846. commit 2d6ba0d1d8f040e2d7c0c4b2aa81ed63e1071dec Author: Alan Garny '' Date: Tue Dec 15 16:40:44 2015 +0100 Slight updates to the download page '[ci' 'skip].' commit 3edd42644a4beb8cc5cfb052764007cac24f2b15 Author: Alan Garny '' Date: Tue Dec 15 16:17:46 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846)' '[ci' 'skip].' commit 3877c861d0e5e71491cd8cc0ee50b7ec4a09fd1b Author: Alan Garny '' Date: Tue Dec 15 15:58:14 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit d8f1dff7cfc20311bd03f1b921222cbaeffe0525 Author: Alan Garny '' Date: Tue Dec 15 15:57:51 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846)' '[ci' 'skip].' commit e8ac85fb75cd4a2afa5be35bb75cd2db3902cad9 Author: Alan Garny '' Date: Tue Dec 15 15:26:58 2015 +0100 Some work on ensuring that calls to QFileDialog now handle the case where a user cancels their action '(#846)' '[ci' 'skip].' commit c8cf80b085b31d40bf518bde4c926063afaa7d55 Author: Alan Garny '' Date: Tue Dec 15 14:34:45 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0238110ca5f53d81de2177c00a602ead0c5cafec Author: Alan Garny '' Date: Tue Dec 15 11:28:29 2015 +0100 Some work on using a 'user'\''s' proxy settings '(#845)' '[ci' 'skip].' commit 468a267b0a223653a3d6271a095c5a585dd886a2 Author: Alan Garny '' Date: Tue Dec 15 11:11:42 2015 +0100 Slight improvement to our 'Core::formatMessage()' method '[ci' 'skip].' commit dccbd7392c3546440657bdcf6ed658462bbf6008 Author: Alan Garny '' Date: Mon Dec 14 18:29:14 2015 +0100 Revert the last commit '(!!)' '[ci' 'skip].' commit ecbfd8cb5345bf2b079a052c809d1ec65c5d34f0 Author: Alan Garny '' Date: Mon Dec 14 18:22:53 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 5c00cff3e99db913ddd08b26c5bafa32de451cfb Author: Alan Garny '' Date: Mon Dec 14 18:06:13 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 9052be0c1f63026cc929049b0388c866eba52933 Author: Alan Garny '' Date: Mon Dec 14 17:48:44 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d7e02397339db0e6458a44221be4eb250d1f30f8 Author: Alan Garny '' Date: Mon Dec 14 16:43:47 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 5f61cf5898597d6e62bc7dd8dd6b9e8609a833d3 Author: Alan Garny '' Date: Fri Dec 11 19:03:13 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 33d5617f59312750b7d9b43b1d481e429e9211b4 Merge: 87a77cf3c 977474819 Author: Alan Garny '' Date: Fri Dec 11 19:02:51 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit d406ca51f32be0f2a528271eb771d6fd6bb63246 Merge: 131be6932 977474819 Author: Alan Garny '' Date: Fri Dec 11 18:35:46 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 977474819a82a1819c19ac8213e6e7c168d031e2 Merge: e8929b626 e2da49c0f Author: Alan Garny '' Date: Fri Dec 11 18:34:14 2015 +0100 Merge pull request '#844' from opencor/issue843 Dropped the Windows 32-bit and Linux 32-bit versions of OpenCOR '(closes' '#843).' commit e2da49c0fcae593624c71857f6bacbe1c1866d8b Author: Alan Garny '' Date: Fri Dec 11 18:20:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843).' commit 2c09fe9ac69346f2f7830128f94bd3610c1f3e38 Author: Alan Garny '' Date: Fri Dec 11 17:33:03 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843).' commit 4589e629af022ecf8dc88aa611997827c98e1bf6 Author: Alan Garny '' Date: Fri Dec 11 17:26:26 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit d98a1d25c5bf222d0f2a47987eba240f6f361aca Author: Alan Garny '' Date: Fri Dec 11 17:18:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 4001be020585caf567a21d20628ca34a2b5223c4 Author: Alan Garny '' Date: Fri Dec 11 17:05:45 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 43e39b6cf515e68b61d136af43283f6e72179d1c Author: Alan Garny '' Date: Fri Dec 11 17:02:28 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 4da1bdf13a28688fa7bf95a8f2704845a0811a65 Author: Alan Garny '' Date: Fri Dec 11 16:54:11 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit d330f9db54034907c530ed5245dd2d37694383c9 Author: Alan Garny '' Date: Fri Dec 11 16:53:53 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 9bed89a83d72c1d6a4b0204671df72a88e4aa3c9 Author: Alan Garny '' Date: Fri Dec 11 16:43:41 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit dd4c63f0a2cab69ecaaf7b7262935de1520f65d1 Author: Alan Garny '' Date: Fri Dec 11 15:35:52 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 331112a47d4bc8f9d4724b81a2fde354f49d909c Author: Alan Garny '' Date: Fri Dec 11 11:56:23 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 60e39e39078cd4c54ee02d61a61dc278e5ee3234 Author: Alan Garny '' Date: Fri Dec 11 11:34:17 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 68887b927d4665a2bf9d50faa727b726354868fd Author: Alan Garny '' Date: Fri Dec 11 11:32:10 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 453793845a0ab9cc46ab8ecc580b53c914752006 Author: Alan Garny '' Date: Fri Dec 11 10:59:52 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit f6a405f21a10baf947f2f51fe6d3399bc92f6d65 Author: Alan Garny '' Date: Fri Dec 11 10:34:58 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit c94c0b5de59e0543a6acf6f8a1a47e1ebecadeaa Author: Alan Garny '' Date: Fri Dec 11 09:56:17 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 9de5fefd208abfa83c39b3c3a75fe67ac7cdb03b Author: Alan Garny '' Date: Fri Dec 11 09:43:11 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit a8a26dcbe541223e53eaa59cb7a896e9edc229ee Author: Alan Garny '' Date: Thu Dec 10 17:55:23 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 9ba7d36f6168eef2cdd92ab2be0dcaf2214d662f Author: Alan Garny '' Date: Thu Dec 10 17:40:04 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit cdf32c6f28ca22880dc6d625d91c828e07d67afa Author: Alan Garny '' Date: Thu Dec 10 14:45:53 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit ad482c9afcd06cdb601b3afc7f1e349106d77f45 Author: Alan Garny '' Date: Thu Dec 10 11:16:37 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 5fe32c3d07c9987419d624e1de7aec5ad81f8bfc Author: Alan Garny '' Date: Thu Dec 10 11:13:40 2015 +0100 Some work towards dropping the Windows 32-bit and Linux 32-bit versions of OpenCOR '(#843)' '[ci' 'skip].' commit 87a77cf3c179542fa1431752ad8bab5d04c7a899 Author: Alan Garny '' Date: Wed Dec 9 18:10:58 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit eabaad78d22d91e2c71118d09f5a315e657c6ad4 Author: Alan Garny '' Date: Wed Dec 9 18:08:59 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 798b45c14b34ff9c9168609600cc38e019536661 Author: Alan Garny '' Date: Wed Dec 9 18:08:12 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 131be693223f4e17828dafc48ba2f632991617be Merge: f24531db3 e8929b626 Author: Alan Garny '' Date: Wed Dec 9 18:04:29 2015 +0100 Merge branch ''\''master'\''' into issue825. commit e8929b62667c00b5272039f4f387a5d9ec10374a Author: Alan Garny '' Date: Wed Dec 9 18:01:37 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c5cb02fabee7c77add1d0b45c57cd3e29e11572e Author: Alan Garny '' Date: Wed Dec 9 17:41:13 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 650dd966288bc7e68c9504028934e6e418c48ed9 Author: Alan Garny '' Date: Wed Dec 9 17:23:42 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit f24531db319a69ca9c1f2918d941ac502182c439 Merge: 6aaa8b4c0 89e69f0a3 Author: Alan Garny '' Date: Wed Dec 9 15:51:09 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 17d5dc949d92088ba0ee9f5a8afd015e7bc12ed4 Merge: dbc59167c 89e69f0a3 Author: Alan Garny '' Date: Wed Dec 9 15:50:51 2015 +0100 Merge branch ''\''master'\''' into issue590. commit 89e69f0a39759cfa22f2aff4a87fb1ef989386f3 Author: Alan Garny '' Date: Wed Dec 9 15:50:36 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit dbc59167ce07299e548ae160fdc6556b6ac97408 Author: Alan Garny '' Date: Wed Dec 9 15:30:06 2015 +0100 Single Cell view: some work on making the view more file specific '(#590)' '[ci' 'skip].' commit 6aaa8b4c07fa31013bfb89c10ba715dd66525906 Merge: 89f6228b8 17bade4c3 Author: Alan Garny '' Date: Wed Dec 9 09:49:46 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 17bade4c3e22d5f951806110530b9f2c470c26bf Author: Alan Garny '' Date: Wed Dec 9 09:48:52 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 89f6228b84d990681b35d162eb431f5ffdecdc6f Merge: 952b36a70 cb8b722bd Author: Alan Garny '' Date: Tue Dec 8 19:23:18 2015 +0100 Merge branch ''\''master'\''' into issue825. commit cb8b722bd2411009669af2d99c6e7ec0cab08c22 Author: Alan Garny '' Date: Tue Dec 8 19:22:45 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 952b36a702c2c8f814a51ebeba2f9af6679e4c0f Merge: f04fee0fa 20e2f7d52 Author: Alan Garny '' Date: Tue Dec 8 19:17:45 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 20e2f7d5259a60efb3be4e40ceb26d76c85e59bf Author: Alan Garny '' Date: Tue Dec 8 19:08:45 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 4a5768d5e18d80c2023999d245320869dbc0e5b2 Author: Alan Garny '' Date: Tue Dec 8 17:41:45 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b1fc6c2d2ebbdeb127d270f1d83a517cbe24bc6b Author: Alan Garny '' Date: Tue Dec 8 17:12:56 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit befc15a5303c7c91c89649a503fbcad2b1c99f11 Author: Alan Garny '' Date: Tue Dec 8 15:54:58 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6da114bf63b815ee50e2553a457d9fe0842d9a01 Author: Alan Garny '' Date: Tue Dec 8 15:45:35 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ef0666be8a7aaac102a3f21aae1275786e68a107 Author: Alan Garny '' Date: Tue Dec 8 15:15:06 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit f04fee0fa3fdb0b0bb6aaed35ac10279e0c0132c Merge: a1d93d5b5 7112a81e3 Author: Alan Garny '' Date: Tue Dec 8 14:03:26 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 7112a81e3d4aa02037287c549fe388317f7aa786 Author: Alan Garny '' Date: Tue Dec 8 14:02:57 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a1d93d5b5de97494b2a363ed45ac00e75095cf61 Merge: df6d90628 d25099705 Author: Alan Garny '' Date: Mon Dec 7 17:30:17 2015 +0100 Merge branch ''\''master'\''' into issue825. commit d2509970565ef7bd74b68f8b3fa73db8a36dd7ef Merge: 5c43f6e4d 8333731c1 Author: Alan Garny '' Date: Mon Dec 7 17:29:15 2015 +0100 Merge pull request '#842' from opencor/issue840 OpenSSL: upgraded to version 1.0.2e '(closes' '#840).' commit 8333731c1ff1242441236769ce61b1bc1ed124b6 Author: Alan Garny '' Date: Mon Dec 7 17:06:04 2015 +0100 OpenSSL: upgraded to version 1.0.2e '(#840).' commit df6d906288818f777b322bc85eed400803962463 Merge: 6b921f6be 5c43f6e4d Author: Alan Garny '' Date: Mon Dec 7 16:39:01 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 5c43f6e4d0085247ca68dc527a3c8dc336261d2b Author: Alan Garny '' Date: Mon Dec 7 16:37:59 2015 +0100 Prevent messages here and there from being selectable '[ci' 'skip].' $'\020Note:' to prevent $'QMessageBox\342\200\231s' text from being selectable '(on' OS X only, 'apparently)' had an indirect '(?!)' effect on our Single Cell view and the marker of our graph $'panels\342\200\246' commit c2745808ac8cc1b3153bb1d7e08b851734e45c42 Author: Alan Garny '' Date: Fri Dec 4 17:24:45 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6b921f6bec319fb2353f3340def374fb7e87ac48 Author: Alan Garny '' Date: Fri Dec 4 16:17:26 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 5a7d6e2f0d6a3a797d6bc44d659e8ed14acdf105 Author: Alan Garny '' Date: Fri Dec 4 15:49:50 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 56d5f5a950fb4184c73b338f21f6d5d3b088cf82 Author: Alan Garny '' Date: Fri Dec 4 15:49:39 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 64d2330c080fad11a5586bc0825bbd160913bc0d Author: Alan Garny '' Date: Fri Dec 4 15:16:17 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 3b7c6904763d79d5558e7cef9c05758e2234daed Author: Alan Garny '' Date: Fri Dec 4 14:42:23 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit da04b02b52ecde36a5d775c6acde57e4db7a76bd Author: Alan Garny '' Date: Fri Dec 4 11:56:53 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit a2fe9bbf84091687a7e97da9e41a09157fc4c325 Author: Alan Garny '' Date: Fri Dec 4 11:14:48 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 889cbf4b78d2586a88534eb53bb51c5c0a954771 Author: Alan Garny '' Date: Fri Dec 4 10:05:45 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 0979038f09b35c185a4d19014025146331860c21 Author: Alan Garny '' Date: Fri Dec 4 09:47:49 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 7062a3022b2ccd62033a6809ef975fe11d08fcf2 Author: Alan Garny '' Date: Thu Dec 3 19:19:48 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 22e57650b5ddf113040a715ff4e85e96b2a17303 Author: Alan Garny '' Date: Thu Dec 3 18:17:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit c43f533f35a303c160e8f9cedad613b8f0e780b2 Author: Alan Garny '' Date: Thu Dec 3 18:00:55 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 2a4e6be56b2f1b1bc6e36c5de6a9dfb7b6345ad6 Author: Alan Garny '' Date: Thu Dec 3 17:11:14 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 9ac15fcba392db0a5e13f0935a5f66de9524932f Author: Alan Garny '' Date: Thu Dec 3 13:28:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 70d4f18e1307a3f8a39ba99e1bb68e83b78fb9a4 Author: Alan Garny '' Date: Thu Dec 3 10:44:06 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 6b7fe57fc8cfb23c448641a06ce1fa55dd3d4131 Author: Alan Garny '' Date: Thu Dec 3 10:38:10 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 60c02cc2b520a69a492918bbd4ec82d7357eb332 Author: Alan Garny '' Date: Thu Dec 3 10:29:00 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 28d7b2c6ae22f93e3c072a0a026f0788324f266f Author: Alan Garny '' Date: Thu Dec 3 10:26:50 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 8f7cc4bf0fb0e725791ea2d42f8098fd18889ab1 Author: Alan Garny '' Date: Wed Dec 2 19:56:06 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 5e96bc324713a7b6df07f9d04796e72f4ee5396c Author: Alan Garny '' Date: Wed Dec 2 19:49:55 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 5aee0add961db88446f8931b0d53fdb7da8a7030 Author: Alan Garny '' Date: Wed Dec 2 19:39:35 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 508c4f3d80bbd8f0bdadd326120b721c377ea460 Author: Alan Garny '' Date: Wed Dec 2 18:15:24 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 7e64733718fedbbacbcf5afa401e7a4fa74cfc93 Author: Alan Garny '' Date: Wed Dec 2 18:11:51 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 55e0f7afd19a25a1a1aa1fff45e3582adf3b4444 Author: Alan Garny '' Date: Wed Dec 2 17:09:27 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 75017ceb596bd3c2129d38316a703efc1ed90188 Author: Alan Garny '' Date: Wed Dec 2 15:51:26 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 98dd599f1135c67f7c3c0a1162f452645c9ee04a Author: Alan Garny '' Date: Wed Dec 2 15:49:38 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 399fdffa98306b759995de96252ac29b53ef963f Author: Alan Garny '' Date: Wed Dec 2 15:46:09 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit daf8a243320df71fe1bc3ec9a153879ead98ae24 Author: Alan Garny '' Date: Wed Dec 2 15:45:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit e4139ac056e7715b82d549b8755e9c402d809424 Author: Alan Garny '' Date: Wed Dec 2 15:16:12 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 5638a7226ea3bc82c29b5d592508076bf72e8516 Author: Alan Garny '' Date: Wed Dec 2 13:38:40 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 39da6f390383db9ae7f638c5e609f42797b26484 Author: Alan Garny '' Date: Wed Dec 2 12:55:21 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 257e4ec0675923d7586f40413631d50e7cc6e3fd Author: Alan Garny '' Date: Wed Dec 2 11:44:35 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 929e8fe471a5097136643534ff8f36bb989d0bfd Author: Alan Garny '' Date: Wed Dec 2 11:36:41 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 6dcda71726f673b03ec610370ca7f5950a5201d6 Author: Alan Garny '' Date: Wed Dec 2 11:17:32 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 42af0f52fdec4512e809cb30699f86ac03fb1b45 Author: Alan Garny '' Date: Wed Dec 2 11:03:16 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 29043de10769e89d271d2cd82171348e4750ec39 Author: Alan Garny '' Date: Wed Dec 2 10:12:42 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit ca30110ef9e5e7f7eca5266cd3193ba99e483e13 Merge: 5545d59fa a87b95baa Author: Alan Garny '' Date: Tue Dec 1 19:52:24 2015 +0100 Merge branch ''\''master'\''' into issue825. commit a87b95baa32f8bc9f86e40858ed585a70eaad046 Author: Alan Garny '' Date: Tue Dec 1 19:51:40 2015 +0100 Travis CI: 'argh!' Apparently, we canNOT ''\''safely'\''' run tests on OS X '(see' '2bcdece).' commit 5545d59faabdbd2ff4dae2e599322bc5dfad0bb8 Merge: ebddd580a bcc4d7ac0 Author: Alan Garny '' Date: Tue Dec 1 19:42:23 2015 +0100 Merge branch ''\''master'\''' into issue825. commit bcc4d7ac0ebb51c31650fd2af2620b95e2b98691 Author: Alan Garny '' Date: Tue Dec 1 19:31:40 2015 +0100 ZIP support: updated the Qt ZIP files. commit 0ed7187510a79524e65833857c13ba8b0fdc7ba6 Author: Alan Garny '' Date: Tue Dec 1 18:54:02 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 2bcdece8cc7513cbfd986db8b5f71abbd54bd750 Author: Alan Garny '' Date: Tue Dec 1 18:40:08 2015 +0100 Travis CI: apparently, we can ''\''safely'\''' run tests on OS X even though we are using Qt 5.4.2 and not Qt 5.5.1 '[ci' 'skip].' We are skipping CI for now since we are currently having a small problem with $'QZip\342\200\246' commit ebddd580a21f8790df08df0aae77a5983c482e11 Merge: 68f50ab27 c6431a430 Author: Alan Garny '' Date: Tue Dec 1 17:04:25 2015 +0100 Merge branch ''\''master'\''' into issue825. commit c6431a430fe0226b3f7611e2571f8053bba53e16 Author: Alan Garny '' Date: Tue Dec 1 17:03:48 2015 +0100 ZIP support: updated the Qt ZIP files. commit 68f50ab2759a9d6500271d7f07ed6866ce42148f Author: Alan Garny '' Date: Tue Dec 1 15:46:10 2015 +0100 COMBINE archive: improved the tests '[ci' 'skip].' commit cf3d36e6ba24b0fca5608dcc26dc8f4a8b4f34a7 Author: Alan Garny '' Date: Tue Dec 1 14:53:43 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 485b0ab1c7a5373ebf6dec977a02a8c927ce5df6 Author: Alan Garny '' Date: Tue Dec 1 14:13:26 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit 02673d084dbf2c9071ec6345c607705943b0ae4e Author: Alan Garny '' Date: Tue Dec 1 12:51:38 2015 +0100 Slight update to the downloads documentation '[ci' 'skip].' commit fb784dbec088f3de294ea0272432d40c8f19cb73 Merge: 53288de38 1c867f016 Author: Alan Garny '' Date: Tue Dec 1 12:49:12 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 1c867f0167b896f6c7e9441b5d1b102c8e04b5b5 Merge: be6ea445a 134845d13 Author: Alan Garny '' Date: Tue Dec 1 12:47:47 2015 +0100 Merge pull request '#839' from opencor/issue838 CellML Text view: now require the 'user'\''s' agreement before saving a CellML file using a different CellML version '(closes' '#838).' commit 134845d13914f9a264ba382c55c9134e09127fc2 Author: Alan Garny '' Date: Tue Dec 1 11:49:31 2015 +0100 CellML Text view: now require the 'user'\''s' agreement before saving a CellML file using a different CellML version '(#838).' commit a97c63c5ef3a7495e620c012dabd05bd3ec7003d Author: Alan Garny '' Date: Tue Dec 1 11:40:09 2015 +0100 CellML Text view: some work towards requiring the 'user'\''s' agreement before saving a CellML file using a different CellML version '(#838)' '[ci' 'skip].' commit be6ea445aa074d3da80cde36744ed786c6014831 Author: Alan Garny '' Date: Tue Dec 1 11:07:47 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ee8f7ab7399ecd4e5de1b724b736a7eeac98df62 Author: Alan Garny '' Date: Tue Dec 1 09:45:00 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 09e93863a9e774c2c460f3234926a9726b2f59d1 Author: Alan Garny '' Date: Mon Nov 30 10:44:58 2015 +0100 Slight updates to the user documentation '[ci' 'skip].' commit 53288de381eb4f496ebb92da574a22572e9b5dd2 Author: Alan Garny '' Date: Fri Nov 27 18:05:02 2015 +0100 COMBINE archive: some work on loading/saving a COMBINE archive '[ci' 'skip].' commit bbd19ec7a6157b860208e5f7ea15cc7bfb23ac80 Merge: c1c224c9c 26774f86d Author: Alan Garny '' Date: Fri Nov 27 17:34:47 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 26774f86df5f959a8446958c25b328b2b4d3af4c Author: Alan Garny '' Date: Fri Nov 27 17:34:22 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c1c224c9c50479b53d9be21176c2172202e8429e Author: Alan Garny '' Date: Fri Nov 27 17:23:54 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit b712c5211fc8fd01d8f2d311dc74a54fe6a18ad8 Merge: a04540b40 9aad3e31b Author: Alan Garny '' Date: Fri Nov 27 13:00:57 2015 +0100 Merge branch ''\''master'\''' into issue825. commit 9aad3e31b9b5460f9aff46e8b41430d5ad3ac3c6 Author: Alan Garny '' Date: Fri Nov 27 12:58:52 2015 +0100 Some minor cleaning up. commit 177b16333ff730381b807d3c1291527d2a97d0f2 Author: Alan Garny '' Date: Fri Nov 27 11:50:22 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit eb4b736aaacfb5584fcb5380affc7ef6c6494dc0 Author: Alan Garny '' Date: Fri Nov 27 11:46:12 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a04540b40ea413062f61f69a91bcaf2a2ee12dbd Merge: 0dd919037 cd63c31f3 Author: Alan Garny '' Date: Fri Nov 27 10:50:28 2015 +0100 Merge branch ''\''master'\''' into issue825. commit cd63c31f307b5f51f329d5c63ecd304a37b5d8ab Author: Alan Garny '' Date: Fri Nov 27 10:49:51 2015 +0100 CellML export: slight improvement to the way things are formatted when exporting a CellML 1.1 model to CellML 1.0 '[ci' 'skip].' commit fe9bf3695d2a88eb3dc01c6abcfcff352081aad1 Author: Alan Garny '' Date: Fri Nov 27 10:41:46 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0dd919037d3c8b98a3ca8af6897720723e8e848d Merge: db1f391b9 bf4b9f9ab Author: Alan Garny '' Date: Fri Nov 27 10:15:16 2015 +0100 Merge branch ''\''master'\''' into issue825. commit bf4b9f9ab56b60634dec25680637b7ed356b9d76 Author: Alan Garny '' Date: Fri Nov 27 10:14:51 2015 +0100 Slight updates to the user documentation '[ci' 'skip].' commit 34503202c39a8a29fab3cba7a43f86e258a42ce8 Author: Alan Garny '' Date: Fri Nov 27 09:48:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit db1f391b931ce5724f9d0aa788c40b2c25a85ce6 Author: Alan Garny '' Date: Thu Nov 26 18:26:20 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 36767dbfdc9b66d93ff71712632be36ca833587d Author: Alan Garny '' Date: Thu Nov 26 18:13:11 2015 +0100 Single Cell view + SED-ML: some work towards supporting the import of a basic simulation from SED-ML '(#825)' '[ci' 'skip].' commit 52db149ef6b9c70431978a48f8bd16ad29840895 Merge: 6c8fcd399 623ea6558 Author: Alan Garny '' Date: Thu Nov 26 10:51:44 2015 +0100 Merge pull request '#837' from opencor/issue836 CellML support: the latest stable version of CellML is now used when creating a new CellML file '(closes' '#836).' commit 623ea6558698f418f9997330de9d93da782fc87e Author: Alan Garny '' Date: Thu Nov 26 10:36:37 2015 +0100 CellML support: the latest stable version of CellML is now used when creating a new CellML file '(#836).' commit 7bf4905fdd1b7c6304d75819e4b6cd892b8eb1ee Merge: 0dca2a67a 6c8fcd399 Author: David Brooks '' Date: Thu Nov 26 12:26:45 2015 +1300 Merge branch ''\''master'\''' into libbsml commit 6c8fcd399f093c4f27efda2cdeae547e36f0491e Author: Alan Garny '' Date: Wed Nov 25 16:34:21 2015 +0100 New snapshots. commit 433a99c3d3b34e8fa1db0f0ead9184aca547fe60 Author: Alan Garny '' Date: Wed Nov 25 16:33:05 2015 +0100 Slight update to the user documentation '[ci' 'skip].' commit fb64ee411cfef894a6b7ba150b770e4c7c55ad9b Author: Alan Garny '' Date: Wed Nov 25 16:23:33 2015 +0100 Oops, had forgotten to translate something '(#830)' '[ci' 'skip].' commit ae855126ffbd3368e09e341f5dcb13cc25c1b0e6 Author: Alan Garny '' Date: Wed Nov 25 16:19:55 2015 +0100 Slight update to the downloads page '[ci' 'skip].' commit 5a3288f6ffc5c0feaa70b7e05df43472f419198f Merge: 7378f5b7c 0c2eefa56 Author: Alan Garny '' Date: Wed Nov 25 15:43:33 2015 +0100 Merge pull request '#834' from opencor/issue830 CellML Text view: hyphens and periods are now allowed in 'cmeta:id'\''s' '(closes' '#830).' commit 0c2eefa5640c8a1907e1e0393231808c68e931bf Author: Alan Garny '' Date: Wed Nov 25 15:21:48 2015 +0100 CellML Text view: hyphens and periods are now allowed in 'cmeta:id'\''s' '(#830).' commit 7378f5b7cea7d7e7624fd77024b09a5d169bb5b6 Merge: ba3f11e67 9ca08571f Author: Alan Garny '' Date: Tue Nov 24 19:35:37 2015 +0100 Merge pull request '#833' from opencor/issue832 SED-ML support: refactored some SED-ML related code in the Single Cell view plugin '(closes' '#832).' commit 9ca08571f6ab575b15faa8d4890316e0f514d9ff Author: Alan Garny '' Date: Tue Nov 24 19:22:04 2015 +0100 SED-ML support: refactored some SED-ML related code in the Single Cell view plugin '(#832).' commit ba3f11e67eb042efa12b596b18002ac75e545242 Author: Alan Garny '' Date: Tue Nov 24 13:50:25 2015 +0100 Slight update to our downloads page '[ci' 'skip].' commit e9f10773286a3e616af4a290a27df562bc8173a2 Author: Alan Garny '' Date: Tue Nov 24 13:12:21 2015 +0100 Single Cell view + SED-ML: improved the formatting of the SED-ML files we generate '[ci' 'skip].' commit 77170f14ca9c4cebfc405104fb31f4e57ca9ee33 Author: Alan Garny '' Date: Tue Nov 24 11:40:57 2015 +0100 Raw SED-ML view: minor GUI improvement '[ci' 'skip].' commit f25084c28c1ca4c5e06253f660c68483d8e8bffd Merge: a11d8f424 cc72c9850 Author: Alan Garny '' Date: Tue Nov 24 11:38:46 2015 +0100 Merge pull request '#831' from opencor/issue682 Raw SED-ML view '(closes' '#682).' commit cc72c9850a1cb7ad586fdaf344a465412fa19de3 Author: Alan Garny '' Date: Tue Nov 24 10:55:53 2015 +0100 Some work towards having a Raw SED-ML view '(#682).' commit ca5ef42a9a488f4231ea0e46a312a834a2f16fe2 Author: Alan Garny '' Date: Tue Nov 24 10:31:57 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit 6bcb173b3e0d7c19ee5edcdba93b0b0830740e28 Author: Alan Garny '' Date: Tue Nov 24 10:02:46 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit 8f808a1aad12c70645d5ea8ea8cca5d8c0b5043a Author: Alan Garny '' Date: Mon Nov 23 17:09:54 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit b967125def141383da219a8c1b100811f9903795 Author: Alan Garny '' Date: Mon Nov 23 16:03:12 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit cd4906ed6ac850af94f763ca73b5a875f2d4b7a2 Author: Alan Garny '' Date: Mon Nov 23 15:32:23 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 5ef391ece7469000c1dc10fa72f9d421d3a8e01a Author: Alan Garny '' Date: Mon Nov 23 15:18:02 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 8ab9d3f944f7bf9f696641f23e0bbb73286a162f Author: Alan Garny '' Date: Mon Nov 23 14:51:44 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit ad5c51fae2a095e3d0420e4fdc00d2e3a9f114c1 Author: Alan Garny '' Date: Mon Nov 23 12:59:43 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit f9e80e3d046a38db3583062aee9a227c2f2673a6 Author: Alan Garny '' Date: Mon Nov 23 11:48:30 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit 9804fe69b1dee40db5bbf801e86c41820ebc81bd Author: Alan Garny '' Date: Mon Nov 23 10:42:19 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' commit c90f4d077c66c5b8bef0e784686fba1f327e5a16 Author: Alan Garny '' Date: Sun Nov 22 11:17:39 2015 +0100 Some work towards having a Raw SED-ML view '(#682)' '[ci' 'skip].' We currently have a copy/paste of both the CoreCellMLEditing and RawCellMLView plugin, which we now need to customise for SED-ML... commit a11d8f424f003ec11fff51bc120ae35fe8eeae3f Author: Alan Garny '' Date: Sun Nov 22 01:27:13 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 4890de43ddc891ee52bb28a33af38c3e2f87b614 Author: Alan Garny '' Date: Fri Nov 20 21:12:15 2015 +0100 Some minor cleaning up. commit 18edf4391b9e9414755fa09b896ae472271eb639 Author: Alan Garny '' Date: Fri Nov 20 18:09:34 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 2357298c0443bed2ac5981ef820cadc2c4a7a599 Author: Alan Garny '' Date: Fri Nov 20 17:49:28 2015 +0100 Some minor cleaning up. commit e8cfce7efb60a0111d8b6b9b8254db4a415aa970 Author: Alan Garny '' Date: Fri Nov 20 17:34:43 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit df007ebde2b06d54aa0d77289586c24d1c458155 Author: Alan Garny '' Date: Fri Nov 20 17:08:13 2015 +0100 Some minor cleaning up. commit a584d49609354bbdca9f938a18cc39b5c07794d0 Author: Alan Garny '' Date: Fri Nov 20 16:20:22 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 828c370002c32a67ac82e056a6dd1e7d31eb8ded Author: Alan Garny '' Date: Fri Nov 20 14:56:14 2015 +0100 Some minor cleaning up. commit 3538f64ea2aa31de68387c32a100c07255c3e20f Author: Alan Garny '' Date: Fri Nov 20 14:03:46 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ea43851acfb55345d62015d256a4afa7a147d573 Author: Alan Garny '' Date: Fri Nov 20 13:49:35 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit df469e1bb7a42c3db3f877f90f0c7f5ef4e60dda Author: Alan Garny '' Date: Fri Nov 20 13:17:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit e703d36e19ebfbefd4adb2ea0942cfc2f3e1f6b8 Author: Alan Garny '' Date: Thu Nov 19 17:54:32 2015 +0100 Argh, issue '#826' 'wasn'\''t' building on Windows '[ci' 'skip].' commit 32ef6bbc4da85e2a5a5fcd62515bd9780f1d16eb Merge: bd8f20d4b b1da4bca8 Author: Alan Garny '' Date: Thu Nov 19 17:39:20 2015 +0100 Merge pull request '#829' from opencor/issue826 SED-ML support: made it possible to create a new SED-ML file '(closes' '#826).' commit b1da4bca8dfc27f8547e9842fbda9495c1372e6a Merge: 48722cc28 bd8f20d4b Author: Alan Garny '' Date: Thu Nov 19 16:54:06 2015 +0100 Merge branch ''\''master'\''' into issue826. commit bd8f20d4b012e98e2be40c44efd3eb8fe648e2cb Author: Alan Garny '' Date: Thu Nov 19 16:52:30 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 43cb5bc231f47f552610cc469eb63849ca279dee Merge: 18ecb3edf af26325eb Author: Alan Garny '' Date: Thu Nov 19 16:49:27 2015 +0100 Merge pull request '#828' from opencor/issue827 CellML support: 'don'\''t' distinguish between CellML 1.0 and CellML 1.1 anymore when creating a new CellML file '(closes' '#827).' commit 18ecb3edf397ae5c90ea6f6dd8964ed908b44f2c Author: Alan Garny '' Date: Thu Nov 19 16:38:43 2015 +0100 Slight update to the download page following issue '#826' '[ci' 'skip].' commit 48722cc281dab6d140c2aa0038b28f2bb1593f56 Author: Alan Garny '' Date: Thu Nov 19 16:35:40 2015 +0100 SED-ML support: made it possible to create a new SED-ML file '(#826).' commit 6b03cabd30e8b609ff702ef7161369f7ea27d01c Author: Alan Garny '' Date: Thu Nov 19 16:25:52 2015 +0100 Slight update to the download page following issue '#827' '[ci' 'skip].' commit af26325eb11e70c20da53deb97b0ce0382b98e67 Author: Alan Garny '' Date: Thu Nov 19 16:21:41 2015 +0100 CellML support: 'don'\''t' distinguish between CellML 1.0 and CellML 1.1 file when creating a new CellML file '(#827).' commit cc86c0a73428bb480b6d0d7a374fbaa7209e427a Merge: b9feb2a35 5a0b63d8b Author: Alan Garny '' Date: Wed Nov 18 18:11:40 2015 +0100 Merge pull request '#824' from opencor/issue820 Single Cell view: X axis now lines up when adding a new graph panel '(closes' '#820).' commit 5a0b63d8b15f79f909839168b0c8622b474e72af Author: Alan Garny '' Date: Wed Nov 18 17:41:52 2015 +0100 Single Cell view: X axis now lines up when adding a new graph panel '(#820).' commit b9feb2a356b9791a7aca585bd3a1a4bf8a2c4ed5 Author: Alan Garny '' Date: Wed Nov 18 17:25:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 3a7bdbc5d5245980ab585c273eaf15277336ef99 Author: Alan Garny '' Date: Wed Nov 18 15:25:55 2015 +0100 Slight updates to the user documentation '[ci' 'skip].' commit 36d1231fea9dd3149d3e40428867fabed922957c Merge: 8534e990e 3464edb88 Author: Alan Garny '' Date: Wed Nov 18 15:17:00 2015 +0100 Merge pull request '#823' from opencor/issue822 Raw CellML view: '"reformat"' 'doesn'\''t' un-escape HTML entities anymore '(closes' '#822).' commit 3464edb8895f80c5b5f3459ad9315edca91a280c Author: Alan Garny '' Date: Wed Nov 18 14:32:05 2015 +0100 Raw CellML view: '"reformat"' $'doesn\342\200\231t' un-escape HTML entities anymore '(#822).' Well, actually, 'QDomAttr::value()' does automatically un-escape, so we escape $'back\342\200\246' commit 8534e990e1b0983ebc15c8104f5b3dc6e398ec42 Author: Alan Garny '' Date: Wed Nov 18 14:28:30 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0dca2a67acfde11784994aad2a0456b31e643c5d Author: David Brooks '' Date: Wed Nov 18 21:31:35 2015 +1300 Get a clean build with current '`libbiosignalml`.' commit 51f25ae88333f54879a2d7c4c7cbcf8ebb6e0c9c Author: David Brooks '' Date: Wed Nov 18 21:28:46 2015 +1300 Update '`typedobject`' and '`libbiosignalml`' libraries. commit 753d536be277f5a886e1081e32f8750e7aef6f8a Author: David Brooks '' Date: Wed Nov 18 21:19:09 2015 +1300 Updates required for latest master. commit 8537cfa3fcec5a440ded3d6e1f163ccc65e95519 Merge: 6238c08ea d2521c38f Author: David Brooks '' Date: Wed Nov 18 20:41:26 2015 +1300 Merge branch ''\''master'\''' into libbsml commit d2521c38f5111573b3896b4a1f127e85347a1625 Merge: 8f349be7e f76f1135a Author: Alan Garny '' Date: Tue Nov 17 18:39:08 2015 +0100 Merge pull request '#821' from opencor/issue812 libSBML: upgraded to version 5.12.0 '(closes' '#812).' commit f76f1135abdcbac909ac8f9c37aeec4b2e6b8e01 Author: Alan Garny '' Date: Tue Nov 17 17:12:47 2015 +0100 There is no need to specify a deployment target of 10.7 for our various APIs. Indeed, they are $'\342\200\230only\342\200\231' libraries, so no GUI-related stuff involved. Also, to specify the deployment target through ccmake means that we must have the corresponding SDK '(i.e.' Mac OS X 10.7 SDK in the present 'case),' which we $'don\342\200\231t' '(or,' rather, $'can\342\200\231t' bother to 'have).' commit f381ce6b222c134d15782d2abb03c20fc5fc5ff2 Author: Alan Garny '' Date: Tue Nov 17 16:39:14 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 '(#812)' '[ci' 'skip].' commit bee2a504a0dd5f44ad2c509e5941272e7f7ce5cc Author: Alan Garny '' Date: Tue Nov 17 16:12:11 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 '(#812)' '[ci' 'skip].' commit 8a3641a7afe191029aaee38caa10e1f5845d3c9f Author: Alan Garny '' Date: Tue Nov 17 15:53:49 2015 +0100 libSBML: some work towards upgrading to version 5.12.0 '(#812)' '[ci' 'skip].' commit 8f349be7e83508f1308ef0127312c8f1b379983e Author: Alan Garny '' Date: Mon Nov 16 18:47:26 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b813da05aa25446ce54e87a074db0eb51719cd7c Merge: 3301b66bc ac2eebca2 Author: Alan Garny '' Date: Mon Nov 16 18:31:40 2015 +0100 Merge pull request '#819' from opencor/issue816 libgit2: upgraded to version 0.23.4 '(closes' '#816).' commit ac2eebca271200b12033a3a37c8a91b4aa300754 Author: Alan Garny '' Date: Mon Nov 16 18:07:03 2015 +0100 libgit2: upgraded to version 0.23.4 '(#816).' commit 58a55b4e0d3afef2d032d98f4dcefeff57a262de Author: Alan Garny '' Date: Mon Nov 16 17:50:12 2015 +0100 libgit2: some work towards upgrading to version 0.23.4 '(#816)' '[ci' 'skip].' commit 3301b66bc178a0e333e243576ee563d388accba6 Author: Alan Garny '' Date: Mon Nov 16 17:48:45 2015 +0100 Updated our downloads page '[ci' 'skip].' commit a572d226f924f53f3a32a43a6c1dfe3460ff3dd4 Merge: b451acadb ed218cc45 Author: Alan Garny '' Date: Mon Nov 16 17:40:56 2015 +0100 Merge pull request '#818' from opencor/issue817 Single Cell view: development mode is not allowed anymore on a read-only file '(closes' '#817).' commit ed218cc45d6a05df39c0a91f893299493f97f915 Author: Alan Garny '' Date: Mon Nov 16 17:08:25 2015 +0100 Single Cell view: development mode is not allowed anymore on a read-only file '(#817).' commit b451acadb5b6aae0986808c2594e98ad1122c00c Author: Alan Garny '' Date: Sun Nov 15 18:17:25 2015 +0100 Argh, wrong copy/paste from our Qt 5.5 branch. We 'don'\''t' need and want XcbQpa '(since' 'it'\''s' not available on Qt '5.4.2)!' commit c3fbe4928e9534cb6fd5929c6139757613c903bc Author: Alan Garny '' Date: Sun Nov 15 18:14:22 2015 +0100 Linux packaging: not sure why I removed it, but we need DBus on 'Linux!' commit 5f2e2761a806ea2c2d5b2d3be95ad368d501a8b2 Author: Alan Garny '' Date: Sun Nov 15 16:23:37 2015 +0100 New snapshots. commit 12ffc0b6e465989ec6349942cf79e89e5a007912 Author: Alan Garny '' Date: Sun Nov 15 15:45:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit dbc62f1f492795982fc65118251788dbbe1b6a90 Merge: a3b17ba18 79a8c98ce Author: Alan Garny '' Date: Sun Nov 15 14:26:54 2015 +0100 Merge pull request '#814' from opencor/issue810 Single Cell view: the ability to create/update a CellML file from some simulation data is now an option '(closes' '#810).' commit 79a8c98ce8ccbb947105bc2a417127dbc259dced Author: Alan Garny '' Date: Sun Nov 15 14:03:21 2015 +0100 Slight update to the user documentation. commit 59b839f35b551e62a198aa16401799f0fca1c913 Author: Alan Garny '' Date: Sun Nov 15 13:49:31 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7e1144b4d9af5d5a3b66cbbdbe54440553240e8c Author: Alan Garny '' Date: Sun Nov 15 13:44:16 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit 56af7d4d84dcebcd97900ac96cfa11168adf2b9b Author: Alan Garny '' Date: Sun Nov 15 13:40:05 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c637577ec65217ca7bc2cf092c889a0bf0caabbe Author: Alan Garny '' Date: Sun Nov 15 13:35:16 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit c23745972423954feff3d94050c64b8c4a67d279 Author: Alan Garny '' Date: Sun Nov 15 12:46:19 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files '(#808)' '[ci' 'skip].' commit f04b477fc1e435c7b8272bbccc34a631c6e45134 Merge: 018f75f91 a3b17ba18 Author: Alan Garny '' Date: Sat Nov 14 20:07:02 2015 +0100 Merge branch ''\''master'\''' into issue810. commit a3b17ba18606277534c28476f1d0fcb06aff5899 Merge: 5c5609b01 cc380fb6c Author: Alan Garny '' Date: Sat Nov 14 20:03:59 2015 +0100 Merge pull request '#813' from opencor/issue805 New file menus are now always available '(closes' '#805)/' commit cc380fb6c2b76c9b0f25dbfa19edccafd6393347 Author: Alan Garny '' Date: Sat Nov 14 19:36:02 2015 +0100 New file menu should always be available '(#805).' commit 18f705b1b11cfb6ab9cf4d1e8660894931b56765 Author: Alan Garny '' Date: Sat Nov 14 09:58:09 2015 +0100 New file menu should always be available '(#805)' '[ci' 'skip].' commit bbcb94254d5ca9748ab1714d5d1c3a0562b2b167 Author: Alan Garny '' Date: Fri Nov 13 16:58:50 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6f94a4d8ec48066519eebed1a2188e46bd3bc827 Author: Alan Garny '' Date: Fri Nov 13 16:46:36 2015 +0100 New file menu should always be available '(#805)' '[ci' 'skip].' commit 018f75f9146c922decfae5e57612c2609f1a1849 Author: Alan Garny '' Date: Fri Nov 13 15:20:15 2015 +0100 Single Cell view: fixed a problem with file tab icons getting reset '[ci' 'skip].' This used to happen when we had several simulations running with a simulation delay of 1,000,000 '(i.e.' very 'slow)' and then switching from one simulation to another. Every time we would switch to another simulation, the file tab icon of the other simulations would get reset rather than kept as they $'were\342\200\246' commit 7a6f2d7e8c193fe6b4c38749bcf7d5798efa3f5e Author: Alan Garny '' Date: Fri Nov 13 14:11:29 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon '[ci' 'skip].' commit 3d86f4f6cf4722ebef731d37cd2a522b31fb41f8 Author: Alan Garny '' Date: Fri Nov 13 14:07:35 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon '[ci' 'skip].' commit 328489b5ff60d77cc6779546d1742606b1ad5ae0 Author: Alan Garny '' Date: Fri Nov 13 14:07:23 2015 +0100 Single Cell view: slight improvements to the way we handle the resetting of a file tab icon '[ci' 'skip].' commit d2aebbf371be64a42fbe036905f0be2389d12f3b Author: Alan Garny '' Date: Fri Nov 13 13:58:29 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 03a3f014e43a2ca11095b295fedbe09643f2329e Merge: 0147d208f 5c5609b01 Author: Alan Garny '' Date: Fri Nov 13 10:19:29 2015 +0100 Merge branch ''\''master'\''' into issue810. commit 5c5609b01e1a75b0d9e7c54cdb14ad6c347ff81a Author: Alan Garny '' Date: Fri Nov 13 10:07:55 2015 +0100 Some minor fix and cleaning up of scripts/genericmake. commit 4ca0b20a90b642a8839ac7e53d7f30db60634ed3 Author: Alan Garny '' Date: Fri Nov 13 10:06:31 2015 +0100 Some minor fix and cleaning up of scripts/genericmake. commit 0147d208f2c0d5813da394d91eda7d00a00e1319 Merge: d1f23387c 24b80c7be Author: Alan Garny '' Date: Thu Nov 12 17:53:40 2015 +0100 Merge branch ''\''master'\''' into issue810. commit 24b80c7be4f55dc16aa7d5a8a0f5f6cd5555202a Merge: c62779543 f96e96d93 Author: Alan Garny '' Date: Thu Nov 12 17:51:56 2015 +0100 Merge pull request '#811' from opencor/issue808 Single Cell view: only export the relevant simulation data from CellML 1.1 files '(closes' '#808).' commit f96e96d93b63c7d3aba5869c52b3a21f2bad5755 Author: Alan Garny '' Date: Thu Nov 12 17:26:48 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files '(#808).' commit 25314978e00637b30957e736a2fc4618fb5ce282 Author: Alan Garny '' Date: Thu Nov 12 17:21:39 2015 +0100 Single Cell view: some work on only exporting the relevant simulation data from CellML 1.1 files '(#808)' '[ci' 'skip].' commit 3af60ea79f67ebb1bfb897289255ad0052c98f74 Author: Alan Garny '' Date: Thu Nov 12 17:18:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit d1f23387c80f8d6f724eb30d8ba9ffd8a30575b8 Author: Alan Garny '' Date: Thu Nov 12 16:34:23 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit 4f8863d40a734f1da6d13c77e001f859d616d3e7 Author: Alan Garny '' Date: Thu Nov 12 16:20:57 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit fa265c2cd32dcbe57ce5c30f62252103ce8db845 Author: Alan Garny '' Date: Thu Nov 12 14:57:27 2015 +0100 Single Cell view: fixed a problem with commit 5275a1f crashing OpenCOR when a model requires an NLA solver '[ci' 'skip].' commit 28d10b55935a7cd7764c6061d73805334a27228f Author: Alan Garny '' Date: Thu Nov 12 13:41:46 2015 +0100 Single Cell view: fixed a small problem which occurred when having at least one plot and deciding to reload a file. Indeed, doing so would have got the 'parameters'\''' property editor to flicker. This was because of commit 95e1d73, which although good caused that flicker '[ci' 'skip].' commit c05141b8ea7663243bbd9eb2b1c80f64aa4df0cc Merge: 6b5ce0920 c62779543 Author: Alan Garny '' Date: Thu Nov 12 11:16:14 2015 +0100 Merge branch ''\''master'\''' into issue810. commit c62779543925bf6c2ba781d71fc479993c56b94b Author: Alan Garny '' Date: Thu Nov 12 11:16:00 2015 +0100 Shell scripts: some refactoring that makes it much easier to maintain. commit 748b87df9e3e78175047ff230dfcc410925b2d23 Author: Alan Garny '' Date: Thu Nov 12 11:03:14 2015 +0100 Some minor cleaning up '[ci' 'skip]' No need to complicate things for our own $'scripts\342\200\246' commit 6b5ce09200452b8565e24ebe09c7682f0d9eef9e Merge: 9eb44d7d6 ccd4a6246 Author: Alan Garny '' Date: Wed Nov 11 19:35:18 2015 +0100 Merge branch ''\''master'\''' into issue810. commit ccd4a6246e07083112443f6fecb04357c77a3851 Author: Alan Garny '' Date: Wed Nov 11 19:34:11 2015 +0100 Batch files: some refactoring that makes it much easier to maintain '[ci' 'skip].' commit 9eb44d7d63f25066dc06a1fce138978d25167bd4 Author: Alan Garny '' Date: Wed Nov 11 17:26:42 2015 +0100 Single Cell view: some minor improvement '[ci' 'skip].' commit 89302301c1156cd7bd8b26b8ae342c7cd9dae4e8 Author: Alan Garny '' Date: Wed Nov 11 17:21:52 2015 +0100 Single Cell view: some minor improvement '[ci' 'skip].' commit 2af65191e0c52cad6477c61b98ab52428f75a9bb Author: Alan Garny '' Date: Wed Nov 11 16:35:14 2015 +0100 Single Cell view: argh, we actually need to let people know that our data has been 'updated!' Indeed, say that you run a simulation and then reset the model parameters. If we 'don'\''t' let people know that our data has been updated, then the 'parameters'\''' property editor 'doesn'\''t' get updated and we the reset button 'doesn'\''t' get disabled... commit 756d00e01f5bb2049982fda8a24c0577d1caa534 Merge: 5275a1fbf 7a69508e0 Author: Alan Garny '' Date: Wed Nov 11 16:24:21 2015 +0100 Merge from master. commit 7a69508e07e3bc24f48dbd0f5875a475931267ca Author: Alan Garny '' Date: Wed Nov 11 16:18:21 2015 +0100 Slight improvements to our Windows building scripts '[ci' 'skip].' We automatically retrieve the version of Qt so that we 'don'\''t' have to update the scripts every time we use a different version of Qt. commit 5275a1fbf8265dd47f98e6d987baa9551dd5b5c0 Author: Alan Garny '' Date: Wed Nov 11 14:51:45 2015 +0100 Single Cell view: make sure that all the parameter values are computed before populating the 'parameters'\''' property editor '[ci' 'skip].' Indeed, without that, we get to see the 'parameters'\''' property editor with some wrong values, and although 'it'\''s' ''\''only'\''' during a split second, it still looks ''\''bad'\''.' commit e22d884804516f0ad856f328b36e1b48f940dd17 Author: Alan Garny '' Date: Wed Nov 11 12:23:50 2015 +0100 Some minor improvement '[ci' 'skip].' commit 0d582110d72458f8064eee3df5cc5243f0d9147a Author: Alan Garny '' Date: Tue Nov 10 19:14:12 2015 +0100 The refactoring done in 8bd994c was wrong and 'can'\''t,' in fact, be done '[ci' 'skip].' commit 8bd994cc95f59a8279b0c0db55994e64ea3fec49 Author: Alan Garny '' Date: Tue Nov 10 18:30:12 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit f4a1d0b7cb0888626d9807818318fb07f13f6b84 Author: Alan Garny '' Date: Tue Nov 10 18:23:12 2015 +0100 Single Cell view: regression: fixed a problem with changing the NLA solver not having an effect on the model parameters anymore '[ci' 'skip].' This is similar to 92943a9. commit a44a9138df54191a2b8ccd44911db2ceed306724 Author: Alan Garny '' Date: Tue Nov 10 18:17:11 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 2949007d1914800f2cf0fa14e1931dcc1300355f Author: Alan Garny '' Date: Tue Nov 10 17:33:14 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 92943a9e117ff0b5827dcd3d1178fa60f93d8052 Author: Alan Garny '' Date: Tue Nov 10 17:33:03 2015 +0100 Single Cell view: regression: fixed a problem with changing the starting point not having an effect on the model parameters anymore '(e.g.' the variable of 'integration)' '[ci' 'skip].' commit 34da01d00371f022dbf131d774be0fc4824199a0 Author: Alan Garny '' Date: Tue Nov 10 17:18:41 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit c9759685720f01a9512f447e3f4266321f8b6021 Author: Alan Garny '' Date: Tue Nov 10 15:50:56 2015 +0100 Slight improvement '[ci' 'skip].' commit fa68d32727c02f6fbe066e5ff2dbbb36fbe300e6 Author: Alan Garny '' Date: Tue Nov 10 15:50:41 2015 +0100 Some minor cleaning up '[ci' 'skip].' Apparently, we $'don\342\200\231t' need this anymore '(we' tried with and without and we get the same 'results)…' commit 3130b0607e2bf7ccf472a2077d7cbaf3bb34808a Author: Alan Garny '' Date: Tue Nov 10 15:49:27 2015 +0100 Some minor cleaning up and improvement '[ci' 'skip].' commit 95e1d7329611f21e6eb341f795b86e2028d3cfbd Author: Alan Garny '' Date: Tue Nov 10 14:02:22 2015 +0100 Fixed some memory leaks '[ci' 'skip].' commit 808c4a46fedf4030bad8c91b0cfe2216d78270c1 Author: Alan Garny '' Date: Tue Nov 10 11:45:34 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit c47f9a1c057638a29f96c59fca0ed8979011d06e Author: Alan Garny '' Date: Tue Nov 10 11:02:58 2015 +0100 Single Cell view: some work on making the ability to create/update a CellML file from some simulation data an option '(#810)' '[ci' 'skip].' commit 02923e2d19c18078bba24181beeeb601919929c1 Author: Alan Garny '' Date: Mon Nov 9 18:56:29 2015 +0100 Travis CI: the build scales fine on Ubuntu, but not on OS X, so reverting to '"-j' '3".' commit 74d7e4006afcbf89a53672fcfc283b50b91a4849 Author: Alan Garny '' Date: Mon Nov 9 18:34:29 2015 +0100 Travis CI: trying to build using up to 4 concurrent jobs. commit 74dbc6516bc5e0c78acef83c0c205c9ac17e312c Author: Alan Garny '' Date: Mon Nov 9 18:14:08 2015 +0100 Travis CI: trying to build using up to 5 concurrent jobs. commit 0e75c037fe99f141db6f0fabc740ff4511d6991e Author: Alan Garny '' Date: Mon Nov 9 18:13:55 2015 +0100 Travis CI: trying to build using up to 4 concurrent jobs. commit f2efc7edaa85e504cf8c9534db983282dd481caf Author: Alan Garny '' Date: Mon Nov 9 18:13:20 2015 +0100 Travis CI: ninja is definitely a no-go, so back to good old make. Actually, ninja works on Ubuntu using $'\342\200\234-j' $'3\342\200\235,' but not on OS X '(even' with $'\342\200\234-j' '3”).' commit 21d782fa9256438f19d36f3aa002ddc4a0f16b34 Author: Alan Garny '' Date: Mon Nov 9 17:58:44 2015 +0100 Travis CI: trying to use ninja '(again?)' to speed things up. commit 317297be43ddfac690b9bb381e1bce0348c67475 Author: Alan Garny '' Date: Mon Nov 9 17:53:17 2015 +0100 Travis CI: trying to use ninja '(again?)' to speed things up. commit 7e6ae06cdd7f555a6a8ba11cac597529754691ef Author: Alan Garny '' Date: Mon Nov 9 17:37:57 2015 +0100 Travis CI: trying to use ninja '(again?)' to speed things up. commit 5ed9565116046c3f974090056724306e6640dac0 Author: Alan Garny '' Date: Mon Nov 9 17:29:34 2015 +0100 Slight update to the user documentation following our work on issue '#33' '[ci' 'skip].' commit ec3683d8ca4c32491d2e4ea696a49d54dec8d24f Merge: 09f9ce0ce b91c706fc Author: Alan Garny '' Date: Mon Nov 9 17:24:26 2015 +0100 Merge pull request '#809' from opencor/issue33 Single Cell view: can now create a new or update an existing CellML file based on the results of a simulation '(closes' '#33).' commit b91c706fc5becc107dbee0cc41991333b435e769 Author: Alan Garny '' Date: Mon Nov 9 16:58:38 2015 +0100 Some minor cleaning up. commit 76340ac630faf0707e9f9c144189d300a8460ee1 Merge: 575476544 09f9ce0ce Author: Alan Garny '' Date: Mon Nov 9 16:27:44 2015 +0100 Merge branch ''\''master'\''' into issue33. commit 575476544b28f43f53aaeff4d1aa41b4263fd080 Author: Alan Garny '' Date: Mon Nov 9 16:27:38 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 9a894a015e4a11ef4ef7977e6dcdf4fa47e11f25 Author: Alan Garny '' Date: Mon Nov 9 16:24:10 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit d9c9d58a583485fc6f64336a8fdf1574ef18cd7c Author: Alan Garny '' Date: Mon Nov 9 15:42:28 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 8b32e182ff4926668a4271c6ae37ecbcb2d0f2d1 Author: Alan Garny '' Date: Mon Nov 9 15:23:31 2015 +0100 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 09f9ce0ce532cedb777f29ae116e58d13a3aded5 Author: Alan Garny '' Date: Mon Nov 9 14:39:20 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 169dcf32b90ee0484f61d65164c85476016c24e4 Author: Alan Garny '' Date: Mon Nov 9 14:30:41 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 09f1ba159cc0e7c78b4dc2dc6d2cfd390994df06 Author: Alan Garny '' Date: Mon Nov 9 14:06:18 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 03ee6309c32db40ec2f1cb7864177d52147f385c Author: Alan Garny '' Date: Mon Nov 9 13:53:38 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit fb7f1a16460b163cf37653380b91a35bf0544154 Merge: 4ce24428a 4ce3332fe Author: Alan Garny '' Date: Sun Nov 8 14:24:01 2015 +0100 Merge branch ''\''master'\''' into issue33. commit 4ce3332fed67069bd093a6215aeaf81be81c9933 Author: Alan Garny '' Date: Sun Nov 8 14:17:29 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels '(#615).' commit c18a130751e96d92c8ee66ce9de16fecad58718b Author: Alan Garny '' Date: Sun Nov 8 14:00:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 65b7ce25952b5cfaf044bcf42d1ecb05d9eb76ca Merge: 0656d9f56 7fb4c6051 Author: Alan Garny '' Date: Sun Nov 8 13:50:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0656d9f56a7d12dce35d98d6e92b0aa773c03a49 Author: Alan Garny '' Date: Sun Nov 8 12:36:51 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels '(#615).' We now seem to be properly handling the addition/removal of graph panels properly. 'It'\''s' just that there is still a bit of flickering in some cases. commit 8d8b16e884e7bf3c8e9349f3e2689336ca016419 Author: Alan Garny '' Date: Sat Nov 7 15:04:49 2015 +0100 Single Cell view: some further work on the X-axis not always lining up when using multiple graph panels '(#615).' We were not handling the addition/removal of graph panels properly. Now, things are better, but still not quite how they should be... commit 7fb4c60513def9fea203afc413725ce04feb8fad Author: Alan Garny '' Date: Sat Nov 7 15:04:49 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 4ce24428a2c1a22be1ddebb14f144bbdcad402cd Merge: aed259b9c b8b97cc3d Author: Alan Garny '' Date: Sat Nov 7 14:18:28 2015 +0100 Merge branch ''\''master'\''' into issue33. commit b8b97cc3de58b45e4c750427c9c01b0bf5ad19fb Merge: 37ccec28e 301a755ca Author: Alan Garny '' Date: Sat Nov 7 14:13:37 2015 +0100 Merge pull request '#807' from opencor/issue615 Single Cell view: X-axis now always line up when using multiple graph panels '(closes' '#615).' commit 301a755ca68a88962197ab879e31754c4826bf62 Author: Alan Garny '' Date: Sat Nov 7 13:25:11 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615).' commit d72478eee96a6dfe7bb161e25d03b91e46d8a997 Author: Alan Garny '' Date: Fri Nov 6 20:45:14 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit 900a92fd2c3c4a84f059903707b4a9f46602f54c Author: Alan Garny '' Date: Fri Nov 6 20:33:48 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit 92a39d05945bc948abcde224369ee66af5d0596a Author: Alan Garny '' Date: Fri Nov 6 18:02:55 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit cc27dfb65ed83a062ae3a8774c9349ecc10c29fb Author: Alan Garny '' Date: Fri Nov 6 17:47:25 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit 5203a4499f4d653ef817696404c919cd884d019f Author: Alan Garny '' Date: Fri Nov 6 17:35:17 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit f3dca627cff5ed9bf61665498d70f92eccec8caa Author: Alan Garny '' Date: Fri Nov 6 17:24:18 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit 48bcb84ae2b17190e735aff42e69a420feca4fb8 Author: Alan Garny '' Date: Fri Nov 6 17:05:18 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit e78a9b824258008403ad03877da3e35e8b9ca0d5 Author: Alan Garny '' Date: Fri Nov 6 16:05:06 2015 +0100 Single Cell view: some work on the X-axis not always lining up when using multiple graph panels '(#615)' '[ci' 'skip].' commit aed259b9c6c5c063c6939fed2c523d5265129f63 Merge: 39f84b546 37ccec28e Author: Alan Garny '' Date: Fri Nov 6 15:36:09 2015 +0100 Merge branch ''\''master'\''' into issue33. commit 37ccec28eb06d670ea619a489145d30c9c0ad500 Merge: 00fec650b 22b08b18d Author: Alan Garny '' Date: Fri Nov 6 15:31:08 2015 +0100 Merge pull request '#806' from opencor/issue568 Single Cell view: now respect '(CellML' '1.1)' model modularity '(closes' '#568).' commit 22b08b18d064a08c7d16a79814c2b2e467c10bff Author: Alan Garny '' Date: Fri Nov 6 15:06:08 2015 +0100 Single Cell view: some work towards respecting model modularity '(#568).' commit 44fdeaf1c2dc91fa059e5c75e2a6a253d31cacf3 Author: Alan Garny '' Date: Fri Nov 6 14:51:05 2015 +0100 Single Cell view: some work towards respecting model modularity '(#568)' '[ci' 'skip].' commit ed5ecd64440acdc5b4fbfa9e851cc55c0a9df5ed Author: Alan Garny '' Date: Thu Nov 5 13:54:17 2015 +0100 Single Cell view: some work towards respecting model modularity '(#568)' '[ci' 'skip].' commit c116b3374e092ae94a435c8d53f02e3b21c96921 Author: Alan Garny '' Date: Wed Nov 4 14:48:05 2015 +0100 Single Cell view: some work towards respecting model modularity '(#568)' '[ci' 'skip].' commit 00fec650b8b5f76c7465b891eaa40884bda3e838 Author: Alan Garny '' Date: Wed Nov 4 14:33:13 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 44e5f7030acdc2502a39b5cb76efd91bf7c4bddd Author: Alan Garny '' Date: Wed Nov 4 14:22:40 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 96508df3ce6b2cb43fd66cec6ead417e72e35d7d Author: Alan Garny '' Date: Wed Nov 4 11:54:54 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 39f84b54662d7821b75995ea0b3009fed368202d Merge: a75922547 00c42a70a Author: Alan Garny '' Date: Tue Nov 3 21:37:00 2015 +0100 Merge branch ''\''master'\''' into issue33. commit 00c42a70a7e411110582def6dd6cde4a0b088a92 Merge: f626f345d 5c289e443 Author: Alan Garny '' Date: Tue Nov 3 20:39:49 2015 +0100 Merge pull request '#804' from opencor/issue803 Now allow one or several CLI versions of OpenCOR to run along the GUI version '(closes' '#803).' commit 5c289e443a96cef1de83dd8d0907b3d304737ef5 Merge: f6b9dac20 f626f345d Author: Alan Garny '' Date: Tue Nov 3 19:41:32 2015 +0100 Merge branch ''\''master'\''' into issue803. commit f626f345dd2782e7d3001bbd5114b09afffec3ef Author: Alan Garny '' Date: Tue Nov 3 19:41:14 2015 +0100 Travis CI: apparently, make sure that we can download CMake on Linux even if their certificate is not ''\''valid'\''.' commit f6b9dac200c00024e8d4a7053f1f01aca72cb9ae Author: Alan Garny '' Date: Tue Nov 3 19:21:59 2015 +0100 Some work on allowing one or several CLI versions of OpenCOR to run along the GUI version '(#803).' commit b9e82ecbe5bf935bb67ea5f4150b3f8d0278cf40 Author: Alan Garny '' Date: Tue Nov 3 18:58:47 2015 +0100 Some minor cleaning up '[ci' 'skip].' Simplified our use of 'QString::toUtf8().' commit ac531f7b90ed71533b6cf7e8603d224efd590064 Author: Alan Garny '' Date: Mon Nov 2 19:54:17 2015 +0100 Some minor cleaning up '[ci' 'skip].' Well, the previous commit made things slightly worse on Windows and Linux '(the' organisation name is actually needed on 'both),' so going back to what we used to have $'initially\342\200\246' and thus not breaking the settings with previous versions of $'OpenCOR\342\200\246' commit a8128d52dd1235cffe3e42c9639125f646d92621 Author: Alan Garny '' Date: Mon Nov 2 19:46:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 5f4156d6501ddb3422b162a803840aac99c3ff43 Author: Alan Garny '' Date: Mon Nov 2 19:43:14 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 8619aa415aee363cac642b9fd5f010a2c3b25876 Author: Alan Garny '' Date: Mon Nov 2 19:40:34 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 409aed9659ef39b26769413adbe4ecf05cdc898a Author: Alan Garny '' Date: Mon Nov 2 19:30:05 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6945248eaf468f921829e480789266085edc448d Author: Alan Garny '' Date: Mon Nov 2 18:43:02 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit d2481cf744fda0aeceb350d181f63fe5c6e52c17 Author: Alan Garny '' Date: Mon Nov 2 17:52:13 2015 +0100 Some work on allowing one or several CLI versions of OpenCOR to run along the GUI version '(#803)' '[ci' 'skip].' commit a1849c72a1cd9256f51dac1077e7e7eccd95026c Author: Alan Garny '' Date: Mon Nov 2 16:34:35 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 454cbc5ee4000d931f2da1ccfc9c92170c30f057 Author: Alan Garny '' Date: Mon Nov 2 11:19:18 2015 +0100 Travis CI: apparently, we Homebrew now silences curl, so testing... commit f1404d25a7c93c004256aa9c661b4d7236d05d66 Author: Alan Garny '' Date: Fri Oct 30 11:23:16 2015 +0100 Cleaned up our use of the application object '[ci' 'skip].' As soon as we create an application object, we can refer to it using qApp, so now we do that wherever possible. commit b8fcaa6eb587e68c468b1817a29f38228885922a Author: Alan Garny '' Date: Fri Oct 30 11:01:59 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6625e775ff9216f0e8506d4fbeebcd89194a52cf Author: Alan Garny '' Date: Fri Oct 30 10:28:05 2015 +0100 Cleaned up the code that describes the application and gives its build information '[ci' 'skip].' commit d9c3bab9cddf09d5eea6a965845f28de8fccff97 Author: Alan Garny '' Date: Fri Oct 30 10:25:48 2015 +0100 Cleaned up the code that describes the application and gives its build information '[ci' 'skip].' commit f52cfcc05cecdfc8bb4b45d9ffe40665c6e79c8d Author: Alan Garny '' Date: Thu Oct 29 20:04:25 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale '[ci' 'skip].' commit a097ef6f09324671188d1e0ad9871cd99a45a3e3 Author: Alan Garny '' Date: Thu Oct 29 19:28:14 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale '[ci' 'skip].' commit 7c1ea3978c132ba1cdd27d4ccfb9de781d3a72aa Author: Alan Garny '' Date: Thu Oct 29 19:10:56 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale '[ci' 'skip].' commit 6bd36ef5816964eb2b9101aeb1bb6cd504a9aee0 Author: Alan Garny '' Date: Thu Oct 29 18:39:03 2015 +0100 Some minor cleaning up with regards to setting/retrieving the locale '[ci' 'skip].' commit f06f48b47f6c5427ec6e1ebb541b7e7eaa021dcd Author: Alan Garny '' Date: Thu Oct 29 18:23:04 2015 +0100 Simplified our setting/retrieval of the active directory. Some additional minor cleaning up too '[ci' 'skip].' commit 19cd5610d2a6fead353a856eb8a6e929f27a8715 Author: Alan Garny '' Date: Thu Oct 29 17:01:19 2015 +0100 Slight changes to the About box '[ci' 'skip].' commit dca391515d43df1aba5cfc594056a94ce691a1af Author: Alan Garny '' Date: Thu Oct 29 16:49:13 2015 +0100 Slight changes to the CLI version of the About ''\''box'\''' '[ci' 'skip].' commit 1d8ec627fe94f5ef081ba4b442f78d2f20f0d96e Author: Alan Garny '' Date: Thu Oct 29 16:45:43 2015 +0100 Slight changes to the About box '[ci' 'skip].' commit 402ad9a7a0e54e445304fd15fdadab9ef20460ed Author: Alan Garny '' Date: Thu Oct 29 16:40:51 2015 +0100 Slight changes to the About box '[ci' 'skip].' commit 7801d4f59e6c5f3b63c5ac18786c10bb6cd45717 Author: Alan Garny '' Date: Wed Oct 28 20:46:31 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 30d126e3ee584cee01e926de93cbc32d91e26cf9 Author: Alan Garny '' Date: Wed Oct 28 15:58:14 2015 +0100 SBML API: enable/disable a warning on Windows '[ci' 'skip].' This is required to get things to work using Qt 5.5 '(although' we $'don\342\200\231t' yet want to use that version of Qt since $'it\342\200\231s' causing us problems on OS 'X).' commit 7f68aa0c8fef2321bd30a252b7b2893d182051af Author: Alan Garny '' Date: Wed Oct 28 15:50:34 2015 +0100 SBML API: enable/disable a warning on Windows '[ci' 'skip].' This is required to get things to work using Qt 5.5 '(although' we $'don\342\200\231t' yet want to use that version of Qt since $'it\342\200\231s' causing us problems on OS 'X).' commit e08388116966261d4d91db5cab95ab0cc5d4f880 Author: Alan Garny '' Date: Wed Oct 28 14:55:59 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 32d75bc00d32e2f405dad45530df91d9782e7290 Author: Alan Garny '' Date: Wed Oct 28 11:28:10 2015 +0100 CellML support: removed the comments generated by the CellML API '[ci' 'skip].' This makes it easier to read the code when we need/want to check the code generated by the CellML $'API\342\200\246' commit a75922547520d7163d6e2b2abe1a17a7582083ff Merge: 850b0373b e2109c30d Author: Alan Garny '' Date: Wed Oct 28 10:16:24 2015 +0100 Merge branch ''\''master'\''' into issue33. commit e2109c30defb36727aed3a5aae12529714a57be6 Merge: 83e03b234 594173f66 Author: Alan Garny '' Date: Wed Oct 28 10:14:44 2015 +0100 Merge pull request '#802' from opencor/issue790 CellML Text view: added support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(closes' '#790).' commit 594173f66098da3c2ec0694e369622b835c232a4 Author: Alan Garny '' Date: Wed Oct 28 09:46:11 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790).' commit 9b927b5485ad8c94f2fab70851a7ae2ce11998a9 Author: Alan Garny '' Date: Wed Oct 28 09:33:20 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit 38726d3e7ad9e99064de3f3241bfec8516b94b37 Author: Alan Garny '' Date: Tue Oct 27 19:46:29 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit e1bdb24a095d5bb75a3da606f8cf1464b87bd7d0 Author: Alan Garny '' Date: Tue Oct 27 19:45:38 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit 46145f77e1a744f16752c455577ac5cfbbe8a96f Author: Alan Garny '' Date: Tue Oct 27 19:30:39 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit 9b1b4b225fb85f9092da1ff9051dfaf8f5e5a6bf Author: Alan Garny '' Date: Tue Oct 27 19:25:12 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit e585cb6b3d2c373baf963ed986615a8971f79474 Author: Alan Garny '' Date: Tue Oct 27 19:13:26 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit b6217c06ee56fd330c49f009e41aee19b8fe6279 Author: Alan Garny '' Date: Tue Oct 27 19:11:58 2015 +0100 CellML Text view: some work on adding support for 'gcd(a,' b, '...)' and 'lcm(a,' b, '...)' '(#790)' '[ci' 'skip].' commit 83e03b234833c041ee82e373a7cd47c704c2645c Merge: 060b8b4c4 7568db025 Author: Alan Garny '' Date: Tue Oct 27 17:34:12 2015 +0100 Merge pull request '#801' from opencor/issue789 CellML Text view: added support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(closes' '#789).' commit 7568db025fd0894327e6fbfdecfdec4fb901834d Author: Alan Garny '' Date: Tue Oct 27 17:06:51 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789).' commit 511d8fdd574af301bf220deb12bfa744a65a8fb4 Author: Alan Garny '' Date: Tue Oct 27 16:47:58 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 012481908a51ad07c43f25ff139c541b13159f83 Author: Alan Garny '' Date: Tue Oct 27 16:36:59 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit d6e9e222dca82b192a8c37022a45b8ef7562f18b Author: Alan Garny '' Date: Tue Oct 27 16:34:29 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit c0ac552fd36ccf6966344e9927c3c33b36e8a706 Author: Alan Garny '' Date: Tue Oct 27 16:26:00 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 74545f8dc61d73baee3df15c7f2338e632ef5ada Author: Alan Garny '' Date: Tue Oct 27 16:09:39 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 861a436d006f4a96a43cbfd000bcbe525494e2d4 Author: Alan Garny '' Date: Tue Oct 27 15:22:59 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 24d7d7d8cb50c12506b54ae14f868488c6ea106d Author: Alan Garny '' Date: Tue Oct 27 15:16:08 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 4ec235641dd55953d3fd3298826bd7a28dfc3fb8 Author: Alan Garny '' Date: Tue Oct 27 15:12:35 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit f068a0f68b9873a116731c84546e682613c921e1 Author: Alan Garny '' Date: Tue Oct 27 11:38:50 2015 +0100 CellML Text view: some work on adding support for 'min(a,' b, '...)' and 'max(a,' b, '...)' '(#789)' '[ci' 'skip].' commit 060b8b4c49088e6fed7933de4ed21869c45a57ab Author: Alan Garny '' Date: Tue Oct 27 11:31:36 2015 +0100 Added proper support for some trigonometric operators. On http://opencor.ws/user/plugins/editing/CellMLTextView.html, we list the '[a]sec[h](),' '[a]csc[h]()' and '[a]cot[h]()' functions as being available, but although we can make use of them in the CellML editors, we $'can\342\200\231t' actually use them in the Single Cell view. commit 5aaf3f61b492b330a81dce1d2d36bbd7e8d55ae6 Author: Alan Garny '' Date: Tue Oct 27 11:17:49 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit fa089a7e28c1f6ff2dc85d4c8ce33874a2420637 Author: Alan Garny '' Date: Tue Oct 27 10:58:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 850b0373be56c4818d9fa7d2e8ed64ddde7b4e86 Merge: 668a8b9b3 05c490f20 Author: Alan Garny '' Date: Mon Oct 26 19:23:05 2015 +0100 Merge branch ''\''master'\''' into issue33. commit 05c490f20d3c7e4ee2fa63f1a03b4e13ff3d8cb4 Merge: 6aa808d36 48fb87dbd Author: Alan Garny '' Date: Mon Oct 26 19:22:42 2015 +0100 Merge pull request '#800' from opencor/issue797 Viewer widget: greatly improved the rendering of various operators '(closes' '#797).' commit 48fb87dbd7e1b83107bab4ad691574c98c95a1f2 Author: Alan Garny '' Date: Mon Oct 26 18:57:32 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797).' commit b1467d4fb188a363a643b154ee3823721880dc3f Author: Alan Garny '' Date: Mon Oct 26 18:45:13 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 142b372d9e46afe2c052d911e8ac59c27588de91 Author: Alan Garny '' Date: Mon Oct 26 18:43:18 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 7387a9ce1deef79edb188c118192920b6b176d27 Author: Alan Garny '' Date: Mon Oct 26 18:31:12 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797).' commit 3e98494751fe2dc67e95d3d4d0faf821ae4171cb Author: Alan Garny '' Date: Mon Oct 26 18:23:25 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797).' commit fad11910f3ed7d79cd0f11616e0bd68232a18e58 Author: Alan Garny '' Date: Mon Oct 26 17:41:33 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797).' commit 5e419e31ae88fb0a0fd50c52263b785f761c4773 Author: Alan Garny '' Date: Mon Oct 26 16:05:12 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797).' commit ff29fb3dae6b30a30b4906111016b0f273f26254 Author: Alan Garny '' Date: Mon Oct 26 14:01:38 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit f4729c8042724dbe6abc63bbf7ab8acb330123a5 Author: Alan Garny '' Date: Mon Oct 26 14:01:29 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit e9f8efb9659b9216e95e7ecddade9bdea755313a Author: Alan Garny '' Date: Mon Oct 26 13:19:37 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit bafc783681edea8b3adfc7b2188a1a00ff404e8b Author: Alan Garny '' Date: Mon Oct 26 13:19:30 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 50a925c9642b7d2cf45dcb9984165bdf713cc57b Author: Alan Garny '' Date: Mon Oct 26 13:13:26 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 3bb62ff372ea57aeeb456b8c7d755256bf0f206a Author: Alan Garny '' Date: Mon Oct 26 13:13:14 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 7db5a745af3f3a527665aff55b6de974c23b085d Author: Alan Garny '' Date: Mon Oct 26 11:58:39 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 8cab6fb32b03e534feae97c790652dd917d2d235 Author: Alan Garny '' Date: Mon Oct 26 10:00:56 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit c889da577a1753cd10e3cffa81c387f55f45c723 Author: Alan Garny '' Date: Mon Oct 26 09:51:43 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 485ec9de9dd0250d241d6d17b48acac169a8e8f0 Author: Alan Garny '' Date: Mon Oct 26 09:42:40 2015 +0100 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 6aa808d36fba05e18e58e82d17aae29abdddaf58 Author: Alan Garny '' Date: Sun Oct 25 10:27:25 2015 +0100 Border colour: changed the way we ''\''retrieve'\''' the border colour since it caused problems on Windows 10 '[ci' 'skip].' commit 70523419e0a0f449ad52a7c44f06d77556883eb1 Author: Alan Garny '' Date: Sun Oct 25 10:04:19 2015 +0100 Border colour: changed the way we ''\''retrieve'\''' the border colour since it caused problems on Windows 10 '[ci' 'skip].' commit 84eebc3d47229be663380a6e90c26684a9a92053 Merge: 69bb301df 538e94a72 Author: Alan Garny '' Date: Sat Oct 24 19:54:50 2015 +0200 Merge branch ''\''master'\''' into issue797 '[ci' 'skip].' commit 668a8b9b31ea7f91f62a548c146bf94903a0b652 Merge: 0e2c52b45 538e94a72 Author: Alan Garny '' Date: Sat Oct 24 19:53:58 2015 +0200 Merge branch ''\''master'\''' into issue33 '[ci' 'skip].' commit 538e94a720a9b78a442a351c098ccc7a400fde40 Merge: cc0416d41 5a4180529 Author: Alan Garny '' Date: Sat Oct 24 19:50:22 2015 +0200 Merge pull request '#799' from opencor/issue798 QScintilla: upgraded to version 2.9.1 '(closes' '#798).' commit 5a418052995e75d2df1385274b5fa8dcaad6da69 Author: Alan Garny '' Date: Sat Oct 24 19:26:39 2015 +0200 QScintilla: some work on upgrading to version 2.9.1 '(#798).' commit 76f454de13baeffdbf8c5b2a1ebc9cab284a4f3c Author: Alan Garny '' Date: Sat Oct 24 19:04:07 2015 +0200 QScintilla: some work on upgrading to version 2.9.1 '(#798)' '[ci' 'skip].' commit cc0416d4152ac197b159938304bd139e4816e27f Author: Alan Garny '' Date: Fri Oct 23 21:36:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 69bb301dfd5fe562827e2efda62b2386d6ba5606 Author: Alan Garny '' Date: Fri Oct 23 18:07:03 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 4de7183bd755d9636798ca032efb054f6e53d38d Author: Alan Garny '' Date: Fri Oct 23 17:47:53 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit e426734b75880f1d225c37453565a99cad21b18f Author: Alan Garny '' Date: Fri Oct 23 17:47:00 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit d5e2a5cacd4906702a0c3a972ac52887a711790a Author: Alan Garny '' Date: Fri Oct 23 17:43:47 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit f28a38623dea115cde87da137783a56d1d6c4b3e Author: Alan Garny '' Date: Fri Oct 23 17:34:42 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit b052fade53ac97826b2ec314dee12af2bbd071cc Author: Alan Garny '' Date: Fri Oct 23 16:49:27 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 1066fc5c266fc209bed28bdb019e4a7967a68226 Author: Alan Garny '' Date: Fri Oct 23 16:45:44 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 9c3a2ed53672c2e8822686fa640dfb4bf7d20e6a Author: Alan Garny '' Date: Fri Oct 23 14:50:50 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit dd64feff27125606b2dfc3af905e5d20e8e9543e Author: Alan Garny '' Date: Fri Oct 23 14:50:14 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 834a3dbfdeb135ad634a20289ce023d4e746b156 Author: Alan Garny '' Date: Fri Oct 23 14:42:03 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit d42924459643fb6e2dcb40efa9123f053b72a783 Author: Alan Garny '' Date: Fri Oct 23 14:29:33 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 7cef098c249d597ab3b3c398b021340377993662 Author: Alan Garny '' Date: Fri Oct 23 13:34:31 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit e92f065da8e111ec8962ffafdca54674c1c5c7fd Author: Alan Garny '' Date: Fri Oct 23 13:31:02 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit d080897f6b3043088cf513dc9dc4b76fa0fc185e Author: Alan Garny '' Date: Fri Oct 23 13:09:00 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 7b072db178bcfbe33aeecd01d1a98f3ad3392fdd Author: Alan Garny '' Date: Fri Oct 23 10:56:06 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit f8e9bd966d162e432809931c81965cb8b71ff7f5 Author: Alan Garny '' Date: Fri Oct 23 10:05:29 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 22cc7e86ca8c312a7402a54b067ba37827945c9a Author: Alan Garny '' Date: Fri Oct 23 09:37:07 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 7ffa01f247aa25b07cc711a4e4426ede5d513863 Author: Alan Garny '' Date: Thu Oct 22 19:43:35 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit e947094757c91545a783c3a10cc32fac298f6f96 Author: Alan Garny '' Date: Thu Oct 22 19:36:18 2015 +0200 Viewer widget: some work on improving the rendering of various operators '(#797)' '[ci' 'skip].' commit 5253ffd0cc9fbe8b7f1c9c625ef3ea788db29ba9 Author: Alan Garny '' Date: Thu Oct 22 19:14:15 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit 06a0a15134a04a5b57b85f0303ab368bf485b3cc Author: Alan Garny '' Date: Thu Oct 22 18:36:08 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit cd40ece760dd0e5cbbeee2b6b36e173f3a1a4e63 Author: Alan Garny '' Date: Thu Oct 22 18:29:41 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit b498b9d958d0dfd04ecb97c11cac1d23d6ba05c5 Author: Alan Garny '' Date: Thu Oct 22 18:21:33 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit 34e50a3e6077bf65816d39a7c26c857a80845c97 Author: Alan Garny '' Date: Thu Oct 22 18:18:54 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit 04ef558bef3709efa4914260275798135966b0b5 Author: Alan Garny '' Date: Thu Oct 22 18:16:48 2015 +0200 Viewer widget: some work on improving the rendering of the 'pow(),' 'root()' and 'log()' functions '(#797)' '[ci' 'skip].' commit 38abf9ba4a62393d58bf1a2d40bb299fbe5a2367 Author: Alan Garny '' Date: Thu Oct 22 17:49:41 2015 +0200 CellML Text view: added some additional parsing tests for the 'pow(),' 'root()' and 'rem()' function. commit f5d63d3af45e0ef8c441eb2436c2e49d80092f89 Author: Alan Garny '' Date: Thu Oct 22 17:48:47 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit db8e388097c0e24bfb739a5e9da07ad3ebd11fca Author: Alan Garny '' Date: Thu Oct 22 17:40:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e45bcf59bcfcbd4adab523413708e84c51460479 Author: Alan Garny '' Date: Thu Oct 22 17:38:54 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fbd1516d18435bd6c5c8d6a0a0ccc3ddf288196c Author: Alan Garny '' Date: Thu Oct 22 14:16:10 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit b68592fe876ff12ecd081cca43176fcd0fa917ae Author: Alan Garny '' Date: Thu Oct 22 13:17:28 2015 +0200 CellML: improved the support for arbitrary logarithm '(closes' '#791).' commit 3f174502a04a45f849d41ac9ba9bce8d974db62d Author: Alan Garny '' Date: Thu Oct 22 13:04:52 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 0e2c52b450c2888d757390266f25eefc6f334003 Author: Alan Garny '' Date: Wed Oct 21 18:02:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 51d116824af83c30c9bec22e7852c9b5f7df0eda Merge: b0672bf4e fca3d4fe2 Author: Alan Garny '' Date: Wed Oct 21 17:04:26 2015 +0200 Merge branch ''\''master'\''' into issue33. commit fca3d4fe277b9121e9cbc688fa7f526732b5f7fe Merge: 1b8a6e6fc 37c5f4704 Author: Alan Garny '' Date: Wed Oct 21 17:01:40 2015 +0200 Merge pull request '#796' from opencor/issue795 Viewer widget: improved the rendering of unary minus '(closes' '#795).' commit 37c5f47041dc916b540489f65acee0dab85234ef Author: Alan Garny '' Date: Wed Oct 21 16:22:44 2015 +0200 Viewer widget: improve the rendering of unary minus '(#795).' commit f64e03a5fbb9bb5b393ce5c9c323cadeaeb4645a Author: Alan Garny '' Date: Wed Oct 21 16:21:29 2015 +0200 Viewer widget: improve the rendering of unary minus '(#795).' commit b0ff3c92ebf036ed9f06a04fa4d0c3dc86981a5c Author: Alan Garny '' Date: Wed Oct 21 16:07:21 2015 +0200 Viewer widget: improve the rendering of unary minus '(#795)' '[ci' 'skip].' commit b0672bf4edb406c06aafd0c804c6efd21bf04eda Author: Alan Garny '' Date: Wed Oct 21 13:50:53 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 9b151394d5470d4746ba32d80e0ed1a43c9d97aa Merge: 7777b7e3d 1b8a6e6fc Author: Alan Garny '' Date: Wed Oct 21 13:19:32 2015 +0200 Merge branch ''\''master'\''' into issue33. commit 1b8a6e6fc561a191b913554bad0189f9aabd2888 Merge: e582778e3 be803b1bc Author: Alan Garny '' Date: Wed Oct 21 13:04:14 2015 +0200 Merge pull request '#794' from opencor/issue793 Content to Presentation MathML conversion: improved the merging of mrow elements '(closes' '#793).' commit be803b1bc29659d53752e9aacbc3afe81e6cda2a Author: Alan Garny '' Date: Wed Oct 21 11:42:43 2015 +0200 Content to Presentation MathML conversion: improved the merging of mrow elements '(#793).' commit e582778e3e6f8bf72ec31ff948fc61ff96583352 Author: Alan Garny '' Date: Tue Oct 20 19:53:54 2015 +0200 Some minor cleaning up '[ci' 'skip].' Windows apparently needs WebKit to be specified, not to mention that the CLI version of OpenCOR '(on' 'Windows)' we need to link to the Network module '(rather' than the Xml and XmlPatterns 'ones).' commit ad78ad6be6d5ebf638bf21e2843a699326dddee0 Author: Alan Garny '' Date: Tue Oct 20 19:25:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5acb9c0e47cad6c13dab2d776edd1c1276a7d5e7 Merge: 18f1772f8 999e471fd Author: Alan Garny '' Date: Tue Oct 20 18:57:12 2015 +0200 Merge pull request '#792' from opencor/issue785 Content to Presentation MathML conversion: added some tests '(closes' '#785).' commit 999e471fd70c4bcdb2c58ead5cb69cf5d0350d4f Author: Alan Garny '' Date: Tue Oct 20 18:32:09 2015 +0200 'Don'\''t' rely on D-Bus anymore. Indeed, Homebrew ships Qt 5.5.1 without D-Bus support anymore '(by' default at 'least)' and as it happens OpenCOR $'doesn\342\200\231t' need D-Bus '(anymore?),' $'so\342\200\246' commit c0b9a64cde4da367b45dda821e63c9633e7621b1 Merge: 7d2f2435c 18f1772f8 Author: Alan Garny '' Date: Tue Oct 20 17:51:14 2015 +0200 Merge branch ''\''master'\''' into issue785. commit 7d2f2435c29234a904b6111337ca0793dcbb7267 Author: Alan Garny '' Date: Tue Oct 20 17:50:53 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 6d3f6ab0b6bde2e6b2f2d5a1650f00a21e05c9e7 Author: Alan Garny '' Date: Tue Oct 20 17:49:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 6246fabf43d367da79fa2e645fbceaf7a9ba2c11 Author: Alan Garny '' Date: Tue Oct 20 17:26:06 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' This effectively addresses issue '#784' '(among' other 'things).' commit aa5d0a93251e3beb04e5cfea5e66d5ac7b971bfe Author: Alan Garny '' Date: Tue Oct 20 14:37:28 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit a515936f51b2276642d6cce4694db82adaef0a0e Author: Alan Garny '' Date: Tue Oct 20 14:14:13 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 51de3aaa01cc4b676766bd94640b6d922c728e1b Author: Alan Garny '' Date: Tue Oct 20 14:06:05 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 4d57761ca971991b30e77beb68b292d05de10656 Author: Alan Garny '' Date: Tue Oct 20 14:03:45 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit bd15abd261d8ab6250dceb296da285d5f55fc511 Author: Alan Garny '' Date: Tue Oct 20 13:48:43 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit a95da731ea7ac59ecbad4d4ddd5ad5d1897de858 Author: Alan Garny '' Date: Tue Oct 20 13:34:08 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 39cb4ff892ce4f994db0e28f2d89b0d35f86b551 Author: Alan Garny '' Date: Tue Oct 20 11:30:48 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 6d621e5b7bbd0e452d3ab5aab07253b3ae50e437 Author: Alan Garny '' Date: Tue Oct 20 11:26:19 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit fc4ec27fe25e0af9729ee9f75afcf2e521616f25 Author: Alan Garny '' Date: Tue Oct 20 11:21:38 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit ccf929c00fd03b131b7126f31a37afecbeef403d Author: Alan Garny '' Date: Tue Oct 20 11:16:21 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit f09b1c9b6d5d750e22c2d859d157cd59d9793c3c Author: Alan Garny '' Date: Tue Oct 20 11:03:20 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 62d4b6d70117f704a59a79763101655087b9c4b7 Author: Alan Garny '' Date: Tue Oct 20 10:53:56 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 4fb35b24eb7ae0201ef1c97c1f6c1465868f6b93 Author: Alan Garny '' Date: Tue Oct 20 10:31:40 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit bd37f3d29ba603a78b1e2feb95d0e937943231cf Author: Alan Garny '' Date: Tue Oct 20 10:26:16 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit ff93c0a000a97c2e262d6f61d3fe1e9d6e86aad4 Author: Alan Garny '' Date: Tue Oct 20 10:20:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 9ede544f983267dac80461d7039b6ed5ebc08c0a Author: Alan Garny '' Date: Tue Oct 20 10:07:46 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit df1d8197224c366ce43ad329a200ea9ca3abb40c Author: Alan Garny '' Date: Mon Oct 19 20:10:18 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 7f74804f173906ed800069d52b2f96469061da44 Author: Alan Garny '' Date: Mon Oct 19 19:46:28 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit dff4ed38ff8f8105840a0af637159f08ff51f63b Author: Alan Garny '' Date: Mon Oct 19 19:45:55 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 5e7c6e54edb8a5476f29c3cc399ff21dd8258a9d Author: Alan Garny '' Date: Mon Oct 19 17:35:27 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 63212548560b405056f1f9c19b2cfa153a3088a0 Author: Alan Garny '' Date: Mon Oct 19 16:33:51 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit ee9c8ca68f7cd4ea56b328d8b441e9285a3deb88 Author: Alan Garny '' Date: Mon Oct 19 15:54:14 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit e92fe39e375a28d37ad8ae614ff1885031b4205a Author: Alan Garny '' Date: Mon Oct 19 14:58:55 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 661c7c25a5a5ca279a1c3e56bb0c8afce59ef819 Author: Alan Garny '' Date: Mon Oct 19 14:58:01 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 94f081e5da9b632d354a930e3a4e502c0cb9e52f Author: Alan Garny '' Date: Mon Oct 19 14:42:00 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 18f1772f89152c7e71ab9031e97da90607512af9 Author: Alan Garny '' Date: Sat Oct 17 16:16:13 2015 +0200 Windows 10: make sure that the main window makes use of the screen estate '(closes' '#788).' commit fc019d51f89a38a3b53ab442978f896f20ed52d3 Author: Alan Garny '' Date: Fri Oct 16 17:07:57 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 '[ci' 'skip].' Some tests for the plus operator. Note, however, that some outputs are not quite right, e.g. plus05 '(it' contains some divide 'elements).' commit 776997f13068b88bb129b0af36f2d3a90f39cd0f Author: Alan Garny '' Date: Fri Oct 16 16:36:11 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 '[ci' 'skip].' commit 12d2f40d655d40b372eed7641475b7cefe00ad5d Author: Alan Garny '' Date: Fri Oct 16 14:06:38 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 '[ci' 'skip].' commit 11abd84ad90cd9171115abe678286a6060a0bdb4 Author: Alan Garny '' Date: Fri Oct 16 13:39:48 2015 +0200 Content to Presentation MathML conversion: the XSL file apparently requires support for XSLT 2.0 '[ci' 'skip].' commit dbe834bfe49a079f4061ecb8b245d01f6066debf Author: Alan Garny '' Date: Thu Oct 15 13:41:58 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 0ce8370873c428052ad88effedbda49f1ab6ab59 Author: Alan Garny '' Date: Thu Oct 15 13:14:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8142d63f03d672398a4af8bca5bbdcca49d0ecbb Merge: a60628aff ff90bfe0f Author: Alan Garny '' Date: Wed Oct 14 19:41:53 2015 +0200 Merge branch ''\''master'\''' into issue785. commit ff90bfe0f4335e638ace24f50c499f749d03d861 Author: Alan Garny '' Date: Wed Oct 14 19:34:51 2015 +0200 Some minor refactoring '[ci' 'skip].' commit a60628aff09659e0da4f166dca649b68e4c1c05b Author: Alan Garny '' Date: Wed Oct 14 19:24:10 2015 +0200 Content to Presentation MathML conversion: some work on adding some tests '(#785)' '[ci' 'skip].' commit 468c9559f53c6783be100c27f65b3a8cf7e1f89d Author: Alan Garny '' Date: Wed Oct 14 18:54:28 2015 +0200 Editor widget: highlight matching braces '(closes' '#786).' commit 8b7443d29ea4545ef08e0a32570f9cfc9b63f3ec Merge: ab9c3a768 5515188fc Author: Alan Garny '' Date: Wed Oct 14 17:16:02 2015 +0200 Merge pull request '#783' from opencor/issue782 Viewer widget: better render superscripts and subscripts '(closes' '#782).' commit 5515188fcb659515f80f37ede68671ce91433704 Author: Alan Garny '' Date: Wed Oct 14 16:50:58 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts '(#782).' commit 51f5d59dfb410c85002b92f44d4ed854a1912dcb Author: Alan Garny '' Date: Wed Oct 14 15:31:22 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts '(#782).' commit 33026d402c952d16d8a2f9ebd2fefa1958bb23dc Author: Alan Garny '' Date: Wed Oct 14 15:10:57 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts '(#782)' '[ci' 'skip].' commit 7f2a712ac46e17a408bea63fd64e19d4330cfd38 Author: Alan Garny '' Date: Wed Oct 14 15:02:50 2015 +0200 Merge branch ''\''master'\''' into issue782. commit 32a8173838d5ebec55be1f2d9ee86089a6ac358b Author: Alan Garny '' Date: Wed Oct 14 15:01:31 2015 +0200 Viewer widget: some work on better rendering superscripts and subscripts '(#782)' '[ci' 'skip].' commit ab9c3a768ee20d3b4061dbf4147af95dc94666aa Author: Alan Garny '' Date: Wed Oct 14 14:57:32 2015 +0200 Qwt: some minor cleaning up of the MathML renderer '[ci' 'skip].' commit 30b1e228a56942c9d7c127d8c182f7719143b243 Author: Alan Garny '' Date: Wed Oct 14 10:24:20 2015 +0200 Qwt: some minor cleaning up of the MathML renderer '[ci' 'skip].' commit a11593934402c001833783176d3b660436d390fb Author: Alan Garny '' Date: Mon Oct 12 19:15:55 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit c67a1707ca46540a234dbd239a7c7a0e3e571e86 Merge: 3c0c419b3 9c188367d Author: Alan Garny '' Date: Mon Oct 12 18:53:26 2015 +0200 Merge pull request '#781' from opencor/issue780 libgit2: upgraded to version 0.23.3 '(closes' '#780).' commit 9c188367d821adb638ccc71b9b79cba8aa268d75 Author: Alan Garny '' Date: Mon Oct 12 18:29:59 2015 +0200 libgit2: upgraded to version 0.23.3 '(#780).' commit 72d3738c490525ba887e433d4152e66efc1e15a4 Author: Alan Garny '' Date: Mon Oct 12 17:49:23 2015 +0200 libgit2: some work on upgrading to version 0.23.3 '(#780)' '[ci' 'skip].' commit 3c0c419b342ff8521cb6474fc10d928a420e92a6 Author: Alan Garny '' Date: Mon Oct 12 16:43:52 2015 +0200 Some slight updates to the developer documentation '[ci' 'skip].' commit 7777b7e3d6f8345642638e8b0d2d9b85a0f88acc Merge: 4187c7b57 80f7aa22e Author: Alan Garny '' Date: Fri Oct 9 15:49:34 2015 +0200 Merge branch ''\''master'\''' into issue33. commit 80f7aa22ec92d86a07fc7aa3683611e9c18e5a61 Author: Alan Garny '' Date: Fri Oct 9 15:49:19 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue. commit 4187c7b57688f7213874ba050c9949a9ce85214a Merge: 5164ce6d7 437263cf7 Author: Alan Garny '' Date: Fri Oct 9 14:43:13 2015 +0200 Merge branch ''\''master'\''' into issue33. commit 437263cf788d7b2caed28ec113448b2bf71d3c41 Author: Alan Garny '' Date: Fri Oct 9 14:42:02 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue. commit ae835678b0c317229f85e8c1eb357da785dcd819 Author: Alan Garny '' Date: Fri Oct 9 14:05:40 2015 +0200 Some minor cleaning up. Not sure why it was '(still?)' there, but we $'don\342\200\231t' need access to the plugin manager within a test, so removed it, thus making it $'\342\200\230easier\342\200\231' to build OpenCOR. commit e2d62e4526152b5abb91162e9d99a69a07939d16 Author: Alan Garny '' Date: Fri Oct 9 13:40:21 2015 +0200 Some minor cleaning up. Make use of '[Core::]nativeCanonicalFileName()' and '[Core::]nativeCanonicalDirName()' wherever possible. commit 6a289b69c12ff8da1da60d9aa8762b57da7a3e6a Author: Alan Garny '' Date: Thu Oct 8 18:10:58 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cbe260ee979023754b9c1d75e30d372319471ff5 Author: Alan Garny '' Date: Thu Oct 8 17:05:07 2015 +0200 Single Cell view + SED-ML: addressed a Windows-related issue '[ci' 'skip].' commit 9e985377e60587e38053157f01a0a99a0f677b38 Author: Alan Garny '' Date: Thu Oct 8 17:04:44 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5164ce6d703786046e91133a29f0fa3499aeea3d Author: Alan Garny '' Date: Thu Oct 8 16:20:08 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit a6d7e8cb87a51192ed0e6469ec2ded29cdd42f1e Author: Alan Garny '' Date: Thu Oct 8 16:16:01 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 1f826b70916bed4fa34a3328f51c32176a442148 Author: Alan Garny '' Date: Thu Oct 8 14:44:36 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit f390eaf35d335d6295ce64ebad47c0291ed792cb Merge: 677a9502e 097ce69ba Author: Alan Garny '' Date: Thu Oct 8 11:20:39 2015 +0200 Merge branch ''\''master'\''' into issue33. commit 097ce69baa07d89366608addd1228642248306e9 Author: Alan Garny '' Date: Thu Oct 8 11:19:26 2015 +0200 Rely on Qt itself to determine the OS name '[ci' 'skip].' Things have apparently improved '(or' had I never noticed the 'QSysInfo::prettyProductName()' function 'before?!)' and it allows to $'\342\200\230determine\342\200\231' the version of an OS that is not yet officially supported by Qt '(e.g.' OS X 10.11 using Qt '5.4.2).' commit 677a9502ed8557bac7ec793c8f1ae0af3227b443 Author: Alan Garny '' Date: Wed Oct 7 19:37:35 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' We can now create a new or update an existing CellML 1.0 file based on the results of a simulation. commit d75992bb3604c9458624c81e770ac46f9f520bb2 Merge: 3ef2353a1 f3b1b058f Author: Alan Garny '' Date: Wed Oct 7 19:29:43 2015 +0200 Merge branch ''\''master'\''' into issue33. commit f3b1b058fd6319ed884bdb0672565372754e87c8 Author: Alan Garny '' Date: Wed Oct 7 19:28:00 2015 +0200 Updated the developer documentation following our changes to the sample plugins '[ci' 'skip].' commit 2f2d2ec164d832166f5ed1a017031594cd0335e1 Author: Alan Garny '' Date: Wed Oct 7 18:25:55 2015 +0200 Updated our sample plugins following our slight simplification to the plugin interface. commit e04c8171395e4014ea37e5c257a0389b4a2c3f4e Author: Alan Garny '' Date: Wed Oct 7 18:05:42 2015 +0200 Plugin interface: 'don'\''t' pass a pointer to the main window in 'initializePlugin()' anymore. commit 4053233cb83b425ae946349531a48f1a10adaf08 Author: Alan Garny '' Date: Wed Oct 7 17:34:14 2015 +0200 Slight update to the user documentation following issue '#779' '[ci' 'skip].' commit 0aefcc53740e3c7959732d42bf810b5e90fb493d Author: Alan Garny '' Date: Wed Oct 7 17:33:39 2015 +0200 OS X 10.11 '(El' 'Capitan):' some work on addressing an issue with some parts of the GUI being black '(closes' '#779).' commit a778403462e64de962e1938ce36d5295c484d1b5 Author: Alan Garny '' Date: Wed Oct 7 17:33:22 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8afff144b97812eebed6b95139f2586d6cf3d9aa Author: Alan Garny '' Date: Wed Oct 7 17:22:56 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 61c39925ff12125e190f54bf8154326cfa1f1764 Author: Alan Garny '' Date: Wed Oct 7 16:57:09 2015 +0200 OS X 10.11 '(El' 'Capitan):' some work on addressing an issue with some parts of the GUI being black '(#779)' '[ci' 'skip].' commit 6e887603cb8b3f90748050a51c6cf613e3f765e2 Author: Alan Garny '' Date: Wed Oct 7 16:34:02 2015 +0200 OS X 10.11 '(El' 'Capitan):' some work on addressing an issue with some parts of the GUI being black '(#779)' '[ci' 'skip].' commit 6d9ea4e42d36a7b4a7f7a55ce0e831e9873d6184 Author: Alan Garny '' Date: Wed Oct 7 15:05:56 2015 +0200 OS X 10.11 '(El' 'Capitan):' some work on addressing an issue with some parts of the GUI being black '(#779)' '[ci' 'skip].' commit 6c134584bbf94972797693f772eea1318b5b9f9d Author: Alan Garny '' Date: Tue Oct 6 17:29:26 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f32dbf1541f76497eaae716c49982d51a552a91 Author: Alan Garny '' Date: Tue Oct 6 11:54:55 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3ef2353a1b15c9599497ec293aec22adeceb60ed Author: Alan Garny '' Date: Tue Oct 6 10:28:24 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit ffadc31d1b375e9cc254373fc34ef6baf631fb43 Author: Alan Garny '' Date: Mon Oct 5 18:23:46 2015 +0200 Single Cell view: some work on creating a new or updating an existing CellML file based on the results of a simulation '(#33)' '[ci' 'skip].' commit 5fd4acb87932a2b26d8f64d2136189e8e8f07cf3 Author: Alan Garny '' Date: Mon Oct 5 16:49:25 2015 +0200 Content to Presentation MathML conversion: 'don'\''t' generate some unnecessary parentheses '(closes' '#774).' commit 96faaae0f862a0d18915d8d6dac7f80f59afe174 Merge: 6813c2567 b97ae55b9 Author: Alan Garny '' Date: Sat Oct 3 21:15:06 2015 +0200 Merge pull request '#778' from opencor/issue739 LLVM: upgraded to version 3.7.0 '(closes' '#739).' commit b97ae55b91773f3b23eed886090161da47c801d1 Author: Alan Garny '' Date: Sat Oct 3 20:24:53 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739).' commit 55b05b443e8bf713d90161a38e459f9750391f8f Author: Alan Garny '' Date: Sat Oct 3 14:43:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 6813c2567ac797b1a2adb7d95648e80a2323fea0 Merge: 1f03f2063 f1ffe4d0e Author: Alan Garny '' Date: Sat Oct 3 12:04:29 2015 +0200 Merge pull request '#777' from opencor/issue739 LLVM: upgraded to version 3.7.0 '(closes' '#739).' commit f1ffe4d0e7d396c2876e7aa9744084fff476c255 Author: Alan Garny '' Date: Sat Oct 3 11:21:23 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739).' commit c5778e6688f9ef92c1a3adbb57e2c9efa7937c66 Author: Alan Garny '' Date: Sat Oct 3 11:10:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739).' commit 2717533c4363e40fe41fd2cd237bcdfc86c40b01 Author: Alan Garny '' Date: Sat Oct 3 10:37:42 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739).' commit 401ca4bfae73c20393d494ac07ae3798f4f7f7ed Author: Alan Garny '' Date: Sat Oct 3 10:37:25 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 1f03f206308137d75fed429c70bcd16e9ac86946 Author: Alan Garny '' Date: Sat Oct 3 10:27:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 377ebc3e724e8ef6cc06a90d1e01cb7a281ed9f8 Author: Alan Garny '' Date: Sat Oct 3 10:21:33 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739).' commit e46d54411a2fe5db79536ed2807c7c74e3d3ed17 Author: Alan Garny '' Date: Sat Oct 3 01:34:29 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 3a2f859316555ccbe889ddad7eaaf136dc6e6816 Author: Alan Garny '' Date: Sat Oct 3 01:22:11 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 890c6672cffea9b0b77e2bc5f47b8b470eca659f Author: Alan Garny '' Date: Sat Oct 3 00:34:51 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit a8ce3d51cd88bd7af2471538d170c0e31ec0c590 Author: Alan Garny '' Date: Sat Oct 3 00:19:40 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 1136d69988b47b81e21eca161d0526148ed9cb33 Author: Alan Garny '' Date: Fri Oct 2 23:51:30 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit b9c8db3b00cbacc0d217bbd139e6af18d8248ce1 Author: Alan Garny '' Date: Fri Oct 2 18:21:06 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 621b1eaf1f15ccc1b97be206c5306c7444cebebc Author: Alan Garny '' Date: Fri Oct 2 16:50:28 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 7d8e10b6236dd3a2a3c76d955f2b82c32b42e069 Merge: abe0ca74a 5de1ce70a Author: Alan Garny '' Date: Fri Oct 2 13:33:04 2015 +0200 Merge pull request '#776' from opencor/issue775 Single Cell view + SED-ML: namespace prefixes used in XPath expressions are now defined '(closes' '#775).' commit 5de1ce70ae3f789591fd03d66318730c485efae1 Author: Alan Garny '' Date: Fri Oct 2 13:09:16 2015 +0200 Single Cell view + SED-ML: namespace prefixes used in XPath expressions are now defined '(#775).' commit abe0ca74a837554dbee450aefea90b2915c01459 Author: Alan Garny '' Date: Thu Oct 1 16:25:23 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit 08997c9953fb3880334e656106f7b917c5b7c56a Author: Alan Garny '' Date: Thu Oct 1 16:23:46 2015 +0200 Viewer widget: now allow for both capital and minuscule Greek characters to be rendered '(closes' '#773).' commit 601dbed92b03525666415687721e88e03db7f063 Author: Alan Garny '' Date: Thu Oct 1 15:49:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fc742fe969d5a84f9f74f201a6c39c9589095fdb Author: Alan Garny '' Date: Thu Oct 1 15:41:00 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 109796c066b5a76740f0b330106fac4766b93ffb Author: Alan Garny '' Date: Thu Oct 1 11:01:43 2015 +0200 LLVM: some work on upgrading to version 3.7.0 '(#739)' '[ci' 'skip].' commit 90bae5d6a81fc83b59598c5b494f46d755823549 Merge: fc7a8cae3 69244c41a Author: Alan Garny '' Date: Thu Oct 1 09:49:44 2015 +0200 Merge pull request '#772' from opencor/issue743 Single Cell view + SED-ML: can now export a simulation to a COMBINE Archive file '(closes' '#743).' commit 69244c41a648f0307a93fff97fde39d26e2277d3 Author: Alan Garny '' Date: Thu Oct 1 09:31:09 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit f78b2700688269bd5f44ab143ad617a2100728f4 Merge: 989defc1e fc7a8cae3 Author: Alan Garny '' Date: Thu Oct 1 09:15:03 2015 +0200 Merge branch ''\''master'\''' into issue743. commit fc7a8cae30735bc11791410111215e5c855f0dae Author: Alan Garny '' Date: Thu Oct 1 08:54:17 2015 +0200 Travis CI: improved our calls to brew. Thanks to $'@The-Compiler\342\200\231s' suggestion to pass -v to the brew command '(see' 'https://github.com/Homebrew/homebrew/issues/44446).' commit 681d0891fcd4f6377f48b59c52a21599d9a1b04f Author: Alan Garny '' Date: Thu Oct 1 08:52:36 2015 +0200 CellML Annotation view: addressed the case where looking up an unknown term when viewing a locked file results in a blank page '(closes' '#765)' '[ci' 'skip].' commit e50ddfc75888d4b6d27e719da6b9692d1cc67cd5 Merge: 52ddd65e8 c251089cc Author: Alan Garny '' Date: Wed Sep 30 19:22:33 2015 +0200 Merge pull request '#771' from opencor/issue765 CellML Annotation view: addressed the case where looking up an unknown term when viewing a locked file results in a blank page '(closes' '#765).' commit c251089cce02af1d664498374448274c8c4ab783 Author: Alan Garny '' Date: Wed Sep 30 18:57:16 2015 +0200 CellML Annotation view: some work towards addressing the case where looking up an unknown term when viewing a locked file results in a blank page '(#765).' commit 1421844ac6928724a7cf4b85c3041fbe03843d20 Author: Alan Garny '' Date: Wed Sep 30 18:47:08 2015 +0200 CellML Annotation view: some work towards addressing the case where looking up an unknown term when viewing a locked file results in a blank page '(#765)' '[ci' 'skip].' commit 52ddd65e8bdd7eab165a30c5e60fb298eb56a6c4 Author: Alan Garny '' Date: Wed Sep 30 18:34:00 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d03f6884c2c8987269d9549a8d23f6e4b739fa9d Author: Alan Garny '' Date: Wed Sep 30 18:08:05 2015 +0200 Fixed a small issue with keeping Ctrl+Shift+T down '(to' reopen most recent 'files)' potentially resulting in a recent file being opened several times '(closes' '#770).' commit 470717975c6ada43e073572a4b10d0d4f6ee7bde Author: Alan Garny '' Date: Wed Sep 30 17:36:46 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 989defc1edfb7b6a92c28d03abf7605a6eeefed9 Merge: c1fe63f74 1c2050c57 Author: Alan Garny '' Date: Wed Sep 30 11:43:31 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 1c2050c571e64d52e52394ee4917a211bdbf4a85 Author: Alan Garny '' Date: Wed Sep 30 11:42:46 2015 +0200 Travis CI: now uses CMake 3.3.2 on Linux. commit c1fe63f741594760807f5cfc43e3f2c39c98be9a Merge: 23f7b7103 e22bdae58 Author: Alan Garny '' Date: Wed Sep 30 11:38:43 2015 +0200 Merge branch ''\''master'\''' into issue743. commit e22bdae58f780825d6fa18051a9f61441c7ab7fb Author: Alan Garny '' Date: Wed Sep 30 11:38:25 2015 +0200 Travis CI: slight brew-related ''\''improvements'\''.' commit 23f7b71038953672d8e0e53c143602c316b95c20 Merge: 7cbd826ab 40fbf5fe3 Author: Alan Garny '' Date: Wed Sep 30 11:18:28 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 40fbf5fe3e37a5034c2641de174fe422796d1907 Author: Alan Garny '' Date: Wed Sep 30 11:16:44 2015 +0200 Viewer widget: improved the rendering of certain equations '[ci' 'skip].' To render '(with' subscripts 'on)' a = '-b_c*d_e+f;' used to result in b_c being rendered with c as a subscript of b '(as' 'expected),' but then we would have expected the same for d_e '(i.e.' have e rendered as a subscript of 'd),' but instead it was simply rendered as d_e '(i.e.' no subscript 'whatsoever).' commit 09a1235b6f52468e070397dfee15912753e7b09f Author: Alan Garny '' Date: Wed Sep 30 11:09:18 2015 +0200 Viewer widget: slight improvements to the processing of a node '[ci' 'skip].' commit f046d0bbb112f515147012a7b906d0e881bbd278 Author: Alan Garny '' Date: Wed Sep 30 10:29:07 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7cbd826ab77caf652d3fb3457b59951467cece84 Merge: c611a33c6 b780b6a54 Author: Alan Garny '' Date: Tue Sep 29 18:35:58 2015 +0200 Merge branch ''\''master'\''' into issue743. commit b780b6a548e052cf403ca18c351194b439b33bd5 Merge: 711b52e53 888c493da Author: Alan Garny '' Date: Tue Sep 29 18:35:27 2015 +0200 Merge pull request '#769' from opencor/issue768 Added a Content MathML to Presentation MathML converter '(closes' '#768).' commit 888c493daeb943fedaf65f8bb0dd86335837841d Author: Alan Garny '' Date: Tue Sep 29 18:11:27 2015 +0200 Added a Content MathML to Presentation MathML converter '(#768).' commit c611a33c6ab50a0acd55136d35aa7b7243eb4d2a Merge: 9d475195d 711b52e53 Author: Alan Garny '' Date: Tue Sep 29 14:52:46 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 711b52e531a3edd1436a465cc36731bcaead63ac Merge: b70bc3094 2db293c31 Author: Alan Garny '' Date: Tue Sep 29 14:29:36 2015 +0200 Merge pull request '#767' from opencor/issue766 List what is new between two consecutive snapshots '(closes' '#766).' commit 2db293c3144146832812184d73e58eece6806e21 Author: Alan Garny '' Date: Tue Sep 29 13:57:48 2015 +0200 Travis CI: there is definitely a problem of sorts with the qt5 formula in brew, so '(temporarily)' redirecting the output to /dev/null. commit b009e003d3e17178c5fea2532e2113c5d0c30c92 Author: Alan Garny '' Date: Tue Sep 29 13:29:43 2015 +0200 Travis-CI: the previous commit passed, so reverting to make sure that 'it'\''s' really what we need to do. If it is really what we need to do, then it would be because of installing Qt 5 through brew, which now seems to be outputting a lot of stuff when run through Travis-CI. Could that be due to the recent release of 5.5.0_1 bottle '(see' https://github.com/Homebrew/homebrew/commit/4ea4fd83963d1c1eb1e6fc024be9 '719f8010748f)?' commit c736ba4c99f53bc58dbbb87f99416435ccad66b5 Author: Alan Garny '' Date: Tue Sep 29 13:15:11 2015 +0200 Travis-CI: trying to address an issue on OS X about $'\342\200\234the' log length '[having]' exceeded the limit of 4 $'MB\342\200\235.' commit 65ab0f1a32527fced0fbf9f6484e15815b5c1647 Merge: cd19e6f79 b70bc3094 Author: Alan Garny '' Date: Tue Sep 29 10:42:02 2015 +0200 Merge branch ''\''master'\''' into issue766. commit cd19e6f79f4913bc64409cb94992c2dd2a489336 Author: Alan Garny '' Date: Tue Sep 29 10:40:35 2015 +0200 Some work on listing what is new between two consecutive snapshots '(#766).' commit b70bc3094a0f1023e20eb8683298321cba219fd1 Author: Alan Garny '' Date: Tue Sep 29 10:17:32 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 29ea156d447b196defa3688eaa22282f84329cd4 Author: Alan Garny '' Date: Tue Sep 29 09:41:26 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit c532df3d7d5e53f7fea5c0bad50ecc81a40a772a Author: Alan Garny '' Date: Mon Sep 28 19:11:09 2015 +0200 Some work on listing what is new between two consecutive snapshots '(#766)' '[ci' 'skip].' commit 50530dfb93597cc2ab531e0c454a12084c8f5add Author: Alan Garny '' Date: Mon Sep 28 18:43:27 2015 +0200 Some work on listing what is new between two consecutive snapshots '(#766)' '[ci' 'skip].' commit e1192373dd80d8228b1c13ad5e588f871a28d2be Author: Alan Garny '' Date: Mon Sep 28 17:37:01 2015 +0200 Some work on listing what is new between two consecutive snapshots '(#766)' '[ci' 'skip].' commit 28d3718c9b1e09c4549ea4ebf30e7ac9c95cb2c1 Author: Alan Garny '' Date: Mon Sep 28 16:13:26 2015 +0200 Some work on listing what is new between two consecutive snapshots '(#766)' '[ci' 'skip].' commit 8cbde57c77fd0bcd58a74f2ce7e29e8670e32760 Author: Alan Garny '' Date: Mon Sep 28 16:10:26 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 38519c5fa2136d09ba739fdfe87d251b9e890210 Author: Alan Garny '' Date: Mon Sep 28 15:24:51 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit 722fb14f325919d7dd3ee2ae3530471dfc558e3c Author: Alan Garny '' Date: Sun Sep 27 17:15:59 2015 +0200 New snapshots. commit 9d475195db728dbbf3f03b3346e14d1dd4014f81 Author: Alan Garny '' Date: Sun Sep 27 16:39:38 2015 +0200 Merge branch ''\''master'\''' into issue743. commit fc2cc56531da867bb4367b8e987afd029e859feb Author: Alan Garny '' Date: Sun Sep 27 16:27:08 2015 +0200 Viewer widget: merge successive 'mrow'\''s' '(closes' '#763).' commit 8b7e30e89f4ef1b8fa3df168fa9d42a89d5cf219 Author: Alan Garny '' Date: Sun Sep 27 16:21:02 2015 +0200 Viewer widget: merge successive 'mrow'\''s' '(closes' '#763).' commit 250187784368149b55bc1d8f7126184f4ed4fd90 Author: Alan Garny '' Date: Sun Sep 27 15:29:37 2015 +0200 Content to Presentation MathML conversion: fixed a small issue with the bvar element '[ci' 'skip].' commit 20bc78d534e684d28fc7b5af3194cc55cda36a4a Author: Alan Garny '' Date: Sun Sep 27 14:41:10 2015 +0200 Viewer widget: can now, on Windows, copy a rendered equation to the clipboard '(closes' '#764).' commit 74ead6d9254a680b2467c6672f49ab50fb0fbb58 Author: Alan Garny '' Date: Sun Sep 27 14:34:09 2015 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 4e117326f2f6b1ea5604772655d2bde66932f9b1 Author: Alan Garny '' Date: Sun Sep 27 13:19:04 2015 +0200 Qwt: slight improvement to QwtMathMLDocument '[ci' 'skip].' commit 8fdfb103a8af26be430220f62c1c7ddff3fca481 Author: Alan Garny '' Date: Sun Sep 27 12:58:49 2015 +0200 Slight updates to the user documentation '(following' issue '#761).' commit 400f718f731b12fa19eec208ebbb883366988ac5 Merge: 21df7adcb f0c2cec2d Author: Alan Garny '' Date: Sun Sep 27 12:46:50 2015 +0200 Merge pull request '#762' from opencor/issue761 Content to Presentation MathML conversion: fixed some issues with the minus operator '(closes' '#761).' commit f0c2cec2d7134e67973e250b1ceaa1791b3e8a7e Author: Alan Garny '' Date: Sun Sep 27 12:38:14 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator '(#761)' '[ci' 'skip].' Fixed the issue with 'a=-(b*c)+d.' commit 0774810d64a1069d21f07201a2cdd85ec5cae6ae Author: Alan Garny '' Date: Sun Sep 27 10:14:56 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator '(#761)' '[ci' 'skip].' Fixed the issue with 'a=-(b+c)+d' and 'a=d-(b+c).' commit c202ea7abd4597b0f6b7857b94db0482195c41b7 Author: Alan Garny '' Date: Sun Sep 27 09:48:02 2015 +0200 Content to Presentation MathML conversion: some work towards fixing some issues with the minus operator '(#761)' '[ci' 'skip].' Improved the conversion of 'a=-(b*c).' commit 21df7adcb1550587300fbad99c81b31c9502610b Author: Alan Garny '' Date: Sun Sep 27 09:07:37 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit 226082ad7a7fb128d8020fc30c0bd26486c36c84 Author: Alan Garny '' Date: Sat Sep 26 20:20:25 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit 0436595f92cd701cd67e86397372b589e320f1f9 Author: Alan Garny '' Date: Sat Sep 26 20:06:47 2015 +0200 Now use ctopff.xsl to do our XSL transformation from Content to Presentation MathML. commit bff018db876b747344f8a677dbc678ceac123f8b Author: Alan Garny '' Date: Sat Sep 26 18:33:58 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a36aad9ffe4b5b4a33777cf6fff9c50aee6041ff Author: Alan Garny '' Date: Fri Sep 25 17:04:01 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 1b4f7dbf43fee0bc2dd7dc544adace43d28711e4 Author: Alan Garny '' Date: Fri Sep 25 16:56:20 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 210791181570912d838f7675558bf69c55ef56d2 Merge: 275444f61 b6ec7f863 Author: Alan Garny '' Date: Fri Sep 25 16:55:32 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit b6ec7f863475483a759a8d61c6e6eb6a396e171e Author: Alan Garny '' Date: Fri Sep 25 16:52:29 2015 +0200 ZIP support: make sure that we can extract files in subdirectories '(#757).' Say that you want to add '```dir/file.txt```' to a ZIP writer. Then, to extract all of the ZIP file will fail because '```dir```' $'doesn\342\200\231t' exist. Now, I would have thought that this could have been solved by adding the '```dir```' directory to our ZIP writer, but this then results in a ZIP file that cannot be unzipped using OS $'X\342\200\231s' default unzipper. So, instead, during the extraction, we check that the folder in which a file should be extracted exists and if it $'doesn\342\200\231t' then create it. commit 275444f61f5a147c51eb7b74f0daa63456a1baf4 Author: Alan Garny '' Date: Fri Sep 25 15:08:37 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 4acc86639e890c3f35f73d625f27583370f19718 Author: Alan Garny '' Date: Fri Sep 25 15:00:50 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 70ce6143daceaa82c132f4a8e3267a930c588c13 Author: Alan Garny '' Date: Fri Sep 25 15:00:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 00f68ce292af63353afb5d0ded1cd858a5ecf511 Author: Alan Garny '' Date: Fri Sep 25 10:23:56 2015 +0200 Merge branch ''\''master'\''' into issue743. commit f5f3c992cc0b2009957e8a52fbdab34408b87cf4 Author: Alan Garny '' Date: Fri Sep 25 10:22:16 2015 +0200 Some minor cleaning up our ZIP support tests. commit de6962114ab8182674a991c91318c41e5773f45f Author: Alan Garny '' Date: Fri Sep 25 10:19:26 2015 +0200 Merge branch ''\''master'\''' into issue743. commit ccb8ce380a8e77919b12ef2e8df120c5dc321e21 Author: Alan Garny '' Date: Fri Sep 25 10:14:51 2015 +0200 Some minor cleaning up our ZIP support tests. commit 43d1c28fae485394cd12e3fa6aee9b0bb16bacf9 Author: Alan Garny '' Date: Fri Sep 25 09:55:27 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 2d3b305eb009efc947ac99ae10889276c5cc7bf3 Author: Alan Garny '' Date: Fri Sep 25 09:54:53 2015 +0200 Some minor cleaning up our ZIP support tests. commit 60a538cca92ec4444df02242c70dd1c82081316c Author: Alan Garny '' Date: Thu Sep 24 19:36:35 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 5756ac1c5d81768ed288ca4b4d73b6f68cb3c776 Author: Alan Garny '' Date: Thu Sep 24 18:15:14 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 649505081dd832d73d893fa76c26f13cfdb114d1 Author: Alan Garny '' Date: Thu Sep 24 17:55:21 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit ba3f4396845b1d4eafc59c099a17efc57d6e1470 Merge: 19c64ec6d 9436eab3d Author: Alan Garny '' Date: Thu Sep 24 17:40:58 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 9436eab3d691b329346eca3a28d3cde4b40af385 Merge: 279c65998 f19647886 Author: Alan Garny '' Date: Thu Sep 24 17:39:42 2015 +0200 Merge pull request '#760' from opencor/issue759 Made the busy widget enable/disable its remote/direct parent widget '(closes' '#759).' commit f196478861526e01355011ca9cd53e481a9a563d Author: Alan Garny '' Date: Thu Sep 24 17:17:56 2015 +0200 Some work on making a busy widget enable/disable its remote/direct parent widget '(#759).' commit 52d0f84f6cc8813da281b955bdb06351afce8ca1 Author: Alan Garny '' Date: Thu Sep 24 16:24:30 2015 +0200 Some work on making a busy widget enable/disable its remote/direct parent widget '(#759).' commit 19c64ec6d5a14acdd478748560788fc1e324669e Author: Alan Garny '' Date: Thu Sep 24 15:01:55 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 3cd58724094ab8c42d37449d096894d55e173710 Author: Alan Garny '' Date: Thu Sep 24 14:49:55 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 329a11a34953311a847fb1d1d969c8f95ce1b885 Author: Alan Garny '' Date: Thu Sep 24 10:19:17 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 0451123a6c205d2921872bde06fa9f8d0896c10b Author: Alan Garny '' Date: Wed Sep 23 18:37:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit ac44d53554cd8c901f83872907f07e825c12a5cd Author: Alan Garny '' Date: Wed Sep 23 18:31:46 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit ec61b6744a317f4ac07a83304eb657b1d7becbf9 Author: Alan Garny '' Date: Wed Sep 23 18:06:08 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 18a86a4c9bb554d16a1409e91d07b9d42db7822b Author: Alan Garny '' Date: Wed Sep 23 18:00:51 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 279c6599825d73399ccd589b7dc80cd5aabd0822 Author: Alan Garny '' Date: Wed Sep 23 17:56:07 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5c3b6e3f944ead95874be1a8b3cfa8f52a94c0cd Author: Alan Garny '' Date: Wed Sep 23 17:39:44 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 60a7daa544afa1037d7e8f0623f9977b7696bf06 Author: Alan Garny '' Date: Wed Sep 23 17:39:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2009d93cf1f8a35b37263380a00746b8d0decf94 Author: Alan Garny '' Date: Wed Sep 23 16:23:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 4c12bc66a03f18acc6209707514004eb5c2fe0b2 Author: Alan Garny '' Date: Wed Sep 23 16:08:25 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ffa5319fcbf4fe59843bb134f938c24d523eeafb Author: Alan Garny '' Date: Wed Sep 23 15:50:26 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit dae9e20e6fd0412904cd2427b2020f7e706f21dd Author: Alan Garny '' Date: Wed Sep 23 15:48:01 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit b56a35cdc1fd1896a615cff3e9d8aaf12066f52d Author: Alan Garny '' Date: Wed Sep 23 15:46:19 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 6a93939cc0ed02e7a1834c5960ae9612a2119d8f Author: Alan Garny '' Date: Wed Sep 23 15:46:01 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2b9af740862a2caa77a3140e1ebcee83415b8a44 Author: Alan Garny '' Date: Wed Sep 23 15:40:35 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b921c6af4ec94a80adcbb577fb5249e099af5e0b Author: Alan Garny '' Date: Wed Sep 23 15:28:14 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit e6ac06554a036a28df1c0e423c6f4066e135ea5d Author: Alan Garny '' Date: Wed Sep 23 15:11:47 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 17b04c918f08f941b857713c156a6cd90b7501a8 Author: Alan Garny '' Date: Wed Sep 23 15:06:59 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 7efd988da6bd6d2b6602cd4a8b51e361299fe1f4 Author: Alan Garny '' Date: Wed Sep 23 13:07:54 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit b75a8bb398b1b746922e121d13063baffcee4149 Author: Alan Garny '' Date: Wed Sep 23 11:22:35 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 4d62c27a6189f91cc6beb35b6fa19d5884530bde Author: Alan Garny '' Date: Wed Sep 23 11:22:08 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 1a7e0b8ee8931e59b1554dc15b5dce5eb721c842 Author: Alan Garny '' Date: Wed Sep 23 11:01:43 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit c6f17152f1af9121b5f6d7594c18209fa6a4e729 Author: Alan Garny '' Date: Wed Sep 23 10:46:16 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d9ad224e2da9960914a8a25882d66a537208149b Author: Alan Garny '' Date: Wed Sep 23 10:45:44 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 6e7d8558a15c893cf87b9dac0aa9407677790066 Author: Alan Garny '' Date: Tue Sep 22 18:25:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 4a2fb28cb66fd5906cff00344ba71cf20bdf7940 Author: Alan Garny '' Date: Tue Sep 22 18:18:27 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 91c354767973c2226e2e6547a51c4e7a15069fa7 Author: Alan Garny '' Date: Tue Sep 22 18:08:13 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 3ff79ee3051f95054a644892c3bc37ab499d2ea0 Author: Alan Garny '' Date: Tue Sep 22 18:07:56 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e4fdd020d9ab67e8cc71142ee554a4368b977c6f Author: Alan Garny '' Date: Tue Sep 22 17:55:06 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit b369f399c59abf15e12cc1566db6362d729ed226 Merge: 9e98900f6 9e07f8bf7 Author: Alan Garny '' Date: Tue Sep 22 17:36:32 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 9e07f8bf7ffc8a1ade4fe0a44adedbf1477bdd13 Author: Alan Garny '' Date: Tue Sep 22 17:36:20 2015 +0200 Some minor refactoring '[ci' 'skip].' commit 9e98900f652808b6b47434119fadc20ec8861f7a Author: Alan Garny '' Date: Tue Sep 22 17:31:13 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 672a4ccdb395375b6361c4d6fed94e55a6c4a435 Merge: 6e72c41fb 5f0d876c9 Author: Alan Garny '' Date: Tue Sep 22 16:46:05 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 5f0d876c99b144f4c066a32e1c0471d407fec15a Merge: f088f3333 70186b23e Author: Alan Garny '' Date: Tue Sep 22 16:44:58 2015 +0200 Merge pull request '#758' from opencor/issue757 ZIP support: added support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(closes' '#757).' commit 70186b23eeb919533ff29391fc2dd7bad6c374aa Author: Alan Garny '' Date: Tue Sep 22 16:15:39 2015 +0200 ZIP support: some work on adding support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(#757).' commit e2b640dcf38cf277185ae1903a1a1b4295ba69d8 Author: Alan Garny '' Date: Tue Sep 22 15:31:38 2015 +0200 ZIP support: some work on adding support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(#757)' '[ci' 'skip].' commit 17004b0ba48be184fd08113d0bf4b96e8345c60a Author: Alan Garny '' Date: Tue Sep 22 14:20:37 2015 +0200 Merge branch ''\''master'\''' into issue757. commit f088f33333d58d263d416dc3c2f47c1141425806 Author: Alan Garny '' Date: Tue Sep 22 14:20:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 01be2a3be062fff34a256922d8305f5cf05cbdf6 Author: Alan Garny '' Date: Tue Sep 22 14:17:49 2015 +0200 QZip: some work on adding support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(#757)' '[ci' 'skip].' commit 4ee93034a58069fa5be1ebe34343c7148d3f2dd3 Author: Alan Garny '' Date: Tue Sep 22 14:12:24 2015 +0200 QZip: some work on adding support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(#757)' '[ci' 'skip].' commit 9a5c0eeca52a591fc2fbe1ef4331d790d988c942 Author: Alan Garny '' Date: Tue Sep 22 14:05:53 2015 +0200 QZip: some work on adding support for ZIP files through 'Qt'\''s' undocumented QZipReader and QZipWriter classes '(#757)' '[ci' 'skip].' commit 797356b820a819d4e3675385decc95dd4b06e505 Author: Alan Garny '' Date: Tue Sep 22 13:19:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e72c41fbef0ba23c0c8c8b593e6051d3942e0b2 Author: Alan Garny '' Date: Tue Sep 22 11:11:20 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 99fcb9cb77549a52e7d383a2344b2535aa8653ff Merge: 0c7bd4f49 d514bd614 Author: Alan Garny '' Date: Tue Sep 22 11:09:30 2015 +0200 Merge pull request '#756' from opencor/issue752 Single Cell view: fixed an issue with changing parameters '(when' a simulation is 'paused)' not having any effect '(closes' '#752).' commit d514bd614f7fcf8b678593700c0fc8bd61bc77c4 Author: Alan Garny '' Date: Tue Sep 22 10:46:54 2015 +0200 Single Cell view: fixed an issue with changing parameters '(when' a simulation is 'paused)' not having any effect '(#752).' commit bf5fd249da14ccbe0dc24db52675a80092d1a21e Author: Alan Garny '' Date: Tue Sep 22 10:38:34 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6238c08eae979ff0c4e264a25040ab6600a0e9a8 Merge: 798a0cab7 0c7bd4f49 Author: David Brooks '' Date: Tue Sep 22 10:33:19 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 9830162f9b428230824744fd06fe0d4146645637 Merge: 713ea01be 0c7bd4f49 Author: Alan Garny '' Date: Mon Sep 21 15:47:56 2015 +0200 Merge branch ''\''master'\''' into issue743. commit 0c7bd4f494b3b581996cea5385b37f05337dd38e Merge: 3f8a31be7 f25f5ba43 Author: Alan Garny '' Date: Mon Sep 21 15:46:03 2015 +0200 Merge pull request '#755' from opencor/issue754 Xcode: upgraded to version 7.0 '(closes' '#754).' commit f25f5ba43274703c300529a9fdade4dc5617854e Author: Alan Garny '' Date: Mon Sep 21 15:23:35 2015 +0200 Xcode: upgraded to version 7.0 '(#754).' commit 3f8a31be724aef8cb5c4a70b95f6fda9f3b6c10b Author: Alan Garny '' Date: Mon Sep 21 13:55:33 2015 +0200 Travis CI: still cannot use Ubuntu 14.04 LTS '(trusty)' as opposed to Ubuntu 12.04 LTS '(precise),' so cleaning up. commit 99a16eee98a831697c8b05ec024621c817e6ee61 Author: Alan Garny '' Date: Mon Sep 21 13:50:31 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS '(trusty)' rather than Ubuntu 12.04 LTS '(precise).' commit c38b45aaf875a23e3b6b352804e5aeb0b869bb29 Author: Alan Garny '' Date: Mon Sep 21 13:39:11 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS '(trusty)' rather than Ubuntu 12.04 LTS '(precise).' commit cbba7e7bd7b1c14b923ec34717599ec9be60c093 Author: Alan Garny '' Date: Mon Sep 21 13:37:48 2015 +0200 Travis CI: checking whether we can use Ubuntu 14.04 LTS '(trusty)' rather than Ubuntu 12.04 LTS '(precise).' commit 5e1adb4b239cf95e6c8fcf754be53bdf69fe06aa Author: Alan Garny '' Date: Mon Sep 21 13:36:35 2015 +0200 Travis CI: only notify team@opencor.ws. commit faec23fd3523b77bef87f7dae01e88389af18710 Merge: bd0197f36 75e235158 Author: Alan Garny '' Date: Mon Sep 21 11:14:33 2015 +0200 Merge pull request '#753' from opencor/issue751 SED-ML API: upgraded to version 0.3.1 '(closes' '#751).' commit 75e235158274338f8ca7f082fdc1f496dc4f1fa3 Author: Alan Garny '' Date: Mon Sep 21 10:52:55 2015 +0200 libSEDML: upgraded to version 0.3.1 '(#751).' commit 713ea01bef65cc059003dfa3785df766fdbcd77d Author: Alan Garny '' Date: Mon Sep 21 10:37:13 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit bd0197f367b8999aa92f51b12fe9096c078704f2 Author: Alan Garny '' Date: Sun Sep 20 11:54:53 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 176bebf0a5601e50b751ec1c7b8047ba749475f3 Author: Alan Garny '' Date: Sat Sep 19 16:39:04 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 7b160a9c7044bbfa6ccfec611b2f0fb279a17c5e Author: Alan Garny '' Date: Sat Sep 19 15:46:51 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit c3c27488121081aa943042af70af595ca0bf7073 Author: Alan Garny '' Date: Sat Sep 19 15:44:51 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 9555241c3e6efd7ae5973b81837d5c91cf92efd8 Author: Alan Garny '' Date: Sat Sep 19 14:07:12 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cf1a6d5b10538e7bc4fb2a486f7137caa9ee34cd Author: Alan Garny '' Date: Fri Sep 18 14:57:23 2015 +0200 libSEDML: upgraded to version 0.3.1 '(#751).' commit 3509c0943d6d6c06cc534fdb183f9f0f032eef41 Merge: 1f5363e7b b49def259 Author: Alan Garny '' Date: Thu Sep 17 15:57:28 2015 +0200 Merge branch ''\''master'\''' into issue743. commit b49def2590ca03bcbfb9c3cc5ba1e97798b241a8 Author: Alan Garny '' Date: Thu Sep 17 15:15:47 2015 +0200 Single Cell view: improved the GUI when it comes to exporting simulation data '[ci' 'skip].' commit 1f5363e7b18e82b300de4dd7cee86d01bfe53213 Author: Alan Garny '' Date: Thu Sep 17 14:55:48 2015 +0200 Single Cell view + SED-ML: some work on making it possible to export a simulation to a COMBINE Archive file '(#743)' '[ci' 'skip].' commit 9d70323d0b84ac2755064431d681cb72598fac7e Author: Alan Garny '' Date: Thu Sep 17 09:55:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a480025952a36816023c9093fc8e2c7656a89445 Merge: 812102d11 55d90423b Author: Alan Garny '' Date: Wed Sep 16 10:37:59 2015 +0200 Merge pull request '#750' from opencor/issue749 libgit2: upgraded to version 0.23.2 '(closes' '#749).' commit 55d90423b0647dee5bfcd1755ec2b07e4b5bae99 Author: Alan Garny '' Date: Wed Sep 16 10:15:41 2015 +0200 libgit2: some work on upgrading to version 0.23.2 '(#749).' commit 72927945b324096123f814ae770ec127c69d8d6a Author: Alan Garny '' Date: Wed Sep 16 09:56:30 2015 +0200 libgit2: some work on upgrading to version 0.23.2 '(#749)' '[ci' 'skip].' commit 5fdfd77b9fb91f9e58a965bd02f6eeeefa117ebe Author: Alan Garny '' Date: Wed Sep 16 09:52:15 2015 +0200 libgit2: some work on upgrading to version 0.23.2 '(#749)' '[ci' 'skip].' commit c115a9759016a0a81b9e1fa11c4fed74ab8e4ff8 Author: Alan Garny '' Date: Wed Sep 16 09:51:22 2015 +0200 libgit2: some work on upgrading to version 0.23.2 '(#749)' '[ci' 'skip].' commit 812102d117c350061b4fcf706b66054b037576fe Merge: 911fccbcf ce03b8e32 Author: Alan Garny '' Date: Tue Sep 15 23:53:31 2015 +0200 Merge pull request '#748' from opencor/issue747 Check whether an Internet connection is available before doing anything Internet-related '(closes' '#747).' commit ce03b8e3278252af31c02097b5cfa0e2161e77c1 Merge: ead2a5d16 911fccbcf Author: Alan Garny '' Date: Tue Sep 15 23:23:09 2015 +0200 Merge branch ''\''master'\''' into issue747. commit ead2a5d165cf87f119084e7807def16540efcb55 Author: Alan Garny '' Date: Tue Sep 15 23:18:33 2015 +0200 Some work on checking whether an Internet connection is available before doing anything Internet-related '(#747).' commit 911fccbcf3f3349d248fb4f068b4ff56a846a20e Author: Alan Garny '' Date: Tue Sep 15 22:15:40 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2f94d93ae5383de8b8aa5eaf282668d54f4cdf85 Author: Alan Garny '' Date: Tue Sep 15 21:46:21 2015 +0200 Some work on checking whether an Internet connection is available before doing anything Internet-related '(#747)' '[ci' 'skip].' commit 80c9bb7e273088b159c449e0918bb3950ad88031 Author: Alan Garny '' Date: Tue Sep 15 17:29:40 2015 +0200 Single Cell view + SED-ML: made it possible to plot derivatives '(closes' '#744).' Argh, forgot that one needs to convert a number to a string to pass it as an argument to a 'QString!' commit f1f843a9a51b4f93b3aa44c0d5960c806a508f11 Author: Alan Garny '' Date: Tue Sep 15 17:17:33 2015 +0200 Single Cell view: fixed an issue with a wrong Y axis range being used in a particular case '(closes' '#745).' commit 8adab8d2fec30d30a3b377cadebc1df448f672f0 Author: Alan Garny '' Date: Tue Sep 15 17:14:26 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d6215dfcead2b8fcfe6ca5f6410b33f17c2913b3 Author: Alan Garny '' Date: Tue Sep 15 16:58:22 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 914ac17c16a4b209c14de01a49d13eeda98d6e59 Author: Alan Garny '' Date: Tue Sep 15 10:27:40 2015 +0200 Single Cell view + SED-ML: made it possible to plot derivatives '(closes' '#744).' commit c483380d886bbc1281a26ffa0772d7e3b23aa6f3 Author: Alan Garny '' Date: Fri Sep 11 22:36:46 2015 +0100 Solvers: added new KiSAO ids '[ci' 'skip].' commit 7d244ff236abb19dd1471cde2e40924aa04b0ec6 Author: Alan Garny '' Date: Tue Sep 8 18:44:07 2015 +0200 SED-ML export: had forgotten to set a task reference for our variables '(#684)' '[ci' 'skip].' commit db1f171a663cd729632c77e9b84814df7f576f06 Author: Alan Garny '' Date: Tue Sep 8 17:01:37 2015 +0200 Allow 'Core::getSaveFileName()' to return the same file name '[ci' 'skip].' The original idea was that if we were to save a file under a new name, then we $'couldn\342\200\231t' use the same name for the file. However, this can be a problem if we want to export a SED-ML file since we will give 'Core::getSaveFileName()' the file path of a SED-ML. So, if we were to agree to using that file name, 'Core::getSaveFileName()' would complain, which is not what we want. So, instead, it should be the caller who should handle, if needed, the case where we are using the same file name. commit 9702bbf6fee0888c71e946da9748d17d478cdbe6 Author: Alan Garny '' Date: Tue Sep 8 16:38:54 2015 +0200 Single Cell view: fixed a small problem with SED-ML export '[ci' 'skip].' The relative path of a local file $'wasn\342\200\231t' always correct. commit 3789169ddaf7b89c604fe3ab524f94bd5a2b5360 Author: Alan Garny '' Date: Tue Sep 8 15:29:28 2015 +0200 Single Cell view: fixed a small problem with SED-ML export The relative path of a local file $'wasn\342\200\231t' always correct. commit 2cdc8ecefed5c77b521ddffa6bcf1d12292dd1df Author: Alan Garny '' Date: Tue Sep 8 14:55:56 2015 +0200 Single Cell view: swapped the position of the SED-ML export and Simulation Data export buttons '[ci' 'skip].' commit f0916bdbbdbacb539e5b99aa2a4074fda2300fa9 Author: Alan Garny '' Date: Mon Sep 7 09:58:13 2015 +0200 New snapshots. commit 5d94a8d11a589ab586ed7b05eba31ed75ffebe5a Merge: c51b7e5c2 818c342da Author: Alan Garny '' Date: Sat Sep 5 16:14:19 2015 +0200 Merge pull request '#741' from opencor/issue684 Single Cell view: can now export a basic simulation to SED-ML '(closes' '#684).' commit 818c342da7ce8a4ce0ddb4507f4dca02ee8da118 Author: Alan Garny '' Date: Sat Sep 5 15:44:02 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684).' commit bdfdfb96404c3903a3c95b6469601cb6d5cc804f Author: Alan Garny '' Date: Sat Sep 5 15:23:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8fee30ca38d0f0056d9090090e2d92f459ab7583 Merge: 5c607d6b6 c51b7e5c2 Author: Alan Garny '' Date: Sat Sep 5 15:10:37 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 5c607d6b6a0bf0d5527425fee50787634ae1890a Author: Alan Garny '' Date: Sat Sep 5 15:10:06 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit c51b7e5c256fc3faf46343427562378dc2987ad4 Author: Alan Garny '' Date: Sat Sep 5 11:06:10 2015 +0200 Some minor cleaning up '[ci' 'skip].' I cleaned up a bit too much in the last 'commit!' commit efead417cbf331041eaeed173222c085262e31f8 Author: Alan Garny '' Date: Sat Sep 5 10:31:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a1edf4887fd2a7518f053ee64b6753ea72bdae8b Author: Alan Garny '' Date: Sat Sep 5 10:29:19 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cdb3878bdb2473e26c12a39452ff6993be6bc898 Author: Alan Garny '' Date: Fri Sep 4 17:52:31 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit c1c99d2b1538b4c1993aa9b9b6eac6d8283f56b7 Author: Alan Garny '' Date: Fri Sep 4 17:23:55 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 6b6400b6d3dbf52d1a8a16dfc2940b1f300bf4ef Author: Alan Garny '' Date: Fri Sep 4 17:12:06 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' Hmm, we $'don\342\200\231t' actually need to add those namespaces. commit e4cadc4ed299397ed1cd0ea77a6a31d4af9ac41d Author: Alan Garny '' Date: Fri Sep 4 17:01:14 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 75cc96ec3132ef10f56ebee397b4bfe98bbed503 Author: Alan Garny '' Date: Fri Sep 4 14:01:50 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit db4ead126481cef8897e3bf0d7c08b6db938523f Author: Alan Garny '' Date: Fri Sep 4 13:43:55 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit f64bd71943b63a170bc36ca25de0cb5c071ab68d Author: Alan Garny '' Date: Fri Sep 4 13:32:51 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 6f27fa3f2629fafdedc2e84356e0dc61cf41900a Merge: 21b42147a 7ac310f68 Author: Alan Garny '' Date: Fri Sep 4 11:53:28 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 21b42147acc89101a34722ffd5154a504e82ad41 Author: Alan Garny '' Date: Fri Sep 4 11:53:17 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 7ac310f68b1d6b5a409bfe868c18a0b232ba1715 Author: Alan Garny '' Date: Fri Sep 4 11:51:48 2015 +0200 Single Cell view: fixed a problem with changing a 'graph'\''s' model not always refreshing the graph panel '(closes' '#740).' commit 15f0f46a44073cad16abed6a3f94e9db0fce6ac0 Author: Alan Garny '' Date: Fri Sep 4 11:51:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 68bd523e8051a433e23f81161509d8529d2e01af Author: Alan Garny '' Date: Thu Sep 3 17:01:13 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit e3d22b6557d8aa11a27055d45c72d8662676000c Merge: 142202cf3 20f313af1 Author: Alan Garny '' Date: Thu Sep 3 16:41:58 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 20f313af168237cfff7d5391ca229b30c3145958 Author: Alan Garny '' Date: Thu Sep 3 16:41:27 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 93e8d97168bb1c7768802524f88460c0aa026541 Author: Alan Garny '' Date: Thu Sep 3 15:40:48 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit 142202cf3796ec03f96657b59594993af4d49973 Author: Alan Garny '' Date: Thu Sep 3 15:13:15 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 3aaef571bb941e419f0d01e5626015be177deaaa Author: Alan Garny '' Date: Thu Sep 3 14:29:28 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 3922c6493d88601c23763a3708ba234ad4386f34 Author: Alan Garny '' Date: Thu Sep 3 14:28:41 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 4ec6759e0bffc287d79eb522d41fcf6fefc89266 Author: Alan Garny '' Date: Thu Sep 3 13:26:44 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit ba055f2a3db6da44d5de800efcf5c032b2b6890b Author: Alan Garny '' Date: Thu Sep 3 11:04:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ff8ae60baa9cd9642284875bb5ea8d24bc9d77fd Author: Alan Garny '' Date: Thu Sep 3 11:04:03 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 798a0cab75c5beb31f68650b376d1068fe60c4c2 Author: David Brooks '' Date: Thu Sep 3 17:38:22 2015 +1200 Updated translations file. commit 83194f383985a02bd6b8839b93044ffbf10f5ebb Author: David Brooks '' Date: Thu Sep 3 17:37:51 2015 +1200 Tweak layout of BioSignalML dialogs. commit b094dec1a5847f4da5a21b328c7e46e9eb547d27 Author: David Brooks '' Date: Thu Sep 3 17:11:17 2015 +1200 Add the ability to specify variables to save in a BioSignalML file. commit 86d5db04cdf785aa91fa969fa7c0317dc702c036 Author: David Brooks '' Date: Thu Sep 3 11:08:09 2015 +1200 Work for internationalising comment when saving to BioSignalML. commit 642838aa5e49348cbb3f4b9d396ec3e984f7dc89 Author: David Brooks '' Date: Thu Sep 3 11:05:38 2015 +1200 Update to use changes in pull request '#737' from opencor/issue736 Improved the use of file names throughout OpenCOR plugins '(closes' '#736).' commit 507a1b36bb7c678e2be2963d1a33d515a0bd4180 Merge: 0aed32a9e 4d201a5fc Author: David Brooks '' Date: Thu Sep 3 09:44:24 2015 +1200 Merge branch ''\''master'\''' into libbsml commit b6f24472b874af1076d4a7a46cb2a219310091ce Author: Alan Garny '' Date: Wed Sep 2 18:37:03 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 260df78a43de414b93d4146833ce0e3f446bc114 Author: Alan Garny '' Date: Wed Sep 2 18:30:37 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 007b5011f921ae0f6a7a731d5589113c32623cba Author: Alan Garny '' Date: Wed Sep 2 18:29:49 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit f0bac8e753be46c968dce1a0212e30e0441c3771 Author: Alan Garny '' Date: Wed Sep 2 18:16:54 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 577e58bec48f4eebddba2c92c7005b3184a4d027 Author: Alan Garny '' Date: Wed Sep 2 18:04:34 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 8a8b7bc64cbc21972e0906f686efbba60b1f4c80 Author: Alan Garny '' Date: Wed Sep 2 17:50:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ed00e723fae476c088504849c7460b3bcef8a799 Author: Alan Garny '' Date: Wed Sep 2 17:00:20 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 50d0bbb865704fb2707ad2b288df7e2578ad89fb Merge: 78bc90606 4d201a5fc Author: Alan Garny '' Date: Wed Sep 2 14:55:52 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 4d201a5fc6bdd90450b428559b569c92e1a9518f Author: Alan Garny '' Date: Wed Sep 2 14:54:58 2015 +0200 KaTeX: upgraded to version 0.5.1 '(closes' '#738).' commit 78bc90606c119370d4acdb43269c2a7ac0957906 Merge: 5cff9d027 ab9d0575f Author: Alan Garny '' Date: Wed Sep 2 14:36:15 2015 +0200 Merge branch ''\''master'\''' into issue684. commit ab9d0575f6d518b1ac01790881a997ca7fb4f60f Author: Alan Garny '' Date: Wed Sep 2 14:36:03 2015 +0200 Updated our SampleView plugin and its corresponding documentation. commit 5cff9d0275f04166ea877d2c8382854a07c07525 Merge: 9ca871bc4 802a026f8 Author: Alan Garny '' Date: Wed Sep 2 13:50:46 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 802a026f8a290423d74ef64d89f97cfbfda01b81 Merge: a9b4fc667 2d43610d3 Author: Alan Garny '' Date: Wed Sep 2 13:48:20 2015 +0200 Merge pull request '#737' from opencor/issue736 Improved the use of file names throughout OpenCOR plugins '(closes' '#736).' commit 2d43610d3e918c48e26c18cf936797f0e145595b Author: Alan Garny '' Date: Wed Sep 2 13:37:38 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit 49c696f452687e0e6cf50131a43f012552fcec6e Author: Alan Garny '' Date: Tue Sep 1 17:55:16 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit e4e771bfd26f7f116d2fd660924a2967874ae469 Author: Alan Garny '' Date: Tue Sep 1 17:54:18 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit 866aa6ba840643372339b767a97c01e9ce54bf9e Author: Alan Garny '' Date: Tue Sep 1 17:53:57 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit d2061652189e71efb4037c9b7d82b3ad9b647535 Author: Alan Garny '' Date: Tue Sep 1 17:16:52 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit 0893924a4dc22b3c357e265c04c3117e5133d922 Author: Alan Garny '' Date: Tue Sep 1 17:14:41 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit c6d491cd35451e35a618cca463ac235a378eda1f Author: Alan Garny '' Date: Tue Sep 1 17:04:32 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit f720aad579a6ac0e7bb52f30f769386275c61508 Author: Alan Garny '' Date: Tue Sep 1 16:48:17 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit 25f3b5b9ad6b2c93ebe101197ad4bd99833e065e Author: Alan Garny '' Date: Tue Sep 1 16:26:01 2015 +0200 Some work on improving the use of file names throughout OpenCOR plugins '(#736)' '[ci' 'skip].' commit 9ca871bc42c4a58b31826c13dd51c7e308d3cbdb Author: Alan Garny '' Date: Tue Sep 1 15:32:33 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 8818a4108e0f0da857e58d605ab9c3adff47ec6c Merge: 3b4806cc1 a9b4fc667 Author: Alan Garny '' Date: Tue Sep 1 11:23:44 2015 +0200 Merge branch ''\''master'\''' into issue684. commit a9b4fc667eba561a3300265e99bebb15ff501d65 Author: Alan Garny '' Date: Tue Sep 1 11:22:49 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 0aed32a9ef00d70b7035b1c7c2ad4d3ce6f250b4 Author: David Brooks '' Date: Fri Aug 28 19:32:57 2015 +1200 Update '`typedobject`' library -- statically link libraptor... commit 50460fca112a84585db56f59c11925585d942238 Author: David Brooks '' Date: Tue Aug 25 19:22:08 2015 +1200 Update libraries. commit 45d03b874a360f97d352d443732112ba5bf7680e Author: David Brooks '' Date: Tue Aug 25 16:39:14 2015 +1200 We need to specify a full URI for the 'recording'\''s' clock. commit 918639b2d4cd1d9aa0a5e637566827fa9e6eb109 Merge: 6dea6578b 528c65686 Author: David Brooks '' Date: Tue Aug 25 11:45:11 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 6dea6578bff0f6db5bfce57068d3815658791070 Author: David Brooks '' Date: Tue Aug 25 11:34:51 2015 +1200 Save 'recording'\''s' duration as metadata. commit e29e17a1c8a822d1b4f4baa9216cec649c4b93dd Author: David Brooks '' Date: Tue Aug 25 11:34:11 2015 +1200 Use full URIs for signals. commit 818ad62fc8dcc3d5847cc47a7268aab7b32c30d1 Author: David Brooks '' Date: Tue Aug 25 10:49:59 2015 +1200 Update '`typedobject`' and '`biosignalml`' libraries. commit 528c656860015e5595cbdc793e8263f402f60b89 Author: Alan Garny '' Date: Sun Aug 23 12:55:45 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 1f50d39d463adc4ca3760ac30c260bc094c7d2b6 Author: Alan Garny '' Date: Sun Aug 23 12:40:16 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 52a75b351d6e2f8d2061d7bfff922eb1221f8af7 Author: David Brooks '' Date: Sun Aug 23 14:26:51 2015 +1200 Fix 'typo!' commit 3b4806cc117621bbe8f78bb91e5b1f28a42a7a8e Merge: a2856f472 9e98fe8e7 Author: Alan Garny '' Date: Sat Aug 22 15:49:12 2015 +0200 Merge branch ''\''master'\''' into issue684. commit a2856f472a1d93ccc16566ade036a33795f93a2e Author: Alan Garny '' Date: Sat Aug 22 15:47:30 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit bc20cbf2ba77631cf34ec3d08895260363a629a3 Author: Alan Garny '' Date: Sat Aug 22 15:43:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 9e98fe8e76df1ae8d8d1a97af620d5e4b42d3d92 Author: Alan Garny '' Date: Sat Aug 22 01:53:19 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9b7df499a515e79e52483bbb89456388bafebd8d Merge: edf45594f acdabc28d Author: Alan Garny '' Date: Fri Aug 21 20:18:42 2015 +0200 Merge branch ''\''master'\''' into issue684. commit acdabc28d8130fb98529edb3e5db86ce1aba5c4f Merge: 53c4310ec 91a32900b Author: Alan Garny '' Date: Fri Aug 21 20:10:22 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 53c4310ec35c3ea5b70ae8802f81db8a414bd56c Author: Alan Garny '' Date: Fri Aug 21 20:10:04 2015 +0200 Some minor cleaning up and refactoring '[ci' 'skip].' commit edf45594fd271c2f0229c37e884ced3b47ba2b06 Author: Alan Garny '' Date: Fri Aug 21 18:50:36 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ad7004a9e4c1c2e4fcd291d44be6ed7467e70a6a Author: Alan Garny '' Date: Fri Aug 21 18:42:16 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit b61fe414f3c815bbb3ae8e501877ab36efdd9bd0 Author: Alan Garny '' Date: Fri Aug 21 18:22:22 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit fe70991eb7cbed263575ba61f4cc18f880a7428c Author: Alan Garny '' Date: Fri Aug 21 17:08:36 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 21c9e67fc4e2bb66ad719eeef36e766cf1c1da72 Author: Alan Garny '' Date: Fri Aug 21 16:52:36 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 872799b988b6ccc5a16b2b1e2dbff8be2516986e Author: Alan Garny '' Date: Fri Aug 21 16:38:29 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 72021b317a35973ec67e810054ffc2f0384ebf84 Merge: 496851922 91a32900b Author: Alan Garny '' Date: Fri Aug 21 16:06:49 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 91a32900bcff80959d9b4d8e2a0eaf1c64aeb05b Author: Alan Garny '' Date: Fri Aug 21 16:06:37 2015 +0200 Single Cell view: cleaned up some DAE-related code '[ci' 'skip].' We used to explicitly check for the IDA solver. Thank god, we have only one DAE solver at the moment, but $'still\342\200\246' commit 4968519221a3c29f256afc2fe14da130e3802592 Author: Alan Garny '' Date: Fri Aug 21 15:45:45 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 2e3cb045e23088cf5851dbcab75ecf692be06804 Merge: 4eadad0af 9c6cebdd8 Author: Alan Garny '' Date: Fri Aug 21 13:57:54 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 9c6cebdd85c10af5f0a3fad9aead67c5e7f51d9c Author: Alan Garny '' Date: Fri Aug 21 13:57:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f8118406cc6cd05a3ae9bb06dc4168adf3af786 Author: Alan Garny '' Date: Fri Aug 21 13:20:25 2015 +0200 Single Cell view: fixed an issue with editing a model parameter making the GUI flash '(closes' '#733).' commit a4ad2b20061c108440e3dd7a0363c77b65ff1e68 Author: Alan Garny '' Date: Fri Aug 21 13:19:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4eadad0af13aed572693c9bb1b23856c86694844 Merge: 5a4431197 558d5faf0 Author: Alan Garny '' Date: Thu Aug 20 15:05:24 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 5a4431197920556bb590a0476f092ee43e563bbd Author: Alan Garny '' Date: Thu Aug 20 15:05:16 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 558d5faf00e03bfc69d5722cf884d663b703b65c Author: Alan Garny '' Date: Thu Aug 20 14:57:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a84783b407f3579162e5642f9c88bb4f972fc56c Author: Alan Garny '' Date: Thu Aug 20 14:39:11 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit d6fdb56a56a8ca13ca090bd05a7dad8b4d800142 Author: Alan Garny '' Date: Thu Aug 20 14:31:39 2015 +0200 Slight update to the developer documentation following the release of Qt Creator 3.5.0 '[ci' 'skip].' commit 9166deea224280cfc017f3bf0300c3cd4509c7fb Author: Alan Garny '' Date: Thu Aug 20 14:12:45 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 47ff38808abc55d1ca1627e476a3d1e24e99fc91 Author: Alan Garny '' Date: Thu Aug 20 11:09:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b8261ecd40ea1465368e2f8ca2943cfa419fa8be Author: Alan Garny '' Date: Thu Aug 20 10:50:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 8117e18a952e05b1a9dc614081c6937567dc10ad Merge: c35dd440f 886424eb4 Author: David Brooks '' Date: Thu Aug 20 11:38:37 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 92cf1154820f733b04fecf8df84b1737efc0ac49 Author: Alan Garny '' Date: Wed Aug 19 17:25:19 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 9ee40a28501578e74da4bdc5fa9fc65765a4f1b3 Author: Alan Garny '' Date: Wed Aug 19 16:23:01 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 6f6a6fbf12918407fc5cca92c22f6b8800e8eb2e Author: Alan Garny '' Date: Wed Aug 19 15:22:27 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 886424eb4d59bc684c1e7c67a8c9a3d3bc5af53f Author: Alan Garny '' Date: Wed Aug 19 13:25:32 2015 +0200 CellML tools: exporting CellML 1.0 models should default to different name '(closes' '#732)' '[ci' 'skip].' commit 9a94b9abe9fe2deed23c677fd9c9eb400f9f4cea Author: Alan Garny '' Date: Wed Aug 19 13:23:21 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 6bd6fc3ce25d126385ce7baf9ce5cf44aca9ac59 Merge: c7d30ffdd ce4f8c55f Author: Alan Garny '' Date: Tue Aug 18 18:40:36 2015 +0200 Merge branch ''\''master'\''' into issue684. commit ce4f8c55f0f47705928d75f3bf23f5c04f3365f4 Author: Alan Garny '' Date: Tue Aug 18 18:40:25 2015 +0200 Some minor refactoring. Created the 'fileTypes()' method in the Core plugin to convert and return as a string some file types, using some MIME types, if needed. commit c7d30ffdd589235b2028a9c29767497aa88a7701 Author: Alan Garny '' Date: Tue Aug 18 17:21:04 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit f0b6fbbe9391902e5001f63cfe3bc8830278387d Merge: 0dc8c0dc3 c4ca384ab Author: Alan Garny '' Date: Tue Aug 18 17:17:18 2015 +0200 Merge branch ''\''master'\''' into issue684. commit c4ca384ab1e67c57e40fd6fcdebfb514784adae6 Author: Alan Garny '' Date: Tue Aug 18 17:15:45 2015 +0200 Some minor refactoring. Created the 'fileTypes()' method in the Core plugin to convert and return as a string some file types, using some MIME types, if needed. commit 6709a2e2e84ec31bf2fb4479b7aae0131ef5c218 Author: Alan Garny '' Date: Tue Aug 18 17:06:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 0dc8c0dc3e40d90a64e2732d827f29d249485ed3 Merge: b16088296 69eb990c4 Author: Alan Garny '' Date: Tue Aug 18 16:24:37 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 69eb990c4c025cd5f8fdb57c692e62d6d421bc4d Author: Alan Garny '' Date: Tue Aug 18 15:18:47 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b1608829637ae2dc3170e2b8b401b10e277baa3b Merge: 490db6d00 bb45bdc45 Author: Alan Garny '' Date: Tue Aug 18 15:15:53 2015 +0200 Merge branch ''\''master'\''' into issue684. commit bb45bdc45e0695545006eaee5b3d12a7348007c6 Author: Alan Garny '' Date: Tue Aug 18 15:15:15 2015 +0200 CellML tools: exporting CellML 1.0 models should default to different name '(closes' '#732).' commit d28ae83a26e6d2a14420577ebf118be425d47b6b Author: Alan Garny '' Date: Tue Aug 18 13:37:46 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 69e52a40bb3f32258fcbbd3043564dde04d40299 Author: Alan Garny '' Date: Tue Aug 18 13:34:28 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 81e117f99ac98c5264adcd4969bb1742c93318e1 Author: Alan Garny '' Date: Tue Aug 18 11:22:48 2015 +0200 Oops, forgot to import/export 'Core::shortVersion()' and 'Core::version()' on Windows '[ci' 'skip].' commit c35dd440fce35ea830d91cb8124a832be464fe12 Author: David Brooks '' Date: Tue Aug 18 10:42:46 2015 +1200 Tidy up. commit f5f5b4f70e6e81b58fa053769bc90ddbec920d95 Author: David Brooks '' Date: Tue Aug 18 10:42:10 2015 +1200 Use file name as the 'recording'\''s' 'URI;' unit URIs are based in the model used. commit f64c129a37b2ec69e3db9fa04ba5d2304598a1b9 Author: David Brooks '' Date: Tue Aug 18 10:40:10 2015 +1200 Give 'recording'\''s' provenance as a comment. commit f4c7c45ad87a10bb758062fe9ff1d9c2d4ca5848 Author: David Brooks '' Date: Tue Aug 18 09:24:46 2015 +1200 Use updated DataStore interface. commit b24b5ab9a1d63a1d5d8a42029f63d86f542cddae Merge: b6fe50816 652a975f0 Author: David Brooks '' Date: Tue Aug 18 08:53:13 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 652a975f0a7c6c5854e6377b10dcda99427084ea Author: Alan Garny '' Date: Mon Aug 17 19:48:50 2015 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 9de2a01098cec192ccd4a70d78a7fb62a45523d7 Merge: 04829e5b0 7a65f490e Author: Alan Garny '' Date: Mon Aug 17 19:30:30 2015 +0200 Merge pull request '#731' from opencor/issue730 Solver: removed the CoreSolver plugin and moved its relevant classes to SolverInterface '(closes' '#730).' commit 7a65f490e9d1755e4979f04954d16b99e8e65f74 Author: Alan Garny '' Date: Mon Aug 17 18:51:41 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface '(#730).' commit 31dc95c6743681dfdcba7c26bedc5a7585dd3629 Author: Alan Garny '' Date: Mon Aug 17 18:45:14 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface '(#730).' commit d30c74a862a8045654c96fb9cc817c7759764317 Author: Alan Garny '' Date: Mon Aug 17 18:44:11 2015 +0200 Solver: some work on removing the CoreSolver plugin and moving its relevant classes to SolverInterface '(#730).' commit 04829e5b0ea86078906ad40288bfe31708c11466 Author: Alan Garny '' Date: Mon Aug 17 17:50:41 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3145a071431474bb063392176c1775dc9010412e Author: Alan Garny '' Date: Mon Aug 17 17:16:15 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit c2fe66c0acf30d2e13f94d93a3cdae56915faac3 Merge: e2c7a2ece 1f0f46411 Author: Alan Garny '' Date: Mon Aug 17 17:01:00 2015 +0200 Merge pull request '#729' from opencor/issue728 Data store: removed the CoreDataStore plugin and moved the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface '(closes' '#728).' commit 1f0f4641141a17eb68bdb482183fe2b8821fa8e2 Author: Alan Garny '' Date: Mon Aug 17 16:31:25 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface '(#728).' commit 98fbbe4ffab4c4ea7e3f160be80649c6f02f5080 Author: Alan Garny '' Date: Mon Aug 17 16:26:43 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface '(#728).' commit c2db257429a9d35a6c6b6b6ff4f8e6acedbcf386 Author: Alan Garny '' Date: Mon Aug 17 16:22:06 2015 +0200 Data store: some work on removing the CoreDataStore plugin and moving the CoreDataStore, DataStoreExporter and DataStoreVariable classes to DataStoreInterface '(#728).' commit e2c7a2ecee314d78d2755bcc2cf7b3a0a7ad87ef Author: Alan Garny '' Date: Mon Aug 17 15:34:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3bc37e6a5410430868028a6260a074d34df08f54 Author: Alan Garny '' Date: Mon Aug 17 14:49:48 2015 +0200 Made the '(short)' version of OpenCOR available to plugins '(closes' '#727).' commit d5e4f4588609618c55d8dbe633e910606293d538 Author: Alan Garny '' Date: Mon Aug 17 13:30:09 2015 +0200 Data store interface: replaced 'dataStoreExporterInstance()' with 'new/deleteDataStoreExporterInstance()' '(closes' '#717).' Allow an implementation of 'deleteDataStoreExporterInstance()' to modify a $'plugin\342\200\231s' properties. commit b6fe50816b84390fbcc1efab8c4e4ef263040f71 Author: David Brooks '' Date: Thu Aug 13 11:37:46 2015 +1200 We 'don'\''t' yet have any tests defined for BioSignalMLAPI so 'don'\''t' try to build them... commit c643cc53b436d7939c3bca03a924615a29a5a15c Author: David Brooks '' Date: Wed Aug 12 14:47:42 2015 +1200 Add BioSignalML binaries for 64-bit release mode builds. commit 3ee2119e65ff09a085a584ed63687bf4cbb0dc40 Author: David Brooks '' Date: Wed Aug 12 14:46:06 2015 +1200 Add missing export 'header;' support both Visual C '(WIN32)' and gcc in the one file. commit c526000913ad10d0a8508db6c927a3efb399b14a Author: David Brooks '' Date: Tue Aug 11 21:18:13 2015 +1200 Improve display of 'filename;' ensure dialog has keyboard focus after entering file name. commit ef5e57f980dd51b9ad58333a589180d5f67db7bc Author: David Brooks '' Date: Tue Aug 11 18:22:42 2015 +1200 Tidy up. commit f6b26692c2b099666772a3d9e69f42c70d99f2ab Author: David Brooks '' Date: Tue Aug 11 18:21:55 2015 +1200 Save author in BioSignalML recording. commit ab1fcff5f0bf3adba13fef6e84ec6666564532a3 Author: David Brooks '' Date: Tue Aug 11 16:44:06 2015 +1200 Updates to prompts. commit b71dd6d8f375ad31c90bd9dd2f27257d0681ac04 Author: David Brooks '' Date: Tue Aug 11 16:43:15 2015 +1200 Tidy up deletion of exporters. commit 5fcefe68928d17b4d62f491fd74a9a5bc5d76e0a Author: David Brooks '' Date: Tue Aug 11 16:42:19 2015 +1200 Add BioSignalMLAPI plugin to retrieve pre-built libraries. commit ac06b35cf2e169920b0c40d52900fc47a2974d36 Author: David Brooks '' Date: Tue Aug 11 16:38:30 2015 +1200 Allow location of binary file downloads to be specified. commit b70f9b3fe31a2950ee0ab682a358571e098fa3cb Merge: 2c853aab4 8dcb719ae Author: David Brooks '' Date: Tue Aug 11 09:10:34 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 8dcb719ae62594b80fca3fc9a0c0ee5517f11a6c Author: Alan Garny '' Date: Mon Aug 10 14:42:03 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1b1367bee14e4e2f49e3b4c381f590ab5db8b59d Author: Alan Garny '' Date: Mon Aug 10 14:41:37 2015 +0200 Data store interface and CoreDataStore plugin: made it easier to delete an instance of a data store exporter that has an id '(closes' '#726).' commit 60a6b7045d156037d3568f5a5b06aa47c0c16f17 Merge: 89212aafa dd7f7171c Author: Alan Garny '' Date: Mon Aug 10 13:56:06 2015 +0200 Merge pull request '#725' from opencor/issue723 SUNDIALS: upgraded to version 2.6.2 '(closes' '#723).' commit dd7f7171c2305a9b29f6eef4f6bd6dc8ca58a9ee Author: Alan Garny '' Date: Mon Aug 10 13:32:04 2015 +0200 SUNDIALS: some work towards upgrading to version 2.6.2 '(#723).' commit 469a409104883d2b72e7914ad8dcdbd29900dab0 Author: Alan Garny '' Date: Mon Aug 10 13:17:13 2015 +0200 SUNDIALS: some work towards upgrading to version 2.6.2 '(#723)' '[ci' 'skip].' commit 2c853aab4a812609ed0ba8265865911e356058db Merge: b80567914 89212aafa Author: David Brooks '' Date: Mon Aug 10 22:46:40 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 89212aafad9ca699f8f13f02801d9283b4314e8e Merge: 0e517d5b0 a3c8a9e3e Author: Alan Garny '' Date: Mon Aug 10 11:54:04 2015 +0200 Merge pull request '#724' from opencor/issue722 libgit2: upgraded to version 0.23.1 '(closes' '#722).' commit a3c8a9e3ef9c0fd6626d67bd3ffada26452df487 Author: Alan Garny '' Date: Mon Aug 10 11:51:51 2015 +0200 libgit2: some work towards upgrading to version 0.23.1 '(#722).' commit d0b1c1468e1b43e5ee379402b030be1457c7b114 Author: Alan Garny '' Date: Mon Aug 10 11:37:56 2015 +0200 libgit2: some work towards upgrading to version 0.23.1 '(#722)' '[ci' 'skip].' commit 490db6d000fc52a8a6005d243f7d776cdf580a4a Merge: 1f96e5f72 0e517d5b0 Author: Alan Garny '' Date: Mon Aug 10 10:52:16 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 0e517d5b052b99805650edb17fa43b5c4e17079d Author: Alan Garny '' Date: Sun Aug 9 17:07:23 2015 +0200 Single Cell view: reverted the fact that direct painting should occur immediately '(see' issue '#671' and '#710)' '[ci' 'skip].' commit 0158d95aa298386b3358ff0747bfc4c7fa04b6f8 Author: Alan Garny '' Date: Sun Aug 9 14:58:04 2015 +0200 New snapshots. commit 067530b4917dd1a6a81f00ac4edba67ca63999ec Author: Alan Garny '' Date: Sun Aug 9 14:41:22 2015 +0200 Some minor cleaning up '[ci' 'skip].' Replaced a dynamic_cast with a qobject_cast. commit 283716391a30fd6655edd1a82a2cf7b2ae1ce988 Author: Alan Garny '' Date: Sun Aug 9 14:07:44 2015 +0200 Some minor cleaning up '[ci' 'skip].' Replaced some $'dynamic_cast\342\200\231s' with some $'qobject_cast\342\200\231s.' commit fd2e1250f3adbf17788e616d60abb115dbb591df Author: Alan Garny '' Date: Sun Aug 9 13:45:03 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 93fe8d43c535e17da40488fb4a16c485229d000e Author: Alan Garny '' Date: Sun Aug 9 13:17:09 2015 +0200 Some minor cleaning up related to issue '#721' '[ci' 'skip].' commit d913f5d44126edbcc76a30be4f39abb3e558930f Author: Alan Garny '' Date: Sun Aug 9 13:10:37 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e398fb88488c3ea605dc8d005a2bb3e2d78f09f Author: Alan Garny '' Date: Sun Aug 9 13:01:55 2015 +0200 CellML-based editing view: fixed an issue that prevented the creation of a new CellML file on Linux '(closes' '#721).' commit ec61cae7edf628c5f3392a190760660f549cd7a5 Author: Alan Garny '' Date: Sun Aug 9 12:30:24 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit c8316db7f7b057aacc4956fa6d6ba1ef65ae06cf Author: Alan Garny '' Date: Sun Aug 9 12:14:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' Removed some unneeded $'const_cast\342\200\231s.' commit 1ccb534bd47f3d0d47291948e292d5c9585c13b2 Author: Alan Garny '' Date: Sat Aug 8 21:43:51 2015 +0200 QScintillaWidget: show special Unicode characters '(closes' '#709).' commit 3d0a353aad7da63ee962067a6a17e51ed8ade939 Author: Alan Garny '' Date: Sat Aug 8 14:07:24 2015 +0200 CellML Text view: fixed a problem with the wrong syntax highlighting being used in a particular case '(closes' '#720).' commit b8056791405999623b2a6b9195723107b25e88cf Author: David Brooks '' Date: Sat Aug 8 12:51:56 2015 +1200 First version of '"Save' as 'BioSignalML"' is almost all working. commit 18bad9f2b36dc53d48afa8950de9be2e213c39fc Author: Alan Garny '' Date: Fri Aug 7 18:55:07 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit affef5e73f7c5b7a8ec48ddd763838fcb26af119 Merge: 84dcc9e07 4c2009bd6 Author: Alan Garny '' Date: Fri Aug 7 15:30:07 2015 +0200 Merge pull request '#719' from opencor/issue714 CellML Text view: fixed an issue with pasting some Unicode characters potentially crashing OpenCOR '(closes' '#714).' commit 4c2009bd6afd1871f99a24178fa7966248630dc2 Author: Alan Garny '' Date: Fri Aug 7 15:24:16 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714).' commit 41990afe8f594bd4b46059e35ebfef699a4db7d3 Author: Alan Garny '' Date: Fri Aug 7 15:22:17 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714).' commit 9f491338e98192e3daaa57f77e507874567491c9 Author: Alan Garny '' Date: Fri Aug 7 15:05:16 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714)' '[ci' 'skip].' commit 31123cbea0555a839449b36e952e5d26447bfcda Author: Alan Garny '' Date: Fri Aug 7 13:00:02 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714)' '[ci' 'skip].' commit 0bb0051a995639570cb8b1abf1c7cb7c54e74b8f Author: Alan Garny '' Date: Fri Aug 7 12:44:54 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 46451604779f8a91057e77e8bef2be1f92cf3a4a Author: Alan Garny '' Date: Fri Aug 7 11:49:33 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714)' '[ci' 'skip].' commit b69b891c887ba7f629cce61362bd54d569cc742e Author: Alan Garny '' Date: Fri Aug 7 11:22:56 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714)' '[ci' 'skip].' commit bb1e5f816ed85364a33da1447a2c4d7641979544 Author: Alan Garny '' Date: Fri Aug 7 11:06:30 2015 +0200 CellML Text view: some work towards fixing an issue with pasting some Unicode characters potentially crashing OpenCOR '(#714)' '[ci' 'skip].' commit 84dcc9e0738eb45684ffe7a29df83513412c3dc6 Author: Alan Garny '' Date: Fri Aug 7 10:55:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 068adaa8240c513c85f544d325eceea1fe02db62 Author: David Brooks '' Date: Fri Aug 7 12:10:23 2015 +1200 '`PluginInfo`' needs the 'plugin'\''s' category, not the 'plugin'\''s' name. commit 687cc3adb80449d6ff4c4714e590384f3f44b1fa Merge: 30c0f90f3 ccb72d1cc Author: David Brooks '' Date: Fri Aug 7 12:08:26 2015 +1200 Merge branch ''\''master'\''' into libbsml commit ccb72d1cc38e7419c0d6ef235f91b01cde5075d0 Author: Alan Garny '' Date: Fri Aug 7 00:05:33 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e47f1752c81a92e74d3408d90c440127fb5b61ed Author: Alan Garny '' Date: Thu Aug 6 23:40:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 60cde4dfbe5b5a1d4e0b1b379a51121d5de033e7 Merge: ee768ff10 3db0818d3 Author: Alan Garny '' Date: Thu Aug 6 15:12:05 2015 +0200 Merge pull request '#718' from opencor/issue715 Fixed an issue with pre-built OS X libraries having hard-coded paths '(closes' '#715).' commit 3db0818d3bff2392860f793769370a336c547570 Author: Alan Garny '' Date: Thu Aug 6 14:50:18 2015 +0200 Some work on pre-built OS X libraries have hard-coded paths '(#715).' commit d12a4dd557eabfb095eb2ec28f009ac2887225eb Author: Alan Garny '' Date: Thu Aug 6 14:11:54 2015 +0200 Some work on pre-built OS X libraries have hard-coded paths '(#715).' commit ee768ff10442557c384ce3809f2b46db910258d8 Author: Alan Garny '' Date: Thu Aug 6 12:06:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e5389f9bd3a7942ddce8bd24c271e37b9c19067d Author: Alan Garny '' Date: Thu Aug 6 11:42:50 2015 +0200 Travis CI: some minor cleaning up. Moved down a bit where we set PROJECT_BUILD_DIR so that when we do, we know that the build will go ahead '(i.e.' no more risk of getting a FATAL_ERROR message. commit 2bed31eca0871548bd3b64281cd8e9361689c83e Author: Alan Garny '' Date: Thu Aug 6 10:55:07 2015 +0200 Travis CI: some minor cleaning up. commit 6516b254a22834d3ac023ae5287e18c8c0bee5e5 Author: Alan Garny '' Date: Thu Aug 6 10:35:11 2015 +0200 Travis CI: reverting the previous commit. Argh, I had forgotten that the PPA we use on Travis CI $'doesn\342\200\231t' include the ICU $'libraries\342\200\246' commit 337e79ff18de4cc018b2cfecaa62bc1bfe36345c Author: Alan Garny '' Date: Thu Aug 6 10:15:31 2015 +0200 Travis CI: some minor cleaning up. We can use Qt 5.4.2 on Linux on Travis CI, so no need to use an older version of the ICU files. commit 68b07455e7aeba2e2934f9231aed7a684d727dd9 Author: Alan Garny '' Date: Thu Aug 6 09:41:22 2015 +0200 Data store interface: replaced 'dataStoreExporterInstance()' with 'new/deleteDataStoreExporterInstance()' '(closes' '#717).' commit da4b8c2358ed3c7338a90258e3e50e64496b1523 Author: Alan Garny '' Date: Thu Aug 6 09:38:33 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7367f0055287ec2b83a25d5780e5b54c5e89e933 Author: Alan Garny '' Date: Thu Aug 6 08:39:20 2015 +0200 Plugins window: fixed an issue with a plugin with an unknown category resulting in a crash '(closes' '#716).' commit 30c0f90f3d311357684a71727f129feaae5df3fd Merge: 9000cde82 61a64416a Author: David Brooks '' Date: Thu Aug 6 15:10:11 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 61a64416a60c42ce41849d9fbf0fd1f916ebabb3 Author: Alan Garny '' Date: Thu Aug 6 00:30:07 2015 +0200 CSV data store: made sure that whoever uses a data store explorer instance actually frees it afterwards '(closes' '#713).' commit 07eb5d9738652a86d16a32a57e0a8af8400491ba Author: Alan Garny '' Date: Thu Aug 6 00:26:49 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d0f130249164905953da5b4711a1e5f970ae320 Author: Alan Garny '' Date: Thu Aug 6 00:10:29 2015 +0200 CSV data store: made sure that whoever uses a data store explorer instance actually frees it afterwards '(closes' '#713).' commit 6432ed2216579cb0a1735ebfb72c8033fbb81ead Author: Alan Garny '' Date: Wed Aug 5 23:43:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6d28084f7e88adb4d9407868cbe1ec6d279f2856 Author: Alan Garny '' Date: Wed Aug 5 15:44:34 2015 +0200 Make sure that we can, once again, test things from within Qt Creator, Xcode, as well as from the command line '[ci' 'skip].' commit 92e0639ced7469af1f437c4836ec1f90b0374a6d Author: Alan Garny '' Date: Wed Aug 5 09:50:35 2015 +0200 Make sure that we can, once again, test things from within Qt Creator '[ci' 'skip].' commit 9000cde8224a130c5fdea3eafc9b2c5e39e66ca8 Author: David Brooks '' Date: Wed Aug 5 16:24:47 2015 +1200 Add a user dialog to capture BioSignalML metadata. commit 3ac4c603dc62aac7bdac9beb4ec59e7c094267ef Author: David Brooks '' Date: Wed Aug 5 16:23:31 2015 +1200 Use correct method names when getting a data 'store'\''s' '`uri`' and '`id`.' commit 316221238d493471f1a2cbea43e2dd56cb86d6c5 Author: Alan Garny '' Date: Tue Aug 4 22:05:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d957b44cd3b7ab1817ab49a0ca7014f5449243bb Author: Alan Garny '' Date: Tue Aug 4 21:04:07 2015 +0200 Make sure that we can, once again, test things from within Qt Creator '[ci' 'skip].' After some work on getting things to work with Xcode, we cleaned some CMake code up and well... we 'shouldn'\''t' 'have!' commit d8d8c082fd0b9bf16ad2284d48e484d082a45e54 Author: Alan Garny '' Date: Tue Aug 4 15:20:26 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit a24c364cb7b1b0a18639ea219da09498b0214c15 Merge: 8811b1e18 7d21505fc Author: Alan Garny '' Date: Tue Aug 4 10:48:46 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7d21505fc17706fa3dcc5b74f5faefc2071654d7 Author: Alan Garny '' Date: Tue Aug 4 10:48:20 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 8811b1e184040125160340cc966a824cd8c8fe9e Merge: 23763e489 b38834cfb Author: Alan Garny '' Date: Tue Aug 4 10:18:41 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit b38834cfb3f056c483b864b9f8a2a2863f2fff73 Author: Alan Garny '' Date: Tue Aug 4 10:11:41 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710).' commit 34833a4936da45008008e5fc5610d53b950b036a Author: Alan Garny '' Date: Tue Aug 4 10:03:06 2015 +0200 Travis CI: trying to understand why the release version 'doesn'\''t' work on Linux. commit 30966c4954237b6e196496da737304f4438bb818 Author: Alan Garny '' Date: Tue Aug 4 10:01:47 2015 +0200 Travis CI: trying to understand why the release version 'doesn'\''t' work on Linux. commit c40d1ffe90755f4f2db6a693cdb99985d2e27f29 Author: Alan Garny '' Date: Tue Aug 4 10:00:29 2015 +0200 Travis CI: trying to understand why the release version 'doesn'\''t' work on Linux. commit b725912a1270ac588961cf6294417bf1ba496ba2 Author: Alan Garny '' Date: Mon Aug 3 19:39:59 2015 +0200 Create both a Users and Developers mailing list '(closes' '#711).' commit 54df596bd732aa508b3ff76061dd83b676fd1a46 Author: Alan Garny '' Date: Mon Aug 3 19:13:18 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710).' commit 5cd4d31c6035d1e9bb5c9ae46ec10d901301e8dc Author: Alan Garny '' Date: Mon Aug 3 18:52:40 2015 +0200 Travis CI: trying to understand why the release version 'doesn'\''t' work on Linux. commit f453cb3653c3b35e87072a6ad86d5006b06acacb Author: Alan Garny '' Date: Mon Aug 3 18:24:48 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710).' commit d9babfa47c4c901cd3908d10c9aad3b805e311f2 Author: Alan Garny '' Date: Mon Aug 3 18:22:06 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710).' commit 74d4ff8cffa54e4db80b26da648f7c2f0353f132 Author: Alan Garny '' Date: Mon Aug 3 18:18:04 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710).' commit e241adf3e079d1ff439c3b0bfd7330832c01afde Merge: 9cf0ec734 e5ee5508b Author: Alan Garny '' Date: Mon Aug 3 17:02:11 2015 +0200 Merge pull request '#712' from opencor/issue710 Revert to Qt 5.4.2 '(closes' '#710).' commit e5ee5508b68b9285b1d66c81b342265aa0ceb10c Author: Alan Garny '' Date: Mon Aug 3 16:50:51 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit 05a67e3c388a5a256c7b603c6f9bcdd536ef2ea9 Author: Alan Garny '' Date: Mon Aug 3 16:48:49 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit 891ca66eaff314bd366b23953e67ebab1e988412 Author: Alan Garny '' Date: Mon Aug 3 14:16:52 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit 3f71c7baef347ab3eb57629461eea6e02f8437a0 Author: Alan Garny '' Date: Mon Aug 3 14:07:38 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit c0deea06931ffb88a914d7f6d8231e7ad54a0ede Author: Alan Garny '' Date: Mon Aug 3 14:00:46 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit 0fd0aed737a0279c3ab819ec5645eac19c74eb21 Author: Alan Garny '' Date: Mon Aug 3 13:50:51 2015 +0200 Some work towards reverting to Qt 5.4.2 '(#710)' '[ci' 'skip].' commit 9cf0ec73472e563c1bd2d8a9702220d95c8f4c29 Author: Alan Garny '' Date: Mon Aug 3 10:28:43 2015 +0200 Slight update to the downloads page '[ci' 'skip].' Added a message to warn people about using the latest snapshot. commit bddf5f534a4e55a842c9a32a0fbf121c91fded39 Author: Alan Garny '' Date: Mon Aug 3 09:55:18 2015 +0200 Slight update to the downloads page '[ci' 'skip].' Put the latest snapshot $'\342\200\230below\342\200\231' the latest official release since the latest snapshot is not yet in a state where we would recommend people using it. commit 23763e489c508eb04e327689016f10fadb33aecf Merge: 5c2920c65 555bda065 Author: Alan Garny '' Date: Fri Jul 31 20:48:50 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 1f96e5f72e866317fa6c57faa25d29a6c7a65054 Merge: 5b7b76dea 555bda065 Author: Alan Garny '' Date: Fri Jul 31 14:04:38 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 555bda06575b820c65af5398fa4eff763130c039 Author: Alan Garny '' Date: Fri Jul 31 13:44:39 2015 +0200 New snapshots. commit cda3a65368522c5783356bf9ad0bf1bad834059c Merge: 06259b417 32ff81915 Author: Alan Garny '' Date: Fri Jul 31 13:36:30 2015 +0200 Merge pull request '#708' from opencor/issue707 Qwt plugin: use the latest revision from the Qwt 6.1 branch '(closes' '#707).' commit 32ff81915a563cb25b97ea36e5a83f7b9991a34e Author: Alan Garny '' Date: Fri Jul 31 13:14:07 2015 +0200 Qwt plugin: use the latest revision from the Qwt 6.1 branch '(#707).' commit 5f9f2acd725fac1856ebd613087dc4717da761af Author: Alan Garny '' Date: Fri Jul 31 12:58:28 2015 +0200 Qwt plugin: some work towards using the latest revision from the Qwt 6.1 branch '(#707)' '[ci' 'skip].' commit 5c2920c65994430225cd9fe7f1e5cef2e4e81340 Merge: 5ed71b223 06259b417 Author: Alan Garny '' Date: Thu Jul 30 20:15:02 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 5b7b76dea837b16fc2a2d1139a45c5b61d61f736 Merge: 31ea5be5c 06259b417 Author: Alan Garny '' Date: Thu Jul 30 15:29:22 2015 +0200 Merge branch ''\''master'\''' into issue684. commit 06259b4172f019bfd0b57c45965b2fbd2296c9bb Author: Alan Garny '' Date: Thu Jul 30 15:21:32 2015 +0200 CellML API: updated to the latest snapshot '(closes' '#703).' commit 34dbcf0850218be624a724307b917d736bea2075 Author: Alan Garny '' Date: Thu Jul 30 11:21:26 2015 +0200 CellML support: only fully instantiate imports if needed '[ci' 'skip].' commit 79b8de6c3b21b23a5556ecc44abb79e4d0ffa875 Author: David Brooks '' Date: Thu Jul 30 15:18:31 2015 +1200 Changes for latest release from AG. commit 857f1b266318baa32be839724acef112b5a934ea Merge: b89457e32 5c93b5f00 Author: David Brooks '' Date: Thu Jul 30 14:41:03 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 5c93b5f00c34c1e538b683642432a440d248de8a Author: Alan Garny '' Date: Wed Jul 29 17:47:10 2015 +0200 Minor improvement to the way we show our busy widget '[ci' 'skip].' commit 467f5418702b3154863bcb89622b121628bf5615 Author: Alan Garny '' Date: Wed Jul 29 11:47:34 2015 +0200 Central widget: make sure we hide our busy widget if a remote open file fails '[ci' 'skip].' commit a5be294b0465384a6eca18057767cc806f3cca01 Author: Alan Garny '' Date: Wed Jul 29 11:30:19 2015 +0200 CMake: properly support CMake 3.2 and above '[ci' 'skip].' commit 107805877daa6c9a40c8e3f6af933ac910de9a22 Author: Alan Garny '' Date: Wed Jul 29 10:54:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5c12883ac7efb6543994e71f61c825a88dc15061 Author: Alan Garny '' Date: Wed Jul 29 10:24:35 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5ed71b2238efd0c2aa8752d24764057d320def50 Author: Alan Garny '' Date: Wed Jul 29 00:04:20 2015 +0200 Slight update to the developer documentation now that we require CMake 3.2 or above '[ci' 'skip].' commit dde4389d90d0a6cd8f06cbd1fabe8153a8557aec Author: Alan Garny '' Date: Tue Jul 28 18:46:52 2015 +0200 CMake: quiet some EXECUTE_PROCESS calls. This can, for example, be useful when using ccmake '(i.e.' no more $'\342\200\230messy\342\200\231' 'output).' commit 8748bb68328729c959118babcc5604d864d2705c Author: Alan Garny '' Date: Tue Jul 28 18:32:40 2015 +0200 Travis CI: use CMake 3.3.0 on Linux now that it is available. commit a43d605b9b13924c9954187f4a9fd57be821787d Author: Alan Garny '' Date: Tue Jul 28 18:32:11 2015 +0200 CMake: properly support CMake 3.2 and above '[ci' 'skip].' commit b95fb197f74a904473467539d156e09d15640d90 Author: Alan Garny '' Date: Tue Jul 28 17:26:23 2015 +0200 CMake: show some information messages only when requested '[ci' 'skip].' commit 883211e5a4ff9e7540ecdd467c28ead2d5f2fe16 Author: Alan Garny '' Date: Tue Jul 28 17:15:22 2015 +0200 CMake: hide some Qt-related variables '(useful' when using 'ccmake)' '[ci' 'skip].' commit 589e42103fa1af57c3c26dfabf77c211481480e3 Author: Alan Garny '' Date: Tue Jul 28 15:59:32 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4c3cab096c139994e33acdbcd332a0e786f074f5 Author: Alan Garny '' Date: Tue Jul 28 15:42:01 2015 +0200 CMake: cleaned up a bit the way we generate languages files '[ci' 'skip].' commit 31ea5be5cf6b8699e966e8f792a87ad2b6d170a3 Merge: 68b635fa7 6f98c6880 Author: Alan Garny '' Date: Mon Jul 27 13:52:37 2015 +0200 Merge branch ''\''master'\''' into issue684 commit 6f98c6880e4f41e082dc2f46b5626351ceaaecfa Author: Alan Garny '' Date: Mon Jul 27 13:50:39 2015 +0200 Some further work on adding a SED-ML Support plugin '(#686).' commit 7a889e97088fb2d1a4ea3ab2cc2a5c863e441e1d Author: Alan Garny '' Date: Mon Jul 27 13:44:50 2015 +0200 SEDML API: prevent some warnings on Windows when using the SED-ML API '[ci' 'skip].' commit 35959dbf3b44c1c8c02f6ac46d0d48093678697b Author: Alan Garny '' Date: Mon Jul 27 13:43:51 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 68b635fa79af8c5b80dedffc72881f670ee7f116 Author: Alan Garny '' Date: Mon Jul 27 13:39:42 2015 +0200 Merge branch ''\''master'\''' into issue684 commit c3123ea936819eb35d0fb05b891099702752510b Merge: 2ffa97505 5a307c752 Author: Alan Garny '' Date: Mon Jul 27 13:32:35 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 967e992cc8462eed683948d891d9b4d609724f23 Author: Alan Garny '' Date: Mon Jul 27 10:22:58 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 5a307c752f3773747fe1b6bd3cc7bb1b107b1aa8 Author: Alan Garny '' Date: Sun Jul 26 19:45:10 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 665e0ec0f886caa083bf6db8345345d364c63679 Author: Alan Garny '' Date: Sun Jul 26 18:23:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cbfb745022559d7e10f01bf57472f50c8be904e8 Author: Alan Garny '' Date: Sun Jul 26 17:05:24 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2ffa97505379b65f506a9df05cbd587268340d93 Merge: cf2408e52 a30b0c4af Author: Alan Garny '' Date: Sun Jul 26 15:42:41 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit a30b0c4af4d211496992450e5b925332a62b21c8 Author: Alan Garny '' Date: Sun Jul 26 15:37:55 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ea2d79140646e490d6cf2a1a6b0f86ab60ad87b5 Author: Alan Garny '' Date: Sun Jul 26 15:35:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a1d0183d1be108e6d292a840afe12580cee03bf2 Merge: 6f81a355b d53fb7220 Author: Alan Garny '' Date: Sun Jul 26 15:23:46 2015 +0200 Merged from master. commit cf2408e52e64944053a4bee4dd17bd662cc571bd Merge: a330c55df d53fb7220 Author: Alan Garny '' Date: Sun Jul 26 15:20:54 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d53fb7220a59441f899b55979d7cfe7979968537 Merge: 8b27681a9 f112d1353 Author: Alan Garny '' Date: Sun Jul 26 15:18:47 2015 +0200 Merge pull request '#700' from opencor/issues698-699 Plugins: 'don'\''t' rely on an enum to specify the category of a plugin '(closes' '#698).' LLVM: upgraded to version 3.6.2 '(closes' '#699).' commit f112d1353903d9947396905d7cc4951f8eda0cad Author: Alan Garny '' Date: Sun Jul 26 14:56:02 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin '(#698).' commit a330c55dfcad6ee658c04a95650143cd86e18e11 Merge: 6e19d0515 8b27681a9 Author: Alan Garny '' Date: Sun Jul 26 12:41:02 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3a2df1fb1ee2434e8174de4c1afaf1365d0e03f8 Author: Alan Garny '' Date: Sun Jul 26 12:29:51 2015 +0200 LLVM: some work on upgrading to version 3.6.2 '(#699)' '[ci' 'skip].' commit e0702e491658bd5da2254cdc94d85a51924425c5 Author: Alan Garny '' Date: Sat Jul 25 20:23:10 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin '(#698)' '[ci' 'skip].' commit 4ed039adc63c0b6759dfd2214731ee794a0c285a Author: Alan Garny '' Date: Sat Jul 25 20:21:15 2015 +0200 Plugins: some work on not relying on an enum to specify the category of a plugin '(#698)' '[ci' 'skip].' commit 45b91a31445b0b98d5fa0291a1682928ce99d230 Author: Alan Garny '' Date: Sat Jul 25 18:51:14 2015 +0200 LLVM: some work on upgrading to version 3.6.2 '(#699)' '[ci' 'skip].' commit 8b27681a96d0ed6504bb7eb5dfed503fe9528277 Author: Alan Garny '' Date: Sat Jul 25 13:33:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6f81a355b8e421204717b707c054d811fa51fc24 Author: Alan Garny '' Date: Sat Jul 25 12:30:33 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 1917b56eff3237db26a2817e323925f3bd81b064 Merge: 8a0752de9 385bea219 Author: Alan Garny '' Date: Sat Jul 25 12:24:19 2015 +0200 Merge branch ''\''master'\''' into issue684 commit 6e19d0515d5ea1164acd8cb74cc30937d951dd2b Merge: e977229f1 385bea219 Author: Alan Garny '' Date: Sat Jul 25 12:21:17 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 385bea2190ceae1787a7f798088b3eb9b48cb555 Merge: 1ab466401 e706c0bfb Author: Alan Garny '' Date: Sat Jul 25 12:19:44 2015 +0200 Merge pull request '#697' from opencor/issue690 PMR window: use gzip compression to retrieve data from the PMR '(closes' '#690).' commit e706c0bfb51d94d3274fa1d4edc7b581db828b66 Author: Alan Garny '' Date: Sat Jul 25 11:57:19 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690).' commit b1a7e19a2d719e31e0be0b4053a8a70a9724c0ff Author: Alan Garny '' Date: Sat Jul 25 11:55:46 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690).' commit 56cc6cada66a52e7a3599146d71ce814670e4721 Author: Alan Garny '' Date: Sat Jul 25 11:32:49 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690)' '[ci' 'skip].' commit f50b5b71687de1c41de425d497d24d255ac8da5b Author: Alan Garny '' Date: Sat Jul 25 10:20:57 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690)' '[ci' 'skip].' commit bd27579efe566ae462fa2fe0be9ba8589812873a Author: Alan Garny '' Date: Sat Jul 25 10:17:05 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690)' '[ci' 'skip].' commit 6f2c975380268ac9e2df3380feff5d01c654286c Merge: fe3e36680 1ab466401 Author: Alan Garny '' Date: Sat Jul 25 03:09:25 2015 +0200 Merged master '[ci' 'skip].' commit e977229f1207d217e8b4df0615b08755b2dfd513 Merge: 7ea95c39e 1ab466401 Author: Alan Garny '' Date: Sat Jul 25 02:50:35 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 1ab4664012d11651b3a33fea819e9f6259629fc5 Merge: b110ca1a6 5b6d555c4 Author: Alan Garny '' Date: Sat Jul 25 02:48:22 2015 +0200 Merge pull request '#696' from opencor/issue695 Added a zlib plugin '(closes' '#695).' commit 5b6d555c43231364a04458847ec97cfb086923d9 Author: Alan Garny '' Date: Sat Jul 25 02:26:34 2015 +0200 Some work on adding a zlib plugin '(#695).' commit d55a1d055a07c4d60f3f3833e91954b1cdf621dd Author: Alan Garny '' Date: Sat Jul 25 02:12:18 2015 +0200 Some work on adding a zlib plugin '(#695)' '[ci' 'skip].' commit bec73fad5371e015acca4db5bd9278cc57efb84c Author: Alan Garny '' Date: Sat Jul 25 02:06:23 2015 +0200 Some work on adding a zlib plugin '(#695)' '[ci' 'skip].' commit 77dd2e6f348a3e340fb58ed26fbcc614549069a0 Merge: 42e825894 b110ca1a6 Author: Alan Garny '' Date: Sat Jul 25 01:54:13 2015 +0200 Merge branch ''\''master'\''' into issue695 '[ci' 'skip].' commit b110ca1a6310c25d0cfb5766ffeb02c93e58eba7 Author: Alan Garny '' Date: Sat Jul 25 01:53:49 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 42e825894ae240399734691ed76245f9e5fdb97a Author: Alan Garny '' Date: Sat Jul 25 01:52:49 2015 +0200 Some work on adding a zlib plugin '(#695)' '[ci' 'skip].' commit bd68dee3e0e0de8d214549e479830e888ae120aa Author: Alan Garny '' Date: Sat Jul 25 01:35:01 2015 +0200 Some work on adding a zlib plugin '(#695)' '[ci' 'skip].' commit fe3e366800a65550e3a46fdeef857b02907c8de6 Author: Alan Garny '' Date: Fri Jul 24 19:42:12 2015 +0200 PMR window: some work towards using gzip compression to retrieve data from the PMR '(#690)' '[ci' 'skip].' commit bfff490cf43c7bdb29c7ef1a9efc206fb352a85b Author: Alan Garny '' Date: Fri Jul 24 10:20:20 2015 +0200 Some minor cleaning up '[ci' 'skip].' NO_VIZ cannot be found anywhere in the libgit2 code, so $'it\342\200\231s' clearly not 'used!' commit 8a0752de93fc89160953288f22d36c9282b1d4b1 Author: Alan Garny '' Date: Thu Jul 23 20:54:30 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' Make sure that we can build on Windows. There was a problem with some mathematical constants being redefined. It looks like it might be related to https://bugreports.qt.io/browse/QTBUG-45935. commit 68d415cd7987697d6eab6df00c4b5255a9d29e2a Author: Alan Garny '' Date: Thu Jul 23 18:27:25 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 7ea95c39e95bb97e0217262bdc7899bbdc4cf8ba Merge: 1da754d64 c6cc4e4dd Author: Alan Garny '' Date: Thu Jul 23 18:01:16 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 30c19e339564ba50961ee26dbb1b5093c7d24d20 Author: Alan Garny '' Date: Thu Jul 23 17:56:52 2015 +0200 Merged from master. commit c6cc4e4ddffc6916d434d0ae0e134595ecc0d0ba Author: Alan Garny '' Date: Thu Jul 23 17:30:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e0774c1c34422922bb3aa6321e0315d17469831 Author: Alan Garny '' Date: Thu Jul 23 17:16:53 2015 +0200 SED-ML API plugin: added a test that actually creates a SED-ML document, model, etc. '(closes' '#694).' commit 8fa94703485d7ca1c6bd5b12e64f8da20000e54d Author: Alan Garny '' Date: Thu Jul 23 17:10:41 2015 +0200 SED-ML API plugin: now uses C++11 to build libSEDML '(closes' '#692).' commit 2aa36ba4d4692f631770f1cdb0c8463704ad4dfb Author: Alan Garny '' Date: Thu Jul 23 16:47:57 2015 +0200 SBML API plugin: added a test that actually creates an SBML document, model, etc. '(closes' '#693).' commit 1da754d64ccf1d7d52a0e9fc926e67a070400e35 Merge: 32388898c beb4b2a65 Author: Alan Garny '' Date: Thu Jul 23 16:13:38 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit beb4b2a65f060d6317fdc839430db2ab5c0d6f44 Author: Alan Garny '' Date: Thu Jul 23 16:05:01 2015 +0200 SBML API plugin: now use C++11 to build libSBML '(closes' '#691).' commit 87108558417cf57dfe2e270ac75f21b91df20e4e Author: Alan Garny '' Date: Thu Jul 23 14:29:18 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 32388898c9726d3a45f6522e29b67c1fa1e42855 Merge: 32c389ea7 acaa3f660 Author: Alan Garny '' Date: Thu Jul 23 13:56:27 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit acaa3f66072b4e2788c8109f1a69322e3a0c4ef9 Author: Alan Garny '' Date: Thu Jul 23 13:55:40 2015 +0200 Some work on getting our build system to work with Xcode once again. commit 32c389ea79a555bbbc3dfb66a1be9daa7d01c18e Merge: d3fcdf5dc 93c593990 Author: Alan Garny '' Date: Thu Jul 23 11:17:46 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 93c593990bf8019625c369069817261dfc0fa91d Author: Alan Garny '' Date: Thu Jul 23 10:46:14 2015 +0200 Some work on getting our build system to work with Xcode once again '[ci' 'skip].' commit 238405401e44b92005ea1d5002bf15ec35c3c967 Author: Alan Garny '' Date: Thu Jul 23 10:35:15 2015 +0200 Some work on getting our build system to work with Xcode once again '[ci' 'skip].' commit 1a817661330d8958a9c794d863c6120fd1f12734 Author: Alan Garny '' Date: Wed Jul 22 20:38:24 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 70fe54ff7cc89bc9d6cb2509e2c8c3c593651072 Author: Alan Garny '' Date: Wed Jul 22 20:13:10 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 578b80469618099310ecee25057e69edbaa1890e Author: Alan Garny '' Date: Wed Jul 22 19:00:19 2015 +0200 CMake: simplified things a bit since CMAKE_CFG_INTDIR is obsolete. commit 987c33cb3a49bf762060cd0b5df363e6ebe3f0a4 Author: Alan Garny '' Date: Wed Jul 22 18:59:38 2015 +0200 Travis CI: re-enable building and testing on Linux, and for both release and debug, now that we have got building and testing working again on OS X. commit d1cb6729e629a84b1f1c6ba3c6ad6b3b09432d6a Author: Alan Garny '' Date: Wed Jul 22 18:30:21 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit ea12899e267d9afd4fed2182377a8328fb3a04a4 Author: Alan Garny '' Date: Wed Jul 22 18:27:57 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 27d3a408547317bdcff15e271b64a051c025c57c Author: Alan Garny '' Date: Wed Jul 22 17:44:00 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 85abf61fe0e3853bbd56a528818aac347ad4f4f6 Author: Alan Garny '' Date: Wed Jul 22 17:39:54 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 6b45f552615a0561327d8a3467e0de0e08b0d651 Author: Alan Garny '' Date: Wed Jul 22 17:06:59 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit 638ffa69964b8445ba3c0486b95b1f57d8229f97 Author: Alan Garny '' Date: Wed Jul 22 16:51:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit eb5d98cbd7aa97000ba34bcc18f18dfc538d06b9 Author: Alan Garny '' Date: Wed Jul 22 16:15:35 2015 +0200 Travis CI: trying to address an issue with Homebrew building Qt 5.5 with no rpath. commit b8d6895258cb6279878f700b9e4a32cebca9bbb3 Author: Alan Garny '' Date: Wed Jul 22 14:22:53 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7eaf18942f12629dcde54c0f487dd00a3a3eb233 Author: Alan Garny '' Date: Wed Jul 22 13:24:02 2015 +0200 Travis CI: trying to understand why, on OS X, the tests fail and why there is a conflict between Qt frameworks. commit d96d906510728c7528a3d6714e85be971abed010 Author: Alan Garny '' Date: Wed Jul 22 11:36:19 2015 +0200 Travis CI: Qt 5.5 is now available on Homebrew so re-enabling tests on OS X. commit 42c29a33a69b7c9c454dc77754ecf585a137e41a Author: Alan Garny '' Date: Tue Jul 21 17:39:00 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit d3fcdf5dcefb05a23deb5ee7d6e594c9ab475e94 Merge: 6a6425efd 823cd9134 Author: Alan Garny '' Date: Tue Jul 21 17:32:33 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ed3bd82a09bbeb2663c48a939c527d6dda38f4ed Author: Alan Garny '' Date: Tue Jul 21 17:31:40 2015 +0200 Single Cell view: some work towards exporting a simulation to SED-ML '(#684)' '[ci' 'skip].' commit e48d61fe6fa075a5c6ff89bcfaf89de6f47c2878 Author: Alan Garny '' Date: Tue Jul 21 16:15:55 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML '(#684)' '[ci' 'skip].' commit c0a1fcdedd1c5d9b187e051d78691685ee483206 Author: Alan Garny '' Date: Tue Jul 21 15:01:15 2015 +0200 Single Cell view: some work towards exported a simulation to SED-ML '(#684)' '[ci' 'skip].' commit 823cd913468501f4376f6ca5a6a742fa445e9976 Author: Alan Garny '' Date: Tue Jul 21 13:57:41 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6a6425efd09406a0c802f37b0e78dccc35702f26 Merge: e7ecf9dde ec0831c59 Author: Alan Garny '' Date: Mon Jul 20 15:20:35 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ec0831c59a0f01dcdf4fa61c15aeed4263afba85 Merge: 0391037e5 d18db254c Author: Alan Garny '' Date: Mon Jul 20 15:19:01 2015 +0200 Merge pull request '#689' from opencor/issue686 Added a SED-ML Support plugin '(closes' '#686).' commit d18db254cf5da61e68697013c053c33f813d91f6 Author: Alan Garny '' Date: Mon Jul 20 14:57:02 2015 +0200 Merge branch ''\''master'\''' into issue686 commit 0391037e587d445a1c93771b2ba37bdf582ca457 Author: Alan Garny '' Date: Mon Jul 20 14:50:53 2015 +0200 KaTeX: upgraded to version 0.5.0 '(closes' '#688).' commit 64dc2c3e40cada934a1742d8d4f022569b2961eb Author: Alan Garny '' Date: Mon Jul 20 14:13:27 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit 8ba1769b02dde63c78022e862b7a603f635a7fd0 Author: Alan Garny '' Date: Mon Jul 20 11:36:52 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit b89457e320bb24ba8b6b2c727bd1d40d45fe589a Author: David Brooks '' Date: Sat Jul 18 14:54:10 2015 +1200 Tweak text. commit c6362acbf23b276088b80843b91f76e529091ef2 Author: David Brooks '' Date: Sat Jul 18 14:53:28 2015 +1200 Use '`.bsml`' as the extension of BioSignalML HDF5 files. commit 4da1a447b92645887e3301ca4e55b047fbc29e23 Author: David Brooks '' Date: Sat Jul 18 14:52:37 2015 +1200 Template for BioSignalML save dialog. commit b068229d69b9226ed7774fc8081fb8b1f259ff9c Author: Alan Garny '' Date: Fri Jul 17 17:53:56 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit a3316836e9b102ee28ade38e4c982a734bbf46c4 Author: Alan Garny '' Date: Fri Jul 17 16:42:33 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit 2ea7b8b922aa788ee2bd0e3c280980c6f22b8381 Author: Alan Garny '' Date: Fri Jul 17 16:34:05 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit 434859eaf3a2d400f9e8e77ec76e50cf1db046cb Merge: 01077c72e 9d4567f6c Author: Alan Garny '' Date: Fri Jul 17 16:20:09 2015 +0200 Merge branch ''\''master'\''' into issue686 commit 9d4567f6cbc7e89aafbe63a16713cfd6e20ad03e Author: Alan Garny '' Date: Fri Jul 17 16:19:33 2015 +0200 Slight updates to our developer documentation following our simplified OS X build system '[ci' 'skip].' commit 59521dce65c6b42a1a5e49beaef92883ef95234b Author: Alan Garny '' Date: Fri Jul 17 16:13:04 2015 +0200 CMake: '(greatly)' simplified our OS X build system. This was made possible thanks to the way Qt and/or CMake now work. commit 01077c72e5090278f266caf6136a0d67d6331e9c Author: Alan Garny '' Date: Fri Jul 17 15:07:25 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit a5b272294853eec1dba10f1d7da24a688f415dc2 Merge: e84ee62b1 d829adf47 Author: Alan Garny '' Date: Fri Jul 17 14:24:18 2015 +0200 Merge branch ''\''master'\''' into issue686 commit d829adf47fc3383026ff9f97337ddbfbfadd2f0b Author: Alan Garny '' Date: Fri Jul 17 14:23:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e84ee62b18bccf1d31f4c8903e86876a8eea4f11 Author: Alan Garny '' Date: Fri Jul 17 14:22:32 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit e37bfad61c5ed4d56ddeead2067c5aed3a2c94c8 Author: Alan Garny '' Date: Fri Jul 17 13:30:29 2015 +0200 PMR window: have the exposures and exposure files sorted alphabetically '(closes' '#687).' commit e2af017d17f3591ae7c8b0efe168b4d73e66adf7 Author: Alan Garny '' Date: Fri Jul 17 13:28:31 2015 +0200 PMR window: minor '(invisible)' improvement '[ci' 'skip].' commit f74ff5a3226ce29279bbe7910476b454a35895fd Author: Alan Garny '' Date: Fri Jul 17 13:27:42 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8accef08c5cefa060cff8145cce238e6f62bd283 Merge: d3f9287db 6fbfb1a1f Author: David Brooks '' Date: Fri Jul 17 10:01:36 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 97cf2d511f7428347d13278860e893c450848c83 Author: Alan Garny '' Date: Thu Jul 16 20:16:51 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit 52a115e907a70587731ebfaa8c60e0ad26bbd762 Author: Alan Garny '' Date: Thu Jul 16 20:01:00 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 997ff7f2e3e327ac61799079abb73f08af15967a Author: Alan Garny '' Date: Thu Jul 16 19:54:31 2015 +0200 Some work on adding a SED-ML Support plugin '(#686)' '[ci' 'skip].' commit e7ecf9dde74bd4aa6daa0ad3627267c15753e568 Merge: c03b02693 7da9db2fd Author: Alan Garny '' Date: Thu Jul 16 19:38:29 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7da9db2fd258f78b9f2fc55277ba0518114ceea6 Author: Alan Garny '' Date: Thu Jul 16 19:34:33 2015 +0200 SED-ML API: manually fixed a problem with LIBSEDML_USE_CPP_NAMESPACE not having been defined when building libSEDML. commit 0cdc971e628681978cda1a90f714ea930b189b91 Author: Alan Garny '' Date: Thu Jul 16 18:15:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 56cd3bc79d6db6a4bc1b93cd35e6b9ab3487f233 Author: Alan Garny '' Date: Thu Jul 16 17:40:39 2015 +0200 Minor update to the developer documentation '[ci' 'skip].' commit 4d12c8b03fccbd63f061c044e7875f01035101b3 Author: Alan Garny '' Date: Thu Jul 16 17:35:32 2015 +0200 Minor update to the developer documentation '[ci' 'skip].' commit 3d08f0db3edc3274c09bf3075c37fb8c2b3d8bd5 Author: Alan Garny '' Date: Thu Jul 16 16:14:58 2015 +0200 Minor update to the developer documentation '[ci' 'skip].' commit d3f9287db05a06d257f60d2a1c4110d8182ef596 Merge: bc09cff44 453eb222a Author: David Brooks '' Date: Thu Jul 16 17:52:09 2015 +1200 Merge branch ''\''master'\''' into libbsml commit 6fbfb1a1f4d1c5f65eb12f6625633c4747c4f75a Author: Alan Garny '' Date: Wed Jul 15 17:12:20 2015 +0200 Some minor updates to the user documentation '[ci' 'skip].' commit c03b026930f849fe29f5d05332b61db685b4b242 Merge: a5c597249 9014cc6a5 Author: Alan Garny '' Date: Wed Jul 15 15:50:43 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 9014cc6a5203fb97d275c69cfc51773bdbb4086a Author: Alan Garny '' Date: Wed Jul 15 15:47:46 2015 +0200 New snapshots. For some reasons, the previous snapshot $'wasn\342\200\231t' working on '(Mac)' OS X 10.7, 10.8 and 10.9. However, this had been tested through RealVNC, but I $'can\342\200\231t' see why it would make things break. Anyway, more on this at http://www.qtcentre.org/threads/63090-Qt-5-5-QwtPlotDirectPainter-Proble 'ms-on-(Mac)-OS-X.' commit 453eb222a92e54b5156076d5e2b7e7c47b06fdad Author: Alan Garny '' Date: Tue Jul 14 19:44:32 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' We were still referring to plugins/3rdparty rather than plugins/thirdParty. commit a5c597249d70fa1e2d6ce7bfca7d9a46638f08f8 Merge: c36b1c6fa 1938cf7ec Author: Alan Garny '' Date: Mon Jul 13 10:30:11 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 1938cf7ec8c1382c56161b7a2f472ebf08d1a196 Author: Alan Garny '' Date: Mon Jul 13 10:29:13 2015 +0200 New snapshots. commit c36b1c6fadccac41cee3e49a7da1d3f5cb2f35e4 Merge: 0596f6841 ab0788e20 Author: Alan Garny '' Date: Sun Jul 12 22:49:59 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ab0788e2072c0eca28023a9208ff5978b17be96b Author: Alan Garny '' Date: Sun Jul 12 22:48:05 2015 +0200 User documentation: updated the '"What' Is 'New?"' section '[ci' 'skip].' commit e2728da1b3ec88fc5a36b548d9840b3cefb185ef Merge: 0264e6dd8 ca8f85aca Author: Alan Garny '' Date: Sun Jul 12 22:37:37 2015 +0200 Merge pull request '#681' from opencor/issue14 Added support for SED-ML '(closes' '#14).' commit ca8f85aca7c1a0490b779bd9b456fa1853f22c5b Merge: 4990cf012 0264e6dd8 Author: Alan Garny '' Date: Sun Jul 12 22:14:05 2015 +0200 Merge branch ''\''master'\''' into issue14 commit 0264e6dd84c0d3556377f8dac02f42a6fe747c12 Author: Alan Garny '' Date: Sun Jul 12 22:01:04 2015 +0200 Travis CI: show the outcome of the latest build/test from the master branch '(as' opposed to any 'branch).' commit 4990cf01265a43bea4ab223f2e14c7ef2a709cd2 Author: Alan Garny '' Date: Sun Jul 12 21:56:17 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 4a969eb123d12cde773596679d09474643e6e751 Author: Alan Garny '' Date: Sun Jul 12 21:36:40 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 08edcff01c440f9a72a75e0bbba76f901990cb7c Author: Alan Garny '' Date: Sun Jul 12 21:06:12 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 74bbefa15b5269c53ca42a2ed1289bbd9c60d006 Author: Alan Garny '' Date: Sun Jul 12 21:03:41 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit f5962654a70b4a4b62a1474168a2066cbd0d6849 Merge: 3c3401354 a084f6a19 Author: Alan Garny '' Date: Sun Jul 12 14:27:09 2015 +0200 Merge branch ''\''master'\''' into issue14 commit 3c34013549eca43173a238c92f749e8bb10ecccf Author: Alan Garny '' Date: Sun Jul 12 14:25:53 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit a084f6a198ea7b99ff19f016bba543d53a1cb092 Author: Alan Garny '' Date: Sun Jul 12 14:24:57 2015 +0200 CMake: only copy the Qt libraries and external libraries to build/bin '(and' not also to 'build)' '[ci' 'skip].' commit d3ba4e9759634606aa71eca0cbe5b9ae9025c1bf Author: Alan Garny '' Date: Sun Jul 12 11:41:32 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 6d307fb7339e0ec5d008581897c11943c3710dda Author: Alan Garny '' Date: Sun Jul 12 11:27:26 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 9a34f5fb5f9f4327f36611e59621308fbda21b54 Merge: 2fa3d33ec 3abb775d1 Author: Alan Garny '' Date: Sat Jul 11 20:34:14 2015 +0200 Merge branch ''\''master'\''' into issue14 commit 0596f6841461202a3682a9db55576e245fb9ce17 Merge: 8ecab3d49 3abb775d1 Author: Alan Garny '' Date: Sat Jul 11 20:32:20 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3abb775d137e37310fce7a8363f497234d55f651 Author: Alan Garny '' Date: Sat Jul 11 20:29:43 2015 +0200 Travis CI: we now build/test on Linux and build on OS X '(still' waiting for Homebrew to support Qt '5.5).' commit 0136355ef247ee133c27faf7f232b8bbfcd790c7 Author: Alan Garny '' Date: Sat Jul 11 20:16:55 2015 +0200 Travis CI: this should pass now '(still' need to clean things up 'though).' commit b2db5c53214c94f367e61ce6b66dcbef5c4fe169 Author: Alan Garny '' Date: Sat Jul 11 20:11:45 2015 +0200 Travis CI: passing TRAVIS_CI_BUILD=TRUE to CMake. commit b79104869f0963d2a671ec979990cbde3d475949 Author: Alan Garny '' Date: Sat Jul 11 20:06:40 2015 +0200 Travis CI: trying to understand what is going on with the Travis CI environment variables. Could it be that we cannot access them from within 'CMake?...' commit 268faadeb6e42785b10d4859b17bac3ea206b4d2 Author: Alan Garny '' Date: Sat Jul 11 19:58:04 2015 +0200 Travis CI: finding out what values TRAVIS, CI and CONTINUOUS_INTEGRATION have '(they' are supposed to be equal to '"true";' see 'http://docs.travis-ci.com/user/environment-variables/).' commit e6646b69b95335d8d7b67de3921c0c2445e65bf3 Author: Alan Garny '' Date: Sat Jul 11 19:53:46 2015 +0200 Travis CI: use the 'system'\''s' ICU files when building on Travis CI. commit e7a7e5fc568090c6b93d95a386b631a6659655a5 Author: Alan Garny '' Date: Sat Jul 11 19:00:50 2015 +0200 Travis CI: determine the name of the machine on which we are running. commit 3b65cef8e0baae13087501a13af9eb0e6a0cecb8 Author: Alan Garny '' Date: Sat Jul 11 17:10:25 2015 +0200 Travis CI: listing '/usr/lib/libicu*.' commit 84db6240b4dca33d20d2c21dc317ecfc055bf829 Author: Alan Garny '' Date: Sat Jul 11 15:58:00 2015 +0200 Travis CI: trying to determine on which version ucidata qt55multimedia depends. commit 2fa3d33ec7c49a744af946e76661959497df5b04 Author: Alan Garny '' Date: Sat Jul 11 15:44:24 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 1e4324e062ab33a5be2fb36481684f4e3ad949fa Author: Alan Garny '' Date: Sat Jul 11 15:36:51 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit db9fdfaef71eecfc8d7e1f45ac89d2996ab311db Merge: 9a9b17bc6 b77383cc8 Author: Alan Garny '' Date: Sat Jul 11 11:33:14 2015 +0200 Merge branch ''\''master'\''' into issue14 commit b77383cc8cd1ed32485aaf263c7eed64574e7f5c Author: Alan Garny '' Date: Sat Jul 11 11:32:36 2015 +0200 OpenSSL: upgraded to version 1.0.2d '(closes' '#678).' commit 357d40d78c7e3a729404d85bb607c20dd2ee2ef0 Author: Alan Garny '' Date: Sat Jul 11 10:38:04 2015 +0200 Travis CI: still cannot determine in which package icudata, icui18n and icuuc are located, so disabling Linux once again and re-enaling OS X. commit e006334eb77d56c4b56aaa3696efb8c904e982c9 Author: Alan Garny '' Date: Sat Jul 11 10:35:19 2015 +0200 Travis CI: temporarily disable the deployment ICU files. commit 5db005535b7bdfab176a7aac437fb1968208a44c Author: Alan Garny '' Date: Sat Jul 11 10:14:23 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 582ed833314eac560509cb5faf1b54774de1ce91 Author: Alan Garny '' Date: Sat Jul 11 10:06:28 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit d6bec0a3765e810607382924735190dcf67525ed Author: Alan Garny '' Date: Sat Jul 11 03:31:14 2015 +0200 Travis CI: cannot determine in which package icudata, icui18n and icuuc are located, so disabling Linux once again and re-enaling OS X. commit 4404f973d36557bd5306dc1c86ecdfa008d3847a Author: Alan Garny '' Date: Sat Jul 11 03:22:14 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 667cae3e58e04b7353baaa5e133de3fc17393053 Author: Alan Garny '' Date: Sat Jul 11 03:21:31 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 6d83624864e3ad8e8322157023c4377b650b2588 Author: Alan Garny '' Date: Sat Jul 11 03:17:27 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit a75b9dbcd71ddcbd387b8d7c5554176f09475749 Author: Alan Garny '' Date: Sat Jul 11 03:15:05 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit bfce76fdec5c8820bbbbf9b2e10b6318eeebb28e Author: Alan Garny '' Date: Sat Jul 11 03:11:31 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit db9702b3dfb1ea8b5a71ed0d920c83fd28ace1ec Author: Alan Garny '' Date: Sat Jul 11 03:05:47 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit b2ecdd2502a3acd76f49fdfea1cee2df9901e17b Author: Alan Garny '' Date: Sat Jul 11 02:49:54 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 322b5ddf8f2770f04bcba6b0d1a2d665e8b78242 Author: Alan Garny '' Date: Sat Jul 11 02:44:21 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 9739f0a31581284e84ff2c4c4243f310fa888f7f Author: Alan Garny '' Date: Sat Jul 11 02:39:46 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit a9bdfb49a66ff416efd94fd4e97bdbc1da49c8fc Author: Alan Garny '' Date: Sat Jul 11 02:36:29 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 868d29a5a93868dccf1bd9061296b0c28d06fad6 Author: Alan Garny '' Date: Sat Jul 11 02:35:33 2015 +0200 Travis CI: testing which Qt 5.5 packages we really need. commit 90c77312e966ddec6943fb9181409574e3e6558a Merge: 2d5d58304 29a0bc238 Author: Alan Garny '' Date: Sat Jul 11 02:28:10 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor Conflicts: .travis.yml commit 2d5d58304762ca7e51edc03c44c5bb1fac78097b Author: Alan Garny '' Date: Sat Jul 11 02:16:02 2015 +0200 Travis CI: we also need to install qt55location and qt55sensors '(at' 'least),' not because we are using Qt 5.5, but because we now copy the various Qt libraries to our build/lib folder on Linux. commit 29a0bc238fe5d0c92cc5c319a21316afb82376b8 Author: Alan Garny '' Date: Sat Jul 11 02:16:02 2015 +0200 Travis CI: with Qt 5.5, we now need qt55multimedia. commit 390c0e03ca1029a37e1b1671452027b49e1c486f Author: Alan Garny '' Date: Sat Jul 11 02:09:43 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit e25956787da112970baf41ade30d7dfeff3f14c1 Author: Alan Garny '' Date: Sat Jul 11 02:06:07 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit ee381ac0269b28958e10bede0bc67f5d3dfcc8f8 Author: Alan Garny '' Date: Sat Jul 11 01:52:58 2015 +0200 Travis CI: trying to find out where Qt 5.5 gets installed on Ubuntu 12.04 LTS. commit 365a74266fc0c73e27e9151f408fc04e4173557d Author: Alan Garny '' Date: Sat Jul 11 01:31:03 2015 +0200 Travis CI: re-enabling Linux building/testing now that Qt 5.5 seems to be available on Ubuntu 12.04 LTS via Stephan 'Binner'\''s' PPA. commit 8bdcb1181dc1707852931f674cf6d122dfaea906 Author: Alan Garny '' Date: Sat Jul 11 01:21:11 2015 +0200 Travis CI: re-enabling Linux building/testing now that Qt 5.5 seems to be available on Ubuntu 12.04 LTS via Stephan 'Binner'\''s' PPA. commit 9a9b17bc6bdfac2561ac74e85ad45a6ea955439e Author: Alan Garny '' Date: Fri Jul 10 20:01:37 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit f7b5b161c5b5a0dcffbef0830ec94919567adfcb Author: Alan Garny '' Date: Fri Jul 10 19:59:44 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 95cdc12c52fddb2dfeff37826e1d18d5074151ad Author: Alan Garny '' Date: Fri Jul 10 17:29:37 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 011bfee3c1e9a89bec66c2e32ebb437a1b64586a Author: Alan Garny '' Date: Fri Jul 10 17:01:17 2015 +0200 Some work on adding support for SED-ML '(#14)' '[ci' 'skip].' commit 8ecab3d491edd4d5d7388d9356c8db35dec17e8b Merge: 11dacd350 ce03987f1 Author: Alan Garny '' Date: Fri Jul 10 13:12:58 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ce03987f1efff81357a2b3e67a5985a5131ed2a4 Merge: 123f15fc7 6e4387311 Author: Alan Garny '' Date: Fri Jul 10 13:11:26 2015 +0200 Merge pull request '#680' from opencor/issue671 Qt 5.5: Single Cell view: fixed some issues with a graph panel potentially becoming black on OS X and under certain conditions '(closes' '#671).' commit 6e43873114afb7a9f3c62b621f4028aefb8350b3 Author: Alan Garny '' Date: Fri Jul 10 11:45:06 2015 +0200 Qt 5.5: Single Cell view: prevent a graph panel from becoming black when running a simulation on OS X '(#671)' '[ci' 'skip].' commit 7f153822f6c0be6d4eaa1ab0b80455d0ab62b5bb Author: Alan Garny '' Date: Thu Jul 9 16:49:09 2015 +0200 Qt 5.5: Single Cell view: prevent a graph panel from becoming black when adding a graph to it on OS X '(#671)' '[ci' 'skip].' commit 123f15fc78671a042975f4e0dead30390fbb760d Author: Alan Garny '' Date: Thu Jul 9 14:28:00 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 11dacd350f35197f7819e3bb90aaf9c334c7e206 Merge: 05cef2033 5789e0848 Author: Alan Garny '' Date: Thu Jul 9 13:35:40 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 5789e08486037b2f0732c3623b304892bd768806 Author: Alan Garny '' Date: Thu Jul 9 13:12:44 2015 +0200 Qt 5.5: can once again ''\''scroll'\''' the files, modes and views tabs on OS X '(closes' '#672).' commit c6514d3d190f10b05db87a4c40f38624b5cfa516 Author: Alan Garny '' Date: Thu Jul 9 10:37:44 2015 +0200 Oops, minor problem following some cleaning up '(#677).' commit 05cef20335b93dc260170fad3f633b46a9d678de Merge: a1752614d edf24b114 Author: Alan Garny '' Date: Thu Jul 9 10:33:08 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit edf24b114ca00aae07fe3c2010d04564d7d8cbd3 Merge: 2db2bb93d 98e239500 Author: Alan Garny '' Date: Thu Jul 9 10:29:41 2015 +0200 Merge pull request '#679' from opencor/issue677 libgit2: upgraded to version 0.23 '(closes' '#677).' commit 98e2395007771efbed47c8fa2ec00ac56ee85c14 Author: Alan Garny '' Date: Thu Jul 9 10:16:39 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677).' commit f2d75c52a19023ada0fe172c50753f9f13d9bc71 Author: Alan Garny '' Date: Thu Jul 9 09:58:36 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 8a4476051302636c21fe44e06b5d3833c1ba5120 Author: Alan Garny '' Date: Wed Jul 8 19:31:52 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 97b3781810c7e52daf87143998111a06e121513a Author: Alan Garny '' Date: Wed Jul 8 19:22:04 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 2a58f6ab13af8cd3ae75d61e6a01228dcef91149 Author: Alan Garny '' Date: Wed Jul 8 19:01:58 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit b21473e1f9350d1e5dd77e741f06fa7a6256fe11 Author: Alan Garny '' Date: Wed Jul 8 18:35:10 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit d55dfee0205458c3dbafc20066ec9a48b30760b2 Author: Alan Garny '' Date: Wed Jul 8 18:28:19 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 4d8ad23f32a4dd9ef966f2ac8db14ed5ff0b125e Author: Alan Garny '' Date: Wed Jul 8 17:02:56 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit bc95cab6fd44fc5751abbad59c3badd77b4b051d Author: Alan Garny '' Date: Wed Jul 8 15:00:55 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit a1c6bdea377caf8e871631b10d360d3c9879a128 Author: Alan Garny '' Date: Wed Jul 8 13:56:50 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 3b7d9b6e74c294e7c84b0b0900d1608c63a4401a Author: Alan Garny '' Date: Wed Jul 8 13:08:54 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit f5aad83a23051c3bef2cec3153f4e46ede6f6cdf Author: Alan Garny '' Date: Wed Jul 8 11:16:14 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 5c362506ad602f00cda83abffcfe23a7c2cc38a8 Author: Alan Garny '' Date: Wed Jul 8 11:14:27 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit 942f05747fc25e9b6f31a1aaf76500191a74a4f5 Author: Alan Garny '' Date: Wed Jul 8 11:08:26 2015 +0200 libgit2: some work on upgrading to version 0.23 '(#677)' '[ci' 'skip].' commit a1752614dd317bdb4df998a4a8bb95f1f3881244 Merge: fff0d0e25 2db2bb93d Author: Alan Garny '' Date: Wed Jul 8 10:49:34 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 2db2bb93d130c8e407713931f2c867c1ea278739 Author: Alan Garny '' Date: Wed Jul 8 09:44:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fff0d0e25709872b7ba3e0f04688d90d32ff63ce Merge: 4ebfbd020 7d4d2123e Author: Alan Garny '' Date: Wed Jul 8 09:14:27 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7d4d2123eecc721307c21f850498021a760e2c4f Author: Alan Garny '' Date: Wed Jul 8 09:13:13 2015 +0200 Single Cell view: fixed an error in the initial value of a ''\''constant'\''' algebraic variable '(closes' '#675).' commit 4ebfbd020e854964bf59d26be6c8beaec5ecf6d9 Merge: 9f6e382f5 7b70feab0 Author: Alan Garny '' Date: Tue Jul 7 17:56:37 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7b70feab0dfadf941f0cf6d9587031e2c19d78c0 Author: Alan Garny '' Date: Tue Jul 7 17:35:53 2015 +0200 Single Cell view: fixed an error in the initial value of a ''\''constant'\''' algebraic variable '(closes' '#675).' commit 54abccf31e039764313671a39cab64ab6f29d16d Author: Alan Garny '' Date: Tue Jul 7 17:17:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cf4fca70ce893542617389cd5fe829978b4e54a0 Author: Alan Garny '' Date: Tue Jul 7 14:50:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2e3d9224ceedff4642852ff112e0ef8411aa0d2b Author: Alan Garny '' Date: Tue Jul 7 14:47:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 71ff9592125beead6aa17279448fcef228ee323e Author: Alan Garny '' Date: Tue Jul 7 14:33:14 2015 +0200 Single Cell view: made sure that the progress bar is properly reset when switching from one file to another '(closes' '#676).' commit 2b9acf142fdb88ea9b10698e42cf8d067cb67357 Author: Alan Garny '' Date: Mon Jul 6 20:26:55 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again '(closes' '#674).' commit b0ec72fcec1f27a8f042bfb55b9232832e3818bc Author: Alan Garny '' Date: Mon Jul 6 20:23:30 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again '(closes' '#674).' commit a8d95b5650570e6c20df173ad63ea55f3a88f04c Author: Alan Garny '' Date: Mon Jul 6 20:18:23 2015 +0200 CMake build on Linux: copy Qt libraries to the build/lib folder, so we can locally test OpenCOR once again '(closes' '#674).' commit bb60417eb177c05c0a38a49f3768f86f3759a3a0 Author: Alan Garny '' Date: Mon Jul 6 20:04:22 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 04acd25ee44a1c2ff5476d4265135b8c8a09845c Author: Alan Garny '' Date: Mon Jul 6 19:46:50 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b1998d2e9127689488af48126f3348ddb41289a5 Author: Alan Garny '' Date: Mon Jul 6 19:27:34 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9f6e382f5082fd2300e9bdf1a0e1a592004f152c Merge: 337e38bf1 4f6e262cf Author: Alan Garny '' Date: Mon Jul 6 15:47:53 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 4f6e262cfbef6893cbab2b188715f4121823e411 Author: Alan Garny '' Date: Mon Jul 6 15:42:27 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4b96d47b809f8ab69ae948fc189fbdf512137d6b Author: Alan Garny '' Date: Mon Jul 6 15:32:21 2015 +0200 Command line: made it possible to reset OpenCOR '(closes' '#673).' commit 274f0c1a912f70ae28c7f690b084b9268114a940 Author: Alan Garny '' Date: Mon Jul 6 15:16:00 2015 +0200 Command line: some minor refactoring and improvement '[ci' 'skip].' commit 8d47146ca5d3b14134714d147635328393e6f9bf Author: Alan Garny '' Date: Sun Jul 5 12:28:05 2015 +0200 Qt 5.5: cleaned up some code and ended up deploying symbolic links, so make sure that we get the target file and rename it '(as' we used to do 'before…)' '[ci' 'skip].' commit 40534a8c1ecaf63a76851a434b94e98ea854a608 Author: Alan Garny '' Date: Sun Jul 5 12:00:41 2015 +0200 Qt 5.5: had forgotten to deploy the libQt5Multimedia.so.5 file '(on' 'Linux)' '[ci' 'skip].' commit c82420c2763705082d21d0be75c6a6ac453264f4 Author: Alan Garny '' Date: Sun Jul 5 11:24:19 2015 +0200 Travis CI: disable Linux altogether and only building on OS X. commit 710595e83caafd7907bad2f6c372d5c5415ed1c5 Author: Alan Garny '' Date: Sun Jul 5 11:05:22 2015 +0200 Travis CI: trying to use Qt 5.5 Beta on Ubuntu 12.04 LTS '(even' though it was built for Ubuntu 14.04 'LTS).' commit 337e38bf115039e5cb311ea88f2a6b823f6af71b Merge: ce017900b 9f9c48336 Author: Alan Garny '' Date: Sun Jul 5 10:16:40 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 9f9c483362b8ce03d2bbdb6274d761c8b39282f8 Author: Alan Garny '' Date: Sun Jul 5 10:15:54 2015 +0200 Qt 5.5: updated third-party binaries '(closes' '#670).' commit ce017900bdf028c3deb6feed7000cccfc908d057 Merge: ea01581af aee0a9ac4 Author: Alan Garny '' Date: Sun Jul 5 08:40:06 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit aee0a9ac4ebc0ef5a7f2b74e450a9c95657d631f Merge: c324030fc b726c851a Author: Alan Garny '' Date: Sun Jul 5 08:31:52 2015 +0200 Merge pull request '#669' from opencor/issue667 Upgraded to Qt 5.5 '(and' Qt Creator '3.4.2)' '(closes' '#667).' commit b726c851a0792bf25c585b42e134349671f8e3f9 Author: Alan Garny '' Date: Sun Jul 5 08:28:00 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit be23bb9682e2a710851b13edf541d95f24d2c972 Author: Alan Garny '' Date: Sat Jul 4 21:16:23 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 6fb6891c5f94420242c4e0136433aedd4bcd6990 Author: Alan Garny '' Date: Sat Jul 4 18:38:09 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2849329bfa0e37551c328cafb97d82ac5190b53a Author: Alan Garny '' Date: Sat Jul 4 15:11:52 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 4c6a6bdb41b95c6c00ba73c7fc946af96850f738 Author: Alan Garny '' Date: Sat Jul 4 15:08:34 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 08906ef8418e96fc3a68663f1fbe02e95e786d5b Author: Alan Garny '' Date: Sat Jul 4 15:06:21 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 487e265c91c17e24cbf4279949159dedf3651efb Author: Alan Garny '' Date: Sat Jul 4 14:36:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 029310783dcaf0440e0bf2fc55ec640a89cf672d Author: Alan Garny '' Date: Sat Jul 4 10:45:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit f02bb019dabddf558db6059c1a625cd2b5abe901 Author: Alan Garny '' Date: Sat Jul 4 09:22:35 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 61f3565ebc3a473a0c8a25a41a86958390490467 Author: Alan Garny '' Date: Sat Jul 4 08:28:52 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 621c08b78fc75210ac75aed8a465c537eec0c5f6 Author: Alan Garny '' Date: Fri Jul 3 20:32:49 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 1d3589470ffb1e69582f4999821b28b1da23a4dd Author: Alan Garny '' Date: Fri Jul 3 20:18:37 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 9c375ed567ddfb19ff72ffb7fb67ad510759d528 Author: Alan Garny '' Date: Fri Jul 3 18:08:16 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit c75123e9dcffcb8a3c4ca17a87ac3571034d6320 Author: Alan Garny '' Date: Fri Jul 3 17:53:45 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit c6ff2ff6d8406701b8694009d7cbe4030824ee59 Author: Alan Garny '' Date: Fri Jul 3 17:44:02 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 5f5eee0a65d7d3e1d7709b2af9999e7ab053694b Author: Alan Garny '' Date: Fri Jul 3 12:01:19 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 75bfbf6228b75d25a76f4e1d6bfd845b78f11a5a Author: Alan Garny '' Date: Fri Jul 3 11:07:01 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit b28308eaeffe3a65ba5878ae00e8cbaa7ae5f0f7 Author: Alan Garny '' Date: Fri Jul 3 10:54:44 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 1c8336df0486db7a3b48c74d646fa24486d66c66 Author: Alan Garny '' Date: Fri Jul 3 10:20:45 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 56f7dd24e0262ad5e046fc580b2c0ed40a388e50 Author: Alan Garny '' Date: Thu Jul 2 18:16:58 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit ba973c3ca63cea92e8e1a5de422175029680d735 Author: Alan Garny '' Date: Thu Jul 2 11:34:35 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 57fec01725ef9c9fdaf3485227fc61b0d9f19a27 Author: Alan Garny '' Date: Thu Jul 2 11:23:40 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 2c6c6b3b68e72fdb18c0ca61d37ca7221cdeac91 Author: Alan Garny '' Date: Thu Jul 2 11:09:40 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 876a99b71fddc8424107ee5e8c1e5ebea6d15058 Author: Alan Garny '' Date: Thu Jul 2 10:56:55 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit 231226405d67a17311761305cc8bc39cf13b41a0 Author: Alan Garny '' Date: Thu Jul 2 09:37:58 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit deb0308322dea833e53f00eea0bad72c3552d2dc Author: Alan Garny '' Date: Thu Jul 2 08:43:07 2015 +0200 Upgrade to Qt 5.5 '(and' Qt Creator '3.4.2)' '(#667)' '[ci' 'skip].' commit ea01581afb711994ae2f84aa626826e0bd8cffa5 Merge: b1e6a2041 c324030fc Author: Alan Garny '' Date: Thu Jul 2 00:39:37 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit c324030fc125a5ba52ed13770b5aba576a5657ec Merge: 2ab1d9964 fd12a0282 Author: Alan Garny '' Date: Thu Jul 2 00:33:28 2015 +0200 Merge pull request '#668' from opencor/issue664 Added support for SBML '(closes' '#664).' commit fd12a02825902ddc5a9273bb38a22104dc240629 Author: Alan Garny '' Date: Thu Jul 2 00:22:43 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 2bcd4309603812e38141d5695ea2c8cbda0155b9 Author: Alan Garny '' Date: Thu Jul 2 00:16:10 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit f2ad5f6b75e2bd4acb8a50bf82d115c31d9cb9f7 Merge: 095eb00e5 2ab1d9964 Author: Alan Garny '' Date: Thu Jul 2 00:14:15 2015 +0200 Merge branch ''\''master'\''' into issue664 commit 2ab1d99647b02bbc3bc16d2f93a58344f63bad5f Author: Alan Garny '' Date: Thu Jul 2 00:13:58 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 979a80b623399ccb435011b49f94b956df0be67c Author: Alan Garny '' Date: Thu Jul 2 00:08:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 095eb00e55b20dd47b4061fdc92a27f6a5313a75 Author: Alan Garny '' Date: Thu Jul 2 00:04:10 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 59ad6eb39f068301591d2826a36e926810d4cea6 Author: Alan Garny '' Date: Wed Jul 1 23:57:42 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit e36a308586dd68adfe4aeacceaa71145ec58fdae Author: Alan Garny '' Date: Wed Jul 1 23:47:21 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 717b37b1ad3ea8a6cc9934168275e5827f665b50 Author: Alan Garny '' Date: Wed Jul 1 22:57:43 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 6d2e5654117b8c065cd75b9d12ff7be68e6235c1 Author: Alan Garny '' Date: Wed Jul 1 22:13:25 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 775cc378afbe1499e3a2d0281e1087450a63d9ef Author: Alan Garny '' Date: Wed Jul 1 22:12:07 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 4d29d96d3bf1d7ab715f366586f0678b6d38c613 Author: Alan Garny '' Date: Wed Jul 1 17:24:46 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit d4c2793f9f2c173a09878735ba77e6b3b8a190ae Author: Alan Garny '' Date: Wed Jul 1 16:58:56 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 49f8704b2220292e4ff95f6073fe7c447e642283 Author: Alan Garny '' Date: Wed Jul 1 16:00:09 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 8b3e187facba539b586ead55f9aaaf2bccc9a4ed Author: Alan Garny '' Date: Wed Jul 1 10:07:10 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 69275281e0f57750ba6e2ae98b53a7febbd7a3f8 Author: Alan Garny '' Date: Wed Jul 1 10:05:57 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 328a0c93ae3263f2c58bf8602f67efe724ca8877 Author: Alan Garny '' Date: Wed Jul 1 09:57:47 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 0f9cbbc46734136505b4154aee57df5a24126b20 Merge: f9fce33c6 2c188fdbf Author: Alan Garny '' Date: Wed Jul 1 09:16:38 2015 +0200 Merge branch ''\''master'\''' into issue664 commit b1e6a2041f2e65dba9b56adc6c798ae55dc6e709 Merge: d113c6cc4 2c188fdbf Author: Alan Garny '' Date: Wed Jul 1 09:14:39 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 2c188fdbf18efecba3ca4d6bd2cbbe7df90c44d5 Author: Alan Garny '' Date: Wed Jul 1 09:14:12 2015 +0200 CellML API: added some basic tests to make sure that we have access to the CellML API '(closes' '#666).' commit d58152451e183e6f73764544f3d8816764bfb742 Author: Alan Garny '' Date: Wed Jul 1 09:13:38 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fe1c203b1533a91c90bbe359ed2653e1002a9480 Author: Alan Garny '' Date: Tue Jun 30 20:19:39 2015 +0200 Updated the developer documentation following the release of Xcode 6.4 '[ci' 'skip].' commit f9fce33c68a29469923c54ac8f7f7c5b2f2be34d Author: Alan Garny '' Date: Tue Jun 30 17:35:52 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 621d543c5a48e0578ce8abebe0c6ad679e1c29ae Author: Alan Garny '' Date: Mon Jun 29 16:51:56 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8c98d976a71cec8c461eebcc7f552d1469f7171b Author: Alan Garny '' Date: Mon Jun 29 16:51:00 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit 791741fbb937053e4a6bfe5476c4d2aa7897db51 Author: Alan Garny '' Date: Mon Jun 29 16:32:12 2015 +0200 libSBML: some work towards supporting SBML '(#664)' '[ci' 'skip].' commit aa364f76dc00da372975cd905eaed61372878fbf Merge: 45ce7b9b6 b493bcfb4 Author: Alan Garny '' Date: Mon Jun 29 16:30:56 2015 +0200 Merge branch ''\''master'\''' into issue664 commit d113c6cc4188d3cd66df7653db7e1e577a35c3b0 Merge: 979c2a23e b493bcfb4 Author: Alan Garny '' Date: Mon Jun 29 15:56:27 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit b493bcfb46f7273ebf92606487c4f13d8b58df2e Author: Alan Garny '' Date: Mon Jun 29 15:55:15 2015 +0200 New snapshots. commit f459be75fa5c37ffa41fb786f4009ed89dc20913 Author: Alan Garny '' Date: Mon Jun 29 15:12:51 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET '(and' not also 'CMAKE_OSX_SYSROOT)' '(closes' '#665).' commit 45ce7b9b68bea2811c3310f1daf775476301c952 Merge: f568b672a c40a3b3f6 Author: Alan Garny '' Date: Mon Jun 29 14:51:58 2015 +0200 Merge branch ''\''master'\''' into issue664 commit c40a3b3f65f8f51eee4c0ee3b7e10e5311641d7b Author: Alan Garny '' Date: Mon Jun 29 14:51:24 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET '(and' not also 'CMAKE_OSX_SYSROOT)' '(closes' '#665).' commit 22409b23b6e0f5557b02c1848c375318cdf5c7f8 Author: Alan Garny '' Date: Mon Jun 29 13:58:24 2015 +0200 CMake: some work on simply setting CMAKE_OSX_DEPLOYMENT_TARGET '(and' not also 'CMAKE_OSX_SYSROOT)' '(#665)' '[ci' 'skip].' commit f568b672a94baa0f42916c747b9dfb0f0aa44b59 Author: Alan Garny '' Date: Sun Jun 28 20:54:51 2015 +0200 libSBML: some work towards supporting SBML '(#664).' commit 1c903a9870450a1560b616048d3993b69ca94401 Author: Alan Garny '' Date: Sun Jun 28 20:22:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b63130a893bb5ec003b53488433388cd3bc2a475 Author: Alan Garny '' Date: Sun Jun 28 20:18:37 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5a2e617764dc4df74886a046ea0a09d0c0cc5020 Author: Alan Garny '' Date: Sun Jun 28 20:04:36 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a76f65d2df456f25ce9d91004feff5cd297aacba Author: Alan Garny '' Date: Sun Jun 28 18:36:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 979c2a23e195b27a57298489c427a3c2ffee9d16 Merge: 9e5ea7ca4 463534cb0 Author: Alan Garny '' Date: Sun Jun 28 15:08:10 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 463534cb02706c99cb3cffa8108290d9ef69987c Author: Alan Garny '' Date: Sun Jun 28 15:06:20 2015 +0200 Single Cell view: make sure that simulations of models with loads of parameters finish smoothly '(closes' '#656).' commit 9e5ea7ca4b6c297a3f1280385b0d2b4c35c7d210 Merge: 0085f855d 5d2b424a0 Author: Alan Garny '' Date: Sun Jun 28 14:14:24 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 5d2b424a0b18fe61ef4159e9b3b44d273e2fb0c2 Author: Alan Garny '' Date: Sat Jun 27 17:27:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5f7726fd1258c97bb8d65f82997d94f20c4f57c9 Author: Alan Garny '' Date: Sat Jun 27 10:29:55 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 0085f855dfb8908b4dd5a0e89e01b58648614057 Merge: fc677b129 d7a5cc52e Author: Alan Garny '' Date: Fri Jun 26 18:33:08 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d7a5cc52ed715b4843d133156cff24a59b4db0bd Author: Alan Garny '' Date: Fri Jun 26 18:32:38 2015 +0200 Some minor cleaning up following issue '#658.' commit fc677b129896ab80a59db8e473b848d5fc4760dc Merge: 781d55b31 0e71db50e Author: Alan Garny '' Date: Fri Jun 26 11:50:30 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 0e71db50eb8fa836b3349501b614244a8174fb37 Author: Alan Garny '' Date: Fri Jun 26 11:47:26 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit d957e7ee32cc0fbd103be509e6ab9d5128c35e83 Author: Alan Garny '' Date: Fri Jun 26 11:41:12 2015 +0200 CellML Annotation view: added some tool tips to our web-based outputs '(closes' '#663).' commit 47563dcc06ad1398a2b6566d7bfcf7211fe4fee2 Author: Alan Garny '' Date: Fri Jun 26 11:00:16 2015 +0200 CellML Annotation view: slight improvement to the GUI on OS X '[ci' 'skip].' commit 781d55b31ae520f2253a706f7a3c3f22f2893712 Merge: 0782ec826 9de620be4 Author: Alan Garny '' Date: Fri Jun 26 10:41:39 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 9de620be4360dc4675a076003c71b932ed4297a6 Author: Alan Garny '' Date: Fri Jun 26 10:41:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 09635d5a10f8f97442a9632261513ad203cd18b9 Author: Alan Garny '' Date: Fri Jun 26 10:40:33 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 490f36f713d0b6dc733db28b9eae3521e179cda7 Author: Alan Garny '' Date: Fri Jun 26 10:29:24 2015 +0200 PMR window: added tool tips for buttons '(closes' '#662)' '[ci' 'skip].' Forgot to include the translations. commit 538ded2e5598e745fde1ad02942e5c8ff42fd022 Author: Alan Garny '' Date: Fri Jun 26 10:25:57 2015 +0200 PMR window: added tool tips for buttons '(closes' '#662).' commit 9aded2e8d6e2c582430eba2e39f2227b5b843879 Author: Alan Garny '' Date: Fri Jun 26 10:23:26 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6c7023721bdfdd91feeed1b03a3c139221c0b5eb Author: Alan Garny '' Date: Fri Jun 26 09:50:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 88f1c844009d2a099f4369f3b6b3cca7a89ca2ce Author: Alan Garny '' Date: Fri Jun 26 09:45:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7ecafc5849ef5f5ff70d8b6121ce88a6e4121e6b Author: Alan Garny '' Date: Thu Jun 25 23:32:39 2015 +0200 Travis CI: was using the wrong CMake download. commit 5774f8c864296a9ef55e45332d5a85280d56eeae Author: Alan Garny '' Date: Thu Jun 25 23:00:47 2015 +0200 Travis CI: Qt 5.4.2 is not available for Ubuntu 12.04 LTS, so reverting to Qt 5.4.1. commit 0782ec826683ee11fddd38d3ace44b2ee34384fd Merge: 62963acc5 de4925f6f Author: Alan Garny '' Date: Thu Jun 25 22:27:58 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit de4925f6ff42cbded6a348e38e25f8f76cbc4251 Author: Alan Garny '' Date: Thu Jun 25 22:19:08 2015 +0200 Travis CI: use updated versions of CMake and Qt on Linux. commit f2def693fa1fa4d56d16884bc74e9f90aafc967f Author: Alan Garny '' Date: Thu Jun 25 13:32:26 2015 +0200 PMR window: use help@physiomeproject.org as the contact email address '(closes' '#661).' commit 62963acc56ea7511e3f697444f5984f8f60eb75b Merge: de52fc958 8311264fd Author: Alan Garny '' Date: Thu Jun 25 13:21:21 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 8311264fd533b1d86ebf3361a84491826ff42f6c Author: Alan Garny '' Date: Thu Jun 25 10:10:46 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit de52fc95863e35b6c993c06c990c73e781581b95 Merge: 290c044c6 54b29cac0 Author: Alan Garny '' Date: Thu Jun 25 09:45:15 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 54b29cac04dfb1e898827296748f7187ae96fd39 Author: Alan Garny '' Date: Thu Jun 25 09:06:28 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9ccd1ab4c063d9034f667e067e319b852a9799e9 Author: Alan Garny '' Date: Wed Jun 24 21:27:50 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9af2a5d2b2a2a0c591026e0018263d4dd58093d7 Author: Alan Garny '' Date: Wed Jun 24 18:06:11 2015 +0200 Property editor widget: update a tool tip only if required '(when' updating its name, unit or extra 'info).' commit 659b6dad0ddbf0fe49e85f3fa729ce7b3c7fdf32 Author: Alan Garny '' Date: Wed Jun 24 18:03:25 2015 +0200 Property editor widget: update a tool tip only if required '(when' updating its name, unit or extra 'info).' commit 290c044c6c9752c1619c4beb2313884b6c3f3cc6 Merge: 3444ff7e2 22754741a Author: Alan Garny '' Date: Wed Jun 24 17:13:30 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 22754741a51ff1e8f83bcfab451ab29d5e87dc65 Author: Alan Garny '' Date: Wed Jun 24 16:46:50 2015 +0200 CellML Text view: an id on a MathML element should be serialised using the MathML id attribute rather than cmeta:id '(closes' '#658)' '[ci' 'skip].' commit 90581e6ee238c999c09576c7debf3b9a956874c7 Author: Alan Garny '' Date: Wed Jun 24 16:08:01 2015 +0200 CellML Text view: an id on a MathML element should be serialised using the MathML id attribute rather than cmeta:id '(closes' '#658).' commit f360779db95c7b47c5ad466d2c7aa135ee5430a0 Author: Alan Garny '' Date: Wed Jun 24 16:03:40 2015 +0200 Reuse icons wherever possible '[ci' 'skip].' We really $'don\342\200\231t' want those static const QIcon statements outside a method anywhere $'otherwise\342\200\246' it may crash OpenCOR in some way or another '(e.g.' ./OpenCOR -c 'CellMLTools::help).' commit 4755ad3ee483a9a025a0bb59c94582294497e643 Author: Alan Garny '' Date: Wed Jun 24 15:48:00 2015 +0200 Reuse icons wherever possible '[ci' 'skip].' To have those static const QIcon outside a method in the Core plugin means that we get various messages that read something like: You might be loading two sets of Qt binaries into the same process. Check that all plugins are compiled against the right Qt binaries. Export DYLD_PRINT_LIBRARIES=1 and check that only one set of binaries are being loaded. QObject::moveToThread: Current thread '(0x7fa75bd2a230)' is not the 'object'\''s' thread '(0x7fa75d8038e0).' Cannot move to target thread '(0x7fa75bd2a230)' So, we are putting back those static const QIcon back into a method. commit 3444ff7e22c36bb196067f751c2b7e899066ae1f Merge: 741010daa e2cafec48 Author: Alan Garny '' Date: Wed Jun 24 15:33:38 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit e2cafec48511097ac3ddd8491812e5f0b80097e8 Author: Alan Garny '' Date: Wed Jun 24 14:07:59 2015 +0200 Single Cell view: cleaned up the parameter icons '(closes' '#659).' commit 156ebd6b4e5e2b79c864c886e3bec45a62af2ef2 Author: Alan Garny '' Date: Wed Jun 24 13:52:42 2015 +0200 Reuse icons wherever possible '[ci' 'skip].' commit ba3df49eaf62c43c5af4198f1db4b5b587b4e877 Author: Alan Garny '' Date: Wed Jun 24 11:42:31 2015 +0200 Property editor widget: update a tool tip only if required '(when' updating its name, unit or extra 'info)' Note: this is particularly useful when initially populating a property editor widget, especially when you have loads of properties '(e.g.' a model that has loads of parameters, all of which we must list in the Single Cell 'view).' commit ce8aa2bdef9130c1396aac29615afc8c7471ce20 Author: Alan Garny '' Date: Wed Jun 24 11:27:09 2015 +0200 Reuse icons wherever possible '[ci' 'skip].' Note that in the Single Cell view, this speeds things up a bit when you have loads of parameters. As a result, it helps with issue '#656.' commit 7753b5b0e8bcdf4e838dbd2466f1759ab28e9f17 Author: Alan Garny '' Date: Wed Jun 24 11:13:04 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4ad6240cfa30300c1b56c881958fcb4940252c92 Author: Alan Garny '' Date: Tue Jun 23 19:58:09 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit bbff6d7192de65453f298cbd3dd9e551db8d3063 Author: Alan Garny '' Date: Tue Jun 23 10:20:00 2015 +0200 KaTeX: upgraded to version 0.4.3 '(closes' '#657).' commit 2ca730a881ec467b4070f0a1603d39281298b132 Author: Alan Garny '' Date: Tue Jun 23 08:34:20 2015 +0200 Single Cell view: fixed an issue with the plotting of simulation data potentially being a bit messy during a simulation '(closes' '#636).' commit 741010daac69912c2e60d397c961912ac3f34cc8 Merge: 8ea6b02bb 0cb24d910 Author: Alan Garny '' Date: Mon Jun 22 16:31:20 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 0cb24d91063b88efe2ec6d36bc75295d4c96f4b5 Author: Alan Garny '' Date: Mon Jun 22 16:30:51 2015 +0200 Single Cell view: improved the accuracy of the progress bar '(closes' '#655).' commit 134769d0b268f2592452155790284250b622396a Author: Alan Garny '' Date: Mon Jun 22 16:29:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 13b8a7513efb9f767585db7333a757d8719a2ac6 Author: Alan Garny '' Date: Mon Jun 22 15:11:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8ea6b02bb1d970ab6d29070ede39301f75f16b48 Merge: 51dfd9558 1d77f2b0e Author: Alan Garny '' Date: Mon Jun 22 11:55:29 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 1d77f2b0ef96a2ac571d8343b47ab3b9c0b86f80 Author: Alan Garny '' Date: Sun Jun 21 20:55:01 2015 +0200 Single Cell view: slight improvement to our working loop '[ci' 'skip].' commit af8a00f7b5d598049d5620c21b20e19dd062a809 Author: Alan Garny '' Date: Sat Jun 20 23:03:32 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 94cbceb3be4a1a1aa7da30f90fd4ca89e4834fe7 Author: Alan Garny '' Date: Sat Jun 20 11:59:55 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 90c429a46c076dfe7043bf1e79cb59f51abc6701 Author: Alan Garny '' Date: Fri Jun 19 14:03:28 2015 +0200 Some minor refactoring of plotting of graph segments and improvement of graph addition '[ci' 'skip].' commit c3dab4c7dcf18b8ee3e57d35ecd905bede0c498a Author: Alan Garny '' Date: Thu Jun 18 23:36:37 2015 +0200 CellML tools: let people know if a file cannot be physically exported '(closes' '#653).' commit 193ebced0a7fc146372460eb60328372dfbaad73 Author: Alan Garny '' Date: Thu Jun 18 23:30:42 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit de43121315b6ec3f59f87f34e3130fa6091c3110 Author: Alan Garny '' Date: Thu Jun 18 21:56:04 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 859e0e42151b6fa67e28b6a6d885272a95a607ac Author: Alan Garny '' Date: Thu Jun 18 21:50:47 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 098e807dc3ae143f0f20fa6ec61c63f38d3c5d86 Author: Alan Garny '' Date: Thu Jun 18 21:11:43 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 51dfd9558b8cd440165a3787f680ba0c2054cd78 Merge: ba5cfe95e 4f5be752e Author: Alan Garny '' Date: Tue Jun 16 15:14:53 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 4f5be752e7d3b9892f610cd1e9372439cef94ecf Author: Alan Garny '' Date: Tue Jun 16 14:17:19 2015 +0200 User documentation: updated the CVODE and IDA documentation about disabling Interpolate solution for models with a stimulus protocol '(closes' '#650).' commit 3fc94a2dec38be2177c95d32b3b06bf57c73c617 Author: Alan Garny '' Date: Tue Jun 16 11:32:37 2015 +0200 Some minor cleaning up of the user documentation '[ci' 'skip].' commit ba5cfe95e3a2ad8731ef645e33f4c8f44b9703b2 Merge: 1ee332946 9d0d5b23e Author: Alan Garny '' Date: Tue Jun 16 11:18:36 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 9d0d5b23ea9060e6b052d6d2bced6c6caaf20c1a Author: Alan Garny '' Date: Tue Jun 16 11:17:17 2015 +0200 OpenSSL: upgraded to version 1.0.2c '(closes' '#649).' commit 8831030db18fd65883596168d7caf8cbd25ad652 Author: Alan Garny '' Date: Tue Jun 16 11:07:47 2015 +0200 Slight update tot he developer documentation '[ci' 'skip].' commit 1ee332946d02759bd379d4269f2ed984957fe405 Merge: 24e65e554 d7ee1ad53 Author: Alan Garny '' Date: Tue Jun 9 17:30:58 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d7ee1ad53bc5473f1ea0107d7249de05f2c532b8 Author: Alan Garny '' Date: Tue Jun 9 17:30:26 2015 +0200 New snapshots. commit 24e65e5547f3a30b901f7996cc91bb827c97f023 Merge: a03afaf72 44ef83f58 Author: Alan Garny '' Date: Tue Jun 9 17:23:25 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 44ef83f588710ec629da23221d4d07eb716de686 Merge: f6306dcb0 2d2201fd7 Author: Alan Garny '' Date: Tue Jun 9 17:20:19 2015 +0200 Merge pull request '#647' from opencor/issue643 Found a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(closes' '#643).' commit 2d2201fd7a80df816ffe1bc30b7882047223018e Author: Alan Garny '' Date: Tue Jun 9 16:58:19 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 33ce75ee9b7dbf1836f739f46fcc043ea08bf607 Author: Alan Garny '' Date: Tue Jun 9 16:37:49 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit e6d977baa9d9714bf1d2c41e3772d3a9c446a962 Author: Alan Garny '' Date: Tue Jun 9 16:31:56 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 286cc39a083bfa2803c8608791bb2a922963040b Author: Alan Garny '' Date: Tue Jun 9 16:30:21 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit f457932ec6989ca8b7430801c9175196708492b7 Author: Alan Garny '' Date: Tue Jun 9 16:26:19 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 4deac05a560a7ba807927997e61732401e0c4b68 Author: Alan Garny '' Date: Tue Jun 9 16:17:25 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit a348c9deb60855ae08f1b012e9521a02eded8ddd Author: Alan Garny '' Date: Tue Jun 9 16:00:58 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Build libgit2 on Linux. commit 4ee5d1b8fd4e3b7f702ac746bdc10f00424861d0 Author: Alan Garny '' Date: Tue Jun 9 15:32:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Got confirmation that we got a null pluginInfo object on Travis CI on Ubuntu 12.04 LTS. Now, trying to find out exactly where. commit d2f44d2f87ddecab252a72e79f965a9d4c64cbbc Author: Alan Garny '' Date: Tue Jun 9 15:11:13 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit ce82532b1aa0a39866ea5099f977cbe5890d5864 Author: Alan Garny '' Date: Tue Jun 9 15:00:04 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit dcfb29d6f839b4c9a467698a5e3d2ae654dd3fdd Author: Alan Garny '' Date: Tue Jun 9 14:40:11 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit 6a1b1143be61047f662cf50ca598e99ef29f2f6f Author: Alan Garny '' Date: Tue Jun 9 14:34:39 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Just checking that the issue was indeed with trying to use to a null pluginInfo object. commit 6ce529996f80e1f9daedaeab920ea8460d5c376f Author: Alan Garny '' Date: Tue Jun 9 13:26:34 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Oops, mistakenly dropped $'sortedFilenames\342\200\246' commit 53ce61d75cfcefd185b4e01f0c0b7b759a17ba1b Merge: 9625a6e14 f6306dcb0 Author: Alan Garny '' Date: Tue Jun 9 13:20:10 2015 +0200 Merge branch ''\''master'\''' into issue643 commit f6306dcb04896f2d46927943d5c376aa44abcb8c Author: Alan Garny '' Date: Tue Jun 9 13:19:24 2015 +0200 Some minor cleaning up that gets us closer to issue643. commit 9625a6e14d82539824b1c6f38536406c454cc6ff Merge: 4ef738762 fd94a0742 Author: Alan Garny '' Date: Tue Jun 9 13:15:07 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. It would seem that the issue might have been related to our trying in 'PluginManager::PluginManager()' to use a null pluginInfo 'object?…' commit fd94a0742976fe251efcb07ec3a85726332d562c Author: Alan Garny '' Date: Tue Jun 9 13:07:44 2015 +0200 Some minor cleaning up that gets us closer to issue643. The idea is to try to minimise the difference between the master and issue643 branches, in an attempt to determine what makes the issue643 branch to fail its tests on Linux on Travis CI. commit 4ef738762deef64f4a4c7e7bd2ba2775098f40c8 Author: Alan Garny '' Date: Tue Jun 9 12:57:12 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit c4619a183dcb9e0b240ecfe37d9a84a322a3b57a Merge: 4ab45f8d2 52c302dd1 Author: Alan Garny '' Date: Tue Jun 9 12:36:55 2015 +0200 Merge branch ''\''master'\''' into issue643 commit 52c302dd197b69cbbc12cd867e22082722e8667e Author: Alan Garny '' Date: Tue Jun 9 12:35:51 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4ab45f8d2b0579ccd15fac49354b74c7b2612f53 Author: Alan Garny '' Date: Tue Jun 9 12:31:53 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit b706e56df732fe75384544c7bd58259841fc29f7 Merge: 46806fae4 059c16b04 Author: Alan Garny '' Date: Tue Jun 9 12:30:15 2015 +0200 Merge branch ''\''master'\''' into issue643 commit 059c16b04251e268e7d3afa0e133d4859071ee7a Author: Alan Garny '' Date: Tue Jun 9 12:29:38 2015 +0200 Some minor cleaning up. commit 46806fae4e1c56a39176f5aaf3778eaa05d8aa21 Merge: ad2a1a7a9 bbc9d0fb9 Author: Alan Garny '' Date: Tue Jun 9 12:27:12 2015 +0200 Merge branch ''\''master'\''' into issue643 commit ad2a1a7a92cd19c5e4bb22e1e6c90716fd25fb3b Author: Alan Garny '' Date: Tue Jun 9 11:53:27 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Ok, everything works fine using the master branch, so $'it\342\200\231s' not an issue with our prebuilt libgit2, but what could it be then since $'it\342\200\231s' working fine if we use a non-prebuilt 'libgit2?' Trying to move the tracking of a $'plugin\342\200\231s' full dependencies further up. Could that somehow solve the 'problem?' Also, FWIW, Travis CI runs on Ubuntu 12.04 LTS while we support 14.04 LTS and later. Still, as previously said, it all works fine with the master branch, so it $'shouldn\342\200\231t' matter as such. commit bbc9d0fb91111632ffc88a55c5a6ebea9023d366 Author: Alan Garny '' Date: Tue Jun 9 11:47:46 2015 +0200 Travis CI: just to check that everything builds fine on Linux '(since' it now fails on 'issue643).' commit 9840fe26af02ba68753066b4988e0eea81e71dfb Author: Alan Garny '' Date: Tue Jun 9 11:37:02 2015 +0200 Travis CI: just to check that everything builds fine on Linux '(since' it now fails on 'issue643).' commit 73cc7e5de60d5ab81176bf890d960eac640adbee Author: Alan Garny '' Date: Tue Jun 9 11:25:36 2015 +0200 Travis CI: just to check that everything builds fine on Linux '(since' it now fails on 'issue643).' commit fb7f9129fd94e6311ac69db39ba3b24a75d62c8b Author: Alan Garny '' Date: Tue Jun 9 11:25:19 2015 +0200 Use our latest LLVM binaries '[ci' 'skip].' commit 013e87d0c8d83bffb295140fd0f92ca387e00ffa Author: Alan Garny '' Date: Tue Jun 9 11:17:59 2015 +0200 Travis CI: just to check that everything builds fine on Linux '(since' it now fails on 'issue643).' commit d7a11f40f251ff4d3abf9e8ff9870b46016f9b05 Author: Alan Garny '' Date: Tue Jun 9 10:35:23 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 762a6a97a86df43587b4f1d91e91d538ea979bcb Author: Alan Garny '' Date: Tue Jun 9 10:11:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 2b9c7dfcbfe09443724db1b0705e3b08b66913a2 Author: Alan Garny '' Date: Tue Jun 9 09:22:50 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. It looks like it might be an issue libc not being found on Travis CI, so building libgit2 to find out what is needed by a built libgit2 compared with a prebuilt libgit2. commit 005d03fb1d1bdd2f44b2b08db79ba21fccb5d1d3 Author: Alan Garny '' Date: Tue Jun 9 01:16:20 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. still having problems with 'libgit2!' commit e2493b137b569101bd64b0eb0f131143d7c14f16 Author: Alan Garny '' Date: Tue Jun 9 00:40:18 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Trying without $'\342\200\230manually\342\200\231' building $'libgit2\342\200\246' commit a55141df2862f3eaca0d6760996a47742659412f Author: Alan Garny '' Date: Tue Jun 9 00:25:49 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Actually, rebuilt our third-party libraries and reloaded them. Indeed, it would seem that what is failing our Travis CI build on Linux is 'libgit2?…' commit ff1cf9463da4681027bf5286d5297f434d09a191 Author: Alan Garny '' Date: Mon Jun 8 20:36:43 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit e38ea3226d80cffadea91118d6b58702f8a6a73e Author: Alan Garny '' Date: Mon Jun 8 20:22:13 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit a350062951d82c843b159cfc6280dfa43d088676 Author: Alan Garny '' Date: Mon Jun 8 20:03:04 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit ebd51a515605b41acdc94462dd9efc212496ddb9 Author: Alan Garny '' Date: Mon Jun 8 19:35:01 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 8a2716311396515a16e2ed1dafd3fb82f1300d7a Author: Alan Garny '' Date: Mon Jun 8 19:10:54 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. commit 1c8e722cfa9fbed541dbdff4473280c034d4c991 Author: Alan Garny '' Date: Mon Jun 8 18:53:30 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on Linux. Argh, the problem $'wasn\342\200\231t' on OS X, but on 'Linux!' commit 34ed4fbe039003d1fd15696f9e4219cce0d0b416 Author: Alan Garny '' Date: Mon Jun 8 18:50:54 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on OS X. commit 56ca6f842d65cd52c17df769b4fc3eb436844d71 Author: Alan Garny '' Date: Mon Jun 8 18:29:29 2015 +0200 Travis CI: trying to understand why the CellML Tools tests now fail on OS X. commit 6a4e3156c34bd99485df55c8a5c5fc64fd1d1cfb Author: Alan Garny '' Date: Mon Jun 8 18:21:36 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 7de61a02e77a7b24831741f5e89f804371da514e Author: Alan Garny '' Date: Mon Jun 8 15:59:10 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643).' commit 0324e3ecde549d1c6f0e4e908b6dd38941482940 Merge: 05baf141f f3c605051 Author: Alan Garny '' Date: Mon Jun 8 14:54:12 2015 +0200 Merge pull request '#646' from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' commit f3c60505168f2f6827d3429977386fad063bffbd Author: Alan Garny '' Date: Mon Jun 8 14:53:33 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' '[ci' 'skip].' commit 05baf141fd305197c99b41de942f24ae870d8ee2 Merge: 4a35cc999 61a77fc02 Author: Alan Garny '' Date: Mon Jun 8 14:38:11 2015 +0200 Merge pull request '#645' from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' commit 61a77fc02f5b075184d5f554ef43a55916853048 Author: Alan Garny '' Date: Mon Jun 8 14:36:48 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' '[ci' 'skip].' commit 4a35cc99977216e59970185929835baf44b2bd06 Merge: 4aeda249f 40ccc7b42 Author: Alan Garny '' Date: Mon Jun 8 14:32:25 2015 +0200 Merge pull request '#644' from opencor/issue643 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' commit 40ccc7b4210df239b71c840f0ac072f14133469b Author: Alan Garny '' Date: Mon Jun 8 14:30:48 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' '[ci' 'skip].' commit fc844eaa8699e348dee0e5b3da6a2fa44ed5bfc3 Author: Alan Garny '' Date: Sun Jun 7 11:37:54 2015 +0200 Some work on finding a way to get the Physiome Model Repository window to show before the File Browser and File Organiser windows '(as' used to be the case with the CellML Model Repository 'window)' '(#643)' '[ci' 'skip].' commit a03afaf72bbbc531f0023b90eebff8ee584b6dc5 Merge: c640cf9af 4aeda249f Author: Alan Garny '' Date: Sun Jun 7 10:16:43 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 4aeda249f1456960930feb507d06d5e2da71560d Author: Alan Garny '' Date: Sat Jun 6 21:06:39 2015 +0200 Some minor refactoring following PR '#625' '[ci' 'skip].' commit 18c0422f04c1cd14ff9e8bd387e3c755c6d5332d Merge: 0350b9dbc 03f07edd3 Author: Alan Garny '' Date: Sat Jun 6 20:39:29 2015 +0200 Merge pull request '#642' from opencor/issue638 Renamed the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(closes' '#638).' commit 03f07edd371eb8b2592a811052f87cc055ab7b8e Author: Alan Garny '' Date: Sat Jun 6 20:20:34 2015 +0200 Some work on renaming the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(#638).' commit bc58b4534fec7f052c6daa4ad4d2a7389bb0c74c Author: Alan Garny '' Date: Sat Jun 6 20:13:47 2015 +0200 Some work on renaming the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(#638)' '[ci' 'skip].' commit 0cf20d4e8e85f2d4676c302ae42b2d060dbcf2a1 Author: Alan Garny '' Date: Sat Jun 6 16:51:48 2015 +0200 Some work on renaming the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(#638)' '[ci' 'skip].' commit f8df1d9ab0df31bba5b6b0d65f932452e9c05ead Author: Alan Garny '' Date: Sat Jun 6 16:22:21 2015 +0200 Some work on renaming the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(#638)' '[ci' 'skip].' commit 76fc8c1e16e9fb9ca3bf4e9dfd6dab4a228a64d0 Author: Alan Garny '' Date: Sat Jun 6 15:48:15 2015 +0200 Some work on renaming the '"CellML' Model 'Repository"' window to '"Physiome' Model 'Repository"' window '(#638)' '[ci' 'skip].' commit 0350b9dbcd9e837316425729b6a74f513b4e4d08 Author: Alan Garny '' Date: Sat Jun 6 15:28:05 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1f75f72499cfb1007de255ec49326c23fa1dfcef Merge: 1e1b6c0e8 d8bf57329 Author: Alan Garny '' Date: Sat Jun 6 15:19:28 2015 +0200 Merge pull request '#625' from dbrnz/datastoreid Save the 'model'\''s' cmeta:id and base XML URI with a simulation result set. commit d8bf5732943c2e19a6f086db2b057552f71477b1 Merge: 724c4304f 1e1b6c0e8 Author: David Brooks '' Date: Sat Jun 6 11:18:27 2015 +0200 Merge branch ''\''master'\''' into datastoreid commit 724c4304fab4743bf723881009bd6b7ceb5f16d3 Merge: dece761d5 44a700dd8 Author: David Brooks '' Date: Sat Jun 6 11:16:42 2015 +0200 Merge branch ''\''master'\''' into datastoreid commit dece761d5921889b7b0d1e8d9b1d2f3b20ad93a3 Author: David Brooks '' Date: Thu Jun 4 15:25:20 2015 +0300 Use correct name for '`cellmlFile()`.' commit 1e1b6c0e862b3560387f2c45ef364be87ad780d5 Author: Alan Garny '' Date: Sat Jun 6 02:26:02 2015 +0200 PMR window: sped up both 'CellmlModelRepositoryWindowWidget::initialize()' some more '[ci' 'skip].' commit 0537a5f8a9f09459078d348e1830228cf03b3fd8 Author: Alan Garny '' Date: Sat Jun 6 02:01:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit a0e069218c40f6e8bc4d9bb2c848943b7aaae31c Author: Alan Garny '' Date: Sat Jun 6 01:57:10 2015 +0200 PMR window: sped up both 'CellmlModelRepositoryWindowWidget::filter()' some more '[ci' 'skip].' commit c640cf9af6353ffbd5dd93a82259e535aa65c6a6 Merge: fdf6e3e45 f2d4b7651 Author: Alan Garny '' Date: Fri Jun 5 21:58:26 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit f2d4b76519bf98b25b02733b76fb2351c684710c Author: Alan Garny '' Date: Fri Jun 5 21:54:39 2015 +0200 PMR window: sped up both 'CellmlModelRepositoryWindowWidget::initialize()' and 'CellmlModelRepositoryWindowWidget::filter()' '[ci' 'skip].' commit fb7e5f30c244aaea414d32a1cab45b5a2b5ddcf3 Author: Alan Garny '' Date: Fri Jun 5 21:53:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7a8ce1695fb19cb96c3f0d879fe4fd0653d73078 Author: Alan Garny '' Date: Fri Jun 5 21:29:16 2015 +0200 PMR window: oops, had forgotten to show/hide a particular tr element '(#592)' '[ci' 'skip].' commit fdf6e3e45cf9863bdca4dd1d19ef7349d8ea7ac6 Merge: 17bfdc073 a540c887b Author: Alan Garny '' Date: Fri Jun 5 21:05:42 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit a540c887ba0473283387100e009667f610602d0b Author: Alan Garny '' Date: Fri Jun 5 20:59:45 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit 01bb68d7671e59434023086738a5a4d98c960638 Merge: bef5b2466 5fb91bd83 Author: Alan Garny '' Date: Fri Jun 5 20:50:44 2015 +0200 Merge pull request '#641' from opencor/issue592 PMR window: allow a CellML file to be opened directly '(closes' '#592).' commit 5fb91bd832d39bbfa5bf9e442655666ef0df52c6 Author: Alan Garny '' Date: Fri Jun 5 20:23:36 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592).' commit f5477006fc70a9b1498cc51eaf5068d4818d482c Merge: 6e305408a bef5b2466 Author: Alan Garny '' Date: Fri Jun 5 20:13:29 2015 +0200 Merge branch ''\''master'\''' into issue592 commit bef5b24669cc84afa825e6b78f5cfe3e0a46eed4 Author: Alan Garny '' Date: Fri Jun 5 20:13:17 2015 +0200 Have 'WebViewWidget::retrieveLinkInformation()' return the corresponding QWebElement '[ci' 'skip].' commit 12e04fb41261a290e260194cdf150b0a0ea9be4c Author: Alan Garny '' Date: Fri Jun 5 20:07:50 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e305408aa8703ea89d3435b553fc90ca2c2a7b5 Author: Alan Garny '' Date: Fri Jun 5 20:05:39 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit 5b1908f517b12898121a8b0b0c663b3a5b897fa1 Author: Alan Garny '' Date: Fri Jun 5 19:54:54 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit ce6a633410dab9705a55a222834d717d2222acb0 Author: Alan Garny '' Date: Fri Jun 5 19:29:21 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit 60211417b4804faf1f7518ecb65d5550d7e8403d Author: Alan Garny '' Date: Fri Jun 5 19:19:15 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit a9bec0b8c2e66264a5d5fb11fd04ee0801cff180 Author: Alan Garny '' Date: Fri Jun 5 17:14:10 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit 8f6f87386541aa68b9905e6af30a39d97515cb7d Author: Alan Garny '' Date: Fri Jun 5 16:47:00 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit c9f2ca75b7c1061e4a4e45bbd3efdf5f32f93c97 Author: Alan Garny '' Date: Fri Jun 5 16:29:47 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit f52ad48c96ca5705e94055842529dac5a5a229d0 Author: Alan Garny '' Date: Fri Jun 5 16:27:39 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit 17bfdc073fe8e16b7275006a0693c803b6da8d62 Merge: f3245896c 38c4b4557 Author: Alan Garny '' Date: Fri Jun 5 16:03:27 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 38c4b45574129ee6885c6c797a3f88e4aa3793d4 Author: Alan Garny '' Date: Fri Jun 5 16:02:21 2015 +0200 CellML Annotation view: slight improvement to our buttons for adding/removing an ontological term '[ci' 'skip].' commit e791aa8391070d7d5a53699477f2532a430c979a Author: Alan Garny '' Date: Fri Jun 5 15:57:40 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit 3021bfac45c1474f4bb0f24921b3bade087df5f2 Author: Alan Garny '' Date: Fri Jun 5 14:41:54 2015 +0200 PMR window: some work on allowing a CellML file to be opened directly '(#592)' '[ci' 'skip].' commit a457af67efdf0ef4b17ce30d9046d60032102415 Author: Alan Garny '' Date: Fri Jun 5 14:06:28 2015 +0200 Some minor updates to the user documentation '[ci' 'skip].' commit f3245896c5ec9f74544a462585c8f0b35e248cb8 Merge: 327280592 78448e6c9 Author: Alan Garny '' Date: Fri Jun 5 13:58:06 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 78448e6c9822b21d69661f8f5e68de8e14ef1cc3 Merge: 2f3dde514 14826663d Author: Alan Garny '' Date: Fri Jun 5 13:55:22 2015 +0200 Merge pull request '#639' from opencor/issue593 PMR window: allow a workspace to be cloned '(closes' '#593).' commit 14826663d9ca7f2db9599aa70168ddbb8e173141 Author: Alan Garny '' Date: Fri Jun 5 13:52:00 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 5d4cb4de6f9bae4e20f0e0e70aeba18cb076e25f Author: Alan Garny '' Date: Fri Jun 5 13:45:33 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 32728059275ba89b7f61ba328653bbc1ddd7ede5 Author: Alan Garny '' Date: Fri Jun 5 09:55:03 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1f913463d0f5243dbed1ea2c6de4adaee0619de7 Author: Alan Garny '' Date: Thu Jun 4 19:33:09 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 03ce3e04b15993fcc3516c01b9ebdb8ccada13bd Author: Alan Garny '' Date: Thu Jun 4 19:14:18 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit a9aa077bda70a741ec815b0b7a6bacc34260a9bf Merge: 9169710cd 2f3dde514 Author: Alan Garny '' Date: Thu Jun 4 17:23:03 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 2f3dde514e17c984acdbbbb55a9257a1b635c559 Author: Alan Garny '' Date: Thu Jun 4 17:22:38 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9169710cd95ba1d5d3e4c55af4480f28624f7a6b Author: Alan Garny '' Date: Thu Jun 4 17:21:06 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 7bfd7f008492572c5445583fb9ce200b39c0b69b Author: Alan Garny '' Date: Thu Jun 4 16:25:35 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit e0d161a187a584bf2f5751010d9765de03d8cdfb Author: Alan Garny '' Date: Thu Jun 4 15:14:49 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 431577657c024451f7688d7df6af8bc81f0aea78 Author: Alan Garny '' Date: Thu Jun 4 14:51:26 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 4c2d169a4bc23943cc802f3844384072922d5c1b Author: Alan Garny '' Date: Thu Jun 4 13:21:51 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 8f71d74a89908664a77e118eaf1c42234884240d Merge: 2c66bc15a 527eb099b Author: Alan Garny '' Date: Thu Jun 4 11:37:01 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 527eb099b4fdecba538115852c564becffc5ee63 Author: Alan Garny '' Date: Thu Jun 4 11:36:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' Refactored a struct into a class. commit 2c66bc15a79ab361a508ad0d0d58f4c982d29ce1 Author: Alan Garny '' Date: Thu Jun 4 10:38:08 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit ae223211ae058fd829030e8550f205b1c6e0be93 Author: Alan Garny '' Date: Wed Jun 3 19:03:05 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit e087b560fddc03f36146575ec39c3b133b704ec0 Author: Alan Garny '' Date: Wed Jun 3 19:01:55 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 1e1870a78e78c2ad5f0c96576055fce080d7e2f2 Author: Alan Garny '' Date: Wed Jun 3 18:24:56 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 7da8653caf3b6c423ab2b116b55e7722f4f77d14 Merge: cb9a03f95 28baa6bf1 Author: Alan Garny '' Date: Wed Jun 3 17:57:57 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 28baa6bf1bf17e5b92e4c4fd7d9c36d2d6bed000 Author: Alan Garny '' Date: Wed Jun 3 17:57:44 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit cb9a03f9521a237140c13f18b4323703a3ca8822 Author: Alan Garny '' Date: Wed Jun 3 17:57:04 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 5d11e1143dbdcb26009424b8c8f322df24dfe8a2 Author: Alan Garny '' Date: Wed Jun 3 17:26:13 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit d659aa423c5347b9f39fd4460b13d02e41211d6a Merge: db628a80a 2d7e2037c Author: Alan Garny '' Date: Wed Jun 3 17:04:20 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 2d7e2037ce0834a6cf3be4512f465225eba3cc3a Author: Alan Garny '' Date: Wed Jun 3 16:56:54 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit f0ab8908d154f37a521aacfef56d19df917cd599 Author: Alan Garny '' Date: Wed Jun 3 16:47:49 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d5c0188bd1f20298e87e19b1775e21d282bf1128 Author: Alan Garny '' Date: Wed Jun 3 16:39:52 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 343bcd851f5c33e236785dce2d6c78df9cdc821a Author: Alan Garny '' Date: Wed Jun 3 16:39:36 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 8c0dfef40fe1131ba7dff53d3aa8ac8318ad79f2 Author: Alan Garny '' Date: Wed Jun 3 16:36:06 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit d7a3d358b82a0a63fe8b5d9e55499d5f83aad0ae Author: Alan Garny '' Date: Wed Jun 3 16:33:01 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit f5a5ef79e4917774b0960382388b8bce99d290bd Author: Alan Garny '' Date: Wed Jun 3 16:28:25 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit c99f084ace05a5758f51a194184a35b5c4a24067 Author: Alan Garny '' Date: Wed Jun 3 16:24:11 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 6872a02e445eadf0be5299143d4198e108d0e27b Author: Alan Garny '' Date: Wed Jun 3 16:22:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 25b8555e9c03eb6258f479cb33ce60595cda7270 Author: Alan Garny '' Date: Wed Jun 3 16:03:27 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 7a5095a46989a60fd4f98b3a6b189dd519198976 Author: Alan Garny '' Date: Wed Jun 3 15:39:02 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 7fd9659a0ea72c824f5b7dccd1959f161342bc7f Author: Alan Garny '' Date: Wed Jun 3 15:27:28 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 8ce4f6eb50a33eb20aae427e34d8d3d9b227b5b9 Author: Alan Garny '' Date: Wed Jun 3 15:14:57 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 7025921c2aa389866423185d3c85f90162e3b7bd Author: Alan Garny '' Date: Wed Jun 3 15:07:35 2015 +0200 Cleaned up our use of .UI files '[ci' 'skip].' commit 6b7f9801091fc9582246e5e3dff7a513d90b0848 Author: Alan Garny '' Date: Wed Jun 3 14:42:41 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit db628a80abcb6d53bbcb295045e408b375d7830f Merge: 8cb669a9e 040df5cd5 Author: Alan Garny '' Date: Wed Jun 3 14:03:29 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 040df5cd5d8e20a3fdf268b690932833f2dd56fa Author: Alan Garny '' Date: Wed Jun 3 14:02:42 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8cb669a9e981ed4d39d9b46e4c16b7e8c40c591e Author: Alan Garny '' Date: Wed Jun 3 14:02:14 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 4e0ed0f747d6d6570ec6dec445beba49d69ea563 Author: Alan Garny '' Date: Wed Jun 3 13:26:48 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 657e3546f3f3ea9df2af195e566d6459675c410d Author: Alan Garny '' Date: Wed Jun 3 11:33:30 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 5500ae2ad7aa7c3dfde86a0c36e599ce9875824f Author: Alan Garny '' Date: Wed Jun 3 10:31:32 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 44d2e624f1bc6725f40a2634421cccef5a3d319a Author: Alan Garny '' Date: Wed Jun 3 10:18:32 2015 +0200 Merge branch ''\''master'\''' into issue593 commit ae3ab947da8cf5d48ddf1d3c1a90694426f614f8 Author: Alan Garny '' Date: Wed Jun 3 10:17:23 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 315a4407f90dac35571a8630885ad3df53552407 Author: Alan Garny '' Date: Wed Jun 3 10:11:07 2015 +0200 Renamed the CellMLAnnotationView::CellmlAnnotationViewMetadataWebViewWidget class to Core::WebViewWidget '(closes' '#637).' commit a018b679c545c6033bb5c1ec1f8d4e734e02ce22 Author: Alan Garny '' Date: Tue Jun 2 19:46:48 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit c3e62ac7255974b5073444fb648de9a1bf3e5824 Author: Alan Garny '' Date: Tue Jun 2 19:36:25 2015 +0200 Merge branch ''\''master'\''' into issue593 commit b971e696435ed674204335a58f23c6e38b94264b Author: Alan Garny '' Date: Tue Jun 2 19:34:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9f0a300bb68d8c1c0791d9423a53a1affa374c63 Merge: cddd3cb41 df743b226 Author: Alan Garny '' Date: Tue Jun 2 19:28:48 2015 +0200 Merge branch ''\''master'\''' into issue593 commit df743b226975262335a5a3cffd016400f3a608b1 Author: Alan Garny '' Date: Tue Jun 2 19:28:12 2015 +0200 Renamed the CellMLAnnotationView::CellmlAnnotationViewMetadataWebViewWidget class to Core::WebViewWidget '(closes' '#637).' commit cddd3cb41ed83d87825270472339a066ca6424eb Author: Alan Garny '' Date: Tue Jun 2 18:32:03 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 2c02677bad6d2a544ff16890c7d311d43b1490cb Merge: 553fb5498 b5dcf49a9 Author: Alan Garny '' Date: Tue Jun 2 15:23:45 2015 +0200 Merge branch ''\''master'\''' into issue593 commit b5dcf49a9df4a1474426ca262d98d8d911d65a86 Author: Alan Garny '' Date: Tue Jun 2 15:23:30 2015 +0200 Improved the GUI by adding an icon for opening remote files '[ci' 'skip].' commit 553fb54986b7c92997961d9e72b0f324d30dd56c Merge: ee9526b13 76d82bf2e Author: Alan Garny '' Date: Tue Jun 2 15:05:52 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 76d82bf2e447315a812a941a52615b4e01fbd139 Author: Alan Garny '' Date: Tue Jun 2 15:02:35 2015 +0200 Slight improvements to the rendering of windows borders on OS X '[ci' 'skip].' commit 3edb7436b2f288e370c2a622c5527047ffc7bbb6 Author: Alan Garny '' Date: Tue Jun 2 14:57:25 2015 +0200 Slight improvements to the rendering of windows borders on OS X '[ci' 'skip].' commit 83b91693b2995aad920cd9a1fa4a78b9095fed72 Author: Alan Garny '' Date: Tue Jun 2 14:56:52 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 45ce3d5d40cecf6339c7dc8302b248e593809978 Author: Alan Garny '' Date: Tue Jun 2 14:49:57 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d7a53b85e85e8d882beff7672d72fda8c6239b5d Author: Alan Garny '' Date: Tue Jun 2 14:30:20 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1aee08e6ccd58968b730ecacb44c7988b11c2b2b Author: Alan Garny '' Date: Tue Jun 2 14:26:14 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3fdf11f0c356a5e0890ac05c483a99329dbc63c9 Author: Alan Garny '' Date: Tue Jun 2 13:25:47 2015 +0200 Slight update to the developer documentation following the release of Qt 5.4.2 and Qt Creator 3.4.1 '[ci' 'skip].' commit ee9526b137bfe4350d33da137564b20a20e1e6ff Author: Alan Garny '' Date: Tue Jun 2 11:33:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1697e2f2fe5aee0cf8dc8225f45b601520339f34 Author: Alan Garny '' Date: Tue Jun 2 11:00:05 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' The original idea was to use a QTreeView-based widget to list the published exposures, but this $'wouldn\342\200\231t' be ideal since we want to be able to have clickable links. This could be done, but more hassle than actually necessary. So, reverting to using a web-based approach. commit d868f74680c32a34ef8e2ebdf68ef8f77a4a275e Author: Alan Garny '' Date: Mon Jun 1 18:33:06 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit da6f775e5112bbd7f8843f51083d3ed26ba5df15 Author: Alan Garny '' Date: Mon Jun 1 17:56:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e60f174e591034f211941bb24a96f8e75437c9e4 Author: Alan Garny '' Date: Mon Jun 1 17:02:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9ca5e668cb330487a29748643639565b4d43b7fe Author: Alan Garny '' Date: Mon Jun 1 16:52:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6bd7b646d2c78375d8f329e9738942332ed3b295 Merge: 54d2aff09 f1b945cc6 Author: Alan Garny '' Date: Mon Jun 1 16:37:45 2015 +0200 Merge branch ''\''master'\''' into issue593 commit f1b945cc6bd46e1c8ded0933c45ecbf57579edd5 Author: Alan Garny '' Date: Mon Jun 1 16:18:17 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 54d2aff094c4caa55c3e83244aaf74b5268e920a Author: Alan Garny '' Date: Mon Jun 1 15:57:46 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 4a50834dcb5ddb897856fb0676c251bdaf684460 Author: Alan Garny '' Date: Mon Jun 1 14:47:42 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 499a90a33d2be4c939e69d612b837f6438c1f607 Merge: e740811b3 44a700dd8 Author: Alan Garny '' Date: Mon Jun 1 10:41:17 2015 +0200 Merge branch ''\''master'\''' into issue593 commit bc09cff44f8df23ee79c3f2ed510fb8fbfdea60a Merge: 1bc2a31db 44a700dd8 Author: David Brooks '' Date: Sun May 31 12:36:05 2015 +0300 Merge branch ''\''master'\''' into libbsml commit 44a700dd81368031c72596b0a10ced1aadf5e449 Author: Alan Garny '' Date: Sat May 30 00:37:56 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 100611a2552aa97a23418488a4f8101d2dd15b36 Author: Alan Garny '' Date: Fri May 29 16:26:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3de624d2498c801ed615e4f6039f9acc6bc93cb8 Author: Alan Garny '' Date: Fri May 29 16:25:18 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 768d4eeaa3b5cf57ff86386ffe390464ba1e4d19 Author: Alan Garny '' Date: Fri May 29 14:31:12 2015 +0200 Fixed an issue with the OpenCOR installation directory always being used when saving a new file '(closes' '#631).' commit 891acdf622883910a827be2b3923a3d58aded032 Author: Alan Garny '' Date: Fri May 29 14:15:09 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6ef8d23c11399ed929efc9df62a47d7c513e3387 Author: Alan Garny '' Date: Fri May 29 13:43:39 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fc8e5619cadbbf08f52b70fd28f459444fe9cf5c Author: Alan Garny '' Date: Fri May 29 11:28:27 2015 +0200 Core plugin: allow for a selected filter to be provided in a call to 'getSaveFileName()' and the like '(closes' '#626).' commit a63e72c043ba67c598ac63ae8fd9cd52047eae77 Author: Alan Garny '' Date: Fri May 29 11:24:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9e847e30f49038a8bfd393c0ac2f02448ea32768 Author: Alan Garny '' Date: Fri May 29 11:16:54 2015 +0200 Updated the user documentation following issue '#635' '[ci' 'skip].' commit fa303674e58e64fab523d11937911f2a3bcf589e Merge: e156d614f 42e7c9bef Author: Alan Garny '' Date: Fri May 29 11:10:44 2015 +0200 Merge pull request '#635' from opencor/issue630 CellML Text view: allow comments before the definition of a model '(closes' '#630).' commit 42e7c9befb6efd42bd9b63de8693b8f581d6faa1 Author: Alan Garny '' Date: Fri May 29 11:08:57 2015 +0200 CellML Text view: done allowing comments before the definition of a model '(#630)' '[ci' 'skip].' commit dff91023f97fe0881f698cb803b0843028440f93 Author: Alan Garny '' Date: Fri May 29 11:03:36 2015 +0200 CellML Text view: some work on allowing comments before the definition of a model '(#630)' '[ci' 'skip].' commit e156d614fe747988e66b4e3d60ad8ed226a151ae Author: Alan Garny '' Date: Fri May 29 11:00:10 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 747db1ec72903ac13433c1f4b783a1d7c3d5be45 Author: Alan Garny '' Date: Fri May 29 10:14:27 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3d72f26b585194ccb2eb46be33ab78f33f27b04c Author: Alan Garny '' Date: Fri May 29 09:44:58 2015 +0200 Travis CI: trying to avoid stalling builds '(#627).' To use ninja still resulted in a stalling build on Linux while it simply crashed g++ on OS X. So, now trying to make -j 3... commit 03bb99427b726568d407bdf3f44674911219057b Author: Alan Garny '' Date: Fri May 29 09:40:13 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b0f9f9a48822409467f9f3ff8c9eb29785df5fb5 Merge: ef1aba390 fa4e3c8da Author: Alan Garny '' Date: Fri May 29 09:34:19 2015 +0200 Merge pull request '#624' from dbrnz/modelid Provide access to the CellML file object from its runtime and to the underlying 'model'\''s' cmeta:id. Merging, although I am going to implement the above ''\''corrections'\''.' commit ef1aba390d80d0d19ad7dcb567d1b91a1f908555 Author: Alan Garny '' Date: Thu May 28 21:00:35 2015 +0200 Travis CI: trying to use ninja to build OpenCOR '(#627).' commit 1bc2a31db6fda3a954cc8183a8dd1d74cd620e6e Author: David Brooks '' Date: Thu May 28 17:54:15 2015 +0200 Use BioSignalML library to export a simulation as a HDF5 file. commit 5048f42bed1d8325b6419b2e3af06e584d554495 Author: David Brooks '' Date: Thu May 28 17:53:01 2015 +0200 Can we not manually provide a 'translation?' commit 8f0a1b5cedc6925a6c8c50398ade813d7db90514 Merge: 8191a3d09 f47de7423 Author: David Brooks '' Date: Thu May 28 17:50:15 2015 +0200 Merge branch ''\''datastoreid'\''' into libbsml commit 8191a3d09d03a5a7e6a840accddafc08d8cd96ff Merge: 715e1b7b5 fa4e3c8da Author: David Brooks '' Date: Thu May 28 17:50:02 2015 +0200 Merge branch ''\''modelid'\''' into libbsml commit 715e1b7b5ae88195a957824f1008d86f93fa5289 Merge: 8f93dc21f e36e47d90 Author: David Brooks '' Date: Thu May 28 17:49:55 2015 +0200 Merge branch ''\''filefilter'\''' into libbsml commit d050696d2a337eb68ee297d191b7508508638a78 Author: Alan Garny '' Date: Thu May 28 17:49:36 2015 +0200 Slight update to the user documentation '[ci' 'skip].' Following the closing of issue '#621.' commit f47de742316e3ecb2d095ce79596014b0db861fc Author: David Brooks '' Date: Thu May 28 17:49:09 2015 +0200 Save the 'model'\''s' cmetaId and base XML URI with a simulation result set. commit fa4e3c8dac3da2b5f90f0d2fd9b2db7bb1ca69de Author: David Brooks '' Date: Thu May 28 17:47:17 2015 +0200 Provide access to the CellML file object from its runtime and to the underlying 'model'\''s' cmetaId. commit e36e47d909b4e170aa94e48b5d93d919e7fc8e3f Author: David Brooks '' Date: Thu May 28 17:43:29 2015 +0200 '"All' 'Files"' option should be last in list of file filters. commit 647660b131a63b6ffe6f92871ca7817a5e28c3e2 Author: Alan Garny '' Date: Thu May 28 17:36:27 2015 +0200 Single Cell view: fixed an issue with the Parameters pane looking blank at startup on OS X '(closes' '#621).' commit 8f93dc21f2fcb30f77c2f691f741969b708e5f38 Merge: b9372c080 c1a834dfa Author: David Brooks '' Date: Thu May 28 17:33:23 2015 +0200 Merge branch ''\''master'\''' into libbsml commit c1a834dfa5421bd22f9e8ddeb9f0b80fdb887c7d Author: Alan Garny '' Date: Thu May 28 17:27:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 10d8e23c751aeabf2daf92885a070572483897c0 Author: Alan Garny '' Date: Thu May 28 15:23:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit e35b22818655bc71d03847b20a521e652a2bf4ea Author: Alan Garny '' Date: Thu May 28 15:07:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' For the CellML Annotation view, the cleaning up offers another solution to issue '#405.' commit 086c441a1a16c8c0ee7ee7306cd413cddd73bb5c Author: Alan Garny '' Date: Thu May 28 14:54:59 2015 +0200 Single Cell view: fixed an issue with switching to a different file for the first time temporarily showing all the properties of the CVODE solver '(closes' '#619).' commit cd9d3e28d3e22f79e53eab798a1a80f04956b0f3 Author: Alan Garny '' Date: Thu May 28 14:49:59 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 74609c560a828d75ddaa7e5200cb349cd9e6bb55 Author: Alan Garny '' Date: Wed May 27 21:44:51 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit e740811b34f93b8151cafe248133f6a641e777b2 Merge: b6576bb2d 543305f36 Author: Alan Garny '' Date: Wed May 27 19:13:06 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 543305f362eced113e3b3ac9ef01e1b75e3e7a3f Merge: 8d6577117 e540214c0 Author: Alan Garny '' Date: Wed May 27 19:03:31 2015 +0200 Merge pull request '#622' from opencor/issue620 LLVM: upgrade to version 3.6.1 '(closes' '#620).' commit e540214c0184cb9a9d16c4826f1ebcfee4ca08cb Author: Alan Garny '' Date: Wed May 27 18:59:50 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 '(#620)' '[ci' 'skip].' commit cab62321fc17a26df02a1f700d08978a2bfdd188 Author: Alan Garny '' Date: Wed May 27 17:30:15 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 '(#620)' '[ci' 'skip].' commit 563c301189cd0faa7a01afc0648c5b814b5b755e Author: Alan Garny '' Date: Wed May 27 16:43:58 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 '(#620)' '[ci' 'skip].' Not sure how those ones $'didn\342\200\231t' make it in the previous $'commit\342\200\246' commit 0380c23cfb7cdbad4c719855ae0b9938b464024c Author: Alan Garny '' Date: Wed May 27 14:58:07 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 '(#620)' '[ci' 'skip].' commit d3bfc7153570e3ef7317377069ffc1d2dbc094a1 Author: Alan Garny '' Date: Wed May 27 13:45:16 2015 +0200 LLVM: some work towards upgrading to version 3.6.1 '(#620)' '[ci' 'skip].' commit 8d65771171e78586decfa8a77b1924d664dc58bd Author: Alan Garny '' Date: Wed May 27 10:53:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 0e0c20454b3a0ab21d5986f2dff12f7c2b4e9b57 Author: Alan Garny '' Date: Tue May 26 16:36:32 2015 +0200 Single Cell view: keep track of the position of the horizontal bar of the Parameters panel when switching file '(closes' '#618).' commit d7b82323aca59ac096a99ed146033191a6bc470f Author: Alan Garny '' Date: Tue May 26 16:35:29 2015 +0200 Single Cell view: keep track of the position of the horizontal bar of the Parameters panel when switching file '(#618)' '[ci' 'skip].' commit 2048d5b751092a640589d1118e074ab9773fb66e Author: Alan Garny '' Date: Tue May 26 16:32:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 497e1d3e9fa8afc9b1b799af53a835a7879210ee Author: Alan Garny '' Date: Tue May 26 16:12:24 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit dbd23b4cfc6e6481758e65d1e09f4282b1f2166a Author: Alan Garny '' Date: Tue May 26 16:10:34 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 8045ef416d062491e00b5e3b4608e2006911486c Author: Alan Garny '' Date: Tue May 26 16:05:31 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ffad99f355eead2b11bbaec992f6580aabed00e7 Merge: b32d812c8 75d48ca3e Author: Alan Garny '' Date: Tue May 26 15:09:26 2015 +0200 Merge pull request '#617' from opencor/issue616 Single cell view: fixed an issue with switching graph panels potentially shifting the contents of the Graphs panel '(closes' '#616).' commit 75d48ca3e0def9e2bbd7d734a353d25ca59e19b8 Author: Alan Garny '' Date: Tue May 26 15:06:30 2015 +0200 Single cell view: fixed an issue with switching graph panels potentially shifting the contents of the Graphs panel '(#616)' '[ci' 'skip].' commit b32d812c85059001856caacbb687e193cde22ad2 Author: Alan Garny '' Date: Tue May 26 14:58:54 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b6576bb2d5cbd9010b5ed2815307371ab4c97e46 Merge: b355e2ad5 19b0e3936 Author: Alan Garny '' Date: Fri May 22 19:10:33 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 19b0e3936e27f0a92493430b164a7893fdcb010d Author: Alan Garny '' Date: Fri May 22 19:08:46 2015 +0200 Travis CI: install CMake through on OS X. commit b355e2ad540003e5c36c9d9b5e00fbbdab62e7b1 Merge: 0271a41ca 257c554fb Author: Alan Garny '' Date: Fri May 22 19:05:56 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 257c554fbd405b09cf3d1978ae1884553f343315 Author: Alan Garny '' Date: Fri May 22 19:05:32 2015 +0200 Travis CI: install CMake through on OS X. Also some minor cleaning up. commit 0271a41ca82eb5c4deb8944ad40478918fa7ccaf Merge: 711755fbd 9e2e0f5ff Author: Alan Garny '' Date: Fri May 22 18:17:35 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 9e2e0f5ff4ad6e3c02bed29006e027b2b3df1831 Author: Alan Garny '' Date: Fri May 22 18:15:48 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 35acd8be0a6f8c3221ef9268e058b42ec75bd223 Author: Alan Garny '' Date: Fri May 22 18:13:05 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b7bdca3f9921f60ba4c8cbfa516726d4526dedb0 Author: Alan Garny '' Date: Fri May 22 18:12:30 2015 +0200 CMake: take advantage of the VERSION property in 'PROJECT()' '[ci' 'skip].' commit 6cf924cf269c3a831b9c1fbcc04e19f4d079aead Author: Alan Garny '' Date: Fri May 22 17:44:12 2015 +0200 Increased the requirement for CMake from 3.0 to 3.1 '[ci' 'skip].' commit 1594b671c7fe9d28addd7e3318611c74dffaf177 Author: Alan Garny '' Date: Fri May 22 17:30:58 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 711755fbdfebeb9b57bdff52eac82e897ab01a18 Merge: 84df6147a 1cbceb47e Author: Alan Garny '' Date: Fri May 22 14:25:02 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 1cbceb47e82eaeeea0b065e13d5fc130643d6aa9 Author: Alan Garny '' Date: Fri May 22 14:23:28 2015 +0200 libgit2: updated our plugin binaries since we are now relying on OpenSSL on Linux and OS X '[ci' 'skip].' commit 84df6147ac47fc70e39ec7bfe49608e624d44e74 Author: Alan Garny '' Date: Fri May 22 14:21:12 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' Done generating libgit2 plugin binaries, so re-enabling the other plugins. commit e85c65855d7fc895e14349d243ed8c7f75ebe956 Author: Alan Garny '' Date: Fri May 22 14:02:37 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' Getting ready to rebuild our libgit2 plugin binaries since we are now relying on OpenSSL on Linux and OS X. commit 5af2f7b8011ce46c4213b89de5fca1e98ec6cd56 Author: Alan Garny '' Date: Fri May 22 13:58:28 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' Getting ready to rebuild our libgit2 plugin binaries since we are now relying on OpenSSL on Linux and OS X. commit 09db4559ae2ca0788ad132c738396c20d99276d0 Merge: d774c0aaf 45b58611b Author: Alan Garny '' Date: Fri May 22 13:54:01 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 45b58611b7c2f1c0c30ce964036165a5b52c564b Author: Alan Garny '' Date: Fri May 22 13:51:08 2015 +0200 Windows: provide some information about the executable '(closes' '#614).' commit 1282bdcd2d7a5c0614f63a3e9fbe56a29396553f Author: Alan Garny '' Date: Fri May 22 13:49:01 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d774c0aaffe49bd02130508f1f0b1de2c333fbee Merge: ab2908624 c58a82a60 Author: Alan Garny '' Date: Thu May 21 19:06:34 2015 +0200 Merge branch ''\''master'\''' into issue593 commit ab290862423d8adecda5dcf17471d9b7b5ea6874 Merge: ca740747e 84f58e83c Author: Alan Garny '' Date: Thu May 21 19:04:54 2015 +0200 Merge branch ''\''master'\''' into issue593 commit c58a82a60e08721b56969308244edac5eb1c68a3 Author: Alan Garny '' Date: Thu May 21 19:03:25 2015 +0200 libgit2: make sure that OpenSSL is included on Linux and OS X '[ci' 'skip].' commit 84f58e83ca6c213683f46cd8b05d530765b60fdb Author: Alan Garny '' Date: Thu May 21 19:01:28 2015 +0200 Some slight improvement to our CMake file '[ci' 'skip].' commit ca740747e0ebebc7de6dfbca415949dbce3e9eda Author: Alan Garny '' Date: Thu May 21 18:19:49 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit c34e2e1002466e1c3a9675f03d4b2cca6adbfb2a Merge: 8b6ad8fed 81cc30ae2 Author: Alan Garny '' Date: Thu May 21 18:11:12 2015 +0200 Merge branch ''\''master'\''' into issue593 commit 8b6ad8fed13bcf2d70f8720c042fcef7ded184a8 Author: Alan Garny '' Date: Thu May 21 18:09:58 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 81cc30ae2e2905c741cc5bb5ea38a276b41c4274 Merge: ca200401e 17268b3ae Author: Alan Garny '' Date: Thu May 21 18:04:34 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ca200401e7f9504fab1bd9c366bfcfcaf60b7167 Author: Alan Garny '' Date: Thu May 21 18:04:03 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 26112d65152cd0f2b55789bd41917ff7e152ddd4 Author: Alan Garny '' Date: Thu May 21 15:58:52 2015 +0200 PMR window: some work on allowing a workspace to be cloned '(#593)' '[ci' 'skip].' commit 17268b3ae31442f5aa821f8c027e7b6627d08802 Author: Alan Garny '' Date: Thu May 21 15:06:27 2015 +0200 libgit2: some minor cleaning up '[ci' 'skip].' commit b0374cdae82070d5829f2bb447d21ce9c72f3ad6 Author: Alan Garny '' Date: Thu May 21 15:00:12 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ba49d45722d6c3c40692200eab6954e3be9e4985 Merge: 2e34fa2da 69d59920c Author: Alan Garny '' Date: Thu May 21 11:50:18 2015 +0200 Merge pull request '#613' from opencor/issue608 Add support for Git '(closes' '#608).' commit 69d59920cb3c0faf57e37591cf8d95b04e8ebe99 Author: Alan Garny '' Date: Thu May 21 11:29:35 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' Re-enabled the other plugins. commit f4ca29bb5ef975f3492ca34bcf00559399e3d73d Author: Alan Garny '' Date: Thu May 21 11:25:06 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' Generated the binaries for the different platforms that we support. commit 2b5ec5d9e08da1b1188cf974776d77b60f5605d9 Author: Alan Garny '' Date: Thu May 21 11:24:06 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4e00df69eaa3a269e3c811c579a13f5a5d158389 Merge: 0e645f58a 2e34fa2da Author: Alan Garny '' Date: Thu May 21 10:56:00 2015 +0200 Merge branch ''\''master'\''' into issue608 commit 2e34fa2da107c5dc265ed80d53741fe7d5f63796 Author: Alan Garny '' Date: Thu May 21 10:48:28 2015 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 333299e397986014df9dc5243304570b6eaf4549 Author: Alan Garny '' Date: Thu May 21 10:30:57 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d4e78eedf4667f66f2391ff6316ae25c7649777 Author: Alan Garny '' Date: Wed May 20 18:51:10 2015 +0200 Updated the user documentation and downloads section '[ci' 'skip].' commit 10ff4d512f18ebbae305760db7d1f62ad02a83b8 Author: Alan Garny '' Date: Wed May 20 18:43:28 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit b9372c080a0d187014e44cfcfa6a285bced0d95a Author: David Brooks '' Date: Wed May 20 17:43:27 2015 +0200 Add template code for BioSignalML data store interface. commit 0c023bb3e389429def124f8c7a87aea26de3c84e Author: Alan Garny '' Date: Wed May 20 00:55:11 2015 +0200 Keeping in sync with issue '#611' '[ci' 'skip].' commit 84f36ec21649f0da84b45dc62d1ee39240086288 Author: Alan Garny '' Date: Tue May 19 19:29:54 2015 +0200 Keeping in sync with issue '#611' '[ci' 'skip].' commit 34491f14c2f2df504293a24c5deb9c7d79d253d7 Author: Alan Garny '' Date: Tue May 19 19:16:30 2015 +0200 Keeping in sync with issue '#611' '[ci' 'skip].' commit 5e30f218bb9a80bf8aaebbb1e72c1794b8e558a0 Author: Alan Garny '' Date: Tue May 19 14:23:14 2015 +0200 Slight update to the developer documentation following the release of Xcode 6.3.2 '[ci' 'skip].' commit 257109a6dad33954ec656aae4f63381268bc88c7 Author: Alan Garny '' Date: Mon May 18 19:38:08 2015 +0200 Slight update to the user documentation '[ci' 'skip].' commit 3faa7a518692931ac15d99acfb6fcaa8be166b4b Author: Alan Garny '' Date: Mon May 18 18:30:32 2015 +0200 Some minor cleaning up following issue '#580' '[ci' 'skip].' commit e49a0c483079fd7443efa849202254551bd49d82 Author: Alan Garny '' Date: Mon May 18 17:39:00 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute '10^x' '(#611)' '[ci' 'skip].' commit 32f098dae8cbcd468e535b42d517268201dc0361 Author: Alan Garny '' Date: Mon May 18 17:33:01 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute '10^x' '(#611)' '[ci' 'skip].' commit e4e1cbc7a724c9df85bf63c1a597487116a3b8f0 Author: Alan Garny '' Date: Mon May 18 17:14:22 2015 +0200 Fixed a problem on OS X with OpenCOR crashing on Mac OS X 10.7 and OS X 10.8 if a model needs to compute '10^x' '(#611)' '[ci' 'skip].' commit 17331d79245293c103247ea41acd42142abc9f3f Author: Alan Garny '' Date: Mon May 18 14:28:38 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b9fb87af200ef1cd9937fffa963c46dd4d9691fb Author: Alan Garny '' Date: Mon May 18 13:14:25 2015 +0200 Slight improvement to our Qt message pattern '[ci' 'skip].' commit 0e645f58a06e3c19a0497fe272781912b0c84edd Merge: 7eff4f09f d2f8928cb Author: Alan Garny '' Date: Mon May 18 10:38:51 2015 +0200 Merge branch ''\''master'\''' into issue608 commit d2f8928cb870bfea74b10dd192b374a43b63b19c Author: Alan Garny '' Date: Sat May 16 16:02:33 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7c371e38a511f3f2aa2998309ed5141bb337b471 Author: Alan Garny '' Date: Sat May 16 14:34:44 2015 +0200 Single Cell view: very very tiny improvement to the accuracy of our timer '[ci' 'skip].' This is only relevant when we are running a simulation, pausing it and resuming it. Indeed, we used to restart the timer, but 'it'\''s' the same as starting it, except that 'QElapsedTimer::restart()' also returns the time elapsed since the previous start. We 'don'\''t' need that information, so we might as well simply call 'QElapsedTimer::start()...' commit 7eff4f09f011e56b748d0933bbd2b2d6b1d8a268 Merge: e472c4bf2 6ad8eef51 Author: Alan Garny '' Date: Fri May 15 01:54:05 2015 +0200 Merge branch ''\''master'\''' into issue608 commit 6ad8eef5167175408e280a60f8f6fc7f499eb41e Author: Alan Garny '' Date: Fri May 15 01:47:42 2015 +0200 Compiler plugin: $'don\342\200\231t' rely on a temporary file anymore '(closes' '#610).' How that happened, I $'don\342\200\231t' know, but in commit c0d0beccb60c995128afae8acb4294ffb425f6c2, I effectively built the LLVM libraries without the import/export information for the MemoryBuffer class. This time, it should be fine. At least, there are now more symbols in the 'DLLs!' commit e472c4bf2c952112ec5ad80d512219c1a9e28228 Author: Alan Garny '' Date: Thu May 14 20:36:10 2015 +0200 Merge branch ''\''master'\''' into issue608 commit c0d0beccb60c995128afae8acb4294ffb425f6c2 Author: Alan Garny '' Date: Thu May 14 20:30:38 2015 +0200 Compiler plugin: $'don\342\200\231t' rely on a temporary file anymore '(closes' '#610).' commit bd88dd0345e92cc421078aca442f5cf29fd0d3d2 Author: Alan Garny '' Date: Thu May 14 18:51:25 2015 +0200 Compiler plugin: some work on not having to rely on a temporary file anymore '(#610)' '[ci' 'skip].' commit dabc9f2abee713d994a0923bd442a52ae68cb69b Author: Alan Garny '' Date: Thu May 14 18:20:52 2015 +0200 Compiler plugin: some work on not having to rely on a temporary file anymore '(#610)' '[ci' 'skip].' commit dcaac7a218a06ce2422cfa1835a723e6103240e1 Author: Alan Garny '' Date: Thu May 14 17:16:52 2015 +0200 Merge branch ''\''master'\''' into issue608 commit a1b3323672f9ee3955c3c72991e1582eaa9ac522 Author: Alan Garny '' Date: Thu May 14 17:03:34 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9ec57052d6331859d24810c4f226fc8659ac91c9 Author: Alan Garny '' Date: Thu May 14 16:50:35 2015 +0200 Windows: some minor cleaning up following commit 63e164c6424dc855a4e46b835a777f6f84c617dc '[ci' 'skip].' commit 635624261d79f1bf40ac6378c93da210ed40f120 Author: Alan Garny '' Date: Thu May 14 16:22:47 2015 +0200 Windows: some minor cleaning up '[ci' 'skip].' commit 77120ca870c33631c7efdb377c676e280ec1a6eb Author: Alan Garny '' Date: Thu May 14 09:07:24 2015 +0200 Windows: some minor cleaning up following commit 63e164c6424dc855a4e46b835a777f6f84c617dc '[ci' 'skip].' Note: we still need to do something similar about our use of the CellML API. commit 766c4774ec065e859fa77da1adb8da7804259296 Author: Alan Garny '' Date: Tue May 12 20:05:27 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' commit 105b84ff837645be6c4314da65952c9ca772cbad Author: Alan Garny '' Date: Tue May 12 19:56:55 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' commit 63e164c6424dc855a4e46b835a777f6f84c617dc Author: Alan Garny '' Date: Tue May 12 19:34:10 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit fb637bafe5bd7566901b1e0e80d5670deed345e4 Author: Alan Garny '' Date: Tue May 12 16:36:55 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' commit caca6d613c00c646fb35fe3d3e75a8cf709aef72 Author: Alan Garny '' Date: Tue May 12 16:03:30 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' commit a6f8cbf1153d360df38292fec7d696048f011eae Author: Alan Garny '' Date: Tue May 12 10:06:35 2015 +0200 Some work towards adding support for Git '(#608)' '[ci' 'skip].' commit daaa76b7ae89400719501bd0784b696b5c602dbb Author: Alan Garny '' Date: Tue May 12 09:25:48 2015 +0200 jQuery: upgraded to version 2.1.4 '(closes' '#609)' '[ci' 'skip].' commit 79ad072b97d8bfe5d5890b5632ec79a89dd3c78b Author: Alan Garny '' Date: Mon May 11 16:37:23 2015 +0200 jQuery: upgraded to version 2.1.4 '(closes' '#609).' commit 74385418c70cb7e7df51c59a596d68ee30bc97c6 Author: Alan Garny '' Date: Mon May 11 16:29:42 2015 +0200 IDA solver: done with providing access to other IDA parameters '(closes' '#605).' commit 2e12aba0709e51102569a0e4655685c148264a29 Author: Alan Garny '' Date: Mon May 11 16:23:36 2015 +0200 IDA solver: some work on providing access to other IDA parameters '(#605)' '[ci' 'skip].' commit 8c26d467fef66aa9df4ec4ced0b2d975f625c15a Author: Alan Garny '' Date: Mon May 11 16:17:35 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ce2719c53ab8978f24b8afa9b9aa48313f3618df Author: Alan Garny '' Date: Mon May 11 16:06:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit ec1a90ae0fadd69de36942f9f7359a1e5dc2f4f3 Author: Alan Garny '' Date: Mon May 11 15:25:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d61ec7082d1bf6c5bc80db252875b221825c6432 Author: Alan Garny '' Date: Mon May 11 14:59:36 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit f72fea9156fa123591c58112e6ab4ce480d4fd7e Author: Alan Garny '' Date: Mon May 11 14:55:45 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 772366bcab75353f2eeb6e000187b0f726381d39 Author: Alan Garny '' Date: Mon May 11 10:24:32 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1dbf94efc2452a77d8868c1976f443a5d21ffea6 Author: Alan Garny '' Date: Thu May 7 20:08:03 2015 +0200 Windows: updated our OpenSSL binaries '[ci' 'skip].' The newest binaries are from 20 March 2015 and for OpenSSL version 1.0.2a. commit e038bd108cad42943b2babfd2fb8afd57b96a287 Merge: a1c19f375 2c1aaf8a5 Author: Alan Garny '' Date: Thu May 7 19:31:17 2015 +0200 Merge pull request '#607' from opencor/issue604 CVODE solver: provides access to other CVODE parameters '(#604).' commit 2c1aaf8a5f8eaf8527eed0f028e678de7ef443cf Author: Alan Garny '' Date: Thu May 7 18:34:47 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters '(#604).' commit 0eff8df162e91c0c20ce5fd3df2c20f27329a11a Author: Alan Garny '' Date: Thu May 7 18:12:48 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters '(#604)' '[ci' 'skip].' MSVC 2013 $'doesn\342\200\231t' support $'constexpr\342\200\246' commit 2dade127908fb89bde371ef29bf48a7424625c89 Author: Alan Garny '' Date: Thu May 7 18:02:55 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters '(#604)' '[ci' 'skip].' commit 10a1653a456b0d9294d375ef0aee6956156f39a4 Author: Alan Garny '' Date: Thu May 7 17:58:53 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters '(#604)' '[ci' 'skip].' commit fead0a3fc14205870487f95e2d66cbf36f2e2417 Author: Alan Garny '' Date: Thu May 7 17:28:56 2015 +0200 CVODE solver: some work on providing access to other CVODE parameters '(#604)' '[ci' 'skip].' commit a1c19f37531d2c178263cc3f45b002cfbbb0f7d3 Author: Alan Garny '' Date: Thu May 7 17:06:46 2015 +0200 Travis CI: allow for all branches to trigger a Travis CI job '[ci' 'skip].' commit 14a137fa5bd33a1b25e0b856374675fde48b976d Author: Alan Garny '' Date: Thu May 7 16:50:37 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit e046e530d16396d03536de7e5c83942be98ab167 Author: Alan Garny '' Date: Thu May 7 14:58:48 2015 +0200 Some minor cleaning up. commit 679e9067b041c9898fcf4419b6d27c38ca2eb641 Author: Alan Garny '' Date: Thu May 7 14:57:09 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit af8fe911bdefc0235e4f58e0edfead771f8e3676 Author: Alan Garny '' Date: Thu May 7 14:37:31 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 5613d1872f2263a4e18a1f81cd11de27294a9ac8 Author: Alan Garny '' Date: Thu May 7 14:22:05 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 9fdae7c6135458f5235681cd3054bd862306c2fb Author: Alan Garny '' Date: Thu May 7 13:25:14 2015 +0200 Some minor cleaning up. commit 0a7848afebb0b3f2067dc5ef3dc1e76d25ea20ce Author: Alan Garny '' Date: Thu May 7 11:41:12 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit de906df17f43414e4b184fa1f3eb1fddce19b689 Author: Alan Garny '' Date: Wed May 6 20:10:56 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 2aa5cc371db77e7251f044fdfcca13c59db88f97 Author: Alan Garny '' Date: Wed May 6 19:59:37 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit 38d007591e65d5a38a4c76f5fa1fffc69c8bd3be Author: Alan Garny '' Date: Wed May 6 19:25:03 2015 +0200 Some minor cleaning up. commit b0f68a9cf77ebcccf1c95c25f764896760c637fd Author: Alan Garny '' Date: Wed May 6 19:05:53 2015 +0200 Some minor cleaning up. commit eda340372fdbda16a11b106e8ea1bddf6f606039 Author: Alan Garny '' Date: Wed May 6 18:14:09 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit 828a29f8c76d67928d60322fabc5db431ea7ffde Author: Alan Garny '' Date: Wed May 6 17:14:04 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit e1bfd9fa4d2351bb9b1b4d2b72d41ce66851c295 Author: Alan Garny '' Date: Wed May 6 16:50:55 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit a0e76c05fd252f9ff69c17dd34e886036cbdaf69 Author: Alan Garny '' Date: Wed May 6 15:42:38 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit 53388ddc4af282a8c79398cca87a5e553b59edfb Author: Alan Garny '' Date: Wed May 6 15:32:42 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit d7ad90dcdd475af619ceca81edfdc8ce5c54a3db Author: Alan Garny '' Date: Wed May 6 15:07:22 2015 +0200 Slight improvements to our property editor widget. Had forgotten to propagate the 'booleanPropertyChanged()' signal. commit bd9e7d1196ad55ecff13a44dc5d119a4b0e179b7 Author: Alan Garny '' Date: Wed May 6 14:36:48 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit b88884f9130333d074e8e80662e7bda8591dcc60 Author: Alan Garny '' Date: Wed May 6 14:33:08 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 49b18ed6272e2d09d00e61179734a6fe518ef6f5 Author: Alan Garny '' Date: Wed May 6 14:00:03 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 9ab7462b65e144a79b2f207c4f2bd282d32f481f Merge: 9f2e70cd8 df70efa0f Author: Alan Garny '' Date: Wed May 6 13:12:36 2015 +0200 Merge branch ''\''master'\''' into issue604 commit df70efa0f2b0e8592b69a3170038521dee15cd3d Author: Alan Garny '' Date: Wed May 6 12:57:51 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606)' '[ci' 'skip].' commit e1e2f806ea4ec9eca461c4ae150afbb735f4cd2b Author: Alan Garny '' Date: Wed May 6 11:39:32 2015 +0200 CellML editing views: more precise about what is actually done during CellML validation '(closes' '#606).' commit c0bf59f144a688e76bdab8ca7ff924e4541e7bfa Author: Alan Garny '' Date: Tue May 5 23:38:27 2015 +0200 Documentation: slight update to the developer documentation following the release of the unified installer '[ci' 'skip].' commit 9f2e70cd80f2e7aa7de24c90634f3ed4ed967d84 Author: Alan Garny '' Date: Tue May 5 19:00:27 2015 +0200 Some minor cleaning up. commit 2cc8ce51079c71f8845f6efab670b9c25f5efb3a Author: Alan Garny '' Date: Tue May 5 18:57:22 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit f5178f4a95cadb30e3643bb3f0ba6349769d61fb Author: Alan Garny '' Date: Tue May 5 15:49:39 2015 +0200 Some minor cleaning up. commit f8e74964f07787e1969c19ca3221e4afb86c477b Author: Alan Garny '' Date: Tue May 5 11:06:50 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 6bfe53e4f989ed99d542dee2636e9f0a4669c4c1 Author: Alan Garny '' Date: Tue May 5 10:46:32 2015 +0200 Some minor cleaning up. commit 512ab8936aec2c174a8561cd9b610d5aadbb6b06 Author: Alan Garny '' Date: Tue May 5 10:16:33 2015 +0200 Documentation: slight update to the CellML Text view documentation '[ci' 'skip].' commit 8b6a9c357318b98790fb4decf230c55398ecd3e5 Author: Alan Garny '' Date: Tue May 5 09:48:28 2015 +0200 Some minor cleaning up. commit b566918e1a4d5cab0f459aeb33bb6b7881fade9f Author: Alan Garny '' Date: Mon May 4 18:13:00 2015 +0200 Some minor cleaning up. commit febf3801a79ef0da86cd310dfe533e7f1e814f13 Author: Alan Garny '' Date: Mon May 4 18:07:56 2015 +0200 Some minor cleaning up. commit 31f060bc54ffff1efb89e84074cf90688c91a594 Author: Alan Garny '' Date: Mon May 4 18:04:27 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 4acde8fbe057e4f65cae909a28a439f4f6f936a0 Author: Alan Garny '' Date: Mon May 4 17:49:10 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit bcf5a3fd02a7a35bbfd73d3f48084a9b1e87bbd9 Author: Alan Garny '' Date: Mon May 4 17:28:54 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 2f8497e5b5af6fca60b91885ea360f73144d8f42 Author: Alan Garny '' Date: Mon May 4 16:45:32 2015 +0200 Some minor cleaning up. commit 853a51e737d96f3baaf8959d7030d28a0ba8fe4a Author: Alan Garny '' Date: Mon May 4 16:40:45 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit 033b2493751002fabe822cda43a6ba1543e2b6cf Author: Alan Garny '' Date: Mon May 4 15:06:03 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit f3664ee3143ca7f483c202484a9e28e8373af037 Author: Alan Garny '' Date: Mon May 4 14:35:50 2015 +0200 CVODE solver: some work on providing access to other COVDE parameters '(#604).' commit d6cddd415459b43bb15fdf422fbda812cb64b9de Author: Alan Garny '' Date: Mon May 4 11:25:47 2015 +0200 Documentation: slight update to the CellML Text view documentation '[ci' 'skip].' commit 3ff61fa192171941aa99d864f9a4b7c32263c4c8 Author: Alan Garny '' Date: Thu Apr 30 13:13:09 2015 +0200 CellML Tools plugin: moved it from the Miscellaneous section to a new Tool section '(closes' '#596).' commit 8c87d80bce189e05325e25e0221959891bd9669d Author: Alan Garny '' Date: Thu Apr 30 13:09:24 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 2eb9ad9a19be03a1265d95533ec0c278c353645e Author: Alan Garny '' Date: Thu Apr 30 13:07:53 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section '(#596)' '[ci' 'skip].' commit 7cdac26a43939a76d7eeb933bff6d64d21000224 Author: Alan Garny '' Date: Thu Apr 30 13:04:58 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section '(#596)' '[ci' 'skip].' commit e995aca51330fcfdb061151650af08f6ad6b4e44 Author: Alan Garny '' Date: Thu Apr 30 12:51:14 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section '(#596)' '[ci' 'skip].' commit cf252d9ee3a268dd6abcad5b2b6111e1074f5a08 Author: Alan Garny '' Date: Thu Apr 30 12:40:53 2015 +0200 CellML Tools plugin: some work on moving it from the Miscellaneous section to a new Tool section '(#596)' '[ci' 'skip].' commit 46eee11b4be5f3575315f00c4a0dcac5b2384f8c Author: Alan Garny '' Date: Thu Apr 30 12:30:26 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 1e3917b050e9e28caaaeff94dcaccf89a45eff5a Author: Alan Garny '' Date: Wed Apr 29 18:51:40 2015 +0200 SUNDIALS library: upgraded to version 2.6.1 '(closes' '#580).' commit 51af534c1f09221ed2abc2d51a4e74202352d53d Author: Alan Garny '' Date: Wed Apr 29 18:41:53 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 '(#580)' '[ci' 'skip].' commit 4748fddb6f1288d3a916a271bf61bed58cdbc455 Author: Alan Garny '' Date: Wed Apr 29 18:14:28 2015 +0200 SUNDIALS library: upgraded to version 2.6.1 '(closes' '#580).' commit 513d24df478aceda22cc473c6f02d21ddf6800fc Author: Alan Garny '' Date: Wed Apr 29 17:43:46 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 '(#580)' '[ci' 'skip].' commit 437bb3000097f9ee746d4aeece6cc664baa4c07d Author: Alan Garny '' Date: Wed Apr 29 17:43:04 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 '(#580)' '[ci' 'skip].' commit 0b2a705f1a181f1042da6edc748f9ed90fe1a71a Author: Alan Garny '' Date: Wed Apr 29 17:37:37 2015 +0200 Documentation: slight update to the OpenCOR version of the user documentation '[ci' 'skip].' In the previous OpenCOR version of the user documentation, some images were not shown in the SingleCellPlugin help. Not sure $'it\342\200\231s' worth releasing a 0.4.1 of OpenCOR just for that $'though\342\200\246' commit 76bfe15f66cce385df826bf4abfde461159682ff Author: Alan Garny '' Date: Wed Apr 29 17:20:44 2015 +0200 SUNDIALS library: some work on upgrading to version 2.6.1 '(#580)' '[ci' 'skip].' commit 93c03b2c98d920294f7c5df39895cc3b66f28ca0 Author: Alan Garny '' Date: Wed Apr 29 16:59:21 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 7f2bdeee6728a7ea3d55647c10aac2177c4f1f50 Author: Alan Garny '' Date: Wed Apr 29 16:35:59 2015 +0200 QScintilla plugin: done upgrading to version 2.9 '(closes' '#598).' commit 975c2188d5ab81622d89f918df209762c9643b5f Author: Alan Garny '' Date: Wed Apr 29 16:21:14 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 '(#598)' '[ci' 'skip].' commit 00f1236d6dda28bdb0b311355f3006cab7280586 Author: Alan Garny '' Date: Wed Apr 29 16:15:58 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 '(#598)' '[ci' 'skip].' commit 03862fe40eef60ae6cc131d13fd30348c8129324 Author: Alan Garny '' Date: Wed Apr 29 16:06:37 2015 +0200 Back to generating snapshots '[ci' 'skip].' commit 1fd00cf8f8bd19fc7bf30780cd74d13390077d11 Author: Alan Garny '' Date: Wed Apr 29 16:04:42 2015 +0200 QScintilla plugin: some work on upgrading to version 2.9 '(#598)' '[ci' 'skip].' commit 5e76221ae12ef95e5326781c26fca910be130983 Author: Alan Garny '' Date: Wed Apr 29 14:50:05 2015 +0200 Version 0.4. commit d25761b9288b80fed2a5073fbcdf236f8d87c1d2 Author: Alan Garny '' Date: Wed Apr 29 13:26:35 2015 +0200 Slight update to the developer documentation '[ci' 'skip].' commit cc7afe8f2b4b342d8443cf4d68344091d84e9f14 Author: Alan Garny '' Date: Wed Apr 29 10:36:12 2015 +0200 User documentation: added an '"How' to get 'started"' section '(closes' '#521).' commit d581e1b6acd7482d2fa7047ab7e6e8f8a68a66eb Author: Alan Garny '' Date: Tue Apr 28 19:53:18 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit a3d9a14cb00055a707aed24afa1ef0d323da201f Author: Alan Garny '' Date: Tue Apr 28 18:45:14 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit d6775f2eb6a5f809a046a510df9b9fe00bbf2b36 Author: Alan Garny '' Date: Tue Apr 28 16:04:05 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 7cb45194e0868bfd19062913783502b68ea38cad Author: Alan Garny '' Date: Tue Apr 28 10:45:52 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 987612a4b3f31b385968db6d78d24ca932db5ebe Author: Alan Garny '' Date: Tue Apr 28 10:40:28 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 2323e3148b460ebb5aee4e99cb3dad9bac187498 Author: Alan Garny '' Date: Tue Apr 28 09:51:17 2015 +0200 Central widget: display a warning message if a file '(incl.' remote 'file)' cannot be opened '[ci' 'skip].' commit 822883f5e1bd69c22bb57b7a2b72b934800953b8 Author: Alan Garny '' Date: Tue Apr 28 09:45:50 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit c701a35765c344316d7ff31d430f08f791420b84 Author: Alan Garny '' Date: Mon Apr 27 21:45:07 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 024879ff16a8e47e2d9821f6f3649a89804f9d62 Author: Alan Garny '' Date: Mon Apr 27 20:26:08 2015 +0200 Central widget: display a warning message if a file '(incl.' remote 'file)' cannot be opened '[ci' 'skip].' commit 2b1b08b46378a6dddb08222ad8e26ad43e322229 Author: Alan Garny '' Date: Mon Apr 27 20:02:42 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 56fbd215904148630462214e4d1efc2454a9c350 Author: Alan Garny '' Date: Mon Apr 27 18:47:15 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit e4414386fba64214117dd928b1da3f3b3efa8d95 Author: Alan Garny '' Date: Mon Apr 27 18:00:19 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 5e7ee45ec5048e887cb0b7b82f39b1966cdfcfca Author: Alan Garny '' Date: Mon Apr 27 16:50:14 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 37cd00280a7e1657249829a50d61b145bf658d57 Author: Alan Garny '' Date: Mon Apr 27 16:30:59 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 6dadacc51dc00c310e1f4419b2cf621a0ee47328 Author: Alan Garny '' Date: Mon Apr 27 16:04:51 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 153887e1bbe84e6e00ac7e3f082d573e113678d0 Author: Alan Garny '' Date: Mon Apr 27 15:43:47 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 5ed7c8c2ffe773570d9fa6640a33ebd80860259a Author: Alan Garny '' Date: Mon Apr 27 15:10:04 2015 +0200 User documentation: some work on adding an '"How' to get 'started"' section '(#521)' '[ci' 'skip].' commit 620d4aafefbd7746053bd0636eacdecf5ea1f5d5 Author: Alan Garny '' Date: Mon Apr 27 14:23:10 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 95cfb73f853515deff94932d0218ff698d695086 Author: Alan Garny '' Date: Mon Apr 27 13:27:14 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c118882286a55d64f32c227a6a0cc4fd3b94468d Author: Alan Garny '' Date: Mon Apr 27 13:07:03 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7de6c040da73f9d49ef54ae3b7570c9c941cde04 Author: Alan Garny '' Date: Mon Apr 27 11:41:51 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit fe8447d47470ffb8a95372142ac597ecc1ea8f20 Author: Alan Garny '' Date: Mon Apr 27 11:37:42 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit d41ed2aa5f3993392ce62020acb58a378f5631f3 Author: Alan Garny '' Date: Mon Apr 27 10:33:27 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 9bbfdcba465e91ed5d67396cb73ff216144a2c0e Author: Alan Garny '' Date: Mon Apr 27 09:08:35 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit f4572a961f66bcc327553c599014bf19b91a1a70 Author: Alan Garny '' Date: Sun Apr 26 17:04:23 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 3213b7410221f39f6e2ed8f4118d2d9d5c8322f6 Author: Alan Garny '' Date: Sun Apr 26 16:49:02 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 4e71b87630387721c1743ab3751b91a678838471 Author: Alan Garny '' Date: Sun Apr 26 10:36:30 2015 +0200 Some minor cleaning up '[ci' 'skip].' commit 6c94d21fc2e4946a2e13a861396e20c61f08f950 Author: Alan Garny '' Date: Sat Apr 25 11:00:57 2015 +0200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6226ce1acdb4f79654789408e4e40d8f22e1cd18 Author: Alan Garny '' Date: Sat Apr 25 06:59:27 2015 +0400 Some minor cleaning up '[ci' 'skip].' commit 040aafbd73407ebad45d813ecfe5351b05bf9581 Author: Alan Garny '' Date: Sat Apr 25 06:55:41 2015 +0400 Developer documentation: slight update following the release of Qt Creator 3.4.0 '[ci' 'skip].' commit ac5286b242ec7de42932793c6987f14ebc50b26d Author: Alan Garny '' Date: Thu Apr 23 13:24:37 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit d234887045f73abc1b980f20dc14c7f1901091a1 Author: Alan Garny '' Date: Thu Apr 23 12:58:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 82bade5a1873331a54c6e6ad478b9b1ae03e9000 Author: Alan Garny '' Date: Thu Apr 23 12:14:00 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c69999c75e99aa1b2ed2b9fb0953600759a1b4af Author: Alan Garny '' Date: Thu Apr 23 10:55:01 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 461de235974aa6e247dc166da29e3d95c7dc846f Author: Alan Garny '' Date: Wed Apr 22 19:14:20 2015 +1200 Developer documentation: slight update following the release of Xcode 6.3.1 '[ci' 'skip].' commit 621373ab969d1a60da690da98b51d0543c6f9781 Author: Alan Garny '' Date: Wed Apr 22 17:54:10 2015 +1200 CellML Text view: fixed an issue with OpenCOR crashing when the CellML Text view gets updated when 'it'\''s' not visible anymore '(closes' '#601).' commit a02bb3674542b510c11673625847d54b88b62093 Author: Alan Garny '' Date: Wed Apr 22 16:54:48 2015 +1200 CellML Text view: 'didn'\''t' update the data information when initialising a new file '[ci' 'skip].' This $'wasn\342\200\231t' $'\342\200\230critical\342\200\231,' but not neat 'either!' commit e413f89f8321f6b466c283bc10c343a2a75595ae Author: Alan Garny '' Date: Wed Apr 22 16:53:32 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 4f4367bef65d153c97bd8de4d7dd87096a1525f1 Author: Alan Garny '' Date: Wed Apr 22 16:27:10 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 1eced659ad344bfa95ac70b12b0968e058364b47 Author: Alan Garny '' Date: Wed Apr 22 16:06:22 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7cfc93b8eaa336c5e0f3c38e7fcc33fffe8b1561 Author: Alan Garny '' Date: Wed Apr 22 16:02:14 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 1f05a6d27f34daa2d793293dbda9d461d2c172ff Author: Alan Garny '' Date: Wed Apr 22 15:44:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 49f048985a09862ae12e065ad807b38930e08e2b Author: Alan Garny '' Date: Wed Apr 22 15:39:06 2015 +1200 CellML Text view: allow '"encapsulation"' and '"containment"' in a group definition to have a cmeta:id '(closes' '#600).' commit 7aeab2ea4b94baa6aa0f37f5f85fd2efe853088f Author: Alan Garny '' Date: Wed Apr 22 15:14:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 3427dba478b4a1c52492852c051b6e2252493eff Author: Alan Garny '' Date: Wed Apr 22 14:57:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 0c84c4c29ed21bb62d3fa065bac6fd4bb66d04c1 Author: Alan Garny '' Date: Wed Apr 22 13:57:43 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8a56327af3ee4588c51a95eacbc9fbf13924bb34 Author: Alan Garny '' Date: Wed Apr 22 12:51:28 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 140c7d2481c9d935ecacf231a4a52899dcafaa2c Author: Alan Garny '' Date: Wed Apr 22 11:57:49 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 9d3205821e105d26fb608e2e9cd59952e379bfbb Author: Alan Garny '' Date: Wed Apr 22 11:53:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit f3a55fbdd11b9d46f51873e5a43e4cbbc7e709e0 Author: Alan Garny '' Date: Wed Apr 22 11:44:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit d73ec92e5dcceedfc8a5f90d311b256bc749f7c1 Author: Alan Garny '' Date: Wed Apr 22 11:11:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit dca0be41018901ffc3537b05aa9ed658b6a31f74 Author: Alan Garny '' Date: Wed Apr 22 10:54:49 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4ee1ead9b1b3f43c86353b2312ff4cd463e55c25 Author: Alan Garny '' Date: Wed Apr 22 01:50:20 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' Our use of KaTeX in our documentation generates some warnings that read: QCoreTextFontDatabase::fontEngine: CGFontCreateWithDataProvider failed Not sure why they get generated since KaTeX is able to render the equations. Whatever the case, we $'don\342\200\231t' want to see debug/warning message when in release mode. commit 66d7a1bd4876871aab3b37aeb160c481c97fdc7a Author: Alan Garny '' Date: Wed Apr 22 00:35:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 5cbd61516c40ebddbad130ffe0a365589233d5dd Author: Alan Garny '' Date: Tue Apr 21 23:56:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8f4bd22e7f259a89c3489c16b1e91c1feedf0fc1 Author: Alan Garny '' Date: Tue Apr 21 23:51:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4898aac2c8f32c30efa4f20a1c35218e327e5f89 Author: Alan Garny '' Date: Tue Apr 21 23:49:56 2015 +1200 Documentation: add KaTeX for math typesetting support '(closes' '#599).' commit de7bb6b66c0c4c94d44553949b5835fa9722f941 Author: Alan Garny '' Date: Tue Apr 21 23:48:54 2015 +1200 Documentation: add KaTeX for math typesetting support '(closes' '#599).' commit a1c68868cb2f167b1ae400d95241b2efc6d59899 Author: Alan Garny '' Date: Tue Apr 21 16:35:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit ba23723249058e19bf0374d67e9e070414d9f4eb Author: Alan Garny '' Date: Tue Apr 21 16:00:00 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6110e23e3da677c447cd22b330fc381f70244452 Author: Alan Garny '' Date: Tue Apr 21 12:57:02 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit fdaf57ecbdbb1bb010fafb1ce59aaf5ec1775338 Author: Alan Garny '' Date: Tue Apr 21 12:56:32 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7250eba6856225dd7cbe0ac74b72fed0839221d3 Author: Alan Garny '' Date: Tue Apr 21 12:25:03 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c02c2b8485984fa2c4f56540c4400585a694826d Author: Alan Garny '' Date: Tue Apr 21 12:08:25 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit fcc5d3a59e09fc3cc864ac4d4b524478b57e55ed Author: Alan Garny '' Date: Tue Apr 21 11:24:34 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit ce168169f2427e20528be758835dc41d9b3bfc2b Author: Alan Garny '' Date: Tue Apr 21 11:20:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4f7ccdc34c2a80c4b004e2df3e6b123b90377bf3 Author: Alan Garny '' Date: Tue Apr 21 10:38:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 335173bd7257de1a09730b9dffef3dc22c2dfe0b Author: Alan Garny '' Date: Mon Apr 20 19:15:29 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8edf72b00fbeb4d33e9ff89965267d846619c9aa Author: Alan Garny '' Date: Mon Apr 20 19:12:24 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8b05bd8da2bac9827b01ec9a821e3947bda1875c Author: Alan Garny '' Date: Mon Apr 20 18:59:05 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit eb757662458e124909ca72563a597ba9595b066c Author: Alan Garny '' Date: Mon Apr 20 18:06:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 5d79ea16773cb77422a21603741534692e15818d Author: Alan Garny '' Date: Mon Apr 20 16:46:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 5964fdbe49b7cd105793fd40f29eedf423a38205 Author: Alan Garny '' Date: Mon Apr 20 15:26:11 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 307603021e12bc78c4b9b80c0c2f140e9e094447 Author: Alan Garny '' Date: Mon Apr 20 15:11:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 5c9b7e1cf77de6aa71b15caeb24dce459006d4e3 Author: Alan Garny '' Date: Mon Apr 20 14:55:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c1723425d656804f927b6ed841404efd8ecedc4d Author: Alan Garny '' Date: Mon Apr 20 14:37:35 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 819485d839a4f14c55edc000225b5d13910ad2a8 Author: Alan Garny '' Date: Mon Apr 20 14:31:26 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit f5ab58665760625863e6d79f2989e438c7274549 Author: Alan Garny '' Date: Mon Apr 20 14:21:15 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8481fd46392a347b8b4810f8602da72882703070 Author: Alan Garny '' Date: Mon Apr 20 14:10:33 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4b1380da677be25976459bfac233cbf3d0024128 Author: Alan Garny '' Date: Mon Apr 20 13:58:55 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit d8c470a8c4351af982226d118008db2b69008400 Author: Alan Garny '' Date: Mon Apr 20 13:23:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6e308bdaf941da39ef68fe88bd98dced2d7c5097 Author: Alan Garny '' Date: Mon Apr 20 13:16:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7d116cca94e266a3263a8ebd154b977a5bb23291 Author: Alan Garny '' Date: Mon Apr 20 13:10:16 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit e0181d4cd617eb42a8aa38a4d153fdb80fd1cfc4 Author: Alan Garny '' Date: Mon Apr 20 11:59:27 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit b0879171f41980125f1e7dda330c67a7d206e7ec Author: Alan Garny '' Date: Mon Apr 20 11:31:43 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit aa07bc1aca42b1f3c6c00a67bfff9cadfcf01c49 Author: Alan Garny '' Date: Mon Apr 20 11:01:21 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4281c14a78d8eb01dbb73a6c188be718d5058be0 Author: Alan Garny '' Date: Mon Apr 20 10:38:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit a5eb1728dd4e25128ebbf911f2faf65fa5b65598 Author: Alan Garny '' Date: Mon Apr 20 10:27:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 101bba37cc8f7c59c36f6854a01b9656dd06aee3 Author: Alan Garny '' Date: Mon Apr 20 00:48:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit f546e1c08235a332b04a2643cc09ff4c9e375517 Author: Alan Garny '' Date: Mon Apr 20 00:45:35 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 047494ca9bdf1fc981a8e652ba833460879d7c81 Author: Alan Garny '' Date: Mon Apr 20 00:30:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 36d6bf330d897e47c8e6e506f8fe9938a7f8985f Author: Alan Garny '' Date: Sun Apr 19 21:11:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 87f80ac1cb2fc70cb081444751490de887bb56fc Author: Alan Garny '' Date: Sun Apr 19 20:19:42 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 07d7b905865cf0b53e6a41ca723883ab0e616897 Author: Alan Garny '' Date: Sun Apr 19 20:16:44 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 0efee808a693a4267d107f51e5a75a7bd25cfd8d Author: Alan Garny '' Date: Sun Apr 19 19:58:39 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6091f2e664740ed6d21bde9c5b3cd1b2a14e3c11 Author: Alan Garny '' Date: Sun Apr 19 16:33:06 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit f38fbbbd727bf06bbeca2cf305382f676f13b8df Author: Alan Garny '' Date: Sun Apr 19 14:01:59 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c7f3ad4a73c17fe0e475e2a6daee790e48bc83b1 Author: Alan Garny '' Date: Sun Apr 19 13:43:15 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 98591e194122bc8701860c34aa6dc69001fc4b9d Author: Alan Garny '' Date: Sun Apr 19 11:38:07 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 54326616af2dcf8877948751cd392a9f25f12a43 Author: Alan Garny '' Date: Sun Apr 19 00:25:05 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit e8fe431ca1caeb5bf71a559c5c54063d18521fd4 Author: Alan Garny '' Date: Sun Apr 19 00:09:22 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 146f30c55a60f881d2523264924bdc47763af315 Author: Alan Garny '' Date: Sat Apr 18 23:52:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 9166cb238fdb993e34578121cf45b25fd58355de Author: Alan Garny '' Date: Sat Apr 18 23:46:43 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit ca736871557054d3aab033587cee9d28b53b4dba Author: Alan Garny '' Date: Sat Apr 18 23:02:45 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 174b44b264283a467c102240f0c401a60696cb4f Author: Alan Garny '' Date: Sat Apr 18 22:59:06 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit a327c3cd5d7164f6b301d9068e1d10a88a09e6e9 Author: Alan Garny '' Date: Sat Apr 18 19:12:44 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 044409d44b56fb4b8ce0ee77f38c86a09d6836e3 Author: Alan Garny '' Date: Sat Apr 18 19:06:22 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit cee438d83007378c0458998255509b5971589966 Author: Alan Garny '' Date: Sat Apr 18 18:55:29 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit e356506317be9c7071664450b6a7e0ad4bd64d58 Author: Alan Garny '' Date: Sat Apr 18 17:34:18 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7709e8e00dc1c4ab132994528754ee3e7d789f78 Author: Alan Garny '' Date: Fri Apr 17 15:57:54 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 813efd01c053ce716d134539ade33abdab89d127 Author: Alan Garny '' Date: Fri Apr 17 14:53:15 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 62b0fee4509593bd775abaadd3077d66a06aa600 Author: Alan Garny '' Date: Fri Apr 17 14:51:48 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit a376b348048fd242bd9ba0b826e2353f8a3381e7 Author: Alan Garny '' Date: Fri Apr 17 13:56:06 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit cba4b4881b28c6f96364282298d08200afe50170 Author: Alan Garny '' Date: Fri Apr 17 13:51:31 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 38f7555695dbb6b039cff9595f1576653a385ed6 Author: Alan Garny '' Date: Fri Apr 17 13:50:12 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 00b8018816e1aad7523862114f68c25f41b2cf53 Author: Alan Garny '' Date: Fri Apr 17 13:48:47 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 3043d178c649d53fe8d13be5a3fd19001a48f7d5 Author: Alan Garny '' Date: Fri Apr 17 13:48:36 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 1e3173221c82fb639f2e03e0a30c8a304cc113be Author: Alan Garny '' Date: Fri Apr 17 13:41:57 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit ee58efe10e42afc7f0a985aca89f0472be0cfec3 Author: Alan Garny '' Date: Fri Apr 17 13:39:31 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit b7f8de2b85b797035526ec55ed92da7d1dc873a9 Author: Alan Garny '' Date: Fri Apr 17 13:37:37 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 4c9fee818391d29e014ec5ccfba49b82d460c23c Author: Alan Garny '' Date: Fri Apr 17 13:35:11 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit cfa68124f447a911ea86654ba71b2e7f37be0434 Author: Alan Garny '' Date: Fri Apr 17 13:28:19 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit a4593d8c705fb72446f71f748ea37c9c146568cd Author: Alan Garny '' Date: Fri Apr 17 13:24:12 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit c0b197edd2692bff28a4747bf80ebd63ef13fe20 Author: Alan Garny '' Date: Fri Apr 17 10:48:25 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit d5fae9eeba74c63a39bdea6358072e03b94e0ea4 Author: Alan Garny '' Date: Fri Apr 17 00:19:08 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit 9f06e1541abf870cc22cd8fc6a6445af0090ea4a Author: Alan Garny '' Date: Thu Apr 16 18:12:17 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 0059aa05b67578f7a20c23e3ced74a5f6049ef38 Author: Alan Garny '' Date: Thu Apr 16 17:42:23 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit b599ce7beb05c639b175bbea0a4d8491c4e4eb1c Author: Alan Garny '' Date: Thu Apr 16 17:26:18 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 324c94502b652eef378e46e0cc81370a659229df Author: Alan Garny '' Date: Thu Apr 16 17:06:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 526b5334ebb5da61fc144779c82b6b35cfc3eb9c Author: Alan Garny '' Date: Thu Apr 16 16:53:47 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit a7b4cf08de9811789e9137d75a3c2d4909a921d9 Author: Alan Garny '' Date: Thu Apr 16 16:43:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 8067fd556f8edce8fc3d678e5661adfb866fa653 Author: Alan Garny '' Date: Thu Apr 16 14:58:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 2724f9779329b3148b8c8689f29730282cb1b86b Author: Alan Garny '' Date: Thu Apr 16 14:08:04 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 86dbc167860cf532accc03449bb2c1ffc3b64cdd Author: Alan Garny '' Date: Thu Apr 16 13:41:08 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6b80d4299aad4ed253d6e1132622a7b73585d7c5 Author: Alan Garny '' Date: Wed Apr 15 18:51:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 689ee74635866519681e0f3dddd2878c126cdda9 Author: Alan Garny '' Date: Wed Apr 15 18:42:10 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit f809f6dcff44262ac53dce1a47dcb43251ce01a2 Author: Alan Garny '' Date: Wed Apr 15 18:33:56 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 3147929b078ab50aeef2e7f6c013d49d99d4d10f Author: Alan Garny '' Date: Wed Apr 15 18:17:04 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 6f1b7cf980dc8bc3864f4f076976b15130d579bc Author: Alan Garny '' Date: Wed Apr 15 17:57:58 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7c41e9eb054c1dd6970e81f21acef4ce8e6fd2cf Author: Alan Garny '' Date: Wed Apr 15 16:49:56 2015 +1200 PMR window: now list published exposures rather than workspaces '(closes' '#597).' commit 66e0482565dd2d2ecfa3f760807f591deee5f2fc Author: Alan Garny '' Date: Wed Apr 15 15:28:53 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 7a8c17417b8c3c688634df2d9d33c9d7c4c59131 Author: Alan Garny '' Date: Wed Apr 15 12:03:24 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit db4a797fb6aaef199473cdb16335faf8da11dfa7 Author: Alan Garny '' Date: Wed Apr 15 11:53:15 2015 +1200 Getting ready for version 0.4 '[ci' 'skip].' commit 7c2f37ffb22a8dfbb030719b080bdfc37ae1c1f3 Author: Alan Garny '' Date: Wed Apr 15 11:14:32 2015 +1200 Documentation: some work on updating it in preparation for version 0.4 '(#594)' '[ci' 'skip].' commit 2cbc81877cc2cc8bf7ba462265ebe5cd5fb173b5 Author: Alan Garny '' Date: Tue Apr 14 19:24:10 2015 +1200 CellML Text view: 'don'\''t' generate '{}' for an empty cmeta:id value '(closes' '#595).' commit fcfc07ac2fb497be7978a7e6df6ba951a08fb6d4 Author: Alan Garny '' Date: Fri Apr 10 00:23:52 2015 +1200 Slight update to the developer documentation '(following' the release of Xcode '6.3)' '[ci' 'skip].' commit 1c612954217060072ec6da65ebd218966cba07e2 Author: Alan Garny '' Date: Tue Apr 7 14:59:42 2015 +1200 New snapshots. commit b4d48f6d933478e1d9d0f0ce917a0e69f9645bd6 Author: Alan Garny '' Date: Tue Apr 7 14:48:50 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit a0edc749a2c8839b9e648933322d98f6ae33b521 Author: Alan Garny '' Date: Tue Apr 7 14:13:28 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit a300289503c7642fe6de89cc37c5e46f149c73cb Author: Alan Garny '' Date: Tue Apr 7 14:08:57 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit c794ac45a6fd6452316ff780807542fa9afef2f8 Author: Alan Garny '' Date: Tue Apr 7 11:46:32 2015 +1200 Main window: improved the way we initialise our status bar '[ci' 'skip].' commit adb962113069807720795be15b4f27ab27484db6 Author: Alan Garny '' Date: Tue Apr 7 10:09:16 2015 +1200 New snapshots. commit 6f1804d1e1bc9e778a67290bc26dd8ebe01582ea Author: Alan Garny '' Date: Mon Apr 6 16:39:14 2015 +1200 CellML Text view: now allow comments within an equation '(closes' '#582).' commit e288037f2d5ef9dec18b4312ef2993b138ee2845 Author: Alan Garny '' Date: Mon Apr 6 16:02:01 2015 +1200 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit bd7a55e3f2c35cbcbe3f048b1c99b2ad7892d691 Author: Alan Garny '' Date: Mon Apr 6 14:10:58 2015 +1200 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit 457528f77b5cd7ea803816ac71973a50dd1c7f37 Author: Alan Garny '' Date: Mon Apr 6 14:07:29 2015 +1200 CellML Text view: add forgotten to add some tests for the remainder function '(#573)' '[ci' 'skip].' commit 7107634cb7ca4f800d3fbdcef01e40e78f1253a4 Author: Alan Garny '' Date: Mon Apr 6 12:53:07 2015 +1200 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit 8176b85c82e03e5063e5debcdccc740563452177 Author: Alan Garny '' Date: Mon Apr 6 12:18:44 2015 +1200 Some minor cleaning up '[ci' 'skip].' commit af7380833ade1f988da5716bb8822b895bb85eca Author: Alan Garny '' Date: Mon Apr 6 09:10:42 2015 +1200 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit 82482c9ff634438c2494d34a76e4a83a1687fa43 Author: Alan Garny '' Date: Sat Apr 4 23:07:37 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit fdc51a4a52467330c57a9f911fadf991510fb1d9 Author: Alan Garny '' Date: Sat Apr 4 17:09:22 2015 +1300 CellML Text view: some minor improvement to our tests. commit 3446c3c7853bf8f99c810b219e3cbd95c747e75c Author: Alan Garny '' Date: Sat Apr 4 16:32:16 2015 +1300 Slight update to the user documentation '[ci' 'skip].' commit e4018a835f8d03906c8b76940e54cd9cc5effc28 Author: Alan Garny '' Date: Sat Apr 4 16:31:52 2015 +1300 CellML Text view: some minor improvement to our tests. commit e7712ce6bf4bc1364e3c211bb5fa04819cdb4398 Author: Alan Garny '' Date: Sat Apr 4 15:19:59 2015 +1300 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit 7abe5089952d8921491701b6e0a81046f0135eff Author: Alan Garny '' Date: Fri Apr 3 10:53:32 2015 +1300 CellML Text view: slight improvements to our converter '[ci' 'skip].' commit 1cb6edc9e8b4a70b3b14e909f2a11bc1ba32361c Author: Alan Garny '' Date: Thu Apr 2 18:46:55 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 3c6fe00589ab5c85902e1db3778534fb07e92769 Author: Alan Garny '' Date: Thu Apr 2 18:44:33 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling multiline comments within a parameter block '(closes' '#588).' commit 765a0360747d67b65bfc74261f4a4f45473a4d28 Author: Alan Garny '' Date: Thu Apr 2 17:13:12 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling strings within a parameter block '(closes' '#587).' commit 3cbe8f852883c9eca8968e110d392b25dcc8123a Author: Alan Garny '' Date: Thu Apr 2 17:05:01 2015 +1300 CellML Text view: fixed an issue with the lexer not properly styling single line comments withing a parameter block '(closes' '#585).' commit 86e59fa90d940cad0f2c1804d4bab332dccb4963 Author: Alan Garny '' Date: Thu Apr 2 16:39:32 2015 +1300 CellML Text view: fixed an issue with the lexer crashing OpenCOR if the beginning of a parameter block is immediately followed by a multiline comment '(closes' '#584).' commit 5e9412221cf2dbcb465aaf5b667fc66be5582b1e Author: Alan Garny '' Date: Thu Apr 2 13:41:42 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 7d28e08759674775b66abb920759270b9b50618a Author: Alan Garny '' Date: Thu Apr 2 12:42:31 2015 +1300 LLVM 3.6: can once again get more than one CellML file to run on Windows 32-bit '(closes' '#583).' commit 7e0d6b9e3c41a09e2e27fb436a6e02a50d17e360 Author: Alan Garny '' Date: Thu Apr 2 12:30:23 2015 +1300 CellML Text view: some work on allowing comments within an equation '(#582)' '[ci' 'skip].' commit 19b5a217d6f9f9d81254a8c87485f285808b13df Author: Alan Garny '' Date: Thu Apr 2 10:54:50 2015 +1300 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit '(#583)' '[ci' 'skip].' commit 3d080694e6e646d890d58dcf28ccddefcc68a036 Author: Alan Garny '' Date: Thu Apr 2 10:53:29 2015 +1300 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit '(#583)' '[ci' 'skip].' commit 3de88fe54be64de1e6f2006c2250011f0c0f9644 Merge: a3e54528c c1295369f Author: Alan Garny '' Date: Wed Apr 1 23:24:00 2015 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit a3e54528cdfc87270fafb79d89ef1be07011332f Author: Alan Garny '' Date: Wed Apr 1 23:22:46 2015 +0200 LLVM 3.6: some work towards getting more than one CellML file to run on Windows 32-bit '(#583)' '[ci' 'skip].' commit c1295369f1aeee2031b6db5d1f404211fe67461e Author: Alan Garny '' Date: Wed Apr 1 18:39:24 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 9a9668a95246ec4862bdc734786a1ef208b31333 Author: Alan Garny '' Date: Wed Apr 1 18:09:25 2015 +1300 Slight update to our downloads page '[ci' 'skip].' commit cac9400748bc7ba69d44df9a4af2ded18c9f0e82 Author: Alan Garny '' Date: Wed Apr 1 16:23:09 2015 +1300 Some minor improvements to the developer documentation '[ci' 'skip].' commit f3fce2d2e8a963f27f8e085c579775e605e6faaa Author: Alan Garny '' Date: Wed Apr 1 14:10:38 2015 +1300 New snapshots. commit a1f4d72e659110dea2c93038098a0555d25329c6 Author: Alan Garny '' Date: Wed Apr 1 14:03:41 2015 +1300 CellML Text view: can now render mathematical equations '(closes' '#559).' commit e874240bd07fdf66df70579cfe9c73a62127eebe Author: Alan Garny '' Date: Wed Apr 1 13:53:22 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 0b253753a04199f65e4653350fa4f7a193a657f9 Author: Alan Garny '' Date: Wed Apr 1 13:51:53 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 2ba8a7a88728ca334ce5fd19349a004137b9cfa1 Author: Alan Garny '' Date: Wed Apr 1 11:41:18 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit df38feee77af19cf21810d325494c00d82c4e071 Author: Alan Garny '' Date: Wed Apr 1 11:21:02 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 81b44be4486829b1fa39cacd68311066a98959ea Author: Alan Garny '' Date: Wed Apr 1 11:15:17 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 7273a58882ba9fe62c8999a462c4651da46de955 Author: Alan Garny '' Date: Tue Mar 31 14:50:53 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 88ca963eace2399c56a9db1427979f33b7cbbfe5 Author: Alan Garny '' Date: Tue Mar 31 14:39:54 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 87c3df454fef2fefb78cce0e607fd3aace4c0b9b Author: Alan Garny '' Date: Tue Mar 31 11:41:04 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 50c69f037d73e94fe71e65db0e3e073f6ff16604 Author: Alan Garny '' Date: Tue Mar 31 10:52:19 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 9c14ca9b2718070a10aebe4ec9e79b4ff1742087 Author: Alan Garny '' Date: Tue Mar 31 10:20:48 2015 +1300 Minor updates to the developer documentation '[ci' 'skip].' commit b5c384876824dcdaccc08cdebde7cec1bc61933c Author: Alan Garny '' Date: Tue Mar 31 09:25:31 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 39767f36aa1cc16a44f0b769930407115a060229 Author: Alan Garny '' Date: Mon Mar 30 18:14:40 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 1f5af92f626ac3c6974172d8812aa49b18c78a83 Author: Alan Garny '' Date: Mon Mar 30 15:03:40 2015 +1300 Declare our regular expressions as static const '[ci' 'skip].' This is because building a regular expression engine can be $'\342\200\230time' $'consuming\342\200\231,' so no need to waste time doing it every single time '(should' a regular expression be used many 'times).' commit d23ffe51f9ee7485c891b8f65a04eecc710a92b6 Author: Alan Garny '' Date: Mon Mar 30 13:44:58 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 34384fdc2072b142b149294f28da90be8225c424 Author: Alan Garny '' Date: Mon Mar 30 11:52:23 2015 +1300 CellML Text view: slight improvements to the converter '[ci' 'skip].' commit db2a12044a9cf9f863a577a7aae5b7b4256a1270 Author: Alan Garny '' Date: Mon Mar 30 10:19:15 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 6fecebb86cd9807887ac1b74b4fe905525358a4d Author: Alan Garny '' Date: Mon Mar 30 09:26:32 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit b15b9d6265372b789a7d54fafe276299166beece Author: Alan Garny '' Date: Sat Mar 28 08:12:15 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit eb7d3b5b78d8ab89f70a06c773a3cc6782e0cd30 Author: Alan Garny '' Date: Sat Mar 28 07:47:42 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 27c48cd730ea56c696db1f95757a74a4203c4414 Author: Alan Garny '' Date: Fri Mar 27 19:23:54 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 4d5b21a677b77d8f561797dded48909f1778766d Author: Alan Garny '' Date: Fri Mar 27 17:54:55 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 04a68f0b3cdd92d4d0742b3c97b874122dfdad09 Author: Alan Garny '' Date: Fri Mar 27 17:14:50 2015 +1300 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 30e4b330de08ed8bcb4b00fa6897fd9d4e4877b8 Author: Alan Garny '' Date: Fri Mar 27 17:14:37 2015 +1300 Some minor cleaning up '[ci' 'skip].' commit 2d99586c526d1a0939f3050982a2dcc088896d16 Author: Alan Garny '' Date: Fri Mar 27 14:01:57 2015 +1300 Minor update to the developer documentation '[ci' 'skip].' commit 7a29d0b0da3d6180588cc48dcadad9b42991826a Author: Alan Garny '' Date: Fri Mar 27 13:21:48 2015 +1300 Single Cell view: fixed an issue with simulation properties not always being tracked properly '(closes' '#579).' commit 5cd25609b1dfeb94943c98433eebbf760ab695f6 Author: Alan Garny '' Date: Fri Mar 27 00:05:05 2015 +0100 Data stores: made them dynamically available to the user '(closes' '#451).' Addressed a Windows build issue. Also some minor cleaning up. commit b53186b275776c466853666ffe33e36461ec0ae9 Author: Alan Garny '' Date: Fri Mar 27 11:03:54 2015 +1300 Data stores: made them dynamically available to the user '(closes' '#451).' commit f4ff50c75a8ed8e590453e87a66b2a1651b92c96 Author: Alan Garny '' Date: Thu Mar 26 21:04:28 2015 +1300 Data stores: make them dynamically available to the user '(#451)' '[ci' 'skip].' commit f52e3d3e6b5b54ee7806aec24e0e824db935047c Author: Alan Garny '' Date: Thu Mar 26 18:51:39 2015 +1300 Data stores: make them dynamically available to the user '(#451)' '[ci' 'skip].' commit 255556ab55865295f3b0ab8ff26d3b5b616168f7 Author: Alan Garny '' Date: Thu Mar 26 18:15:09 2015 +1300 Data stores: make them dynamically available to the user '(#451)' '[ci' 'skip].' commit e64bd46e08ad3a197e472adff3572981c016d007 Author: Alan Garny '' Date: Tue Mar 24 06:40:56 2015 +0400 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 41582ab83760b0eaaaaa68c9f8b7b1d4e4c99b87 Author: Alan Garny '' Date: Tue Mar 24 05:24:24 2015 +0400 CellML Text view: some work towards rendering mathematical equations '(#559)' '[ci' 'skip].' commit 4a55d9162b68ca855a51fa442bb53a521c26f181 Author: Alan Garny '' Date: Tue Mar 24 05:06:16 2015 +0400 Some minor cleaning up '[ci' 'skip].' commit b1dee4b6ad5c87008d1b74509039bad1a9d41aed Author: Alan Garny '' Date: Tue Mar 24 04:07:15 2015 +0400 Some minor cleaning up '[ci' 'skip].' commit af966d47d9788b9aeda1961d25ca79be32af223a Author: Alan Garny '' Date: Fri Mar 20 18:53:18 2015 +0100 CellML Text view: allow for equations to have a cmeta:id '(closes' '#574).' commit a79cf48e4069901796335a1210712426e7661ee3 Author: Alan Garny '' Date: Fri Mar 20 18:46:11 2015 +0100 Developer documentation: some minor cleaning up of the CellML 1.1 files '[ci' 'skip].' commit 3e33e4f0a93098e4fbbee8fcdc551f7bf340ddb7 Author: Alan Garny '' Date: Fri Mar 20 18:09:53 2015 +0100 CellML Text view: added support for the remainder function '(closes' '#573).' commit faa15d622881c8254f44555bfc0ebb05555b8a7b Author: Alan Garny '' Date: Fri Mar 20 18:06:51 2015 +0100 CellML Text view: properly parse a two-argument function '[ci' 'skip].' commit 8895f5440245ac70ad50e6f3d6f5bd920a14a7e1 Author: Alan Garny '' Date: Fri Mar 20 17:28:09 2015 +0100 Some minor update to the developer documentation '[ci' 'skip].' commit 16f84d874ccc4a68eea549eb7209eac348201b82 Author: Alan Garny '' Date: Fri Mar 20 17:24:44 2015 +0100 File handling: fixed an issue with the current view getting wrongly updated when modifying another file outside of OpenCOR '(closes' '#577).' commit 989b15a983f8f96457cf28a3d8042de4fac66b2a Author: Alan Garny '' Date: Fri Mar 20 17:23:34 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit dce3099d3b4458adea0a0e4a8d095e48a582a209 Author: Alan Garny '' Date: Fri Mar 20 17:10:34 2015 +0100 Equation renderer: render the remainder function as 'rem(a,' 'b)' rather than a mod b '(closes' '#578).' commit 66fb1981e768919f512ed8b6a3d6cb22122fae82 Author: Alan Garny '' Date: Fri Mar 20 16:41:11 2015 +0100 File handling: fixed an issue with the current view getting wrongly updated when modifying another file outside of OpenCOR '(closes' '#577).' commit 9257752181e5960631f2eb8d1e09ce3e6602fb91 Author: Alan Garny '' Date: Fri Mar 20 16:11:39 2015 +0100 Core plugin: properly retrieve the view plugin associated with a given file '[ci' 'file].' commit 46bee873fc45b12c4e2ad0f35b4a048c5ff79615 Author: Alan Garny '' Date: Sat Mar 14 20:02:01 2015 +0100 CellML support: make sure that updating a runtime works fine for an invalid DAE model '[ci' 'skip].' commit 1dd5ba849102843d66c6993b8429b2c7c4db1d9c Author: Alan Garny '' Date: Sat Mar 14 20:00:17 2015 +0100 Some minor cleaning up of the models in our developer documentation '[ci' 'skip].' commit 7679354e02c6b5f6f2b8f18733be439450a2c5ca Author: Alan Garny '' Date: Sat Mar 14 19:57:12 2015 +0100 Some minor cleaning up of the models in our developer documentation '[ci' 'skip].' commit f5db444fe0859e367202b3c1bd35ba04b18d890b Author: Alan Garny '' Date: Sat Mar 14 19:39:30 2015 +0100 Some minor cleaning up of the models in our developer documentation '[ci' 'skip].' commit af8fa0371673abb0f91fde3ec665a0b0956c837d Author: Alan Garny '' Date: Fri Mar 13 19:08:33 2015 +0100 CellML editing views: keep track of the $'cursor\342\200\231s' position when reformatting the contents of the editor '(#154' '&' '#560)' '[ci' 'skip].' commit 14af5a7cb69b3779454fc55d5f6ad85c5273985e Author: Alan Garny '' Date: Fri Mar 13 19:04:26 2015 +0100 Oops, forgot to update our 'tests!' commit 557ae587547571802d81a05dc27d5c6eef5c0a0a Author: Alan Garny '' Date: Fri Mar 13 18:07:08 2015 +0100 CellML Text view: can now reformat the contents of the editor '(closes' '#560).' commit e82f0632d7d8b758276425e171857523e6697612 Author: Alan Garny '' Date: Fri Mar 13 17:51:29 2015 +0100 CellML Text view: can now reformat the contents of the editor '(#560)' '[ci' 'skip].' commit 91fe9c7576f452bb9748d571dd653a6fdfa89646 Author: Alan Garny '' Date: Fri Mar 13 17:40:43 2015 +0100 Slight update to the user documentation '[ci' 'skip].' commit d74579ba232280375cb248ec2247acca55603e9e Author: Alan Garny '' Date: Fri Mar 13 17:37:44 2015 +0100 Raw CellML view: ensure that warnings are always displayed, i.e. not only when there are also errors '[ci' 'skip].' commit d58493bb15f38cc752e411baf69a532b642c0a4f Author: Alan Garny '' Date: Fri Mar 13 17:31:04 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 1ce3731da6ef0110b2aa027e4460fa666404ac60 Author: Alan Garny '' Date: Fri Mar 13 17:28:14 2015 +0100 Raw CellML view: can now reformat the contents of the editor '(closes' '#154)' '[ci' 'skip].' commit 47da6d05f919d3301bb9318e6cc5624e96478da1 Author: Alan Garny '' Date: Fri Mar 13 16:37:51 2015 +0100 Raw CellML view: can now reformat the contents of the editor '(closes' '#154).' commit 3ca96d3ff190e74e554636678eb86b13ef9b62ed Author: Alan Garny '' Date: Fri Mar 13 15:15:31 2015 +0100 CellML editing views: some work on allowing the reformatting of the contents of the editor '(#154' '&' '#160)' '[ci' 'skip].' commit 062f386ec80f3e8f5d93b8d67d18237bb30c96d4 Author: Alan Garny '' Date: Fri Mar 13 15:12:57 2015 +0100 Main GUI: make sure that the language menu item is always first in the tools menu '[ci' 'skip].' commit 9ef0cbd0cce8d62bdb7386835a5d73d20162bed0 Author: Alan Garny '' Date: Fri Mar 13 13:54:39 2015 +0100 Slight update to the developer documentation. commit be13eb1275d5f7ec09e8598a9983c4aa06bb19ae Author: Alan Garny '' Date: Fri Mar 13 11:29:38 2015 +0100 QScintilla support: now auto-indent '[ci' 'skip].' commit 304bf896db5f935bb5980f3ef277427b43c6667b Author: Alan Garny '' Date: Fri Mar 13 09:02:22 2015 +0100 Travis CI: now use CMake 3.2.1 on Linux. commit c97280e532f3ff1abdbd326bcd4ac1f541cd574d Author: Alan Garny '' Date: Thu Mar 12 11:56:57 2015 +0100 CellML Text view: some work on providing CellML validation for the CellML text format '(#532).' commit b30d80c6b3f5d52992327bddf5012e20a6751d67 Author: Alan Garny '' Date: Thu Mar 12 10:29:00 2015 +0100 GUI: use Ctrl+T for checking the '(CellML)' validity of a file '[ci' 'skip].' commit 23c73b2ec6f398a749057bd34de0d57504605ab7 Author: Alan Garny '' Date: Thu Mar 12 09:41:08 2015 +0100 GUI: some minor cleaning up '[ci' 'skip].' commit db2472b4bc217c53f817b1613fdfefa5c6db4a89 Author: Alan Garny '' Date: Wed Mar 11 15:07:06 2015 +0100 Tests: removed our QCOMPARELIST macro. It proved to be very slow for some tests '(parsing/conversion' of/from the CellML Text 'format).' It could have been improved, but in the end the default comparison of QStringList objects seems sufficient when lists $'don\342\200\231t' have the same contents '(despite' what I seemed to 'remember;' could that have been improved in Qt '5.4.1?).' commit 00ea17361f7aa39583975248d089dc768b0ffeee Merge: 1727587d9 8387a46e7 Author: Alan Garny '' Date: Wed Mar 11 13:23:53 2015 +0100 Merge pull request '#572' from opencor/llvm3.6 LLVM: upgraded to version 3.6 '(closes' '#558).' commit 8387a46e797467fbf116b92786ee6bfb5efb98c9 Author: Alan Garny '' Date: Wed Mar 11 13:02:02 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 15762f3e430a4fa96b3356ac75e4d8c0e9c270fc Author: Alan Garny '' Date: Wed Mar 11 12:50:48 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 4430339cd32ddaba454acca1ef4aef171b28bb99 Author: Alan Garny '' Date: Wed Mar 11 09:35:52 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit ac4817715c85be19f1e60cfaecd18ae4dfa02a45 Author: Alan Garny '' Date: Tue Mar 10 23:48:22 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 50a8428e4d40687a541920546ce9690caab84066 Author: Alan Garny '' Date: Tue Mar 10 19:37:26 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 1878ebcfd713b1e9fe7e3203fc7aa2c44b3e8844 Author: Alan Garny '' Date: Tue Mar 10 19:04:27 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 2eda18ceedb8554133c239c71a563b36790124f4 Author: Alan Garny '' Date: Tue Mar 10 18:33:09 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 4992a681804cacc91205eee31650fcb792e1aca0 Author: Alan Garny '' Date: Tue Mar 10 15:57:48 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit f8afecb1089d123f66bdce4d2ca5101b5c412dc2 Author: Alan Garny '' Date: Tue Mar 10 14:26:11 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 1727587d9418781b558f00d0ecda2c0961def1a2 Author: Alan Garny '' Date: Tue Mar 10 13:38:33 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' Follows the release of Xcode 6.2. commit 2552e580b14163a12d3a0e72e5516b213ae719ef Author: Alan Garny '' Date: Tue Mar 10 13:35:40 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit c1c710a4b1f82b1eb16ede1117e6c908f3fa24a4 Author: Alan Garny '' Date: Tue Mar 10 10:22:13 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit c4a7eb072713f2649fa51ae506340fd3634b3b70 Author: Alan Garny '' Date: Mon Mar 9 17:25:05 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 86cec2f18a83d3ae7234996df27785a1151e0203 Author: Alan Garny '' Date: Mon Mar 9 13:52:25 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 9a37f3a73f7f07d871755bdd7c54ddeb80d7a018 Author: Alan Garny '' Date: Sun Mar 8 09:25:17 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 89e827bceaa6e5d6bbdc52f50c917bab12d69830 Author: Alan Garny '' Date: Sun Mar 8 09:19:06 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 974902dc9326cde524baf5448c8f0d90b6f0e546 Author: Alan Garny '' Date: Sat Mar 7 20:08:28 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 11f3f70da78910094bb39fad774f99bccbe78f59 Author: Alan Garny '' Date: Sat Mar 7 19:54:00 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit a86cdc51d369bcd316327d38016cbc3b6643c732 Author: Alan Garny '' Date: Sat Mar 7 14:18:50 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 1470e586b2213fa359c5fa7fc1bc182ab16b2d48 Author: Alan Garny '' Date: Sat Mar 7 14:08:57 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 8817cc2ef6a44af44b22a2f7db1ed84445c19dcc Author: Alan Garny '' Date: Fri Mar 6 18:04:00 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' Not sure why those two files $'didn\342\200\231t' get committed in the previous 'commit…?!' commit a0439340987d029e50114558fad07d4366e940c7 Author: Alan Garny '' Date: Fri Mar 6 18:02:53 2015 +0100 LLVM: some work on upgrading to version 3.6 '(#558).' commit 77d77397e63f5c4e43f38c9290fe5e93277f31a1 Author: Alan Garny '' Date: Fri Mar 6 15:34:48 2015 +0100 Single Cell view: fixed an issue with the rate of a state variable '(initialised' using another 'variable)' being categorised as a constant '(closes' '#566).' commit 9acaf177bb6268b23b5f3b4d0c5414cdb2b940fe Author: Alan Garny '' Date: Fri Mar 6 14:32:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 933831a738cd62b61868359e1c754902d2d89cd6 Author: Alan Garny '' Date: Fri Mar 6 14:26:37 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 4c31983ef27142c36c675c7e28827394efdcf7f9 Author: Alan Garny '' Date: Fri Mar 6 14:05:48 2015 +0100 Some minor cleaning up. commit 67b723910913eebf4c130806427290819baad9a9 Author: Alan Garny '' Date: Fri Mar 6 11:52:10 2015 +0100 CellML Text view: allow a variable to be initialised using the value of another variable '(closes' '#565).' commit 072cfd1187a257e9c4dda344497f2c9062693d3f Author: Alan Garny '' Date: Fri Mar 6 11:50:59 2015 +0100 Had forgotten a translation '[ci' 'skip].' commit 4b31d76fb1b0549ad91d8e4b6a23a030dbd3ae5b Author: Alan Garny '' Date: Fri Mar 6 09:18:49 2015 +0100 Documentation: problem of casing in a file name '[ci' 'skip].' commit 722f0c2a11b4d5130c12b02e61a4fba7aab4911f Author: Alan Garny '' Date: Thu Mar 5 18:42:43 2015 +0100 New snapshots '[ci' 'skip].' commit 3a7b1f0bccefcad78a2be1dee32f37427004152b Author: Alan Garny '' Date: Thu Mar 5 18:38:06 2015 +0100 CellML Text view: fixed a problem with new CellML files always being empty '(closes' '#563).' commit f6bb83f7c190a600848b7db08be69b8adadd43e3 Author: Alan Garny '' Date: Thu Mar 5 18:26:11 2015 +0100 Editing views: fixed a problem with creating a new file crashing OpenCOR '(closes' '#562).' commit f666ca84d18faf88958e6e8e0d9dc435029fe48c Author: Alan Garny '' Date: Thu Mar 5 17:57:43 2015 +0100 Fixed an issue with the new file menus only being available if there is already a file opened '(closes' '#561).' commit e72f5a12de6afa852c66336edc44cc02bdd25f69 Author: Alan Garny '' Date: Thu Mar 5 16:16:41 2015 +0100 New snapshots. commit 1e3dcb0f940951a854b53b3fe69caa3bcf452e18 Author: Alan Garny '' Date: Thu Mar 5 15:56:07 2015 +0100 Added a CellML Text view '(closes' '#17).' There are still things that could be done to make it better '(e.g.' see issue '#532),' but it can now be used to edit CellML files. commit 32b5020ac7a1da5183eb7828d4aea042b2a5b9b1 Author: Alan Garny '' Date: Thu Mar 5 15:47:57 2015 +0100 CellML Text view: wrote a parser for the CellML text format '(closes' '#531).' commit fb0f341ec123e6903e949e3f17cb444b0fda71a9 Author: Alan Garny '' Date: Thu Mar 5 15:14:56 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 02cea2a316e634d6d3a55df4add5e6419540251d Author: Alan Garny '' Date: Thu Mar 5 14:02:08 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 36c7fb5a7ccf4232265a38450613c60f94749362 Author: Alan Garny '' Date: Thu Mar 5 13:07:43 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 239a0bd3f97d22ac0c314221b4050615bf7f6137 Author: Alan Garny '' Date: Thu Mar 5 11:01:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 43c21d5c430625bc10061ddf2b6f89e7ee6278ad Author: Alan Garny '' Date: Thu Mar 5 10:23:35 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit cb9bc7c2ceb1796697b691ffd533f6fa684573a1 Author: Alan Garny '' Date: Thu Mar 5 09:49:29 2015 +0100 CellML Text view: some minor cleaning up '(#17)' '[ci' 'skip].' commit d03ebb95f0972791c6df02e123c4e6d50e7432b0 Author: Alan Garny '' Date: Thu Mar 5 09:38:44 2015 +0100 XML support: slight improvement to our serialisation of XML documents '[ci' 'skip].' We remove duplicated namespaces information. commit ac7581c96ba4ed4bdff604cc2d629dce9828d066 Author: Alan Garny '' Date: Wed Mar 4 17:41:48 2015 +0100 CellML Text view: some minor cleaning up '(#17)' '[ci' 'skip].' commit 18b5f1df75fd68e72efc91e806e91b2fda7ca7db Author: Alan Garny '' Date: Wed Mar 4 17:41:26 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit d7169424d066675dc58bb6b5394f18c255cfca0a Author: Alan Garny '' Date: Wed Mar 4 17:04:50 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 2896db21ae45d3cad6519b1e2366b018c482728f Author: Alan Garny '' Date: Wed Mar 4 17:00:34 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit b6a99a7d2e02a9d43c1d51f15825c2b922bf2bfd Author: Alan Garny '' Date: Wed Mar 4 16:52:47 2015 +0100 CellML Text view: some minor cleaning up '(#17).' Slight improvement to the conversion of CellML files '(regarding' unary '“+”).' commit 8fecd63f4b1cf5964993298fbb9c5b2a19593cba Author: Alan Garny '' Date: Wed Mar 4 16:38:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 3a43ed3ff892d012d116fd7e839f1ec38ca368a1 Author: Alan Garny '' Date: Wed Mar 4 16:07:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 5c2f72084640c90b1a82ebbdc2a00873b67e58cb Author: Alan Garny '' Date: Wed Mar 4 15:57:42 2015 +0100 'Oops!' '[ci' 'skip]' commit 505f954f3bc97bbbe312aa3c33a1c2652e765433 Author: Alan Garny '' Date: Wed Mar 4 15:56:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 49f786b225e3c8375b85f655c48c190537a2694b Author: Alan Garny '' Date: Wed Mar 4 15:10:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 7188429dd5caee93a816f719e5dec1e0c76ab4cb Author: Alan Garny '' Date: Wed Mar 4 11:23:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit e7a6a9fa74b5b46b9d8501a2e93cfd83f0170500 Author: Alan Garny '' Date: Wed Mar 4 11:19:32 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 45499a3eb830b6ad83cc4a429af9ed4df7f96359 Author: Alan Garny '' Date: Wed Mar 4 11:15:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 8b11f2091226e7075267a1ac67b4c5fa05321778 Author: Alan Garny '' Date: Wed Mar 4 11:03:06 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some cleaning up. commit 70c098cfcc03a1881924827bf577fe013c6e6a93 Author: Alan Garny '' Date: Wed Mar 4 10:55:13 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some cleaning up. commit 53afaf070be47e5a0a420350dc86f668cfe941b7 Author: Alan Garny '' Date: Wed Mar 4 10:46:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 0ecdd96349aa422b7636bf4a45ff49815eaec8fb Author: Alan Garny '' Date: Wed Mar 4 10:36:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 834558e7a9c2458ef1753271b5527edfa3414981 Author: Alan Garny '' Date: Tue Mar 3 18:56:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 2f29ad96b499daa76e701dfd41bc64238838b6a5 Author: Alan Garny '' Date: Tue Mar 3 18:46:52 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit e3d1fd9cebaa5c854c963551db833bb874c1491a Author: Alan Garny '' Date: Tue Mar 3 17:25:45 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 161062e8e44ee04c7c08c764c1db717eb49a022f Author: Alan Garny '' Date: Tue Mar 3 15:56:25 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c9d39124d31522641c652855f5fcd2f793f46213 Author: Alan Garny '' Date: Tue Mar 3 15:49:30 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit ea293d4141e944f074637416f66382eadfa32817 Author: Alan Garny '' Date: Tue Mar 3 15:35:02 2015 +0100 CellML Text view: fixed a small issue with the lexer and Unicode '(#17)' '[ci' 'skip].' commit e14852bfbfdc9a29b006a83343d353823faeb45e Author: Alan Garny '' Date: Tue Mar 3 15:04:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 6cb7720d73225c435778730a99f293267ca8370b Author: Alan Garny '' Date: Tue Mar 3 14:47:28 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 625d7dcc94384b2216508beb50cf67b27919dd6d Author: Alan Garny '' Date: Tue Mar 3 14:33:34 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit ccabc3f56ce0d9444b5b7f43b59bce658798fd49 Author: Alan Garny '' Date: Tue Mar 3 14:13:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 72ce21a449bf05fe075e11ecce5af8e4828c1e51 Author: Alan Garny '' Date: Tue Mar 3 13:55:25 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit c27689865757ecdef24516730b69aa27246b95d4 Author: Alan Garny '' Date: Tue Mar 3 13:48:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 096fcad9c79e4ea4a017d99bf539e5ac8b74d333 Author: Alan Garny '' Date: Tue Mar 3 11:20:07 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 1c64f798f221bd026a832c6ac228ea2839eaab22 Author: Alan Garny '' Date: Tue Mar 3 11:19:47 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 9f829f7edfa3090262cd929866d688f5c7012ac8 Author: Alan Garny '' Date: Tue Mar 3 10:46:34 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 28023f08da0001af9733193eca6faf639ddbf12a Author: Alan Garny '' Date: Tue Mar 3 10:43:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 604348a84ee39782581af36fb194190e14bbd6a2 Author: Alan Garny '' Date: Tue Mar 3 10:16:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 56f7d816bf0386568ce187ad15fc1c7d7464851d Author: Alan Garny '' Date: Mon Mar 2 18:10:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit d9b873f7778607f7e4e8fce1776ad473469b679f Author: Alan Garny '' Date: Mon Mar 2 17:33:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit ff624e2cbf38b57971e811a5a127ee3724bf25ac Author: Alan Garny '' Date: Mon Mar 2 17:28:59 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 1d82da1c94c0347a0c364379a9ad7881a3748b31 Author: Alan Garny '' Date: Sun Mar 1 13:41:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit d1a572a140716eab45e0199bd95184f3152e9bf3 Author: Alan Garny '' Date: Sun Mar 1 10:33:38 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 4abed792617672a2bc36d82504f602f8dc6ce047 Author: Alan Garny '' Date: Fri Feb 27 21:02:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 9f7f96b32bc4fc5062c87f6a625c9532021fa5f3 Author: Alan Garny '' Date: Fri Feb 27 17:19:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit eb3cf2640d97086b6ea33533872c1ed1b96bc94c Author: Alan Garny '' Date: Fri Feb 27 16:55:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 55521488c9e6e9054dbecc7d0e773dbeb1680656 Author: Alan Garny '' Date: Fri Feb 27 16:04:38 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 7da2c8e2257ae3e716fdcfccec933b4176757b28 Author: Alan Garny '' Date: Fri Feb 27 15:50:35 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 230719ea258113707994fa2a4fb7e90e85f74729 Author: Alan Garny '' Date: Fri Feb 27 15:35:04 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit ae45b6a394e385ee70bd11a27b9f41fb7647f435 Author: Alan Garny '' Date: Fri Feb 27 14:43:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 7f83547e04ea34d27ef8146af2659792f963b54c Author: Alan Garny '' Date: Fri Feb 27 14:40:51 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit de4a1ca3f9b9adeaa055e979856964650122d257 Author: Alan Garny '' Date: Fri Feb 27 13:01:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit c377ca9d0c219d45ff13e254e4f7bd9f8cfaa59d Author: Alan Garny '' Date: Fri Feb 27 11:34:46 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 83ae17ad8ac00cef06d6c865e3af7919c70343c0 Author: Alan Garny '' Date: Fri Feb 27 10:35:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit beb65f7577ac509c335ba670c816ed268beb86e6 Author: Alan Garny '' Date: Fri Feb 27 10:08:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 8e693b539fec662161ff6e6f907178098454372a Author: Alan Garny '' Date: Fri Feb 27 09:50:31 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 71d5b300daf753d577b730afed1e0b03980134b1 Author: Alan Garny '' Date: Fri Feb 27 09:49:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 34f827a0de83c713f3deb6a3e4e4ac0b9b071766 Author: Alan Garny '' Date: Fri Feb 27 09:32:09 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 7bea1f8f7c6f0c4b633673c125fe43448d3520c2 Author: Alan Garny '' Date: Fri Feb 27 09:20:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit 459e5c9f242c3ee3e63df7667b5de2f4720cb448 Author: Alan Garny '' Date: Thu Feb 26 17:37:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 46e5bf2857c99bc855e0ec7e604484346690eeaa Author: Alan Garny '' Date: Thu Feb 26 17:14:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' Some minor fixes here and there. commit 8c6228626ca6b3e8ab4fc2a42ecff5926ab807ff Author: Alan Garny '' Date: Thu Feb 26 16:36:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' Done with mappings. commit b21b40b525addd17b3a463277313284cc7f67ae3 Author: Alan Garny '' Date: Thu Feb 26 15:48:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' Some minor cleaning up. commit e281bee78776d349c5632772ad84b39712c4f0dc Author: Alan Garny '' Date: Thu Feb 26 15:28:32 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' Done with imports. commit accad4b1a3e3e10f4719cd7890b622c4d04c6805 Author: Alan Garny '' Date: Thu Feb 26 15:00:27 2015 +0100 CellML Text view: some minor cleaning up '(#17).' commit 47bd559f796681545e2c9af10a6821793d71f8a1 Author: Alan Garny '' Date: Thu Feb 26 14:10:57 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 46f7126956628d9948f7fb4a1096b959045950fa Author: Alan Garny '' Date: Thu Feb 26 14:06:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 39e3d86463d33f7a4ef0b7faeb7ec0984f381507 Author: Alan Garny '' Date: Thu Feb 26 14:01:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 33160e9dc70342c59dc31c47004f51e1b48038c4 Author: Alan Garny '' Date: Thu Feb 26 14:00:28 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit e4b344d1dd285cbcadf1084eef33006da5ac3946 Author: Alan Garny '' Date: Thu Feb 26 11:51:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 5b6e7f46b1a947aa42c6a876f38dffaa7f75cc6b Author: Alan Garny '' Date: Thu Feb 26 11:18:19 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 27875d4f33981f106cf6fc53419c54963a75d924 Author: Alan Garny '' Date: Wed Feb 25 19:18:01 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit e004a18f2ae3017f008950e048c9fce128ac7f0c Author: Alan Garny '' Date: Wed Feb 25 19:12:21 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 7bbe6ddc36244c9c12c0c613278cd2e700590f63 Author: Alan Garny '' Date: Wed Feb 25 18:48:24 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit b8e976d0e840815e38d0fb856b149552ae476bbf Author: Alan Garny '' Date: Wed Feb 25 18:43:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 4eb224d6f370c446c93f29d44760bc8d33f508c8 Author: Alan Garny '' Date: Wed Feb 25 18:36:25 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit a9dfa24ace4c866e459fa88025f58bfb6d26fbc5 Author: Alan Garny '' Date: Wed Feb 25 18:20:53 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 81242b3121741dc6b048e0f6d20122451ae31107 Author: Alan Garny '' Date: Wed Feb 25 16:15:16 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 62ff2216eea5e5f5852cdfbd602ee70c5ad12ec6 Author: Alan Garny '' Date: Wed Feb 25 16:12:41 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit baa7c8b0ccdcdc72df55e0bd1bdad7586984a8e5 Author: Alan Garny '' Date: Wed Feb 25 14:00:13 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit cba8d0b39a91798fc3485b374aea9f6c0d507670 Author: Alan Garny '' Date: Wed Feb 25 13:32:15 2015 +0100 CellML support: added a static method to retrieve a CellML version as a string '[ci' 'skip].' commit ae3ffda0e550cba5d975d70c55cc477aef727133 Author: Alan Garny '' Date: Wed Feb 25 13:31:41 2015 +0100 Edit list widget: added support for messages of type information '[ci' 'skip].' commit 65c04ada28401acaee6cf4c9b5aa66a98a84f7c5 Author: Alan Garny '' Date: Wed Feb 25 11:13:12 2015 +0100 Fixed a small issue with opening a non-CellML file while in a CellML-based view '[ci' 'skip].' commit 9f27153ba6a8679fb48c702778d8670b00eb216c Author: Alan Garny '' Date: Wed Feb 25 10:59:05 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 83c5d89f4d5ca3b7766278112eee89f45bd49af5 Author: Alan Garny '' Date: Wed Feb 25 10:43:30 2015 +0100 CellML Text view: some work '(#17)' '[ci' 'skip].' commit c67c1c2abcd6f257a0bbd2fcb0c14a9f1826c761 Author: Alan Garny '' Date: Wed Feb 25 10:39:25 2015 +0100 CellML support: slight improvement to the code. Added 'CellMLSupport::CellmlFile::version().' commit 1831ea0264de35659e7eb4687ed3bfea1924c217 Author: Alan Garny '' Date: Wed Feb 25 10:17:01 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 57c5fb698b6f572e8ff1a87236682438aef32acc Author: Alan Garny '' Date: Wed Feb 25 09:19:37 2015 +0100 Qt 5.4: OpenSSL: addressed issue of some methods not being resolved '(closes' '#516).' commit 6925663e51fc21dbe5884b7245b2735047266446 Merge: f3cf50cd8 bffb35501 Author: Alan Garny '' Date: Wed Feb 25 09:17:19 2015 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit f3cf50cd80c6786195e797a66356fcfeaacde4af Author: Alan Garny '' Date: Wed Feb 25 09:14:17 2015 +0100 Qt: upgraded to version 5.4.1 '(closes' '#556).' commit bffb355010d0a0767575d7118c266272bdf1c0f1 Author: Alan Garny '' Date: Tue Feb 24 20:33:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a52d3e311e5bc4a5ad679cc944b9af9c02a15be9 Author: Alan Garny '' Date: Tue Feb 24 16:35:34 2015 +0100 Tests: make sure that tests.txt gets created even if there are no tests '[ci' 'skip].' commit b9a8b59fe8f5c40d16e3c42188e9f7eeeff07655 Author: Alan Garny '' Date: Tue Feb 24 15:08:55 2015 +0100 CellML Text view: properly handle new files '(#17)' '[ci' 'skip].' commit 1caf5e1007aa4352fb054ddf5c14452d2c638eff Author: Alan Garny '' Date: Tue Feb 24 15:07:09 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 00d3366a77d5ac46649fdeb30a4cd45c0f50accd Author: Alan Garny '' Date: Tue Feb 24 13:49:32 2015 +0100 CellML Text view: properly handle new files '(#17)' '[ci' 'skip].' commit 6d286df2aca7dac59b911e309cc76479242b82f9 Author: Alan Garny '' Date: Mon Feb 23 20:09:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 167a04e6491a2f4bed9e1798affa1c100922cc02 Author: Alan Garny '' Date: Mon Feb 23 19:42:24 2015 +0100 Continuous integration: remove support for AppVeyor '(closes' '#555)' '[ci' 'skip].' commit c876cf4a3f71f989d07b9c68a79a51a75b83a9e3 Author: Alan Garny '' Date: Mon Feb 23 19:33:06 2015 +0100 Continuous integration: remove support for AppVeyor '(closes' '#555).' commit 1e2144717f6c306eeaec3515a6e3a1fd95bf4896 Author: Alan Garny '' Date: Mon Feb 23 18:16:43 2015 +0100 Some minor cleaning up. commit 74dd2ce60d80210f3c74d26c37541c489af84c8b Author: Alan Garny '' Date: Mon Feb 23 17:35:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 616a1a9477b99be81ae96a1ed552c61c2b35979c Author: Alan Garny '' Date: Mon Feb 23 17:16:48 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 729334aa3bda9db96f1151c26115304ab1c41aea Author: Alan Garny '' Date: Fri Feb 20 21:32:28 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c1979ae666b525275fd58cf54d9c477e7603a145 Author: Alan Garny '' Date: Fri Feb 20 18:00:37 2015 +0100 CellML: now process namespaces whenever needed/possible. commit b8eb83b64588c1c2b24a8747f9bb26cd4e0452b9 Author: Alan Garny '' Date: Fri Feb 20 17:55:44 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 52f7dc8e5080abcc9fd5a3395c78d4e643d2f590 Author: Alan Garny '' Date: Fri Feb 20 10:28:41 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit da6ab93749fca6a71a31864402a639e0918a4b7a Author: Alan Garny '' Date: Fri Feb 20 08:58:54 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c71afb9f2ed6284e3a09bc2e2cafb796f7324345 Author: Alan Garny '' Date: Thu Feb 19 21:05:44 2015 +0100 Some minor cleaning up. commit 10e12c1887031370772ae9954ad400a234928deb Author: Alan Garny '' Date: Thu Feb 19 20:56:03 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit ed1b73c9dcd979268b63581db4bbd83bd255bbb6 Author: Alan Garny '' Date: Thu Feb 19 19:05:17 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit eec239be94f1d450d638d6619e574a596fd88505 Author: Alan Garny '' Date: Thu Feb 19 18:30:54 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit b767099f02acda3300a166cc8a197309b351a988 Author: Alan Garny '' Date: Thu Feb 19 18:15:43 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit d8d666e456d1ad52dbc255080d2abc8d18866174 Author: Alan Garny '' Date: Thu Feb 19 16:54:36 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 36e4636df0f90080bdeb3af4799b4d0a10c6557c Author: Alan Garny '' Date: Thu Feb 19 16:46:55 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 6835274b7252a7bcb509b48051072a342fff15c2 Author: Alan Garny '' Date: Thu Feb 19 16:27:00 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit f5d052cc3fde890d006e5ef1ea2e7ed9327384a2 Author: Alan Garny '' Date: Thu Feb 19 15:46:41 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ab10cdf8f59c8a3fcd2e1bea11f67c305909d141 Author: Alan Garny '' Date: Thu Feb 19 15:45:04 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit e14dad1cd9e5945c0fad172d25ec74ecce1d8ee4 Author: Alan Garny '' Date: Thu Feb 19 15:05:26 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 86e1da47d174fffaa5f029977077a32f026def67 Author: Alan Garny '' Date: Thu Feb 19 14:45:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 5abd0f52a1d7baa3b4c83adcd755d755fa52e6e2 Author: Alan Garny '' Date: Thu Feb 19 14:42:43 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 86fc064812a27fe003b9cded2131b6095a6532a5 Author: Alan Garny '' Date: Thu Feb 19 14:09:47 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a14d4ac51a01b658b667003441f0ebff632f0493 Author: Alan Garny '' Date: Thu Feb 19 10:57:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit dd14fea615ef69e179768b0693a2f9c5a9327b0c Author: Alan Garny '' Date: Thu Feb 19 10:14:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 7ac67bc52303e97b9b5fd79f55ea2061c16e6e1e Author: Alan Garny '' Date: Wed Feb 18 20:33:01 2015 +0100 CellML Text view: added support for unicode characters '(closes' '#554).' commit 2e013e27f081d9c2a9d9f0047be307175a190c23 Author: Alan Garny '' Date: Wed Feb 18 20:12:10 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit 4e164d5e4d9d335321b679a9baea1492dcbf7ce3 Author: Alan Garny '' Date: Wed Feb 18 19:58:43 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit 278280185297572817463a894abea382fb8ecb1c Author: Alan Garny '' Date: Wed Feb 18 19:50:22 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit 82931e02f3198f24cb19b3a1681c2efc6edd5e64 Author: Alan Garny '' Date: Wed Feb 18 19:24:31 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit 394c3cd3b23bea9dc5ed7125ea6b845d01385d6f Author: Alan Garny '' Date: Wed Feb 18 19:17:35 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' Some minor cleaning up. commit 84a040d73e285cf5214a0562a1ba170251ae48a2 Author: Alan Garny '' Date: Wed Feb 18 19:05:58 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' Some minor cleaning up. commit e0c44187d4bf8abeab71abb403dd5e6b5a5f8a28 Author: Alan Garny '' Date: Wed Feb 18 18:40:25 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit eac408b9f5a402def85264db31ca69716cd57aaa Author: Alan Garny '' Date: Wed Feb 18 18:27:00 2015 +0100 CellML Text view: some work on adding support for unicode characters '(#554)' '[ci' 'skip].' commit f911110dfcf7ef8e07357f7a0a7bfcd4b3786bb1 Author: Alan Garny '' Date: Wed Feb 18 18:25:37 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit cfd6ab7772d3e0da047e41b586bf750e38c368b6 Author: Alan Garny '' Date: Wed Feb 18 17:37:56 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c3333ca5960cd8d5c668468245bf224322eb4d13 Author: Alan Garny '' Date: Wed Feb 18 14:38:14 2015 +0100 CellML Text view: improved the syntax highlighting of numbers '(#17)' '[ci' 'skip].' commit 0e61eddf5c6495dd11067980ea2bf74de5943ea5 Author: Alan Garny '' Date: Wed Feb 18 14:29:54 2015 +0100 CellML Text view: improved the syntax highlighting of numbers '(#17)' '[ci' 'skip].' commit 996d3f1a830c7d1d1e43fa4174601ac140b70ae5 Author: Alan Garny '' Date: Wed Feb 18 13:15:26 2015 +0100 Property editor widget: slight improvement to the validation of floating point numbers '[ci' 'skip].' commit 5ab08dc5f18cee9aca74600e7826a4bde46a8619 Author: Alan Garny '' Date: Wed Feb 18 13:14:52 2015 +0100 CellML Text view: improved the highlighting of numbers '(#17)' '[ci' 'skip].' commit cb94ad9fcf8be48fce0a00f8d49fc6ccca03f19a Author: Alan Garny '' Date: Tue Feb 17 18:04:55 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit a1a7d8a71d6f5fcd4837670bde051964be4685cd Author: Alan Garny '' Date: Tue Feb 17 15:41:39 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit ff7cdabbe74f5e4a37836ee37437173bc54e1fd5 Author: Alan Garny '' Date: Tue Feb 17 14:55:54 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 81d7aaa1657ad4e6b628857181c6c782d0f524ba Author: Alan Garny '' Date: Tue Feb 17 14:18:02 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 374e17e0d4b75d2473f180d822ed6f0be0e00cb6 Author: Alan Garny '' Date: Tue Feb 17 13:55:12 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 050ffc79db322146596d74f9e0056b067b1f1321 Author: Alan Garny '' Date: Tue Feb 17 13:37:22 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 86fb86ae9ee71343a69791f901041b278e686554 Author: Alan Garny '' Date: Tue Feb 17 11:22:20 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit ecbee08dd30b1a9a625c3accc57aa59cd7e77312 Author: Alan Garny '' Date: Tue Feb 17 10:58:11 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit a1c006351c1d43162208c2a87a29512e41534e3e Author: Alan Garny '' Date: Tue Feb 17 09:33:29 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit 841abb2af6541bb89c30a25d722520a93cfaba5d Author: Alan Garny '' Date: Mon Feb 16 18:46:01 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531).' commit bec5a51beeec0ca10145798f11e52a6661187f1d Author: Alan Garny '' Date: Mon Feb 16 18:37:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0b5e5a99baa70365883d56b7cd4b2c5a377b1d42 Author: Alan Garny '' Date: Mon Feb 16 17:22:51 2015 +0100 Testing strategy: 'don'\''t' hard code the list of tests in our main test program '(closes' '#553).' commit 65b0fb9a33a1d97385b95743b30d638405b4612f Author: Alan Garny '' Date: Mon Feb 16 16:42:27 2015 +0100 Testing strategy: 'don'\''t' hard code the list of tests in our main test program '(closes' '#553).' commit badcac3104f8d2838798a4ab490d3e34c164fc73 Author: Alan Garny '' Date: Mon Feb 16 15:19:45 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit bd6ecf5b2203f15ed5e1892a8ee981747557228a Author: Alan Garny '' Date: Mon Feb 16 15:17:00 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 22acaf2faae348c7aa04353b5924044601c102cc Author: Alan Garny '' Date: Mon Feb 16 14:52:48 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit 4f904ade6a036cc0ff7e286577e75157b605f39e Author: Alan Garny '' Date: Mon Feb 16 14:52:07 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 5a16433f9af63bbfb3161f10a0856ac401a7bffe Author: Alan Garny '' Date: Mon Feb 16 14:10:44 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 4d2251ae01c85d8fc12179f93207638afc74bf77 Author: Alan Garny '' Date: Mon Feb 16 11:48:14 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit b84d9195656deef7a9ea51d8f0fe03a55b1c7078 Author: Alan Garny '' Date: Mon Feb 16 11:30:14 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit c2147acdb475ba43362a228845e6b0b3a9cf1e31 Author: Alan Garny '' Date: Mon Feb 16 11:21:30 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 861bd5707c83ab216e86e401944f2f91dcce026f Author: Alan Garny '' Date: Sun Feb 15 18:03:59 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 80367c1967d51ac93a19f112936a8bfdf9759d70 Author: Alan Garny '' Date: Sun Feb 15 17:41:20 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7e8a4abace26d53331da896e27a31f16a5cb8be4 Author: Alan Garny '' Date: Sun Feb 15 13:06:58 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 0ad829b41673b61119cc1a89d5300b07bacb88b0 Author: Alan Garny '' Date: Sat Feb 14 14:18:38 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b8d26704b940987cda40aa8e7e91ad253f271391 Author: Alan Garny '' Date: Fri Feb 13 18:07:19 2015 +0100 Fixed a small issue that preventing a file from being reloaded after a view 'couldn'\''t' save it '[ci' 'skip].' commit 7b909a3ba9b06ed16847cef03d98a9049a45af7a Author: Alan Garny '' Date: Fri Feb 13 17:56:23 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 4a60a6a62d39a61afcbf22ec9b9dcb05fdd2ba84 Author: Alan Garny '' Date: Fri Feb 13 17:44:29 2015 +0100 CellML Text view: some minor refactoring '[ci' 'skip].' commit cd0c91b40853f3a7d28fa43000426710d1ec3fa1 Author: Alan Garny '' Date: Fri Feb 13 17:04:33 2015 +0100 Pretty CellML view: replaced '"Pretty' 'CellML"' with '"CellML' 'text"' '(closes' '#548)' '[ci' 'skip].' Had forgotten to rename those two 'files!' commit d7daa0779df5ff4f30435107e48d4e0f2917398d Author: Alan Garny '' Date: Fri Feb 13 14:59:47 2015 +0100 Slight update to the developer documentation '[ci' 'skip].' commit a07b3879d1bbc260bb8af57d0886944669fedfa0 Author: Alan Garny '' Date: Fri Feb 13 14:29:42 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 1f9e4f310306830583cae15eae71681f1ec68b16 Author: Alan Garny '' Date: Fri Feb 13 14:15:06 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 444f60d454a5e16f12af4eea95d649a2addc0104 Author: Alan Garny '' Date: Fri Feb 13 14:02:17 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit f8521d606d479c19d03500022dd14753161c4b23 Author: Alan Garny '' Date: Fri Feb 13 10:34:17 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 590e0dc4853e3115af4ac5a45332a673ba24bc2c Author: Alan Garny '' Date: Thu Feb 12 18:07:13 2015 +0100 Can now quickly reopen the most recently closed file '(closes' '#552).' commit 0519810d7e0579fe38c2c1ed4109ae9ef445feba Author: Alan Garny '' Date: Thu Feb 12 17:04:58 2015 +0100 MathML: slight update to the XSL '[ci' 'skip].' The not element was rendered using a special character that would probably not make sense to most people, so now render it as $'\342\200\234not\342\200\235' '(as' in 'COR).' commit 7622494f3719c3853c3223dfc8727247a9d2f4e5 Author: Alan Garny '' Date: Thu Feb 12 16:54:04 2015 +0100 Some more reverting '[ci' 'skip].' I $'don\342\200\231t' know why, but I kind of assumed that we $'didn\342\200\231t' need to clean a MathML block. Well, 'wrong!' Our MathML viewer indirectly crashes if a MathML block $'isn\342\200\231t' cleaned '(e.g.' when we have a cn element with a cellml:units attribute. If the attribute is left in, then we get a 'crash!' commit c476eaf00a78cb25e6127fb12e37767736608e69 Author: Alan Garny '' Date: Thu Feb 12 16:38:26 2015 +0100 Reverted some changes related to the loading of a CellML file using namespace processing. Indeed, it would seem that if a model element has a cmeta:id and that it listed before the xmlns:cmeta attribute, then the cmeta:id $'won\342\200\231t' be recognised when trying to retrieve it using 'pDomNode.attributes().namedItemNS(CellMLSupport::CmetaIdNamespace,' '"id”).' If we were to put the xmlns:cmeta attribute before the cmeta:id, then $'it\342\200\231s' all fine. However, my understanding is that the order of attributes $'doesn\342\200\231t' matter, yet it seems that it does in this particular case when using QDomDocument '&' Co. commit 72e1ffd8d311ed4091d4ef283808f3f7babc00de Author: Alan Garny '' Date: Thu Feb 12 10:43:49 2015 +0100 AppVeyor: only get email notifications when actually necessary. commit d85f2796eca28c4b343964439147b17d6a1decab Author: Alan Garny '' Date: Thu Feb 12 10:21:25 2015 +0100 Cleaned up some XML-related code '[ci' 'skip].' commit bd42b7ecebcdab4d2c95d841c3cf855148d1fae0 Author: Alan Garny '' Date: Thu Feb 12 09:45:40 2015 +0100 OpenSSL on Windows: now ship the version from http://indy.fulgan.com/SSL/ '(closes' '#551).' commit 25e160a16d3bdebddd450ebe4fd61e325c09d512 Author: Alan Garny '' Date: Wed Feb 11 20:09:57 2015 +0100 Cleaned up some XML-related code '[ci' 'skip].' commit c146e7318ae27b3be9e4367d654d764a5d20de4a Author: Alan Garny '' Date: Wed Feb 11 18:52:17 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 449aab3c899e74f00edbf83ef243da678eb2f127 Author: Alan Garny '' Date: Wed Feb 11 16:09:31 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit 35a1f2f078eaf9779096c4945e6837c6e96353e7 Author: Alan Garny '' Date: Wed Feb 11 14:27:18 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit dc87a76984336b6910c9c5ab00da902ff37ca55e Author: Alan Garny '' Date: Wed Feb 11 14:24:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ee63c7bcdd555341f063a7c855bf6a37ee554a58 Author: Alan Garny '' Date: Wed Feb 11 13:19:05 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit e51c279654166b056fb3f3e8d3bdbc843fc528d1 Author: Alan Garny '' Date: Wed Feb 11 11:13:49 2015 +0100 CellML Text view: some work on writing a parser for the CellML text format '(#531)' '[ci' 'skip].' commit eb57c88bc9b30a6320e001059137445c49bb52b4 Author: Alan Garny '' Date: Wed Feb 11 11:12:58 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6b77528a0c620ea2e763ad4482d68fca1d4c8adb Author: Alan Garny '' Date: Wed Feb 11 09:27:11 2015 +0100 AppVeyor: use the default platform and configuration. Indeed, to build/test so long on AppVeyor '(slow' queuing system and all the jobs are run sequentially rather than in parallel as in Travis 'CI)' that it makes the whole CI a bit pointless. commit f15fed81d5239dd90c8dfa3b90b8633bee904a85 Author: Alan Garny '' Date: Wed Feb 11 09:23:50 2015 +0100 Slight update to the user documentation '[ci' 'skip].' commit f17257aaf05dd0062e1a72431d96fa654dc42ef7 Author: Alan Garny '' Date: Tue Feb 10 17:51:02 2015 +0100 Pretty CellML view: replaced '"Pretty' 'CellML"' with '"CellML' 'text"' '(closes' '#548).' commit 60d82b5ee14f0de3795d85c425acd61a4d227972 Author: Alan Garny '' Date: Tue Feb 10 17:30:38 2015 +0100 Pretty CellML view: some work on replacing its name with '"CellML' 'text"' '(#548)' '[ci' 'skip].' commit f6f5b69f45a575170a5b1f3816fde8659d75a1a1 Author: Alan Garny '' Date: Tue Feb 10 13:16:08 2015 +0100 Some minor cleaning up '[ci' 'skip].' Argh, accidentally removed the x bit in the previous commit. commit 9fa38ff86b8f758b7494fdac38c11debd21c0ee9 Author: Alan Garny '' Date: Tue Feb 10 13:09:29 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 0d2c545934831047a33461a3e4ab859275827af7 Author: Alan Garny '' Date: Tue Feb 10 00:27:31 2015 +0100 Continuous integration: added support for AppVeyor '(i.e.' CI on 'Windows)' '(closes' '#549).' commit 68733159eff48168fca9c5b265630a2f0e76d588 Author: Alan Garny '' Date: Mon Feb 9 23:44:53 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 0b502d4d13bb3ceb4e287176c1975d4b52c95f11 Author: Alan Garny '' Date: Mon Feb 9 23:43:19 2015 +0100 Windows: allow for runtests to work whether 'it'\''s' run using '"runtests.exe"' or '"runtests"' '[ci' 'skip].' commit 968ad52443bc348ad26c13a83728cb249a2254b5 Author: Alan Garny '' Date: Mon Feb 9 22:57:34 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit ed742acf761759bd8441d4af7959cfb42e39c2de Author: Alan Garny '' Date: Mon Feb 9 20:14:21 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 5c0ea4b81593ca7cb5b6b9893953a0ae28b6c0a1 Author: Alan Garny '' Date: Mon Feb 9 19:56:43 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 23c1116a5b4511a08ad4e34aec4ada1e1f5354ef Author: Alan Garny '' Date: Mon Feb 9 19:37:16 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 8365446a054b2de1059e231a418ff9a9cf590aa3 Author: Alan Garny '' Date: Mon Feb 9 17:29:37 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 40a7918ee386639afeba23a1c2d2ca17a31f9da3 Author: Alan Garny '' Date: Mon Feb 9 17:14:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit e1787266de49bf8dc14f2a29fe160af8c91391bc Author: Alan Garny '' Date: Mon Feb 9 16:27:04 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 452fa1bc72178b4fcd8d1bd70a3566403f87c5b9 Author: Alan Garny '' Date: Mon Feb 9 15:44:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 4f1e3f3282a04e56e02632a7a5339570ff7ff117 Author: Alan Garny '' Date: Mon Feb 9 15:28:54 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 10b30372a766b0394e91206a44197c21781235f1 Author: Alan Garny '' Date: Mon Feb 9 14:11:35 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit b03a416443834e043368f5d6ed019326411435b3 Author: Alan Garny '' Date: Mon Feb 9 14:04:07 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 987b57f76cacdd6b971c70e67872761aa4d43d77 Author: Alan Garny '' Date: Mon Feb 9 13:50:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 3812a2aae19194344b4c31b5a52c5dd31f20086d Author: Alan Garny '' Date: Mon Feb 9 13:24:40 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 8100e51b30c00675b34caaa5efb7aad95fff1afb Author: Alan Garny '' Date: Mon Feb 9 13:13:56 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 6d34cc194d32dd8fba4368cf3b5f12343ef790e3 Author: Alan Garny '' Date: Mon Feb 9 11:50:23 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit fe1d59302b8d81cae5f327763d0498e9cf72bf58 Author: Alan Garny '' Date: Mon Feb 9 11:42:18 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 9fd11cd3d8733400873f24c82c957a93fa2efefa Author: Alan Garny '' Date: Mon Feb 9 11:28:06 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 0767c09852f39e09cea38d39da5937e2c70b643e Author: Alan Garny '' Date: Mon Feb 9 11:21:00 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 124391916a529f32ace95b131fb6940701507673 Author: Alan Garny '' Date: Mon Feb 9 11:11:11 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 341332b9fa888847a43364e0e84104c2fd270c53 Author: Alan Garny '' Date: Mon Feb 9 11:07:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 3f5fef3f02b14ce73e196ba09854703b50aedafe Author: Alan Garny '' Date: Mon Feb 9 10:59:24 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit e2bd78acd0f27477d5d22affadb4373ad75e6f31 Author: Alan Garny '' Date: Mon Feb 9 10:48:30 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 439fbdc4673b0eea234eff28d25657e3d61eb38e Author: Alan Garny '' Date: Mon Feb 9 10:39:09 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 416a7eaacda2b9b90e111e8b870b424f74f2b067 Author: Alan Garny '' Date: Mon Feb 9 10:30:01 2015 +0100 AppVeyor: trying to build and test OpenCOR. commit 561c9fb9bf1a3a96aa47f343c0272dd0104b58d3 Author: Alan Garny '' Date: Mon Feb 9 10:27:58 2015 +0100 AppVeyor: trying a simple dir command. commit 75cd6938ad7a681cad8cecf3daedc678aaf4b378 Author: Alan Garny '' Date: Mon Feb 9 10:21:11 2015 +0100 AppVeyor: initial YAML file '[ci' 'skip].' commit 098e061325af36cf57566f1e60c87328aab65a6a Author: Alan Garny '' Date: Sat Feb 7 14:08:39 2015 +0100 New snapshots. commit a8445b3b5aa3452c1a37110b67b5051d0d9f2d1b Author: Alan Garny '' Date: Sat Feb 7 14:03:39 2015 +0100 New snapshots. commit a7550395dd3831c0368d22fc655697a63f81ef37 Author: Alan Garny '' Date: Sat Feb 7 13:23:18 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 51bc945d02f496c46e42924554369061dd4d23a3 Author: Alan Garny '' Date: Sat Feb 7 11:55:22 2015 +0100 New snapshots. commit bc2ee4b633f9221578582936dc2d142bff01d678 Author: Alan Garny '' Date: Sat Feb 7 11:50:39 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit 5f16bc1f79aa6e20ca29ef07b5cc20c334e82d49 Author: Alan Garny '' Date: Sat Feb 7 11:28:23 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(closes' '#494).' commit 74a8a220296996c3517356c4d90d2ff23227e0ea Author: Alan Garny '' Date: Fri Feb 6 19:42:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(closes' '#494).' commit 1310eff47d2a8b415149a76be054ca8c483a7322 Author: Alan Garny '' Date: Fri Feb 6 16:39:00 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 972fdeddd71ee54f82d7e375d2358fecace1925b Author: Alan Garny '' Date: Fri Feb 6 16:08:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 41aa767c3525f091de7874017237dd72427d40a3 Author: Alan Garny '' Date: Fri Feb 6 16:01:12 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 06aad2f52ba084fab2e221409f818dffadb2071d Author: Alan Garny '' Date: Fri Feb 6 15:45:39 2015 +0100 Documentation: put a link to our published article in both the user and developer documentations '(closes' '#547).' commit 91efd083ec7a43439ec5f900838bfe01ee0cdf53 Author: Alan Garny '' Date: Fri Feb 6 15:34:26 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit fc725bc772f8f4b34648bb6d56f50e2bd51eafb8 Author: Alan Garny '' Date: Fri Feb 6 15:15:00 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' The $'\342\200\230minus\342\200\231' and $'\342\200\230divide\342\200\231' are not n-ary operators. commit d22b5590fed9e70268d2fd292003bdd14833afee Author: Alan Garny '' Date: Fri Feb 6 15:03:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit b9487efde7dab828b59a8e5249aaa215d1880e44 Author: Alan Garny '' Date: Fri Feb 6 11:54:30 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit ad868b1d7f247a27ca1665d02067d4da74b10e06 Author: Alan Garny '' Date: Fri Feb 6 11:52:07 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit e0f68b9d0188e2aeba72e075951c94e076e849db Author: Alan Garny '' Date: Fri Feb 6 11:41:06 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit e60ce6ce934d31fb5dc1de2c823146d1cc31fa8a Author: Alan Garny '' Date: Fri Feb 6 11:29:11 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 6a3e35eba2dd4f3db423993fe24ca4d2daaa3a3c Author: Alan Garny '' Date: Fri Feb 6 11:28:12 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 9eb8093c26e2f4ffecee3901381fb0fd76d03e4b Author: Alan Garny '' Date: Fri Feb 6 11:20:24 2015 +0100 CellML support: prevent a file from importing itself '(closes' '#546).' commit a2612dd16f6ae50a8d6a7d30948c8e95864a2910 Author: Alan Garny '' Date: Fri Feb 6 11:18:23 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b42d75c79da1c3f271e6d45e9bdc4858318cd7c6 Author: Alan Garny '' Date: Thu Feb 5 19:19:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 77da91e1ecb3f3d19f7257aa640ede2e449d00f5 Author: Alan Garny '' Date: Thu Feb 5 19:15:37 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 4f588cac126e1072aa68d9f51c99e0411172836b Author: Alan Garny '' Date: Thu Feb 5 18:42:29 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b3ff978c8782477de44dfbf4efcc332ed26ef4ca Author: Alan Garny '' Date: Thu Feb 5 13:32:54 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit b2a7466150477cf15a2a081c15e8dc73a0d0baa4 Author: Alan Garny '' Date: Thu Feb 5 13:08:20 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit a6ad325b0289898f53b35826269c9d45906de474 Author: Alan Garny '' Date: Thu Feb 5 13:07:39 2015 +0100 Some cleaning up '[ci' 'skip].' commit 5b4aaa38a18a10ed1b40f7b071e13d374d7b8ec5 Author: Alan Garny '' Date: Wed Feb 4 19:16:19 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit cf00aff22caeca9dbc4d27b23024804a1309d31a Author: Alan Garny '' Date: Wed Feb 4 17:20:53 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit bc99d4e7401c0c8a110463c3c277145668805adf Author: Alan Garny '' Date: Wed Feb 4 15:38:51 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit f32f8eef4517b28f602ca4be8325c55fea07bb7e Author: Alan Garny '' Date: Wed Feb 4 13:46:37 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 835acd382bc1bc8d9d7c6d225a401851d4d2a0ee Author: Alan Garny '' Date: Wed Feb 4 11:15:50 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit a3c19d51f0b65c1fc14058412d63aabbc360aa4e Author: Alan Garny '' Date: Wed Feb 4 11:10:35 2015 +0100 Tests: improved the testing of string lists. commit 76de7b74aa63f7f81ed138d02d24eade7d49819e Author: Alan Garny '' Date: Wed Feb 4 10:03:56 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit be79963b3dbf8ba6afd8021fdef93f54f444fa95 Author: Alan Garny '' Date: Tue Feb 3 19:06:46 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit a8847537561cffe0a27b255fce9d08365b245279 Author: Alan Garny '' Date: Tue Feb 3 18:07:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit b9fe38618dde079d1a5328643871227102d1eb53 Author: Alan Garny '' Date: Tue Feb 3 18:00:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 103ee73eccc69bf5408cc7284d597f958fb5ab58 Author: Alan Garny '' Date: Tue Feb 3 17:18:35 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit eed11e48f8e7fab5739e259a4a91376ff01bdb45 Author: Alan Garny '' Date: Tue Feb 3 16:40:03 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 59feb6e1e0407ec057d6003c446d72d616a76ca5 Author: Alan Garny '' Date: Tue Feb 3 15:23:07 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 7ad03b2dde09fcaf003444d5f868715c788a0318 Author: Alan Garny '' Date: Tue Feb 3 15:07:16 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit e09713fe79ea38ac9d935d0ea36f7187bf3b0f1b Author: Alan Garny '' Date: Tue Feb 3 13:26:04 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 347993316f43b9e567339c77e428f707679aab3d Author: Alan Garny '' Date: Tue Feb 3 10:56:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit c3ce8b92c70177601e2961f10ef24f91dce4163d Author: Alan Garny '' Date: Tue Feb 3 10:46:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 59fac207f35c499d31c44e69de2d9f1f4fb8fdda Author: Alan Garny '' Date: Tue Feb 3 10:44:06 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 8c22957554aa24c06d8366270c1e0906a34017e0 Author: Alan Garny '' Date: Tue Feb 3 10:14:16 2015 +0100 Some minor cleaning up '[ci' 'skip].' Taking advantage of C++ 11. commit 28bf046c54be9bb857c32329b2666c4b5726f235 Author: Alan Garny '' Date: Mon Feb 2 20:41:17 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit e8b2194bf731284d2177a87b64b8e4c874e64bf4 Author: Alan Garny '' Date: Mon Feb 2 19:36:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 32804028db6fc06292557b5d3709064476a978e9 Author: Alan Garny '' Date: Mon Feb 2 19:34:35 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit d26db7bfbce17b16a58e459108048512c707b3f2 Author: Alan Garny '' Date: Mon Feb 2 19:10:58 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit d98e77fb5d594862128237165721f6016e78cf65 Author: Alan Garny '' Date: Mon Feb 2 18:50:17 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 985f65cd1b78f239938bc939602a96508f73cb96 Author: Alan Garny '' Date: Mon Feb 2 18:47:09 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 992f53dfa1e8de96753c09f96da9f84b8a57e7f8 Author: Alan Garny '' Date: Mon Feb 2 18:37:43 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit d6f8ea5be71b0ff422d1e8c56303016de3b8aa62 Author: Alan Garny '' Date: Mon Feb 2 18:17:59 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit afc8f0958ac9ce5c0c53fb02ce8ce785b29f76dc Author: Alan Garny '' Date: Mon Feb 2 17:25:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit ceeaf0e0f5462b0132dcd31e49f10da1d4adef8c Author: Alan Garny '' Date: Mon Feb 2 17:23:36 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit bc5bcd61831eaea182b8d838c56ee7bf3c843140 Author: Alan Garny '' Date: Mon Feb 2 17:04:30 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit d3abd999f47839e32ac985b42347381f1e4c3f55 Author: Alan Garny '' Date: Mon Feb 2 16:45:42 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 216a5c1a713146f18c32802b4a7997277f259bc1 Author: Alan Garny '' Date: Mon Feb 2 15:21:25 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 55136baf7fa21a3f89d6a1852a15a0e51bec58c4 Author: Alan Garny '' Date: Mon Feb 2 15:14:46 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit a9ab2dfa843177ce2c756f714628b8be325dd058 Author: Alan Garny '' Date: Mon Feb 2 14:49:27 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 89e36a9cb3280d1a5fd6b076f79f676f18388559 Author: Alan Garny '' Date: Sun Feb 1 11:29:53 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 722c8a1138734393853e791d9a62957664bc35fb Author: Alan Garny '' Date: Sat Jan 31 22:48:20 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 7c7213a2f1423284e9ad2d5d2b0f21f1d3fe62cb Author: Alan Garny '' Date: Sat Jan 31 22:41:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit f8a6b136837628bbc72ba2704d769a37dca29a74 Author: Alan Garny '' Date: Sat Jan 31 20:47:52 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 6b21babe6771cd35cc565fdcd5d2f4a2d2a4c695 Author: Alan Garny '' Date: Sat Jan 31 20:37:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 05af85471b30c5ffed3e976eb97512f848adffdb Author: Alan Garny '' Date: Sat Jan 31 14:35:14 2015 +0100 Editor list: 'don'\''t' look up items that 'don'\''t' have a valid line number '[ci' 'skip].' commit 4e725f0736f39782e7318c773673d2b81ed74a65 Author: Alan Garny '' Date: Sat Jan 31 14:30:04 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17).' commit 637a303e5e09accd41223822eb115f2c93064614 Author: Alan Garny '' Date: Sat Jan 31 14:06:45 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 76c675a6d8b7497522cab8230fece1be969ca5b6 Author: Alan Garny '' Date: Fri Jan 30 13:01:25 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Let the user know if we find a $'\342\200\230reaction\342\200\231' node. commit b39a91d4a03a4904b14a2773bb73379a28ab25d3 Author: Alan Garny '' Date: Fri Jan 30 11:22:58 2015 +0100 NSIS packaging: set the icon, vendor and version information '(closes' '#545).' commit 0c105d369f0550b7f43c03129c4ee2d9e3316468 Author: Alan Garny '' Date: Thu Jan 29 19:39:17 2015 +0100 OS X: fixed an issue with opening an OpenCOR-supported file by double clicking on it when OpenCOR is not already running '(closes' '#544).' commit 22db2e5c635448e39cb552d5b0524e756d6f8116 Author: Alan Garny '' Date: Thu Jan 29 19:00:43 2015 +0100 Help plugin: enable printing only if printers are available '(closes' '#543).' commit 8891af0f51c4cbc2224b4609af4f2f220a1e5e74 Author: Alan Garny '' Date: Thu Jan 29 18:15:07 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c1e5ebcc992b994a2baf8a1d4a583aefb13feade Author: Alan Garny '' Date: Thu Jan 29 18:09:14 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(closes' '#530).' commit e76e247d44737e27c2d457fdf9f13ed3fc957b34 Author: Alan Garny '' Date: Thu Jan 29 16:41:58 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit a0513c344d03a3ec53893605ab0c27d41e0cbd54 Author: Alan Garny '' Date: Thu Jan 29 11:10:42 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 3f201b8175e45891a8952d15aba601cdbf702f02 Author: Alan Garny '' Date: Thu Jan 29 09:55:54 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 93e95ede65c5e2ac76546ec301d7377abecd565f Author: Alan Garny '' Date: Wed Jan 28 20:15:27 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 1f31c340cdb31fbc2c4d54f128d2508e921d599e Author: Alan Garny '' Date: Wed Jan 28 18:48:54 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 45ce8ca0fff38fe79012c93d4185ac8a17080c7e Author: Alan Garny '' Date: Wed Jan 28 16:21:00 2015 +0100 Addressed an issue with some Qt libraries being ignored for some plugins when building QScintilla and Qwt manually '(closes' '#542).' commit 8a26610d08a044a28f46f10847416c570f17f347 Author: Alan Garny '' Date: Tue Jan 27 19:32:55 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 5dcface5d19af3bfaa7560d4d8d1581bf89ba7c0 Author: Alan Garny '' Date: Tue Jan 27 19:19:32 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 3b7ca491bb1e69e62ee44865e9c38df123eafd83 Author: Alan Garny '' Date: Tue Jan 27 19:03:19 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit fec97d44dbd3f77e8ca9d86762efa37db4362bfd Author: Alan Garny '' Date: Tue Jan 27 17:16:52 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit b6ef5054d2033d600583df16c5d1b89fc523b2d0 Author: Alan Garny '' Date: Tue Jan 27 16:47:39 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b8032c1bc02b7309157e9d4accea5cca13cd2db6 Author: Alan Garny '' Date: Tue Jan 27 16:08:39 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 2456c76d69610a4d50b177f854cacb4540ec0019 Author: Alan Garny '' Date: Tue Jan 27 15:01:29 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 041e24a2da1f516f17f9d8014bed01829c92a3e9 Author: Alan Garny '' Date: Tue Jan 27 14:43:56 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 2a22cfd03824a615e6f3a7bfe3a35be0466fe6ec Author: Alan Garny '' Date: Tue Jan 27 14:10:46 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 4077d3325be76737a8e7af11dd049c9ad3be99d0 Author: Alan Garny '' Date: Tue Jan 27 13:56:51 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 501126852b376e0f9f1f4517ccfe9711a3e72f87 Author: Alan Garny '' Date: Tue Jan 27 13:23:01 2015 +0100 CellML Annotation view: 'don'\''t' show ''\''empty'\''' component mappings '(closes' '#541).' commit 488ee3ed1f5850ca9b9de01b41d23ecc14cec4ac Author: Alan Garny '' Date: Tue Jan 27 11:42:13 2015 +0100 CellML Annotation view: 'don'\''t' show ''\''empty'\''' component mappings '(closes' '#541).' commit dd9049ef74bae508f03dfa0d2d0aa509d03a9a47 Author: Alan Garny '' Date: Mon Jan 26 18:38:52 2015 +0100 CellML Annotation view: 'don'\''t' show ''\''empty'\''' component mappings '(closes' '#541).' commit d31672ce46ef0a3aa54bc81bdafd3959c88fd25e Author: Alan Garny '' Date: Mon Jan 26 18:34:23 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7789eba14dd16804457d143cf1643e530ba25172 Author: Alan Garny '' Date: Mon Jan 26 18:18:23 2015 +0100 CellML Annotation view: mention the name, if any, of a group relationship '(closes' '#540).' commit 555273e1680b77bb2e2def8fe7937ef7cbcb8dff Author: Alan Garny '' Date: Mon Jan 26 18:01:50 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 57a2f74cbcea0b9d221395ae344282addc08e805 Author: Alan Garny '' Date: Mon Jan 26 17:55:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 886429131ee8bf60ae94c2d659a1d787af77f664 Author: Alan Garny '' Date: Mon Jan 26 17:33:59 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit b5793fd08273967e9364b32b0e46c4adcfb8a8c7 Author: Alan Garny '' Date: Mon Jan 26 16:15:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 06f011f586234a650699883e77ca3211a0eb8244 Author: Alan Garny '' Date: Mon Jan 26 16:08:41 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 94df9380ff93545cf69e0102a033f253ca08ae92 Author: Alan Garny '' Date: Mon Jan 26 14:44:52 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit a852e96fa7f9c6a0f9e8c6b3a9162f9118bdd91f Author: Alan Garny '' Date: Mon Jan 26 11:10:47 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit e0f54b1613527444ad03ff18237e00a7981e8a44 Author: Alan Garny '' Date: Fri Jan 23 19:12:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 57f8f136f14f0b7a0b885560ae429b62eb2a8fe9 Author: Alan Garny '' Date: Fri Jan 23 18:26:39 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17).' commit 00c427ff5c1a3a73ad06fd3c24a29cbc48631460 Author: Alan Garny '' Date: Fri Jan 23 17:55:05 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit fa2af8a761466a13e2084bf3dd5798b60de8ef59 Author: Alan Garny '' Date: Fri Jan 23 17:53:31 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit aa0ea3e2466fe7339693a475016c8bff7da18fb2 Author: Alan Garny '' Date: Fri Jan 23 17:40:07 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 9026664f73c6d6910bdacbf82a02c9ac659d1a91 Author: Alan Garny '' Date: Fri Jan 23 16:53:09 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit dc7800d3f87f65cd6bb0b9f992029d441a7c5001 Author: Alan Garny '' Date: Fri Jan 23 16:25:03 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b8b0fc6e8a9b569ac01e98a7717025af87c625af Author: Alan Garny '' Date: Fri Jan 23 15:35:44 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Dealing with the styling of strings. commit a550bcc06fb970c08ccdab106f3cfb54fc9ad163 Author: Alan Garny '' Date: Fri Jan 23 14:22:12 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Dealing with the styling of strings. commit cf7b4e69dd68d3e6b80b25e0c54dd60fdca61ecc Author: Alan Garny '' Date: Fri Jan 23 14:19:07 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Dealing with the styling of strings. commit bfc4d68c1f03bd38e7a064785290ef5615e59a0b Author: Alan Garny '' Date: Fri Jan 23 10:29:05 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 07e9bfe1f2fb7b7da416a380e17e1ea7abdd3bed Author: Alan Garny '' Date: Fri Jan 23 10:28:51 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 204a951382f3dd1d9ffd7191159f6bd8a8b3bde7 Author: Alan Garny '' Date: Fri Jan 23 09:21:02 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit ece614e176f201ba13ce05b9efe82da17ad4875d Author: Alan Garny '' Date: Thu Jan 22 18:37:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 904dcc0e5d8b8935ecd006a7f203d38c39e2ba1a Author: Alan Garny '' Date: Thu Jan 22 18:35:20 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit cd04a11bbd962d3320d097a035e2679688f1ca54 Author: Alan Garny '' Date: Thu Jan 22 18:18:05 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 58430f05d285e89f37944e47101e6de81d084f26 Author: Alan Garny '' Date: Thu Jan 22 17:48:15 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit cfcac6eec8f27fb47edaa8966705cdf31124e9ab Author: Alan Garny '' Date: Thu Jan 22 17:47:58 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit bcd612a8f4284d457a4ef70b4e8ec7ae6089c13b Author: Alan Garny '' Date: Thu Jan 22 17:20:32 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit fbd38e9a0ba1e3a8a660fd039992f61ec905f322 Author: Alan Garny '' Date: Thu Jan 22 16:19:20 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 8415191f3bd6a1c485c7bbf4613f9f141cbc3620 Author: Alan Garny '' Date: Thu Jan 22 15:10:11 2015 +0100 The previous commit fixed our issue with Travis-CI on OS X, so removed our debug information. Bloody Brew for using a symbolic link for the Qt 'libraries!' commit 8510af4252c4b518bb1da3ec94748677f3c6ef2e Author: Alan Garny '' Date: Thu Jan 22 14:42:58 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit a7fc1bb72f55d6adf88cec31bc159da735d6d0b0 Author: Alan Garny '' Date: Thu Jan 22 13:44:35 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 2d0e7ba217ed368ed8542b3104b292269237e348 Author: Alan Garny '' Date: Thu Jan 22 13:37:26 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 24dcd0aa2d60f8b847ad1ed527a31054031d04c8 Author: Alan Garny '' Date: Thu Jan 22 13:18:01 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 8e089f1f5fbf5c09f03fdc91b19f10802c00393c Author: Alan Garny '' Date: Thu Jan 22 11:59:10 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 2c6714a8a4112292dd836f40439cf8d3ca7f2501 Author: Alan Garny '' Date: Thu Jan 22 11:31:33 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 1abecd96f6d354386e9319e679fefb33099aa56b Author: Alan Garny '' Date: Thu Jan 22 11:05:34 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 81d41c3dfb0880733454914ff46cc47c0986d5ea Author: Alan Garny '' Date: Thu Jan 22 10:36:10 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 88d089707798956b27a35171c86ae8e31312eaab Author: Alan Garny '' Date: Thu Jan 22 09:36:28 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 3a75dc31e8ec62d547b6029e5405414192148e87 Author: Alan Garny '' Date: Wed Jan 21 20:48:42 2015 +0100 Travis-CI: trying to understand why the tests 'don'\''t' pass on OS X while they do locally. commit 4da6130c28538c26a6c147bee40fb7325f752572 Author: Alan Garny '' Date: Wed Jan 21 20:02:32 2015 +0100 Travis-CI: reverting our use of ninja to speed up the build since it keeps failing '(#539).' commit 6d1c5224afe2f2403019f49b014d2771c4365a18 Author: Alan Garny '' Date: Wed Jan 21 20:00:08 2015 +0100 Slight update to our main CMake file '[ci' 'skip].' commit 890cb91b9cfd3473a3f089f6bea6ef6905ffdb93 Author: Alan Garny '' Date: Wed Jan 21 19:39:23 2015 +0100 Travis-CI: some work on using ninja to speed up the build '(#539).' commit 8704bc73727baa428eba7cf7a4b6a0c058f51c89 Author: Alan Garny '' Date: Wed Jan 21 19:25:57 2015 +0100 Travis-CI: some work on using ninja to speed up the build '(#539).' Use the latest build of ninja. commit d0041166458a4278bbb973da15371862268e6c36 Author: Alan Garny '' Date: Wed Jan 21 18:55:05 2015 +0100 Travis-CI: some work on using ninja to speed up the build '(#539).' Account for the fact that g++ might fail at some $'point\342\200\246' commit 884e629a26305735dda9fdd7bde843e80ba9f735 Author: Alan Garny '' Date: Wed Jan 21 18:06:55 2015 +0100 Travis-CI: some work on using ninja to speed up the build '(#539).' Also enabled a new CMake policy that got introduced in CMake 3.1.0. commit d5e8c21fb3bc14b3e62e83850aa7b7d6f5ab1fc4 Author: Alan Garny '' Date: Wed Jan 21 17:36:45 2015 +0100 Travis-CI: some work on using ninja to speed up the build '(#539).' commit 2f936b53b35647f7a6d1cb5004778a5c6eb90375 Author: Alan Garny '' Date: Wed Jan 21 17:26:08 2015 +0100 Travis-CI: simplified the Linux part '(and' temporarily disabled the OS X 'part).' commit c80fdbce319f257c7a4a7430cf9400f0fe1bf156 Author: Alan Garny '' Date: Wed Jan 21 16:30:59 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit fb02f87e2c4193e44e8a1d85aea298d50a595589 Author: Alan Garny '' Date: Wed Jan 21 16:08:29 2015 +0100 CellML support: a file that is considered a CellML file keeps that status while it is opened '(closes' '#538).' commit d4855f9a421c2552c6f57296b986a099653b83bf Author: Alan Garny '' Date: Wed Jan 21 15:29:59 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit b417004af81daba0488a025f50592e261cf47b43 Author: Alan Garny '' Date: Wed Jan 21 10:57:14 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 9195dc96a1ca6fc51afba9277ac4b9a6a12b0d85 Author: Alan Garny '' Date: Wed Jan 21 10:56:49 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit a31ac879303154852c826064951270f838e4b63d Author: Alan Garny '' Date: Wed Jan 21 10:50:57 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests 'don'\''t' work. commit bbb930aa14b69489f574855905fa04992e96960a Author: Alan Garny '' Date: Wed Jan 21 10:32:18 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests 'don'\''t' work. commit a0c6a8c5fb8058ecdacec6cdf6365f7e456e3a58 Author: Alan Garny '' Date: Wed Jan 21 10:26:37 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests 'don'\''t' work. commit e48f7714609047d12951475280f9e54ad8b2edb9 Author: Alan Garny '' Date: Tue Jan 20 19:44:16 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6ced984869dc8dcfa0aa61a8152ee5bdf321fcbc Author: Alan Garny '' Date: Tue Jan 20 18:55:45 2015 +0100 Travis-CI: trying to find out why the Pretty CellML view tests 'don'\''t' work. commit 4fed0635877f12335d653e098b4960edf5f071a4 Author: Alan Garny '' Date: Tue Jan 20 16:51:50 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494).' commit 81132f05dd7f1283e3811cdc93c992f5d2c71df8 Author: Alan Garny '' Date: Tue Jan 20 15:40:01 2015 +0100 'Don'\''t' check for new versions of OpenCOR unless we are the main instance. Also remove global instances at suitable times '[ci' 'skip].' commit b323ec76d3c57f670b9014d534ec40a2bc0a7884 Author: Alan Garny '' Date: Tue Jan 20 10:21:02 2015 +0100 Tests: got all of them to pass fine on Windows. commit 88c5b7e217d1a5972d3f020d9b1507f74cf0b8f8 Author: Alan Garny '' Date: Mon Jan 19 18:43:54 2015 +0100 Copy rather than move our test programs '[ci' 'skip].' I originally thought it would be a good idea to move them, but this confuses CMake more than anything when having to rebuild something. commit a4c83f386123555891cb158d05c69156e8a273bf Author: Alan Garny '' Date: Mon Jan 19 18:04:22 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 16b5cc3a15604eec58d1cebb15f18db1f8a5eff0 Author: Alan Garny '' Date: Mon Jan 19 17:51:55 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 8e794732d77be96ecade46a2a1f8d5cb596df96a Author: Alan Garny '' Date: Mon Jan 19 17:25:29 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Allow for comments in a group definition. commit 5df377a12ada4fa0708824ca77f854234ca522bc Author: Alan Garny '' Date: Mon Jan 19 17:10:48 2015 +0100 Scintilla support: replace tabs with spaces '[ci' 'skip].' commit 4ba2183202ff5c8945105fcc9dfb8b000a251a35 Author: Alan Garny '' Date: Mon Jan 19 17:05:11 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Some work on our tests. Also, added support for unit definitions within components. commit e7d5a65a72b281b6eea7e1ce0a40766b0802f5e4 Author: Alan Garny '' Date: Mon Jan 19 15:56:43 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Make our tests pass. commit 52ee00f2e3a838588b69224bf93b6fe80f8ff205 Author: Alan Garny '' Date: Mon Jan 19 15:56:05 2015 +0100 CellML Tools tests: updated some expected output '[ci' 'skip].' Those should have been updated long ago, but because the tests were $'\342\200\230passing\342\200\231,' we overlooked $'them\342\200\246' commit 2706d2dfa25a1c03e292d0b5ee234cc69601b954 Author: Alan Garny '' Date: Mon Jan 19 15:55:13 2015 +0100 Tests: properly clean up ourselves once we are done '[ci' 'skip].' commit 07f3a5e03a7e86a1f319680483b64103c4feecd3 Author: Alan Garny '' Date: Mon Jan 19 15:54:48 2015 +0100 Tests: fixed some paths. This was actually broken '(for' the CellML Tools 'plugin)' for quite some 'time!' $'It\342\200\231s' just that because this resulted in the comparison of empty strings, then everything was $'\342\200\230fine\342\200\231\342\200\246' commit 68003391d963d1de27b74f3db7aab9c394d54428 Author: Alan Garny '' Date: Mon Jan 19 15:52:58 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 674fe3090eebbc6019770848f7de8ddfb3e96f28 Author: Alan Garny '' Date: Mon Jan 19 15:52:28 2015 +0100 Make files: move rather than copy the test executables '[ci' 'skip].' commit 20bae6e2470d9896746f6f0d98653cfe36dc8b6e Author: Alan Garny '' Date: Mon Jan 19 14:00:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Added a couple of '(failing' for 'now)' tests. commit 9867f1c95979aeb3855785a67f25b0e11e1b8a41 Author: Alan Garny '' Date: Mon Jan 19 13:50:25 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit c49ada5064ad8aceeb44d12fa268b6c59fe0e16b Author: Alan Garny '' Date: Mon Jan 19 13:36:27 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Had forgotten to trim the text before testing it for emptiness. commit 8140415bfe45be76e7d0385922daa173b0dde7b6 Author: Alan Garny '' Date: Mon Jan 19 13:29:29 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Addressed a small issue with comments. commit 429c202ca9992abc4739d262cd215a2315f60331 Author: Alan Garny '' Date: Mon Jan 19 11:11:34 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Made the syntax highlighting as fast as possible. commit 86eef4e164131f21b12e6da290a3a58a61c25db9 Author: Alan Garny '' Date: Sun Jan 18 17:32:47 2015 +0100 LLVM: done upgrading to version 3.5.1 '(closes' '#535).' commit a2d5697258a2dc531e2c3b5b01959da6de1fc57e Author: Alan Garny '' Date: Sun Jan 18 14:14:19 2015 +0100 LLVM: some work on upgrading to version 3.5.1 '[ci' 'skip].' commit 210d23c14b5e4efe1ccb10d751e772e809f235ac Author: Alan Garny '' Date: Sat Jan 17 11:35:20 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 01b1657405133ce0e5ad02e64bfb9f0f76eb8ab8 Author: Alan Garny '' Date: Sat Jan 17 11:06:02 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for $'th\342\200\246e' pretty CellML format '(#530)' '[ci' 'skip].' Improved our use of regular expressions to style keywords and numbers. commit 36313a65a0469463a94f52c1c5114e6eb77797f1 Author: Alan Garny '' Date: Fri Jan 16 19:59:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Fixed an issue that might be coming from QScintilla. commit 736a3f115368080d0625214661334ae6642b23c3 Author: Alan Garny '' Date: Fri Jan 16 19:51:19 2015 +0100 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit e52093a973d40b255653e20af98f178ac498185d. commit e52093a973d40b255653e20af98f178ac498185d Author: Alan Garny '' Date: Fri Jan 16 19:18:58 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 14432f6df7f9f7a1430d25a6f2b0829975319f2f Author: Alan Garny '' Date: Fri Jan 16 19:01:31 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Added support for comments. Also better handle the use of empty lines. commit a5162602dd0ca085a902aa35813bee0a4cb953be Author: Alan Garny '' Date: Fri Jan 16 18:02:21 2015 +0100 Addressed an issue with the CellML API '[ci' 'skip].' commit 08aa1edd9250c8d5dcbf5fd32d5cc2e9ff351ce7 Author: Alan Garny '' Date: Fri Jan 16 13:37:45 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Support the styling of groups. commit 597779e0b85d44d3af3c4ea8358f8e2955fdd907 Author: Alan Garny '' Date: Fri Jan 16 13:37:24 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Started handling groups. commit 73be7987d1727bc85be75bf6ed5b691b5f2cbbec Author: Alan Garny '' Date: Fri Jan 16 11:33:18 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Added support for the definition of variables. commit 99edab158a80372cc58795bb24bd50c0e29f3842 Author: Alan Garny '' Date: Fri Jan 16 11:32:48 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' Now handle the definition of variables. commit 63c56f3d35bc055dc1c589099501995aef5594d8 Author: Alan Garny '' Date: Fri Jan 16 10:58:50 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Can how style numbers. commit 743a2529c5436dc418e9ffcc16906591045b6c3d Author: Alan Garny '' Date: Fri Jan 16 09:54:15 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Added some keywords for standard units and prefixes. commit 79d05f6399513181ab0e71652a0084e437486ccb Author: Alan Garny '' Date: Fri Jan 16 09:22:57 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit e19c3de2c1c8109701f3a6a6e4bb8c13ae965a09 Author: Alan Garny '' Date: Thu Jan 15 19:13:01 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' We seem to be finally done with styling parameter groups together with // and /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/ cmake/ distrib/ doc/ ext/ formats/ i18n/ models/ res/ scripts/ src/ comments. commit 5559bd4e7716643a70037f900cd5eeff7f73d5c4 Author: Alan Garny '' Date: Thu Jan 15 17:43:09 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 905ccf19dfa2760b128428c19cc50a3fa1795386 Author: Alan Garny '' Date: Thu Jan 15 17:37:35 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit ff14bee44e73d584f5ad8f24caa8cd18e4b676af Author: Alan Garny '' Date: Thu Jan 15 17:26:02 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit aff44daa63acdfcab9897910c12bf37fe6dcc7fa Author: Alan Garny '' Date: Thu Jan 15 17:22:01 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 60bdbe356396f68f0939238a134cbfe68e6735d9 Author: Alan Garny '' Date: Thu Jan 15 14:25:47 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 79e85a61afb3a362c42a6d4fc9f6ede31a960c5c Author: Alan Garny '' Date: Thu Jan 15 14:20:31 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit cbda47c658e28ed494005cdab3d7f293223f2180 Author: Alan Garny '' Date: Thu Jan 15 14:20:19 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 2506339640482dc47120f9083c8cbbcbb2c2136f Author: Alan Garny '' Date: Thu Jan 15 11:30:00 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 93c28af299c527a4d87bc6ff379f01a9b067f71b Author: Alan Garny '' Date: Thu Jan 15 10:20:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit c48b10c2d190599bd69d6058207b67ba534c0634 Author: Alan Garny '' Date: Wed Jan 14 18:21:38 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' $'\342\200\230Normal\342\200\231' keywords $'shouldn\342\200\231t' be styled when in a parameter group, and $'\342\200\230parameter\342\200\231' keywords $'shouldn\342\200\231t' be styled when not in a parameter group. commit 9c005460d8f004ea4adcb59de5d88168dcc48f9d Author: Alan Garny '' Date: Wed Jan 14 18:16:23 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Comments should have precedence over parameter groups. commit dc0cd67a8eef24080b2e3fada854ce380da5068c Author: Alan Garny '' Date: Wed Jan 14 16:52:41 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Can now style parameter groups '(i.e.' '{XXX}).' commit 14fb839c40bcb1779d6e3734cb853c2237fb015d Author: Alan Garny '' Date: Wed Jan 14 14:16:10 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit f80b9a9c0f722c159221a69d101f2bfea79275fb Author: Alan Garny '' Date: Wed Jan 14 14:11:55 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit ec37e66d65bdfebebec55077aa5e0f22ae340ea1 Author: Alan Garny '' Date: Wed Jan 14 13:49:44 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 9b0e19372ccc907c8b7481b1db480bac3f9ba3ab Author: Alan Garny '' Date: Wed Jan 14 13:13:06 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 4a6407c8a78001fbaa89f620b05dc08fc514f461 Author: Alan Garny '' Date: Wed Jan 14 11:53:24 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Now style various groups of keywords. commit 5b284e627d0c83bdccddc92a94eae9326fbf9e48 Author: Alan Garny '' Date: Wed Jan 14 10:35:21 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 99b5757fe2bce98a1d92cbfa2143332b19a4cdbf Author: Alan Garny '' Date: Wed Jan 14 10:17:05 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Updated the user documentation. commit 760e60941dba3781b305ca9c3bf9d8a586f85937 Author: Alan Garny '' Date: Tue Jan 13 18:58:41 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Now handle both // and /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/ cmake/ distrib/ doc/ ext/ formats/ i18n/ models/ res/ scripts/ src/ comments. commit b383baa56a6d2013e4142d32fa926f6898a58b17 Author: Alan Garny '' Date: Tue Jan 13 18:46:14 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Addressed the case where full lines are surrounded by /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/. cmake/. distrib/. doc/. ext/. formats/. i18n/. models/. res/. scripts/. src/. commit ac18a1482e276f8114fb25155f7546301dba81f3 Author: Alan Garny '' Date: Tue Jan 13 18:42:42 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Addressed the case where full lines are surrounded by /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/. cmake/. distrib/. doc/. ext/. formats/. i18n/. models/. res/. scripts/. src/. commit 34584e673f71889c3f4594e1c9a3535adf3d3046 Author: Alan Garny '' Date: Tue Jan 13 18:41:43 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 03913db95113848336b76eee1d3f1f16053c206a Author: Alan Garny '' Date: Tue Jan 13 18:03:13 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Now handle both // and /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/ cmake/ distrib/ doc/ ext/ formats/ i18n/ models/ res/ scripts/ src/ comments. commit e2257a9331a5f9ab3f64f7ba804d081d51771860 Author: Alan Garny '' Date: Tue Jan 13 15:31:46 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit db0c791674fe0dd1ae77d637bb877cef58ef5f8e Author: Alan Garny '' Date: Tue Jan 13 14:30:34 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Several '(full)' lines that are selected are now commented using // rather than /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/. cmake/. distrib/. doc/. ext/. formats/. i18n/. models/. res/. scripts/. src/. commit b44fac1543c8899dd064f76c52be4554446e09f7 Author: Alan Garny '' Date: Tue Jan 13 14:20:10 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Several '(full)' lines that are selected are now commented using // rather than /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var XXX build/. cmake/. distrib/. doc/. ext/. formats/. i18n/. models/. res/. scripts/. src/. commit 3234966953a98feea8e93a54612be8118c63c2ef Author: Alan Garny '' Date: Tue Jan 13 14:19:12 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7db91abf81f01cf8c17688378b31e87ef8fd0291 Author: Alan Garny '' Date: Mon Jan 12 19:09:05 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' Before, we used to split the text to style into lines, but that caused problems when styling parameters that $'didn\342\200\231t' fit one line. Also, this would have caused problems for comments such as /Applications /Avatar /Library /Network /System /Users /Volumes /afs /bin /cores /dev /etc /home /installer.failurerequests /net /opt /private /sbin /tmp /usr /var I am a comment build/. cmake/. distrib/. doc/. ext/. formats/. i18n/. models/. res/. scripts/. src/. So, now, we style the whole line recursively. At this stage, we can style comments that use //. commit 3851e00cd03059ad3f9f24f5f293ca3f225be1bd Author: Alan Garny '' Date: Mon Jan 12 16:52:22 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Can now '(un)comment' some selected text or the current line '(if' no text is 'selected).' commit b8075cdac0e049f1c96668a06001ea79d451f2b0 Author: Alan Garny '' Date: Mon Jan 12 15:31:08 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit d2d30b84a1da4274a849d07639acdd884d7f557f Author: Alan Garny '' Date: Mon Jan 12 11:32:28 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 54c2f97d7d43ddcbdbac8665fbfba11a96f0ae94 Author: Alan Garny '' Date: Mon Jan 12 11:20:30 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' commit 07c1b9b8f5fd48a74be82f9622ece73ce16ff173 Author: Alan Garny '' Date: Fri Jan 9 18:08:15 2015 +0100 QScintilla-based editing views: fixed an issue with only the current view getting its read-only state updated '(closes' '#534).' commit 8b61fdbe04a59b685332dcab334ba4e3e295b358 Author: Alan Garny '' Date: Fri Jan 9 17:46:25 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 35c8e62022edd705866ac3dfaf6baed5d0c4da60 Author: Alan Garny '' Date: Fri Jan 9 17:03:38 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 92efb3ce72425b35c4c7a725fe608d3335ae667f Author: Alan Garny '' Date: Fri Jan 9 13:32:11 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit cd54a5d2d6317e757bbc335e5702bec2b083c447 Author: Alan Garny '' Date: Thu Jan 8 19:43:22 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 91644506752c74c072c6bffe11e05554ad19eed2 Author: Alan Garny '' Date: Thu Jan 8 18:39:47 2015 +0100 Some work on the pretty CellML view for a CellML file '(#17)' '[ci' 'skip].' Improved the way we detect whether the contents of the view has been modified. commit 509a91ea3269dbc151c61de53634f4d91974b24b Author: Alan Garny '' Date: Thu Jan 8 18:24:04 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 2a7d531e627d7fd8487349af13b5568681b8a8b0 Author: Alan Garny '' Date: Thu Jan 8 17:00:22 2015 +0100 QScintilla: updated the binaries now that we need QsciLexerCustom '(#530)' '[ci' 'skip].' commit f3f47ae219e6d7fd1c1dd1749cc38e6852364f38 Author: Alan Garny '' Date: Thu Jan 8 15:56:50 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit a067557b71ec857e6cfdbd11074f54e7254d0b62 Author: Alan Garny '' Date: Thu Jan 8 15:04:36 2015 +0100 Scintilla support: make a tab four spaces wide '[ci' 'skip].' commit 236e624491848cb153928f86ab50672424a75b28 Author: Alan Garny '' Date: Thu Jan 8 13:06:17 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 2991a8399ca22874edc61c38f1be71c3677eb468 Author: Alan Garny '' Date: Thu Jan 8 12:48:24 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit cc8a79ebbed16ed936e55660be003db2cd040c2f Author: Alan Garny '' Date: Thu Jan 8 11:22:53 2015 +0100 Pretty CellML view: some work on providing syntax highlighting for the pretty CellML format '(#530)' '[ci' 'skip].' commit 1c419df5c719c3ab19ed6fce6ad38c36a67f282d Author: Alan Garny '' Date: Thu Jan 8 10:38:44 2015 +0100 QScintilla support: changed the font to be used on Windows '[ci' 'skip].' commit 7b56b4261386498cff4f3ebde0c8b6750e9eda66 Author: Alan Garny '' Date: Wed Jan 7 17:21:26 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 6c35a3a4c854a76c4dfcd5380cdf77c37243b0e3 Author: Alan Garny '' Date: Wed Jan 7 15:04:34 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit fac52c77a243887eab33b1a9561898037ff9b86a Author: Alan Garny '' Date: Wed Jan 7 14:50:48 2015 +0100 CellML support: 'don'\''t' necessarily consider a file with a .cellml extension as a CellML file '(closes' '#533).' commit 6d33c181a54de71bd61a3d29159a10abe585d674 Author: Alan Garny '' Date: Wed Jan 7 13:39:14 2015 +0100 Pretty CellML view: some work on writing a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit df0c6ef430c88261de224ad9b47a7a36c9b170dc Author: Alan Garny '' Date: Tue Jan 6 17:57:00 2015 +0100 CellML support: improved CellML API related error messages '(closes' '#529)' '[ci' 'skip].' commit b2a3971feede685ff053282bc106af52231cc885 Author: Alan Garny '' Date: Tue Jan 6 17:53:49 2015 +0100 CellML support: improved CellML API related error messages '(closes' '#529).' commit c582a741318f3451438d11119d843ff76072429a Author: Alan Garny '' Date: Tue Jan 6 16:24:42 2015 +0100 Fixed an issue with reloading a non-CellML file in a CellML-based view doing nothing '(closes' '#528).' commit a162c5de34d1e24b03b236f29c505fa26f7c9320 Author: Alan Garny '' Date: Tue Jan 6 15:08:53 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 6a9e2de951bfe480ef7163a418052c5a17627699 Author: Alan Garny '' Date: Tue Jan 6 15:07:54 2015 +0100 Slight improvements to our CellML file manager '[ci' 'skip].' commit 1becaf10515ff718f0b3a14a87e6543a30a96f4d Author: Alan Garny '' Date: Tue Jan 6 13:53:28 2015 +0100 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit 7f6253e19883aa65d97f0a920d40fe3fd79fbc35. commit 7f6253e19883aa65d97f0a920d40fe3fd79fbc35 Author: Alan Garny '' Date: Tue Jan 6 13:52:24 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7444d077780feec05b1ad707519d3f3776ebec94 Author: Alan Garny '' Date: Tue Jan 6 13:25:25 2015 +0100 Improved the saving of a file '[ci' 'skip].' commit 067b8b000148820dfceaaad68488921f0cd72e60 Author: Alan Garny '' Date: Tue Jan 6 11:45:17 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit 7bbc9e211e566d4d91e175b1280000613a15c4a2 Author: Alan Garny '' Date: Tue Jan 6 11:20:04 2015 +0100 Improved our way to check that a file is a CellML file '[ci' 'skip].' In the case of a file that $'didn\342\200\231t' have the expected .cellml file extension, we used to load the file as an XML file and check whether its root element was a model element with either the CellML 1.0 or 1.1 namespace. Now, we simply try to load the file using the CellML API, which is better for the future '(e.g.' we will automatically handle future versions of 'CellML).' commit b29220f1511369f704a347c926d009e7ce978b2b Author: Alan Garny '' Date: Tue Jan 6 11:15:32 2015 +0100 Addressed an issue with the saving of a file using the Raw '(CellML)' view '[ci' 'skip].' We were not checking that the file had an editor associated with it. commit 8ab72d1d450ef4276e18cbd7d79916674f15bf5c Author: Alan Garny '' Date: Tue Jan 6 10:40:34 2015 +0100 Some minor cleaning up '[ci' 'skip].' commit d3ce010b61e32f9cd2e3629234078843e343d1ae Author: Alan Garny '' Date: Tue Jan 6 09:57:00 2015 +0100 Some minor cleaning up '[ci' 'skip]...' commit 74ec0a9e208ccc7017d08c368373b83d72fca6c2 Author: Alan Garny '' Date: Mon Jan 5 20:36:40 2015 +0100 CellML support: to load an invalid CellML file may crash OpenCOR '(closes' '#527).' commit 3c91bc1816fd3ccaa3c1c18367c0f48fd1f7f976 Author: Alan Garny '' Date: Mon Jan 5 19:34:59 2015 +0100 CellML support: to load an invalid CellML file may crash OpenCOR '(closes' '#527).' commit 64b660be5ad942567f09cefe4a34172574b1bcfa Author: Alan Garny '' Date: Mon Jan 5 19:07:22 2015 +0100 Some minor cleaning up. commit 3e370a7a286750449a13f95bfb0e01b10e225d72 Author: Alan Garny '' Date: Mon Jan 5 11:34:34 2015 +0100 Developer documentation: updated the reference to the version of the CellML API that we use '(closes' '#526).' commit 1b92af649278f9bc19ea54f8df0f12879f46694c Author: Alan Garny '' Date: Sun Jan 4 22:46:08 2015 +0100 jQuery: now use version 2.1.3 rather than version 1.11.2 '(closes' '#525).' commit 7e868634e7a1cb0ea7342c36a560dc1151d72955 Author: Alan Garny '' Date: Sun Jan 4 22:30:38 2015 +0100 jQuery: upgraded to version 1.11.2 '(from' version '1.11.1)' '(closes' '#524).' commit 8ff86645f65bc0ef552828f9c37e7ed3e3246041 Author: Alan Garny '' Date: Mon Dec 22 01:29:37 2014 +0100 New snapshots. commit 3d585b858283c54b193c0b741c7c4c451264cdcd Author: Alan Garny '' Date: Mon Dec 22 01:21:12 2014 +0100 Oops, forgot to remove a debug trace... '[ci' 'skip]' commit e3a384cae6f7120f286a298e9e5d75629bf48662 Author: Alan Garny '' Date: Mon Dec 22 01:19:03 2014 +0100 Saving files: now first save to a temporary file and then overwrite the original file '(closes' '#523).' commit 0e68b7e739c25e6fdd6ca435a4a212ebe36c365f Author: Alan Garny '' Date: Mon Dec 22 00:57:02 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file '(#523)' '[ci' 'skip].' commit e8c9ebafcd771da0aeefa3d504b49e1ae1fe5aed Author: Alan Garny '' Date: Mon Dec 22 00:36:53 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file '(#523)' '[ci' 'skip].' commit 71222b47e5b9d50b101e889a4e0f1a284a1a7a6a Author: Alan Garny '' Date: Sun Dec 21 23:46:37 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file '(#523)' '[ci' 'skip].' commit d1f65039827c7734eb911c5058d1b1342ba1799c Author: Alan Garny '' Date: Sun Dec 21 23:40:20 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5c1e50d99bb23160cca554c4b73f2d76d980763c Author: Alan Garny '' Date: Sun Dec 21 23:26:23 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file '(#523)' '[ci' 'skip].' commit 768caab0024a3414ab2f273737aec85a11073ab6 Author: Alan Garny '' Date: Sun Dec 21 23:25:41 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 17b65343409621a24b4505f3861347bebce36fe3 Author: Alan Garny '' Date: Sun Dec 21 23:08:07 2014 +0100 Saving files: some work towards first saving to a temporary file and then overwrite the original file '(#523)' '[ci' 'skip].' commit 520f644e1e85dc1b64ccaa5b797eb102d16b3a00 Author: Alan Garny '' Date: Sun Dec 21 23:02:13 2014 +0100 Slight change for the OS X build '[ci' 'skip].' commit 40d27d7a0c5a6141b43825281e1ee383e135acfc Author: Alan Garny '' Date: Sun Dec 21 22:53:00 2014 +0100 Some work related to retrieving and using temporary file names '[ci' 'skip].' commit b8a998b44b91114324c6df79853c715750ce1f20 Author: Alan Garny '' Date: Sun Dec 21 21:47:23 2014 +0100 Some cleaning up of our file manager code '[ci' 'skip].' commit b37323fcb30176601ea530c187f105d5daa1d147 Author: Alan Garny '' Date: Fri Dec 19 18:17:02 2014 +0100 Some minor cleaning up. commit f98d617205e39bafd550256e94eaeaa71a857209 Author: Alan Garny '' Date: Fri Dec 19 16:31:12 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 96856fc001f7c088a7dcbe583dd6f4249961cfed Author: Alan Garny '' Date: Fri Dec 19 16:27:00 2014 +0100 Fixed an issue about none of the recent snapshots working properly on vanilla Linux '(closes' '#519).' This basically reverts f543e70d4a0d378988ae44071d9cf30977bc3a2f. Why on earth did I ever do that in the first 'place?!' commit ab4f1de332bec44d7c951a64446d598f6dc77df0 Author: Alan Garny '' Date: Fri Dec 19 14:13:47 2014 +0100 Qwt library: upgraded to version 6.1.2 '(#522).' commit aaaf0ff34b221af9c3b4f811bf96674db58b8edf Author: Alan Garny '' Date: Fri Dec 19 13:26:28 2014 +0100 Qwt library: some work on upgrading to version 6.1.2 '[ci' 'skip].' commit 599a6d9af5b17864de737933b95e26e72af016ff Author: Alan Garny '' Date: Tue Dec 16 17:13:59 2014 +0100 Slight update to the developer documentation '[ci' 'skip].' commit 6e3c973a08365150e85b1123736b050a7b4cd232 Author: Alan Garny '' Date: Mon Dec 15 10:29:44 2014 +0100 Travis-CI: re-enabled OS X. Indeed, brew now uses Qt 5.4, so we ought to be fine. commit b6b2afa1a99ce8bc76e3873834d7f8637d5fd7d7 Author: Alan Garny '' Date: Mon Dec 15 09:53:11 2014 +0100 Slight update to the user documentation '[ci' 'skip].' commit 36d0d461438d0799b069e8a48025e1be9ba57e67 Author: Alan Garny '' Date: Sat Dec 13 09:25:24 2014 +0100 Removed the support for Windows XP and Windows Vista '(closes' '#520).' commit a58eab687fca2d5622277f37fea483dd21b4b23f Author: Alan Garny '' Date: Fri Dec 12 23:56:54 2014 +0100 Removed the support for Windows XP and Windows Vista '(closes' '#520).' commit 662a057dc2845bf8f06798219d792437cf30335a Author: Alan Garny '' Date: Fri Dec 12 18:03:14 2014 +0100 Removed the support for Windows XP and Windows Vista '(closes' '#520).' commit 7f49dad4228c49b4b9f06efed9f705092e278605 Author: Alan Garny '' Date: Fri Dec 12 17:48:38 2014 +0100 Windows: slight revert change to our main CMakeLists.txt file so that we can build on Windows with no plugins. commit 75e98864d3a91f394d634358999eba44479c1fde Author: Alan Garny '' Date: Fri Dec 12 09:31:43 2014 +0100 Travis-CI: only support Qt 5.4 on Linux for now. Indeed, brew is still with Qt 5.3.2, which breaks our $'build\342\200\246' commit 1b402bbee6aec03e67eb869a7bfdf257ba9f70b7 Author: Alan Garny '' Date: Fri Dec 12 09:24:23 2014 +0100 Travis-CI: testing Qt 5.4 on OS X. Not sure that brew is up to date with Qt 5.4, so we shall $'see\342\200\246' commit bd75f66d096e6222077dddccc69df64f98033db9 Author: Alan Garny '' Date: Fri Dec 12 09:00:40 2014 +0100 Travis-CI: testing Qt 5.4 on Linux. The PPA for Qt 5.4 seems to be available, so time to try it. commit 8314e3a3d6b25dcd334aece7ca0c4bcd52423eb4 Author: Alan Garny '' Date: Thu Dec 11 19:09:49 2014 +0100 Reverting commit f2d5af4794056ab99a47cdb385835aafa820e7d1 '(#514)' '[ci' 'skip].' commit 9c7ab894a7d639dc5767f0873834bf4b2a3ab1d9 Author: Alan Garny '' Date: Thu Dec 11 19:08:28 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 1cb2e27f4368a3c2c591735e6fdd93fe2ee8efaa Author: Alan Garny '' Date: Thu Dec 11 16:11:55 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 1f3898be889b4b10bd58c56069cf81b5c0695210 Author: Alan Garny '' Date: Thu Dec 11 16:02:24 2014 +0100 Revert '"Main' executable: only try the CLI version '(on' Linux and OS 'X)' if there is at least one argument '[ci' 'skip]."' This reverts commit 36bfa0be7f92f84015d58f902b4fa616f9a6757f. Indeed, completely forgot that we can start OpenCOR with some filenames as 'arguments!' commit 36bfa0be7f92f84015d58f902b4fa616f9a6757f Author: Alan Garny '' Date: Thu Dec 11 15:48:36 2014 +0100 Main executable: only try the CLI version '(on' Linux and OS 'X)' if there is at least one argument '[ci' 'skip].' commit 57ce9c32a57d1fbbcf3c6ab5abb968dcf3b6ce99 Author: Alan Garny '' Date: Thu Dec 11 14:10:42 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f2d5af4794056ab99a47cdb385835aafa820e7d1 Author: Alan Garny '' Date: Thu Dec 11 14:03:09 2014 +0100 Qt54: some work towards using Qt WebEngine instead of Qt WebKit '(#514)' '[ci' 'skip].' commit 873d49239462ca7a7d1477584698eae87379f96d Author: Alan Garny '' Date: Thu Dec 11 13:56:16 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 4ad1d699246fb815a38151f3be3ff0beccdac770 Author: Alan Garny '' Date: Thu Dec 11 13:55:24 2014 +0100 Qt: some work towards upgrading to Qt 5.4 '(#513)' '[ci' 'skip].' This updates our TRAVIS-CI script, which $'shouldn\342\200\231t' be executed since it requires using Qt 5.4 while neither of them is currently available on our Linux and OS X targets. commit 83321e455c23189f5f5ba7f9827f370a6cc43d71 Author: Alan Garny '' Date: Thu Dec 11 13:35:00 2014 +0100 Qt: some work towards upgrading to Qt 5.4 '(#513)' '[ci' 'skip].' commit 80bdf0a43396441a4b5cd514f5ef72069d8828a7 Author: Alan Garny '' Date: Thu Dec 11 11:14:59 2014 +0100 Qt: some work towards upgrading to Qt 5.4 '(#513)' '[ci' 'skip].' commit 299b3d720135745b6225653aa80a0a900b5872b3 Author: Alan Garny '' Date: Thu Dec 11 00:09:37 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 0ef68d1ab59121781d3516c47b126b3ff9083d98 Author: Alan Garny '' Date: Wed Dec 10 19:53:32 2014 +0100 Qt: some work towards upgrading to Qt 5.4 '(#513)' '[ci' 'skip].' commit fcfdddd3b823a74dd4bc07efc9c7e2fb4087957f Author: Alan Garny '' Date: Wed Dec 10 18:26:58 2014 +0100 Qt54: fixed an issue with getting a warning about having to instantiate the QApplication object first '(closes' '#517).' The issue was with 'OpenCOR::removeGlobalInstances()' being called after destroying guiApp. Yet, 'OpenCOR::removeGlobalInstances()' is the first method we call in 'main()' and $'everything\342\200\231s' fine 'there…?!' commit 11074f53a2119df9960926e7537844617bb7e9ff Author: Alan Garny '' Date: Wed Dec 10 18:01:44 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 2d3c4813c240521c7330787255d72a8588d49095 Author: Alan Garny '' Date: Wed Dec 10 17:45:22 2014 +0100 Temporarily disable OS X build on Travis-CI. This is because we updated to Qt 5.4 and brew $'doesn\342\200\231t' yet have it. commit 9ea98c26086cc6b8011f568fad4d0fac4b069bac Author: Alan Garny '' Date: Wed Dec 10 17:06:01 2014 +0100 OpenSSL: updated Windows binaries to version 1.0.1j '(closes' '#515).' commit 1a4a5b1fe51fb7e9168af86afa6d314f5076bd10 Author: Alan Garny '' Date: Wed Dec 10 16:11:07 2014 +0100 Qt: some work towards upgrading to Qt 5.4 '(#513)' '[ci' 'skip].' commit b8ffb7734f12cf09e566e9927e92a02fed4abc80 Author: Alan Garny '' Date: Tue Dec 9 17:48:06 2014 +0100 CellML Annotation view: fixed an issue with the same cmeta:id being potentially used for two different CellML elements '(closes' '#510).' commit 38eea9bea438ef0b4a5136c6ffa283eda59ce756 Author: Alan Garny '' Date: Tue Dec 9 17:34:14 2014 +0100 Cleaned the CellML files in the OpenCOR repository '(closes' '#512).' commit f03b115f91d0dca8526e7cb371ae5d665e05a859 Author: Alan Garny '' Date: Tue Dec 9 17:19:19 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 7cbce2086251444716af25b35a1a2e158b80cb3f Author: Alan Garny '' Date: Tue Dec 9 16:44:50 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 24e574815a13246bfcc70bf267a7052113ca16d3 Author: Alan Garny '' Date: Tue Dec 9 16:40:24 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5566e9aa1554be78629068aefc82e1cd28d13cf5 Author: Alan Garny '' Date: Tue Dec 9 15:58:20 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 913aabaab3fcfd372d1c164003b8121f6c282b7c Author: Alan Garny '' Date: Tue Dec 9 14:13:23 2014 +0100 Viewer widget: improved rendering of Greek symbols '(closes' '#511)' '[ci' 'skip].' commit 9a48451d459693fe4462886323a8fd8d26325eaa Author: Alan Garny '' Date: Tue Dec 9 14:07:37 2014 +0100 Viewer widget: improved rendering of Greek symbols '(closes' '#511).' commit a525db31b5e7c18229ee84a1ff4f5d2c4b675881 Author: Alan Garny '' Date: Tue Dec 9 14:06:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 8451fca4464a46131900b144d9acc8c917d5f3e2 Author: Alan Garny '' Date: Tue Dec 9 11:32:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 2063601bf909a89657710e4b4211b874933c58b2 Author: Alan Garny '' Date: Mon Dec 8 19:37:08 2014 +0100 Increased the number of cmeta:ids we can have in a CellML file '[ci' 'skip].' commit bffa6aed56cae2fb40da2274279591ee32c5216b Author: Alan Garny '' Date: Mon Dec 8 19:30:32 2014 +0100 Increased the number of cmeta:ids we can have in a CellML file '[ci' 'skip].' commit 5d9a3f48952358801d5f937a3e5def029c6115ab Author: Alan Garny '' Date: Mon Dec 8 19:25:25 2014 +0100 Slight improvement to the serialisation of a QDomDocument '[ci' 'skip].' commit a9188e940e525acf30c63dc250819e49c1caf442 Author: Alan Garny '' Date: Mon Dec 8 18:54:51 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e25695795b367c687a75097d8fbdffa21199f629 Author: Alan Garny '' Date: Mon Dec 8 18:11:26 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 98fed634349621767fa0b66fab60a0fab7a9c95e Author: Alan Garny '' Date: Mon Dec 8 18:09:08 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b3ff727d433fe82e42cac9112930c15ff349741b Author: Alan Garny '' Date: Mon Dec 8 17:33:01 2014 +0100 Editor list widget: add support for hint items and improve format of item text '(closes' '#509).' commit c4c03903c87538292161ab16038c67a9ce6564c6 Author: Alan Garny '' Date: Mon Dec 8 16:02:13 2014 +0100 'Don'\''t' check for new versions at startup when we are in debug mode '[ci' 'skip].' The idea is not to have OpenCOR hang up unnecessarily. commit c395467ca785bd96651974d1844e81bcf3b3c238 Author: Alan Garny '' Date: Mon Dec 8 09:02:41 2014 +0100 Developer documentation: updated the version of the Oxygen library '[ci' 'skip].' commit b32c83395d21403afe9b84340be4384dfa7c3603 Author: Alan Garny '' Date: Fri Dec 5 20:58:31 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 747a2bc3024357bd37989c9a637911b7276ab6b0 Author: Alan Garny '' Date: Fri Dec 5 20:46:14 2014 +0100 New snapshots. commit 765b1696f0e8fda6dcff1de9af3371a2bfa4b685 Author: Alan Garny '' Date: Fri Dec 5 20:45:31 2014 +0100 Checking for updates '(closes' '#1).' commit e786651592ec5ce2abb920417d4ddc094ee85e4c Author: Alan Garny '' Date: Fri Dec 5 18:13:39 2014 +0100 Checking for updates '(closes' '#1).' commit 4fe8705eed1823d6fcde9b3d437171db6f6ca254 Author: Alan Garny '' Date: Fri Dec 5 16:56:13 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit f86300ea8566215ed7765dd950d91d3034e96317 Author: Alan Garny '' Date: Fri Dec 5 16:16:20 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit d87ce2db2d4e4b729afaa15fd0e06b175a969c30 Author: Alan Garny '' Date: Fri Dec 5 16:04:31 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit eeecdad9a30c44b7889eda788ab254cb2752616e Author: Alan Garny '' Date: Fri Dec 5 15:00:38 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit 5ab5ee58696ebc0d85aef1b422f48307ab23e1d4 Author: Alan Garny '' Date: Fri Dec 5 11:20:47 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit 5cdd23abe819eb4692fe36e300c62720bad925d7 Author: Alan Garny '' Date: Fri Dec 5 11:02:56 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit 6108389eed1aa6c273e79bf2ea952e4435cf3144 Author: Alan Garny '' Date: Fri Dec 5 09:26:01 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit bc21c81ea93327bd2dfe8341657acfd772d77ae0 Author: Alan Garny '' Date: Fri Dec 5 09:25:48 2014 +0100 Some work on checking for updates '(#1)' '[ci' 'skip].' commit 545f528077105973879ee7f395cd1168284e0923 Author: Alan Garny '' Date: Thu Dec 4 16:17:04 2014 +0100 Main executable: removed dependencies on some of the Core plugin features '(closes' '#508).' Windows and its importing/exporting of $'classes/functions\342\200\246' ':(' commit 8a7f85585a3d989570e60476dfc4eff1497869da Author: Alan Garny '' Date: Thu Dec 4 16:05:15 2014 +0100 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit 24ba526d3616a2c90f746c291fcb6848f69e6cdf. commit 24ba526d3616a2c90f746c291fcb6848f69e6cdf Author: Alan Garny '' Date: Thu Dec 4 15:52:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f2a47d9b4106bb3fc6c81d5161c84e0ab63714f7 Author: Alan Garny '' Date: Thu Dec 4 14:55:43 2014 +0100 Main executable: removed dependencies on some of the Core plugin features '(closes' '#508).' Oops, forgot to update the CLI version of OpenCOR on $'Windows\342\200\246' commit 0a373f0739bed941c73f09570e27a8384fedaecc Author: Alan Garny '' Date: Thu Dec 4 14:50:14 2014 +0100 Main executable: removed dependencies on some of the Core plugin features '(closes' '#508).' I initially wanted to keep common.cpp/.h for the main executable, but that $'didn\342\200\231t' work for the CLI version of OpenCOR on Windows since common.cpp/.h contains both CLI and GUI utilities. So, now, we have cliutils.cpp/.h and guiutils.cpp/.h rather than common.cpp/.h, which means that the former cliutils.cpp/.h and guiutils.cpp/.h are now corecliutils.cpp/.h and coreguiutils.cpp/.h. commit 39b8f72b87b6986d6eae18b3bf4e191fbd2cc403 Author: Alan Garny '' Date: Thu Dec 4 11:19:09 2014 +0100 Main executable: removed dependencies on some of the Core plugin features '(closes' '#508).' commit 06fce14f14f978b7d24c6192997dfb286ceb5412 Author: Alan Garny '' Date: Thu Dec 4 10:27:41 2014 +0100 Main executable: removed dependencies on some of the Core plugin features '(closes' '#508).' commit fcc7a1c6da3fcbc1ed96faee73448900d613f8ff Author: Alan Garny '' Date: Thu Dec 4 10:20:22 2014 +0100 Some work on check for updates feature '(#1)' '[ci' 'skip].' commit ee34047470368a086720bd54c24e4759b12357c5 Author: Alan Garny '' Date: Thu Dec 4 10:13:30 2014 +0100 Some work on check for updates feature '(#1)' '[ci' 'skip].' commit e4935e32b6f00e835dbc8bac2396dff5f43323cf Author: Alan Garny '' Date: Thu Dec 4 09:40:44 2014 +0100 CellML export to user-specified format: updated the Python format '[ci' 'skip].' See https://github.com/cellmlapi/cellml-api/pull/7. commit 35aea2cdf7be122add1f40e33af2e57805c1a734 Author: Alan Garny '' Date: Wed Dec 3 18:00:57 2014 +0100 Main executable: some work towards removing dependencies on some of the Core plugin features '(#508)' '[ci' 'skip].' commit c9bb47ce0576d4c9d710ca2834645f6a4ab347f4 Author: Alan Garny '' Date: Wed Dec 3 13:07:00 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit d8b475a8980cc9f8793a1129e136e7bd9a337414 Author: Alan Garny '' Date: Wed Dec 3 11:33:15 2014 +0100 CellML Annotation view: handle possible SSL errors '[ci' 'skip].' commit cd77aa4aff2c4ed3e79a13da46e65ea89bb22413 Author: Alan Garny '' Date: Wed Dec 3 11:28:44 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit a723a0794d6ed94cbf8ca932a9fd50b53abbc047 Author: Alan Garny '' Date: Wed Dec 3 10:37:22 2014 +0100 Documentation: slight update to the developer documentation '[ci' 'skip].' commit 297ff89d78768bbf93927ba53366df739bfd26ec Author: Alan Garny '' Date: Wed Dec 3 10:35:34 2014 +0100 CellML Annotation view: handle possible SSL errors '[ci' 'skip].' commit b59bb2848b62caa719a8aedd6075ccb5fd754a34 Author: Alan Garny '' Date: Tue Dec 2 19:22:26 2014 +0100 Some work on the update feature '(#1)' '[ci' 'skip].' commit 92df9c12489fbe9584cd031de525f6d74adeb685 Author: Alan Garny '' Date: Tue Dec 2 19:06:09 2014 +0100 Rely on JSON files to show what is new in OpenCOR '(closes' '#506).' commit b13b1d67be5c242e837f1781e1cbff0d4d914ded Author: Alan Garny '' Date: Tue Dec 2 15:27:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c17a278d61e47d7fd3430672b3c482dd3e9d334f Author: Alan Garny '' Date: Tue Dec 2 15:07:06 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 3a2d13be1661f207682564f9a926431e64943c6e Author: Alan Garny '' Date: Tue Dec 2 11:19:52 2014 +0100 Rely on JSON files to download the different versions/snapshots of OpenCOR '(closes' '#505).' Those are not pure JSON files anymore, but JavaScript files that contain some JSON. Indeed, to have pure JSON files prevented us from testing the download pages locally. The only way to test them was through a web server, which was exactly what we want to avoid '(see' issue '#490).' The current solution still allows us to do what we need for issue '#1,' so we are fine. $'It\342\200\231s' just not as $'\342\200\230neat\342\200\231\342\200\246' commit 4afd5cdfeb1d48bc7ae598925eae5f074be1b145 Author: Alan Garny '' Date: Tue Dec 2 09:46:35 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit afa175a0c7f5af56bcdfda181e2d6a7846103692 Author: Alan Garny '' Date: Mon Dec 1 18:56:11 2014 +0100 Removed some Qt libraries, which are not needed anymore by plugins on OS X. Probably the result of some Qt update, on which I $'didn\342\200\231t' pick $'up\342\200\246' commit 6e055f013fe2e66ed6ff054f935ac8cfb0aeb5da Author: Alan Garny '' Date: Mon Dec 1 17:22:05 2014 +0100 Rely on JSON files to download the different versions/snapshots of OpenCOR '(closes' '#505).' commit 9e4e0c34780b74cafd3ffe90b25d08ea4a8d6d19 Author: Alan Garny '' Date: Mon Dec 1 14:05:13 2014 +0100 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit 5c22c16917e7b9d7c6885ccba09c6443043d2c1f. commit 5c22c16917e7b9d7c6885ccba09c6443043d2c1f Author: Alan Garny '' Date: Mon Dec 1 11:04:22 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 76bdc1a4d6346a160a46c0ef7cbe750b80c435a7 Author: Alan Garny '' Date: Sat Nov 29 18:39:41 2014 +0100 CellML Annotation view: improve the setting of the modified state of a CellML file '(closes' '#504).' commit 546149ef941e6400932c78f3320f9e87b5d30b69 Author: Alan Garny '' Date: Sat Nov 29 18:33:26 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit a4719d15473da35c1adca183ac2d5440e47e44b4 Author: Alan Garny '' Date: Fri Nov 28 18:42:29 2014 +0100 CellML Annotation view: improve the setting of the modified state of a CellML file '(closes' '#504).' commit 7184278fcdb0bc131f84e8aa4c8f805935b98c02 Author: Alan Garny '' Date: Fri Nov 28 17:00:54 2014 +0100 Raw CellML view: add the '"CellML' 'Validation"' menu to the 'editor'\''s' context menu '(closes' '#503).' commit 2bf83780f9272d84db19a52605336cfce9b122dc Author: Alan Garny '' Date: Fri Nov 28 16:58:38 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f2b5fa05626a97454da3da606181e721754b5795 Author: Alan Garny '' Date: Fri Nov 28 14:49:07 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f1dcf50ec128c213c73ed3fc90f8bbe233d725c6 Author: Alan Garny '' Date: Fri Nov 28 14:16:53 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 6593f982cb91ab9e2607812bb11d47af0e609fb8 Author: Alan Garny '' Date: Thu Nov 27 19:12:27 2014 +0100 New snapshots. commit d3177099a58791a0fde0ee96e9d7c86e44658d1b Author: Alan Garny '' Date: Thu Nov 27 19:02:29 2014 +0100 Documentation: disabled references to the Pretty CellML view '[ci' 'skip].' This is clearly temporary until we actually ship OpenCOR with the Pretty CellML view, which we $'don\342\200\231t' for the moment in our snapshots. commit 4f46a1c7a6e861c613f81792fcb1e8c0de37b7ad Author: Alan Garny '' Date: Thu Nov 27 18:47:26 2014 +0100 User documentation: slight update to the 'what'\''s' new section '[ci' 'skip].' commit 55bf2714020f32d6929b3555ddd132bab04e5067 Author: Alan Garny '' Date: Thu Nov 27 18:45:42 2014 +0100 Raw CellML view: fixed an issue with widgets getting resized upon reloading a file when the view is not active '(closes' '#501).' This also fixes some other GUI-related issues, which I forgot to $'document\342\200\246' commit ceec0458cbcb89516621db0989b88b6835743f7d Author: Alan Garny '' Date: Thu Nov 27 16:18:54 2014 +0100 Raw CellML view: some work on fixing issue with widgets getting resized upon reloading a file when the view is not active '(#501)' '[ci' 'skip].' commit db116305b28ec5090935ad4c20c0e95cfa92ca31 Author: Alan Garny '' Date: Wed Nov 26 18:36:24 2014 +0100 CellML Annotation view: fixed a crash that occurs after adding annotation, saving, removing the annotation and resaving '(closes' '#495).' Argh, had forgotten to update one of our sample 'plugins!' commit 64c8efcb94c56247d26aacec3f136846446c032d Author: Alan Garny '' Date: Wed Nov 26 18:13:28 2014 +0100 CellML Annotation view: fixed a crash that occurs after adding annotation, saving, removing the annotation and resaving '(closes' '#495).' commit 9f495ca192215c337c0128527f6bd053c96490f3 Author: Alan Garny '' Date: Wed Nov 26 16:26:55 2014 +0100 CellML Annotation view: some work towards fixing a crash after adding annotation, saving, removing the annotation and resaving '(#495)' '[ci' 'skip].' commit 691417b2cb9838af7a85bc6eae82e6a3d5161ef6 Author: Alan Garny '' Date: Wed Nov 26 15:34:29 2014 +0100 Some minor cleaning up. What is that $'\342\200\234considered' $'modified\342\200\235' status in the File 'class?' Some quick tests seem to indicate that it is not 'necessary?…' commit f126f707f1411e4250513964474cc33a71c33300 Author: Alan Garny '' Date: Wed Nov 26 15:05:58 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit d66131bbff4d88cbecc3161d626d40822475dc54 Author: Alan Garny '' Date: Wed Nov 26 10:09:57 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit d50783a3efc7a8b5aac741dcc0c590c87f4f310c Author: Alan Garny '' Date: Wed Nov 26 09:49:25 2014 +0100 $'\020\020Developer' documentation: updated the version of the Oxygen library '[ci' 'skip].' commit 6f7e446322343e03af3e1bce854e7fb54471c4b9 Author: Alan Garny '' Date: Tue Nov 25 17:45:55 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b5238afd448010d87acfba48b59b47a36316ef40 Merge: a85fd47e9 3ae190a48 Author: Alan Garny '' Date: Tue Nov 25 14:00:39 2014 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit a85fd47e971e86fc06515519efbd8df5e0623ce7 Author: Alan Garny '' Date: Tue Nov 25 13:59:56 2014 +0100 Windows build: added the Xml library to the CLI version of OpenCOR '[ci' 'skip].' This is required for qDomDocumentToString '(in' the CLI 'utilities).' commit 3ae190a4841c65ed6f7d54630772eeceefbb19b8 Author: Alan Garny '' Date: Tue Nov 25 13:45:15 2014 +0100 Updated the CellML files we ship with OpenCOR '[ci' 'skip].' This is a result of our improved serialisation of CellML files '(see' '#497).' commit 9df325657a6202b5126aaa801dcf5f487dfea9d0 Author: Alan Garny '' Date: Tue Nov 25 13:42:49 2014 +0100 CellML support: beautify the serialisation of a CellML file '(closes' '#497).' The difference with the previous solution is that now we do it the $'\342\200\230proper\342\200\231' way, i.e. we rely on 'QDomDocument::save()' as much as possible. commit 5ab2384e390a71389e0d30a2f4cb73ba592097eb Author: Alan Garny '' Date: Mon Nov 24 17:06:21 2014 +0100 Updated the CellML files we ship with OpenCOR '[ci' 'skip].' This is a result of our improved serialisation of CellML files '(see' '#497).' commit aca16f2a654908733cfcda46649052b937c7322c Author: Alan Garny '' Date: Mon Nov 24 17:05:33 2014 +0100 CellML support: beautify the serialisation of a CellML file '(closes' '#497).' The difference with the previous solution is that now we ensure the order of the attributes. When it comes to XML, it $'doesn\342\200\231t' matter whether an attribute comes before another or not. However, to have attributes sorted makes it for easier comparison, which can be quite handy at times. commit 9d6ca318e45b2b5e86dd19daf70f87fd0f5dfc22 Author: Alan Garny '' Date: Mon Nov 24 16:29:16 2014 +0100 CellML Annotation view: prevent the annotation of a malformed CellML file '(closes' '#499).' commit 06948b329d50d7be9edea126cf87812fa9586b4b Author: Alan Garny '' Date: Mon Nov 24 14:52:18 2014 +0100 Slight improvement '[ci' 'skip].' commit d070f169ed58bd1b63b0578036e25ec5129030e4 Author: Alan Garny '' Date: Mon Nov 24 13:33:31 2014 +0100 CellML support: remove a 'model'\''s' RDF node, should there be no annotations '(closes' '#498).' commit 5abc1ae2105be7ba05ffa1254e4b3dc58e0713f1 Author: Alan Garny '' Date: Mon Nov 24 11:46:10 2014 +0100 CellML support: remove the XML base value from the serialisation of a CellML file '(closes' '#496).' commit 47f2e147024ddb3d41a6919a1ab1c807bed4efec Author: Alan Garny '' Date: Mon Nov 24 11:43:34 2014 +0100 CellML support: beautify the serialisation of a CellML file '(closes' '#497).' commit 0d15929c3a323a192d2b55e983f13b0573f4a798 Author: Alan Garny '' Date: Mon Nov 24 11:21:07 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f587f5730758871ad5e3c0ad6bd87f0b4b9b0452 Author: Alan Garny '' Date: Sat Nov 22 18:50:09 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 1a1798334f1d0491805209ddf7beb29ec35f25f0 Author: Alan Garny '' Date: Thu Nov 20 17:57:06 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 03437035a8bb239f47d1ce18cf3e9d40af1027fd Author: Alan Garny '' Date: Tue Nov 18 18:42:11 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b02407f299f9108cc914fa711fa49b7ab9ad98d1 Author: Alan Garny '' Date: Tue Nov 18 17:53:01 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 24107a41ca28256372c5772a300bc2a2c2846da9 Author: Alan Garny '' Date: Tue Nov 18 15:25:13 2014 +0100 Pretty CellML view: make sure that an issue, if any, is properly shown '(#17)' '[ci' 'skip].' commit 3088112277f620633fbb77ab99b933444d16e7d5 Author: Alan Garny '' Date: Tue Nov 18 15:15:37 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit ae27acfb45f5b3cf15f4717a29a226dd2d3a801b Author: Alan Garny '' Date: Tue Nov 18 15:00:35 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 8edf20cd1270f825a609474cca07136ef7da45bc Author: Alan Garny '' Date: Tue Nov 18 14:59:13 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 6060bee0b0630245e26eb4dbd647fca8f4f90590 Author: Alan Garny '' Date: Mon Nov 17 20:51:45 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 6488d63989573d058f5690c87a182cf6f77c9c3e Author: Alan Garny '' Date: Mon Nov 17 20:42:44 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 77c0e15e92b35d43c7253a1496d1b1684b85e2e2 Author: Alan Garny '' Date: Mon Nov 17 20:42:03 2014 +0100 Pretty CellML view: check whether an editor is useable '(#17)' '[ci' 'skip].' This is useful in case we want to open an invalid CellML file using the Pretty CellML view. commit 3f4433c5df04df4808570a29453320862653ff45 Author: Alan Garny '' Date: Mon Nov 17 18:46:51 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f84e57198e53146eb52694931ce5f21467b7c2f4 Author: Alan Garny '' Date: Mon Nov 17 17:30:31 2014 +0100 Pretty CellML view: some minor work on CellML validation '(#17)' '[ci' 'skip].' commit 40f1fc107fda5e14fb4fe92f7dbf30dbcca6516b Author: Alan Garny '' Date: Mon Nov 17 17:25:58 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 93dd06c28f0d0c7dde19f979636747c2f9db417d Author: Alan Garny '' Date: Mon Nov 17 17:09:07 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f9701bb66b35da7027336bda041b1714e019a3db Author: Alan Garny '' Date: Mon Nov 17 16:46:37 2014 +0100 Pretty CellML view: updated the way we detect the contents of an editor has been modified '(#17)' '[ci' 'skip].' commit 83af1350a8bff644a9cef1f8a73c5ed45e2dedcf Author: Alan Garny '' Date: Mon Nov 17 15:23:12 2014 +0100 Pretty CellML view: some work on a CellML to pretty CellML converter '(#494)' '[ci' 'skip].' commit 766c078b9fa44dbc8b520fe3a67c1f8f2ba4ed7c Author: Alan Garny '' Date: Thu Nov 13 16:29:57 2014 +0100 Single cell view: prevent the parameters section from being collapsed '(closes' '#493).' commit db6e55f196043c208837a6076d6c5c0efb5ea482 Author: Alan Garny '' Date: Wed Nov 12 16:14:34 2014 +0100 Single cell view: prevent the parameters section from being collapsed '(closes' '#493).' commit 3a8f8ccbad821112d7f28ca1b32fbe3c1457600c Author: Alan Garny '' Date: Wed Nov 12 12:25:44 2014 +0100 Slight update to the downloads page to suggest using the latest snapshot '[ci' 'skip].' commit 4a5a035be3891ad7e8bf5b1429213b396483fa48 Author: Alan Garny '' Date: Tue Nov 4 15:00:31 2014 +0100 Solver plugins: slight improvement to their description '[ci' 'skip].' commit 53529da00eb0fb6c3ce7457bfa53312d8675f93a Author: Alan Garny '' Date: Tue Nov 4 14:12:11 2014 +0100 Documentation: some minor cleaning up '[ci' 'skip].' commit 3773fd443c5245aef566b06d0ec53664ec2799c0 Author: Alan Garny '' Date: Thu Oct 30 13:59:16 2014 +0100 QtSingleApplication: updates the copyright information '[ci' 'skip].' commit 8b1c607c20258109d5a6317b204312bbc8dbae04 Author: Alan Garny '' Date: Thu Oct 30 13:58:59 2014 +0100 Some minor cleaning up of various Web addresses '[ci' 'skip].' Among other things, replaced certain instances of qt-project.org with www.qt.io. commit e7cda34c594e82b64c5d769dd756f5cca72341dc Author: Alan Garny '' Date: Wed Oct 29 15:10:16 2014 +0100 Documentation: update some of our screenshots '(closes' '#491)' '[ci' 'skip].' commit e1cf198e3766f9085217501d688dbbcb43151ad7 Author: Alan Garny '' Date: Tue Oct 28 16:41:49 2014 +0100 Slight improvements to the shortcuts for showing/hiding docked windows. commit 60b4c3c01bd00c59a4ded4b2500d3c0c28187284 Author: Alan Garny '' Date: Mon Oct 27 19:52:15 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 941a4725d7517c01eafece6d0391c8de4f51fe94 Author: Alan Garny '' Date: Mon Oct 27 15:58:51 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 840108cf47cef17f54eba949ea9130b947c37f2e Author: Alan Garny '' Date: Mon Oct 27 15:41:48 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e3af42eb5f8c60869eeaae727aeb92decd0ac2ac Author: Alan Garny '' Date: Mon Oct 27 15:22:14 2014 +0100 Documentation: update some of our screenshots '(closes' '#491)' '[ci' 'skip].' commit 01e27007ad0d4f42dc6904425da2d6f8bcd67033 Author: Alan Garny '' Date: Mon Oct 27 13:34:00 2014 +0100 Documentation: slight update to our user documentation '[ci' 'skip].' commit 5446fd15d2e42b56e9cf4ab2244b529bbc730957 Author: Alan Garny '' Date: Mon Oct 27 12:53:58 2014 +0100 Documentation: update some of our screenshots '(closes' '#491).' commit 33ba2848f595ae7663ebd3269645b66dc21d7c04 Author: Alan Garny '' Date: Thu Oct 23 18:19:44 2014 +0200 Documentation: slight updates to our developer documentation '[ci' 'skip].' commit 4dbf1ab6a0bfd02df4fbb148fe4333cd00a4d3dc Author: Alan Garny '' Date: Wed Oct 22 17:45:30 2014 +0200 Slight reorganisation of our file structure. commit 45e8679404cbf842310554c7d23bb97d118e44a7 Author: Alan Garny '' Date: Wed Oct 22 15:32:16 2014 +0200 Downloads pages: slight update to our previous snapshots page '[ci' 'skip].' commit 1174c4baf2ca15861d59d5ee7f8f8dee6f835899 Author: Alan Garny '' Date: Tue Oct 21 19:08:08 2014 +0200 Downloads pages: 'don'\''t' rely on PHP anymore '(closes' '#490)' '[ci' 'skip].' We $'don\342\200\231t' provide the size of the downloads anymore. Instead, if we the script is to be run off the website, then we retrieve the file sizes using a PHP script that we execute from our JavaScript file '(!!).' commit 5c0415f0c924b4dd0b74ada10b3d1fb97adf8c3e Author: Alan Garny '' Date: Tue Oct 21 11:15:04 2014 +0200 Developer documentation: slight update following the release of Xcode 6.1 '[ci' 'skip].' commit c68553471827fbc83e7436d739ed0e0dcc120924 Author: Alan Garny '' Date: Mon Oct 20 19:52:35 2014 +0200 Downloads pages: 'don'\''t' rely on PHP anymore '(closes' '#490)' '[ci' 'skip].' commit 18a74be02e96b188908a04f67b5c31f0efa2c863 Author: Alan Garny '' Date: Mon Oct 20 19:48:03 2014 +0200 Downloads pages: 'don'\''t' rely on PHP anymore '(closes' '#490).' commit e9fc3914b7e31fd0c92f77c7c89722130b94b6e4 Author: Alan Garny '' Date: Sun Oct 19 19:39:46 2014 +0200 Make it optional to package with PackageMaker on OS X '(closes' '#488)' '[ci' 'skip].' commit 0ea47cfa0a93791aa623c1aef0419f75cb59ff88 Author: Alan Garny '' Date: Sun Oct 19 19:15:10 2014 +0200 Make it optional to package with PackageMaker on OS X '(closes' '#488).' commit bf3ee67f1bd14ab98a304c59a31b331e855ddb09 Merge: 46da3c46a dae3684e0 Author: Alan Garny '' Date: Sat Oct 18 15:56:02 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 46da3c46a870a84d9059e2e9ffa536c196449bbf Author: Alan Garny '' Date: Sat Oct 18 15:55:35 2014 +0200 Make it optional to package with NSIS on Windows '(closes' '#487).' commit dae3684e05c34bf903224f73dac6dc51822a7064 Author: Alan Garny '' Date: Fri Oct 17 17:35:12 2014 +0200 Cleaned up some code that ''\''fixed'\''' an issue with the full screen mode on OS X '[ci' 'skip].' This is related to https://bugreports.qt-project.org/browse/QTBUG-30139. Our $'\342\200\230fix\342\200\231' used to work, except that we would get a message that reads something like: 2013-05-17 14:52:25.991 'fullscreen[40864:707]' not in fullscreen state Now, everything seems to be working $'fine\342\200\246' commit 9b476dcd23b4bc2be2bf2092369a4574506f55c6 Author: Alan Garny '' Date: Fri Oct 17 11:33:17 2014 +0200 New snapshots. commit a2612c101b4593c302376d6e8daba6351e3eebff Author: Alan Garny '' Date: Fri Oct 17 11:28:25 2014 +0200 Documentation: some minor cleaning up '[ci' 'skip].' commit 193c896cdcfaf15a88d0b15a733faf51779e38ba Author: Alan Garny '' Date: Fri Oct 17 11:08:16 2014 +0200 Added support for OS X 10.10 '(Yosemite)' '(closes' '#486).' commit b77e4dc902b206127408fab265aa66904d9f337b Author: Alan Garny '' Date: Thu Oct 16 14:22:07 2014 +0200 Documentation: updated the title of the user/developer documentation home pages '[ci' 'skip].' commit 3c2046df3d9ed6d73185befc3ff4156dedb8d9d6 Author: Alan Garny '' Date: Wed Oct 15 16:58:55 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a8815f9ee375c537839917befa6b600487f601c9 Author: Alan Garny '' Date: Wed Oct 15 16:49:54 2014 +0200 OpenCOR logo: updated the image versions of our logo '[ci' 'skip].' commit d91b1c7590b2c53e01b56f3e9b01e85668f9dfa1 Author: Alan Garny '' Date: Wed Oct 15 14:16:04 2014 +0200 OpenCOR logo: some major cleaning up of our SVG file '[ci' 'skip].' commit d538ec6a568be0cce971ba071b732aa406e1253b Author: Alan Garny '' Date: Wed Oct 15 11:16:31 2014 +0200 OpenCOR logo: some minor cleaning up of our SVG file '[ci' 'skip].' commit f075a37f7549bd0c5e2de4f369b4f87e50458bf7 Author: Alan Garny '' Date: Tue Oct 14 19:19:11 2014 +0200 OpenCOR logo: updated the icon version of our logo. commit 327d2b1d849d73f22e6ebdf737ee28287ccb10d3 Author: Alan Garny '' Date: Tue Oct 14 17:34:33 2014 +0200 OpenCOR logo: slightly shifted its contents to the left and made the splash screen image and logo itself transparent. No work on the icon version has been done yet. commit 4f65a1f18c428fd041bcfcc839bfcacc10887e99 Author: Alan Garny '' Date: Tue Oct 14 13:02:27 2014 +0200 Slight update to the developer documentation following the release of Qt Creator 3.2.2 '[ci' 'skip].' commit 8b457908ba4eff8107d221e9770cd767370b14b9 Author: Alan Garny '' Date: Tue Oct 14 10:48:18 2014 +0200 New snapshots. commit 0c16b170dcb5d8ebabd9836c95a2569202d6273e Author: Alan Garny '' Date: Tue Oct 14 10:20:46 2014 +0200 64-bit Windows: have the installer use the correct default installation directory '(closes' '#484).' commit 29e64d1a87906db8988ade13f1c2f1075c9b3acc Author: Alan Garny '' Date: Mon Oct 13 16:52:21 2014 +0200 OpenCOR logo: use the Physiome theme '(closes' '#483)' '[ci' 'skip].' commit 010b63dd1fa28d8d6c158222e847ea94b354ede0 Author: Alan Garny '' Date: Mon Oct 13 16:48:11 2014 +0200 OpenCOR logo: use the Physiome theme '(closes' '#483).' commit 73d2762b5789d694c4100595b5fe1e064a0f5f8b Author: Alan Garny '' Date: Mon Oct 13 16:14:11 2014 +0200 OpenCOR logo: some work towards using the Physiome theme '(#483)' '[ci' 'skip].' commit b210586198f0779f73137cb11f9b4665f9bbc2f4 Author: Alan Garny '' Date: Mon Oct 13 14:33:50 2014 +0200 OpenCOR logo: some work towards using the Physiome theme '(#483)' '[ci' 'skip].' commit d4de42a948507419cb0c3ce28dfe0378b301b344 Author: Alan Garny '' Date: Tue Oct 7 11:24:55 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit e08298ba61076912e7b83bc29d1ed3e5bee2c3d5 Author: Alan Garny '' Date: Fri Oct 3 17:29:52 2014 +0200 Qwt: done upgrading to version 6.1.1 from version 6.1.0 '(closes' '#482).' commit 2cf3e7f9bdb70997ffdaae5ddde3f8ac63cb52d8 Author: Alan Garny '' Date: Fri Oct 3 16:48:49 2014 +0200 Qwt: some work on upgrading to version 6.1.1 from version 6.1.0 '(#482)' '[ci' 'skip].' commit 22c775a9d1042cfc152ec308ccb54b6316c382d7 Author: Alan Garny '' Date: Thu Oct 2 13:39:30 2014 +0200 CellML support: some slight improvements to the CellmlFileRdfTriples class '[ci' 'skip].' '1)' We renamed CellmlFileRdfTriples:: 'contains()' and 'CellmlFileRdfTriples::recursiveContains()' to 'CellmlFileRdfTriples::associatedWith()' and 'CellmlFileRdfTriples::recursiveAssociatedWith(),' respectively. '2)' Some minor improvements to 'CellmlFileRdfTriples::recursiveAssociatedWith().' commit 5558c19a06d1650661dabb0c47048621fcdc29d3 Author: Alan Garny '' Date: Thu Oct 2 13:37:37 2014 +0200 CellML support: keep track of an RDF 'triple'\''s' element value as a string '[ci' 'skip].' We rely a lot on an RDF $'triple\342\200\231s' $'element\342\200\231s' value as a string, so rather than generate that value every time, we keep track of it once and for all. commit 453c83d78f5555836fd4f2f7d222b2eae8a1d215 Author: Alan Garny '' Date: Thu Oct 2 11:34:27 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7ff384a834681b7c329c6c0d89892814942a4a8b Author: Alan Garny '' Date: Thu Oct 2 10:32:29 2014 +0200 Plugins window: slight improvement to the update of the selected state of all our unselectable plugins '[ci' 'skip].' commit ea05ab33d446953dd72992721eb53d38a158e5d7 Author: Alan Garny '' Date: Thu Oct 2 10:29:31 2014 +0200 CellML Annotation view: minor update to the 'plugin'\''s' dependencies '[ci' 'skip].' commit 88e570dcb12cbe992870774f515093114ca3c6bc Author: Alan Garny '' Date: Wed Oct 1 19:01:36 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a7e9df7d197772570ebd9cf2d308a49f4041ad9c Author: Alan Garny '' Date: Wed Oct 1 18:47:50 2014 +0200 New snapshots. commit faafd01ccefa3a039af449b116161f9031e95cab Author: Alan Garny '' Date: Wed Oct 1 18:20:08 2014 +0200 CellML support: some work on improving 'CellmlFile::rdfTriple()' '(#481)' '[ci' 'skip].' commit 08d5f37ca991efb815b13710ecda313d1e01d180 Author: Alan Garny '' Date: Wed Oct 1 16:30:25 2014 +0200 Updated the user documentation '[ci' 'skip].' commit 54eb09a324303348670c092368b78da30434d915 Author: Alan Garny '' Date: Wed Oct 1 16:23:52 2014 +0200 CellML Annotation view: prevent the addition of an ontological term in a read-only file '(closes' '#480).' commit 54e91d49dc1d9d867cc90097d787b2fcb8f23da8 Author: Alan Garny '' Date: Wed Oct 1 15:22:35 2014 +0200 File manager: improved the way it lets people know about a 'file'\''s' permissions having changed '[ci' 'skip].' commit 96ea93a233ca3833375aafb84a54bec3a33c82ce Author: Alan Garny '' Date: Wed Oct 1 14:52:38 2014 +0200 Travis-CI: use CMake 3.0.2 on Linux and 'don'\''t' install CMake from Brew on OS X anymore. commit 6c93832770dc103b894a1801cb61488a33bcbe9b Author: Alan Garny '' Date: Wed Oct 1 14:44:42 2014 +0200 Travis-CI: use CMake 3.0.2 on Linux and 'don'\''t' install CMake from Brew on OS X anymore. Travis-CI now uses version 10.9.5 of OS X and it would seem that they already have CMake 3.0.2 installed. commit 734d21bdb4aeca3c7540bf473579b3d55e24ecb2 Author: Alan Garny '' Date: Wed Oct 1 14:21:11 2014 +0200 Some minor cleaning up. commit 6f358bdc2d75b79250897942900c7e6aba362f9a Author: Alan Garny '' Date: Wed Oct 1 13:19:23 2014 +0200 Qt 5: cleaned up some code as a result of Qt 5 having been updated '(#138)' '[ci' 'skip].' commit 6132f99a0be065e1c1e169cd6b210c1fa5c53a44 Author: Alan Garny '' Date: Tue Sep 30 17:18:17 2014 +0200 Removed some code, which is not at all used '[ci' 'skip].' commit fbf72e2cea97603c84f064474eeea48eb636a6f7 Author: Alan Garny '' Date: Tue Sep 30 16:51:55 2014 +0200 Slight improvement to Core::UserMessageWidget '[ci' 'skip].' commit 91039ee1d0ed2792f3658317d1fc5181bdca0d02 Author: Alan Garny '' Date: Tue Sep 30 14:54:20 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 243600c90d5bbc55bc48750092d0fd8288e6c7c2 Author: Alan Garny '' Date: Tue Sep 30 13:52:12 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c22be7ebb7ca690f68943401e499cfc649b535e7 Author: Alan Garny '' Date: Tue Sep 30 11:47:20 2014 +0200 Removed the different 'Core::newLabel()' methods '(closes' '#479).' commit 16c256c1aabda3c5574581afd811976b7da42a98 Merge: 7f5a4f3c5 4694bc0a8 Author: Alan Garny '' Date: Tue Sep 30 11:09:16 2014 +0200 Merge pull request '#478' from opencor/issue470 CellML Annotation view: list ontological terms using a web page of sorts '(#470).' commit 4694bc0a8c885dc527a739764b673cccf9074f59 Author: Alan Garny '' Date: Tue Sep 30 10:45:40 2014 +0200 CellML Annotation view: done with listing ontological terms using a web view of sorts '(closes' '#470).' commit bc9a0eab9f2f37080ae166cf9f8b1001d2fadac7 Author: Alan Garny '' Date: Tue Sep 30 10:45:06 2014 +0200 Slight updates to our user documentation. commit 2cc947bca979dd436cf6e64b070ccb3083d2c3da Author: Alan Garny '' Date: Mon Sep 29 19:04:02 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts '(#470).' commit bea02e060c0056c32a59aae02a444bd731ecc000 Author: Alan Garny '' Date: Mon Sep 29 17:00:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts '(#470).' commit bed7349ebe52fc938543d65b09fb0589f62d3a27 Author: Alan Garny '' Date: Mon Sep 29 16:03:37 2014 +0200 Some minor cleaning up. commit 699e7e3ffd3d5b8134056464ecd86e39b3ce11eb Author: Alan Garny '' Date: Mon Sep 29 15:59:45 2014 +0200 Some minor cleaning up. commit 9201ad7a5ca6d33104fd684680d0231a367a3fc0 Author: Alan Garny '' Date: Mon Sep 29 15:53:51 2014 +0200 Some minor cleaning up. commit 107837a6ae0656e75c532073c872311981ba2962 Author: Alan Garny '' Date: Mon Sep 29 15:06:49 2014 +0200 CellML Annotation view: some work on listing ontological terms using a web view of sorts '(#470).' commit 78e76ab66c992ad77ede1d6dc14e6a1501f9a033 Author: Alan Garny '' Date: Sun Sep 28 12:12:56 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit b1d28467761ca2411b7ff77a3fe74e0f1f60aeb6 Author: Alan Garny '' Date: Sun Sep 28 11:01:23 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit a468a7c48c88c1a13f9f0809ca07dceba4cceaa8 Author: Alan Garny '' Date: Sat Sep 27 17:46:49 2014 +0200 Added a couple of static functions to CellmlFileRdfTriple. They are 'modelQualifier()' and 'bioQualifier(),' and they can be used to retrieve a 'model/bio(logy)' qualifier from a string. commit cb33f8f3351be78e5c0cb0038721a1b4b32fd0c3 Author: Alan Garny '' Date: Fri Sep 26 15:07:32 2014 +0200 Some minor cleaning up of our CellML support classes. Also added some 'CellMLFile::removeRdfTriple()' methods '(to' make things easier with '#470).' commit b5779da089728173ef5018d785546fe4fe098d54 Author: Alan Garny '' Date: Fri Sep 26 14:17:51 2014 +0200 Some minor cleaning up. commit 4b965a906ab75846a82f24744a6b4400050438cc Author: Alan Garny '' Date: Fri Sep 26 13:13:03 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 8558d52b5e6d4294e644ccdd97f084d7656a4081 Author: Alan Garny '' Date: Thu Sep 25 17:34:49 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 544919a032cdb30e96f6b5d89efc96be143a6596 Author: Alan Garny '' Date: Thu Sep 25 14:20:11 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 5fcdc7de8e68019627919fade8a5ca20612e5085 Author: Alan Garny '' Date: Thu Sep 25 10:42:36 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit cf7a21e1e5ad99200c5f12e3cc3a1a9ac7c9c65d Author: Alan Garny '' Date: Thu Sep 25 10:17:24 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit e9e977154126779d0f61f7f4791b92b8db2c0111 Author: Alan Garny '' Date: Wed Sep 24 17:35:44 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 25c4d8a810b076911beda75ebcd91e0b6cc48626 Author: Alan Garny '' Date: Wed Sep 24 17:24:55 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 3e4617328a8f5416450fdfaa422b114816089d4c Author: Alan Garny '' Date: Wed Sep 24 17:13:58 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 63bc55be637b01c1d9f033102cfd14312dd9646a Author: Alan Garny '' Date: Wed Sep 24 16:11:48 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 73d545f9e94dc8abe6cdc16ecc5b03a2d19f2d44 Author: Alan Garny '' Date: Wed Sep 24 13:23:44 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit b0e47fc2b23b6fe2caa2f8b99dfb5e10c88c6de6 Author: Alan Garny '' Date: Wed Sep 24 11:37:47 2014 +0200 Some minor cleaning up. commit 01c4de95d9af45c4d3e173c178f5a3540a4af194 Author: Alan Garny '' Date: Tue Sep 23 17:51:59 2014 +0200 Slight improvement to Core::UserMessageWidget. commit 5087a9b62e9de0e45ca1eb039b7999f7676e3ac8 Author: Alan Garny '' Date: Tue Sep 23 17:47:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 01d98cfeaec4cdb9c1d789c37d7967355b6dcead Author: Alan Garny '' Date: Tue Sep 23 17:40:22 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit daba92714b3ddf420c656c41721073044a45c07c Author: Alan Garny '' Date: Tue Sep 23 16:30:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit f4e9ade66d12625de9f4b96f8c7ec20f900a14a8 Author: Alan Garny '' Date: Tue Sep 23 16:09:43 2014 +0200 Some minor cleaning up of our CellmlFileRuntime class. commit e874c68873c9f58bbb60237d1413c60c2828be4e Author: Alan Garny '' Date: Tue Sep 23 15:54:16 2014 +0200 Some minor cleaning up of our connection statements. commit 464914066e3db73ee68c8722cb1b9fee15f1e899 Author: Alan Garny '' Date: Tue Sep 23 14:41:57 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit d5577f1eb9fcf76bab6d13d889b3741062fd9a97 Author: Alan Garny '' Date: Tue Sep 23 10:27:10 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 0dfb63c6935ab557e1c3c2281652917a3244954f Author: Alan Garny '' Date: Tue Sep 23 09:19:06 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit be0a506f66765923e8b4ab41884285bc74d5795d Merge: 7e9ccfaee 7f5a4f3c5 Author: Alan Garny '' Date: Mon Sep 22 18:50:11 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470 commit 7e9ccfaeee98b9ca0ca7eb05a5057235fa69ab75 Author: Alan Garny '' Date: Mon Sep 22 18:48:33 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 54cbbe43fe23c467e83a817fde8f4f41e457f862 Author: Alan Garny '' Date: Mon Sep 22 17:08:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 0a45f146b07f2b51a170a6c53f22f813c4fd3f67 Author: Alan Garny '' Date: Mon Sep 22 16:13:45 2014 +0200 Some cleaning up of our main common.css file. commit 7f5a4f3c507599246f441bc318186958ee712696 Author: Alan Garny '' Date: Mon Sep 22 14:43:06 2014 +0200 Qwt and SUNDIALS plugins: updated the binaries '(closes' '#476).' commit f23528522309bed814742459ef9f297363b87ec6 Author: Alan Garny '' Date: Mon Sep 22 11:16:27 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit da2b684f63e45bd47de336a078b08b6b94273ad0 Author: Alan Garny '' Date: Mon Sep 22 10:34:40 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 7daf6836e1a2ba3aa7c16c461142947520044c41 Author: Alan Garny '' Date: Mon Sep 22 10:33:39 2014 +0200 Fixed a regression issue with HTML anchors that 'don'\''t' accept hovering. commit 93f96c85e61d684db88ded50fa0152f21d37f609 Author: Alan Garny '' Date: Mon Sep 22 10:32:53 2014 +0200 Some cleaning up of main common.css file. commit 78cbfffc8825292bbec244349c75dae6cbceec9e Author: Alan Garny '' Date: Mon Sep 22 10:31:47 2014 +0200 Prevent dragging/dropping from our HTML pages. commit 9e9dd00ad9a19e77640a104a7511495e12175f47 Author: Alan Garny '' Date: Mon Sep 22 10:08:37 2014 +0200 Some minor CSS cleaning up. commit 0c2df8801f58530be5b987c185d1dad203283676 Author: Alan Garny '' Date: Sun Sep 21 20:30:12 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit ddb72896c455dc09ac60901242cebbcb32e63cd0 Author: Alan Garny '' Date: Sun Sep 21 19:49:55 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 8de293f4aad9b1bc58cefd8697b4e25fdc4091c1 Author: Alan Garny '' Date: Sun Sep 21 17:31:21 2014 +0200 Improved the translation of our views that display numbers. The idea is to be able to display numbers using digit grouping, this keeping in mind the current locale. commit 56dd0fbbe83f9fc8bc9dd05c31b3600a401081be Author: Alan Garny '' Date: Sun Sep 21 17:06:04 2014 +0200 Added OpenGL to our list of required Qt modules. commit feb182a5fc7a3c66efcb76c9ae302d5d3aa8a71f Author: Alan Garny '' Date: Sun Sep 21 14:58:07 2014 +0200 Improved the digit grouping of numbers by keeping in mind the current locale. commit 691f25fc50840e2efe9765dce435a39de14f8542 Author: Alan Garny '' Date: Sun Sep 21 14:56:32 2014 +0200 Improved the digit grouping of numbers by keeping in mind the current locale. commit c0bba9b3dbe1ae14fc188e3045a0ad0414903bc4 Author: Alan Garny '' Date: Sun Sep 21 12:13:18 2014 +0200 Use digit grouping in 'Core::sizeAsString().' commit 73dc1ad50f14749e6205110680813bf818a1bd5a Author: Alan Garny '' Date: Sun Sep 21 05:12:30 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit a682fd64a06526804812c560c6e5fa00abe79d36 Author: Alan Garny '' Date: Sat Sep 20 20:02:17 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit ba5c3f3075e6a6a8f2735b9efc13b5020d024df3 Author: Alan Garny '' Date: Sat Sep 20 18:00:14 2014 +0200 Refactoring: added a core GUI utility for retrieving the data URI of an icon. commit 066f4f2d94dab29f444e20b461ed1e81b2765d00 Author: Alan Garny '' Date: Sat Sep 20 15:23:19 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit b30fbc08d5d7b5cbf04d503dda04f5a85442f318 Author: Alan Garny '' Date: Sat Sep 20 15:20:37 2014 +0200 Refactoring: added a core CLI utility for doing digit grouping. commit ac6c098bb3a75ceebbbd0396b8e9bcc1eb9fe9ae Author: Alan Garny '' Date: Sat Sep 20 03:02:56 2014 +0200 Minor GUI clean up in CellmlAnnotationViewMetadataDetailsWidget. commit c83be375bc290a09bfa8f1c76b9a854aed2730de Author: Alan Garny '' Date: Sat Sep 20 02:58:56 2014 +0200 Improved the rendering of an icon in Core::UserMessageWidget. commit 22d6abeb7386d4c510adec927b96616b4a2bb510 Author: Alan Garny '' Date: Sat Sep 20 01:40:59 2014 +0200 Slight reworking of our 'Core::formatErrorMessage()' function. commit d4b028a73aa5dd7e05eda1bc082b34ee9cad3e27 Author: Alan Garny '' Date: Sat Sep 20 01:32:43 2014 +0200 Some minor cleaning up. commit 6af3bafdb6ad8ea74ab74f1cfe0bfe4d1e34e6fd Author: Alan Garny '' Date: Sat Sep 20 01:09:30 2014 +0200 Some minor improvement to our HTML/CSS resources/files. commit 2ab7f1f70b325c07f634a4c8cc74dd64f04b90c5 Author: Alan Garny '' Date: Sat Sep 20 00:55:25 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit ce0b37a4e4643bb18efabbbe81cdb9b237c0ec88 Author: Alan Garny '' Date: Sat Sep 20 00:55:01 2014 +0200 CellML Model Repository window: some minor cleaning up of the HTML/CSS resource. commit 10953309b0e181951eafd40740f22abc09394a22 Author: Alan Garny '' Date: Sat Sep 20 00:51:22 2014 +0200 Some minor cleaning up of some HTML/CSS resources. commit e8a6b8de19a45d393aec27bf774c61d599ee875d Author: Alan Garny '' Date: Sat Sep 20 00:14:15 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 0bc0302002e4ae1cb6cc8c147417718eccd562d2 Author: Alan Garny '' Date: Sat Sep 20 00:01:38 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 7be8a25a4a0c9dfef8ed33da86fb67d7ceb4a286 Author: Alan Garny '' Date: Fri Sep 19 20:10:07 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 3efaf24da3f8fe2a9bdfce336a1e6f13c20a8ca4 Author: Alan Garny '' Date: Fri Sep 19 19:26:46 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit b2c10e612e0b4c392215a33f6a9bd6e993df00e9 Author: Alan Garny '' Date: Fri Sep 19 18:22:06 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit 277d2bb5f8dc5508bfb4ece25e1d631f8b9ddb54 Author: Alan Garny '' Date: Fri Sep 19 17:38:22 2014 +0200 Some minor cleaning up of some user messages. commit d643c557f675bb9dd57cfc96a9c835e8dd0354b8 Author: Alan Garny '' Date: Fri Sep 19 17:20:01 2014 +0200 Some minor cleaning up with regards to Core::UserMessageWidget. commit ffb7de2077614bbf44f2ee2a31df0f4f3bea8687 Author: Alan Garny '' Date: Fri Sep 19 16:05:26 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit ac44f592a4ff1f7da00a835eeb846b8f60b30f51 Author: Alan Garny '' Date: Fri Sep 19 15:21:01 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit 0e585484fa4cb10b9c0c8825e112c2e1d520947b Author: Alan Garny '' Date: Fri Sep 19 15:20:34 2014 +0200 Some minor cleaning up. commit 084ef455cce56313f80c0d96b9d4c9ecdc51ce77 Author: Alan Garny '' Date: Fri Sep 19 14:40:29 2014 +0200 Some minor cleaning up of Core::UserMessageWidget. commit b946b5e373bfa98a922e210a1fd99c0bda08e762 Author: Alan Garny '' Date: Fri Sep 19 14:18:10 2014 +0200 CellML Annotation view: now use Core::UserMessageWidget to display user messages in CellmlAnnotationViewMetadataEditDetailsWidget '(closes' '#474).' commit 95ef480088d998b232babee867427d06b86a61ae Author: Alan Garny '' Date: Fri Sep 19 14:17:12 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit bd095594f03bdff601c002c3d974766e8ef267b6 Author: Alan Garny '' Date: Fri Sep 19 11:32:34 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 9d56d36d69bd23805d0841c34e696f7206fd74e0 Merge: 39fccdc48 14a9f6b2c Author: Alan Garny '' Date: Fri Sep 19 10:39:07 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470 commit 14a9f6b2c5991f557a9753d63d528adb5134c8c4 Author: Alan Garny '' Date: Fri Sep 19 10:38:54 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 39fccdc4877bb66cd8bd5d4100bc9e9b902d9e8e Merge: 0b6f7f9fb 53405c263 Author: Alan Garny '' Date: Fri Sep 19 09:59:54 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470 commit 53405c263b1ca7f1bfe27efa0bf1375e2d9ce83c Author: Alan Garny '' Date: Fri Sep 19 09:59:23 2014 +0200 CellML Model Repository window: make better use of the space when listing the models '(closes' '#473).' commit 73b417b33e683a6563f844726e3e096f498d9c71 Author: Alan Garny '' Date: Fri Sep 19 09:17:01 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0b6f7f9fb50522bba146b56a20d07f6f00f08faa Merge: 8bd64d7e0 cc8e2d3b9 Author: Alan Garny '' Date: Fri Sep 19 09:09:52 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470 commit cc8e2d3b921ade8bbd36232cccd074daf94dc8dc Author: Alan Garny '' Date: Fri Sep 19 09:09:36 2014 +0200 Doc: updated the developer documentation '[ci' 'skip].' This is as a result of Xcode 6.0.1 having been released. commit 8bd64d7e0a5598949af427792c247eec886e433d Author: Alan Garny '' Date: Thu Sep 18 20:14:37 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 84940b3532db827f8928a3f0ea16d2a0539edc41 Author: Alan Garny '' Date: Thu Sep 18 17:26:36 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 0577a74bc85ae2f8f3215b2e196587823362ee87 Author: Alan Garny '' Date: Thu Sep 18 15:32:05 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit ed2b9640c229e64e3e31ba70e9df435eb675e297 Merge: 1db809f24 15ec6ab1d Author: Alan Garny '' Date: Thu Sep 18 15:07:04 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470. commit 15ec6ab1dc5b1dd951eb810609e91c62e1dea781 Author: Alan Garny '' Date: Thu Sep 18 15:03:46 2014 +0200 CellML Annotation view: improved detection of direct terms '(closes' '#472).' commit 1db809f248c637477b9f178da4467cebb3f7e12c Author: Alan Garny '' Date: Thu Sep 18 14:50:28 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 08614b2b520110c8b67e8549912122ee14552454 Author: Alan Garny '' Date: Thu Sep 18 13:49:06 2014 +0200 Merge remote-tracking branch ''\''origin/master'\''' into issue470. commit c6f8901d3ace6ccab5a2ff35fe96c3573bb9de15 Author: Alan Garny '' Date: Thu Sep 18 13:33:42 2014 +0200 CellML Annotation view: fixed an issue only the active file having its view retranslated '(closes' '#471).' commit e8d3dd7581124e9bd64334b6d81c791905361856 Author: Alan Garny '' Date: Thu Sep 18 13:16:30 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit feb714c1eb9843bc5b864f2d077de86f487cf2a2 Author: Alan Garny '' Date: Thu Sep 18 11:45:13 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit c910456a0ff7fa699c950017ea990fe10947e102 Author: Alan Garny '' Date: Thu Sep 18 10:26:04 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 3408fd619b3faf1b8769a7a7aa1c594b447d9ade Author: Alan Garny '' Date: Wed Sep 17 19:27:09 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit c28a4581a42270013161cb122e52d202777d692a Author: Alan Garny '' Date: Wed Sep 17 17:33:51 2014 +0200 CellML Annotation view: some work on listing ontological terms using a tree view of sorts '(#470).' commit 08c1f073c42a14f357a20c013f86ddb7e24b802c Author: Alan Garny '' Date: Wed Sep 17 13:57:34 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1eaae7277a0a44297b7fd1bdb22fd458f7a559d4 Author: Alan Garny '' Date: Wed Sep 17 11:36:52 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit cb9ae2bb5c83e6d5b8ce7da41dcffcbf4b2bda3b Author: Alan Garny '' Date: Wed Sep 17 11:28:07 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 739ebc5e8718215110c135a17e9995a6557e9408 Author: Alan Garny '' Date: Wed Sep 17 11:05:08 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f5a5f62738234e6c8c1f20951ab67f4c0c322aa9 Author: Alan Garny '' Date: Tue Sep 16 18:24:42 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f71a5baeca8472d361f2bc907fd4f829141ca6ee Author: Alan Garny '' Date: Tue Sep 16 16:04:49 2014 +0200 Slight update to our Travis-CI script following our upgrade to Qt 5.3.2 '(#468).' commit 18e2d8a2592ee74d9cd1cd759232c2a28713a474 Author: Alan Garny '' Date: Tue Sep 16 15:59:06 2014 +0200 Qt 5: indirectly fixed an issue with moving a QWebView-based dockable window eventually crashing OpenCOR '(closes' '#383).' This is the indirect result of upgrading Qt from version 5.3.1 to version 5.3.2 '(see' issue '#468).' commit 53f78771c57be6d777624781180a1caa2afe0997 Author: Alan Garny '' Date: Tue Sep 16 15:52:23 2014 +0200 Qt: upgraded from version 5.3.1 to version 5.3.2 '(closes' '#468).' This also closes issue '#383' as a result. commit 3bf87563223c7bfcf5b3370651c547805fb12e23 Author: Alan Garny '' Date: Tue Sep 16 13:48:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0aee5aacf84a0e06fe815e5db6e22dab6fcd9c86 Author: Alan Garny '' Date: Tue Sep 16 13:16:27 2014 +0200 CellML Annotation view: improved the retrieval of possible ontological terms '(closes' '#463).' commit 0e8e17263c274ac79479f88f55addc4f5fce863b Author: Alan Garny '' Date: Tue Sep 16 13:14:14 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8face7c5420f8b042645dee446739f68d320c1ce Author: Alan Garny '' Date: Mon Sep 15 16:15:53 2014 +0200 Core::BusyWidget: added support for showing the progress of a task '(closes' '#467).' Also some various cleaning ups of Core::BusyWidget. commit 147b6ae46d92557177751d30735b241dd63499a8 Author: Alan Garny '' Date: Mon Sep 15 13:29:04 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5b676a56933202ca46577d83e4367f473c9f5011 Author: Alan Garny '' Date: Mon Sep 15 13:26:33 2014 +0200 Renamed Core::SpinnerWidget to Core::BusyWidget '(closes' '#466).' commit 6bd896c97a9e0a2cde67f3846eb66ee643d2094d Author: Alan Garny '' Date: Sat Sep 13 22:40:57 2014 +0200 Slight improvement to our CMake 'INITIALISE_PROJECT()' macro '[ci' 'skip].' commit 3d5a501f87c00709b7fcb8774b9c9333b61fc9ce Author: Alan Garny '' Date: Sat Sep 13 21:44:38 2014 +0200 Done upgrading QScintilla to version 2.8.4 '(closes' '#464).' commit 6cdd99524327e5c681d567a1680da192e49cd5e3 Author: Alan Garny '' Date: Sat Sep 13 21:01:09 2014 +0200 Started work on upgrading QScintilla to version 2.8.4 '(#464)' '[ci' 'trip].' commit dd3e160cc3a5ca97f120dbaabad7bbc80428231d Author: Alan Garny '' Date: Thu Sep 11 14:54:07 2014 +0200 User documentation: slight updates to the HelpWindow plugin documentation '[ci' 'skip].' commit 011582acc39ec9b8730578195cbcc3add1f915d2 Author: Alan Garny '' Date: Thu Sep 11 14:41:22 2014 +0200 User documentation: slight updates to the HelpWindow plugin documentation '[ci' 'skip].' commit e4d88c1af192d5556d2d84f782d2adc2265dfc1f Author: Alan Garny '' Date: Tue Sep 9 22:54:31 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c7e11ebef3351910f9a5db7332a1778ffde52932 Author: Alan Garny '' Date: Mon Sep 8 13:52:59 2014 +0200 Single Cell view: got the simulation delay to work again '(closes' '#461).' commit 88565cbecd75e5a7b99aa422b39fde4ae7d8d9d1 Author: Alan Garny '' Date: Sun Sep 7 15:22:00 2014 +0200 New snapshots. commit 50527cd45aad15dbc85b5989a2990fe7befde6fd Author: Alan Garny '' Date: Sun Sep 7 15:07:43 2014 +0200 Central widget: now use a spinner when switching to a remote file or views for a remote file '(closes' '#456).' commit 9a5b04d5beb47edb48a2d2a515e7df48433ae47e Author: Alan Garny '' Date: Sun Sep 7 13:53:44 2014 +0200 Central widget: some work on using a spinner when switching to a remote file or views for a remote file '(#456)' '[ci' 'skip].' commit 21f4d8f562e3d87ec24d47f64198c1f0279be774 Author: Alan Garny '' Date: Sun Sep 7 13:48:11 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a618440a07d48595909c8eefb776f3ec9decdfb3 Author: Alan Garny '' Date: Sat Sep 6 20:16:40 2014 +0200 Help window: changed its title from '"OpenCOR' 'Help"' to '"Help"' '[ci' 'skip].' commit be1c8fac84d25b163820d3da8c2688094f691de5 Author: Alan Garny '' Date: Sat Sep 6 19:39:16 2014 +0200 Some updates to the user and developer documentations '[ci' 'skip].' commit f439b1dacfcc7e75215e29ed52cb406acc2e8a1e Author: Alan Garny '' Date: Sat Sep 6 19:30:40 2014 +0200 Done upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(closes' '#460).' commit aa4981adf94813f95654f483379a901351075106 Author: Alan Garny '' Date: Sat Sep 6 16:44:57 2014 +0200 Some work on upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(#460)' '[ci' 'skip].' commit bff8461ec51ab3f96514e5118377b8f485aaa5f1 Author: Alan Garny '' Date: Sat Sep 6 13:45:56 2014 +0200 Some work on upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(#460)' '[ci' 'skip].' commit dd9e288dc8e59ae78d943eff81eeadee2e0b27b0 Author: Alan Garny '' Date: Sat Sep 6 12:09:21 2014 +0200 Some work on upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(#460)' '[ci' 'skip].' commit e64cf71811a3c771634bb5d6cde94d68bd1358ab Author: Alan Garny '' Date: Sat Sep 6 12:04:52 2014 +0200 Some work on upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(#460)' '[ci' 'skip].' commit d3c68fa3b3f736abcfd3e3d8850441e6099eb589 Author: Alan Garny '' Date: Sat Sep 6 11:09:34 2014 +0200 Some work on upgrading LLVM '(incl.' 'Clang)' from version 3.4.2 to version 3.5 '(#460)' '[ci' 'skip].' commit 42a9db32449c65b63cefd094c352d81cb63bad02 Author: Alan Garny '' Date: Fri Sep 5 17:21:06 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c8b2637f87b095c1f3c5c07ca36e2cd20222420f Author: Alan Garny '' Date: Thu Sep 4 19:11:13 2014 +0200 CellML Annotation view: now use a spinner when retrieving possible ontological terms '(closes' '#455)' '[ci' 'skip].' commit a3085cdfd5a4a6658cd703cd44a73f376ad93618 Author: Alan Garny '' Date: Thu Sep 4 19:09:57 2014 +0200 CellML Annotation view: now use a spinner when retrieving possible ontological terms '(closes' '#455).' commit 3d5368a9fd9f97829a625590ba3d6e67a63a1167 Author: Alan Garny '' Date: Thu Sep 4 19:03:13 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a1602fb964747044e4268855f90b728261170201 Author: Alan Garny '' Date: Thu Sep 4 18:56:45 2014 +0200 CellML Annotation view: some work towards using a spinner when retrieving possible ontological terms '(#455)' '[ci' 'skip].' commit 1d4e36ccc688d716f2137c0ce204fe9bd066cfd2 Author: Alan Garny '' Date: Thu Sep 4 18:17:47 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c14286c0a6d94b9300380944a33397d93f525779 Author: Alan Garny '' Date: Thu Sep 4 17:46:41 2014 +0200 CellML Annotation view: some work towards using a spinner when retrieving possible ontological terms '(#455)' '[ci' 'skip].' commit 243c2b81a45d31155ffad3d4443b2be8de418973 Author: Alan Garny '' Date: Thu Sep 4 16:32:48 2014 +0200 Single Cell view: show a spinner widget when exporting some simulation data '(since' it may take 'time)' '(closes' '#454)' '[ci' 'skip].' commit ca2fd1696b7cd21162874bd3e50a9194370f8d5d Author: Alan Garny '' Date: Thu Sep 4 16:28:38 2014 +0200 Single Cell view: show a spinner widget when exporting some simulation data '(since' it may take 'time)' '(closes' '#454).' commit 6aef292a619d6b9d29d0a9037a0202f179616b7a Author: Alan Garny '' Date: Thu Sep 4 16:20:35 2014 +0200 CSV Data Store: it 'doesn'\''t' ''\''block'\''' the main thread anymore when exporting a lot of data '(closes' '#459).' commit c228f664ff5014cae9071a238f69e9b6f875451b Author: Alan Garny '' Date: Thu Sep 4 15:00:36 2014 +0200 Some reworking of our spinner support widget '[ci' 'skip].' It now only has a spinner widget when really necessary, i.e. when one needs to be shown. commit 31fa5b5154fbd563f3374f18805ab64dedef2777 Author: Alan Garny '' Date: Thu Sep 4 14:34:56 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit ecb3e7b6f32749518402a0240ae631062d36032b Author: Alan Garny '' Date: Thu Sep 4 11:25:06 2014 +0200 Travis-CI: build using one core only. Until now, we were using half of the cores available on a Travis-CI build machine, but this resulted in regular g++ crashes on 64-bit Ubuntu. So, now, $'it\342\200\231s' going to take longer to build, but at least it should be $'fine\342\200\246' commit c7f4f892f2b6034433687783224f8292981b6665 Author: Alan Garny '' Date: Thu Sep 4 11:04:01 2014 +0200 CellML Annotation view: allow all variables to be exposed, not only ''\''defined'\''' ones '(closes' '458).' commit ae28384ef5c073c1c0b15bbed29d347f214eb832 Author: Alan Garny '' Date: Wed Sep 3 17:47:44 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 431ebe8145b01867cd3dac88ddec1e71167f6631 Author: Alan Garny '' Date: Wed Sep 3 16:15:42 2014 +0200 We now have a spinner widget in our ''\''core'\''' view and window widget classes '[ci' 'skip].' commit 7c952007fa93fbd2312cdfde5fcb12ef4c1ae50b Author: Alan Garny '' Date: Wed Sep 3 15:51:26 2014 +0200 Renamed the Core::DockWidget class to Core::WindowWidget. commit 602a73b4b6ab5d275b2d134cbf33fd1c9c10a9b3 Author: Alan Garny '' Date: Wed Sep 3 15:44:41 2014 +0200 Added a spinner widget to our window widget '(#452)' '[ci' 'skip].' commit 7886829dfdc3af67ecc9fd7679622e7d7cde689f Author: Alan Garny '' Date: Wed Sep 3 15:43:19 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f741f6a6d479f939cf34ec723facce9e47779ebd Author: Alan Garny '' Date: Wed Sep 3 15:19:03 2014 +0200 Moved the Spinner widget to the Core plugin. Indeed, anything that is needed by something from the Core plugin really ought to be in the Core plugin since the Core plugin $'shouldn\342\200\231t' have any dependency whatsoever. commit b802d4ce099116440f779f5a595f98d63ef4f675 Author: Alan Garny '' Date: Wed Sep 3 14:51:43 2014 +0200 Renamed the Core::DockWidget class to Core::WindowWidget. commit d934d3eaa6de07da5e3f88cd32bd72b7bb783183 Author: Alan Garny '' Date: Wed Sep 3 11:22:21 2014 +0200 Renamed the 'DataStoreVariable'\''s' ''\''name'\''' property to ''\''label'\''.' commit 360e5a646bf5ccbeb07016c601cca93dad5a1865 Author: Alan Garny '' Date: Tue Sep 2 19:41:58 2014 +0200 Done making it possible to build both the 32-bit and 64-bit versions of OpenCOR on the same 64-bit Windows machine '[ci' 'skip].' commit cf8e2f4167525fe0b5166fd0e7a8e380b62b8fef Author: Alan Garny '' Date: Tue Sep 2 19:41:28 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 02ce9d0c690487eadb1782d9040672d3040a5412 Author: Alan Garny '' Date: Tue Sep 2 18:24:56 2014 +0200 Some work on making it possible to build both the 32-bit and 64-bit versions of OpenCOR on the same 64-bit Windows machine '[ci' 'skip].' commit d321e154fa9600d502dc5af812569f5046b05f8f Author: Alan Garny '' Date: Tue Sep 2 18:18:18 2014 +0200 Some cleaning up in our batch scripts '[ci' 'skip].' commit c3d50548a6ee653395d26c0887b000b0ef4a0a45 Author: Alan Garny '' Date: Mon Sep 1 18:18:30 2014 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 02b319bd11b29bcae0ebe2d215cd7da95d943384 Author: Alan Garny '' Date: Mon Sep 1 17:06:25 2014 +0200 Slight update to the Windows distribution README.txt file '[ci' 'skip].' commit 60a522a1cec24a522acfc248efa7d59d26b5fdea Merge: 9774b6e2d 897c1f48f Author: Alan Garny '' Date: Mon Sep 1 11:26:09 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 9774b6e2d0dc23da42e7104d2e35191ec5eea3ad Author: Alan Garny '' Date: Mon Sep 1 11:25:53 2014 +0200 CSV Data Store plugin: prevent people from un/selecting it '[ci' 'skip].' This will remain the case until we have implemented issue '#451.' commit 897c1f48fb50b10ea70904799c5459d3aeaf50d3 Merge: ebb95e096 1acc8275a Author: Alan Garny '' Date: Sun Aug 31 14:05:18 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ebb95e096c3fefe53ec7f2b7727fc14349140a2c Author: Alan Garny '' Date: Sun Aug 31 14:04:21 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1acc8275a94eb0ab6312559e5dc3db51015fa800 Author: Alan Garny '' Date: Sun Aug 31 03:52:13 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 4e72583477c01e1e520b80dbb93a3a5949102a93 Author: Alan Garny '' Date: Sun Aug 31 03:32:31 2014 +0200 Now build OpenCOR using MSVC 2013, which is the only version of MSVC that is supported by Qt for both 32-bit and 64-bit Windows. As a result, we are now able to build both 32-bit and 64-bit versions of OpenCOR '(closes' '#35).' commit 585e5222bb1ad8048bbe8ce3d753ec78b979f0b7 Author: Alan Garny '' Date: Fri Aug 29 17:13:50 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 794008f7c76c87b0e8ce5fdd95916043ea9ee9e2 Author: Alan Garny '' Date: Fri Aug 29 14:22:24 2014 +0200 CellML Model Repository window: retrieve the list of CellML files only the first time the window is shown '(closes' '#457).' commit 55df8e1704761bd21d5470982ac872f31757a271 Author: Alan Garny '' Date: Fri Aug 29 09:55:41 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 26c2c37e00d66b1c395192ad522c10c8f12b3d4b Author: Alan Garny '' Date: Thu Aug 28 18:12:06 2014 +0200 Added a .gitattributes file '(closes' '#453).' commit 3a07b4e44a118f4b5680b30461cf79c7ae5d6b34 Author: Alan Garny '' Date: Thu Aug 28 17:47:37 2014 +0200 Now remove '.ninja*' files when cleaning '[ci' 'skip].' commit 0d7be26449c0455ed72e797fa507889b1f551c9e Author: Alan Garny '' Date: Thu Aug 28 17:35:04 2014 +0200 CellML Model Repository window: now use the spinner to indicate that the list of CellML files is being retrieved '(closes' '#452)' '[ci' 'skip].' commit 43f3173e65b7879d276f0e911ea292433b441bae Author: Alan Garny '' Date: Thu Aug 28 17:26:41 2014 +0200 CellML Model Repository window: now use the spinner to indicate that the list of CellML files is being retrieved '(closes' '#452).' commit 1d00c206782fa54409fa47dc2b3d7dfad6982cda Author: Alan Garny '' Date: Thu Aug 28 17:22:10 2014 +0200 Done creating a spinner widget '(closes' '#448)' '[ci' 'skip].' commit 991648a45cdd996955bab402d6f18502cbc671cb Author: Alan Garny '' Date: Thu Aug 28 17:17:30 2014 +0200 Done creating a spinner widget '(closes' '#448).' commit c4a0d62ffe72cd66f08a746061c480e29a9a2738 Author: Alan Garny '' Date: Wed Aug 27 18:44:07 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 42bb7c5014831140b790daf576f9d77c72de00ac Author: Alan Garny '' Date: Wed Aug 27 17:39:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 23a45743e5d0a7130ce654adccd850ee02589568 Author: Alan Garny '' Date: Wed Aug 27 17:23:33 2014 +0200 Fixed a small issue with our Plugin class '[ci' 'skip].' Its 'statusErrorsCount()' method was returning 1 when there were actually no errors. commit e7679e1a40f07ec9443032792e75a6e998ef8b29 Author: Alan Garny '' Date: Wed Aug 27 16:37:14 2014 +0200 Travis-CI: upgraded the version of CMake on Ubuntu and asked for the sample plugins to be built too. commit e7e1ee2b29ad3405b70aa17262370054d3b097cf Author: Alan Garny '' Date: Wed Aug 27 16:29:52 2014 +0200 Travis-CI: upgraded the version of CMake on Ubuntu and asked for the sample plugins to be built too. commit 0942e5a25099c0795c071267145606c0b9dc9778 Author: Alan Garny '' Date: Wed Aug 27 16:08:41 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit bb99c0087b36cb3842615a9271738c0b4bb39bb6 Author: Alan Garny '' Date: Wed Aug 27 15:45:26 2014 +0200 Some work on creating a spinner widget '(#448)' '[ci' 'skip].' commit fdfdd8c67b09f3331ca784118126125c59f2d92d Author: Alan Garny '' Date: Wed Aug 27 14:33:28 2014 +0200 Minor fix our Editor widget '[ci' 'skip].' It was related to the width of the icons for the find widget. commit 4a50c7a78792fb3fdc8ae60a183e64ae355ca194 Author: Alan Garny '' Date: Wed Aug 27 11:31:52 2014 +0200 Some minor updates to third-party libraries page of the developer documentation '[ci' 'skip].' commit d48f65336beb7f8e1d3435e8a65ee23286a53660 Author: Alan Garny '' Date: Tue Aug 26 18:56:42 2014 +0200 Updated the user documentation following the merging of pull request '#445' '(closes' '#450).' commit f54723b44b7f35856c9332d836c006c5a3958f84 Author: Alan Garny '' Date: Tue Aug 26 18:44:10 2014 +0200 Some minor cleaning up of our plugins window code '[ci' 'skip].' commit 2c7305d94920dcffc75d9ed95852093302eba9d5 Author: Alan Garny '' Date: Tue Aug 26 18:29:12 2014 +0200 Some minor cleaning up related to our new data store code '[ci' 'skip].' commit d3386ba25873841d5fb45d9fa1efd8571ce08ef9 Author: Alan Garny '' Date: Tue Aug 26 17:46:36 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 907b87db4af45df0ad26a21ccc4b0f4ccfc7f35d Author: Alan Garny '' Date: Tue Aug 26 17:22:46 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 1bbffc2e857aaf2316c5d18cb981683b2f57b69d Author: Alan Garny '' Date: Tue Aug 26 16:00:20 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 849b544767e9e389cc79468163e3d9cb456ae6cd Author: Alan Garny '' Date: Tue Aug 26 15:28:59 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 21b4e55be5bb309a4db33ebcb496e7a8c146dfbd Author: Alan Garny '' Date: Tue Aug 26 15:26:41 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8fb2ffc56dd29aab1cb6dc1544e01c3c71f9ccab Author: Alan Garny '' Date: Tue Aug 26 14:51:30 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit ee0b4557e7c05319666885c26c75f1205c4c11a5 Author: Alan Garny '' Date: Tue Aug 26 13:52:59 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 52bc7077fc4866e46a0132ecb2f033553795d1e6 Author: Alan Garny '' Date: Tue Aug 26 10:39:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f21c20602e1ed698af65fecc581b2a63adde1fe Author: Alan Garny '' Date: Tue Aug 26 10:12:33 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 6a0c1741f58fd067b0114261eda2fb06fc688e9d Merge: 75704fdf7 3ec1b6350 Author: Alan Garny '' Date: Tue Aug 26 10:10:00 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 75704fdf727217ba2583cd7a44a4693e69e48501 Author: Alan Garny '' Date: Tue Aug 26 10:09:00 2014 +0200 Slight update to the 'team'\''s' page '[ci' 'skip].' commit 3ec1b63505380aef450df8494c5b2fab888d320a Author: Alan Garny '' Date: Mon Aug 25 20:24:21 2014 +0200 CSS-related update to our documentation '[ci' 'skip].' commit f956062455d59a270c6485f175bc150e7d320030 Author: Alan Garny '' Date: Mon Aug 25 18:46:48 2014 +0200 Re-included QVector in cellmlfilerdftriple.h '[ci' 'skip].' Indeed, without it, we get various warning messages between QList and QVector on Windows. commit b5b037748607d1ed83c0c11be7684950a23f1f2d Author: Alan Garny '' Date: Mon Aug 25 18:36:18 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 2fdd6e8143701a7e92e8521559962b7069a74a16 Author: Alan Garny '' Date: Mon Aug 25 18:10:17 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 55adfa7d354eec6428cd85164844e35076ba495e Author: Alan Garny '' Date: Mon Aug 25 17:44:33 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 09fbbeb94adffd33de0a098baa593e768e86d305 Author: Alan Garny '' Date: Mon Aug 25 17:43:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7862a7087a5c6b1ead53b553d2c3bfb06b233419 Author: Alan Garny '' Date: Mon Aug 25 16:52:01 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 1dc8a9da72034225ba90d5f416b03c68f24f6e57 Author: Alan Garny '' Date: Mon Aug 25 15:18:38 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit 9737a963e483dacfd7a52077fc7a04ef6887a41d Author: Alan Garny '' Date: Mon Aug 25 15:04:11 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit d1213091743c85d4bc2895f20b410674f94747e1 Author: Alan Garny '' Date: Mon Aug 25 14:36:29 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit b14d53796d7b5fb588479b095fa867e55099d57b Author: Alan Garny '' Date: Mon Aug 25 14:10:40 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit a38d28e5ac0bcc86beaf232c3410bac005a5ab89 Author: Alan Garny '' Date: Mon Aug 25 13:52:23 2014 +0200 Some work towards making the code of pull request '#445' more OpenCOR like '(#449).' commit b6b16e0bd42be59b3b78c2112d00175fa75001aa Author: Alan Garny '' Date: Mon Aug 25 13:42:59 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit dfde2940b890c82a8a310cb96364665161868bff Author: Alan Garny '' Date: Mon Aug 25 13:04:21 2014 +0200 CSS-related updates to both our developer and user documentation '[ci' 'skip].' commit 688d9bbed0e090f772b94e424c79b02fbf4d5798 Author: Alan Garny '' Date: Fri Aug 22 16:29:15 2014 +0200 Updated the user and developer documentations '[ci' 'skip].' commit fd03f1256ef34e968d6955e3566ac3009596bf1b Author: Alan Garny '' Date: Fri Aug 22 15:41:31 2014 +0200 Pull request '#445' can now build fine on Windows '(closes' '#447).' commit 54bdc519ccda43bda404ae9c456291b6c7f1b6d9 Author: Alan Garny '' Date: Fri Aug 22 15:19:31 2014 +0200 Updated the user and developer documentations '[ci' 'skip].' commit 941f255421ca00e2b0aa53a57988f12eccfe0c40 Author: Alan Garny '' Date: Fri Aug 22 14:35:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 97caf52cb42666ca84babd128e594b628fd849e4 Merge: 4f1273567 d42522657 Author: Alan Garny '' Date: Fri Aug 22 13:08:57 2014 +0200 Merge pull request '#445' from dbrnz/datastore Datastore plugin commit d425226578fb5f148f7d0ea41c3d1933ba7bf0e1 Author: David Brooks '' Date: Fri Aug 22 15:08:57 2014 +1200 The CsvStore plugin depends upon CoreData, so change 'it'\''s' position in the global CMakeLists.txt. commit fc196f6a3271970019781eeb69cec9891b035d2e Author: David Brooks '' Date: Fri Aug 22 15:00:56 2014 +1200 Memory for all of a 'DataSet'\''s' variables is managed within the class. commit de9c739b37bf8f1bd957d63fe5beabae5f044aaf Author: David Brooks '' Date: Tue Aug 12 16:48:08 2014 +1200 GCC complains if we assert an unsigned quantity is '>=' zero. commit 8d30c8095fae07db584352b234784b7e0295043d Author: David Brooks '' Date: Thu Aug 7 16:17:46 2014 +1200 Data storage implementation code can be moved out of the header file without impacting performance. commit 626b3fdd3661350a36e561794f2ce4439cb7ccb2 Author: David Brooks '' Date: Fri Jul 25 15:41:41 2014 +1200 Header 'doesn'\''t' have QObjects so remove from MOC list. commit 2b7cbc54f7452770d6b97d91886cabbc01019348 Author: David Brooks '' Date: Fri Jul 25 15:40:55 2014 +1200 A 'dataset'\''s' variables no longer include the VOI. commit 0bdea775a7e78518901caea593501ede5929a8a7 Author: David Brooks '' Date: Fri Jul 25 15:37:22 2014 +1200 Tweaks to CoreData store. commit 881ab7192bdc045cc1955685ee9152e5d995a026 Author: David Brooks '' Date: Tue Jul 1 22:50:37 2014 +1200 CSV export of a DataSet is now in its own plugin. commit f87c9e3d44215cef96c7233da0c3f0e5f96b5684 Author: David Brooks '' Date: Tue Jul 1 22:47:07 2014 +1200 Rename '`DataVariable::data()`' to '`DataVariable::getData()`' for consistency. commit 4c95f76a25aa186e5d673c1b6cf1d4f7a3d9fab7 Author: David Brooks '' Date: Tue Jul 1 22:46:07 2014 +1200 Define more getter methods for DataSet and DataVariable. commit 3e1e3821eed2bce265a95367da9523dce73aac1e Author: David Brooks '' Date: Tue Jul 1 22:43:53 2014 +1200 Returning '`const' 'QString`' means we 'can'\''t' use '`replace()`' directly on the result... commit 2f77eb9d79994543567688aef001886c55ae50bc Author: David Brooks '' Date: Tue Jul 1 21:57:40 2014 +1200 Fix spelling. commit 2e6c909b08321ad5b13113ebb4c6095177a4bf71 Author: David Brooks '' Date: Tue Jul 1 21:50:02 2014 +1200 Rename '`CoreDatastore`' plugin to '`CoreData`.' commit 35b0241ee49bc5e051cb616a6262e592e1dcc7c0 Author: David Brooks '' Date: Tue Jul 1 21:33:15 2014 +1200 Track which of a 'DataSet'\''s' variables is tracking the variable-of-integration. commit 5f3d3d1eea2dbebc55e42a9c6f8938a95a25ff0c Author: David Brooks '' Date: Thu Jun 26 23:23:33 2014 +1200 Fix typo. commit 9f8f1773250bd174050513d32f5223701dd7dab3 Merge: 2fdc49e98 4f1273567 Author: David Brooks '' Date: Fri Aug 22 10:53:59 2014 +1200 Merge branch ''\''master'\''' into datastore commit 4f127356700168c9eaaef4020e267a48cef85d61 Author: Alan Garny '' Date: Wed Aug 20 19:55:08 2014 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 4d9b609b734b6595616c0e990099c43e87feea24 Author: Alan Garny '' Date: Wed Aug 20 19:51:02 2014 +0200 CellML Annotation view: added support for the new BioModels.net Qualifiers '(closes' '#442)' '[ci' 'skip].' commit 0095e4f1b1c413e1629acc2b78a61a6de98f7d7b Author: Alan Garny '' Date: Wed Aug 20 19:41:33 2014 +0200 CellML Annotation view: added support for the new BioModels.net Qualifiers '(closes' '#442).' commit b5c354c20d2869bbed6733c26f4b5f80d7fbed23 Author: Alan Garny '' Date: Wed Aug 20 19:12:12 2014 +0200 Packaging: the files contained in the ZIP file are now in the root directory and not under Applications/OpenCOR '(closes' '#443).' commit 076024f18d8bbcd89e8a66502da60cf600397542 Author: Alan Garny '' Date: Wed Aug 20 19:08:27 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c6526526126c12d8cd23c9cd6fb2571b63c70e0e Author: Alan Garny '' Date: Wed Aug 20 19:02:21 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d1956d3f7210bf01ee9f62ae3af90045c666feaa Author: Alan Garny '' Date: Wed Aug 20 17:31:51 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 6c965df5fe08da759d4ec289179955f6d5f1aa00 Author: Alan Garny '' Date: Wed Aug 20 16:44:54 2014 +0200 Now use @rpath rather than @executable_path on OS X '(closes' '#434).' commit 9e99d3854092127c4414981cccffc3aab0ad1878 Author: Alan Garny '' Date: Wed Aug 20 15:50:27 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f543e70d4a0d378988ae44071d9cf30977bc3a2f Author: Alan Garny '' Date: Wed Aug 20 15:22:33 2014 +0200 Updated the RPATH value for Linux. commit 0b7fd98ae03c3de4bc3e5b3fdfc3ecc42c087372 Author: Alan Garny '' Date: Wed Aug 20 14:03:42 2014 +0200 Re-enabling the Pretty CellML view and updated the documentation accordingly '(#17)' '[ci' 'skip].' commit c59580b669b622bbb812bf7ca4682dc0a302240b Author: Alan Garny '' Date: Wed Aug 20 13:50:43 2014 +0200 Releasing snapshots once again '[ci' 'skip].' commit 6555a8d8426e8a9303f9c47116d12215e3ab95e0 Author: Alan Garny '' Date: Tue Aug 19 19:14:43 2014 +0200 Done updating the user documentation for version 0.3 of OpenCOR '(closes' '#428).' commit 2dc7022a20f67a0c980655c3068fb1a49109c159 Author: Alan Garny '' Date: Tue Aug 19 19:07:47 2014 +0200 Minor updates to the developer and user documentations '[ci' 'skip].' commit 747acb78f02d80a42695ec102e13f5479fdc724f Author: Alan Garny '' Date: Tue Aug 19 18:48:07 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit dc07bd2a9930105e2c4a7067e4ec38d77e8a51a0 Author: Alan Garny '' Date: Tue Aug 19 18:44:58 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 94fe1af80fd3c7b62a5a4301450024766f978854 Author: Alan Garny '' Date: Tue Aug 19 17:26:18 2014 +0200 Slowly getting ready for version 0.3 '[ci' 'skip].' commit 6e847b502ffc66a12347f28263e3072e5301a094 Author: Alan Garny '' Date: Tue Aug 19 17:15:50 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 4a90bc33e02f0e1c42430fb2d9ceed198e73f818 Author: Alan Garny '' Date: Tue Aug 19 16:33:06 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit fbe86054fc29c941353cf82e5efd6dcf072453f0 Author: Alan Garny '' Date: Tue Aug 19 16:16:39 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit d50fd2f9da21d413525dc60dd20919c87d663c0d Author: Alan Garny '' Date: Tue Aug 19 15:15:36 2014 +0200 Some minor cleaning up. commit f53af3362e7a3a3b431dc5a02e81b692d6f5b6c3 Author: Alan Garny '' Date: Tue Aug 19 15:03:22 2014 +0200 CellML support: fixed an issue with nested local imports not being properly retrieved '(closes' '#441).' commit 9d4c2c9e8782a5feb1d4c67b9caaee212b0134a7 Author: Alan Garny '' Date: Tue Aug 19 13:59:22 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit edc433c7e0e26be963d19958808a102d3d126db8 Author: Alan Garny '' Date: Tue Aug 19 13:15:26 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit f960a583992a00f2745a0a319724541c89f32abd Author: Alan Garny '' Date: Tue Aug 19 10:48:18 2014 +0200 Minor update to the developer documentation following the release of Qt Creator 3.2.0 '[ci' 'skip].' commit b697f16f18b782ef60ab6724e23e40bd76c7b7c4 Author: Alan Garny '' Date: Tue Aug 19 09:46:21 2014 +0200 CellML API plugin: updated its binaries. Somehow, the debug binaries were wrong, resulting in a debug version of OpenCOR not being able to load CellML-based plugins. In the same, running the tests on a debug version of OpenCOR would fail for CellMLTools. commit daa2f4dd7d490d3dc1642dc1b989adc77f1c580d Author: Alan Garny '' Date: Mon Aug 18 21:27:45 2014 +0200 Slight change to the README.txt file for the CellML API plugin '[ci' 'skip].' commit 314ceaba56503ea4b0257dfa19161a5792ca4c52 Author: Alan Garny '' Date: Mon Aug 18 18:15:13 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 79ee61d90f5fac76688599d79c5b61ac28bf39e4 Author: Alan Garny '' Date: Mon Aug 18 18:07:36 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 8c83bbfe9487cdbd144c0f1542984b63c54fa151 Author: Alan Garny '' Date: Mon Aug 18 17:58:49 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 4df4197f2e4262430ecc6e9656e18fb35a7b6c6b Author: Alan Garny '' Date: Mon Aug 18 17:48:36 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 2fbf40aff9dd95c8df5c56820017be1f14cdbd7e Author: Alan Garny '' Date: Mon Aug 18 17:25:32 2014 +0200 Updated the SUNDIALS 'plugin'\''s' binaries. commit 9c5fe98c15ac28f12d65a3faac557f972030004e Author: Alan Garny '' Date: Mon Aug 18 17:01:29 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit fab146b0b9ec7c9d579e442946375ba6bec71da6 Author: Alan Garny '' Date: Mon Aug 18 16:58:54 2014 +0200 Slight update to the description of our SUNDIALS plugin '[ci' 'skip].' commit 8c1351391babbfc8bea6a2013ac2d55065493bf4 Author: Alan Garny '' Date: Mon Aug 18 16:20:22 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit f4d33c4308b7e671a7e537c27d021184828151f7 Author: Alan Garny '' Date: Mon Aug 18 15:38:33 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit c8048bd946610f57f8559582bd9f8e64d48cbb43 Author: Alan Garny '' Date: Mon Aug 18 14:33:38 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit fa2d64c2456a5c6c00f922187c0190a756b24a05 Author: Alan Garny '' Date: Mon Aug 18 14:29:55 2014 +0200 Slowly getting ready for version 0.3. commit a9287c11e3a3fb44fa19dc20f04433002d1020e1 Author: Alan Garny '' Date: Mon Aug 18 13:06:51 2014 +0200 Slight improvements to 'initPluginsPath()' '[ci' 'skip].' commit 7abd88a22413e54c2fa68843a986a3edb68ffe4e Author: Alan Garny '' Date: Sun Aug 17 11:25:17 2014 +0200 Improved 'Plugin::info()' by only providing the error message, if any, when requested. commit 9565813d7d0e2ce4abcb68b80335fdc7536702a4 Author: Alan Garny '' Date: Sun Aug 17 11:07:01 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c910c7eca93285ed5ff4e06d0729e8c623ac6562 Author: Alan Garny '' Date: Sun Aug 17 09:47:12 2014 +0200 Only copy necessary Windows distribution files '[ci' 'skip].' commit 23cc1b67fbaeee58386d6de8bfb74170f3f8daff Author: Alan Garny '' Date: Sat Aug 16 18:01:14 2014 +0200 Use proper '(i.e.' release or 'debug)' Windows distribution files '[ci' 'skip].' commit 6f51fefa98d3234712d56295c7b99744907b29fc Author: Alan Garny '' Date: Sat Aug 16 17:59:47 2014 +0200 Some minor cleaning up of the CellML API readme file '[ci' 'skip].' commit 8b6c0571325bea734873bbf9c3d173b781a6379d Author: Alan Garny '' Date: Sat Aug 16 16:23:20 2014 +0200 Use msvcp100d.dll and msvcr100d.dll '(rather' than msvcp100.dll and 'msvcr100.dll)' when building in debug mode '[ci' 'skip].' commit b6a22109be83cae8173e25e057cd862a72649713 Author: Alan Garny '' Date: Fri Aug 15 22:57:26 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f4ed00f957f89617ddfae4afa6f61ede0d56ff2c Author: Alan Garny '' Date: Fri Aug 15 22:42:15 2014 +0200 Some minor cleaning up. commit 1d58cf39437bd37c02d1ac231afd81ae4c8245d3 Author: Alan Garny '' Date: Thu Aug 14 23:45:08 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit a8a1c0e094fe1e54fd8c2555f2715537d84f4f78 Author: Alan Garny '' Date: Thu Aug 14 23:07:13 2014 +0200 Core plugin: open-related actions are now disabled when no views are available '(closes' '#440).' commit 1d22037652474c38ea7ed0805a530558333726e6 Author: Alan Garny '' Date: Thu Aug 14 21:51:57 2014 +0200 Fixed the issue with some plugin selections crashing OpenCOR on restarting '(closes' '#439).' commit 9da316ad25016a65eb941bc5898efc6bee2c9881 Author: Alan Garny '' Date: Thu Aug 14 21:29:35 2014 +0200 Viewer: fixed the issue with digit grouping not working with integer numbers '(closes' '#438).' commit 9403b1c49a7dc77e97c36b03d013b02f48beff61 Author: Alan Garny '' Date: Thu Aug 14 17:03:05 2014 +0200 Improved the file and CellML file managers '(closes' '#437).' commit 43cdc8d5e965d841f32334b90964a6f234111e2c Author: Alan Garny '' Date: Thu Aug 14 16:38:18 2014 +0200 CellML support: slight improvement to our 'isCellmlFile()' method '(closes' '#436).' commit 03d6fb37aaea1d973e37dbe197980fe5e6634729 Author: Alan Garny '' Date: Thu Aug 14 16:11:25 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3f8c71eb29485ddaa61ca53eebd493e38383e00c Author: Alan Garny '' Date: Fri Aug 8 15:59:11 2014 +0200 Updated our CellML API binaries. commit 29e58a11f5a28c1fffdc571d95cf4014b4259390 Author: Alan Garny '' Date: Fri Aug 8 15:09:57 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 6320ef6bfa5d95dc50e33387f100a669dd36f822 Author: Alan Garny '' Date: Fri Aug 8 14:49:11 2014 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit 98d26e1de41468d04f527094dba25f873e8bb306 Author: Alan Garny '' Date: Fri Aug 8 13:00:43 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e8829f4b6d0e272b80f78107f94880f8bd6e791 Author: Alan Garny '' Date: Fri Aug 8 11:58:49 2014 +0200 Can now use whatever file extension we want when exporting a file to CellML 1.0 '(closes' '#433).' commit c4dba6bf46426016a6f29ce48d0ef4dd94288c84 Author: Alan Garny '' Date: Fri Aug 8 11:03:14 2014 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit 4726d87f889665701b3ec26e6b04419e349db20e Author: Alan Garny '' Date: Fri Aug 8 10:49:14 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 2bec3dac19564faa09dd79ddf4ab045526c78c2c Author: Alan Garny '' Date: Thu Aug 7 17:39:50 2014 +0200 Decrease the size '(should' it be 'possible)' of some deployed files on Linux '[ci' 'skip].' commit b0de7e3a858259d496d484636f58140e6c5c66f4 Author: Alan Garny '' Date: Thu Aug 7 16:42:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0b7ca855b956f0db094e6e2649908ff00fe5bc77 Author: Alan Garny '' Date: Thu Aug 7 10:56:57 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3915c011dd5ac55dec235dee507623c347c14fb2 Author: Alan Garny '' Date: Thu Aug 7 10:35:43 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5a9f9de34d82bd00bc8babf40e6c1716e99549c6 Author: Alan Garny '' Date: Wed Aug 6 15:46:29 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 713889c8f8d41ad84367bde26e46a6aff650bd74 Author: Alan Garny '' Date: Wed Aug 6 15:44:01 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2152ad9f09f4409418f343e00463d5071895448f Author: Alan Garny '' Date: Wed Aug 6 15:34:44 2014 +0200 New snapshots. commit 3f6675ec7f0a987fcd25806f4cf1330d78736b5e Author: Alan Garny '' Date: Wed Aug 6 15:13:56 2014 +0200 '"Save' 'As"' now allows users to name their file as they please '(closes' '#432).' commit 3793f82cbe450bf9aba6d33ebc5d1d81e60eb469 Author: Alan Garny '' Date: Wed Aug 6 15:13:32 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b6233f30d92c31abae48f5e28ba9ca4b6248c565 Author: Alan Garny '' Date: Sat Aug 2 20:21:45 2014 +0200 Fixed the issue with removing an ontological term associated with a CellML element erasing the list of possible ontological terms '(if' there was 'one)' '(closes' '#385).' commit 105c6dfcb4b9366ba3a117effcafcd8f13a70fdf Author: Alan Garny '' Date: Sat Aug 2 19:16:53 2014 +0200 Fixed the issue with the wrong message being displayed after adding a term directly and removing it straightaway '(closes' '#310).' commit 9207b34fd60a0a31ae1b2a45e00d86d0b6faf500 Author: Alan Garny '' Date: Sat Aug 2 18:13:28 2014 +0200 Fixed the issue with duplicating and saving a file resulting in its original temporary file name being remembered in the list of recent files '(closes' '#429).' commit e8f8ef29f240f7bea6e8277f425d1d9cb005c21e Author: Alan Garny '' Date: Sat Aug 2 18:07:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 50ef4369f8b3609e0bfeaf9d52d0ddf8e989042d Author: Alan Garny '' Date: Sat Aug 2 18:03:51 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a45fe37c626cdb6065efc5514767869905acdb34 Merge: 39c7acdf0 51b501f06 Author: Alan Garny '' Date: Sat Aug 2 17:32:00 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 39c7acdf086be5584bb0f395c4eb77ee63c41132 Author: Alan Garny '' Date: Sat Aug 2 17:31:29 2014 +0200 Fixed the issue with opening a recent file on Windows '(closes' '#430).' commit 51b501f060f7b5d097f0b20c24dcb665bcc7ae1c Author: Alan Garny '' Date: Sat Aug 2 16:58:45 2014 +0200 Updated the user documentation '(#428)' '[ci' 'skip].' commit 02376380f2ffebec77cc7f48802c7ffafe1e279d Author: Alan Garny '' Date: Fri Aug 1 15:58:23 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7c1618e608069e106243ad6b82f9244884237709 Author: Alan Garny '' Date: Fri Aug 1 15:56:33 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 14406995e3c71f6978afe1a03eb2c98812a906d7 Author: Alan Garny '' Date: Fri Aug 1 11:26:20 2014 +0200 New snapshots. commit a926ab82ad4da1a28210a1a8435d2eff9a52af75 Author: Alan Garny '' Date: Thu Jul 31 18:49:41 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c763636d79d3ef2dcf196b95b288b6d6fbfb4582 Author: Alan Garny '' Date: Thu Jul 31 18:43:12 2014 +0200 Functional tests: updated the documentation '(#416)' '[ci' 'skip].' commit 6ea079843c0ed7f1e0ae220d0a411b6ea2e1d2ca Author: Alan Garny '' Date: Thu Jul 31 18:14:34 2014 +0200 Functional tests: added some models '(#416)' '[ci' 'skip].' commit c453ed7bfd6e9d25b48e381aa499e459d596606a Author: Alan Garny '' Date: Thu Jul 31 17:40:52 2014 +0200 Fixed the text editor issue that resulted in the replacing all feature looping forever in some cases '(closes' '#426).' commit 7e59c1d50cfadc6daee4ccda844769cd93cc8e35 Author: Alan Garny '' Date: Thu Jul 31 17:21:26 2014 +0200 Fixed the text editor issue that resulted in the replacing all feature looping forever in some cases '(closes' '#426).' commit 72923e232af87129872fe1f05f9329ad0a921b1f Author: Alan Garny '' Date: Thu Jul 31 16:02:43 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3ddc534abb22281f3ab905317ac46311c2940282 Author: Alan Garny '' Date: Thu Jul 31 14:16:57 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5b0662c6add845d54cc9c2339daa4264737abfa8 Author: Alan Garny '' Date: Wed Jul 30 18:45:54 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b934b696506df2495fbaf1edff0db01caae81df0 Author: Alan Garny '' Date: Wed Jul 30 18:26:26 2014 +0200 Minor update to our developer documentation '[ci' 'skip].' commit 880ce23b9cd7d323662d69c3ccc88393995bcda5 Author: Alan Garny '' Date: Wed Jul 30 18:04:19 2014 +0200 Fixed an issue with the actions of the Core CellML editing widget not being always initialised '(closes' '#425).' commit 6ab999d062a32b9090364f1f69c1034879cd9958 Author: Alan Garny '' Date: Wed Jul 30 17:50:31 2014 +0200 Keep track of import contents for as long as the model is not reloaded '(closes' '#424).' commit 21da2ac02e26a0ed4c395812343c95c1584ec2b4 Author: Alan Garny '' Date: Wed Jul 30 17:45:47 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 65132d19e1f4c11de384d1d42a721452457d09f8 Author: Alan Garny '' Date: Wed Jul 30 16:48:50 2014 +0200 Fully instantiate all the imports, if any, of a CellML file only when necessary '(closes' '#423).' commit 4166633d1f6289f6c7ab33eabdd73f240cf3b937 Author: Alan Garny '' Date: Wed Jul 30 16:42:26 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d1a955ccbe0b0c378dce53bf6d26cafa740c7e32 Author: Alan Garny '' Date: Wed Jul 30 16:35:23 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 4f40e493a1cd16bb0f90a001a9fe9a9cd789312d Author: Alan Garny '' Date: Wed Jul 30 15:56:15 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a82bf1d0a0b1e1daa167c9ab9c68b5baaf3f1942 Author: Alan Garny '' Date: Wed Jul 30 14:37:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8732e1180c56f01ceba8fc42cec3824ff118bf02 Author: Alan Garny '' Date: Wed Jul 30 13:54:18 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d25e6e3486424734bfa091604591529bfb45c99a Author: Alan Garny '' Date: Tue Jul 29 18:31:55 2014 +0200 New snapshots. commit deab43bc57ff80eaf728180caf234e1af461da20 Author: Alan Garny '' Date: Tue Jul 29 18:23:59 2014 +0200 Fixed the issue that prevented the CellML Tools plugin from exporting a remote CellML 1.1 file to a given file '(closes' '#422).' commit d280a86afe5d901315da49f44b4cf9cfaf2637a3 Author: Alan Garny '' Date: Tue Jul 29 16:22:16 2014 +0200 Done revisiting our handling of local/remote files '(closes' '#420).' commit 9ac581277bc333815ea8ce7063e9b82abd53d542 Author: Alan Garny '' Date: Tue Jul 29 16:03:35 2014 +0200 Some work on revisiting our handling of local/remote files '(#420)' '[ci' 'skip].' commit 8c0f4d23726937b7bc2f1dcc8f612e00879da375 Author: Alan Garny '' Date: Tue Jul 29 14:58:17 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0e17a54473d416334e14ad503f44810a8d664513 Author: Alan Garny '' Date: Tue Jul 29 14:32:44 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5895fd40d6279b0acddff7f7e2162a268c68da7f Author: Alan Garny '' Date: Mon Jul 28 20:36:19 2014 +0200 Fixed an issue with opening a local import in the CellML Annotation view '(closes' '#419).' commit 46cf73ac6642e3d9279e0e96c4225a6c90b14128 Author: Alan Garny '' Date: Mon Jul 28 20:33:18 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d7828abac169a3f0eec5f5762b968f404a865ac2 Author: Alan Garny '' Date: Mon Jul 28 20:20:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 808a1ea169541883d714b6b37f70aff80319cf64 Author: Alan Garny '' Date: Mon Jul 28 19:54:20 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a80829ffd62e1af6037fbeae2d331f843c3ab7fa Author: Alan Garny '' Date: Mon Jul 28 19:47:52 2014 +0200 Removed the xml:base value in the example Noble 1962 model '(closes' '#418)' '[ci' 'skip].' commit d7cfc219de9169b8ae8846c4109449892ce361e2 Author: Alan Garny '' Date: Mon Jul 28 19:42:50 2014 +0200 Fixed the issue with relative import href URLs not being resolved in the 24 July 2014 snapshot '(closes' '#417).' commit c32152e24340d35379eac576f4fe75d862482503 Author: Alan Garny '' Date: Mon Jul 28 16:00:37 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f1d0ec927435468259d03c05666ac44ff700d3f8 Author: Alan Garny '' Date: Thu Jul 24 17:48:41 2014 +0200 New snapshots. commit 5e0c512b4d1887b64f5c3a112ae78b97a66c5fa8 Author: Alan Garny '' Date: Thu Jul 24 17:44:30 2014 +0200 Fixed the issue with the 23 July 2014 snapshot not supporting imports '(closes' '#412).' commit af22c829ca1bc0d68771988a13b1646c05e963a4 Author: Alan Garny '' Date: Thu Jul 24 14:57:23 2014 +0200 Can now access access previous snapshots '(closes' '#414)' '[ci' 'skip].' Starting from the one from 13 April 2014. commit 2b20034039272ee6d0ec0506bd527f6ec5d750ad Author: Alan Garny '' Date: Thu Jul 24 14:54:26 2014 +0200 Can now access access previous snapshots '(closes' '#414)' '[ci' 'skip].' Starting from the one from 13 April 2014. commit 90d025a7d72692418c29dc375b9dcf30cd333581 Author: Alan Garny '' Date: Thu Jul 24 11:35:32 2014 +0200 Created a functional tests page in the developer documentation '(closes' '#416)' '[ci' 'skip].' Now, we just need to populate it... commit d6f90c0bb7009f412ba29218c8ce335e07b13932 Author: Alan Garny '' Date: Thu Jul 24 11:16:39 2014 +0200 Made the titles of information widgets opaque '(closes' '#413).' commit 01ea35d3638d770512064d258367b6d8d96ec937 Author: Alan Garny '' Date: Thu Jul 24 10:34:38 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1b28184d332a5ed4ac70c845b9dc96165bec6ef2 Author: Alan Garny '' Date: Wed Jul 23 19:20:59 2014 +0200 Updated the download page '[ci' 'skip].' commit 04ddac4ef18fa0a51d3ea0edd48d7ea2cbead3b5 Author: Alan Garny '' Date: Wed Jul 23 18:59:16 2014 +0200 New snapshots. commit e2773cfb9ccbfdd33bfcf017ee58bb220141ae65 Author: Alan Garny '' Date: Wed Jul 23 18:54:39 2014 +0200 Now keep track of all the settings in the Single Cell view when reloading a file '(closes' '#409).' commit 8ef8b89498686f851f4769e7060af0b00ef5ef94 Author: Alan Garny '' Date: Wed Jul 23 18:08:27 2014 +0200 Some work on keeping track of all the settings in the Single Cell view when reloading a file '(#409)' '[ci' 'skip].' commit 1ba8e79cde96b59f77cba2fbe3d18a8338f90858 Author: Alan Garny '' Date: Wed Jul 23 17:13:05 2014 +0200 Fixed the issue that preventing the replace side of the find/replace feature from working properly in the Raw CellML view '(closes' '#410).' commit 97aeee2487a0da89cd2f7ea80ff683a48c263e57 Author: Alan Garny '' Date: Wed Jul 23 16:44:24 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit aee0712599ef60fc31c9404a96d7ce15ac2f4e40 Author: Alan Garny '' Date: Wed Jul 23 15:56:32 2014 +0200 Fixed the issue with find previous/next in the Editor widget '(closes' '#411).' commit 76b0d0a3859be2fdf1eafb31327ef8dbc19e5fdb Author: Alan Garny '' Date: Wed Jul 23 15:53:34 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0a1634f47b27e875acd643f66aeb19dd7ebc2ed6 Author: Alan Garny '' Date: Wed Jul 23 14:58:46 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b88243dbbc85c16ba4f525e0ba1e42be7f862363 Author: Alan Garny '' Date: Tue Jul 22 19:19:11 2014 +0200 Fixed the issue with a deleted file being wrongly added to the list of recent files when closing its tab '(closes' '#408).' commit 2c7246f55159d37410709082ad7a0214d1f90fc7 Author: Alan Garny '' Date: Tue Jul 22 19:08:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a00f59f2bb60c2a97b32c05e717965cd869ea517 Author: Alan Garny '' Date: Tue Jul 22 17:27:13 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7aecddf72fc8ead39292f28848bd88ae07388d5f Author: Alan Garny '' Date: Tue Jul 22 16:39:17 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8f0766aff29414c42ae763739c43a9787729766e Author: Alan Garny '' Date: Tue Jul 22 15:35:26 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a526eff792671e183c2d1ed1f63f9f0d92e016e5 Author: Alan Garny '' Date: Tue Jul 22 14:43:41 2014 +0200 Slight improvement to the error message generated by the CellML 1.0 exporter '[ci' 'skip].' commit 9bf28e1e63c0f6543183caf0d8506d9797cb20ab Author: Alan Garny '' Date: Tue Jul 22 14:28:46 2014 +0200 CellML tools: suggest a better file name when exporting a remote file to CellML 1.0 or a user-defined format '(closes' '#407).' commit d25a1aaed6fee372ada5205b817f222430e3b803 Author: Alan Garny '' Date: Tue Jul 22 13:57:48 2014 +0200 Fixed the issue with the plugins directory not being properly set in CLI mode '(closes' '#406).' commit a80938bb14978429c042229101a679922012a0c1 Author: Alan Garny '' Date: Tue Jul 22 13:40:21 2014 +0200 Fixed the issue with the plugins directory not being properly set in CLI mode '(closes' '#406).' commit 506fd2b4041f6936ad4214436f04625251495284 Author: Alan Garny '' Date: Tue Jul 22 13:37:00 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 341a15bd9033887f7599353bc1bf4afb553078d7 Author: Alan Garny '' Date: Mon Jul 21 19:46:11 2014 +0200 Slight update to the user documentation following our fix for issue '#405' '[ci' 'skip].' commit 71a841e3a56b06c88028e3480888abad8f3f91ed Author: Alan Garny '' Date: Mon Jul 21 19:39:41 2014 +0200 Done getting rid of the flickering in the CellML Annotation and Single Cell views '(closes' '#405).' commit 26b90fc4773ea70bfe7b416b5715f25ed8848bb4 Author: Alan Garny '' Date: Mon Jul 21 19:22:49 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 17c12da59fd0cf135f28d4b2ba907f0c7cdb7401 Author: Alan Garny '' Date: Mon Jul 21 18:45:07 2014 +0200 Some work on reducing the flickering in the CellML Annotation and Single Cell views '(#405)' '[ci' 'skip].' commit 94ac44734738181e0e9266debb28f46b0a32f64d Author: Alan Garny '' Date: Mon Jul 21 18:05:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 61f8178968a45c85f315b2f0b599a0deeccb60cf Author: Alan Garny '' Date: Mon Jul 21 14:21:07 2014 +0200 Fixed an issue with the viewer that always rendered a valid equation as invalid if subscripts, Greek symbols and digit grouping were disabled '(closes' '#404).' commit f864c1778e136e2e154bf5d5780cec0e621c90dc Author: Alan Garny '' Date: Mon Jul 21 11:57:20 2014 +0200 Fixed the issue with saving a duplicated file resultign in the file being considered locked '(closes' '#403).' commit 710fce316b01e4ac1ba73da05d64dd7d436a729e Author: Alan Garny '' Date: Fri Jul 18 19:59:18 2014 +0200 Removed 'qStringToConstCharArray()' '(closes' '#402).' commit 353ee999e1efba032d8fc18487c3935fc5dc15bd Author: Alan Garny '' Date: Fri Jul 18 19:15:36 2014 +0200 Slight updates to the user documentation '[ci' 'skip].' commit dee16595c61afe1e2d0753ae68e5bcd78a69b5c0 Author: Alan Garny '' Date: Fri Jul 18 19:10:42 2014 +0200 Fixed the issue with some plugin selections crashing OpenCOR on restarting '(closes' '#401).' commit 6ea90bbf28a0974d2a666c3e7adbf6d19077b241 Author: Alan Garny '' Date: Fri Jul 18 18:51:28 2014 +0200 The viewer does now get updated every time we switch files '(closes' '#400).' This is what we should have done all along, but ok $'nevermind\342\200\246' commit 47a8ecb81fe119cefc0baa00e8feb9634ec30132 Author: Alan Garny '' Date: Fri Jul 18 18:48:14 2014 +0200 Improved our Viewer plugin '[ci' 'skip].' commit 388644aac5d13a2451b35b311acbe6e4a0d1c5cc Author: Alan Garny '' Date: Fri Jul 18 18:41:54 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit fd00768140b9b9b863b105fe313c89ac30705f97 Author: Alan Garny '' Date: Fri Jul 18 16:44:15 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 10512e50e36d07d035349cce8fa135c88538d4fc Author: Alan Garny '' Date: Fri Jul 18 16:39:13 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself '(#399).' Also some minor cleaning up '[ci' 'skip].' commit 0d456f80b09d694546f409611fc97164dbe640a9 Author: Alan Garny '' Date: Fri Jul 18 15:34:35 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself '(#399)' '[ci' 'skip].' commit 20c558a6df10a7ab92bf942e44cdf8649ad08b38 Author: Alan Garny '' Date: Fri Jul 18 15:23:33 2014 +0200 Some work on having Oxygen icons used by a given plugin in the plugin itself '(#399)' '[ci' 'skip].' commit 988cd16b0cf779207fbd05102b5a71cc27fecd94 Author: Alan Garny '' Date: Fri Jul 18 14:04:10 2014 +0200 Revert '"Some' work on moving some widgets to their own plugin from the Core plugin '(#396)' '[ci' 'skip]."' This reverts commit 0ad33124db1962fbbc119b28cf3ddd88dc5d7549. commit 0ad33124db1962fbbc119b28cf3ddd88dc5d7549 Author: Alan Garny '' Date: Fri Jul 18 13:53:02 2014 +0200 Some work on moving some widgets to their own plugin from the Core plugin '(#396)' '[ci' 'skip].' commit c0fe14d8e81c3e2d90977085fb221906ccc7145f Author: Alan Garny '' Date: Fri Jul 18 13:11:19 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 746326aa216c8253e3c3189db069156c1fefd1df Author: Alan Garny '' Date: Fri Jul 18 11:59:49 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d20b7cf22a734beed5f56ebc5b845d8786bf4332 Author: Alan Garny '' Date: Fri Jul 18 11:05:55 2014 +0200 Travis-CI: use homebrew to install CMake on OS X. commit b7c313ec7eb3e916dc0fa118dca1ed427e426d23 Author: Alan Garny '' Date: Fri Jul 18 11:03:25 2014 +0200 Travis-CI: use homebrew to install CMake on OS X. Indeed, for some strange reasons, to get the CMake binaries for OS X $'doesn\342\200\231t' seem to work anymore '(see' 'https://travis-ci.org/opencor/opencor/builds/30246404).' commit 199eb63732401dc52c7396e3fde2c8e21b0cccb7 Author: Alan Garny '' Date: Fri Jul 18 10:47:27 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 8abb37f180c8d4d789f1e1bc957b4025dee05365 Author: Alan Garny '' Date: Fri Jul 18 10:43:14 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 20c8f53daed3792e2ba0e822bfa7e3ea841e5d36 Author: Alan Garny '' Date: Fri Jul 18 10:35:33 2014 +0200 All the use of '[Enter]' to open a file in the file browser/organiser window plugins '(closes' '#398).' commit 645395a1776919fc663b3004b746cd2e143ca051 Author: Alan Garny '' Date: Fri Jul 18 10:26:45 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 1e2b86eba85153563b222ae9adde3be19c2e2cde Author: Alan Garny '' Date: Thu Jul 17 19:04:00 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 94c72855a49c8018125dacf90b7fb029c47e2531 Author: Alan Garny '' Date: Thu Jul 17 19:01:12 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit d723d0f8240ebc6c2c5d83d122be43db023e2a17 Author: Alan Garny '' Date: Thu Jul 17 18:40:29 2014 +0200 Remove Qt deprecated code '(closes' '#397).' commit 6423ca184ab89fa5d908345019f0784a87c10520 Author: Alan Garny '' Date: Thu Jul 17 18:14:32 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit c887e8801e829a7525e3c9c5917321e6c3f145dc Author: Alan Garny '' Date: Thu Jul 17 16:25:28 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 65d1f2e667feed76ba6c48cc5bddef785d66492a Author: Alan Garny '' Date: Thu Jul 17 16:10:09 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 568c147025f3e70770f6d92420ba013b2a790aef Author: Alan Garny '' Date: Thu Jul 17 14:43:50 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0ab49a782c9868e232578dd4b99d8bc8683932b5 Author: Alan Garny '' Date: Thu Jul 17 14:10:33 2014 +0200 Some work on the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit b7cae0346e08b9c1d78004b071457d0c408f1140 Author: Alan Garny '' Date: Thu Jul 17 13:28:45 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 46e0b9e155fb8dbd67822de218c85ef4500be6d0 Author: Alan Garny '' Date: Wed Jul 16 18:51:39 2014 +0200 Some work on the Raw CellML view plugin '(#16)' and the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit ed96f0a18c4e40043191b3c5c738b8a4541dcb0d Author: Alan Garny '' Date: Wed Jul 16 18:32:33 2014 +0200 Some work on the list for CellML warnings/errors '(#360).' commit 2b3aac03c35ec2dc3071ce7b58c24c5be15116cc Author: Alan Garny '' Date: Wed Jul 16 18:06:13 2014 +0200 Some work on the Raw CellML view plugin '(#16)' and the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 3db3f6ddf3da48b9337e21a5fc123a1d023473ef Author: Alan Garny '' Date: Wed Jul 16 18:06:00 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0b34f8fc5c60d28a5562b3589194c1a1cc516e23 Author: Alan Garny '' Date: Wed Jul 16 16:59:17 2014 +0200 Some work on the Raw CellML view plugin '(#16)' and the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit 7e548fd12863835aafa170f9edab455d254d622e Author: Alan Garny '' Date: Wed Jul 16 16:52:34 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5af20a0507f8e9f8ee99d2809d715783001c802d Author: Alan Garny '' Date: Wed Jul 16 16:42:15 2014 +0200 Some work on the Raw CellML view plugin '(#16)' and the list for CellML warnings/errors '(#360)' '[ci' 'skip].' commit ea5716bc9c18ab6914e8e565003558bd609db9d6 Author: Alan Garny '' Date: Wed Jul 16 15:10:40 2014 +0200 Some work on the Raw CellML view plugin '(#16)' '[ci' 'skip].' commit f8754fa6537b4137d25de5c64fdbc59d3046d722 Author: Alan Garny '' Date: Wed Jul 16 14:41:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 51bda41cb268786aa746a6cce9bf1a626a3a8ce3 Author: Alan Garny '' Date: Wed Jul 16 14:36:50 2014 +0200 Some minor cleaning up. commit 63f4420142c018993556fe6bd41dee6fd6a070f9 Author: Alan Garny '' Date: Wed Jul 16 11:18:12 2014 +0200 Done adding a '"CellML' 'Validation"' action to the Core CellML editing plugin '(closes' '#361).' commit 9ca36ff3f1239e860a7028b2d132e0d6d6126227 Author: Alan Garny '' Date: Wed Jul 16 11:11:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit ec1bd1c8902c2843c8efe72b865a7f68a80bcc70 Author: Alan Garny '' Date: Wed Jul 16 11:06:39 2014 +0200 Some minor cleaning up. commit 42fe5e1d7149532bbcaddbdba06056ec19c511d0 Author: Alan Garny '' Date: Fri Jul 11 15:58:46 2014 +0200 Done adding a '"CellML' 'Validation"' action to the Core CellML editing plugin '(closes' '#361).' commit be47e2a5db8ca070d32f22acec638200c88d7531 Author: Alan Garny '' Date: Fri Jul 11 14:24:05 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit e8867fd4647add0a3e3764297fdf5bc88373b22a Author: Alan Garny '' Date: Fri Jul 11 14:21:05 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1c96ee584e5eacb1a73a6c5cb24ecccdd78c87e5 Author: Alan Garny '' Date: Fri Jul 11 13:12:50 2014 +0200 Can now undo/redo changes that have been changed through the Core editing plugin '(closes' '#395).' commit ce263d93a62a1f274d09ddb384e2fc4d83eae762 Author: Alan Garny '' Date: Fri Jul 11 11:45:32 2014 +0200 Fixed the issue with modifying a file outside of OpenCOR resulting in being asked for it to be reloaded '(closes' '#394).' commit 63096d7e8eb9f800bf377d45a6529dc19966a18a Author: Alan Garny '' Date: Fri Jul 11 10:53:19 2014 +0200 Had forgotten to update our Pretty CellML view plugin '[ci' 'skip].' commit 38d4f59470236dd1536b24a44ed9c73c75cabd1a Author: Alan Garny '' Date: Fri Jul 11 09:21:06 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 11dba7d9096711f18c164b7f5f507a5cc535fcc1 Author: Alan Garny '' Date: Thu Jul 10 20:03:41 2014 +0200 Fixed the issue with a model requiring an NLA solver having its properties wrongly set in the Single Cell view '(closes' '#393).' commit 7031be023e93f38a144bc6ce2b609e2ac9222ec7 Author: Alan Garny '' Date: Thu Jul 10 19:17:31 2014 +0200 Updated the user documentation '(#377)' '[ci' 'skip].' commit 14b6cc7b4148b7d04cbb8c2263a4893ca58d4334 Author: Alan Garny '' Date: Thu Jul 10 17:17:51 2014 +0200 Improved the file name that we show in the information panel of the Single Cell view plugin '(closes' '#392)' '[ci' 'skip].' commit a8881abca9c99c640097fba3bb23eaddbcdb4626 Author: Alan Garny '' Date: Thu Jul 10 14:26:00 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit db31519843e4c7e8c772bed6916ab711499dde07 Author: Alan Garny '' Date: Thu Jul 10 11:29:52 2014 +0200 Improved the file name that we show in the information panel of the Single Cell view plugin '(closes' '#392).' commit e051ca4620ffc770dba87083a308cfc0df865614 Author: Alan Garny '' Date: Thu Jul 10 11:22:19 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a7a5ec7a59e5e058ea857cd11efc2aeba1cf715a Author: Alan Garny '' Date: Wed Jul 9 14:28:48 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 09de0feba8dce291928dc47f916fc715cbeaad8f Author: Alan Garny '' Date: Wed Jul 9 14:03:04 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d93602cc0c4fc127aeea7812a4823f44ba9fc01c Author: Alan Garny '' Date: Wed Jul 9 12:59:23 2014 +0200 Done with making it possible to run very long simulations '(closes' '#391).' commit 83484cba75b2dee79cad00e8b31bf7bb4b0a967b Author: Alan Garny '' Date: Wed Jul 9 11:37:26 2014 +0200 Fixed an issue with 'Core::setFocusTo()' '[ci' 'skip].' commit 5409be74c4e6f66e981b30b7168243250320dbf8 Author: Alan Garny '' Date: Tue Jul 8 18:52:03 2014 +0200 Slight change to our compiler plugin '[ci' 'skip].' This is the result of fixing a small Xcode building issue '(see' https://github.com/opencor/opencor/commit/6161ff7ee75c094f7f98dcf75221de '4534671d01).' The difference is that here we $'don\342\200\231t' ask for LTO since our compiler plugin effectively compiles only one $'file\342\200\246' commit 7a969f60f8fd04ea7072c0c88195a613db6e4cbb Author: Alan Garny '' Date: Tue Jul 8 18:18:02 2014 +0200 Reverting some code that got committed by mistake '[ci' 'skip].' commit 7f07c97eab737f907a1ca74b5a811b93b5e05620 Author: Alan Garny '' Date: Tue Jul 8 18:12:20 2014 +0200 Minor cleaning up of our Travis-CI script. commit 4ba557bf5eefbc842df39f8afbe7736ea9d2b629 Author: Alan Garny '' Date: Tue Jul 8 17:56:42 2014 +0200 Minor cleaning up of our Travis-CI script. commit 9da17745b4aa2af92500ad1173560b59f1744f20 Author: Alan Garny '' Date: Tue Jul 8 17:49:04 2014 +0200 Updated our third-party binaries on Linux, now that we use better build flags '[ci' 'skip].' In the end, only the LLVM binaries are different. commit 87664362b80b54bb910dee8afca451dac1602795 Author: Alan Garny '' Date: Tue Jul 8 17:38:19 2014 +0200 Minor cleaning up of our Travis-CI script. commit 6ceaa9bd419d140c93cb024430c81b1551ff6204 Author: Alan Garny '' Date: Tue Jul 8 17:30:49 2014 +0200 Minor cleaning up of our Travis-CI script. commit 7c662b24b2215638c015752b28fcbbedf6ea0f3f Author: Alan Garny '' Date: Tue Jul 8 17:29:39 2014 +0200 Minor cleaning up of our Travis-CI script. commit e23f29def708eb2d0b769bd487ee08fe3d609267 Author: Alan Garny '' Date: Tue Jul 8 17:22:12 2014 +0200 Use GCC 4.8 on Travis-CI. Indeed, Travis-CI uses Ubuntu 12.04 LTS, which comes with a version of GCC that is older than 4.7 and therefore $'doesn\342\200\231t' support -std=c++11 '(but' '-std=c++0x).' commit 59ec574196673372ec95a7c8d3d6822e7ab274c8 Author: Alan Garny '' Date: Tue Jul 8 16:56:40 2014 +0200 Updated our third-party binaries on OS X, now that we use better build flags '[ci' 'skip].' commit 6161ff7ee75c094f7f98dcf75221de4534671d01 Author: Alan Garny '' Date: Tue Jul 8 16:33:07 2014 +0200 Fixed a small Xcode building issue '[ci' 'skip].' Xcode considers -O4 and -O3 to be equivalent and therefore generates a warning '(and' therefore an error in our 'case).' Indeed, from Xcode 5.1, -O4 $'doesn\342\200\231t' imply LTO anymore, hence our $'\342\200\230fix\342\200\231.' commit d9e1d1eab8d52506da4a28eed3eec1b0c5362da7 Author: Alan Garny '' Date: Tue Jul 8 16:08:29 2014 +0200 Updated our third-party binaries on OS X, now that we use better build flags '[ci' 'skip].' commit bf0f294159d204adb501da15a5e9f06288230c8c Author: Alan Garny '' Date: Tue Jul 8 15:46:37 2014 +0200 Optimise the build on Linux and OS X '(as' well as using 'LLVM/Clang).' commit 914ddc869cef8d6eed225177c2296bb92bb0bc2e Author: Alan Garny '' Date: Tue Jul 8 15:00:40 2014 +0200 Make sure that we are using the compiler we support '[ci' 'skip].' commit aa4538ea910205291959d3508d8ea8f54dc055df Author: Alan Garny '' Date: Tue Jul 8 14:43:34 2014 +0200 Some minor improvement to our Windows packaging script '[ci' 'skip].' commit 33d57d52cfd5da85d701132edc53be7da2d4da42 Author: Alan Garny '' Date: Tue Jul 8 11:32:12 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c4df4ab7cd02f5123b21f484837cda12f747818d Author: Alan Garny '' Date: Tue Jul 8 11:31:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' Created a function to convert a QString to a const char '*,' and used it in our QScintilla support plugin. commit 34f0de717e7d004a4be3a934f77e456f9648a140 Author: Alan Garny '' Date: Tue Jul 8 11:30:10 2014 +0200 Some minor cleaning up '[ci' 'skip].' Replaced calls to 'qPrintable(QString)' with calls to 'QString::toStdString().' commit aafe239c589341be19dfafd9f55e45dda1e49513 Merge: aa4f57560 81183755e Author: Alan Garny '' Date: Mon Jul 7 15:51:51 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit aa4f57560c5f04081e9ba48c42efbac9afbff7a2 Author: Alan Garny '' Date: Mon Jul 7 15:51:29 2014 +0200 CellML support: slight improvement to our file runtime class. commit 81183755ed89aef1111f0a4831082d6cba7b3dc5 Author: Alan Garny '' Date: Mon Jul 7 14:51:42 2014 +0200 Travis-CI: it would seem that the PPA now offers libcupsprintersupport.so. commit 35e87def7afdda11083e96c19895b3151f31fe03 Author: Alan Garny '' Date: Mon Jul 7 14:42:00 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 45b7d5290e329d1f929a3076f3cde95ef34b7797 Author: Alan Garny '' Date: Mon Jul 7 11:05:25 2014 +0200 Fixed the issue about a deleted file continuously prompting for the file to be closed '(closes' '#384).' commit 777f58f496fc7404b96836d0d456928f51de1a60 Author: Alan Garny '' Date: Mon Jul 7 10:52:51 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 65601b7ace82718ee333af4b1441387e41e6932e Author: Alan Garny '' Date: Mon Jul 7 10:51:37 2014 +0200 Some minor improvement to our file manager '[ci' 'skip].' commit 77b4b61970e993c11b685f2ea76652b2b478235e Author: Alan Garny '' Date: Mon Jul 7 09:38:11 2014 +0200 Some minor improvement to our file manager '[ci' 'skip].' commit cc0d404686ea7e501f0fcbe31eef647cba5a31c8 Author: Alan Garny '' Date: Fri Jul 4 15:31:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 03d834873a5335ad9fe4c7d11a1f8febaac96058 Author: Alan Garny '' Date: Fri Jul 4 15:23:21 2014 +0200 Some work about a deleted file continuously prompting for the file to be closed '(#384)' '[ci' 'skip].' commit 8790b2accdb67a9c67ba88504b68569959d672f6 Author: Alan Garny '' Date: Fri Jul 4 14:25:51 2014 +0200 Some minor refactoring of our file manager '[ci' 'skip].' commit f1d8518af973c78496ac84709c22db9f4834e375 Author: Alan Garny '' Date: Fri Jul 4 14:22:42 2014 +0200 Some minor refactoring of our file manager '[ci' 'skip].' commit 6d20fd767105c14310cfd50c57e36d23ebd98919 Author: Alan Garny '' Date: Fri Jul 4 14:04:35 2014 +0200 CellML Annotation view: slight improvement to the retrieval of possible ontological terms. commit 82dff18b715c7965468ccc2d2f876e1d70fc4de1 Author: Alan Garny '' Date: Fri Jul 4 13:42:30 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit bb773621f4cc97d5e0439207f6f3e418aa0fcb6a Author: Alan Garny '' Date: Fri Jul 4 12:51:58 2014 +0200 Done making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms '(closes' '#333)' '[ci' 'skip].' commit eb1f5e164cc45ea25010228653f709b35f382ef0 Author: Alan Garny '' Date: Fri Jul 4 11:46:41 2014 +0200 Done making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms '(closes' '#333).' commit 674c8d2a4eb27591fb9fb4044385c41c5ea864e3 Author: Alan Garny '' Date: Fri Jul 4 11:30:32 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2f8466147fe224dd8dc1794a77f9e4977d5b9ba8 Author: Alan Garny '' Date: Fri Jul 4 00:43:27 2014 +0200 Minor update to our Travis-CI script. commit e09e8ec6194a7b15609bc6820a11685d336c26b3 Author: Alan Garny '' Date: Thu Jul 3 19:08:39 2014 +0200 Fixed the issue with the CellML Annotation view supporting both the editing and CellML editing interfaces '(closes' '#389).' commit 88abeaf0c9ab18eabe3bee1c9a871019e639db7e Author: Alan Garny '' Date: Thu Jul 3 18:55:03 2014 +0200 Fixed the issue about being able to create a new file only if there is already one that is opened '(closes' '#388).' commit ccfcd91587c557f1155f8e95a323068ac4713104 Author: Alan Garny '' Date: Thu Jul 3 18:53:34 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 153e5e9fc5b409b1b0f4d5c9227c8e9776aecdfa Author: Alan Garny '' Date: Thu Jul 3 17:03:37 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c2c464520e5cf3696017b8cbd656961ad0d95014 Author: Alan Garny '' Date: Thu Jul 3 16:35:29 2014 +0200 Done with a temporary solution to get our Linux build to work on Travis-CI. We are using ppa:beineri/opt-qt531, but that PPA misses /opt/qt53/plugins/printsupport/libcupsprintersupport.so, so we are getting off the OpenCOR website. This is clearly a temporary solution until, hopefully, the PPA author makes /opt/qt53/plugins/printsupport/libcupsprintersupport.so available in his $'PPA\342\200\246' commit 68481709867b64f5d896d387958f918193312dc5 Author: Alan Garny '' Date: Thu Jul 3 16:27:24 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 5659ebaa00c04f8f4db0873a45c3f22a48e3594b Author: Alan Garny '' Date: Thu Jul 3 16:21:02 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 735945f1708f60b4202a34bc21d17d0cb63a32d4 Author: Alan Garny '' Date: Thu Jul 3 16:15:53 2014 +0200 Trying a temporary solution to get our Linux build to work on Travis-CI. commit 8a9be7f0980b998cd7d8f196bc392f649ba41d30 Author: Alan Garny '' Date: Thu Jul 3 15:52:08 2014 +0200 Done upgrading QScintilla from version 2.8.2 to version 2.8.3 '(closes' '#387).' commit 50e07039925636f6f4d83bcdc062af8957eb432e Author: Alan Garny '' Date: Thu Jul 3 15:39:53 2014 +0200 Some minor cleaning up in the README.txt for our third-party plugins '[ci' 'skip].' Indeed, we $'don\342\200\231t' need to $'\342\200\230package\342\200\231' on OS X, now that we have improved our building process. commit b704052f0fb9e38661b03c0a56c4026f4f0180ec Author: Alan Garny '' Date: Thu Jul 3 15:31:50 2014 +0200 Some work on upgrading QScintilla from version 2.8.2 to version 2.8.3 '(#387)' '[ci' 'skip].' commit 6db924f21b275592230d20f1966e6e536a27ec88 Author: Alan Garny '' Date: Thu Jul 3 15:20:06 2014 +0200 Fixed the issue with applying changes in the plugins window resulting all the user settings being reset '(closes' '#386).' commit ce4d1b9e8515f7ab845494ce31ca42dc47479ccd Author: Alan Garny '' Date: Thu Jul 3 14:50:03 2014 +0200 Some work on making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms '(#333)' '[ci' 'skip].' Updated the user documentation. commit 3673f3799ef95911f97299d4005b417505d55ea7 Author: Alan Garny '' Date: Thu Jul 3 11:32:26 2014 +0200 Some work on making use of PMR2/Ricordo rather than semanticSBML to retrieve possible ontological terms '(#333).' This is all done, we are just waiting the PMR2/Ricordo feature to be deployed, hence we are currently using http://staging.physiomeproject.org/pmr2_ricordo/miriam_terms/ rather than https://models.physiomeproject.org/pmr2_ricordo/owlterms/ at the moment. commit 29183b05d44075bfde54535e05e6d38e297a10b4 Author: Alan Garny '' Date: Wed Jul 2 17:39:29 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 97a2704202cf7c20c1998d2c0d93e5d4835d8afc Author: Alan Garny '' Date: Wed Jul 2 17:08:51 2014 +0200 ontological term associated with a CellML element used to erase the list of possible ontological terms '(if' there was 'one)' '(closes' '#385)' '[ci' 'skip].' commit d0400b127565d6beee254a1b82e14bc4936f356c Author: Alan Garny '' Date: Wed Jul 2 17:04:04 2014 +0200 ontological term associated with a CellML element used to erase the list of possible ontological terms '(if' there was 'one)' '(closes' '#385).' commit afa924c4af6a1cf91257ccc6149b4061aaadd35b Author: Alan Garny '' Date: Wed Jul 2 14:48:38 2014 +0200 Slight update to the user documentation '[ci' 'skip].' commit 1f44bcf56833b15377ec02e26d22bfa0780d302a Author: Alan Garny '' Date: Wed Jul 2 14:15:17 2014 +0200 Can now once again run OpenCOR from Qt Creator on Windows '[ci' 'skip].' Indeed, now that we are using 'QCoreApplication::setLibraryPaths(),' we need to provide the debug version of the Qt plugins '(when' building in debug mode of course, otherwise we need the release version of those 'files).' commit 487375ff5a08335bd404843097764cc0a832fd67 Merge: 74062e70f 6b5027cb9 Author: Alan Garny '' Date: Wed Jul 2 11:14:48 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 74062e70f2b48c376346921263c72a1cea953517 Author: Alan Garny '' Date: Wed Jul 2 11:14:14 2014 +0200 Improved the way we determine/retrieve the plugins directory '[ci' 'skip].' As a result, we can once again run OpenCOR from Qt Creator '(from' Linux at least since we are still having a problem on Windows with the Qt platform plugin '"windows"' not being 'found).' On OS X, it 'hadn'\''t' stopped working since 'it'\''s' a bundle. Otherwise, the reason it stopped working is because of our use of 'QCoreApplication::setLibraryPaths().' commit 6b5027cb927a215c7962e753a511fd8a85e38e2d Author: Alan Garny '' Date: Wed Jul 2 10:20:13 2014 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit 9636dcae99e36fa6cb7f87f8c09017c9c38e95be Author: Alan Garny '' Date: Tue Jul 1 20:02:55 2014 +0200 Linux builds are still ''\''broken'\''' on Travis-CI, so reverting. We basically need the print support plugin in ppa:beineri/opt-qt531. commit 43a677de5adf0012a2e745056e7896317468f755 Author: Alan Garny '' Date: Tue Jul 1 19:53:31 2014 +0200 Checking whether our Linux builds are still ''\''broken'\''' on Travis-CI. commit 844b6d5548d582f69b0ea54e36755a5e48f09ffb Author: Alan Garny '' Date: Tue Jul 1 19:46:43 2014 +0200 Slight change to the way we deploy OpenCOR on Windows, now that we use 'QCoreApplication::setLibraryPaths().' Basically, the platforms plugin is now located under plugins as it should always have and like all the other Qt plugins. commit e91a8f5326bbcb87edb3e8a4efc78db4c619fa70 Author: Alan Garny '' Date: Tue Jul 1 19:17:09 2014 +0200 Now that our tests are run using 'QT_GUILESS_MAIN(),' we 'shouldn'\''t' need to run them using the offscreen platform. commit 06a70c6adbe6561b647d405aef89e6733807d11d Author: Alan Garny '' Date: Tue Jul 1 19:15:12 2014 +0200 'Don'\''t' rely on qt.conf anymore to know where to get Qt plugins from '[ci' 'skip].' This was specific to Linux and OS X. Now, we rely on 'QCoreApplication::setLibraryPaths().' Otherwise, also cleaned up / improved various things in src/main.cpp. commit 62faa7d97cf5be050e1674a9066875754555514c Author: Alan Garny '' Date: Tue Jul 1 19:02:31 2014 +0200 Argh, committed too much in the previous commit '[ci' 'skip]!' commit 7b2e5a2e0b21caab4cbd742897b77903b9ecd88b Author: Alan Garny '' Date: Tue Jul 1 18:59:06 2014 +0200 Moved settings constants in their own headers '[ci' 'skip].' commit b83de26aac89c04f7cbb3bfe500c11741eed5b38 Author: Alan Garny '' Date: Tue Jul 1 18:56:00 2014 +0200 Fixed a small memory leak '[ci' 'skip].' commit 37a7ee790f8cc5ea0c455b2fb179a5ff1c5cfeb6 Author: Alan Garny '' Date: Tue Jul 1 14:28:39 2014 +0200 Improved the SingleCell plugin by not resetting the 'view'\''s' settings when reloading a file '(closes' '#378).' commit 621d09e16038006320db747c045bdf1fbc01cdb4 Author: Alan Garny '' Date: Tue Jul 1 13:58:12 2014 +0200 Trying to avoid the $'\342\200\234QCoreApplication::applicationFilePath:' Please instantiate the QApplication object $'first\342\200\235' on OS X in Travis-CI. commit a9e41db488502eea02080b274bee910bb18d47d9 Author: Alan Garny '' Date: Tue Jul 1 13:39:06 2014 +0200 Trying to avoid the $'\342\200\234QCoreApplication::applicationFilePath:' Please instantiate the QApplication object $'first\342\200\235' on OS X in Travis-CI. commit 9db90ffd9219bd0a2a6552a48f0453e42204e243 Author: Alan Garny '' Date: Tue Jul 1 13:22:33 2014 +0200 Fixed a small issue with an external change to a file resulting in two dialog boxes if the file is modified '(closes' '#382).' commit 481637af7533dc5521ebf63e1ea61c5a551773d2 Author: Alan Garny '' Date: Tue Jul 1 13:18:27 2014 +0200 Fixed the issue with 2+ external changes to a file resulting in the user being prompted twice for its reloading '(closes' '#379).' commit 8346e753af1f5e635f860f26bbd30ca8b23339ad Author: Alan Garny '' Date: Tue Jul 1 13:09:37 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7542dbf92198f54fc218744c68c6d3c2e9de7149 Author: Alan Garny '' Date: Tue Jul 1 00:29:58 2014 +0200 Trying to optimise our Travis-CI script. The idea is that if something fails, then we 'don'\''t' do the rest. commit d5b20032f785b4779b91c5d970b787a5575a01fe Author: Alan Garny '' Date: Tue Jul 1 00:19:57 2014 +0200 Done with getting the OS X build to succeed again on Travis-CI. In the end, the issue was that our new tests strategy requires deploying '(and' cleaning 'up)' various Qt plugins. Now, the problem when installing Qt 5 with brew, the resulting Qt 5 files had a 444 right accesses, which means that we 'couldn'\''t' clean them, etc. So, the solution was simply to change their right accesses to 755, but I 'hadn'\''t' realised that /usr/local/opt/qt5 is actually a symbolic link, so we 'can'\''t' change right accesses on it and instead we need to change them on '/usr/local/opt/qt5/*.' From there, 'everything'\''s' 'fine!' commit cc60f4543c76e6386dc3d7578bbcff581967d27f Author: Alan Garny '' Date: Mon Jun 30 23:16:54 2014 +0200 Finally got the OS X build to succeed again on Travis-CI. So, one final test to make sure that I got things right. commit fd8697d78eda85795146a6f12c7427b4637baa2a Author: Alan Garny '' Date: Mon Jun 30 22:47:18 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit e193da4634200df5e2e338b6c9fa5a247424604e Author: Alan Garny '' Date: Mon Jun 30 22:27:53 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit ce75524e7f5164deddc109703b2f98021600fe74 Author: Alan Garny '' Date: Mon Jun 30 22:08:51 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 95651010246a677a8dd24f424b141085d997b4c6 Author: Alan Garny '' Date: Mon Jun 30 21:48:47 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit bcfff4124a440782ec4af067d6b71194cd87ccde Author: Alan Garny '' Date: Mon Jun 30 21:13:17 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 12b3aeea78f45079d9dba9227fb5a53c35a6c5ad Author: Alan Garny '' Date: Mon Jun 30 20:41:54 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit e95e092ee7b28bf745ca81dc6853b503817a8e85 Author: Alan Garny '' Date: Mon Jun 30 20:23:07 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 27a1d1aa1ef5ca85dccfea6aac2328683d3008ac Author: Alan Garny '' Date: Mon Jun 30 19:04:43 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 3a21e73b1d90087334c92cd9ed5813849f8a5952 Author: Alan Garny '' Date: Mon Jun 30 16:04:01 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 032fa35f3494df8f5161d3156d8f8c5f64082d8b Author: Alan Garny '' Date: Mon Jun 30 15:55:33 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit a89599cf6e365edfeaee3cdb5afb3a950dc46d36 Author: Alan Garny '' Date: Mon Jun 30 15:46:38 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit a3bc48ed7087773457a5e356b0ab9f8045b2cf72 Author: Alan Garny '' Date: Mon Jun 30 15:38:17 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 93c7d7fc779eff8d345a425a5e472ea15739b676 Author: Alan Garny '' Date: Mon Jun 30 15:26:11 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 12fff76a5825226f706bd89e1dafb5c75718126c Author: Alan Garny '' Date: Mon Jun 30 15:22:41 2014 +0200 Checking why the OS X build now fails on Travis-CI. commit 0da185600fe05aa31e043fddf15dd242e7bd1ce7 Author: Alan Garny '' Date: Mon Jun 30 14:48:02 2014 +0200 Ping pong 'game!' The qxcb plugin is of no use when testing OpenCOR on Travis-CI. We need the offscreen plugin. So, in the end, we should probably copy all the Qt plugins to build/plugins and ensure that all plugins are available on Travis-CI '(thinking' about the cupsprintersupport plugin 'here)' '[ci' 'skip].' commit 761ab0f72bf690354ef394e58857aaaccd36dc02 Author: Alan Garny '' Date: Mon Jun 30 14:30:04 2014 +0200 Argh, we need the qxcb plugin to test OpenCOR on 'Linux!' commit 603f9a2f6bd7c286145414c6dd40aa44b9f61584 Author: Alan Garny '' Date: Mon Jun 30 14:06:06 2014 +0200 Oops, forgot that our tests are now located somewhere 'else!' commit cfeb7c008fb8d78183c334a3a08476a62b041a17 Author: Alan Garny '' Date: Mon Jun 30 13:58:27 2014 +0200 We 'don'\''t' actually need the Qt plugins to test 'OpenCOR!' commit 036ba5febba936c5ea6d377c68ee0d5016e3b981 Author: Alan Garny '' Date: Mon Jun 30 13:45:24 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit dfe1650833da63c58037e1bfd3bf532c066e7453 Author: Alan Garny '' Date: Mon Jun 30 13:41:32 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit a78c2af69df951bd29b7db6887982a628dc30df4 Author: Alan Garny '' Date: Mon Jun 30 13:39:13 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit 3bebe32b81e24c6271206bacda6612ac2ccb8bb5 Author: Alan Garny '' Date: Mon Jun 30 13:25:44 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit 88705ad19105a0cb813314c86728c1d10826ae75 Author: Alan Garny '' Date: Mon Jun 30 13:15:26 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit 242cd14c880fadd37c1d8c429da30439a9a88824 Author: Alan Garny '' Date: Mon Jun 30 13:07:17 2014 +0200 Minor updates to our developer documentation '[ci' 'skip].' commit 0cdcbe9d082a8fc9eb2f42b4fcd29d4dc3d8e2a4 Author: Alan Garny '' Date: Mon Jun 30 11:53:20 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit d13b7e185f6077d0607bc7bb6d815b1207d0ddfc Author: Alan Garny '' Date: Mon Jun 30 11:46:03 2014 +0200 Trying to find out why Travis-CI cannot copy '"/opt/qt53/plugins/printsupport/libcupsprintersupport.so"' to '"/home/travis/build/opencor/opencor/build/plugins/printsupport/libcupsprintersupport.so".' commit a70c1ede9014e0e5b52e3b90bd5216114338529f Author: Alan Garny '' Date: Sun Jun 29 18:48:40 2014 +0200 Fixed the issue with the math element of a CellML equation not getting properly cleaned up in the Raw CellML view '(closes' '#381).' commit 3441431a1a6060ece13606f3d7e0816ad3b30948 Author: Alan Garny '' Date: Sun Jun 29 18:03:30 2014 +0200 Fixed an issue with deploying third-party libraries on Windows '[ci' 'skip].' commit 73101ac2d199695e1c5519708a78d9bab11a2491 Author: Alan Garny '' Date: Fri Jun 27 20:49:42 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b545342aaa29ce3526bb86720d239edf51ba366f Author: Alan Garny '' Date: Fri Jun 27 19:22:41 2014 +0200 Continue revising our testing strategy when it comes to CMake '(on' 'Linux)' '[ci' 'skip].' commit 3fd024424fe3196c4422868c743f7f7c354e1062 Author: Alan Garny '' Date: Fri Jun 27 19:07:27 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit ef9055af86c6056c4ef8157a29d0e7845c29e9be Author: Alan Garny '' Date: Fri Jun 27 18:19:20 2014 +0200 Continue revising our testing strategy when it comes to CMake '(on' 'Windows)' '[ci' 'skip].' commit 7adbe9b4ab3cbe44ef5dedd780659c0fe1ad904d Author: Alan Garny '' Date: Fri Jun 27 18:18:40 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 91b96d1730c18cfceca2f67e55229be0e802f1ff Author: Alan Garny '' Date: Fri Jun 27 17:33:03 2014 +0200 Continue revising our testing strategy when it comes to CMake '(on' Windows/Linux this 'time).' Also some minor cleaning up '(for' OS 'X).' '[ci' 'skip]' commit 5f74728e2e23f0ecdc03f64a400388eb5ebf5160 Author: Alan Garny '' Date: Fri Jun 27 17:09:42 2014 +0200 Improved our building process with Xcode. Also revised our testing strategy when it comes to CMake. '[ci' 'skip]' Regarding our testing strategy, it works fine on OS X, but it now need to be tested '(and,' most likely, 'fixed)' on Windows and Linux. commit deba7a1ba2e2eba375c7feb89924abda7433810c Author: Alan Garny '' Date: Fri Jun 27 14:00:12 2014 +0200 Fixed some minor issues reported by Xcode '[ci' 'skip].' commit 1fff6f0cd4454e4d7b30796e5908b9a80beb1e4f Author: Alan Garny '' Date: Fri Jun 27 11:30:51 2014 +0200 Some work on checking packaging now that we use Qt 5.3.x '(#376)' '[ci' 'skip].' commit 4c40b004d6e67a1d12d2b1aa1112b6c85882c74d Author: Alan Garny '' Date: Fri Jun 27 10:32:51 2014 +0200 Some work on checking packaging now that we use Qt 5.3.x '(#376)' '[ci' 'skip].' commit 8461bfb41c8d71c97c98c943c632bfa4c712a950 Author: Alan Garny '' Date: Thu Jun 26 17:49:08 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit cc00c8b509dee4db302d18b0fff7f3b1b68a657a Author: Alan Garny '' Date: Thu Jun 26 16:04:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d4b1831ec6d2259d7786ab8e9d53e538cd63934 Author: Alan Garny '' Date: Thu Jun 26 15:53:30 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 39152bc83e736c5e2ad5c8db52fcd7d846537d68 Author: Alan Garny '' Date: Thu Jun 26 13:22:08 2014 +0200 Done with upgrading our '(third-party)' binaries, now that Qt 5.3.1 has been released '(closes' '#380)' . The issue with Qt 5.3.1 on Linux has been filed '(see' 'https://bugreports.qt-project.org/browse/QTBUG-39859).' commit dcfeb1a359372c2f7103ccc76cb0b07fe84b5ef2 Author: Alan Garny '' Date: Thu Jun 26 10:23:17 2014 +0200 Some work on upgrading our '(third-party)' binaries, now that Qt 5.3.1 has been released '(#380)' '[ci' 'skip].' There seems to be an issue with the EGL library not being found on Linux. So, right now, we only have new binaries for Windows and OS X. commit 2fdc49e9845846b001cb682542972d3b6369bcd7 Author: David Brooks '' Date: Thu Jun 26 17:30:25 2014 +1200 Fix typo. commit 622fd706724f687475786c5d541442b175f23e60 Merge: 991f9cbeb 8bc27ce4a Author: David Brooks '' Date: Wed Jun 25 13:23:04 2014 +1200 Merge branch ''\''master'\''' into dataplugin commit 991f9cbebef7c0892d360ab276589f6d748c69d3 Author: David Brooks '' Date: Wed Jun 25 13:19:25 2014 +1200 Rework CoreDatastore classes to use '`double[]`' arrays instead of vectors to store data 'points;' pass in the index of where to store a 'point;' and '(important)' put code directly into the header file. These changes half the execution time compared to the initial implementation. commit 8bc27ce4a7a0e939c27376be7b7f383f716201eb Author: Alan Garny '' Date: Sat Jun 21 18:38:40 2014 +0200 Trying a different way to handle qt.conf '[ci' 'skip].' The reason is that on Linux '(Ubuntu' 14.04 LTS at 'least),' qt.conf $'doesn\342\200\231t' seem to be recognised, meaning that OpenCOR $'can\342\200\231t' load xcb. Anyway, we here use the first option mentioned at http://qt-project.org/doc/qt-5/qt-conf.html. commit f7918c44d89df1d87ecae39210c2585a42c5dded Author: Alan Garny '' Date: Sat Jun 21 18:37:45 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 769316f51c3ebeb0edbb25951e4d2c9fa303cd66 Author: Alan Garny '' Date: Sat Jun 21 15:24:42 2014 +0200 Minor cleaning up of our main and common CMake files '[ci' 'skip].' commit 75b22c3765c6a8f4772f3bdcef3689d96dd943f0 Author: Alan Garny '' Date: Fri Jun 20 19:42:37 2014 +0200 Some minor cleaning up of our CMake files. commit 16ba26a574f4397b9cf22f82ebc3403256f467e6 Author: Alan Garny '' Date: Fri Jun 20 19:28:39 2014 +0200 Some minor cleaning up of our CMake files. commit 536acf62a9c41ee0a41d2858361776f339dabf9f Author: Alan Garny '' Date: Fri Jun 20 19:00:20 2014 +0200 Some minor cleaning up of our CMake files '[ci' 'skip].' commit 60238aaf304367f2fb1874751311bcec0100c2d8 Author: Alan Garny '' Date: Fri Jun 20 18:57:10 2014 +0200 Revert '"Some' minor cleaning up of our CMake files '[ci' 'skip]."' This reverts commit 8e76fec7c484d6928175c442d90a4fcf13df80d2. commit 8e76fec7c484d6928175c442d90a4fcf13df80d2 Author: Alan Garny '' Date: Fri Jun 20 18:56:02 2014 +0200 Some minor cleaning up of our CMake files '[ci' 'skip].' commit b61226e6c35256d60dd16daf50a86a3d8fa9b9f4 Author: Alan Garny '' Date: Fri Jun 20 17:53:30 2014 +0200 Slight improvement to our 'ADD_PLUGIN()' CMake macro '[ci' 'skip].' commit 2845a3a82ec877dcb98e0dae6b7ab411d63a0315 Author: Alan Garny '' Date: Fri Jun 20 17:51:04 2014 +0200 Some minor cleaning up. commit 016e8a8166bc8d26a68e4318cfeab8b3cec0a789 Author: Alan Garny '' Date: Fri Jun 20 17:15:43 2014 +0200 Some work on adding a list to the Core CellML editing plugin '(#360).' commit 0382695d915c08683f54b4d7263b20269277dc3b Author: Alan Garny '' Date: Fri Jun 20 16:08:19 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b1c105e865f15215956ca41d3e5212c6834a346d Author: Alan Garny '' Date: Fri Jun 20 15:26:46 2014 +0200 Done remember which modes/views are selected when no files are opened '(closes' '#366).' commit ef19576ca7e4300e6548e73341599b895dd285a8 Author: Alan Garny '' Date: Fri Jun 20 15:04:58 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 013a46c51ecfe8df608cc619d3c41977ee0fd25d Author: Alan Garny '' Date: Fri Jun 20 14:03:30 2014 +0200 Only allow the master branch to be built by Travis-CI '[ci' 'skip].' commit aeae726a8e4c85ee277c400cc8f6199b96268b0e Author: Alan Garny '' Date: Fri Jun 20 13:46:22 2014 +0200 Slight update to our user documentation '[ci' 'skip].' commit 8de8f59ee45fc89879f5a4836b4717dd08629172 Author: Alan Garny '' Date: Fri Jun 20 13:25:37 2014 +0200 Packaging now accounts for the fact that Qt is now at version 5.3.0 '(closes' '#375)' '[ci' 'skip].' commit 6822165d5d4767d53adb3f46c0fa48c98d6b5b6d Author: Alan Garny '' Date: Fri Jun 20 11:51:24 2014 +0200 Can properly show itself on Linux and OS X '(closes' '#126)' '[ci' 'skip].' This was an issue with Qt, but this got fixed in Qt 5.3.0 and is now working fine on both Linux and OS X. commit 2fab053bb28882a37c5871d0ae0e9ec88ee9bf6a Author: Alan Garny '' Date: Fri Jun 20 11:25:38 2014 +0200 Ok, done with our Travis-CI 'script!' commit 8ef057c83f3a63f358cf9fbbe5797e460c7841f1 Author: Alan Garny '' Date: Fri Jun 20 11:22:36 2014 +0200 Argh, in fact, it was bc that 'wasn'\''t' 'available!' commit 0430bc56722981e7677fee20ad227370ea51d301 Author: Alan Garny '' Date: Fri Jun 20 11:14:57 2014 +0200 Argh, it would seem that we really need to export PROCS in our Travis-CI script. commit 3d1211459110f16cea3b33a3eaf3d2b96e7fd12e Author: Alan Garny '' Date: Fri Jun 20 11:10:18 2014 +0200 Just for testing since the Linux builds 'don'\''t' work anymore on Travis-CI. commit 0481255290df68567cd6ab2a68a89fb702bc0b88 Author: Alan Garny '' Date: Fri Jun 20 10:50:35 2014 +0200 Slight improvements to our Travis-CI script. Some Linux builds would fail because we were trying to use the maximum number of virtual CPUs while we probably ought to use the maximum number of physical CPUs. commit a91f1fa38e4b258c89a721a8b344a0b963f74b0e Author: Alan Garny '' Date: Fri Jun 20 10:25:37 2014 +0200 Done with 'IDASetStopTime()' in the IDA plugin '(closes' '#374).' commit d16fbc98dd1d67f3e57bd66c8363d10277b072d6 Author: Alan Garny '' Date: Fri Jun 20 10:22:56 2014 +0200 Done with 'IDASetStopTime()' in the IDA plugin '(closes' '#374).' commit 5041d2c69ca17b54374013662fbdad704b7e7520 Author: Alan Garny '' Date: Fri Jun 20 10:19:10 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a600edbd01e9a47c7e8cf961ee556eb612d9ff73 Author: Alan Garny '' Date: Fri Jun 20 10:06:03 2014 +0200 Minor update to our user documentation '[ci' 'skip].' commit a807be70c7c1e7c02e8cf9d39b45dd0d984e8cff Merge: 385c67982 dd04b51ae Author: David Brooks '' Date: Fri Jun 20 08:33:48 2014 +1200 Merge branch ''\''master'\''' into dataplugin commit dd04b51aec61318680f01b1389266f58559ea88c Author: Alan Garny '' Date: Thu Jun 19 15:29:11 2014 +0200 Fixed the issue about not being able to build OpenCOR using Xcode on OS X '(closes' '#373).' commit f703f8f7fa97da3b16f174cc3d70784ef7d221bd Author: Alan Garny '' Date: Thu Jun 19 14:48:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3ab4c1d87c8cc265266c95b6faf59d6bc6e6e27f Author: Alan Garny '' Date: Thu Jun 19 14:31:11 2014 +0200 Slight improvements to our common CMake file. commit 6eb8ced4f9cc77764b7609ae8cdd80be24d34ae2 Author: Alan Garny '' Date: Thu Jun 19 13:50:38 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit bf371abc1348521483be6adbc00a3e6ed00b1bb7 Author: Alan Garny '' Date: Thu Jun 19 13:47:44 2014 +0200 Fixed a small issue with our 'run[tests].bat' files '[ci' 'skip].' commit 64b057845888b82e507ee561053e953260ebf086 Author: Alan Garny '' Date: Thu Jun 19 13:47:03 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 385c67982f7a19d34ae05d3622b55df2799b467e Author: David Brooks '' Date: Thu Jun 19 11:43:52 2014 +1200 Use Qt classes instead of STL for data plugin. commit 5721753a724e78b0df7299539231e340fd7f3f4f Author: David Brooks '' Date: Thu Jun 19 11:29:47 2014 +1200 Add methods to retrieve a 'DataVariable'\''s' metadata. commit ab23fcf20a3ed478d6bd9f0a7ff6d8dcccbf5518 Author: David Brooks '' Date: Thu Jun 19 11:28:48 2014 +1200 Allow for uninitialised vectors in simulation results. commit 967439e2ffc0549f2fcf16b693e3048a0ad4f4c5 Author: Alan Garny '' Date: Wed Jun 18 18:02:29 2014 +0200 Done upgrading LLVM from version 3.4.1 to version 3.4.2 '(closes' '#372).' commit 9a2c7580eab59033f71f66dc0bc8469dcc94efd6 Author: Alan Garny '' Date: Wed Jun 18 17:54:53 2014 +0200 Done upgrading LLVM from version 3.4.1 to version 3.4.2 '(closes' '#372).' commit 7d652d462430e33079a487a1b61716331155d9bc Author: Alan Garny '' Date: Wed Jun 18 15:38:08 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3470dcade251a24c97bd9255f7b824a0a05b0508 Author: Alan Garny '' Date: Wed Jun 18 15:34:44 2014 +0200 Some work towards upgrading LLVM from version 3.4.1 to version 3.4.2 '(#372)' '[ci' 'skip].' commit cceba8bcb6cdb0d5b16cca33ff7f931006a75270 Author: Alan Garny '' Date: Wed Jun 18 11:12:40 2014 +0200 Slight update to the LLVM README.txt file since we now support building OpenCOR with ninja '[ci' 'skip].' commit ede2a64836a59a31a2ca88bb23f9dc7286bfde7c Author: David Brooks '' Date: Wed Jun 18 11:08:32 2014 +1200 CSV export is WIP $'\342\200\224' remove historical code. commit 47fb30685e70d471826a34559eb0911c43962aa7 Author: David Brooks '' Date: Wed Jun 18 11:07:48 2014 +1200 Tweak indentation. commit 772eaf3ca6290efd178c8779f56f303d371b4579 Author: David Brooks '' Date: Wed Jun 18 11:06:55 2014 +1200 Set uri, units, and label of data variables. commit a83fdd1113293aba3e39b036b951e99147ee7c3d Author: David Brooks '' Date: Wed Jun 18 11:00:57 2014 +1200 Rename '`DataStore`' to '`DataSet`' as the class represents a collection of data variables that may be held in a store '(`DataStore`' will then represent the class of 'stores).' commit e318e090dd380462b8ecf8073ddb29765852807d Author: David Brooks '' Date: Wed Jun 18 10:54:17 2014 +1200 Remove Unicode file mark. commit ce2614fda7ad1f3a122efb53bcc62f416b150cfa Author: Alan Garny '' Date: Tue Jun 17 19:19:39 2014 +0200 Slight update to the developer documentation, now that we support building with Ninja '[ci' 'skip].' commit 57e1e7d9d9e07a3476e1303981f110620a224cad Author: Alan Garny '' Date: Tue Jun 17 18:53:14 2014 +0200 Done with supporting building OpenCOR with Ninja '(closes' '#364).' I thought our combined use of 'ADD_CUSTOM_COMMAND()' and 'ADD_CUSTOM_TARGET()' to add a plugin binary would work on all three platforms, but it only works on OS 'X!' So, going for 'EXECUTE_PROCESS()' instead. In the end, $'it\342\200\231s' an acceptable solution since this kind of files $'doesn\342\200\231t' have dependencies. commit 16b7dacbfad22e7e93b54a6e8990d6f743f2c1b3 Author: Alan Garny '' Date: Tue Jun 17 18:35:36 2014 +0200 Done with supporting building OpenCOR with Ninja '(closes' '#364).' commit 3fc00f3b72173a87d97841cc623b2890bc08eddb Author: Alan Garny '' Date: Tue Jun 17 18:20:27 2014 +0200 Done with supporting building OpenCOR with Ninja '(closes' '#364).' commit 4f517ce12e643f7adc65184174715e191a671fd1 Author: Alan Garny '' Date: Tue Jun 17 18:00:23 2014 +0200 Some work towards supporting building OpenCOR with Ninja '(#364)' '[ci' 'skip].' Not only does this work with Ninja '(on' Linux and OS X since it was already working fine on 'Windows),' but $'it\342\200\231s' also neater. commit d19bbaa31d3badd46b936f6b52bf6c0bcc2cdfe6 Author: Alan Garny '' Date: Tue Jun 17 17:20:27 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0d445930d9c9a635712addf1e48ba77909aed043 Author: Alan Garny '' Date: Tue Jun 17 16:35:40 2014 +0200 Some work towards supporting building OpenCOR with Ninja '(#364)' '[ci' 'skip].' commit 10429fd4232debfca8a790cfb5b24c174c104dc3 Author: Alan Garny '' Date: Tue Jun 17 16:25:20 2014 +0200 Revert '"Some' minor cleaning up '[ci' 'skip]."' This reverts commit b66ae7e0bbf2faf6c22d26e0607084467e048c8a. commit b66ae7e0bbf2faf6c22d26e0607084467e048c8a Author: Alan Garny '' Date: Tue Jun 17 16:19:12 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2fb080803a5cb5d3fe5d56f7d2edf6355d7ef516 Author: Alan Garny '' Date: Tue Jun 17 16:03:22 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 97939902cf578c41451945bcf6e2b817c53f081a Author: Alan Garny '' Date: Tue Jun 17 15:58:36 2014 +0200 Some work towards supporting building OpenCOR with Ninja '(#364).' commit 917f67e242ffa431918f0190a32964e7998839a8 Author: Alan Garny '' Date: Tue Jun 17 15:52:36 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit fdd71dcd3730fd3419d714eb933e0b55098ae018 Author: Alan Garny '' Date: Tue Jun 17 11:34:43 2014 +0200 Slight improvements to our Windows batch files '[ci' 'skip].' commit 1143a64e8884e553fc55538dd4bbad17bf67c62f Merge: 710e57059 56c17f8f0 Author: David Brooks '' Date: Tue Jun 17 13:00:25 2014 +1200 Merge branch ''\''master'\''' into dataplugin commit 56c17f8f0fef1a3c090034c3697e5e2664bf5337 Author: Alan Garny '' Date: Mon Jun 16 18:18:54 2014 +0200 Done with making it an option to use 'CVodeSetStopTime()' '(closes' '#371).' commit c128197ceaf4693eb23f4c491164e7fbe11875f5 Author: Alan Garny '' Date: Mon Jun 16 17:56:46 2014 +0200 Some work on making it an option to use 'CVodeSetStopTime()' '(#371).' commit 1e0282b2cf8cea0da60d2db5160c39151cde4337 Author: Alan Garny '' Date: Mon Jun 16 17:54:24 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit fbc17ebb2f719f9464cee4b940a290dcf5f06542 Author: Alan Garny '' Date: Mon Jun 16 17:39:22 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 70f53c3d169984e0ba84e6fbaff6b0452f6f621a Author: Alan Garny '' Date: Mon Jun 16 17:38:49 2014 +0200 Manually reverting some changes which should never have been committed in the first place '[ci' 'skip]...' commit d753e72dee2efdeeabd6a4ac328e2dc5a44da923 Author: Alan Garny '' Date: Mon Jun 16 17:31:46 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d6c98476b77812be72e0d95289975e0b7fd6df23 Author: Alan Garny '' Date: Mon Jun 16 17:27:00 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 50ac3affd686c283d7a1081459388528b0eda554 Author: Alan Garny '' Date: Mon Jun 16 13:58:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5ac8b5bce8450aaef0b76bf7478b47843b21e558 Author: Alan Garny '' Date: Mon Jun 16 13:46:42 2014 +0200 Some work towards using CMake 3.0.0 to build OpenCOR '(#365).' commit 81b77ee7cb635d586cdfd27226bfbb0b8139ae8d Author: Alan Garny '' Date: Mon Jun 16 13:45:57 2014 +0200 Some work towards using CMake 3.0.0 to build OpenCOR '(#365).' commit 710e570593729e59b763aba7f4ec088f187fde1a Author: David Brooks '' Date: Mon Jun 16 21:01:46 2014 +1200 Add '`size()`' for a $'DataVariable\342\200\231s' buffer and $'don\342\200\231t' return size when saving points. commit 91b592a91957bcbfa63041ee7892b09a838bab4c Author: David Brooks '' Date: Mon Jun 16 20:54:06 2014 +1200 Use renamed methods from DataStore. commit b9d3326639f8e744081e876cd14453050b14c2c0 Author: David Brooks '' Date: Mon Jun 16 20:52:59 2014 +1200 Rationalise names of 'methods;' return '`vector`' when holding points, not a starting index into the $'store\342\200\231s' internal buffer. commit 88a8dc7b62b819bfe5dbe7cc677b5976c86adadf Author: Alan Garny '' Date: Sun Jun 15 17:16:37 2014 +0200 Done with supporting both Linux and OS X with Travis-CI '(closes' '#369).' commit ae6bbb4d9dd978fde0e1900c7157b3ddb8805d16 Author: Alan Garny '' Date: Sun Jun 15 16:47:26 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 4377eab07ca2d9c56b6a0840f5d1052f29faccdd Author: Alan Garny '' Date: Sun Jun 15 16:43:53 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 767fab820a1519c6a22f1bfee71e816afab1a05c Author: Alan Garny '' Date: Sun Jun 15 16:40:37 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 36480baef23c07416b28d4bc88d4ec330e8406bf Author: Alan Garny '' Date: Sun Jun 15 16:34:58 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 506881ee348a148b377833640389a49a1410f845 Author: Alan Garny '' Date: Sun Jun 15 16:30:35 2014 +0200 Done with using 'CVodeSetStopTime()' in the CVODE solver '(closes' '#370).' commit ecc8d4dc20420501c39d8b9015bdddd3fc45a7a1 Author: Alan Garny '' Date: Fri Jun 13 17:58:56 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 9f6e706c7e73a8a402a3c25b22605c6fa070c5e3 Author: Alan Garny '' Date: Fri Jun 13 17:54:51 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 6d3f8eb5e56719570703ecb7927a558ced00ea47 Author: Alan Garny '' Date: Fri Jun 13 17:51:45 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 88f3b88d7ae019c461959e2f927a73938b5b086c Author: Alan Garny '' Date: Fri Jun 13 17:31:36 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 1dbac15e69e9f2ee94163155a452ca97a84fdf14 Author: Alan Garny '' Date: Fri Jun 13 17:08:41 2014 +0200 Some work on supporting both Linux and OS X with Travis-CI '(#369).' commit 831197324fd003aa36487c9cc7f0858b2b1a0e78 Author: Alan Garny '' Date: Fri Jun 13 17:04:27 2014 +0200 Done with getting our Travis-CI script to work with OS X '(closes' '#363).' commit f5f09ca9a37eaf463893919cc1358e3a6e3a3812 Author: Alan Garny '' Date: Fri Jun 13 16:51:12 2014 +0200 Done with fixing an issue with CellMLSupport crashing OpenCOR on OS X when exiting '(closes' '#368)' '[ci' 'skip].' commit a82d318bfd484a6077bcab6e27832296832e3141 Author: Alan Garny '' Date: Fri Jun 13 16:25:48 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 481129ebde3f2d8a50fee3f2f385732649b094cb Author: Alan Garny '' Date: Fri Jun 13 15:56:50 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit f2ce716e2d562c15f64b9029d175ac8e3290199d Author: Alan Garny '' Date: Fri Jun 13 15:35:55 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 0c622cb2166528bae1053e147e95e1e751650155 Author: Alan Garny '' Date: Fri Jun 13 15:16:22 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit e43c7a98a094fd511c174bfcc11dfe71615247c8 Author: Alan Garny '' Date: Fri Jun 13 15:13:03 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b879efa7b6ef38786ea6a0cb6d5eb6b5908fa23d Author: Alan Garny '' Date: Fri Jun 13 15:09:40 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 288d11c0b0548667712340522c7bc717203f0ba5 Author: Alan Garny '' Date: Fri Jun 13 15:02:17 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 85f0c6879d74065b194e42381f5a99c4faf9bef9 Author: Alan Garny '' Date: Fri Jun 13 14:54:35 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 6d7c99fa0d030e44c10fa5d5ed62168a21eee7a1 Author: Alan Garny '' Date: Fri Jun 13 14:50:36 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 87ff3ce91a503f72790a01456bfbb8a5dbaf4e15 Author: Alan Garny '' Date: Fri Jun 13 14:47:35 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit dd17c5230ccaa15678975d17bfaea648ea636677 Author: Alan Garny '' Date: Fri Jun 13 14:46:58 2014 +0200 Some work on trying to get our Travis-CI script to work with OS X '(#363).' commit 2641c243870cfe0bfd4561b78a8c9b4153f8ec97 Author: Alan Garny '' Date: Fri Jun 13 14:40:02 2014 +0200 Dione with using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(closes' '#367).' commit aee2ef64bc69a55195901779ca442a668d6b3aca Author: Alan Garny '' Date: Fri Jun 13 14:37:16 2014 +0200 Dione with using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(closes' '#367).' commit a05eff2c00db370674cc3c37f8aec1754cd5b602 Author: Alan Garny '' Date: Fri Jun 13 14:34:00 2014 +0200 Dione with using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(closes' '#367).' commit a1c5b7d4101e447884fb9a4e0f4839ec91afa426 Author: Alan Garny '' Date: Fri Jun 13 14:25:01 2014 +0200 Dione with using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(closes' '#367).' commit b3428219a57310dc00d4b5a3e0a55182dc8ff894 Author: Alan Garny '' Date: Fri Jun 13 14:22:52 2014 +0200 Dione with using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(closes' '#367).' commit 85092bb48021423b7904fdf2ed86e094baa46606 Author: Alan Garny '' Date: Fri Jun 13 14:10:31 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 8f447d15323f1b5b3ac0df08408d334ca0add1ff Author: Alan Garny '' Date: Fri Jun 13 14:09:10 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit df64be86c97aaa2d543f1daac4b1a99910ab92bf Author: Alan Garny '' Date: Fri Jun 13 13:55:18 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 000714cdbc49df1554ed90fc030bba6c76b35b6a Author: Alan Garny '' Date: Fri Jun 13 13:47:02 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 8ce448ea5cebfd9fd77c98e7fd8b4a0c06f9c9da Author: Alan Garny '' Date: Fri Jun 13 13:42:04 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 63e5c58ce247d22ad055a16e6421f0f2898f8a4c Author: Alan Garny '' Date: Fri Jun 13 13:33:54 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 837658cabf477856842a2624c9acd0a25e833afa Author: Alan Garny '' Date: Fri Jun 13 13:29:18 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 0dd684e35042524bd4576cd3c3fa8844b571f7f4 Author: Alan Garny '' Date: Fri Jun 13 13:19:32 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 58781e97efef65995bf47048ac5292ccde18310b Author: Alan Garny '' Date: Fri Jun 13 13:10:14 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 602ab4cbc3a8499722978e84f7d92db27807d8e5 Author: Alan Garny '' Date: Fri Jun 13 13:05:58 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit ba49318b530231bd03306a47eb62cc7257f0ae3a Author: David Brooks '' Date: Fri Jun 13 21:58:59 2014 +1200 Use a DataStore to hold a $'simulation\342\200\231s' results. commit aafa722f55914750e7b21d07b709398bb73fbe9d Author: Alan Garny '' Date: Fri Jun 13 11:58:43 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit c2884089d7fb043b4dac80d2e4191dca328cf68e Author: Alan Garny '' Date: Fri Jun 13 11:55:06 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit a6f1359aae0daebad24e744dc3b815488c181308 Author: David Brooks '' Date: Fri Jun 13 21:54:24 2014 +1200 Improve readability by underlying method names. commit 27cc68d29d53ccef8fe9908691a10bc13ed2726e Author: David Brooks '' Date: Fri Jun 13 21:53:11 2014 +1200 Use our own types for sizes and counts. commit bb71912e4c0408e652851bc27542ddc3e209556d Author: David Brooks '' Date: Fri Jun 13 21:52:17 2014 +1200 Retrieve a variable from a store by its index. commit 757460823a96573fd430c84b9564b90c1eb6fe97 Author: David Brooks '' Date: Fri Jun 13 21:50:59 2014 +1200 Return the '(start)' index into a $'store\342\200\231s' variables when holding elements and getting a new store variable. commit bb6a8c261d81c972001a19bf983afd685a45d2bb Author: David Brooks '' Date: Fri Jun 13 21:47:54 2014 +1200 Get an $'variable\342\200\231s' data array and an individual element. commit 9cc616f2c08590e2065dc36f7983608ed993b792 Author: David Brooks '' Date: Fri Jun 13 21:46:36 2014 +1200 Return index of where a value is stored. commit 7c1fa57e7b209d5744e0747e04d0c2d7ad2362d2 Author: Alan Garny '' Date: Fri Jun 13 11:42:22 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 99ba8f6d3cbcdf09b824f273929bc87668b132de Author: Alan Garny '' Date: Fri Jun 13 11:36:33 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit ae4be11500593f5c7cf7ab1e40b1211935132e99 Author: Alan Garny '' Date: Fri Jun 13 11:33:56 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit a325d2a640104c48a3aeb943a92f09ed8c27e5d9 Author: Alan Garny '' Date: Fri Jun 13 11:30:38 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 0c4a20c25f24e93238592cf2fec97f94fe1ca637 Author: Alan Garny '' Date: Fri Jun 13 11:26:58 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 8ad3042f85f83760d6888184f9a5e49fa8dbb562 Author: Alan Garny '' Date: Fri Jun 13 11:24:12 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit f9a9ef4d6fbebbc97af3290315286aa05439fa14 Author: Alan Garny '' Date: Fri Jun 13 11:18:21 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit a631c7820b79f8a152d401fc9a0293a9a69474a2 Author: Alan Garny '' Date: Fri Jun 13 11:14:47 2014 +0200 Some work on using the CMake binaries '(in' 'Travis-CI)' rather than recompiling them ourselves '(#367).' commit 742b9601c2e2cbe13f00b852d7e0a208450fb22d Author: Alan Garny '' Date: Fri Jun 13 10:55:21 2014 +0200 Oops, forgot to update the minimum required version of CMake '(#365).' commit 39068ae9908d469daca4828da210cb1f8deed37f Author: Alan Garny '' Date: Thu Jun 12 16:25:08 2014 +0200 Done using CMake 3.0.0 to build OpenCOR '(closes' '#365).' commit 961e32ff0a55e8bbfd6796432dd7b109d94a902b Author: Alan Garny '' Date: Thu Jun 12 15:49:05 2014 +0200 Quickly going back to our original Travis-CI script as we want to upgrade to CMake 3.0.0. commit f0f320d5e4f5dfd16b447ff287650227fe0d4ae1 Author: Alan Garny '' Date: Thu Jun 12 15:32:00 2014 +0200 Travis-CI: some work on trying to get our script to work with OS X '(#363).' commit 4beb2879b1eb94d405ab6711290b30cff0a7d2c1 Author: Alan Garny '' Date: Thu Jun 12 14:49:03 2014 +0200 Travis-CI: adding OS X as one of the OS targets '(in' addition to 'Linux).' commit 620a18254842e788bdb883eeaeff648777f1d30d Author: Alan Garny '' Date: Thu Jun 12 14:41:00 2014 +0200 Some minor cleaning up. commit 8a222e024f86fddf83486c3b44af7b7febbab5e6 Author: Alan Garny '' Date: Thu Jun 12 11:51:49 2014 +0200 Travis-CI: use the 'OS'\''s' default compiler. Indeed, to build a release version of OpenCOR using Clang on Linux fails. There is an issue with __extern_always_inline being unknown while $'it\342\200\231s' all fine when building a debug version. Anyway, no time to investigate, not to mention that we always use the default compiler on a given OS, $'so\342\200\246' commit 4732553edf2a0d86c831ad4460be1989b6bd54f0 Author: Alan Garny '' Date: Thu Jun 12 11:23:35 2014 +0200 Travis-CI: add Clang as a compiler '(in' addition to 'gcc).' commit 26a5211c7364c6314fb4629a3433fe126b30d456 Author: David Brooks '' Date: Thu Jun 12 12:55:22 2014 +1200 Define a '`Datastore`' plugin category and a '`CoreDatastore`' plugin. commit fa6163f93e739b98df2f40a67f3b0e9fb220015f Author: Alan Garny '' Date: Wed Jun 11 18:50:15 2014 +0200 Done fixing an issue with closing the last file '(through' the Core CellML editing 'plugin)' and reopening it reseting all the settings '(closes' '#362).' We clear all the user settings as late as possible. commit e5d9ad841acc4d63c5e1eff76cea4a70ce90c19c Author: Alan Garny '' Date: Wed Jun 11 18:48:49 2014 +0200 Some work on fixing an issue with closing the last file '(through' the Core CellML editing 'plugin)' and reopening it reseting all the settings '(#362).' commit e7b13e57320208d9a76762d6cfdbe3909d01f886 Author: Alan Garny '' Date: Wed Jun 11 18:00:49 2014 +0200 Some minor cleaning up. commit 5ba17c7b9b46e278263b881d3d59c681ff1d5ff9 Author: Alan Garny '' Date: Wed Jun 11 16:17:30 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7d9c90539dfed62194d89709cb623a01544b987e Author: Alan Garny '' Date: Wed Jun 11 15:25:37 2014 +0200 Some work on adding a list to the Core CellML editing plugin '(#360).' commit 5a42affab97cbd27de43bdf31b516c460c419190 Author: Alan Garny '' Date: Wed Jun 11 14:38:24 2014 +0200 Some work on adding a '"CellML' 'Validation"' action to the Core CellML editing plugin '(#361).' commit 937b9d589c3c8fb60d9650fa8fbd9379543f273c Author: Alan Garny '' Date: Wed Jun 11 14:14:44 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 8c3c0d8493a3c92333239b7fc2a64156f50641cf Author: Alan Garny '' Date: Wed Jun 11 13:52:55 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b03453a62456daa0c3a566d35d60f871c9287944 Author: Alan Garny '' Date: Tue Jun 10 19:01:52 2014 +0200 Slight improvement to our editor list '(#360)' '[ci' 'skip].' commit 7096a5ae3351dac3527d5377a43392938600e69e Author: Alan Garny '' Date: Tue Jun 10 18:50:55 2014 +0200 Some improvements to some of our editing plugins. commit 83ccfc0a79373fcde3d1138b2e7178cc65754d70 Author: Alan Garny '' Date: Tue Jun 10 18:34:20 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit e442e73b189643062f23bfc988a27bb9c92989e7 Author: Alan Garny '' Date: Tue Jun 10 18:29:42 2014 +0200 Some slight improvements to some of our editing plugins. commit a27d0e360c51497e31bd0ce71155ad08a9bb9dd3 Author: Alan Garny '' Date: Tue Jun 10 18:19:28 2014 +0200 Quite a lot of cleaning up and, as a result, improved code. commit fc0191114e961646b0513a610f269dd1221fb0d4 Author: Alan Garny '' Date: Tue Jun 10 17:28:29 2014 +0200 We are sometimes having problems building OpenCOR on Travis-CI, so if the build machine has n processors, then we now run n-n/2 jobs simultaneously. commit f7beddb409b6700507a86b37c00a706c5146d402 Author: Alan Garny '' Date: Tue Jun 10 16:50:13 2014 +0200 Some work on adding a list to the Core CellML editing plugin '(#360).' commit 2a750e2ea8a0e4287040dc67cf56bfbf2c93af68 Author: Alan Garny '' Date: Tue Jun 10 15:19:47 2014 +0200 Some work on adding a list to the Core CellML editing plugin '(#360).' commit e49532ee9e3a83f8807c043749f12ab5343ad1eb Author: Alan Garny '' Date: Tue Jun 10 15:18:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c26cb587c2b2cc810efb2ba4df13072e34725bfc Author: Alan Garny '' Date: Tue Jun 10 15:17:01 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit c2d8bbf60bb9b4cdd5607178c260841b4a34adfb Author: Alan Garny '' Date: Tue Jun 10 14:06:42 2014 +0200 Some minor cleaning up. commit be4e027488171b4dffb2465a10e4206921231cfb Author: Alan Garny '' Date: Tue Jun 10 14:00:01 2014 +0200 Some work on adding a list to the Core CellML editing plugin '(#360).' commit 82c3880221d9a388bf144ecf644fd5ce31b44b75 Author: Alan Garny '' Date: Sun Jun 8 23:15:19 2014 +0200 Done with handling a CellML API crash when when trying to generate code for a malformed CellML file '(closes' '#340).' commit e70f950a74e5d48454bb0d2c1a490f0bf83bd4cd Author: Alan Garny '' Date: Sun Jun 8 22:21:59 2014 +0200 Done with handling a CellML API crash when when trying to generate code for a malformed CellML file '(closes' '#340).' Done with handling a CellML API crash when when trying to generate code for a malformed CellML file '(closes' '#340).' commit 246471c7a820a436d144ef5a66c129b71e128fb7 Author: Alan Garny '' Date: Fri Jun 6 16:06:40 2014 +0200 Reverted our work towards handling a CellML API crash when when trying to generate code for a malformed CellML file '(#340)' '[ci' 'skip].' commit 1747087606dc44d75512d4c96be66b7d1599137a Author: Alan Garny '' Date: Fri Jun 6 15:56:51 2014 +0200 Reverted our work towards handling a CellML API crash when when trying to generate code for a malformed CellML file '(#340).' Indeed, there was '(clearly)' a fundamental issue with the CellML API, so it really ought to be fixed there than have us handle a possible crash of the API. commit 1bd0890ff0a4422488a2d9b2ea89883a67ef5dfc Author: Alan Garny '' Date: Thu Jun 5 16:59:34 2014 +0200 Done with only copying the exact contents of the viewer '(closes' '#358).' commit 2c1eaf55713c8ca8d1111fda4bb7ae883a6437e8 Author: Alan Garny '' Date: Thu Jun 5 16:22:27 2014 +0200 Done with making the looking up of an equation more accurate in the Raw CellML editing view '(closes' '#359).' commit 427f960fb5863d0d2b5111bc634a6fdf551ec0d2 Author: Alan Garny '' Date: Thu Jun 5 14:11:39 2014 +0200 Done with fixing an issue with the viewer in the raw CellML editing view '(closes' '#357).' commit fe9fcca177413a0d544a381fa7a8b49e2b75c151 Author: Alan Garny '' Date: Thu Jun 5 13:19:42 2014 +0200 Done with fixing an issue with the viewer in the raw CellML editing view '(closes' '#356).' commit 5ccd1978fcd4a1767a45edac6568d436a85dbe59 Author: Alan Garny '' Date: Thu Jun 5 11:34:44 2014 +0200 Only allow the contents of the viewer to be copied to the clipboard when there is actually some contents. commit 16948b105726101691feed210bb4e38d571ffedc Author: Alan Garny '' Date: Thu Jun 5 10:57:01 2014 +0200 Added a tooltip to some actions. commit 2e6e2a55703a48d6666f92ea3a4f4b5e90d58405 Author: Alan Garny '' Date: Wed Jun 4 18:05:37 2014 +0200 Some minor cleaning up. commit 54bdedd2f9101f37ff83c050422b6ca47e047d3c Author: Alan Garny '' Date: Wed Jun 4 17:32:55 2014 +0200 Done with allowing the contents of the viewer to be copied to the clipboard '(closes' '#355).' commit 37178059cd5babcd31da4a9d6a41c6d87c731706 Author: Alan Garny '' Date: Wed Jun 4 11:52:10 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 4d3aad790119bf79e88f5c1923bf1bf371514657 Author: Alan Garny '' Date: Wed Jun 4 09:50:52 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a8e0f255916b3ff3a6b2030deff832f41403ef14 Author: Alan Garny '' Date: Tue Jun 3 17:40:23 2014 +0200 Minor update to the developer documentation '[ci' 'skip].' commit dc75155a066de0a4e89dcab14c9d0f5cd7e9eac3 Author: Alan Garny '' Date: Tue Jun 3 17:31:06 2014 +0200 Done using CMake options whenever possible as part of the build process '(closes' '#354).' commit 8db398417980cc36c1ce1cbd4d7b635a5ef4e4c5 Author: Alan Garny '' Date: Wed May 28 19:08:54 2014 +0200 Done with upgrading QScintilla from version 2.8.1 to version 2.8.2 '(closes' '#353).' commit 3272212d04330d5342929713566fd1e8c4194825 Author: Alan Garny '' Date: Wed May 28 18:48:25 2014 +0200 Some work towards upgrading QScintilla from version 2.8.1 to version 2.8.2 '(#353)' '[ci' 'skip].' commit fb3599e0b33f42a284ef16e1b600eb0b54db0f40 Author: Alan Garny '' Date: Wed May 28 18:40:39 2014 +0200 Argh, 'sigaction()' is not supported on Windows '(#340)' '[ci' 'skip]!' commit 5824b12416d1161272e0f9e1a7c2157c086c62d2 Author: Alan Garny '' Date: Wed May 28 18:33:25 2014 +0200 Some work towards handling a CellML API crash when when trying to generate code for a malformed CellML file '(#340)' '[ci' 'skip].' This seems to be working fine on Windows and OS X. On Linux, if we try to switch to the Simulation view for the first time '(for' the CellML file mentioned in the 'issue),' then $'it\342\200\231s' OK, but then if we switch to another view and then come back, then OpenCOR 'crashes!?' commit be151761c954f78dd606343fbb409ac644974b96 Author: Alan Garny '' Date: Wed May 28 18:28:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 5e86eccf2371a28e538c1b17a8c3364778300329 Author: Alan Garny '' Date: Wed May 28 18:08:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 085b815a8f9607c4b978fc5f1467df44f41f771c Author: Alan Garny '' Date: Wed May 28 16:46:28 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2973579d3780b58bb58fd3be2cc0659453fe7dd2 Author: Alan Garny '' Date: Wed May 28 16:17:08 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b0f5d70ec19c1de3a9b175ac120a70d782097852 Merge: 7f39abc7e d9d3372f4 Author: Alan Garny '' Date: Tue May 27 17:15:20 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7f39abc7e8feb9e151e7d054bb380f48585db522 Author: Alan Garny '' Date: Tue May 27 17:14:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d9d3372f4b72c18112a91546e0b68ddca5c6554e Author: Alan Garny '' Date: Mon May 26 08:49:52 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 91d83e69dc9b750651b9f7617ac58c1b6cac9ef5 Author: Alan Garny '' Date: Sun May 25 17:54:16 2014 +0200 Done with writing some sample plugins '(closes' '#337).' commit 1fe4d86619bd679fb029752e21527f05779521b3 Author: Alan Garny '' Date: Sun May 25 11:49:38 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit d2c54f0d12256928bbade8e276965cceaa012b1f Author: Alan Garny '' Date: Fri May 23 20:24:57 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 0af75b26183b1f14967e4f13ead7880471b97a0b Author: Alan Garny '' Date: Fri May 23 19:48:01 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit ea9620587b79c82a0bd9e912904398adade644be Author: Alan Garny '' Date: Fri May 23 18:42:44 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 87461bd62ef60c9cbc23bc1cd49c393b61b05722 Author: Alan Garny '' Date: Fri May 23 18:12:24 2014 +0200 Avoid some OS X console messages from being generated. commit 5265cd66677cc7af0965d4f333db9d1cee055188 Author: Alan Garny '' Date: Fri May 23 10:54:30 2014 +0200 Updated our Windows redistributable files '[ci' 'skip].' commit 02083aa71bebcc4bc996028fee0a991dd0471ac1 Author: Alan Garny '' Date: Fri May 23 10:36:04 2014 +0200 Some minor cleaning up. commit ab69ca73eaac9a385e961681dc4038d5a3297f71 Author: Alan Garny '' Date: Fri May 23 10:29:18 2014 +0200 Make sure that the Windows redistributable files are reachable when wanting to test OpenCOR locally. Indeed, depending on how a 'user'\''s' computer is configured, these files may or not be reachable '[ci' 'skip].' commit 29859353a9c10a1658f1bd855a82b5e67967970b Author: Alan Garny '' Date: Thu May 22 18:45:27 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit c60027f85c9863baa6926d9f661e5073d8855977 Author: Alan Garny '' Date: Thu May 22 18:21:22 2014 +0200 Minor cleaning up to our view interface. commit 29f59b70ae054a0bb3ac5572165fad4ffa01a9c0 Author: Alan Garny '' Date: Thu May 22 17:15:07 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit cde49f05b192ed533d8664f0de1097581f0a21aa Author: Alan Garny '' Date: Thu May 22 17:02:29 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 1fa5684c89359d814531a3d727cfbad71b3ea072 Author: Alan Garny '' Date: Thu May 22 16:55:01 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 4eee8e9f9410d9cb78fe448d8617262cf2a619bd Author: Alan Garny '' Date: Thu May 22 15:46:26 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 47aac104114e1d4a43a63bd29440a4c1d7e50bf7 Author: Alan Garny '' Date: Thu May 22 15:45:59 2014 +0200 Minor cleaning up to our plugin interface. commit 39dcde53f89bb2e7b7ec9a86528d1d77f544d4ef Author: Alan Garny '' Date: Thu May 22 14:58:11 2014 +0200 Simplified our view interface. commit b1db582911073d5f88e2ef8c9ed83a96b9d6845e Author: Alan Garny '' Date: Thu May 22 14:14:02 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 9bd57964831cd8e2dd0884afecb08dd5c9010936 Author: Alan Garny '' Date: Thu May 22 11:38:28 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 8cdf298073c19a17ff0ec50d906c95fdc51f3096 Author: Alan Garny '' Date: Thu May 22 11:18:38 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 089e5d92c3681f56890b5ed25538db93d56601ca Author: Alan Garny '' Date: Thu May 22 10:54:07 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 94d0895474d9d1e82a0080a8cee513d84b7b7fc8 Author: Alan Garny '' Date: Wed May 21 18:59:04 2014 +0200 Some minor cleaning up. commit 4659bb33a350559924e29425f23071433b41a86c Author: Alan Garny '' Date: Wed May 21 17:48:18 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7fef23d529903a2c3ad0f0c829f60a8117e51e98 Author: Alan Garny '' Date: Wed May 21 17:22:51 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 44bb42fa25fe157fdcdff4f64e40b420bf521e74 Author: Alan Garny '' Date: Wed May 21 16:57:30 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 0d4efb34f8efc83dd09d036fc5359bf33b3d48e0 Author: Alan Garny '' Date: Wed May 21 16:13:38 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit a0c1740f0f8d1fb58e336b4d0ec6f52640b79af0 Author: Alan Garny '' Date: Wed May 21 14:45:05 2014 +0200 Done with improving the build time of third-party libraries '(closes' '#352).' commit c54e98cf4adad9b05c5fa54739aacb3cfdbcb027 Author: Alan Garny '' Date: Wed May 21 14:10:49 2014 +0200 Some work towards improving the build time of third-party libraries '(#352)' '[ci' 'skip].' commit 6fd8499cd90e26f646ceb5b4f4de34c38801ea5f Author: Alan Garny '' Date: Wed May 21 13:47:34 2014 +0200 Some work towards improving the build time of third-party libraries '(#352)' '[ci' 'skip].' commit 2fa4b0f9cf712d62054eada95291ad810c2a92bd Author: Alan Garny '' Date: Wed May 21 13:44:22 2014 +0200 Some work towards improving the build time of third-party libraries '(#352)' '[ci' 'skip].' commit 1878264d9e3ccd2817e2d446b5dd592229295ae2 Author: Alan Garny '' Date: Wed May 21 13:33:32 2014 +0200 Some work towards improving the build time of third-party libraries '(#352)' '[ci' 'skip].' commit 4285126fa548c2f37c61753302213bb3f4011971 Author: Alan Garny '' Date: Wed May 21 11:19:37 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 045445830e10eab63f2bdacde7ef8cfb34688690 Author: Alan Garny '' Date: Wed May 21 11:09:04 2014 +0200 Some work towards improving the build time of third-party libraries '(#352).' commit 438154391aca1308ef6ced563b7cd855522e6aca Author: Alan Garny '' Date: Wed May 21 11:04:31 2014 +0200 Some work towards improving the build time of third-party libraries '(#352).' commit c9d94201bb82c0b33528618289e0531f660098bf Author: Alan Garny '' Date: Wed May 21 10:55:10 2014 +0200 Some work towards improving the build time of third-party libraries '(#352).' commit f9f546400b8ba45564093a96b5d2020d1b6903fb Author: Alan Garny '' Date: Tue May 20 19:35:52 2014 +0200 Ok, 'it'\''s' CMake 2.8.7, so still not good enough for us, so still using ''\''our'\''' version of CMake. commit 270e08582bf47e35d1aacc8dcf87f1f04f7a6f22 Author: Alan Garny '' Date: Tue May 20 19:32:48 2014 +0200 Checking which version of CMake is nowadays available on Travis-CI. commit a286a93024fe4b132cad8ae459e7af5dd331c947 Author: Alan Garny '' Date: Tue May 20 19:24:52 2014 +0200 Updated our Travis-CI script now that Qt 5.3.0 is out. commit b14b252a58d3e03cfbeaaafd189c74aeea0ab3a7 Author: Alan Garny '' Date: Tue May 20 19:20:20 2014 +0200 Updated our Travis-CI script now that Qt 5.3.0 is out. commit e87e4d5edf5c242c56052c446cc65b96f7b07ff3 Author: Alan Garny '' Date: Tue May 20 18:53:17 2014 +0200 Updated our LLVM binaries now that Qt 5.3.0 is out. commit 926c8d4d4b675d309d51c610e49d93bc094a0552 Author: Alan Garny '' Date: Tue May 20 18:08:24 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 78bcd9fd248df8cda513fd705daa4c503089851f Author: Alan Garny '' Date: Tue May 20 16:28:15 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 1b60591ee982f2cb11f46dd955578f350e4fda31 Author: Alan Garny '' Date: Tue May 20 15:55:17 2014 +0200 Fixed a small issue with our CellML file manager '(closes' '#351).' commit e8054371e2530f129c43e984203aeeb2e02f3ce0 Author: Alan Garny '' Date: Tue May 20 15:39:45 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 601a0981b1efdc1485bc1dbc2b60bdb587643adb Author: Alan Garny '' Date: Tue May 20 10:55:19 2014 +0200 Slight update to the developer documentation, now that Qt 5.3.0 and Qt Creator 3.1.1 have been released '[ci' 'skip].' commit 8f078148a409ddf9db35e246dfc8577e9e5d1d05 Author: Alan Garny '' Date: Tue May 20 10:29:46 2014 +0200 Slight update to the developer documentation, now that Qt 5.3.0 and Qt Creator 3.1.1 have been released '[ci' 'skip].' commit b26d0046240dd02c19f65cf493ba01a06a1a710f Author: Alan Garny '' Date: Tue May 20 09:59:19 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 935d665710a36db5ef89337e96aec2547dc927c9 Author: Alan Garny '' Date: Tue May 20 09:53:52 2014 +0200 Slight improvement to our file manager '[ci' 'skip].' commit 27e285d362f2638f9a650fd231b7d093e4bacde9 Author: Alan Garny '' Date: Mon May 19 18:33:03 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 5cc6a98fbbcbe9efbeef8ddd508354e1d231454f Author: Alan Garny '' Date: Mon May 19 18:21:10 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit ee82c071c6c2596d281f44f24d11e8d22f0054d7 Author: Alan Garny '' Date: Mon May 19 18:05:33 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3cc5219489230a7ecbeb269c47d1f909a90fb668 Author: Alan Garny '' Date: Mon May 19 18:03:32 2014 +0200 'Oops!' commit d5beedf60f64ccf02acc3ba429eb31fdaf0868bb Author: Alan Garny '' Date: Mon May 19 17:30:49 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 97eb2411dd1a9c9ea5e30f4d74251ead77379a6d Author: Alan Garny '' Date: Mon May 19 17:28:49 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 5da05ecbed59a210e00cf8795974327f5b53b937 Author: Alan Garny '' Date: Mon May 19 17:28:11 2014 +0200 Add support for a sample mode '(only' when building in debug 'mode),' so that we can put our Sample view in it. commit dd72dbcb8b450aadfaf057eedcdb3e65b4c6a40f Author: Alan Garny '' Date: Mon May 19 17:00:27 2014 +0200 Add support for a sample mode '(only' when building in debug 'mode),' so that we can put our Sample view in it. commit 1f9cdd9c6966ea647f9411b971bed111ac193668 Author: Alan Garny '' Date: Mon May 19 16:49:35 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 9587e75716c90b2652ddebbc07192118562f8547 Author: Alan Garny '' Date: Mon May 19 16:46:10 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 69e50ed5947e4e7c9557282105c646412844c766 Author: Alan Garny '' Date: Mon May 19 16:04:04 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 78fbe83e046531db4012299d4a0f848bddfe4e4e Author: Alan Garny '' Date: Mon May 19 15:33:00 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 271a1592f5f795a88503573f4689b3c94bc9413e Author: Alan Garny '' Date: Mon May 19 14:56:39 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 9e4df685f28c66ba5d9529111525b860f60f3407 Author: Alan Garny '' Date: Mon May 19 14:56:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0ecfd34668b6c63c7a7f581938cccc7423fb08d4 Author: Alan Garny '' Date: Mon May 19 14:30:52 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit f1d0f77623a76e3f173653b6473f77e8b91b2d75 Author: Alan Garny '' Date: Mon May 19 13:50:34 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 174f7b65014714892185f7700018a201ccce7b90 Author: Alan Garny '' Date: Mon May 19 13:48:56 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 9d8a95514366eb7c69d60138d2a808831e4c351b Author: Alan Garny '' Date: Mon May 19 13:25:02 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 0ac8289fc584f644cea10e59ddfaf0bd96c231f2 Author: Alan Garny '' Date: Mon May 19 13:04:05 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit f309e171f9053d104100c4fe7f734d434f5d9f05 Author: Alan Garny '' Date: Mon May 19 12:26:42 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit b9d61d4ca20381aba66638d771226263235a0b8e Author: Alan Garny '' Date: Mon May 19 12:22:40 2014 +0200 Some work towards writing some sample plugins '(#337).' commit 9b840264f4240914f834fffb7a9bffdbc4caae0e Author: Alan Garny '' Date: Mon May 19 12:16:02 2014 +0200 Argh, I 'shouldn'\''t' have ''\''simplified'\''' things. There was a reason for the way things were done the way they were: we programmatically had a list, which needs to be ''\''below'\''...' commit 4c7c90fa12178442c9fae2f51386b05c618ff501 Author: Alan Garny '' Date: Mon May 19 11:57:58 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a96b0307ae2305fe915e4514a69e3883c972ba23 Author: Alan Garny '' Date: Mon May 19 11:49:53 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 72d6794313b36f9cccf97eb99ede49f7c72cec18 Author: Alan Garny '' Date: Mon May 19 11:41:26 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 67e92ebb78033f32081fa613ffb6ae7bff547f50 Author: Alan Garny '' Date: Mon May 19 11:25:20 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 4a5ebfb5d0a221eaef0ed18d9d11a88479c12204 Author: Alan Garny '' Date: Sat May 17 16:30:41 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 0da3a3d0d2fa3efba6c5a17914e0fbd1063fb55e Author: Alan Garny '' Date: Fri May 16 23:37:32 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit db8593ded7b48d9c4dd838c72de1ddd0ebac04a0 Author: Alan Garny '' Date: Thu May 15 16:51:52 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 65daf2129382939f458ac890837911b312cac124 Author: Alan Garny '' Date: Thu May 15 15:30:02 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d161b8c721764157717a5089e36ccde5b1327d2e Author: Alan Garny '' Date: Thu May 15 11:24:37 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit da0ad6dcfc9380bcd8f5c94402622bb6f7150f0b Author: Alan Garny '' Date: Thu May 15 10:31:14 2014 +0200 Minor file reorganisation '[ci' 'skip].' commit d4175201fdbb2c1c5988de6d5700e59d45309ccf Author: Alan Garny '' Date: Thu May 15 10:20:32 2014 +0200 Minor files reorganisation '[ci' 'skip].' commit 3dbdd2827194d85215a37eae013e842e421fb938 Author: Alan Garny '' Date: Wed May 14 12:00:52 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit ab58f79a0538d4cdd8b4fb26a09935c51f38fc82 Author: Alan Garny '' Date: Tue May 13 17:34:13 2014 +0200 Some work towards writing some sample plugins '(#337).' commit ec55132d03e3e74298839a7f5d3257c09bf10c03 Author: Alan Garny '' Date: Tue May 13 17:33:41 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 9064c79d47dbef289af1b0c3f7d5031ecdb9554a Author: Alan Garny '' Date: Tue May 13 17:16:45 2014 +0200 Some work towards writing some sample plugins '(#337).' commit f7989976c705657d1a5abad2a99d011da7de0700 Author: Alan Garny '' Date: Tue May 13 16:59:17 2014 +0200 Some work towards writing some sample plugins '(#337).' commit 0170e955b87a67eaab3554906e048fc59b8b708c Author: Alan Garny '' Date: Tue May 13 16:43:21 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit f16422e871d2787aaa071600fc02b1bcdad42d9e Author: Alan Garny '' Date: Tue May 13 16:34:50 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit aadbef8dc2cf1857e5b59ae9bc1e4e6decac63eb Author: Alan Garny '' Date: Tue May 13 16:01:50 2014 +0200 Fixed the issue with anchors not working with our fixed header '(closes' '#350)' '[ci' 'skip].' commit 7996c89e95edfb78927d23b271c97ce6ced9adce Author: Alan Garny '' Date: Tue May 13 15:54:14 2014 +0200 Fixed the issue with anchors not working with our fixed header '(closes' '#350)' '[ci' 'skip].' commit 38cb6c8c3167babf91883410b240e98b48a79eca Author: Alan Garny '' Date: Tue May 13 15:36:12 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit aec0c4ec8190abf0f67f6426d4012341605884fe Author: Alan Garny '' Date: Tue May 13 14:18:19 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 9bf9bad6e386ed519fe2599f3ebb0afef0e5b9ed Author: Alan Garny '' Date: Tue May 13 11:48:30 2014 +0200 Done with upgrading to LLVM 3.4.1 '(#349).' commit 7167d3752ff3b1813cf9d97815b329ef7986a1f3 Author: Alan Garny '' Date: Mon May 12 19:08:53 2014 +0200 Some work towards upgrading to LLVM 3.4.1 '(#349)' '[ci' 'skip].' commit 12c9c1d16f4779b44f9e3d4455caa150d68563a3 Author: Alan Garny '' Date: Mon May 12 15:29:28 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0f88258b83b95931432e5192a85e601e47f4d54b Author: Alan Garny '' Date: Mon May 12 15:27:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 804f0612c2ec93b502e803ba34985365516ac5e9 Author: Alan Garny '' Date: Mon May 12 14:48:01 2014 +0200 Some work towards upgrading to LLVM 3.4.1 '(#349)' '[ci' 'skip].' commit c471d8e7ec30f7703df00d8e27eca016758b29f4 Author: Alan Garny '' Date: Mon May 12 13:41:41 2014 +0200 Fixed the issue with newly built application not opening under OS X '(closes' '#347).' The previous $'\342\200\230fix\342\200\231' was always starting OpenCOR in GUI mode '(!!).' commit 256e8c46794e725ae31078a345d371bcbfd94fb3 Author: Alan Garny '' Date: Mon May 12 11:12:28 2014 +0200 Fixed the issue with newly built application not opening under OS X '(closes' '#347).' commit e83ca82c9423bdc3e35951afd00c598efee35f0a Author: Alan Garny '' Date: Mon May 12 11:11:32 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit e1cf203908fe98dba23ba7277a3810129afbdb4e Author: Alan Garny '' Date: Sat May 10 19:50:31 2014 +0200 Fixed the issue with regards to pressing Ctrl+Q during the splash screen '(closes' '#348).' commit 1620f11a4892a862fd1f32a5dc8daaa42f699341 Author: Alan Garny '' Date: Sat May 10 18:49:12 2014 +0200 Make sure that we delete our splash screen after it has been closed '(!).' commit 7720430aef31fb88c753f6731be97e1a38f53782 Author: Alan Garny '' Date: Fri May 9 17:13:26 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit b187da81930e7767d51053b63df0c67b012f491d Author: Alan Garny '' Date: Wed May 7 18:10:29 2014 +0200 Some minor updates to the developer documentation '[ci' 'skip].' commit d47f37ab0b7bc04291d5bca7b04177547fec91b8 Author: Alan Garny '' Date: Wed May 7 17:59:19 2014 +0200 Slight improvement to our plugin class. commit 5c724b48004c245f7077a9410a0164b9b6cb9b2d Author: Alan Garny '' Date: Wed May 7 17:19:51 2014 +0200 Some minor updates to the developer documentation '[ci' 'skip].' commit 6302f07928698d4fcbfc594f64ba69c881cd5ada Author: Alan Garny '' Date: Wed May 7 15:46:31 2014 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 6f850d5fb9313a87366e144b3c52ba6d68f635a6 Author: Alan Garny '' Date: Wed May 7 15:46:15 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit eb871fbf78b2cf845fe926df4545553aad772f51 Author: Alan Garny '' Date: Wed May 7 15:07:22 2014 +0200 Some work on displaying the status of all the plugins in the CLI version '(#346).' commit b8478f65a0762bc9f6a540f226547921daa51f6f Author: Alan Garny '' Date: Wed May 7 14:41:09 2014 +0200 Some work on displaying the status of all the plugins in the CLI version '(closes' '#346).' commit 6d869d89f12855610ba4330958eeff491befccad Author: Alan Garny '' Date: Wed May 7 14:31:15 2014 +0200 $'\020To' avoid a warning on Linux '(and' therefore an error since we consider warnings as 'errors)' '[ci' 'skip].' commit 7009e7f54a9b6fb615555c05b2460e9caea08f1f Author: Alan Garny '' Date: Wed May 7 14:21:27 2014 +0200 $'\020Some' minor cleaning up. commit 675e0cb6b6e5cac5be747e71de622af9e1f8c60e Author: Alan Garny '' Date: Wed May 7 11:44:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 4746840c5ed39f99bb24b861b23412f6506b8bb1 Author: Alan Garny '' Date: Wed May 7 11:30:18 2014 +0200 Some work on displaying the status of all the plugins in the CLI version '(#346)' '[ci' 'skip].' commit fc7fe7e88c4e240ae3130fa7c6c51f796428faa0 Author: Alan Garny '' Date: Wed May 7 10:48:31 2014 +0200 Some work on displaying the status of all the plugins in the CLI version '(#346)' '[ci' 'skip].' commit 16035313c5823a4ffd5a6f8dc8cc313a1c63689d Author: Alan Garny '' Date: Wed May 7 09:32:25 2014 +0200 Generated new LLVM binaries for Windows. commit 1929668d438afa0c21172c7fe4466779d95193f9 Author: Alan Garny '' Date: Tue May 6 22:17:25 2014 +0200 Slight improvement to our plugins window '[ci' 'skip].' commit a63922a4016f161c97cf6348326278293f674613 Author: Alan Garny '' Date: Tue May 6 19:54:06 2014 +0200 Generated new LLVM binaries for Linux '[ci' 'skip].' commit 8ccbc06a6de786f6e11c35e62fe2683a34910497 Author: Alan Garny '' Date: Tue May 6 19:43:36 2014 +0200 Slight update to our LLVM README.txt file '[ci' 'skip].' commit ebb0a9e44b71e3d63d5409f923e87bafd5e22258 Author: Alan Garny '' Date: Tue May 6 19:23:19 2014 +0200 Generated new LLVM binaries for OS X '[ci' 'skip].' commit 25d55cb49e05f7f96a7950de94464eefc41af412 Merge: d75d024d9 c3d5eb90b Author: Alan Garny '' Date: Tue May 6 18:57:34 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d75d024d987fb85479a96198605bb33c2f9ca181 Author: Alan Garny '' Date: Tue May 6 18:55:38 2014 +0200 Fixed a small issue with our plugins window '(it' would crash OpenCOR when opening the plugins window with only non-selectable plugins 'available).' commit c3d5eb90b2e7ff7efa67ebbbb8f0384520cfb899 Author: Alan Garny '' Date: Tue May 6 18:19:06 2014 +0200 Generated new LLVM binaries for OS X '[ci' 'skip].' The data structure for a plugin information having slightly changed '(added' the CLI support 'flag),' new LLVM binaries had to be generated. commit 2bdeed7aee931b0a156eb74431932dfa96370e9f Author: Alan Garny '' Date: Tue May 6 17:48:15 2014 +0200 Had forgotten to update the LLVM plugin information '[ci' 'skip].' commit ba628c80f3f59070f3818ee097ad6cc9c82adbfd Author: Alan Garny '' Date: Tue May 6 17:00:56 2014 +0200 Slight improvements to our plugin manager code. commit ae2848bc85daa51874e4e944011735a0d1f7c7da Author: Alan Garny '' Date: Tue May 6 16:56:19 2014 +0200 Slight improvements to our plugin manager code. commit 84323e2731348eff3dc9cb28ab1ad9c70bd1f70c Author: Alan Garny '' Date: Tue May 6 16:41:56 2014 +0200 Done with simplifying our plugin interfaces '(closes' '#341).' commit c5d20ce2b4b1989d46b84cc68baa50785b01cdb0 Author: Alan Garny '' Date: Tue May 6 16:02:34 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit b634ff90c641a906f1bdc9081d0015b6ccd9f8d0 Author: Alan Garny '' Date: Tue May 6 16:00:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2b0340be81975bba62f66042eb0dde46a3710288 Author: Alan Garny '' Date: Tue May 6 15:23:46 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit e66bc139f3e3bda3fe7a098838a5e30e5a7387ca Author: Alan Garny '' Date: Tue May 6 15:06:44 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 0abce79ac492f4d30d0ccc8457bcc70cd034d0e5 Author: Alan Garny '' Date: Tue May 6 11:39:37 2014 +0200 Some minor cleaning up '(which,' incidentally, re-allow the building of the CLI version of OpenCOR on 'Windows).' commit 103685ec523889a1204b2006a0beab1128b29841 Author: Alan Garny '' Date: Tue May 6 11:29:29 2014 +0200 Slight improvements to our Batch files '[ci' 'skip].' commit 9a1a799fbeb17bbb9cd98580f2ef186faf7c8a98 Author: Alan Garny '' Date: Tue May 6 10:26:11 2014 +0200 Some minor updates to the user documentation '[ci' 'skip].' commit a9afa3ffef37d6bed3eb3c9227dc2946ac09ab8a Author: Alan Garny '' Date: Tue May 6 10:22:05 2014 +0200 Slight improvement to our CellML Model Repository window plugin '[ci' 'skip].' commit b673cb11dab409bae748d8d31cb4b5bf4411aba8 Author: Alan Garny '' Date: Tue May 6 09:27:42 2014 +0200 Done with fixing the issue showing/hiding docked windows '(closes' '#344).' commit 06801a9df46069f2d852a64e68cbff54e795aa16 Author: Alan Garny '' Date: Tue May 6 09:25:25 2014 +0200 Reverted the work done done so far on fixing the issue showing/hiding docked windows '(#344)' '[ci' 'skip].' commit 6e8aea002cdb66dbe872b6753ef791cd0d816347 Author: Alan Garny '' Date: Mon May 5 17:50:31 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit a084b539fa6d85e4362a25ede079899070b81c70 Author: Alan Garny '' Date: Mon May 5 17:50:15 2014 +0200 Some minor improvements to our main window class '[ci' 'skip].' commit 99a00f4a77527f9af11b4e8ceb066732a1db377e Author: Alan Garny '' Date: Mon May 5 17:11:16 2014 +0200 Some minor improvements to our central widget class '[ci' 'skip].' commit c5974490ab9352a70e0a8a0997951d489662d2d4 Author: Alan Garny '' Date: Mon May 5 16:46:35 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 13db3f0943a9d84b5c9660cb2ee3d070ee0ffc24 Author: Alan Garny '' Date: Mon May 5 16:46:16 2014 +0200 Some work towards fixing the issue showing/hiding docked windows '(#344)' '[ci' 'skip].' commit 72522b6ae0055a06200e4bfd9fd1414213b93e2d Author: Alan Garny '' Date: Mon May 5 16:26:39 2014 +0200 Done with only loading CLI-capable plugins '(and' their 'dependencies)' in CLI mode '(closes' '#345).' commit 5fc8f453b53003e8bd8d921a8a13af9f7f729c9d Author: Alan Garny '' Date: Mon May 5 15:37:41 2014 +0200 Reverted some of the ''\''improvements'\''' to our plugin manager '[ci' 'skip].' commit 958da2fe86e6377f95bd9365c1342805d9d5e2d6 Author: Alan Garny '' Date: Mon May 5 15:24:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 975d351e68d24edb2daa86fe1adca7768482d673 Author: Alan Garny '' Date: Mon May 5 14:13:54 2014 +0200 Slight improvements to our plugin manager '[ci' 'skip].' commit 3b1fc64b3761428fb16403f6b3f00f072e94bfc1 Author: Alan Garny '' Date: Mon May 5 13:33:25 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 2d0b04be3ee24a1bd176d61e2f7455d7ca0a2fb1 Author: Alan Garny '' Date: Mon May 5 13:21:13 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 389e3d29828e61693ce1e180e6dbdcc30206cb64 Author: Alan Garny '' Date: Sun May 4 19:03:23 2014 +0200 Fixed a small memory leak '[ci' 'skip].' commit 071715aa166f4f01dac0a8d3f882b56fe70f0f69 Author: Alan Garny '' Date: Sun May 4 19:02:09 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1f50fc32b85f4e5e5d4bc7cec2c4df7743f8d965 Author: Alan Garny '' Date: Sun May 4 11:04:23 2014 +0200 Slight updates to the user documentation '[ci' 'skip].' commit 9881899dc4b68d80c11996c42c49eaf8d3c30c40 Author: Alan Garny '' Date: Sun May 4 10:56:44 2014 +0200 Can now build both the CLI and GUI version of OpenCOR at the same time on Windows '(closes' '#343).' commit 0464fc9edfeea1f73283c2facc9e63d04f8fd92c Author: Alan Garny '' Date: Sun May 4 08:47:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit da9522edbe0ae541e37e2a1d072cd37fcd01fec3 Author: Alan Garny '' Date: Sun May 4 00:28:04 2014 +0200 Updated jQuery from version 1.11.0 to version 1.11.1 '[ci' 'skip].' commit 67b874b422653530df1569fe5eae11802ec5f0ba Author: Alan Garny '' Date: Sat May 3 20:32:13 2014 +0200 Done fixing the Travis CI build. This was indeed related to our making the CLI version of OpenCOR a proper CLI application on Linux and OS X. In other words, to pass $'\342\200\234-platform' $'offscreen\342\200\235' is not needed anymore '(but' was for the GUI 'version).' commit 7d404a3f7acef1359d0b28d158da361e91fcd3ba Author: Alan Garny '' Date: Sat May 3 20:11:40 2014 +0200 Getting close to fixing things for Travis CI. commit 13a2968329d47a1ab93713407285cec498a98b59 Author: Alan Garny '' Date: Sat May 3 20:05:19 2014 +0200 Getting close to fixing things for Travis CI. commit 3a2210ef782244948928455bd67a315a43f12c77 Author: Alan Garny '' Date: Sat May 3 19:58:58 2014 +0200 Getting close to fixing things for Travis CI. commit df20c03b7a912221a46db550c0c447665fd90784 Author: Alan Garny '' Date: Sat May 3 19:46:52 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' This might have been because of making the CLI version of OpenCOR a true CLI application on Linux and OS X. In other words, to pass $'\342\200\234-platform' $'offscreen\342\200\235' might have only been needed for the GUI 'version?…' commit bc0dd9f6f76ac3d91ef0af7165487a23844af51f Author: Alan Garny '' Date: Sat May 3 19:37:11 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit 25225132df5432ca9ec7781b9c69aa7ed868f749 Author: Alan Garny '' Date: Sat May 3 19:28:16 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit aa9f4fca13cf21e09c08d67aa652b47179e6e30c Author: Alan Garny '' Date: Sat May 3 19:16:32 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit c29b434b804e056ef3ca049dada951ae15183bd2 Author: Alan Garny '' Date: Sat May 3 19:09:30 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit 50c21b9a9959c9909c2e6ff4e9a5856a5b4eabde Author: Alan Garny '' Date: Sat May 3 18:52:18 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit de0adba4b88c7f5507dfaa83130cde54c10b2996 Author: Alan Garny '' Date: Sat May 3 18:39:37 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit 5f5e2f01120013476d1ed739ef9572517d1d3e8f Author: Alan Garny '' Date: Sat May 3 18:27:48 2014 +0200 Not sure what is going on with Travis CI, so adding a few ''\''tests'\''.' commit 78d6c692c1bcb2dc4e471fe7760fc9579766b3c2 Author: Alan Garny '' Date: Sat May 3 16:26:22 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 6c0b975f521c2200745ea0871d2c037ece42d612 Author: Alan Garny '' Date: Sat May 3 15:14:44 2014 +0200 Ok, the last commit was a bad move '(see' '15fde25).' commit 15fde25f9a8c381b6e3f6dc0b418b063467ffaa5 Author: Alan Garny '' Date: Sat May 3 15:07:45 2014 +0200 Slight update to our Travis CI script, now that we have a ''\''proper'\''' CLI version of OpenCOR on Linux and OS X. commit e984207d361c8bd79f8f71f52ed9cf1b160bb872 Author: Alan Garny '' Date: Sat May 3 14:44:05 2014 +0200 Done with improving the command line version of OpenCOR on Linux and OS X '(closes' '#342).' commit 08b84f139d8374f2f95b4c53128a6d853008d569 Author: Alan Garny '' Date: Sat May 3 14:38:16 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 6e11490d2130b9b7c82e46878b7c9df4ca776a50 Author: Alan Garny '' Date: Sat May 3 13:31:24 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 1e38028cd059b9ce247d2df1d0d599a901d3000b Author: Alan Garny '' Date: Sat May 3 13:23:45 2014 +0200 Some minor cleaning up. commit 12418f7885742ff289605aa97ffaf112b14af969 Author: Alan Garny '' Date: Fri May 2 19:38:16 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 076db685fdf8f51f339b85eee5eec66be0fc9e74 Author: Alan Garny '' Date: Fri May 2 19:04:45 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 19edb77d145c29a67a61bd0c196ca70974acf959 Author: Alan Garny '' Date: Fri May 2 17:35:31 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 1d84515829b7545ecad1f9fda0146cd0ce9ace44 Author: Alan Garny '' Date: Fri May 2 17:25:12 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 63a65611067bdb260827c6d988d1c7d231941d6f Author: Alan Garny '' Date: Fri May 2 17:16:49 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 3b3722166d303ee4949fbf0c6836621d915579bd Author: Alan Garny '' Date: Fri May 2 15:51:39 2014 +0200 Revert '"Some' work on simplifying our plugin interfaces '(#341)."' This reverts commit a4ef1cef9933b08d5c613cf671f507a8ba929c52. commit a4ef1cef9933b08d5c613cf671f507a8ba929c52 Author: Alan Garny '' Date: Fri May 2 15:10:12 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 058f15ce10a35fafb257bdbee8a7c176342004c5 Author: Alan Garny '' Date: Thu May 1 18:17:20 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 422a62d35704bc487a6c4d75e05e1ac835552aee Author: Alan Garny '' Date: Thu May 1 18:02:12 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 28a08ab81f615a8b199111d20b65203cf3d7600e Author: Alan Garny '' Date: Thu May 1 17:35:57 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit ce9272e98ca538f3b6a6e82571fbb3f058932b39 Author: Alan Garny '' Date: Thu May 1 16:34:27 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 3e131f8dbbcc74707dd4efd1abf11099ebc627b4 Author: Alan Garny '' Date: Thu May 1 16:21:36 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 7e3efcf1b25e10d085fd29bc78b9d1b9b88478fe Author: Alan Garny '' Date: Thu May 1 15:47:11 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 5c769a69fb8a72bf2f36ba03c1ca342c3f3e7814 Author: Alan Garny '' Date: Thu May 1 15:42:24 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 3a7a0545bbc46dc3516556b04e15eebfb6e6162a Author: Alan Garny '' Date: Wed Apr 30 18:48:26 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 8f7f2633326e78f767ad8a4eb1b8d52ee6cc31ce Author: Alan Garny '' Date: Wed Apr 30 16:21:39 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 9a35790b2860f450d40ff377587a4829294a8040 Author: Alan Garny '' Date: Wed Apr 30 15:56:21 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 4d23dec405fa7a9f1d1e4af77e0c370b50c59cf0 Author: Alan Garny '' Date: Wed Apr 30 10:50:08 2014 +0200 Removed the test that exports a remote CellML 1.1 file to CellML 1.0. Indeed, to have such a test requires the CellML model repository to work flawlessly and $'well\342\200\246' sometimes it can be done or something may be wrong with it, $'so\342\200\246' commit d6a96e149bbebcbf6a2e276a1da6012386a9d40b Author: Alan Garny '' Date: Wed Apr 30 10:26:17 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 50f6f8151f37c78a12d803671c89bc4a12801479 Author: Alan Garny '' Date: Wed Apr 30 10:14:52 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 1f00109b30452fdc699e03e9c51f2b539bbde4ea Author: Alan Garny '' Date: Wed Apr 30 10:08:20 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit ea01cef02aa5aea4d1d970b6e67ef523ae582454 Author: Alan Garny '' Date: Tue Apr 29 18:45:28 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit a8ec3c3358ca1b42529a071165033aae084fc1dc Author: Alan Garny '' Date: Tue Apr 29 18:07:02 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit fb452385a20d1db82feb213773365ef7e205c28f Author: Alan Garny '' Date: Tue Apr 29 18:00:03 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 64edd69fd6fce573ed1d25649699ad3123c9b5d9 Author: Alan Garny '' Date: Tue Apr 29 15:19:48 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit e08a807699885f946b999ec8622ed28297b32ade Author: Alan Garny '' Date: Tue Apr 29 11:44:32 2014 +0200 Some work on simplifying our plugin interfaces '(#341).' commit 4c74c384975c0714e78d6c44c090fed6c5d1f7cc Author: Alan Garny '' Date: Tue Apr 29 10:19:37 2014 +0200 Some work towards writing some sample plugins '(#337).' commit 3801b0460323ec4d4a73a52c98f40f8abea56733 Author: Alan Garny '' Date: Tue Apr 29 10:16:39 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7637fb68c872b671ebc6d23afb537ffebdcc3f0c Author: Alan Garny '' Date: Mon Apr 28 18:35:24 2014 +0200 Slight update to our CellMLTools tests since we now have SampleTools '(and' therefore another CLI-capable 'plugin).' commit 095848434d6d4596d645d2ddf70fae0361775097 Author: Alan Garny '' Date: Mon Apr 28 18:28:43 2014 +0200 Some work towards writing some sample plugins '(#337).' commit d838af5e98cc1ab47bf9fc24b06829289df03e73 Author: Alan Garny '' Date: Mon Apr 28 18:28:30 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 751af46f9e66ea8c4d4acfe5188c73161ca5f38c Author: Alan Garny '' Date: Mon Apr 28 17:52:43 2014 +0200 Some work towards writing some sample plugins '(#337).' commit e3d000fae901eb4a82e5e58a7eb6a0cd005e68f1 Author: Alan Garny '' Date: Mon Apr 28 17:01:12 2014 +0200 Argh, it sometimes resized our plugins window when it 'shouldn'\''t' have '[ci' 'skip].' Say that you decide to show/hide non-selectable plugins, then the plugins window would get resized when it clearly $'shouldn\342\200\231t' be. In the end, $'it\342\200\231s' probably best to leave things as they were before. If some text $'doesn\342\200\231t' fit, then the user can always resize the plugins window him/herself. commit f41d8f53168b1d31aa320615e7e6a4e762c8016a Author: Alan Garny '' Date: Mon Apr 28 16:13:41 2014 +0200 Some minor improvements to our building scripts. commit 0ea5ce1f9eca5af51a478d4d05b004edfe05402c Author: Alan Garny '' Date: Mon Apr 28 15:52:46 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit d315a12c66b34a8ae5789fc8d462b5b4e47d4b45 Author: Alan Garny '' Date: Mon Apr 28 15:48:50 2014 +0200 Improved, whenever necessary, the resizing of our plugins window. commit 65597f27afc835708f31e434f6921d41fe3c9d0d Author: Alan Garny '' Date: Mon Apr 28 14:45:54 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 87d5ebf6a205e1b20d38b27253c9a87ec01097ab Author: Alan Garny '' Date: Mon Apr 28 12:59:49 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit d31c8a3414b710accc901063bc0fef6ca0b7f95b Author: Alan Garny '' Date: Mon Apr 28 10:37:10 2014 +0200 Slight update to our user documentation '[ci' 'skip].' commit 0ba7e2b2c41cf616075f43fe947b4fb8d54bc07f Author: Alan Garny '' Date: Sun Apr 27 15:36:52 2014 +0200 Some minor cleaning up. commit 045000adf0cfb2680e340bcafa4160da06901d9b Author: Alan Garny '' Date: Sat Apr 26 15:12:09 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 185ac33f9eae2f0ca755e70a3374fa1b1594a267 Author: Alan Garny '' Date: Sat Apr 26 14:47:13 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 345df50154a5c08b1e0ea58496ebb6f98a092750 Merge: d86f3291b e2c05fe97 Author: Alan Garny '' Date: Sat Apr 26 14:31:36 2014 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor Conflicts: doc/developer/develop/plugins/Sample.html commit d86f3291b966a9dd86defdce58b106e7ed4c1360 Author: Alan Garny '' Date: Sat Apr 26 14:14:53 2014 +0200 Some minor cleaning up. commit 9961eb37bc582129eea282d3af7680a89aac03d1 Author: Alan Garny '' Date: Fri Apr 25 17:22:55 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit e2c05fe97872828f42f715ffb8a8dcb9047b0426 Author: Alan Garny '' Date: Fri Apr 25 17:22:55 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit c57894360993aa79fb89a2b60850c128b8481c71 Author: Alan Garny '' Date: Fri Apr 25 17:04:30 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 626b2ae1302e9bf8cbb24044412470fad6318865 Author: Alan Garny '' Date: Fri Apr 25 16:07:48 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit c5c922bb9c345601f4b67b200b50dd8ed8a79287 Author: Alan Garny '' Date: Fri Apr 25 11:52:55 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit fed7342b6be874d2edb34f5a8fa995730f6c6a1f Author: Alan Garny '' Date: Thu Apr 24 19:31:31 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7d7a680c9ad5a6c0704bf0d36be402bab775909b Author: Alan Garny '' Date: Thu Apr 24 18:30:55 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 1517519c31074c5f1dd3c7874ae25aa91a634cf5 Author: Alan Garny '' Date: Thu Apr 24 18:30:19 2014 +0200 Minor update to the developer documentation '[ci' 'skip].' commit 777ef64fe54adad1e4d3590d0cc0e1cf728d45dc Author: Alan Garny '' Date: Thu Apr 24 10:24:34 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit adc5073acac80a84dd3e861799017f7c2bd15d35 Author: Alan Garny '' Date: Thu Apr 24 10:24:21 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 3c6b3d8aea10fce2c4495554151dd4eda98e5e29 Author: Alan Garny '' Date: Wed Apr 23 19:57:10 2014 +0200 Oops, not quite all done properly '(#339).' commit 80ff091f916aa7fad02aab39fd0876e808af6147 Author: Alan Garny '' Date: Wed Apr 23 17:26:48 2014 +0200 Done renaming some plugins '(closes' '#339).' commit 04bde739c0d198ebb8d03be0af5694f913298e8d Author: Alan Garny '' Date: Wed Apr 23 17:12:03 2014 +0200 Some work towards renaming some plugins '(#339).' commit cdd8f9f35a7fa05800c0550a7271f9d3b6119c91 Author: Alan Garny '' Date: Wed Apr 23 15:58:48 2014 +0200 Renamed the '[OpenCOR]/src/plugins/misc' to '[OpenCOR]/src/plugins/miscellaneous.' commit 388de4e74702f2693bfd66ad9391b79d34872572 Author: Alan Garny '' Date: Wed Apr 23 15:46:32 2014 +0200 Some work towards renaming some plugins '(#339).' commit 385b50e8bff79875bd7ad0bfe3331b868d93866d Author: Alan Garny '' Date: Wed Apr 23 15:23:11 2014 +0200 Some work towards renaming some plugins '(#339)' '[ci' 'skip].' commit ddeb39c18fda20ee9def16c812fadaaa890d499e Author: Alan Garny '' Date: Wed Apr 23 15:19:07 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 7241dfc97b421393f9226ee49c1d26db22492389 Author: Alan Garny '' Date: Wed Apr 23 15:15:12 2014 +0200 Slight improvement to our plugins window '[ci' 'skip].' commit 3f00e2f0dfdb4bc530159263f7c612c1425f2bb1 Author: Alan Garny '' Date: Wed Apr 23 15:14:38 2014 +0200 Some work towards renaming some plugins '(#339).' commit f05443152aa4e03988716f98bc197eed76c26013 Author: Alan Garny '' Date: Wed Apr 23 14:07:42 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit c3aeb1d37d1b29e33a1c12f2599b43e90518e756 Author: Alan Garny '' Date: Wed Apr 23 09:21:21 2014 +0200 Some work towards writing some sample plugins '(#337).' commit 796b046ee5229c1d989173d7704d5f9f2db73fe2 Author: Alan Garny '' Date: Tue Apr 22 17:51:05 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit bb2e0f914427f0e794167975ffbad5fb71517562 Author: Alan Garny '' Date: Tue Apr 22 17:45:04 2014 +0200 Removed the need to provide a type for a window plugin. commit 7bad0f7e8b2631fc53b8dd464528f3900bcae2f5 Author: Alan Garny '' Date: Tue Apr 22 14:37:51 2014 +0200 Some work towards writing some sample plugins '(#337)' '[ci' 'skip].' commit 90eb4caca821d841713bf5ba26b21e83848ccc19 Author: Alan Garny '' Date: Tue Apr 22 14:14:36 2014 +0200 Some minor cleaning up '[ci' 'skip].' commit 675ad6dc73c39beca9535e475710a2d9c6836eb8 Author: Alan Garny '' Date: Tue Apr 22 14:13:44 2014 +0200 Always use indirect rendering on Linux '(closes' '#338).' commit f5422fd7dfab1b643fbb51e8a900efda593f6e11 Author: Alan Garny '' Date: Tue Apr 22 13:13:49 2014 +0200 Slight improvement to our run script '[ci' 'skip].' commit 9ef71902ad9c2635de94c007fd59d364b4fafbf1 Author: Alan Garny '' Date: Mon Apr 21 11:16:25 2014 +0200 Slight updates to the developer documentation '[ci' 'skip].' commit 0616253f22f938edbc8bbdca53e062acf4636f9e Author: Alan Garny '' Date: Sat Apr 19 10:42:12 2014 +0200 Fixed a small typo on our downloads page '[ci' 'skip].' commit 8d2362b7bdd38e9a8f37ced0cb4ba70e63184cd4 Author: Alan Garny '' Date: Wed Apr 16 17:57:27 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit e1fd84fc72df0f12f2849b138cbc7a7def3687b4 Author: Alan Garny '' Date: Wed Apr 16 15:00:24 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 2a8a5422e59c66435feb8008093c4426f9c3206e Author: Alan Garny '' Date: Tue Apr 15 16:13:29 2014 +1200 Minor updates to the user documentation '[ci' 'skip].' commit 5d71937ce0042228ad1139001b9e3f4079e72e5e Author: Alan Garny '' Date: Sun Apr 13 19:06:56 2014 +1200 New snapshots. commit 10f2864cb434f6c6b4b70d24d82b555efc89cd66 Author: Alan Garny '' Date: Sun Apr 13 18:34:43 2014 +1200 Fixed a small issue with removing global instances on a vanilla Linux machine. This was working all fine on our development machine, but definitely not a vanilla one. Whatever the case, the fix simply consists of delaying the removal of global instances after we have created our application. It is actually better this 'way!' commit 8441cd420ec2214f3294122a9127ba8e7cb7e30d Author: Alan Garny '' Date: Sun Apr 13 18:03:00 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit e31e6d06ccad5a6233e84c9a96a0d6c8c1c5d612 Author: Alan Garny '' Date: Sun Apr 13 17:07:52 2014 +1200 The qjpeg plugin from Qt is necessary if we want to be able to render JPEG images '(as' is required for our Help 'plugin).' Incidentally, everything is actually OK without this plugin on Windows and Linux. $'It\342\200\231s' just on OS X that it is really needed. Still, it $'can\342\200\231t' harm having it on Windows and Linux too. commit 2d382cdfd888f096ddb684572af625dd296def23 Author: Alan Garny '' Date: Sun Apr 13 13:22:39 2014 +1200 Updated the user documentation related to the RawView plugin '(closes' '#77)' '[ci' 'skip].' commit d3f71237d5051a09d522d9448061daaf205ee2a0 Author: Alan Garny '' Date: Sun Apr 13 11:55:01 2014 +1200 Some minor cleaning up. commit 42ece6c178ceadeab2c44530fd5f4476bd5873e1 Author: Alan Garny '' Date: Sat Apr 12 21:27:44 2014 +1200 Some minor updates to our user documentation '[ci' 'skip].' commit 81dcb3e4388c47c5c0d5eacd666a6c334bce3f21 Author: Alan Garny '' Date: Sat Apr 12 21:23:39 2014 +1200 Only use Google Analytics for the website itself '(i.e.' not locally or within 'OpenCOR)' '[ci' 'skip].' commit cee23626d4990fff8ba85421f02ec184d6c45848 Author: Alan Garny '' Date: Sat Apr 12 18:59:00 2014 +1200 Updated the screenshots for our Help plugin documentation '[ci' 'skip].' commit f8734da0a3d4e98ee184cd3c1e392f0c18d5af22 Author: Alan Garny '' Date: Sat Apr 12 18:24:47 2014 +1200 Reorganised the user documentation for our plugins '[ci' 'skip].' commit f06fbfb3545f3a24ece9f452a806c8382e2c78b4 Author: Alan Garny '' Date: Sat Apr 12 16:31:03 2014 +1200 Improved our file manager by handling the case of file not being readable anymore. commit 14251e2853b5f1b44dd80a40387e2bdd3e429778 Author: Alan Garny '' Date: Sat Apr 12 16:30:40 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 39e1ff09acbb77e97981ac5d1071abe93ece19a6 Author: Alan Garny '' Date: Sat Apr 12 15:03:08 2014 +1200 Some minor improvements to the way our file manager checks files. commit fec6753c5c69ae7ab6555ae32a93eab96293fa32 Author: Alan Garny '' Date: Sat Apr 12 14:48:32 2014 +1200 Minor fix to our file manager '[ci' 'skip].' commit e77f2b3e178a84132eaaf5af2f5d60248f1dbb34 Author: Alan Garny '' Date: Sat Apr 12 14:19:09 2014 +1200 Some minor cleaning up. commit 0ae4d6e898e4d13c5667db88a158533a2098ec6d Author: Alan Garny '' Date: Sat Apr 12 13:43:56 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 1f04490325653a2b45461429bdbc1599a30c2af8 Author: Alan Garny '' Date: Sat Apr 12 03:24:18 2014 +1200 Slight update to our user documentation '(#329)' '[ci' 'skip].' commit 6f7a4bffb62a1ac227e8addf8a277a50bd3dde86 Author: Alan Garny '' Date: Sat Apr 12 03:06:12 2014 +1200 Fixed the issue with folders and files not getting remembered from one session to another anymore in our File Organiser window '(closes' '#329).' This was caused by commit f4682b158504b2c61eca1acfc68a09f2d2505465, which was the result of some Xcode analysis '(!?).' commit 3e15956a27442711224b06686da7b0414bfe4288 Author: Alan Garny '' Date: Sat Apr 12 02:37:37 2014 +1200 Fixed the issue with not being able to open a recent local file on Windows '(closes' '#331).' I had forgotten something while working on issue '#328.' commit 932b6b057c5eabae7723214f512ba00f6ad2901a Author: Alan Garny '' Date: Fri Apr 11 16:29:54 2014 +0200 Can now close a file using Ctrl+W on Windows '(as' well as with 'Ctrl+F4;' closes '#330).' commit be653418623f1042a846e3a249c51395e1d1b4d2 Author: Alan Garny '' Date: Sat Apr 12 02:08:38 2014 +1200 Fixed the issue with local and remote files not being properly distinguished on Windows '(closes' '#328).' commit 2a90acbc40ba8e3a6d786a36777f0bbb83296a37 Author: Alan Garny '' Date: Sat Apr 12 01:45:14 2014 +1200 Slight improvement to our find/replace widget in EditorWidget '(#261).' commit 2ec207b74b4158bc04221f628e399ebd62f02ddc Author: Alan Garny '' Date: Sat Apr 12 00:41:33 2014 +1200 Some minor cleaning up. commit 722dee5079a44d743ee17e0469673a929dba573e Author: Alan Garny '' Date: Fri Apr 11 19:30:24 2014 +1200 For some reasons, the export of a remote file to a user-defined format 'doesn'\''t' work as expected on my local 32-bit Ubuntu 12.04 LTS, but is fine my 64-bit Ubuntu 12.04 LTS and on Travis 'CI!?' commit 05f3b45742a74733e57b6ebeef2e679dc523e9cf Author: Alan Garny '' Date: Fri Apr 11 19:05:35 2014 +1200 Some minor cleaning up. commit dfa7e90f3bf927a6a1ae90bb78578ecdc5df4458 Author: Alan Garny '' Date: Fri Apr 11 19:03:07 2014 +1200 Slight update to our developer documentation '[ci' 'skip].' commit 00649db80f5c6e6cc011d6f3dc5ba4941e1c31eb Author: Alan Garny '' Date: Fri Apr 11 18:52:41 2014 +1200 Added some more tests to our CellMLTools plugin. commit bf0d73b2536b4c7f21bf35648764fa3238f4e9d9 Author: Alan Garny '' Date: Fri Apr 11 16:52:36 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 7988585ba7cb5c69c8e9c7a12afc09aeccd8bad9 Author: Alan Garny '' Date: Fri Apr 11 16:12:07 2014 +1200 Fixed the export to CSV issue with derived parameters '(closes' '#327).' commit af78f1873a71a03d1a5a44aa1962bf8dd91277b9 Author: Alan Garny '' Date: Fri Apr 11 13:52:17 2014 +1200 Disable the Pretty CellML view for now. commit 4dcc7682e18cedb0534d8c5e79b03b14bb57a5df Author: Alan Garny '' Date: Fri Apr 11 12:25:14 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 910c59c5f169e671f620ce975059a9598cb876b1 Author: Alan Garny '' Date: Fri Apr 11 11:28:25 2014 +1200 Some minor cleaning up. commit cbf00a7cd7e8468b9896bd74e1e3c22769917208 Author: Alan Garny '' Date: Fri Apr 11 11:21:33 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit f0b2dc9b96fd99467dc436bafa3ddfb74c8144c9 Author: Alan Garny '' Date: Fri Apr 11 10:53:16 2014 +1200 Improved the updating the viewer in the raw CellML view. commit ff7baf4fe07d0e7a60551d53f736566c16077654 Author: Alan Garny '' Date: Fri Apr 11 10:33:11 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 93e2df2a7a92599b1f28d7d4f84f355744df40d6 Author: Alan Garny '' Date: Fri Apr 11 09:48:26 2014 +1200 Some minor cleaning up. commit 0268511fa97ca3d41973f67b1795e33bd0d066d6 Author: Alan Garny '' Date: Fri Apr 11 09:20:58 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 2019d77e108954e2754aa212ec0564d6c8cfef94 Author: Alan Garny '' Date: Fri Apr 11 09:05:47 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 2becb7263b89afac606ee2ffdb78c0e3d7f9701b Author: Alan Garny '' Date: Thu Apr 10 19:01:14 2014 +1200 Got rid of our canUndo/canRedo strategy '(#261).' It was causing more problems than anything and we can, in fact, do perfectly without, $'so\342\200\246' commit 2774947c1e82c3698b47db274ca4462f0d09dfb9 Author: Alan Garny '' Date: Thu Apr 10 18:19:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 0469283683d3936921046d67a7f2121d1e994d2e Author: Alan Garny '' Date: Thu Apr 10 17:16:17 2014 +1200 Done with replacing '"^"' and '"v"' with '"and"' and '"or",' respectively '(closes' '#326)' '[ci' 'skip].' commit 667a66478ccf7ea7b63475dc92e5fc44ae73f0d1 Author: Alan Garny '' Date: Thu Apr 10 17:12:11 2014 +1200 Oops, I forgot to remove a line in my last 'commit!' commit 8a6137cd217c75550f4eddfcc2023f77bc2ee75d Author: Alan Garny '' Date: Thu Apr 10 17:06:18 2014 +1200 Reverted some recent changes '(#261).' The 'textChanged()' signal is good enough in those cases. In fact, to use the 'SCN_MODIFIED()' signal in EditorWidget was causing issues with the rendering of equations '(too' many signals were emitted in some 'cases).' commit 896ea2ea8983f50031bb69b6ee7339e58aaa39bd Author: Alan Garny '' Date: Thu Apr 10 16:36:56 2014 +1200 Some minor cleaning up. commit 1577fb8c29037171d8b1f17ee51c9f74f7563722 Author: Alan Garny '' Date: Thu Apr 10 16:34:28 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit a1cd5c40753689640e0f5cac7281cfdb88b2b486 Author: Alan Garny '' Date: Thu Apr 10 16:22:28 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 7051504816212a059e51a3cf0f2df58e0f7941c3 Author: Alan Garny '' Date: Thu Apr 10 15:47:43 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit a6e0c7c8eb41d675843c410b1741b09fc4a1426d Author: Alan Garny '' Date: Thu Apr 10 15:15:48 2014 +1200 Minor update to the developer documentation '[ci' 'skip].' commit b1dc529abc3d20cb3419e31508b463067b12bf5d Author: Alan Garny '' Date: Thu Apr 10 14:46:12 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 1c4d98282ebc7d4a94dbc017b20c578bf06c0a7a Author: Alan Garny '' Date: Thu Apr 10 14:33:03 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 0a492a373d8c345d325b44b6d21c579db4b36d49 Author: Alan Garny '' Date: Thu Apr 10 14:06:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit cafa3c073dd076e78d6a1551269d76fd66516e51 Author: Alan Garny '' Date: Thu Apr 10 11:50:45 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit c833de27ef2303ac4a4fbd5a4d5ee1a590c4fbdc Author: Alan Garny '' Date: Thu Apr 10 09:38:19 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b5845a20bb895f8d2a7e70e1bff6238b1c0bcbf5 Author: Alan Garny '' Date: Wed Apr 9 18:41:17 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 09e96a7b14bf5d472e290485c52f64108195331e Author: Alan Garny '' Date: Wed Apr 9 17:29:13 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit f15dc8556fdb062f901faf23e5c6b13f94e46672 Author: Alan Garny '' Date: Wed Apr 9 17:20:44 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 96cb31d4d22da013811cfc423ace0e034b459acb Author: Alan Garny '' Date: Wed Apr 9 17:10:58 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 999998d6d1989fa84b3055661046a8aa4c710479 Author: Alan Garny '' Date: Wed Apr 9 16:43:35 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit dc8ce2c2fb6c6d86c24df20527d93641452631ac Author: Alan Garny '' Date: Wed Apr 9 16:33:38 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b24e32f59aa64ca260ff2b365196f1b9f7379c48 Author: Alan Garny '' Date: Wed Apr 9 16:22:51 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 25934281d81cc70f0a5c0e26a857835ede72a439 Author: Alan Garny '' Date: Wed Apr 9 16:07:19 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit ae7e74d21ee8229c790d00b3841b99a50cea80c6 Author: Alan Garny '' Date: Wed Apr 9 15:06:07 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 67f3ff322d682575c706de8eef7017f4596bc6e5 Author: Alan Garny '' Date: Wed Apr 9 14:52:59 2014 +1200 Oops, actually need to enable/disable our find spacer '[ci' 'skip].' commit a090235fecad5622415ce8a19a30c7344d53c0f8 Author: Alan Garny '' Date: Wed Apr 9 13:50:15 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit d716133985b6fc366c5077aa61cbd06aaecda421 Author: Alan Garny '' Date: Wed Apr 9 13:33:03 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit facbbff04243c1e4d043510416989bd8e2bc5b67 Author: Alan Garny '' Date: Tue Apr 8 09:46:59 2014 +0200 Fixed some small build issues on Windows. commit d14db932dd80a7df45eb17a3f918d84be3242577 Author: Alan Garny '' Date: Tue Apr 8 19:19:19 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit d5dad237d201e45c5c82c1370309a904ed1f8e2c Author: Alan Garny '' Date: Tue Apr 8 18:51:52 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 872d3228ef03d0d4d3f426afea39f2d55eaa3748 Author: Alan Garny '' Date: Tue Apr 8 17:59:42 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b60d0a4a290e380ab71a6f05122ccffd1bc511ae Author: Alan Garny '' Date: Tue Apr 8 16:40:53 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit a7245389c9eaa55ab9740521f35bb93484cdf434 Author: Alan Garny '' Date: Tue Apr 8 16:21:07 2014 +1200 Some minor cleaning up '[ci' 'skip].' This now looks OK using Qt 5, $'so\342\200\246' commit 4725082d7efdaf4c99319e3a17fcf9e6e6b0832c Author: Alan Garny '' Date: Tue Apr 8 16:17:18 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 1baac84430ec67f279d9ca338abeaf7081b03b29 Author: Alan Garny '' Date: Tue Apr 8 15:11:48 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit dda3ed1364e140a8c4addf6f3512d51b8652c24d Author: Alan Garny '' Date: Tue Apr 8 14:12:22 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit b0eb4005ba2a10e1ab8b75be182544e86dd06669 Author: Alan Garny '' Date: Tue Apr 8 12:31:45 2014 +1200 Some minor cleaning up. commit 156c3f5d471ae4ed6de28b35dd4e0fc07ef9f8f0 Author: Alan Garny '' Date: Tue Apr 8 12:20:34 2014 +1200 Minor update to our user documentation '[ci' 'skip].' commit f04c187e3551b6dff2e3b813afaa64184552ec1d Author: Alan Garny '' Date: Tue Apr 8 12:15:35 2014 +1200 Done with adding support for remote files in the command line version of the CellMLTools plugin '(closes' '#325).' commit 766a7c96d5884d7edfca504619609a8cf796dbcf Author: Alan Garny '' Date: Tue Apr 8 12:04:22 2014 +1200 Added a test to our CellMLTools plugin. commit f74c23ebba73eb74fe5f17a91956dcc8443002e0 Author: Alan Garny '' Date: Tue Apr 8 11:57:18 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 46fa83ea364c71cc870c595bf38260a425163a60 Author: Alan Garny '' Date: Mon Apr 7 18:56:04 2014 +1200 Some minor cleaning up. commit 605073b4d93c9598a79295577b2271e48dfa962e Author: Alan Garny '' Date: Mon Apr 7 18:21:34 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 4b9474a1e36330e241319c674b09d35ed681d78e Author: Alan Garny '' Date: Mon Apr 7 16:00:39 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit df7a0f30e4eab5f57a8ea131272a68e9b640b704 Author: Alan Garny '' Date: Mon Apr 7 15:40:28 2014 +1200 Some minor cleaning up. commit 00abe041158e2cb33601699d565511a48d5a49f6 Author: Alan Garny '' Date: Mon Apr 7 14:32:40 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit c5fc975ba32f33f41f16a2dacdc7c6f0740a03f0 Author: Alan Garny '' Date: Mon Apr 7 14:32:01 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit ba513179e005abba0a48398ec080fa72c264fb27 Author: Alan Garny '' Date: Mon Apr 7 14:17:55 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 2a760adbf9808d0162b77baf778341d8f8192804 Author: Alan Garny '' Date: Mon Apr 7 13:48:47 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit afc43778c8c9815f5fa9508b0c44b0d9713df2a4 Author: Alan Garny '' Date: Mon Apr 7 13:36:50 2014 +1200 Some minor cleaning up '[ci' 'skip].' commit 5b084bf0e3af2f91e8e8369640a8167c36b3aa4d Author: Alan Garny '' Date: Mon Apr 7 09:37:43 2014 +1200 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 5317a9932db7f8601647e997358a25bce726baa5 Author: Alan Garny '' Date: Sun Apr 6 23:15:21 2014 +0200 Minor fix to get the console version of OpenCOR to build on Windows. commit 903f34ccff55bd5ce4aac9b39d8e56db81b9e052 Author: Alan Garny '' Date: Fri Apr 4 18:41:49 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b2a0e7b4602fc70031ca808ae555f838d116dbee Author: Alan Garny '' Date: Fri Apr 4 16:21:50 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit fed75a246c0db12ce0c188e03e2a73fcbac0ec37 Author: Alan Garny '' Date: Fri Apr 4 15:17:20 2014 +1300 Done supporting remote files in recent files '(closes' '#324).' commit 42a005d8a18a948d35255c44dda4c6b89be246dc Author: Alan Garny '' Date: Fri Apr 4 15:02:36 2014 +1300 Slight overlooks regarding issue '#313' '[ci' 'skip].' commit bbccaf617e543764c6282378c47b4a97141f9f4b Author: Alan Garny '' Date: Fri Apr 4 15:00:56 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 30b563ad3522e60249ab07d5d94c6ef20d22535f Author: Alan Garny '' Date: Fri Apr 4 14:18:09 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit a2364254a277e49cf3dcdd42353d0f4b4cc8d59f Author: Alan Garny '' Date: Fri Apr 4 12:51:57 2014 +1300 Done supporting the opening of remote imports in the CellML Annotation view '(closes' '#323).' commit 27d41efb5b173ddf4d23729c3ae66e2f425b669c Author: Alan Garny '' Date: Fri Apr 4 11:43:44 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 029cdc93c2e437d4eb607f593bc72293e060c745 Author: Alan Garny '' Date: Fri Apr 4 11:40:41 2014 +1300 Some minor cleaning up. commit df4eb8ae274a75f5195d0868136c3363e0c02411 Author: Alan Garny '' Date: Fri Apr 4 11:26:55 2014 +1300 Done with opening a remote file '(closes' '#313).' commit 2f256c9154997668f0718c1660d2dabe1b7425c5 Author: Alan Garny '' Date: Fri Apr 4 11:18:47 2014 +1300 Some minor cleaning up. commit 124f4069f47e1979b02ec9073f7e5871c8edfa88 Author: Alan Garny '' Date: Fri Apr 4 11:05:03 2014 +1300 Some work towards opening a remote file '(#313).' commit d500b418a280bfa3b808db7c4904bd46c0f2c329 Author: Alan Garny '' Date: Fri Apr 4 11:03:58 2014 +1300 Some minor cleaning up. commit bb200022a3e9d44f1ed838a158bc75ef374730db Author: Alan Garny '' Date: Fri Apr 4 10:20:25 2014 +1300 Addressed an issue with QThreadStorage due to a QNetworkAccessManager object getting deleted too late. commit fd9ba753d7f0a68aeb1efc0cf007f34fb4d151af Author: Alan Garny '' Date: Fri Apr 4 10:01:51 2014 +1300 Some work towards opening a remote file '(#313).' commit bf5c6d43bce8bface3fd8fcc0eb0221dc1f12e72 Author: Alan Garny '' Date: Fri Apr 4 09:57:43 2014 +1300 Oops, got commit ddd1f8e112a2eaf07ecc71e79571280534ff5d8a slightly wrong '[ci' 'skip].' commit 718a3706b5048e037141861460a63da966e2994d Author: Alan Garny '' Date: Thu Apr 3 19:28:32 2014 +1300 Some work towards opening a remote file '(#313).' commit a0784a7115865351036dd2b5eff23241ac9b07f9 Author: Alan Garny '' Date: Thu Apr 3 18:57:34 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 5dde045bc36c2ebcc984b845a895fd874be25dbc Author: Alan Garny '' Date: Thu Apr 3 18:05:35 2014 +1300 Some work towards opening a remote file '(#313).' commit 6c607136d229d0ae8ce565c2072589f114e8cc61 Author: Alan Garny '' Date: Thu Apr 3 17:44:58 2014 +1300 Some minor cleaning up. commit f4f940d407bb6e1dcd119cfd1f0d18fe9d44a463 Author: Alan Garny '' Date: Thu Apr 3 17:43:21 2014 +1300 Some minor cleaning up. commit dd819a3beccffff3d6f15b8e26e3b47f9256a9db Author: Alan Garny '' Date: Thu Apr 3 16:52:20 2014 +1300 Fixed the issue with the status bar not getting reset when a file in, say, Raw view gets closed '(closes' '#322).' commit 53cec64c4b5ee2b4e74c09cb660c733da5e58807 Author: Alan Garny '' Date: Thu Apr 3 16:37:54 2014 +1300 Fixed the issue with reloading a locked file while in Raw or Raw CellML view '(closes' '#321).' commit 4de37f98fbf68934819ae40aaef34d98ef248030 Author: Alan Garny '' Date: Thu Apr 3 15:41:26 2014 +1300 Fixed the issue with reloading a file and then switching to 'an(other)' editing view '(closes' '#320).' commit 9187ed591e8bed8e84bf4cc13b0e5a03770cbd96 Author: Alan Garny '' Date: Thu Apr 3 15:05:20 2014 +1300 Some work towards opening a remote file '(#313).' commit e60d3f578e75cdfcd8309019924e6b2cde1af24c Author: Alan Garny '' Date: Thu Apr 3 14:04:31 2014 +1300 Some work towards opening a remote file '(#313).' commit 7d0b9587b399e497df9ac15efe0be4562b11d5a7 Author: Alan Garny '' Date: Thu Apr 3 13:03:48 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit a94fd0f340492c3b8cb8ce0db4cbd39ea1109ecc Author: Alan Garny '' Date: Thu Apr 3 11:50:24 2014 +1300 Some work towards opening a remote file '(#313).' commit 4a8ff6636f8dc0c86d693a1c8fb09b90cb34788b Author: Alan Garny '' Date: Thu Apr 3 10:53:25 2014 +1300 Some work towards opening a remote file '(#313).' commit 1e436c32fa2bcd9d97b2696a4b850316e5e93572 Author: Alan Garny '' Date: Thu Apr 3 10:06:51 2014 +1300 Some work towards opening a remote file '(#313).' commit ae33465892158239a3231e8bcdb60dea5dcc89aa Author: Alan Garny '' Date: Thu Apr 3 09:28:40 2014 +1300 Some minor cleaning up. commit a24370ce0ee37a7db2ca7cb2065db996ad7236a9 Author: Alan Garny '' Date: Wed Apr 2 17:57:28 2014 +1300 Some minor work on OS X packaging '[ci' 'skip].' commit 83b8851266971fb4c06854db8e62f5ffe9b0cc4a Author: Alan Garny '' Date: Wed Apr 2 17:45:49 2014 +1300 Some work towards opening a remote file '(#313).' commit 1e74524dd799ff53f5493af615c7a63ad56ad81b Author: Alan Garny '' Date: Wed Apr 2 17:28:51 2014 +1300 Done removing the CentralWidget and DockWidget dependencies from the GUI interface '(closes' '#319).' commit 628e50b6a3351cfc19eedf0d8050175b49aedc15 Author: Alan Garny '' Date: Wed Apr 2 15:55:44 2014 +1300 Some work towards opening a remote file '(#313).' commit 69db3651d728c6db8156735fe3d61d7c86211cf7 Author: Alan Garny '' Date: Wed Apr 2 14:48:48 2014 +1300 Issue '#318' was more about improving than actually fixing something '[ci' 'skip].' commit 094d537ca4a76da62004390eabb533f6c123fec9 Author: Alan Garny '' Date: Wed Apr 2 14:08:28 2014 +1300 Got a bit carried away in my last commit. commit f468a3e7a1b7002c5ef2b5ce98e24713cef8ff1a Author: Alan Garny '' Date: Wed Apr 2 13:55:50 2014 +1300 Some minor cleaning up. commit 3d1b17b1114184df63b81670a4186d1166afe9ff Author: Alan Garny '' Date: Wed Apr 2 11:45:57 2014 +1300 Some work towards opening a remote file '(#313).' commit fe37c3ad8da48adb62c3ec3db033b98ed0d4cbe1 Author: Alan Garny '' Date: Tue Apr 1 19:01:20 2014 +1300 Fixed the issue with expanding/collapsing a node in a tree view '(closes' '#318).' commit e51079ecb35a959a6204ac369921e73072f36d1f Author: Alan Garny '' Date: Tue Apr 1 18:43:02 2014 +1300 Some minor cleaning up. commit a2d3baea821e4aefb1bf528478862870ef407aef Author: Alan Garny '' Date: Tue Apr 1 12:51:32 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 0be8b31710e4d9c6312549353308ace6e9d56593 Author: Alan Garny '' Date: Tue Apr 1 12:14:51 2014 +1300 Some work towards opening a remote file '(#313).' commit e0a012d92d23145473271c24112dc5a59bdb3798 Author: Alan Garny '' Date: Tue Apr 1 12:14:32 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 3f5ee69a56f62ad85648c069164ab9bfe48e3dc0 Author: Alan Garny '' Date: Tue Apr 1 11:06:09 2014 +1300 Some work towards opening a remote file '(#313).' commit ddd1f8e112a2eaf07ecc71e79571280534ff5d8a Author: Alan Garny '' Date: Tue Apr 1 11:06:01 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 5171633b524f1e66b541f11e14ed91802b1192f6 Author: Alan Garny '' Date: Mon Mar 31 18:44:33 2014 +1300 Some work towards opening a remote file '(#313).' commit af8ddc0e1ce0141d0c5c4d860b6fff774e4266e3 Author: Alan Garny '' Date: Mon Mar 31 18:30:56 2014 +1300 Some work towards opening a remote file '(#313).' commit beaada6bf382a42f1546e0bd5349fa96b7941a81 Author: Alan Garny '' Date: Mon Mar 31 18:13:18 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit f30504fa4e4e316f5f832b54a9fde853b1dd55df Author: Alan Garny '' Date: Mon Mar 31 17:02:48 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 09777a123ce8b724107fee2397c06e748e7e6af7 Author: Alan Garny '' Date: Mon Mar 31 16:41:36 2014 +1300 Some minor cleaning up. commit ca71e86b76fccb60e631326a529926cbdfed6564 Author: Alan Garny '' Date: Mon Mar 31 16:24:31 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit dd76d8cd58bad9715981e12357daaf47c90b00c3 Author: Alan Garny '' Date: Mon Mar 31 16:14:52 2014 +1300 Some work towards opening a remote file '(#313).' commit 7054f39552cccb2d6ce36021200d44a8de8e9c99 Author: Alan Garny '' Date: Mon Mar 31 15:51:51 2014 +1300 Some minor cleaning up. commit abed9df3ec0a7baf777a93c2b80088e015bba5ca Author: Alan Garny '' Date: Mon Mar 31 15:39:37 2014 +1300 Done with exporting a CellML file to some user format '(closes' '#312).' commit 01fdd784d7676518ae38489e48856a79b041a326 Author: Alan Garny '' Date: Mon Mar 31 12:45:27 2014 +1300 Fixed an issue with the removal of a graph panel that is selected for another file '(closes' '#315).' commit ef94e9ae597cfcb35fcc03bcbddf62b4f111040e Author: Alan Garny '' Date: Mon Mar 31 11:17:01 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit 2241e8f5979a5cf19e6ea60dbbf82afe96227206 Author: Alan Garny '' Date: Mon Mar 31 11:14:49 2014 +1300 Done with allowing the use of Ctrl+= to zoom in text in QScintillaWidget '(closes' '#314).' commit eed0371314f52ff3f4ca7cea3cc53a90c3b0583c Author: Alan Garny '' Date: Sat Mar 29 13:41:01 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit 6b0bc42aa8fcb3438d9d188436b50a8bd4cba98e Author: Alan Garny '' Date: Fri Mar 28 19:08:52 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit 782ca57dd7e1ba9f660afcfb5ad830edbe267b35 Author: Alan Garny '' Date: Fri Mar 28 19:02:42 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit fef3dfcb343050db3b82ce85d615ef1f7fc9c172 Author: Alan Garny '' Date: Fri Mar 28 18:38:42 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit 6f5173dd423f7a5d4ec9e8bf2a25f34417a84284 Author: Alan Garny '' Date: Fri Mar 28 06:36:08 2014 +0100 Some work towards exporting a CellML file to some user format '(#312).' commit c33ad09232a959d87ce540b88c57a3aff380b558 Author: Alan Garny '' Date: Fri Mar 28 18:13:22 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' It now works from the command line. commit 8316377bdd5d11974b11f979cefc47e6a83af4a7 Author: Alan Garny '' Date: Fri Mar 28 17:18:22 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit ad2efdfe412b67aaad19efd8c05978f48c2b655c Author: Alan Garny '' Date: Fri Mar 28 16:24:01 2014 +1300 Well, we actually need that TRAVIS_CI check... commit 5fac6be700743a2fe89f1d04dd466f57956f08ee Author: Alan Garny '' Date: Fri Mar 28 15:19:38 2014 +1300 Some work towards exporting a CellML file to some user format '(#312).' commit 12e6e9bc60ce06b2d9444a2dcbd60f3319948705 Author: Alan Garny '' Date: Fri Mar 28 15:03:12 2014 +1300 Some minor cleaning up. commit da0f0e86c5042da7e56bcac9c63c1976db63cb34 Author: Alan Garny '' Date: Fri Mar 28 14:33:15 2014 +1300 Got confirmation that the previous commit fails on Travis CI. The CellML Tools tests fail. commit 1fc1680cbd6f16a6c7cdbbb7cbb6a886525e95b2 Author: Alan Garny '' Date: Fri Mar 28 14:27:13 2014 +1300 Just for testing: this should fail on Travis CI. commit 7df648f910063640216757e402d22d6fd18bdab9 Author: Alan Garny '' Date: Fri Mar 28 14:20:35 2014 +1300 Some minor updates for our CI strategy. commit 7b8c1cbbf9779b068ea1f6e4082e2919b77640fa Author: Alan Garny '' Date: Fri Mar 28 14:18:33 2014 +1300 Minor update to our Travis CI file. commit cc1069fd9f9a13e4cf09a5f64f9bfb7e0799d12b Author: Alan Garny '' Date: Fri Mar 28 13:54:32 2014 +1300 Some minor cleaning up following our improved building of tests. commit 1a9a42b62d8f363d497869fd76e149b1811e0bdd Author: Alan Garny '' Date: Fri Mar 28 13:42:07 2014 +1300 Fixed the building of tests on Windows. The Core tests were not building properly. commit 75cb7bf4808f7e95ddc12862c4d231dcb7d7f853 Author: Alan Garny '' Date: Fri Mar 28 11:11:13 2014 +1300 Minor update to the developer documentation '[ci' 'skip].' commit 4e5d6294b3bd2ab86289e2944ca5f239b47de589 Author: Alan Garny '' Date: Thu Mar 27 07:10:17 2014 +0100 Some minor cleaning up. commit 3c5c6279f6b5529ee23817baaa82927a809d2585 Author: Alan Garny '' Date: Thu Mar 27 18:21:26 2014 +1300 Some work towards the export of a CellML file to a predefined format '(#312)' '[ci' 'skip].' commit 54d5dea15d25d035a11367c36607bb2dfdc7b52d Author: Alan Garny '' Date: Thu Mar 27 14:49:33 2014 +1300 Fixed the issue with the wrong equation being potentially rendered in the viewer of the Raw CellML view '(closes' '#311).' commit ced7bbdf926302ff1010ddad04d59308cbf64a95 Author: Alan Garny '' Date: Thu Mar 27 14:08:02 2014 +1300 Added a couple of Core CLI utilities, as well as created more Core tests. commit 626101704d8cfd911d9d9d026ff4f1fa42d9ec8c Author: Alan Garny '' Date: Thu Mar 27 11:46:27 2014 +1300 Added some tests for the Core plugin. commit f1315efa0134913c3e399dc3e7ab461ab4548367 Author: Alan Garny '' Date: Thu Mar 27 11:25:57 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 53bf8be1384de3489a0b0baac15515e6dc354762 Author: Alan Garny '' Date: Wed Mar 26 17:59:15 2014 +1300 Fixed the issue with the wrong message being displayed after adding a term directly and removing it straightaway '(closes' '#310).' commit 7e15ea39af84071e2476195ee8d4a6935435fbe5 Author: Alan Garny '' Date: Wed Mar 26 17:58:20 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 93a01e392fee2f10a3d6719d92d9df27fdee7086 Author: Alan Garny '' Date: Wed Mar 26 16:40:53 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit daec3ee8497772094a43be815f1924a7d14baff4 Author: Alan Garny '' Date: Wed Mar 26 15:22:20 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit fa668533e34f2538f4076c05c77c3fbed3737aed Author: Alan Garny '' Date: Wed Mar 26 13:37:03 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 47a0d40b1ddb37289241c22c5dd229f0de5dc1a7 Author: Alan Garny '' Date: Wed Mar 26 10:35:03 2014 +1300 Slight update to our developer documentation '[ci' 'skip].' commit f72410c6ba8a183e0175bf047056567a6a747239 Author: Alan Garny '' Date: Tue Mar 25 19:10:40 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 997dcb947893f64fbfb44c3322cd6492801cd94b Author: Alan Garny '' Date: Tue Mar 25 19:02:57 2014 +1300 Some minor cleaning up. commit 20f8230403b8d5a74ce254849a71de2550f32222 Author: Alan Garny '' Date: Tue Mar 25 18:50:31 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261)' '[ci' 'skip].' commit 6f6d28a6d04b95dd8801f6ed1a26f8d83978323c Author: Alan Garny '' Date: Tue Mar 25 18:48:47 2014 +1300 Prevent our tab bars '(in' our central 'widget)' from getting the focus. Indeed, in some cases, when pressing the Tab key a tab bar may get the focus while we really $'don\342\200\231t' want that '(it' $'doesn\342\200\231t' look $'\342\200\230neat\342\200\231,' especially on OS 'X).' commit 1c0ac45069f1bb6dbf22b029fb07f47c5f67db03 Author: Alan Garny '' Date: Tue Mar 25 18:29:47 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 91b3ff64644bb5e2d4b09aeda6d07093a163fc05 Author: Alan Garny '' Date: Tue Mar 25 18:05:59 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit dc68e096301e2f8f88289591f015e05b09b2da6c Author: Alan Garny '' Date: Tue Mar 25 17:04:34 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 5b7d07828b4fac3b0597ea8efbbb44f673c22f01 Author: Alan Garny '' Date: Tue Mar 25 16:26:59 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit c939c60a3bf63b55fff651387aa00a80a5549f37 Author: Alan Garny '' Date: Tue Mar 25 16:14:03 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b02b8aec6536757385d16cc0aa6e8121536e305d Author: Alan Garny '' Date: Tue Mar 25 15:55:25 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 964b77b5c7b02748230a85ae5de47c1d690c0e63 Author: Alan Garny '' Date: Tue Mar 25 15:17:38 2014 +1300 Some minor improvements to our GUI interface. This arose from trying to debug something by creating a test view that $'doesn\342\200\231t' inherit from CommonWidget, which someone else might very well decide to do too, $'so\342\200\246' commit 4aadeb3922c2624dd2d58b4bc4a4041b8571f34f Author: Alan Garny '' Date: Tue Mar 25 11:42:46 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 9dda03830a637d7a9a88ec9ff71aadee908dc8e5 Author: Alan Garny '' Date: Tue Mar 25 09:45:57 2014 +1300 Some minor cleaning up. commit aa650017de244e5e2d5a42579561fc819927dd73 Author: Alan Garny '' Date: Tue Mar 25 09:35:49 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit b9b449ebc33ce25293ae84afd4b2ee2a32c043e1 Author: Alan Garny '' Date: Mon Mar 24 18:55:10 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit fdd5b3662486a8b234cba1f7658bc59175255bb0 Author: Alan Garny '' Date: Mon Mar 24 17:56:08 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 6bfb1e8fafc5736a3792e8645c2842989b909947 Author: Alan Garny '' Date: Mon Mar 24 17:34:34 2014 +1300 Fixed the issue with removing some unrecognisable metadata in the CellML Annotation view '(closes' '#309).' commit f6f1f4a2a330f8528bed928ef4117de6d8304c9f Author: Alan Garny '' Date: Mon Mar 24 16:47:38 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 63605ea52381c254c27083647f63a7b9f638a612 Author: Alan Garny '' Date: Mon Mar 24 16:47:27 2014 +1300 Slight update to the user documentation '[ci' 'skip].' commit e82f960dcd275954f87b94ceee2afd2c920090ed Author: Alan Garny '' Date: Mon Mar 24 15:27:44 2014 +1300 Fixed the issue with changing qualifiers resetting the list of possible ontological terms in the CellML Annotation view '(closes' '#308).' commit 3fcff6b1dc20152396c2cdd2a893164ea14cef99 Author: Alan Garny '' Date: Mon Mar 24 11:31:42 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit ae3723570dfae8a445a312e5ae3112c2dec4dff6 Author: Alan Garny '' Date: Fri Mar 21 17:28:23 2014 +1300 Some minor cleaning up. commit d8510d954973e1a0685a74468eb168bead0beccb Author: Alan Garny '' Date: Fri Mar 21 17:18:00 2014 +1300 Some minor cleaning up. commit b1c2fe5ec6399334632a52607590b5c74f0c9ab6 Author: Alan Garny '' Date: Fri Mar 21 17:07:17 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 391b78a7c847e68a7f4733c119572875f57277dc Author: Alan Garny '' Date: Fri Mar 21 13:52:02 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 845f19ae19e1384ed5f4bf8dafe5e89dd4937524 Author: Alan Garny '' Date: Fri Mar 21 11:54:56 2014 +1300 Some work towards supporting find/replace in our QScintilla-based widget '(#261).' commit 603425e6edc7840b85a5ef6bd86f361d665d8ea3 Author: Alan Garny '' Date: Fri Mar 21 11:49:25 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 569b3d91ee89f54129108c81bcc05e03a39c50a4 Author: Alan Garny '' Date: Fri Mar 21 11:02:39 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 49f853eda867d9bb9b53f5ad256151b27cb3c632 Author: Alan Garny '' Date: Fri Mar 21 10:46:53 2014 +1300 Slight update to our developer documentation '[ci' 'skip].' commit ab5d171e0b99350e01587592448d5278e2a31974 Author: Alan Garny '' Date: Fri Mar 21 10:34:45 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 92019f7539c7c6f85bf88e1cb706f8d623450780 Author: Alan Garny '' Date: Thu Mar 20 18:42:29 2014 +1300 Some minor cleaning up. commit 575655ff3a53ed3fe9b7c568d21ad2cc70eab28f Author: Alan Garny '' Date: Thu Mar 20 18:34:18 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit db32b6adbf947fb11a9573fd418114c104cf00e3 Author: Alan Garny '' Date: Thu Mar 20 05:00:32 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 26898e2149dbeca966beb0c9c3e069cd9bd6d029 Author: Alan Garny '' Date: Thu Mar 20 16:53:23 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit a1d152c8d8559ec4d281a38e0d52e49ad0a9b3b3 Author: Alan Garny '' Date: Thu Mar 20 16:48:18 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 117aa3f4460a129b1505cb665d6f98304291931c Author: Alan Garny '' Date: Thu Mar 20 16:34:24 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit 6003fe62c5ee1d13e6c6dfb6dde078747fbf3263 Author: Alan Garny '' Date: Thu Mar 20 15:57:41 2014 +1300 Some minor cleaning up '[ci' 'skip].' commit cd30d3344cd53ea47d5c82154588f505e5bc74ca Author: Alan Garny '' Date: Sat Mar 15 16:45:30 2014 +0100 Updated QScintilla to version 2.8.1. commit 0e0b5e953e752eef5285596e3da6d9b7150025b3 Author: Alan Garny '' Date: Sat Mar 15 11:59:55 2014 +0100 Re-enabled the Pretty CellML view plugin for our development '[ci' 'skip].' commit 0dcf10fb423c89c59234db9cd39f42792101bf9a Author: Alan Garny '' Date: Sat Mar 15 11:59:00 2014 +0100 New snapshots. commit b73dc40c8039744829c764db8ed9b807fa215310 Author: Alan Garny '' Date: Sat Mar 15 11:35:58 2014 +0100 Updated various CMake files so that QtXmlPatterns gets properly referenced on OS X. commit c2388128ebe18abcb2c815b6e9412635555db383 Author: Alan Garny '' Date: Fri Mar 14 19:47:53 2014 +0100 Had forgotten to add XmlPatterns to the list of Qt modules needed for the Windows CLI version of OpenCOR '[ci' 'skip].' commit 9ab1938a4c3eb0f59b446eec367d8684ca5118dc Author: Alan Garny '' Date: Fri Mar 14 19:26:41 2014 +0100 New snapshots. commit f28fb95abf2636ae146ce79b28d8888f0c29e8bc Author: Alan Garny '' Date: Fri Mar 14 19:19:50 2014 +0100 Done with using Greek symbols in our Viewer widget '(closes' '#303).' commit 57788f9998a9bd16c83cf5827c7ed4d41d31e41d Author: Alan Garny '' Date: Fri Mar 14 18:46:33 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 9dda4895c19d95c70d43ba0bbc1807906c74b897 Author: Alan Garny '' Date: Fri Mar 14 17:51:32 2014 +0100 Improved the rendering of subscripts and superscripts in Qwt. commit bb3cbbc2dcc2ceba17d374e87e9841d03cc9cfc8 Author: Alan Garny '' Date: Fri Mar 14 17:23:12 2014 +0100 Some work towards using Greek symbols in our Viewer widget '(#303).' commit 0e78d2c97eda99c976d57b0e29c14fd91b300380 Author: Alan Garny '' Date: Fri Mar 14 16:41:43 2014 +0100 Done with using subscripts in our Viewer widget '(closes' '#302).' commit 463cba09db2ba39bb4074f7638ead7d72d826aa9 Author: Alan Garny '' Date: Fri Mar 14 15:10:33 2014 +0100 Some work towards using subscripts in our Viewer widget '(#302).' commit 993bcc754a02cdacd6f47b564966f479c980bd3a Author: Alan Garny '' Date: Fri Mar 14 14:55:13 2014 +0100 Some work towards using subscripts and Greek symbols in our Viewer widget '(#302' and '#303).' commit f7b29ff17f8ce2ddc44456adf815d7f9d4e8ea78 Author: Alan Garny '' Date: Fri Mar 14 14:04:22 2014 +0100 Improved the rendering of subscripts and superscripts in Qwt. commit c988348c7b32ffb74bc6f76619f36d0de2f0b004 Author: Alan Garny '' Date: Fri Mar 14 11:39:47 2014 +0100 Some minor cleaning up. commit 389cb2569344a1dca3d558742b05bf5ac4c49ec7 Author: Alan Garny '' Date: Fri Mar 14 11:28:00 2014 +0100 Some minor improvement to our Viewer widget '(#304).' commit 2c0945378d0bd649f7375240d955d3f7d2221f7c Author: Alan Garny '' Date: Fri Mar 14 11:08:21 2014 +0100 Some work towards using subscripts in our Viewer widget '(#302).' commit be955ac1cfd78a9c04f3409be842cec9253a9f5a Author: Alan Garny '' Date: Fri Mar 14 11:04:03 2014 +0100 Some minor cleaning up. commit 6dda63ebd7f690eea9e69ea757b2b09e78fc1c63 Author: Alan Garny '' Date: Fri Mar 14 11:01:42 2014 +0100 Some work towards using subscripts in our Viewer widget '(#302).' commit 818af62f687d2647ddaea8b5fcaea2dfbb6ba29b Author: Alan Garny '' Date: Fri Mar 14 09:33:50 2014 +0100 Some work towards using Greek symbols in our Viewer widget '(#303).' commit b0ad8c022e80e289d7666abf78028cda83aac0ed Author: Alan Garny '' Date: Fri Mar 14 09:29:12 2014 +0100 Some work towards using Greek symbols in our Viewer widget '(#303).' commit f7fae691ab5c6420f824aebb10acdd391cbd973e Author: Alan Garny '' Date: Fri Mar 14 09:16:33 2014 +0100 $'\020Slight' improvement to our Viewer widget '(#304).' commit edf77dec616e2fce093b0fef9acfa73a742d8131 Author: Alan Garny '' Date: Fri Mar 14 08:45:05 2014 +0100 Updated our copy of QScintilla to the latest snapshot available '[ci' 'skip].' commit 85cd6639f6dfee866adc8e0e933572b4e01b78b3 Author: Alan Garny '' Date: Thu Mar 13 17:58:57 2014 +0100 Some minor cleaning up. commit ae385186f99fc2c194844de91e56281be323f97f Author: Alan Garny '' Date: Thu Mar 13 17:50:29 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 891a661e1e7091bb5608833b9e59a15edb270cf2 Author: Alan Garny '' Date: Thu Mar 13 15:37:30 2014 +0100 Minor update to our copy of ctop.xsl '[ci' 'skip].' commit 5c84167e174a7316c9ac59b6479a4812f13389c3 Author: Alan Garny '' Date: Thu Mar 13 11:43:13 2014 +0100 Some minor cleaning up. commit 0a03b81f8875a6c327f64074f375338fd95746ed Author: Alan Garny '' Date: Thu Mar 13 09:09:41 2014 +0100 Some minor cleaning up. commit 4edabbf73bfb5b99c0d0af7993ec7d9a3f055a00 Author: Alan Garny '' Date: Wed Mar 12 19:41:56 2014 +0100 Done with adding support for digit grouping in our Viewer widget '(closes' '#304).' commit 7d583ff23244ca047445e6544ce9f5df622a58a8 Author: Alan Garny '' Date: Wed Mar 12 19:34:06 2014 +0100 Some minor cleaning up. commit 2aac03ed2cd8d0336ee9f058534a9787eb48a64f Author: Alan Garny '' Date: Wed Mar 12 17:10:10 2014 +0100 Some work towards adding support for digit grouping in our Viewer widget '(#304).' commit dd9fda1a4aef9be7581e7e72f02822ec579f6fa7 Author: Alan Garny '' Date: Wed Mar 12 16:48:21 2014 +0100 Some work towards adding support for digit grouping in our Viewer widget '(#304).' commit 98e8be43120d69f081051b4a4c6389152a72d3d8 Author: Alan Garny '' Date: Wed Mar 12 16:12:14 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5e54711e4c3741581d5bbe87d4644a521b700944 Author: Alan Garny '' Date: Wed Mar 12 16:06:22 2014 +0100 Some minor cleaning up. commit 54e85e3318937d39a8765fdb779fe605eacaebe6 Author: Alan Garny '' Date: Wed Mar 12 15:57:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5df328fc6e6c05e057726224ced8938c1cbc0ba2 Author: Alan Garny '' Date: Wed Mar 12 15:43:17 2014 +0100 Done with keeping track of the view used by a given file and this for all possible modes '(closes' '#306).' Also some minor cleaning up here and there, as well as various improvements to the code. Finally, also fixed an issue with changing modes not retrieving the $'\342\200\230old\342\200\231' view for the $'\342\200\230new\342\200\231' mode, this for a given file. commit 805a61ac8148430af74ba2b902925c0fed2bdb41 Author: Alan Garny '' Date: Wed Mar 12 10:45:36 2014 +0100 Only show our splash screen when in release mode '(since' it can get in the way when 'debugging)' '[ci' 'skip].' commit c92961832c23aa329fc7ad93ea09ce31c2b585bf Author: Alan Garny '' Date: Tue Mar 11 15:31:53 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c175e7d764fbaf2376b28b204c24666cf1500231 Author: Alan Garny '' Date: Tue Mar 11 14:52:12 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit feb538887579b3eccfaf41e8847829f2a39eb76c Author: Alan Garny '' Date: Tue Mar 11 14:47:26 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes '(#306).' commit ad042457ebd01cedd92cb92ee21d8dc098dbf35c Author: Alan Garny '' Date: Tue Mar 11 14:45:43 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 6f8d2d927f790ac621f78a6202e4707d046fba33 Author: Alan Garny '' Date: Tue Mar 11 11:18:14 2014 +0100 'Don'\''t' need the 'viewRawName()' interface in the end '[ci' 'skip].' commit fe2bb7f4274e8d6e9bc8fb842594107485e395fb Author: Alan Garny '' Date: Tue Mar 11 10:28:56 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 884ba3cb4d3d901020021abd4b1d1297270aa75d Author: Alan Garny '' Date: Tue Mar 11 10:20:58 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 67c4fd08b1606ce063edd326a086bae4e2011b43 Author: Alan Garny '' Date: Tue Mar 11 10:02:10 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 928a1e742a134e5c93e9eff9101dbbb7806af0fb Author: Alan Garny '' Date: Tue Mar 11 09:44:10 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c5a5959b0d7b57965430e4004a59e1b0d7418bb4 Author: Alan Garny '' Date: Tue Mar 11 08:39:12 2014 +0100 Slight update to the developer documentation '[ci' 'skip].' commit c629de4396226dbe77fa18a13eaa1470bb04d9ab Author: Alan Garny '' Date: Mon Mar 10 18:15:34 2014 +0100 Some minor cleaning up. commit e6ae7771d9d59a55719f904c0928da4099da3fda Author: Alan Garny '' Date: Mon Mar 10 18:02:36 2014 +0100 Some minor cleaning up. commit 71720c63fc8f5bb0a5a3535995f8b0e5395a0fbf Author: Alan Garny '' Date: Mon Mar 10 16:21:19 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes '(#306).' commit 0c1657771b78fa259c2729408ba90171638129e3 Author: Alan Garny '' Date: Mon Mar 10 15:52:24 2014 +0100 Some work towards keeping track of the view used by a given file and this for all possible modes '(#306).' commit 7a05de6a13bb41a64218acdf37e320c4fea1e564 Author: Alan Garny '' Date: Mon Mar 10 15:23:31 2014 +0100 Some minor cleaning up. commit b8c9b92c178304c51a75cf8dc129826d55e22022 Author: Alan Garny '' Date: Mon Mar 10 15:12:36 2014 +0100 Some minor cleaning up. commit ff47c9d71cce8a847202226e09e3c7ad86cd7113 Author: Alan Garny '' Date: Mon Mar 10 15:00:25 2014 +0100 Some minor improvement to our 'readTextFromFile()' function. commit 9fb63b5d9d9f8ed985f6858abd97366896dc034a Author: Alan Garny '' Date: Mon Mar 10 13:49:27 2014 +0100 Done with making it possible for our Viewer widget to toggle its optimise font size feature, as well as keep track of its settings from one session to another '(closes' '#305).' commit 0e94c26795854938a386f85589d3b925ea16dfd5 Author: Alan Garny '' Date: Mon Mar 10 12:54:30 2014 +0100 Fixed a small issue with building on Windows. commit f69da5cf1d1cc8ff7ab827a432607f9ae11004e8 Author: Alan Garny '' Date: Mon Mar 10 11:55:34 2014 +0100 Some work on making it possible to toggle the optimise font size feature of our Viewer widget '(#305).' commit 2cf0403b3f9131109e63922c1f4c4832ba15e15a Author: Alan Garny '' Date: Mon Mar 10 10:32:21 2014 +0100 Some minor cleaning up. commit cb3041053478734ce2c1c9d276a2f50f8456c8de Author: Alan Garny '' Date: Mon Mar 10 09:48:35 2014 +0100 Some minor cleaning up. commit 63a91cce62950f1644260c6398539e24ba12d4c3 Author: Alan Garny '' Date: Sat Mar 8 18:42:15 2014 +0100 New snapshots. commit 03251368fc7cb811525aabe10dae0b635f94f70b Author: Alan Garny '' Date: Sat Mar 8 18:39:52 2014 +0100 Now using middle dots rather than invisible multiplication signs in our Viewer widget '(closes' '#301).' commit b809a09f311acb0027f5e16ac6628ea590271178 Author: Alan Garny '' Date: Sat Mar 8 18:37:57 2014 +0100 Now using middle dots rather than invisible multiplication signs in our Viewer widget '(closes' '#301).' commit 152b1117f3832a3bb4202313ed8cdf23099661d8 Author: Alan Garny '' Date: Sat Mar 8 18:31:36 2014 +0100 Fixed the issue with the Viewer widget and some mi elements not being in italics '(closes' '#297).' commit 06707199cd4bbdbd1eb4080db45003f73fdc6ebb Author: Alan Garny '' Date: Sat Mar 8 18:08:00 2014 +0100 Updated QScintilla to the latest snapshot available. commit d075b99184d0e03c0e004ae38ae420f8324ac873 Author: Alan Garny '' Date: Sat Mar 8 17:53:56 2014 +0100 Fixed the issue with the Viewer widget showing some extra space in some equations '(closes' '#298).' commit 6d463d86ff8a82167d667360e75743f279b04875 Author: Alan Garny '' Date: Sat Mar 8 17:13:30 2014 +0100 Fixed the issue with the Raw CellML view not always having its viewer updated '(closes' '#300).' commit bc2c2aab4c5aae87ba7aacbce24bb0d2737031a5 Author: Alan Garny '' Date: Sat Mar 8 16:56:34 2014 +0100 Fixed the issue with the Raw CellML view not properly extracting some Content MathML equations '(closes' '#295).' commit 992427932d09a7e0d5af0f76ad2f3c2f29f0c65f Author: Alan Garny '' Date: Sat Mar 8 14:49:28 2014 +0100 Fixed the issue that prevented the 2014-03-07 snapshot from working on a vanilla machine '(closes' '#299).' commit d5ebd25edb945933d2f57410358e378e37592df1 Author: Alan Garny '' Date: Sat Mar 8 00:16:32 2014 +0100 Fixed the issue with some plugin selections crashing OpenCOR on restarting '(closes' '#296).' commit d480bcdf69fa8c095caa2db094aaefb3530cdd5f Author: Alan Garny '' Date: Fri Mar 7 18:17:47 2014 +0100 Re-enabled the Pretty CellML view '[ci' 'skip].' commit ec88df88d58016648ae78131827cf01096ed62f3 Author: Alan Garny '' Date: Fri Mar 7 18:02:08 2014 +0100 New snapshots. commit 2a525bd620691d049b51174b0040d68e0a3bfa63 Author: Alan Garny '' Date: Fri Mar 7 17:53:34 2014 +0100 Oops, forgot to remove a debug trace '[ci' 'skip].' commit d11ab47d6797365c09bf8baa1fd8380285c7b251 Author: Alan Garny '' Date: Fri Mar 7 17:49:31 2014 +0100 Done with showing mathematical equations in the viewer of the Raw CellML view '(closes' '#275).' Note that things could improved, but at least we now have a first full working version of it. commit 56479f4e178dfc0a63ff4c07e0cbdfee2f7c6458 Author: Alan Garny '' Date: Fri Mar 7 15:16:38 2014 +0100 Some minor improvement to our QScintilla-based widget. commit b412bfb3899aea0ac1a6f3cfa5e1acddebf85908 Author: Alan Garny '' Date: Fri Mar 7 08:39:09 2014 +0100 Minor cleaning up '[ci' 'skip].' commit c11611255a27c82f0c972d9541c22dcdfb340ed5 Author: Alan Garny '' Date: Thu Mar 6 18:50:59 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 46d79804165632ef2e0343dab42d8d709454fd12 Author: Alan Garny '' Date: Thu Mar 6 17:26:20 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 56cdc45aeb85d024cd0484ca4ef27bed65189e43 Author: Alan Garny '' Date: Thu Mar 6 17:24:10 2014 +0100 Done improving the Content MathML to Presentation MathML conversion '(closes' '#294).' commit ca6f669e6076c12662f24afd659fa2c2bf774aeb Author: Alan Garny '' Date: Thu Mar 6 16:53:51 2014 +0100 Some work on improving the Content MathML to Presentation MathML conversion '(#294).' commit 341040052b91197e751dd557b679b44aa80fb68c Author: Alan Garny '' Date: Thu Mar 6 16:34:02 2014 +0100 Some documentation regarding issue '#294' '[ci' 'skip].' commit a367c154610725988e1b0b41ccb21ff09f6cb1e7 Author: Alan Garny '' Date: Thu Mar 6 15:52:30 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 617dfb9b6eb1807ebce7d38d5ec874bc49549c57 Author: Alan Garny '' Date: Thu Mar 6 13:02:34 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit d2e178c026110b4413d809f58fa016ee03650ed8 Author: Alan Garny '' Date: Thu Mar 6 11:29:42 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 1c996e7b2f165362f411910c929009d567d029fa Author: Alan Garny '' Date: Wed Mar 5 18:19:41 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 9c1174ebd111b7b37ef2f6a4576b24e1e90a6da5 Author: Alan Garny '' Date: Wed Mar 5 18:17:06 2014 +0100 Minor update to our developer documentation '[ci' 'skip].' commit 91d01fd4ef83b8639121220b90c02a6f53b134b3 Author: Alan Garny '' Date: Wed Mar 5 18:09:18 2014 +0100 Minor update to our developer documentation '[ci' 'skip].' commit 7db251ba871cb7c9ebfd48837cf79f842035bf56 Author: Alan Garny '' Date: Wed Mar 5 17:45:48 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 4711b4ef324c9d4bf6effa560cb5538c3ce50a4f Author: Alan Garny '' Date: Wed Mar 5 16:31:15 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit e45ddabfff2cb84a98d64a33bff7dc7b1567e9c6 Author: Alan Garny '' Date: Wed Mar 5 15:48:31 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit c005649ee144fb93b1d30f6cac43589127a40a16 Author: Alan Garny '' Date: Wed Mar 5 15:36:42 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 70df222bb3a125ee3fc5d411250063b28ada5640 Author: Alan Garny '' Date: Wed Mar 5 14:34:06 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit e4eb9ecebbea97e8faa4c9ba30a0a38e2f169e2a Author: Alan Garny '' Date: Wed Mar 5 14:14:13 2014 +0100 Minor update to our developer documentation '[ci' 'skip].' commit cac44606e33960ee117061084e123d82d9a47672 Author: Alan Garny '' Date: Wed Mar 5 14:08:46 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit df2992131293dafbf2b883006e03ab3bd05f3f86 Author: Alan Garny '' Date: Wed Mar 5 13:34:02 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 4ebc26133b589a14f6ab052153f9252308e0f4d3 Author: Alan Garny '' Date: Wed Mar 5 13:33:46 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit d5edd2cd683c0b19fb879c18df6c116672489af8 Author: Alan Garny '' Date: Wed Mar 5 11:00:23 2014 +0100 Some minor cleaning up. commit 9de3646d3c4676e77be8c72aa504160035bae362 Author: Alan Garny '' Date: Wed Mar 5 10:50:26 2014 +0100 Some minor cleaning up. commit 50c5e8c58887eddf316ca49bffd1f7eb9c5b41b2 Author: Alan Garny '' Date: Wed Mar 5 10:39:06 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c836dd6a0196d24f2f155f95d95be494a5bdf154 Author: Alan Garny '' Date: Wed Mar 5 10:37:31 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 12c6cc0c4e423aacc333d9814120e12baec96e54 Author: Alan Garny '' Date: Tue Mar 4 16:56:53 2014 +0100 Some minor cleaning up. commit d95b367364df74cb206083bd6a4d5b10fd86cc36 Author: Alan Garny '' Date: Tue Mar 4 16:49:45 2014 +0100 Some minor cleaning up. commit 3e00fb07e1a19a66fce4593ef6f75c81d09e60df Author: Alan Garny '' Date: Tue Mar 4 16:26:05 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 050c61998e031db1bfa9706ea6f22dde95b55738 Author: Alan Garny '' Date: Tue Mar 4 14:29:43 2014 +0100 Fixed the problem with QScintillaWidget-based view and the undo feature not allowing the widget to be modified again '(closes' '#292).' commit 94afc10e3864126f5810da8049d7d1705991b458 Author: Alan Garny '' Date: Tue Mar 4 13:37:50 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 5249c07979704d41fdc30b572473f254333a6834 Author: Alan Garny '' Date: Tue Mar 4 13:35:43 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 52e119020442a8d8e2a9bb174b834e6e3730b8ec Author: Alan Garny '' Date: Tue Mar 4 13:31:01 2014 +0100 Some minor cleaning up. commit 8560af7328c8f3b76951b70b9577e6f43f7ffbf7 Author: Alan Garny '' Date: Tue Mar 4 13:27:18 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 70ea6e0250edf94621c9b142cec8bf6648bf6ed4 Author: Alan Garny '' Date: Tue Mar 4 13:18:35 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 894a1568fa6d93be61aa70441a36d2bf69ec4516 Author: Alan Garny '' Date: Tue Mar 4 13:13:07 2014 +0100 Some minor cleaning up. commit 2dcfc8a15b1692ffad98ca00208ec48d56d2d36e Author: Alan Garny '' Date: Tue Mar 4 11:03:13 2014 +0100 Some minor cleaning up. commit 38b084633b79e6e49a50ecbed7217de6e5ac24a9 Author: Alan Garny '' Date: Mon Mar 3 19:30:38 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 983dde39da31224c86bc2989add69fcc79074643 Author: Alan Garny '' Date: Mon Mar 3 19:07:00 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e40598c448bdf1aaf0d3ec84db57ca3c8308768d Author: Alan Garny '' Date: Mon Mar 3 18:42:37 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e79d8ef788b15109c269a731a13991f11c23979b Author: Alan Garny '' Date: Mon Mar 3 18:27:07 2014 +0100 Done with having all our widget classes require a parent '(closes' '#293).' commit a8041dc14c8bab8d117fd9f3be9c3d13f5f40111 Author: Alan Garny '' Date: Mon Mar 3 16:49:55 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit f8231125252e1264c5321df97f981931030c1890 Author: Alan Garny '' Date: Mon Mar 3 16:39:42 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit d98ac6037ee9f0f980746b018bf51d69eba12fd6 Author: Alan Garny '' Date: Mon Mar 3 14:49:44 2014 +0100 Some minor improvements to our Single Cell view simulation worker. commit b49a7f4c588f40f22190de39771d334a272941e2 Author: Alan Garny '' Date: Mon Mar 3 09:52:22 2014 +0100 Slight update to our Travis-CI script following the availability of Qt 5.2.1. commit 199193c26776cfbf26722873d2950c668372fa35 Author: Alan Garny '' Date: Mon Mar 3 09:43:25 2014 +0100 Slight update to our Travis-CI script following the availability of Qt 5.2.1. commit e20bff5fd86b3cc21cf96b622768667cdc04c00b Author: Alan Garny '' Date: Mon Mar 3 09:38:54 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit a2ddcf1768440090bc8686268e1e89506eb6e27f Author: Alan Garny '' Date: Sun Mar 2 12:07:47 2014 +0100 Fixed a small memory leak '[ci' 'skip].' commit b6c0ab9d8b266cd7ad71b959a18c1a6c9b895ee3 Author: Alan Garny '' Date: Sun Mar 2 09:50:34 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit fd4491a29a71636276416096656b93de8d203cec Author: Alan Garny '' Date: Sun Mar 2 09:10:56 2014 +0100 Some minor cleaning up. commit 2f59ce5176dc6f673e93fc1bdf818807d43109a1 Author: Alan Garny '' Date: Sun Mar 2 01:12:47 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit ef414ce10eb518e5260c08edfe6dab5561747631 Author: Alan Garny '' Date: Sun Mar 2 01:05:38 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit cfb68e66f7c79065cfa00898d69222a6c8488444 Author: Alan Garny '' Date: Sat Mar 1 21:01:33 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit d7b208c5faf5ccd81d5912f2ab2951ee2a3e576f Author: Alan Garny '' Date: Sat Mar 1 21:01:06 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit bc7e18f9967735483695c59536b96175c51622c5 Author: Alan Garny '' Date: Fri Feb 28 17:54:29 2014 +0100 Replaced some calls to 'repaint()' with ones to 'update()' since the former may result recursion in some cases '(not' that it has ever happened to us, but we never know how we might end up using some of our widgets in the 'future).' Otherwise, regarding the progress bar widget, I 'couldn'\''t' see any choppy progress on Windows. So, it might be that Qt improved things in that 'respect?' Same with the file organiser widget: we 'don'\''t' need to update the widget after trying to drop the same file again. commit c28d24326c8ce932d596e0d80d6944a3273a7257 Author: Alan Garny '' Date: Fri Feb 28 17:21:40 2014 +0100 Minor improvement to our Viewer widget. commit 0ba2d6d08be69cf7dab89c667441144cb80b3f18 Author: Alan Garny '' Date: Fri Feb 28 17:14:02 2014 +0100 Some minor cleaning up. commit f80cae0fb689176a750fe3f32a576ee322cb258f Author: Alan Garny '' Date: Fri Feb 28 16:59:28 2014 +0100 Some minor cleaning up. commit cc7e47f0dc19f9dd58b79be6cde9662e1eed2938 Author: Alan Garny '' Date: Fri Feb 28 16:39:00 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 7e3126f26a4c058bdbd52162ce828f59be4fc6f7 Author: Alan Garny '' Date: Fri Feb 28 16:38:44 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit f308aad1644e4cc4276e253b1984c6ebfa292deb Author: Alan Garny '' Date: Fri Feb 28 16:28:35 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 9c7dbc3606dc9318cebbef2945f5cae276b0867a Author: Alan Garny '' Date: Fri Feb 28 16:28:30 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit bd84c6f054e9f6fab097b239d958e1848a84d9a6 Author: Alan Garny '' Date: Fri Feb 28 16:13:58 2014 +0100 Some minor cleaning up. commit 5adddd456a7522d2a5e1d89b9e36a443287ba2c3 Author: Alan Garny '' Date: Fri Feb 28 15:44:01 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit 0390f9f3b348d28841e2cf2f33ca1d2f4766aa5d Author: Alan Garny '' Date: Fri Feb 28 12:56:59 2014 +0100 Some work towards showing mathematical equations in the viewer of the Raw CellML view '(#275).' commit bab4ad7f6a38db87cf6b63b0cec1883f13148d46 Author: Alan Garny '' Date: Fri Feb 28 10:59:20 2014 +0100 Fixed the issue with the CellML Annotation view not reloading a blank new file that has been saved after some contents has been written to it using, say, the Raw CellML view '(closes' '#291).' commit 093cc8240e62031f22cdb8d75e5f2055c4210f60 Author: Alan Garny '' Date: Thu Feb 27 18:45:50 2014 +0100 Fixed a small Windows build issue. commit a2875e5172a890490b51cdf29b85a99371b30451 Author: Alan Garny '' Date: Thu Feb 27 18:41:32 2014 +0100 Some minor cleaning up. commit 55139ee89e10502cc7187bf7ce4d493801bc6e1d Author: Alan Garny '' Date: Thu Feb 27 18:28:25 2014 +0100 Done with creating a blank new CellML 1.0/1.1 file '(closes' '#279' and '#280).' Also some minor cleaning up. commit 611b2a9360fa039e5c131d4f96f74c5c0e5c30e9 Author: Alan Garny '' Date: Thu Feb 27 18:04:37 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 79cdb940c143097b8e101c84a441372d24e93286 Author: Alan Garny '' Date: Thu Feb 27 18:01:12 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b89cb27c0292baed3f4766453c71b6ef7b09f8f5 Author: Alan Garny '' Date: Thu Feb 27 17:53:42 2014 +0100 Some work towards creating a blank new CellML 1.0/1.1 file '(#279' and '#280).' commit 1f4d1f807b03724ba75016958c07956771982f45 Author: Alan Garny '' Date: Thu Feb 27 17:45:07 2014 +0100 Fixed the issue with saving a blank new file '(closes' '#290).' commit 89866c3971ba54abeeb73f87f93ece41ef9c2737 Author: Alan Garny '' Date: Thu Feb 27 17:10:09 2014 +0100 Consider a blank new file as 'a(n' 'empty)' CellML file '(closes' '#289).' commit 0b79d2f2a7f8506e162d5666097d238808f59fdd Author: Alan Garny '' Date: Thu Feb 27 16:28:53 2014 +0100 Account for the fact that we might want to save a blank new file. commit a7862acd34da18129b41fea3384e96943bfd3774 Author: Alan Garny '' Date: Thu Feb 27 16:27:31 2014 +0100 Various minor improvements to our file manager. commit bcdd9eedb4a1e7369334382b1c77feeb6e07b389 Author: Alan Garny '' Date: Thu Feb 27 14:48:33 2014 +0100 Some work towards creating a blank new file '(#278).' commit 5f01e2fb1f35d3bde5247f95a14b18bc1027df56 Author: Alan Garny '' Date: Thu Feb 27 14:31:33 2014 +0100 Some work towards creating a blank new CellML 1.0/1.1 file '(#279' and '#280).' commit 7c08a6c09ad1ebe4660e0f5accc03b5cf2309608 Author: Alan Garny '' Date: Thu Feb 27 14:23:13 2014 +0100 Some work towards creating a blank new file '(#278).' commit c2241cb90e6f80f88f5631b0f1bfae9dea8e7a5d Author: Alan Garny '' Date: Thu Feb 27 13:57:03 2014 +0100 Some minor cleaning up. commit c13df662368b6bde978a13c896ec8f51f0caa2fe Author: Alan Garny '' Date: Thu Feb 27 13:19:25 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit eb1d7853fd48591e57b1197633b269b75770f382 Author: Alan Garny '' Date: Thu Feb 27 13:15:48 2014 +0100 Some minor cleaning up. commit caf33e41d65609c09f52763a3b77815204d9dced Author: Alan Garny '' Date: Thu Feb 27 11:14:43 2014 +0100 Done with adding support for EditingInterface and CellMLEditingInterface to the CellML Annotation view plugin '(closes' '#288).' commit 5058a61d73d910a496d8ef50b3c5fc6d4c819a8f Author: Alan Garny '' Date: Wed Feb 26 18:04:27 2014 +0100 Fixed the issue with duplicating a file while in CellML Annotation view '(closes' '#287).' commit 5a8f94cc7a59ed25d5b6e165d0537e1360d2f45a Author: Alan Garny '' Date: Wed Feb 26 17:17:40 2014 +0100 Done with ensuring that ''\''disabled'\''' actions that have shortcuts 'don'\''t' get get triggered when they 'shouldn'\''t' be '(closes' '#284).' commit a0a91d557cea7bbeb63e087c7d718cfe5712f769 Author: Alan Garny '' Date: Wed Feb 26 16:13:31 2014 +0100 Some work towards ensuring that ''\''disabled'\''' actions that have shortcuts 'don'\''t' get get triggered when they 'shouldn'\''t' be '(#284).' commit 0d0d8f09b923680b34d204c9d95d898ef78b0e20 Author: Alan Garny '' Date: Wed Feb 26 15:08:07 2014 +0100 Some minor cleaning up. commit 3ab110d1b8b9b8e30fe8df93536446db5265c2a9 Author: Alan Garny '' Date: Wed Feb 26 14:35:48 2014 +0100 Some minor cleaning up. commit e9cafc7601684ec67b8227dcaae1ee8ff00db876 Author: Alan Garny '' Date: Wed Feb 26 11:23:44 2014 +0100 Done with the loading/saving of 'QList' settings on Linux '(closes' '#286).' commit 0eecb51ea694f32ef5abe05438a76b825d92ab2a Author: Alan Garny '' Date: Wed Feb 26 11:06:52 2014 +0100 Some work towards the loading/saving of 'QList' settings on Linux '(#286).' commit c19149d868670e2c881723378e1f294e842e2ff4 Author: Alan Garny '' Date: Wed Feb 26 10:53:30 2014 +0100 Some work towards the loading/saving of 'QList' settings on Linux '(#286).' commit 653bf65ea4bbd4e9819f4d5d43cabf8867c59f42 Author: Alan Garny '' Date: Tue Feb 25 16:15:55 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 259709ead20b33768e57e0f31d5e84dc66a84b48 Author: Alan Garny '' Date: Tue Feb 25 14:26:59 2014 +0100 Some minor cleaning up. commit 831bb5b20605eea55605789cfb621b26a70b7110 Author: Alan Garny '' Date: Tue Feb 25 13:25:19 2014 +0100 Fixed the issue with the GUI not being properly updated when closing all the files '(closes' '#285).' commit e7ae1944f16a8f860243efe329b4e26f28f02431 Author: Alan Garny '' Date: Tue Feb 25 11:43:53 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 4c5652935e208cda3efe460ecfa2903c9b726fea Author: Alan Garny '' Date: Mon Feb 24 19:06:29 2014 +0100 A new/duplicated is now always unlocked '(until' it gets actually 'saved)' '(closes' '#283).' We also fixed/improved various things on the $'way\342\200\246' commit 8585712ea6ae29b1fda4ad9d7bdaf0dfb72834a0 Author: Alan Garny '' Date: Mon Feb 24 15:10:22 2014 +0100 Some slight improvements to showing some information about the editor in the status bar '(#277).' Functionally speaking, there is no difference, but in debug mode it prevents us from receiving some warnings on Windows. Indeed, it to call 'removeWidget()' obviously means that the status bar loses track of the widget, which means that when we try to remove the same widget a second time, we get a warning about the widget not being $'found\342\200\246' commit 11a5cb9062169e5dcc035c3a8b551cd9c1a895d5 Author: Alan Garny '' Date: Mon Feb 24 14:36:23 2014 +0100 Oops, had forgotten about the Raw CellML and Pretty CellML views '(#277).)' commit 51dffa4eae82d4bb95a2896c806a1e5d3f960305 Author: Alan Garny '' Date: Mon Feb 24 14:29:50 2014 +0100 Done with showing some information about the editor in the status bar '(closes' '#277).' commit e2503c914e2d3c261f136cfb75e7f5f591c0d116 Author: Alan Garny '' Date: Mon Feb 24 10:30:18 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 496712b32c5ae516db3b82bac0a149b2b3738f37 Author: Alan Garny '' Date: Mon Feb 24 10:22:20 2014 +0100 Some work towards showing some information about the editor in the status bar '(#277).' commit 52d4cb80b89d17b30ff986f9fdec72270716198c Author: Alan Garny '' Date: Mon Feb 24 10:21:21 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit afacf67f4482494a89e46170111c10df41b53015 Author: Alan Garny '' Date: Sun Feb 23 20:06:36 2014 +0100 Final work on using the ViewWidget class for all our view widgets '(closes' '#281).' This work was on the CellML Annotation view and resulted also in various improvements. commit 93354f0012d8aee667e4f83e0f7bd52df245e9b7 Author: Alan Garny '' Date: Sun Feb 23 20:03:03 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 9daffabf88813a0963111cb425d3bfeaef88de51 Author: Alan Garny '' Date: Sun Feb 23 15:00:33 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 977910a16f18a8216c9561ec7eceb2cb81741ff7 Author: Alan Garny '' Date: Sun Feb 23 14:23:51 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 3e296c3d8fb3589ba194ab4958d8abd06861fe0a Author: Alan Garny '' Date: Sun Feb 23 00:39:23 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b9902ab64d0ca17d9fb7c958b765e80c796fa289 Author: Alan Garny '' Date: Sun Feb 23 00:26:48 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 998b0da2354c48d54087b49ec840b47c2e8efad9 Author: Alan Garny '' Date: Sun Feb 23 00:03:22 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit cdb1d60d0b03428476779d2909ef16e61e94e355 Author: Alan Garny '' Date: Sat Feb 22 23:19:01 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c70768f6f853a013a235b6bbc6c7b5bf5c5cc8ef Author: Alan Garny '' Date: Sat Feb 22 18:13:37 2014 +0100 Final work towards refactoring code that loads/saves 'QList' settings '(closes' '#282).' commit cda7b387e5105b03c776c71f0791947f904baf64 Author: Alan Garny '' Date: Sat Feb 22 18:09:16 2014 +0100 Some work towards refactoring code that loads/saves 'QList' settings '(#282).' commit 863cf86ba7eaea88c7cc9e6667bccd116e170799 Author: Alan Garny '' Date: Sat Feb 22 17:10:19 2014 +0100 Fixed a small issue with f21e5d21cca64301583e5bf337a8f0c0d6f5b486. commit 0ea6a7d2bbc2adde333c5137c1c1fd15d1fe070b Author: Alan Garny '' Date: Sat Feb 22 15:23:23 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 113551850e327788c74cbc12d9703fbda93d9067 Author: Alan Garny '' Date: Sat Feb 22 15:22:57 2014 +0100 Reverted what I thought was some safe cleaning up. '(Shouldn'\''t' have read some of my old 'comments!)' commit f21e5d21cca64301583e5bf337a8f0c0d6f5b486 Author: Alan Garny '' Date: Sat Feb 22 14:46:08 2014 +0100 Some work towards refactoring code that loads/saves 'QList' settings '(#282).' Also, some minor cleaning up. commit b7b9745130c82deb006a3a06452687c4cc1b5c66 Author: Alan Garny '' Date: Sat Feb 22 14:21:51 2014 +0100 Some work towards refactoring code that loads/saves 'QList' settings '(#282).' Also, some minor cleaning up. commit 16d3a6339676e6747dca70ea10d6ce5de0bc8c6a Author: Alan Garny '' Date: Sat Feb 22 13:42:44 2014 +0100 Fixed a minor issue with resetting all the settings '[ci' 'skip].' commit c25f3008e0fd2764946bbbb2f5d202bfe83b23aa Author: Alan Garny '' Date: Sat Feb 22 13:33:53 2014 +0100 Fixed a small building issue on Linux. commit af1dfd3f17515b0677259cf340f639276beb1b43 Author: Alan Garny '' Date: Sat Feb 22 13:10:10 2014 +0100 Some work towards refactoring code that loads/saves 'QList' settings '(#282).' Also, some minor cleaning up. commit fbde72c82ee74c1ae360cf2561faa42ac52e28d3 Author: Alan Garny '' Date: Sat Feb 22 12:46:21 2014 +0100 Some work towards refactoring code that loads/saves 'QList' settings '(#282).' Also, some minor cleaning up. commit 723de88f5cb7984906717939a30e6ddc012a2686 Author: Alan Garny '' Date: Fri Feb 21 19:51:48 2014 +0100 Fixed a small building issue on Windows '[ci' 'skip].' commit 22503314903692b201dad9f0772f679700962c57 Author: Alan Garny '' Date: Fri Feb 21 18:36:06 2014 +0100 Some work towards using ViewWidget class for all our view widgets '(#281).' commit 1e82c1cb8134de08cf092b3aee47d51f7682c372 Author: Alan Garny '' Date: Fri Feb 21 18:29:17 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 2fa32a4c80b0af2d409267e4003146c3b093e073 Author: Alan Garny '' Date: Fri Feb 21 18:25:22 2014 +0100 Some work towards using ViewWidget class for all our view widgets '(#281).' commit 4154f087f99c29c38e63187f5ce0936dd108fbfb Author: Alan Garny '' Date: Fri Feb 21 18:19:45 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 8bb2eff9450ec034f28a2c02118e4c6b093750f2 Author: Alan Garny '' Date: Fri Feb 21 17:35:40 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 921287e4f417119639d6c1354813c8ce608b428e Author: Alan Garny '' Date: Fri Feb 21 17:33:41 2014 +0100 Fixed a silly issue in our central widget '(following' commit '1f3bedb29163d3fa15f15bb492732580ade444b3).' commit 23b2e78c13277a9c5cb4c11e3bdc66df256a3624 Author: Alan Garny '' Date: Fri Feb 21 15:15:46 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 38bfeeed67be6482203a0c0b8bdd6587f65f2cb4 Author: Alan Garny '' Date: Fri Feb 21 15:04:20 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 9c3113e31bc0edcd2f0c519bd44981f11f496134 Author: Alan Garny '' Date: Fri Feb 21 14:55:07 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 701bf5c2cdd55a3eda77ac9a5448e6d3d1b77665 Author: Alan Garny '' Date: Fri Feb 21 11:06:12 2014 +0100 Some work towards using ViewWidget class for all our view widgets '(#281).' commit 97cf084c55943958c75aa7d574d5c38107fb9091 Author: Alan Garny '' Date: Fri Feb 21 10:30:43 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e3fe0dd904dacd3cada6930b4f3aa912c694c5c7 Author: Alan Garny '' Date: Fri Feb 21 10:05:36 2014 +0100 Some work towards using ViewWidget class for all our view widgets '(#281).' commit a429eb24dedbd84fe0fd8c9c1c3f8abed3cf9003 Author: Alan Garny '' Date: Thu Feb 20 18:17:50 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 731d079fda212bd421bfd08d97e42c6c66bc46c7 Author: Alan Garny '' Date: Thu Feb 20 17:26:16 2014 +0100 Some minor cleaning up. commit 555e25885f4104a63339884e3a04406176d21412 Author: Alan Garny '' Date: Thu Feb 20 17:23:34 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e7f478391a7e84654e949ec08b56afbadcaae36b Author: Alan Garny '' Date: Thu Feb 20 16:05:07 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 09937423ab7b367904a76786b7ced695829a21ac Author: Alan Garny '' Date: Thu Feb 20 15:54:05 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit af5080dc9213b7c6a1e1e48a1715e7d62a332fdc Author: Alan Garny '' Date: Thu Feb 20 13:35:53 2014 +0100 Some work towards using ViewWidget class for all our view widgets '(#281).' commit 56e53abc487e09deb758bbfe86dfec63a69973be Author: Alan Garny '' Date: Wed Feb 19 16:20:49 2014 +0100 Some work towards showing an 'editor'\''s' information in the status bar '(#277).' commit d4629244dd9177ab2a18af03340a567592dd0d84 Author: Alan Garny '' Date: Wed Feb 19 13:58:35 2014 +0100 Slight improvement to showing the caret line in QScintillaWidget '(#276).' commit 6597708e6adbf65c40a5758162ef5e9fdd77b01c Author: Alan Garny '' Date: Wed Feb 19 13:04:35 2014 +0100 Show the caret line in QScintillaWidget '(closes' '#276).' commit e9e5c0743d62526d97dd4e1791039532e75d0dae Author: Alan Garny '' Date: Wed Feb 19 11:44:38 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 8a5893b9b530de3e6511e80f00916c95aa7d7077 Author: Alan Garny '' Date: Wed Feb 19 10:47:02 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 0f539c34695a5a5cf804625258c8aec30b365a5a Author: Alan Garny '' Date: Wed Feb 19 10:04:29 2014 +0100 New snapshots. commit 0c2d21fdf8001e636192cae570edfd857c701022 Author: Alan Garny '' Date: Tue Feb 18 18:43:53 2014 +0100 Minor update to the user documentation '[ci' 'skip].' commit 176542dbe11143825819c479e2d540c787706472 Author: Alan Garny '' Date: Tue Feb 18 18:34:54 2014 +0100 Fixed the issue with OpenCOR crashing as a result of switching to the Raw view from the CellML Annotation view '(closes' '#274).' Also slight improvement to our CoreEditing plugin. commit 1f3bedb29163d3fa15f15bb492732580ade444b3 Author: Alan Garny '' Date: Tue Feb 18 17:29:29 2014 +0100 Done with a modified file only preventing switching views for the current file '(closes' '#263).' commit d3adf263e9754cccfe7c06b312dcf1be4eb9532b Author: Alan Garny '' Date: Tue Feb 18 16:40:21 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit e082eab9cefbb505662de02220f463dd0c1039a2 Author: Alan Garny '' Date: Tue Feb 18 16:01:42 2014 +0100 Minor improvement to issue '#269.' commit 139e331f83d834c060eabbbf246c267e96eb42f2 Author: Alan Garny '' Date: Tue Feb 18 15:29:21 2014 +0100 Done with remembering the mode and view used of a particular file '(closes' '#269).' commit d5e5f642e6c673118e9882e078f3511214260cfb Author: Alan Garny '' Date: Tue Feb 18 11:45:30 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 50202ea38933939af94f68572fdb383be0448ee4 Author: Alan Garny '' Date: Tue Feb 18 10:02:58 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 01afb5aea42625c352504c84b913289b4e3ad913 Author: Alan Garny '' Date: Mon Feb 17 18:42:06 2014 +0100 Some work on allowing each file to have its ''\''own'\''' mode and view '(#269).' commit d4e9ec48a71ef5059106bdc430ed517d75040a5d Author: Alan Garny '' Date: Mon Feb 17 18:37:40 2014 +0100 Support file renaming in the Pretty CellML view '(closes' '#273).' commit 5d6e07bf16fc8d2f2873f640d0f372cff34d1277 Author: Alan Garny '' Date: Mon Feb 17 18:37:12 2014 +0100 Support file renaming in the Raw CellML view '(closes' '#272).' commit da3890fb09ac1d09bea75ffd09ec1f8e35ffa8ac Author: Alan Garny '' Date: Mon Feb 17 18:33:25 2014 +0100 Some minor cleaning up. commit 5918b8849941555f4f291103149bb4f160cf137c Author: Alan Garny '' Date: Mon Feb 17 18:11:32 2014 +0100 Fixed the issue with renaming a file without having used the CellML Annotation view '(closes' '#271).' commit 975d72510e0f201e896150d20d67236e23c37ad5 Author: Alan Garny '' Date: Mon Feb 17 18:01:13 2014 +0100 Fixed the issue with renaming a file without having used the Raw view '(closes' '#270).' commit abbda6a719d957fd2bc89389c09e65d7bb886753 Author: Alan Garny '' Date: Mon Feb 17 17:03:08 2014 +0100 Some work on allowing each file to have its ''\''own'\''' mode and view '(#269).' commit 1b7c8766bd8327be319bd90b04aebf2b5cb77646 Author: Alan Garny '' Date: Mon Feb 17 17:02:21 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 738172c7c7fcac3ad846bfdf904754ef64c71a48 Author: Alan Garny '' Date: Mon Feb 17 16:16:18 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 0134a1d6e7844655963f6c31540fc3abf6acc7de Author: Alan Garny '' Date: Mon Feb 17 16:06:14 2014 +0100 Some work on allowing each file to have its ''\''own'\''' mode and view '(#269).' commit f8d0a72c6ea1a9822edaf1ed235df37d69584c73 Author: Alan Garny '' Date: Mon Feb 17 15:24:33 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 737a6a08b7af8b263573f2407ece92147a5a5999 Author: Alan Garny '' Date: Mon Feb 17 13:42:33 2014 +0100 Some minor cleaning up. commit dcda7683355a0b2c82ac50875a96e09b8fb72acf Author: Alan Garny '' Date: Mon Feb 17 13:28:01 2014 +0100 Some minor cleaning up. commit 0858d000d3911fbda02ea201ddf4a674554e5a53 Author: Alan Garny '' Date: Mon Feb 17 11:56:41 2014 +0100 ''\''Fixed'\''' an issue with the last commit '[ci' 'skip].' commit b32b4f8ca8ab346224b43a354fb0677f1c23be62 Author: Alan Garny '' Date: Mon Feb 17 11:49:30 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 52fc36570949e5924a8c9dbcc0a7c0b0644da6a3 Author: Alan Garny '' Date: Mon Feb 17 10:52:34 2014 +0100 Minor update to our developer documentation '[ci' 'skip].' commit c7dce34577042fd866138983243bd465eeff350c Author: Alan Garny '' Date: Mon Feb 17 10:25:19 2014 +0100 Fixed the issue with the saving of a CellML file not resulting in its reloading in the SingleCell view '(closes' '#268).' commit f7aa43d0d0f73921a351804cc998313a060d53d5 Author: Alan Garny '' Date: Mon Feb 17 09:40:03 2014 +0100 Some minor cleaning up. commit 7d0e9294f5a13d043a764a731be292a36466b472 Author: Alan Garny '' Date: Sun Feb 16 17:00:52 2014 +0100 Fixed a problem with closing '(and' 'saving)' a duplicated file '(closes' '#267).' commit fabd82261ac20eb70597423365d1f6c86ed0aeaf Author: Alan Garny '' Date: Fri Feb 14 16:57:28 2014 +0100 Fixed the issue with the saving of a duplicated file suggesting the temporary file name '(closes' '#262).' commit 67e721e23015f5ea2aa630eecd88858aec393914 Author: Alan Garny '' Date: Fri Feb 14 16:55:53 2014 +0100 Make sure that only managed and non-new files can be added to our list of recent files '[ci' 'skip].' commit 365fa304413598ec22cb2b8c4a15ba0f6e3a999c Author: Alan Garny '' Date: Fri Feb 14 16:54:45 2014 +0100 Fixed a small issue with the tab tool tip of a new file '[ci' 'skip].' commit 14bb3e6c8162c7130afae46994f5d8391a9bec93 Author: Alan Garny '' Date: Fri Feb 14 16:47:32 2014 +0100 Oops, 'didn'\''t' commit enough last 'time!' commit 805099508c4d5200d356256ea4b893f20622ec1f Author: Alan Garny '' Date: Fri Feb 14 16:38:32 2014 +0100 Delete temporary files that get created for duplicated/new files '(closes' '#266).' commit c8d9d3d7874c8775ba553e30d7e1023af184f87f Author: Alan Garny '' Date: Fri Feb 14 16:23:44 2014 +0100 Improved the resetting of a file object in our file manager '[ci' 'skip].' commit 40940e31ec16f2a0ebeff19a8ad385260111ca1d Author: Alan Garny '' Date: Fri Feb 14 14:44:29 2014 +0100 Fixed the issue with a duplicated file being closed but not saved, and showing up next time round '(closes' '#264).' commit e4585267bfcc6735d5a470410fceb2b3c3e5d097 Author: Alan Garny '' Date: Fri Feb 14 14:29:23 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit ed6085c58860d696c6cca05ce6c5bb29cb804cb0 Author: Alan Garny '' Date: Fri Feb 14 14:16:58 2014 +0100 Fixed the issue with a duplicated file being closed but not saved, and being put in the list of recent files '(closes' '#265).' commit 6cbd7520684c135bfa5adf6c1cdeeb6cbe7635a4 Author: Alan Garny '' Date: Fri Feb 14 11:47:04 2014 +0100 Can now save a file using the Raw CellML view '(closes' '#260).' commit db253f500ad3d9a12c806d8f6b62aaa5de30f4c0 Author: Alan Garny '' Date: Fri Feb 14 11:46:23 2014 +0100 Fixed a small issue with resetting the undo history of our QScintilla widget '[ci' 'skipped].' commit 580eb9d5bda0b7f1b83260c704fba6754b87262e Author: Alan Garny '' Date: Thu Feb 13 17:57:11 2014 +0100 Improved the way we handle the saving of a file. commit 2adb5491f5de85d708293e65c5120ae9fb71ac01 Author: Alan Garny '' Date: Thu Feb 13 13:43:36 2014 +0100 Can now save a file using the Raw view '(closes' '#259).' commit c4bac10ac1b490a34c346285837c771415b90e51 Author: Alan Garny '' Date: Wed Feb 12 17:50:50 2014 +0100 Working towards being able to save a file that has been edited using one of our text-based views. commit 026636ea3978f4020de9b843e22043c7a5bbfd07 Author: Alan Garny '' Date: Wed Feb 12 17:41:44 2014 +0100 Some minor cleaning up. commit 233f50c0959d9f4cda996a33a32534e3f48151b7 Author: Alan Garny '' Date: Wed Feb 12 17:29:19 2014 +0100 Some minor cleaning up. commit 07abea80d958621106abbfed7809e8afb51f6bd6 Author: Alan Garny '' Date: Wed Feb 12 17:12:46 2014 +0100 Some minor cleaning up. commit c5dcd9ebe65cf28aafdec88e88bd98da27b45c30 Author: Alan Garny '' Date: Wed Feb 12 16:54:34 2014 +0100 Some minor cleaning up. commit 1067e691e0982c0595fc8c2409cc19df420a89de Author: Alan Garny '' Date: Wed Feb 12 16:19:41 2014 +0100 Some minor cleaning up. commit 5cb14d25bda98d48705df4a6c818ee7e8a468508 Author: Alan Garny '' Date: Wed Feb 12 16:08:06 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 4237b82a1a1fe895566ccb725316a389faf7bd49 Author: Alan Garny '' Date: Wed Feb 12 11:53:04 2014 +0100 Some minor cleaning up. commit e3bc727f1bed2ce9d7c1472c45ec478d8a2f515f Author: Alan Garny '' Date: Wed Feb 12 11:50:09 2014 +0100 Fixed our 'CentralWidget::saveFile()' method now that we can roughly duplicate files. commit 0e9d6cd123e8853fa31e91a3a7456b677474d0de Author: Alan Garny '' Date: Wed Feb 12 11:03:29 2014 +0100 Fixed our 'CentralWidget::saveFile()' method now that we can roughly duplicate files. commit 6e27feccd1bea05948644f86994d63786cd4f15b Author: Alan Garny '' Date: Tue Feb 11 17:23:25 2014 +0100 Fixed a small issue with regards to updating the modified state of a file that has been modified through our QScintillaWidget. commit 48589a99715cbdcef3d0967059398569bd3541ff Author: Alan Garny '' Date: Tue Feb 11 16:57:26 2014 +0100 Update the modified state of a file that has been modified through our QScintillaWidget. commit 1825b781642bd5ed8b033acc960e00be3a50397d Author: Alan Garny '' Date: Tue Feb 11 16:55:26 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 02cb345fa4b3c2c94cefc89ce741703129c05d13 Author: Alan Garny '' Date: Tue Feb 11 13:13:24 2014 +0100 Some work on the duplication of a file '(#255).' commit eb5ef6aa5074bac2c2e5376a6ee34265dc62e5f4 Author: Alan Garny '' Date: Tue Feb 11 13:05:45 2014 +0100 Some work on the duplication of a file '(#255).' commit a0fca5fa12f214462e14922df7a3327bce66c3e0 Author: Alan Garny '' Date: Mon Feb 10 09:29:47 2014 +0100 Updated our developer documentation, as well as our copy of QScintilla. commit fc9b2c096f08fc6dc6fa99d96274e7de90ce47c8 Author: Alan Garny '' Date: Thu Feb 6 10:49:47 2014 +0100 Slight updates to the developer documentation following the release of Qt 5.2.1 and Qt Creator 3.0.1 '[ci' 'skip].' commit db75f306c007a75d63a8e7fda5d78210d5a96fd3 Author: Alan Garny '' Date: Thu Feb 6 10:10:05 2014 +0100 Slight updates to the developer documentation following the release of Qt 5.2.1 and Qt Creator 3.0.1 '[ci' 'skip].' commit 49d3fa291eb639ff564f9fe3c1f1b5d46cfd1a4d Author: Alan Garny '' Date: Fri Jan 31 17:44:15 2014 +0100 Some work on the duplication of a file '(#255).' commit 0e453b92bb7793e48c13865478d483a1e0084bc1 Author: Alan Garny '' Date: Fri Jan 31 17:06:16 2014 +0100 Some minor cleaning up. commit 2c6d7e5226a591b01b48a477026f8f1ab1004364 Author: Alan Garny '' Date: Fri Jan 31 15:03:23 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5b772d182e3868814cd89146eefdf03c950b5733 Author: Alan Garny '' Date: Fri Jan 31 12:03:59 2014 +0100 Slight update to our user documentation '[ci' 'skip].' commit 563d34e30a57b85f4ba14e52339e01dcbbef4a16 Author: Alan Garny '' Date: Fri Jan 31 11:42:13 2014 +0100 Some work on the duplication of a file '(#255).' commit 4978249df5b35e40d28f01dd655ff07b5af125b0 Author: Alan Garny '' Date: Thu Jan 30 15:33:51 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit fc90c15d45443f3cbf5e9ef25a64a6077f951f37 Author: Alan Garny '' Date: Wed Jan 29 18:31:36 2014 +0100 Some minor cleaning up. commit b9704ed33d2e8f4a3fb4eb7773fd43150bdb0fb5 Author: Alan Garny '' Date: Wed Jan 29 14:59:58 2014 +0100 Show a lock in the file tab when a file is locked '(closes' '#258).' commit fed33708014c99a27a8e18c965a694d7779900f4 Author: Alan Garny '' Date: Tue Jan 28 19:47:33 2014 +0100 CellML Annotation view: fixed a small issue with the information message about the direct term not being properly updated when locking/unlocking a file. commit beaf7fb9dd5f87985a4dee09056efda3655d1355 Author: Alan Garny '' Date: Tue Jan 28 19:00:16 2014 +0100 A lot '(too' 'many!)' changes to improve our handling of file permissions changes '(#257).' commit c895d8d9b54d6dda1303606e8df928a1c909149c Author: Alan Garny '' Date: Tue Jan 28 13:28:15 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit b415cfee7d1dccf21762787d99f20b3a6afab75e Author: Alan Garny '' Date: Mon Jan 27 19:40:17 2014 +0100 Slight update to QtSingleApplication. commit 09e470a1fa679924a4256fc1aef7e700818b53d7 Author: Alan Garny '' Date: Mon Jan 27 19:23:19 2014 +0100 Some minor improvements to locking/unlocking a file. commit 0dbaae06c410970fea59e22b6bc15aeefd928e64 Author: Alan Garny '' Date: Mon Jan 27 19:00:28 2014 +0100 Some minor improvement to our CellML Annotation view '(#257).' commit 0af6a107b940e22f41e8184b78b79b3ea046c251 Author: Alan Garny '' Date: Mon Jan 27 18:08:01 2014 +0100 Some minor cleaning up '(#257).' commit 8f782b0eafaf0bbce8974e9cdf9c85eeab200410 Author: Alan Garny '' Date: Mon Jan 27 17:58:42 2014 +0100 Make sure that the CellML annotation view only allows editing of writable files '(closes' '#257).' commit 654a320c56a5bf7502134b6ea066290ff6324dc1 Author: Alan Garny '' Date: Mon Jan 27 16:28:32 2014 +0100 Some minor cleaning up. commit 2d1f30a66b3d48d725da93975625aa82663b8be8 Author: Alan Garny '' Date: Mon Jan 27 10:35:20 2014 +0100 Updated jQuery from version 1.10.2 to version 1.11.0 '[ci' 'skip].' commit 4d629b650ad729c0cefe4efbf0146c62bb9faca6 Author: Alan Garny '' Date: Sat Jan 25 23:49:15 2014 +0100 Upgraded QScintilla to the latest snapshot. commit ab4d9c7490b73eeefd81cc4431d26d7bfa797057 Author: Alan Garny '' Date: Wed Jan 22 15:00:10 2014 +0300 Minor update to our documentation readme file '(so' that we can trigger a 'build!).' commit 709032b7966ff392dd0241f45e7ef7bfcf91f5e3 Author: Alan Garny '' Date: Wed Jan 22 10:59:49 2014 +0300 Customised a message from the metadata editing view, based on whether a file is locked. commit 49bd8cd61db631a32afbcb6b6208cdba6d3ca1a8 Author: Alan Garny '' Date: Wed Jan 22 10:41:54 2014 +0300 Make it possible for plugins '(that' support the GUI 'interface)' to be told about a file having had its locked status changed or having been modified. commit e77ecf016603dd530b70002ed3402dabee64929c Author: Alan Garny '' Date: Mon Jan 20 16:56:37 2014 +0300 Some minor cleaning up. commit 2d46f544413df6e010f62ac65a54a0d75e6418de Author: Alan Garny '' Date: Mon Jan 20 10:37:45 2014 +0300 Updated our copy of QScintilla to its latest snapshot. commit b927e074878dcab2a160b0ad775ecf84bf6c3652 Author: Alan Garny '' Date: Sun Jan 19 11:59:17 2014 +0300 Some work on our file duplication feature '(#255).' commit 3d7226359b20c16df8e4ed23a103d839ca4b0e95 Author: Alan Garny '' Date: Sun Jan 19 11:55:15 2014 +0300 Some improvements to our File class. commit 482a6a4c9b767f4646ee208db145c8663c7e3926 Author: Alan Garny '' Date: Sun Jan 19 11:37:33 2014 +0300 Some minor cleaning up '[ci' 'skip].' commit 339ae9399e1952b8e3ffb74832d864bb4545b701 Author: Alan Garny '' Date: Sat Jan 18 20:52:12 2014 +0300 Minor update to the developer documentation '[ci' 'skip].' commit 94f72090debb6dfb5c0a2749c577ea4e2e129aba Author: Alan Garny '' Date: Tue Jan 14 20:03:22 2014 +0100 Slight improvement to our CMake code for retrieving a binary file. commit 047bca07a7eaae1715f112091048a402760e308c Author: Alan Garny '' Date: Tue Jan 14 19:59:22 2014 +0100 Slight improvement to our CMake code for retrieving a binary file. commit f7ec491142c6a04f5dfc3246c843f37b9dfa6f6c Author: Alan Garny '' Date: Tue Jan 14 19:53:28 2014 +0100 Some minor cleaning up of our common CMake file. commit 67cbceea8aa3729c95c2ee210d09ef170cfd9bed Author: Alan Garny '' Date: Tue Jan 14 19:01:17 2014 +0100 Slight update to our .gitignore file '[ci' 'skip].' commit 702a26fe2f8b5d2a5ec5bb7b57d9461e415134b1 Author: Alan Garny '' Date: Tue Jan 14 18:44:43 2014 +0100 Some more work on our CoreEditing plugin. commit 9f94ef208503149888d78a5c0cb57ccf57100cf1 Author: Alan Garny '' Date: Tue Jan 14 15:42:32 2014 +0100 Minor improvement to the un/locking of a file. commit c91dd4f6d98919b47c7001c2d824c0a6b227095b Author: Alan Garny '' Date: Tue Jan 14 15:42:00 2014 +0100 Enable/disable the Duplicate menu item depending on whether the current file is modified. commit 1c8a066dc33f19f8626985a22612174cbf3aafd3 Author: Alan Garny '' Date: Tue Jan 14 14:11:45 2014 +0100 Enable/disable the Locked menu item depending on whether the current file is modified. commit 0ce0a84c069083799d3cc7e56182a405e4fcb5d2 Author: Alan Garny '' Date: Tue Jan 14 11:07:02 2014 +0100 Fixed a couple of issues with locked files and editors. commit bee022e49003e27731b27ee6c2ceebe30b070341 Author: Alan Garny '' Date: Mon Jan 13 19:51:13 2014 +0100 Make editor-based views reddish for locked files. commit 7ca57cc1f229c3b1dcab4d1e34814ca77d1217f8 Author: Alan Garny '' Date: Mon Jan 13 19:38:05 2014 +0100 Some minor cleaning up. commit 194eac64e137231d64befdb153a72dbd1658e3c7 Author: Alan Garny '' Date: Mon Jan 13 19:19:00 2014 +0100 Some minor improvements on our file manager class. commit c7f7ae67ff718f7982e36bd1a7665b5afa0b9627 Author: Alan Garny '' Date: Mon Jan 13 18:47:21 2014 +0100 Bypass shortcuts used by QsciScintilla. commit b008bcabb8353afc83a4f99baabeb4ef5120e6d4 Author: Alan Garny '' Date: Mon Jan 13 18:22:20 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' commit c5f3a5c610a8e453208c7fe5df3a733a439e9fa1 Author: Alan Garny '' Date: Mon Jan 13 17:30:15 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' commit 3667155adaffef236699122f6e5a0c0cd43d4f83 Author: Alan Garny '' Date: Mon Jan 13 16:01:02 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' commit 59121c80e2e2044ac554498c4dcaa40a1466ae2b Author: Alan Garny '' Date: Mon Jan 13 15:18:21 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' commit 16d9708968a3695a5955d353c13ee7328368fc19 Author: Alan Garny '' Date: Mon Jan 13 15:00:28 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 0435541b095166b2e517ebdbb8d230bd00ba1f4c Author: Alan Garny '' Date: Mon Jan 13 14:57:53 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' Now works on all our supported platforms '(i.e.' Windows, Linux and OS 'X).' commit 32253ba1d3424eee8bed9d4f95cdfddf23d9df7a Author: Alan Garny '' Date: Mon Jan 13 11:38:55 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit 5d83424a36d258e8de83cbcaf417735b079e08b8 Author: Alan Garny '' Date: Mon Jan 13 11:26:03 2014 +0100 Some work on allowing a file to be locked/unlocked '(#256).' commit 2828051a35e5e6503404e794aa974f490321d60b Author: Alan Garny '' Date: Fri Jan 10 16:00:21 2014 +0100 Generated new LLVM '(3.4)' binaries. commit 4d8aee880123be8ecc2e7b0a06eec0c8988a03d4 Author: Alan Garny '' Date: Fri Jan 10 15:22:53 2014 +0100 Some minor cleaning up of our common CMake file for LLVM '[ci' 'skip].' commit 5042969294c28efa1db3433466b88ae5d7fccc97 Author: Alan Garny '' Date: Fri Jan 10 14:01:58 2014 +0100 Some minor cleaning up of our common CMake file for LLVM '[ci' 'skip].' commit 54d247dbfcf3bfe9b84581b9e1115e17dabc4878 Author: Alan Garny '' Date: Fri Jan 10 13:13:04 2014 +0100 Some minor cleaning up of our common CMake file for LLVM '[ci' 'skip].' commit f6887622ee5e1b32065772859a7dd095e5cca496 Author: Alan Garny '' Date: Fri Jan 10 11:10:21 2014 +0100 Some minor cleaning up of our common CMake file for LLVM '[ci' 'skip].' commit c75421d293bf8a1bcd219f470f6686b61f2ea08c Author: Alan Garny '' Date: Fri Jan 10 11:04:48 2014 +0100 Slight improvement for Linux with regards to our splash screen '[ci' 'skip].' commit 19d01caef3cb9c0ad790b16eb968db5f052e4a08 Author: Alan Garny '' Date: Thu Jan 9 21:31:07 2014 +0100 Some work on LLVM on Windows '(it' now works fine on 'Windows)' '[ci' 'skip].' commit 68159be958d158df506dca98dd4d8dc7de59d8d4 Author: Alan Garny '' Date: Thu Jan 9 18:57:48 2014 +0100 Some work on LLVM on Windows '[ci' 'skip].' commit a0f31c90f6647c2dd1fa0dce50610e65e1fdb148 Author: Alan Garny '' Date: Thu Jan 9 18:38:25 2014 +0100 Some work on LLVM on Windows '[ci' 'skip].' commit 9eedae481b858a9a81d8122dcfb4ce3c985b9273 Author: Alan Garny '' Date: Thu Jan 9 18:26:36 2014 +0100 Some work on LLVM on Windows '[ci' 'skip].' commit 0be104286e645f5fefb81dcf702e110218a45054 Author: Alan Garny '' Date: Thu Jan 9 18:21:57 2014 +0100 Some work on LLVM on Windows '[ci' 'skip].' commit fe3829331e08a58a1551a10752acce1cad3f7636 Author: Alan Garny '' Date: Thu Jan 9 17:38:04 2014 +0100 Some work on LLVM on Windows '[ci' 'skip].' commit 85a7fc30cf19be10ea34c7832bdfb66c0474c4f3 Author: Alan Garny '' Date: Thu Jan 9 17:14:56 2014 +0100 Had forgotten to unignore some LLVM files. Also some work on LLVM on Windows '[ci' 'skip].' commit 52e28b71ca22b20ea8f66d76110158f5c364c452 Author: Alan Garny '' Date: Thu Jan 9 16:33:04 2014 +0100 Slight update to various documentations '[ci' 'skip].' commit 2659cc6070681893c75710436286bb6d44674b22 Author: Alan Garny '' Date: Thu Jan 9 16:09:40 2014 +0100 Some minor cleaning up of the LLVM files. commit 4c0139d87f7b72f9f3b38d78308d980f0a0131e1 Author: Alan Garny '' Date: Thu Jan 9 15:55:40 2014 +0100 Fixed an issue with our Plugins window. commit 5955db401f9e6df61fd7721f888fa50122b08c1d Author: Alan Garny '' Date: Thu Jan 9 14:19:09 2014 +0100 Reimplemented the need to specify whether a plugin is selectable. Indeed, if only one plugin was to be available '(e.g.' the Core 'plugin),' then it used to be selectable no matter what while only a truly selectable plugin '(e.g.' the RawView 'plugin)' should be made selectable. $'It\342\200\231s' because we used to determine the selectable state of a plugin based on whether it was needed by another plugin. commit d35a5364143318a8e29e68493fa2d3da6b935292 Author: Alan Garny '' Date: Thu Jan 9 09:48:34 2014 +0100 Upgraded QScintilla to the latest changeset. commit 470bcb25b4f4b49695eb6bb4d9f6cc340fa822a5 Author: Alan Garny '' Date: Thu Jan 9 09:40:36 2014 +0100 Some minor cleaning up. commit d66b05c7dd8c38a06b2d19fffb31a86b40c998fe Author: Alan Garny '' Date: Wed Jan 8 19:43:39 2014 +0100 Upgraded LLVM to version 3.4 '[ci' 'skip].' It all works fine on OS X, so now we need to check things on Linux and Windows '(the' latter will require introducing the import/export 'statements).' commit acb417bc41f72fd814337ae6aee2ae9d951ebd8e Author: Alan Garny '' Date: Wed Jan 8 17:52:14 2014 +0100 Removed the EXTERNAL_LIBRARIES option when building a plugin. commit 9a27bfd3a005499cf008c44d0f28ebce69b864b2 Author: Alan Garny '' Date: Wed Jan 8 11:55:17 2014 +0100 Removed the EXTERNAL_LIBRARIES option when building a plugin. It was introduced to support the use of ZLib in LLVM on OS X, but we should never have needed this in the first place. commit ce789a3402f6beaf57cdc09d86c7f38ade5adbc1 Author: Alan Garny '' Date: Wed Jan 8 10:47:56 2014 +0100 Some minor cleaning up '(so' that we can build the OpenCOR executable without any plugin if we 'need/want).' commit 76c30ecc600a94eab1e317ff27d525d77773e2c7 Author: Alan Garny '' Date: Tue Jan 7 15:51:47 2014 +0100 Some minor cleaning up '[ci' 'skip].' commit c25775c36a41878f0d1f43dad7a54bd064bbca8e Author: Alan Garny '' Date: Tue Jan 7 13:53:01 2014 +0100 Slight update to the LLVM readme file '[ci' 'skip].' commit 8a16f075d7d6f26f18e85ea72fd245e0d9f3aad6 Author: Alan Garny '' Date: Tue Jan 7 09:58:32 2014 +0100 Upgraded QScintilla to the latest changeset. commit 9b67f225e04958e225180c8783223eacf8b1f3a0 Author: Alan Garny '' Date: Mon Jan 6 17:44:01 2014 +0100 Some minor cleaning up. commit bf69659b8d28816547ba45eef507a9aba01506f4 Author: Alan Garny '' Date: Sun Jan 5 18:21:15 2014 +0100 Some initial work on allowing to toggle the locked state of a file '(#256).' commit 968aa5e968f35de7b8887e2b6ac8c558cbf15d27 Author: Alan Garny '' Date: Sun Jan 5 18:20:23 2014 +0100 Some initial work on allowing the duplication of a file '(#255).' commit 35940a2817ee4c5a1a3e37aab63e26899080a98a Author: Alan Garny '' Date: Sun Jan 5 16:20:54 2014 +0100 Added support for some more editing features '(select' 'all)' in our different text-based editing views. commit 34eb3399e7e96703b237116e726752a14b90c4dc Author: Alan Garny '' Date: Sun Jan 5 16:09:28 2014 +0100 Temporarily disable the find/replace features in our core editing plugin. commit fdb5a623d01d5a38cd8142acbf1d8419ac6bbcb8 Author: Alan Garny '' Date: Sun Jan 5 11:34:25 2014 +0100 Upgraded QScintilla to the latest changeset. commit e06cff53e833a5125e97a0f820a26325a53e003f Author: Alan Garny '' Date: Sat Jan 4 11:26:22 2014 +0100 Slight update to our developer documentation '[ci' 'skip].' commit 82249ec0acde5a0028ec766947f02504cfd8aedb Author: Alan Garny '' Date: Sat Jan 4 11:26:02 2014 +0100 Upgraded QScintilla to the latest change set. commit 3f1dc09f80aa57315d5da575984ecca360a7070f Author: Alan Garny '' Date: Fri Jan 3 11:44:36 2014 +0100 Upgraded QScintilla to the latest snapshot, which ''\''properly'\''' fixes the issue with Retina displays '(#248).' commit 70fd54095e77ea70a4eea8f8d41932f27caa43e2 Author: Alan Garny '' Date: Thu Jan 2 11:45:03 2014 +0100 Minor update to QScintilla. commit 46e09bf2a2265f11fcf843f3259a8e016ef92f13 Author: Alan Garny '' Date: Sun Dec 29 13:51:41 2013 +0100 Added support for some more editing features '(undo' and 'redo)' in our different text-based editing views. commit 7bdde0752f6083fea5d3a05f157f0b46a2298e7d Author: Alan Garny '' Date: Sat Dec 28 20:00:28 2013 +0100 Improved the way we set our 'editors'\''' context menu. commit 0542ab0aa0fa2519c98d1d3ece2ad1680f62f8bf Author: Alan Garny '' Date: Sat Dec 28 17:41:04 2013 +0100 Have our editors show a more accurate context menu. commit 3e6ed5d4a76bf195b0ccad99c9dad463c7aba244 Author: Alan Garny '' Date: Fri Dec 27 17:31:52 2013 +0100 Disable the edit menu items if no file is opened. commit b44b14670ca4db71a45fab803839e357d2bc2b38 Author: Alan Garny '' Date: Thu Dec 26 20:47:56 2013 +0100 Added support for some editing features '(cut,' copy, paste and 'delete)' in our different text-based editing views. commit de332f7af35f2c4c3300921b9c596aed577d9454 Author: Alan Garny '' Date: Mon Dec 23 09:50:53 2013 +0100 Added a '"New' 'file"' action to our CoreEditing plugin. commit 1219d7d5bf70339f3494cc32d17bcbb72a92febe Author: Alan Garny '' Date: Mon Dec 23 09:35:19 2013 +0100 Updated QScintilla to the snapshot version of 21 December 2013. commit 7f03269e0c585dc29b6eb6226599d220aed4d27e Author: Alan Garny '' Date: Sun Dec 22 17:45:17 2013 +0100 Fixed a small issue with separators being counted in when they 'shouldn'\''t' have been. commit 91f6a41eb57b2d429c4230d4fdcf671d14d8509c Author: Alan Garny '' Date: Sun Dec 22 17:25:49 2013 +0100 Fixed an issue with building on Windows. commit 90df29439535c61e6bc94929587ba1048f4aa25a Author: Alan Garny '' Date: Sun Dec 22 16:46:16 2013 +0100 Show/enable or hide/disable actions within plugins themselves rather than within our main window code. commit 3a2ac2121183b7988cc7479eee059317144af17d Author: Alan Garny '' Date: Sun Dec 22 11:50:40 2013 +0100 Added a new '(CellML' 'editing)' interface. commit f9ebb6f8958a80dae8299306f7f96c2e021e45f8 Author: Alan Garny '' Date: Sat Dec 21 23:31:35 2013 +0100 Some minor cleaning up. commit e79f97aae61c6c16dc0508e4cf782e1a6737b9d4 Author: Alan Garny '' Date: Sat Dec 21 23:07:50 2013 +0100 Some minor cleaning up. commit d9249445e3770e77dca42513d7c3c85beba344b9 Author: Alan Garny '' Date: Sat Dec 21 22:07:06 2013 +0100 Created a new '(editing)' interface. Also, some minor cleaning up of our main CMake file. commit c66f1b5c8a281f9f25e80d2a683fa2c59fc437b1 Author: Alan Garny '' Date: Sat Dec 21 20:58:20 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 4d984fefe176a445a8936f196bee9e21d40f24aa Author: Alan Garny '' Date: Sat Dec 21 18:48:44 2013 +0100 Some minor cleaning up of our CellML Annotation view. commit bbb6ed7250fd93b1c4a26731f6b2209ab655b438 Author: Alan Garny '' Date: Sat Dec 21 18:26:22 2013 +0100 Minor update to our developer documentation '[ci' 'skip].' commit 88e68fab56f066d849b8fce1ef7f5e5c08a54c4a Author: Alan Garny '' Date: Wed Dec 18 14:13:45 2013 +0100 Slight improvements to our splash screen. commit 5790fd4199dd440d300122673e12771db35c27e9 Author: Alan Garny '' Date: Wed Dec 18 11:01:36 2013 +0100 Slight improvements to our splash screen. commit b392464c32089fe920e8863cd3363a944d029a90 Author: Alan Garny '' Date: Wed Dec 18 10:22:16 2013 +0100 Some minor cleaning up. commit 88c367343d08d2675de56d724759c9d5a5897616 Author: Alan Garny '' Date: Tue Dec 17 20:46:26 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit aead7eca6fc21c8922a9cff6bbacde8d2d781c11 Author: Alan Garny '' Date: Tue Dec 17 20:37:12 2013 +0100 Some minor cleaning up. commit 9dfdd1fd4866a0ee113f7f2efdc499543cd0ad0e Author: Alan Garny '' Date: Tue Dec 17 20:31:38 2013 +0100 Various improvements to our splash screen. commit d1ac96de7664249113578b193e2639e201c3cc9c Author: Alan Garny '' Date: Tue Dec 17 20:23:01 2013 +0100 Moved some global functions in a better place '(from' CommonWidget to 'guiutils).' commit 39f6784a63c896999f07b80ae296fabd18da12a0 Author: Alan Garny '' Date: Tue Dec 17 20:04:19 2013 +0100 Some minor cleaning up of code. commit c3e2239ce66ca5b730f114006ec28a4547365a47 Author: Alan Garny '' Date: Tue Dec 17 17:58:30 2013 +0100 Added a splash screen. commit cab8e5fcadf7eaf91f86f257ab22b78eea1f5428 Author: Alan Garny '' Date: Tue Dec 17 10:56:21 2013 +0100 CellML tools are now available no matter which view is being used '(closes' '#253).' commit cbe188fdf2395193a64361178b22ac2155281a57 Author: Alan Garny '' Date: Mon Dec 16 18:32:54 2013 +0100 Minor updates to our documentation '[ci' 'skip].' commit e363b19b354296064ec6f662db4a55cda4727cac Author: Alan Garny '' Date: Mon Dec 16 18:25:47 2013 +0100 Slight updates to the user documentation '[ci' 'skip].' commit 105b0cbafb1ccd2d2ebb50d7137ac52bdd567f71 Author: Alan Garny '' Date: Mon Dec 16 18:11:50 2013 +0100 Keep track, from one session to another, of the zoom level used by our various QScintilla-based views. commit 68e591d5ac16474dc86a9d8416e9df74ed6451b5 Author: Alan Garny '' Date: Mon Dec 16 17:56:03 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 4e642958b69780ffde38351ab9439cc6afbb32a1 Author: Alan Garny '' Date: Mon Dec 16 17:30:13 2013 +0100 Our various QScintilla-based views '(i.e.' Raw, RawCellML and 'PrettyCellML)' use the same zoom level for all the files they edit. commit de1bbd45a9be6119cc6b2c8e5076471be89f4595 Author: Alan Garny '' Date: Mon Dec 16 10:33:15 2013 +0100 Allow the resetting of 'QScintillaWidget'\''s' font size. commit 293d290285721b5ce773608a0beac072b23d7b1c Author: Alan Garny '' Date: Mon Dec 16 10:20:56 2013 +0100 Slight updates to our developer documentation '[ci' 'skip].' commit 44733a87440f62717c1010ae00fecce74632194e Author: Alan Garny '' Date: Mon Dec 16 09:57:35 2013 +0100 Slight update to QScintilla '[ci' 'skip].' commit 6ed15fefc6e7012d5586ebaa7c0c16c5dc14d178 Author: Alan Garny '' Date: Sun Dec 15 10:13:43 2013 +0100 Fixed a small issue with QScintilla. commit a3f36ac9db84e85c44df8bdff4a1ed7c5e675dcb Author: Alan Garny '' Date: Sun Dec 15 09:56:51 2013 +0100 Some minor cleaning up of various files '[ci' 'skip].' commit d006c3ad634966ae20be4beed09c5f06865a3758 Author: Alan Garny '' Date: Sun Dec 15 09:35:57 2013 +0100 Upgraded QScintilla to the latest snapshot available '(14' December '2013),' which among other things addresses the Retina issue '(#248).' For now, at least, QScintilla disables buffered drawing on Retina displays. commit 5cca6328dd963442f70e8398795282ae10d66a03 Author: Alan Garny '' Date: Fri Dec 13 16:57:08 2013 +0100 Re-added a Qt plugin '(clearly' important for the shape of buttons on OS X, at 'least)' '[ci' 'skip].' commit f1ca37c3d87e6bbc8df7519871910c154cd35283 Author: Alan Garny '' Date: Fri Dec 13 16:49:36 2013 +0100 Hopefully done with properly deploying Mac Extras on OS X '[ci' 'skip].' commit e083ac14659a7883354c599a5dbb19d770e575b0 Author: Alan Garny '' Date: Fri Dec 13 16:08:09 2013 +0100 Had forgotten to deploy Mac Extras on OS X '[ci' 'skip].' commit 45968f48f7eb78e9bbae0ffed81aaf2ccbc3f16c Author: Alan Garny '' Date: Fri Dec 13 15:21:06 2013 +0100 Added a missing Qt library for deployment on Windows and Linux '[ci' 'skip].' commit 16975c462f5b5973eeeddf228d7a9a7a7361229a Author: Alan Garny '' Date: Fri Dec 13 15:06:18 2013 +0100 Fixed an issue with the MathML renderer in Qwt when using Qt 5.2. commit 1864feb6c5e5e7b83ecfc726fc02f13eba470a81 Author: Alan Garny '' Date: Fri Dec 13 14:42:45 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 95d89bdca3b7d19e3d0bf9b8ac7aeac80c606747 Author: Alan Garny '' Date: Fri Dec 13 14:12:49 2013 +0100 Removed some Qt plugins when deploying OpenCOR '[ci' 'skip].' commit 01f79972250e57a248b4624a0d93a77194d14463 Author: Alan Garny '' Date: Fri Dec 13 14:12:33 2013 +0100 Removed some Qt plugins when deploying OpenCOR '[ci' 'skip].' commit 6e10a0548384e2763ec92270ddf618dcec3f40f2 Author: Alan Garny '' Date: Fri Dec 13 13:23:18 2013 +0100 Fixed a small issue with QScintilla on OS X '[ci' 'skip].' commit a501b40490e21e6f797a4f0821da7f376d1d7d13 Author: Alan Garny '' Date: Fri Dec 13 11:55:25 2013 +0100 Fixed a small issue with QScintilla on OS X '[ci' 'skip].' commit da9c76641023216e0a39479c97e312959f287add Author: Alan Garny '' Date: Fri Dec 13 09:56:50 2013 +0100 Some work towards building OpenCOR with Qt 5.2. commit 11b09c136f452a53ef32a2c546c535e1acd4710a Author: Alan Garny '' Date: Thu Dec 12 19:30:26 2013 +0100 Slight update to the developer documentation '(Xcode' got 'updated)' '[ci' 'skip].' commit eb4a0d64ddb820825f5ec0487b43772ee46689a8 Author: Alan Garny '' Date: Thu Dec 12 17:36:20 2013 +0100 Updated the developer documentation '(but' not yet the source 'code),' now that Qt 5.2 is out '[ci' 'skip].' commit 3b73a2a927cda034f0ef2dd876d66dfcc92fed5e Author: Alan Garny '' Date: Thu Dec 12 17:31:14 2013 +0100 Fixed a recently introduced issue with our packaging of OpenCOR on OS X. commit 0c8bac827ef6ca83fd5274fe830f6af339994835 Author: Alan Garny '' Date: Thu Dec 12 17:18:53 2013 +0100 Some minor improvements to the building '(without' 'packaging)' of OpenCOR on OS X '[ci' 'skip].' commit 3d8d1f9fea9a4d9eb2abc07aab2237367d920f57 Author: Alan Garny '' Date: Thu Dec 12 16:59:03 2013 +0100 Some minor improvements to the building '(without' 'packaging)' of OpenCOR on OS X '[ci' 'skip].' commit 0a38e98e40dfafd4c27c5173b3acfa288140cc85 Author: Alan Garny '' Date: Thu Dec 12 16:24:40 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit 3bdad2901b7df7d675180e09fc3991ba9999fe8e Author: Alan Garny '' Date: Thu Dec 12 13:23:26 2013 +0100 Cleaned up the 'wheelEvent()' method of SingleCellViewGraphPanelPlotWidget. commit e5efef968527112957f1b5b724d3dd023a52e73e Author: Alan Garny '' Date: Thu Dec 12 13:15:40 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit 97b5da82fce435d6c2a2f021903cdafa3b8929eb Author: Alan Garny '' Date: Thu Dec 12 11:36:01 2013 +0100 Added support for increasing/decreasing the font size using the wheel in QScintillaWidget. commit a49580704cca4d1b055541c1fe6c1973ee2e5b33 Author: Alan Garny '' Date: Wed Dec 11 18:37:19 2013 +0100 Some minor improvements to the building '(without' 'packaging)' of OpenCOR on OS X '[ci' 'skip].' commit ff6647a1de3bde770737291fe1ddd25338214a98 Author: Alan Garny '' Date: Wed Dec 11 17:20:38 2013 +0100 Minor update to the user documentation '[ci' 'skip].' commit cb1dd3417d8f427c50152f05febec4617db084cf Author: Alan Garny '' Date: Wed Dec 11 14:13:07 2013 +0100 Some minor cleaning up. commit 49b36f8286b42bf8806d60b184caf7008c8cbc46 Author: Alan Garny '' Date: Wed Dec 11 11:58:02 2013 +0100 Some minor cleaning up. commit e6af186a8749efbec92f9793a55ea8d526f5a989 Author: Alan Garny '' Date: Wed Dec 11 11:15:43 2013 +0100 Some '(initial)' work on our PrettyCellMLView plugin '(#17).' commit 09b702df816b8920e1156da24d66f2dfb6f5e539 Author: Alan Garny '' Date: Wed Dec 11 11:04:47 2013 +0100 Slight update to the user documentation '[ci' 'skip].' commit 1753772040e1fdf393f5c8b40c4af62749948c83 Author: Alan Garny '' Date: Tue Dec 10 19:19:11 2013 +0100 Fixed the blurry text issue with QScintilla on Retina displays '(closes' '#248).' commit e61260564d1cca908df454cd8ed2b091359fc1b2 Author: Alan Garny '' Date: Tue Dec 10 11:37:25 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 1a312bccdeb82b898ec201c2a13fefd8ba2f242d Author: Alan Garny '' Date: Mon Dec 9 19:00:15 2013 +0100 Minor cleaning up '[ci' 'skip].' commit 1e62d2ca08fa2364f1542b39c97d4e8e3e37157c Author: Alan Garny '' Date: Fri Dec 6 16:11:14 2013 +0100 'Don'\''t' actually need to set NSHighResolutionCapable to true '(on' OS 'X)' since 'it'\''s' the default value '[ci' 'skip].' commit ba301fb008c766f277d5e6b4596e61721eda6b03 Author: Alan Garny '' Date: Thu Dec 5 11:34:53 2013 +0100 Improved the implementation of our 'Core::doNothing()' method. commit 37a837a8564efb1276adb44363dbb5cd01ef2697 Author: Alan Garny '' Date: Wed Dec 4 18:48:50 2013 +0100 New snapshots. commit ab72b60616547e292977c2d59bd8c4819a948ffd Author: Alan Garny '' Date: Wed Dec 4 18:42:19 2013 +0100 Our ''\''do' 'nothing'\''' loop function still got optimised by GCC, so explicitely asked for no optimisations on Linux. commit 9bdbbbfbca84753e20c2cc15f0f9fabb720c17af Author: Alan Garny '' Date: Wed Dec 4 18:30:24 2013 +0100 Got our ''\''do' 'nothing'\''' loop to work properly when compiling with optimisations. commit 6d77ffc568dd1e63fe79a0611a4f517bbc8548de Author: Alan Garny '' Date: Wed Dec 4 17:17:29 2013 +0100 Improved the delay between two data points '(closes' '#250).' commit 1c039a2a30d5b252ff8a8d181486cef5818f73d0 Author: Alan Garny '' Date: Wed Dec 4 16:48:48 2013 +0100 Some minor cleaning up. commit 33db8d52ba0ea08c72629def1c9efae0f95bc8cc Author: Alan Garny '' Date: Wed Dec 4 16:30:19 2013 +0100 Some minor cleaning up. commit a9b3c2cc96ed07a8a175967fa51748cfe4d95728 Author: Alan Garny '' Date: Wed Dec 4 13:53:39 2013 +0100 Slight improvement to the timing code '(and' not timing 'itself)' of a simulation. commit c99ea489f906db4abac60155cb6bc9153dbd8677 Author: Alan Garny '' Date: Wed Dec 4 11:30:31 2013 +0100 Some minor cleaning up. commit a85375bc72f8fd7d49baf4e821f8676fc475d176 Author: Alan Garny '' Date: Tue Dec 3 18:05:26 2013 +0100 Fixed a memory leak. commit 06e257f40b42abe1a9c2059670c491945b598a11 Author: Alan Garny '' Date: Tue Dec 3 11:19:55 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit c558a3694e7e47e941ae82e7ba21a60e95c0981a Author: Alan Garny '' Date: Mon Dec 2 15:41:57 2013 +0100 Some minor improvements to our Info.plist template '[ci' 'skip].' I was hoping that setting NSHighResolutionCapable to true would make a difference with regards to issue '#249,' but it $'doesn\342\200\231t\342\200\246' commit ec94ad2782df4420e2f4751a7d645c0bd39b3587 Author: Alan Garny '' Date: Mon Dec 2 12:52:55 2013 +0100 Upgraded QScintilla from version 2.7.2 to version 2.8. commit facaf3d6ffa55674e1731c0dc4633b2447c22225 Author: Alan Garny '' Date: Mon Dec 2 11:55:49 2013 +0100 Minor update to the developer documentation '[ci' 'skip].' commit 720566cc1b84c44d54e8e220763f6332beb7ad6f Author: Alan Garny '' Date: Thu Nov 21 10:27:21 2013 +0100 Some minor cleaning up. commit a65a7748926a9f97edf40026eeb189e51c3f0eb2 Author: Alan Garny '' Date: Wed Nov 20 14:44:56 2013 +0100 Minor improvement to our downloads page. commit 26137d0152ff2e6d7eadc7b06f0e69b5854fccf4 Author: Alan Garny '' Date: Wed Nov 20 14:36:52 2013 +0100 Minor improvement to our main CMake file. commit d10521187f9951fd50f09fab80cd7ae4dadfbf5f Author: Alan Garny '' Date: Wed Nov 20 13:32:53 2013 +0100 New snapshots. commit f646822107f0e616d27d20bdb1a72cd4e4770fdc Author: Alan Garny '' Date: Wed Nov 20 11:52:50 2013 +0100 Updated our downloads page '[ci' 'skip].' commit e9d9ac34c4a1b4d6a48caab7256ca9c7419b2c8e Author: Alan Garny '' Date: Wed Nov 20 11:18:04 2013 +0100 Updated our user documentation to account for our RawCellMLView and RawView plugins '[ci' 'skip].' commit 25caa2ea2c39585f5dea670717a501702ea73d3e Author: Alan Garny '' Date: Wed Nov 20 10:47:39 2013 +0100 Re-enabled some plugins that got disabled for version 0.2. Also some minor cleaning up. commit 92272bbb28a0f80b71055c6581e0b444a9d68eca Author: Alan Garny '' Date: Wed Nov 20 09:59:52 2013 +0100 Some minor cleaning up. commit 304cf6f4501823635fb223fbac768e90e233cecc Author: Alan Garny '' Date: Wed Nov 20 09:39:25 2013 +0100 Minor cleaning up '[ci' 'skip].' commit 1420b594f567fe70daf52b85e6863053f88344ed Author: Alan Garny '' Date: Tue Nov 19 19:16:24 2013 +0100 Version 0.2 released, back to generating snapshots '[ci' 'skip].' commit e8f78e917a02ea4688da612fdf0f6b40f886ef8d Author: Alan Garny '' Date: Tue Nov 19 17:19:17 2013 +0100 Version 0.2. commit e4fc14dbfcfc6b2a89fdd7ade55eaf4c9f3c45d6 Author: Alan Garny '' Date: Tue Nov 19 17:02:50 2013 +0100 SingleCellView plugin: 'don'\''t' remove all the graphs when no files are left open. Indeed, if after having closed all files, we decide to open one, we might then be happy to have the graphs still $'there\342\200\246' commit a1c20ecdc3a3259bf307a2395db82980cb8fc0a9 Author: Alan Garny '' Date: Tue Nov 19 16:56:40 2013 +0100 Fixed an issue with reloading files in the SingleCellView plugin, resulting in a slight improvement to our GUI interface. commit a801d21cafb33e06303fbdbef7c810afcb577127 Author: Alan Garny '' Date: Tue Nov 19 16:51:15 2013 +0100 Minor improvement to our CellML support plugin. commit 1c6156fe86f414bbfc92a6120a4a4ab71dd86ca8 Author: Alan Garny '' Date: Tue Nov 19 13:03:42 2013 +0100 Slowly getting ready for version 0.2. commit 034a90d49e1af5b1999c001bc8644c2e57d0316c Author: Alan Garny '' Date: Tue Nov 19 11:54:47 2013 +0100 Slowly getting ready for version 0.2. commit a4220e5e6f006f739c319894e00d1d998efe4817 Author: Alan Garny '' Date: Tue Nov 19 11:32:22 2013 +0100 Slowly getting ready for version 0.2. commit 4f00c79695f4784c5dc358127d6c5266702ac21a Author: Alan Garny '' Date: Tue Nov 19 11:11:36 2013 +0100 Some minor cleaning up. commit 1137eda200e4e3a7bc783d0692d4f5f4a1eebd2e Author: Alan Garny '' Date: Tue Nov 19 09:27:05 2013 +0100 Replaced a couple of ''\''static' const 'QString'\''' to ''\''static' const 'auto'\''.' Had missed those since they are in a plugin that we disabled for version 0.2. commit c2dcd9fc7a78e79a57c700d55c5b7ee6c210396a Author: Alan Garny '' Date: Mon Nov 18 19:59:29 2013 +0100 Some minor improvements to the formatting of a plugin error. commit 4b28a37ea0fc1b2a4c784ce450309cd98622df28 Author: Alan Garny '' Date: Mon Nov 18 19:29:25 2013 +0100 Fixed some issues that got reintroduced when working on our building the CellML API. commit 7ad952bb9ea7acc30779aacc2e03d109b410da7a Author: Alan Garny '' Date: Mon Nov 18 17:29:29 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit fb3a42e8ac1d3356f5f2328ef9c193c097f129f0 Author: Alan Garny '' Date: Mon Nov 18 16:57:54 2013 +0100 Tell the user why a plugin 'couldn'\''t' be loaded, should that happen. commit d8c7eb3284d23bf8ec9160b5af3b08cbf1b1e723 Author: Alan Garny '' Date: Mon Nov 18 16:56:57 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 2686142affa3fbfe45c12cc34627837655c55acd Author: Alan Garny '' Date: Mon Nov 18 16:34:42 2013 +0100 Some minor cleaning up. commit dce9946d82879127624c8e329e787548777135b2 Author: Alan Garny '' Date: Mon Nov 18 16:32:40 2013 +0100 Updated the LLVM binaries on Windows, now that we use C++11 to build OpenCOR. commit f7c826ba980de9f8e3d63c3ba4b1ee3a8c238ba5 Author: Alan Garny '' Date: Mon Nov 18 14:55:14 2013 +0100 Updated the CellML API binaries on Windows and Linux, and the LLVM binaries on Linux, now that we use C++11 to build OpenCOR. commit 85db3ca13eafb75fbd6dd0d047f9362d59c70d60 Author: Alan Garny '' Date: Mon Nov 18 13:48:05 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit f7572a8026f60a61317069f3c2b15259568b4b6c Author: Alan Garny '' Date: Mon Nov 18 11:52:27 2013 +0100 Update the CellML API and LLVM binaries on OS X, now that we use C++11 to build OpenCOR. commit bab14bc6fe954634dd293fdc052aa00e74471169 Author: Alan Garny '' Date: Sat Nov 16 01:12:45 2013 +0100 Some minor cleaning up. commit 19c161e9ea86876710ddd213a365c7d7aab92344 Author: Alan Garny '' Date: Sat Nov 16 00:56:16 2013 +0100 Some minor cleaning up. commit c8dc25964c912582e72f646f1691aa885b632c6b Author: Alan Garny '' Date: Sat Nov 16 00:41:21 2013 +0100 On OS X, make sure that we use at least the Mac OS X 10.7 SDK. commit 7fff25d351dfb8da12aa65a1e2c667968568d77b Author: Alan Garny '' Date: Sat Nov 16 00:40:40 2013 +0100 Some minor cleaning up of common CMake file '[ci' 'skip].' commit 5f7ee80321a836d6f6aa988252a2a24503df4dd3 Author: Alan Garny '' Date: Fri Nov 15 17:07:06 2013 +0100 Some minor cleaning up. commit 94466165325b0881abd86cab1b56fefc13bd2988 Author: Alan Garny '' Date: Fri Nov 15 13:38:24 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit c3403e1f11ab2798bf81f7c8fff926ff95eb18d1 Author: Alan Garny '' Date: Fri Nov 15 13:32:59 2013 +0100 Trying to use C++11 '[ci' 'skip].' commit 29d9ac739083abe885c8a369d2ff411411d2a0f1 Author: Alan Garny '' Date: Fri Nov 15 13:29:45 2013 +0100 Trying to use C++11 '[ci' 'skip].' commit 5d13460c09b649fd0333841471b8edbca24b49ba Author: Alan Garny '' Date: Fri Nov 15 13:28:57 2013 +0100 Trying to use C++11 '[ci' 'skip].' commit d7010b48b9b23a9794998dbc94a86c3b3b45a13d Author: Alan Garny '' Date: Fri Nov 15 13:20:55 2013 +0100 Trying to use C++11 '[ci' 'skip].' commit 32d58feecfcd76456058f1f2f2dddce016bdeb25 Author: Alan Garny '' Date: Fri Nov 15 13:12:19 2013 +0100 Trying to use C++11 '[ci' 'skip].' commit 159baba26bb897fb3a91fbfb72ad2ac6776aae0c Author: Alan Garny '' Date: Thu Nov 14 18:51:09 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit dd4e36189fdb672fddd0c7698b9696ff4a4a782f Author: Alan Garny '' Date: Thu Nov 14 18:40:05 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 2802d608d14f1082039b50374f8f762ebd438c90 Author: Alan Garny '' Date: Thu Nov 14 18:38:33 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 4d06bfadefa8f107ab368d55e3634c6c6842d0f2 Author: Alan Garny '' Date: Thu Nov 14 18:23:39 2013 +0100 Addressed a gcc limitation when it comes to suppressing warnings. commit ad8156fba3d46feea0e2d8724b8311ab12743aec Author: Alan Garny '' Date: Thu Nov 14 17:18:59 2013 +0100 Some minor improvements to our compiler flags strategy '[ci' 'skip].' commit b9bbde26d4afb69a3404447f8e01dbe48df5dd91 Author: Alan Garny '' Date: Thu Nov 14 17:06:30 2013 +0100 Some minor improvements to our compiler flags strategy '[ci' 'skip].' commit 53939688a75f82cd925267240d3b804932c64060 Author: Alan Garny '' Date: Thu Nov 14 16:43:06 2013 +0100 Got our latest commit to build on Windows '[ci' 'skip].' commit 9363e58e0cb84efe0021e909bdab8ccb1e881735 Author: Alan Garny '' Date: Thu Nov 14 15:44:12 2013 +0100 Some minor cleaning up of code '(to' respect our coding 'style)' '[ci' 'skip].' commit 15c126ecec9b45f5b04b09c8869158589e680e57 Author: Alan Garny '' Date: Thu Nov 14 15:14:26 2013 +0100 Some updates to our developer documentation '[ci' 'skip].' commit a243ccda43f0bc84b3086abf37cdf010c965357d Author: Alan Garny '' Date: Thu Nov 14 13:13:05 2013 +0100 Some minor cleaning up of code '(to' respect our coding 'style).' commit 44ab2eb2db3c16922716ad3e5eda651112f2c61e Author: Alan Garny '' Date: Thu Nov 14 13:13:00 2013 +0100 Some updates to our developer documentation '[ci' 'skip].' commit 1e78f449bca5ec1cd41f5f5762a52c9f5cb10e76 Author: Alan Garny '' Date: Thu Nov 14 11:13:00 2013 +0100 Some minor cleaning up of code '(to' respect our coding 'style).' commit df7f11d64d8f4b08b698baaba582b99524cba93f Author: Alan Garny '' Date: Wed Nov 13 18:59:06 2013 +0100 Some updates to our developer documentation '[ci' 'skip].' commit 5eb7264c080318e446c8d8e23d69e7701ec661b3 Author: Alan Garny '' Date: Wed Nov 13 18:01:14 2013 +0100 Slight improvement to our plugins window. commit f0dac87a19ad38c98e57c3fb71448517ab8c7b58 Author: Alan Garny '' Date: Wed Nov 13 17:56:40 2013 +0100 Slight improvement to our plugins window. commit 071056b9e5cc10c0a71db0fe069843ab29d0ed76 Author: Alan Garny '' Date: Wed Nov 13 17:39:02 2013 +0100 Some updates to our user documentation '[ci' 'skip].' commit 5456061d16c06e119de2fb951fe28f748308232d Author: Alan Garny '' Date: Wed Nov 13 17:13:45 2013 +0100 Some updates to our user documentation '[ci' 'skip].' commit 00aaa57aea4ca8c2232df6413181f276be70f704 Author: Alan Garny '' Date: Wed Nov 13 16:35:32 2013 +0100 Some updates to our user documentation '[ci' 'skip].' commit a88e1b069b489e70ff4f81f146d4c4bfd55867e6 Author: Alan Garny '' Date: Wed Nov 13 14:53:30 2013 +0100 Re-disabled some plugins in preparation for version 0.2. commit 40bcbbb853c02fc5c9838f3fcb7bcaaa8deffa2e Author: Alan Garny '' Date: Wed Nov 13 14:48:38 2013 +0100 Some updates to our user documentation '[ci' 'skip].' commit 034880c84a6d60a8c2f1030c46103da892917966 Author: Alan Garny '' Date: Wed Nov 13 13:52:53 2013 +0100 Got the Windows CLI version of OpenCOR to work again '(following' some of our minor 'refactoring).' commit 3664c11381f64ba77bcea15a31ef68bb77fc0fad Author: Alan Garny '' Date: Wed Nov 13 11:57:16 2013 +0100 Some minor refactoring. commit 1afd313e5102e4d63210135a373a1b004ab8cd98 Author: Alan Garny '' Date: Wed Nov 13 11:42:05 2013 +0100 Some minor refactoring. commit 223e7716354ae3bd78e958e396752a479a3d0ee7 Author: Alan Garny '' Date: Wed Nov 13 11:07:53 2013 +0100 Moved some GUI utils to CLI utils. commit 3438d40faa1d6ea421115321cd7d13612ea4d0c7 Author: Alan Garny '' Date: Wed Nov 13 10:05:52 2013 +0100 Some minor refactoring. commit 73257aba37ca771c8d6896fabfaee74c1b251a16 Author: Alan Garny '' Date: Wed Nov 13 10:01:02 2013 +0100 Some minor improvements to our plugins window. commit 5bd49e12aae1db3aad29fd972df5add5cb3442b7 Author: Alan Garny '' Date: Tue Nov 12 18:27:30 2013 +0100 Updated the LLVM plugin on $'\020Windows' '[ci' 'skip].' commit 3f6875fe5172f44f57b4045ccfa483347f634cf1 Author: Alan Garny '' Date: Tue Nov 12 17:29:14 2013 +0100 Updated the LLVM plugin on $'\020Linux' and OS X. commit b4c648a5ca9a4832681584610b21bcec470872ef Author: Alan Garny '' Date: Tue Nov 12 17:23:29 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit aa3f5b34e79059947049e8d2f12994690879bc12 Author: Alan Garny '' Date: Tue Nov 12 17:01:46 2013 +0100 Temporarily re-enabling some plugins so we can make sure that everything works fine on all our supported platforms. commit 6c1bb121383b3d88e069670eeedfc8618a0c7fc7 Author: Alan Garny '' Date: Tue Nov 12 16:56:33 2013 +0100 Moved some plugins to their correct category. commit d81ee9f9f73dc58b5f2adf5df5730d005c39aa4c Author: Alan Garny '' Date: Tue Nov 12 16:46:01 2013 +0100 Added some new categories for our plugins. commit a0fc13df3ca7a3ef5f982518a01279c0addda7a3 Author: Alan Garny '' Date: Tue Nov 12 15:17:27 2013 +0100 Some minor work on our plugins window. commit 5b7f54a715b9679e5cfb9749f6506199943c1e1a Author: Alan Garny '' Date: Tue Nov 12 15:17:01 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 567057950838b00dff68e1fc281df7404c865916 Author: Alan Garny '' Date: Tue Nov 12 14:41:03 2013 +0100 Updated the LLVM plugin on OS X '[ci' 'skip].' commit 3a4dac12939bb60abcf79a695ab3bbee2d7bbaf0 Author: Alan Garny '' Date: Tue Nov 12 14:37:54 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit e5b0e9a547e742ccd9a0cc02ef244a9115d90db5 Author: Alan Garny '' Date: Tue Nov 12 14:23:32 2013 +0100 Some work on our plugin architecture '[ci' 'skip].' commit 5be1bb140824605239dbcbf74b661daff21a50ba Author: Alan Garny '' Date: Tue Nov 12 13:57:35 2013 +0100 Some minor cleaning up. commit 67552f51e1ad398049494588907613a546f5adea Author: Alan Garny '' Date: Mon Nov 11 11:14:04 2013 +0100 Some explanations about our ''\''new'\''' plugin information. commit d75fb1ec6268680d85756f1ccd32d49382b5267b Author: Alan Garny '' Date: Sun Nov 10 20:59:37 2013 +0100 Updated our LLVM binaries since we removed the CLI support information in our plugins. commit f067a199fad8eee749783142fd3a7753929b5989 Author: Alan Garny '' Date: Sun Nov 10 19:58:45 2013 +0100 Some further cleaning up of our plugin information, resulting in the addition of the CLI interface. commit 3f4c3b36048ece6ae0ee032660d0f02953cf711b Author: Alan Garny '' Date: Sun Nov 10 18:16:42 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit a35cee80110dc571c8a3b7ed3abb09b391727962 Author: Alan Garny '' Date: Sun Nov 10 18:16:21 2013 +0100 Some minor cleaning up of our CMake files. commit ae57e32214eb75b77dbdf2a67de168783ffc0924 Author: Alan Garny '' Date: Sun Nov 10 15:46:39 2013 +0100 Updated our LLVM binaries since we removed the interface version in our plugins. commit 3ecc4f6d3c41c2d6c41369bfa33a52c14ff0ee4d Author: Alan Garny '' Date: Sun Nov 10 15:44:41 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit 1450730a4a34154fc98bf827c83df78652d3b22c Author: Alan Garny '' Date: Sun Nov 10 13:14:06 2013 +0100 'Don'\''t' use an interface version for our plugins '[ci' 'skip].' Our plugin interface is hardly going to change and if it was ever to change then plugin developers would just have to update their plugin. commit 0aada5e661d1e4d64c400797e800089f997ad69b Author: Alan Garny '' Date: Sun Nov 10 13:08:33 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit 56e4ab175f8c1fda4f52c00194876d837ad1b8d8 Author: Alan Garny '' Date: Fri Nov 8 18:16:17 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit be0d145a9ea7a741aa50699830c272ea70fb032f Author: Alan Garny '' Date: Fri Nov 8 16:34:55 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit 4ba4d23fc3af38d7b70b03efe96252de69cb1e19 Author: Alan Garny '' Date: Fri Nov 8 16:14:27 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 13ffeef8367cb1a0d14db16a326c30096555c9fb Author: Alan Garny '' Date: Fri Nov 8 15:58:40 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit 926472de89e02f8c7a20ca2a9c85abcdc268dcbf Author: Alan Garny '' Date: Fri Nov 8 13:56:34 2013 +0100 Some work on our developer documentation '[ci' 'skip].' commit 4b319d257ba9541cfabc3396496b7f02da778086 Author: Alan Garny '' Date: Fri Nov 8 11:34:32 2013 +0100 Some minor cleaning up. commit 2cd4112d85839b09d5c1dd2023da6af51301eb23 Author: Alan Garny '' Date: Fri Nov 8 10:45:32 2013 +0100 Some work on our user and developer documentations '[ci' 'skip].' commit 0fe8c7014f26d2a259516c91ec75595a29368a29 Author: Alan Garny '' Date: Thu Nov 7 16:30:29 2013 +0100 Some minor work on our developer documentation '[ci' 'skip].' commit 848fda3f7742d068b56557c11f5365c1f4de692b Author: Alan Garny '' Date: Thu Nov 7 16:30:12 2013 +0100 Some work on our user documentation '[ci' 'skip].' commit 9af4a04c5278a4e5d2853c0f3c9a00401abc5f1a Author: Alan Garny '' Date: Wed Nov 6 18:01:26 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 809144578043f77a292022ae22279bf1fa163c51 Author: Alan Garny '' Date: Wed Nov 6 17:52:30 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 148ee6d3bff133e83347bcd24c2c176556506568 Author: Alan Garny '' Date: Wed Nov 6 17:31:42 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 4784e1d53aba5d397c4a04a911db3664a17741c8 Author: Alan Garny '' Date: Wed Nov 6 17:21:04 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 81e70be8d883db6d28777d1e45c13a03f25393ea Author: Alan Garny '' Date: Wed Nov 6 17:00:50 2013 +0100 Minor fixes for our CellMLAnnotationView plugin. commit 0f93591b12eb74198996ad13edf546b0386d6082 Author: Alan Garny '' Date: Wed Nov 6 16:39:14 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 48b1cca3603b794539511fee9a06d6d4c6e03fcb Author: Alan Garny '' Date: Wed Nov 6 16:38:55 2013 +0100 Minor fix for our CellMLAnnotationView plugin. commit ad93427158433c6f0411b8ed80823566dcf6924c Author: Alan Garny '' Date: Wed Nov 6 15:31:34 2013 +0100 Some minor cleaning up of our user documentation '[ci' 'skip].' commit 142c2c740aa960f784bb8ea9af3b71c5c88ef529 Author: Alan Garny '' Date: Wed Nov 6 15:01:00 2013 +0100 Updated some screenshots for the user documentation '[ci' 'skip].' commit c177a09bf743c6025ca1ba4f583e8891c914079b Author: Alan Garny '' Date: Wed Nov 6 14:48:21 2013 +0100 Some minor cleaning up. commit 303633288fd329d281371fda5da04360c750c632 Author: Alan Garny '' Date: Wed Nov 6 14:30:24 2013 +0100 Updated some screenshots for the user documentation '[ci' 'skip].' commit 652ea1d5a37c0eb2af4775f6b5b89421e78c9014 Author: Alan Garny '' Date: Wed Nov 6 14:16:36 2013 +0100 Updated our .gitignore file now that we have two more redistributable files for Windows '[ci' 'skip].' commit 50497e3cdc18cc09bcf0cd67e57f9282ca368e3c Author: Alan Garny '' Date: Wed Nov 6 14:10:08 2013 +0100 Added a couple of DLLs that are needed for the Windows package. This is so that the CellML Model Repository plugin can work properly since it now requires of SSL '(to' ignore the SSL 'certificate).' commit 6c6a36c8b3093218e629d15839b40743e1bea7ab Author: Alan Garny '' Date: Wed Nov 6 11:41:31 2013 +0100 Some minor cleaning up. commit f4a7164aede6fc7fa094962ba80fdb15f132fc16 Author: Alan Garny '' Date: Wed Nov 6 11:06:37 2013 +0100 Some minor cleaning up. commit 13897e0309ac89a7d0566cf22d6c60af4b4b556a Author: Alan Garny '' Date: Tue Nov 5 18:50:56 2013 +0100 Updated some of the user documentation '[ci' 'skip].' commit a2b892d58527e221f997c5c91b32c034b005a540 Author: Alan Garny '' Date: Tue Nov 5 18:36:00 2013 +0100 Recognise OS X 10.9 '(Mavericks).' commit 2861b2519c33166333fe3a032fedf735c5f9937c Author: Alan Garny '' Date: Tue Nov 5 17:54:37 2013 +0100 Updated our download page '[ci' 'skip].' commit 6cec62e3f5a4a5b8d1b19eeb463f70cf6d49d2d2 Author: Alan Garny '' Date: Tue Nov 5 11:58:52 2013 +0100 Updated our download page '[ci' 'skip].' commit 772957ba346ea9103f701e1a13fbb9debcc06898 Author: Alan Garny '' Date: Mon Nov 4 18:25:59 2013 +0100 Update our documentation. commit 1680cb8e7e21c01dc825b9d0a8eec1767bfe0607 Author: Alan Garny '' Date: Mon Nov 4 11:47:36 2013 +0100 Some minor updates to our documentation '[ci' 'skip].' commit 294e1d042115e4c15ebdbaa5df31d94d08dd1028 Author: Alan Garny '' Date: Thu Oct 31 19:00:13 2013 +0100 Minor update to our documentation readme file '[ci' 'skip].' commit f5f310a4c1986132ed22ed9347c3faedb399b2bc Author: Alan Garny '' Date: Thu Oct 31 18:33:22 2013 +0100 New snapshots. commit 2a0bd8e2264b00985f84f784ddb991d4b3ef692d Author: Alan Garny '' Date: Thu Oct 31 18:13:40 2013 +0100 Some work on renaming a file and its consequences on view plugins. commit cd6586bd0c93cbb74b42d2011e657fe100b46f46 Author: Alan Garny '' Date: Thu Oct 31 17:47:21 2013 +0100 Fixed an issue with view plugins when closing OpenCOR. commit a06846f46bcf724df6af523369f54ec4da980eff Author: Alan Garny '' Date: Thu Oct 31 15:43:15 2013 +0100 Some work on the reloading feature in the Raw view and Raw CellML view plugins. commit 9cd8be463ff1747dcad5fcdde22ec3c53cb8162c Author: Alan Garny '' Date: Thu Oct 31 15:32:46 2013 +0100 Some minor cleaning up. Also fixed an issue with the reloading of a file in the Single Cell view plugin. commit bc4632af3697f93d95409bd7a5095e2b73e97f3c Author: Alan Garny '' Date: Thu Oct 31 13:22:41 2013 +0100 Only clean up the Qt frameworks when packaging OpenCOR. commit 62f4da3c4be00420441b4d90a5eaae8515ded24b Author: Alan Garny '' Date: Thu Oct 31 10:50:40 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 3b678cb6c2f7561b2c80ac4fa73dc1309fc672c9 Merge: 2653217f4 452d78e6d Author: Alan Garny '' Date: Thu Oct 31 10:06:39 2013 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 2653217f40f3f3e96b3e578ad1029451f403aaea Author: Alan Garny '' Date: Thu Oct 31 09:28:27 2013 +0100 Minor update to our developer documentation '[ci' 'skip].' commit 452d78e6d6c99633feee06f39d3fc6be851fe098 Author: Alan Garny '' Date: Wed Oct 30 23:33:53 2013 +0100 Minor change to our .travis.yml file '(mainly' wanted to change its hidden attribute on 'Windows).' commit 6c059d0f17de2d6b125388941e7ce94842c75440 Author: Alan Garny '' Date: Wed Oct 30 19:45:48 2013 +0100 Fixed various minor issues with the setting of the file tab icon in our Single Cell view. commit f9e303096309a155d4c8e774cdfaa9fba8148c01 Author: Alan Garny '' Date: Wed Oct 30 19:22:13 2013 +0100 Minor improvements following an Xcode anaylsis. commit 412fdd772ca47dbeca4bc4c25154850f5ea6050e Author: Alan Garny '' Date: Wed Oct 30 19:05:23 2013 +0100 Minor improvements following an Xcode anaylsis. commit dbc461291e6c4bba5fcb40ac618263417524710a Author: Alan Garny '' Date: Wed Oct 30 18:52:16 2013 +0100 Minor improvements following an Xcode anaylsis. commit f4682b158504b2c61eca1acfc68a09f2d2505465 Author: Alan Garny '' Date: Wed Oct 30 17:57:50 2013 +0100 Minor improvements following an Xcode anaylsis. commit 5a379545d22a9085abbf80d36eac0f89ab58d83d Author: Alan Garny '' Date: Wed Oct 30 14:51:02 2013 +0100 Minor improvements following an Xcode anaylsis. commit 8f5fdfaf5143fbebbd771ea6437bd96c2db28248 Author: Alan Garny '' Date: Wed Oct 30 13:13:46 2013 +0100 Fixed an issue with building LLVM on OS X. Could that issue be a result of our build system having 'changed?...' commit 0ab2e559517d418e10bd3d5d8953712fd7ba18dd Author: Alan Garny '' Date: Wed Oct 30 11:52:03 2013 +0100 Fixed an issue with our OS X bundle now that we have modified our build system. commit 0e93e06a0a9cb745310b585c77ada32d540fb22c Author: Alan Garny '' Date: Wed Oct 30 10:58:26 2013 +0100 Trying to be too smart... commit 810fafe2f8515659fc941439873ff701f5fd0aa6 Author: Alan Garny '' Date: Wed Oct 30 10:49:57 2013 +0100 Allow offscreen execution only if the tests are built on Travis CI. commit 64a4dd3021cad6bb05637977e8e237d342de91c1 Author: Alan Garny '' Date: Wed Oct 30 10:31:45 2013 +0100 Allow offscreen execution only if built on Travis CI. commit a3589d5a893ea974b57f78a30b19a1c0243b44b6 Author: Alan Garny '' Date: Wed Oct 30 10:16:53 2013 +0100 Fixes an issue with our tests now that we have modified our build system. commit fd7548eeb4db9c457440815d0109443a25e04a7a Author: Alan Garny '' Date: Wed Oct 30 10:05:24 2013 +0100 Re-arranged where update our CMake policies '(we' still had the warnings on 'Windows)' '[ci' 'skip].' commit 3ff0917443ffbf7848e621dfb040523308c6b290 Author: Alan Garny '' Date: Wed Oct 30 09:26:22 2013 +0100 Some minor work on our common.cmake file. commit a03117eb45a8254f52b32d4f33473760992a1c21 Author: Alan Garny '' Date: Wed Oct 30 00:25:00 2013 +0100 Some minor cleaning up of some of our build-related files. commit c484906e0dd533454f393761bdf6935f175315a9 Author: Alan Garny '' Date: Tue Oct 29 19:37:23 2013 +0100 Some minor cleaning up '[ci' 'skip].' commit 262d076536f28e28d1cd666e776a35ea65446b90 Author: Alan Garny '' Date: Tue Oct 29 19:11:51 2013 +0100 Hopefully fixes our tests on 'Linux!' 'Doesn'\''t' make sense to me since OpenCOR was built in the same way as the tests, yet the LLVM-based tests 'wouldn'\''t' work... commit 240dc8475bebadaa1d2121c6af606b274d40e0ff Author: Alan Garny '' Date: Tue Oct 29 17:15:59 2013 +0100 Fixed a minor CMake issue for Windows. commit f45fb5903978a0dc0c332796d8a469344e4317f3 Author: Alan Garny '' Date: Tue Oct 29 16:53:02 2013 +0100 Language files can safely be generated in CMAKE_BINARY_DIR. Also fixed a minor issue we just introduced with packaging on Linux. commit 3a4e47a009ecdb046b23804f1acc8a2383be3a1f Author: Alan Garny '' Date: Tue Oct 29 16:39:09 2013 +0100 Cleaned up some of our CMake files. commit 9515dd1b777681a6c50c320ac81f9a8589dda52c Author: Alan Garny '' Date: Tue Oct 29 16:14:24 2013 +0100 Some minor work on our common.cmake file. commit 8211fd5b6a582fcc845397d461fd1a8f3fc06186 Author: Alan Garny '' Date: Tue Oct 29 16:08:31 2013 +0100 Cleaned up some of our CMake files. commit 2769109ae05c72a4de2b73d46fbe6807b63e4ec0 Author: Alan Garny '' Date: Tue Oct 29 15:05:53 2013 +0100 Addressed an issue that prevented us from closing OpenCOR using Ctrl+Q on Linux. commit 578b4aa8982833d7fb5a5d9d220181d71e46b80d Author: Alan Garny '' Date: Tue Oct 29 14:23:35 2013 +0100 Cleaned up some of our CMake files. commit 29701e00c94aa11d40bca460472c3b626790a76b Author: Alan Garny '' Date: Tue Oct 29 11:15:19 2013 +0100 Some minor cleaning up. commit 03aab3339875b3517dadea1a854d3c3afaf7412e Author: Alan Garny '' Date: Tue Oct 29 10:49:58 2013 +0100 Some minor cleaning up. commit 58b01d249a12c6e79a22edba4e4804bf10e69f4e Author: Alan Garny '' Date: Tue Oct 29 10:22:01 2013 +0100 Some minor cleaning up. commit 21c8f5425cda1316ef6756f356269a859d4230e0 Author: Alan Garny '' Date: Mon Oct 28 16:03:58 2013 +0100 Minor correction to a comment '[ci' 'skip].' commit 74dbd01c3db3a0eece5e2de052a49a6a94b6f088 Author: Alan Garny '' Date: Mon Oct 28 15:24:04 2013 +0100 Fixed a small issue with the progress bar in our Single Cell view. commit 7df17c3e42216ae143afdedf786b9e1b01d15082 Author: Alan Garny '' Date: Mon Oct 28 12:48:24 2013 +0100 Some work towards reloading a file in the Single Cell view '(#159' and '#233)' '[ci' 'skip].' commit 9f7e89cf9f1c2e7098f8abfa2a1818949be265e3 Author: Alan Garny '' Date: Mon Oct 28 12:37:59 2013 +0100 Some work towards reloading a file in the Single Cell view '(#159' and '#233).' commit c95edcbc3c7bf5a92c4dbd9c540b1fbe0de0fd77 Author: Alan Garny '' Date: Mon Oct 28 12:29:10 2013 +0100 Some work towards reloading a file in the Single Cell view '(#159' and '#233).' commit 917c094d7adfe3fbc7d5f07aa412597ba9cae852 Author: Alan Garny '' Date: Mon Oct 28 10:27:15 2013 +0100 Added another test for our CellMLTools plugin. commit 35e75ac0a1735780b0c54935e86abc8511769ae2 Author: Alan Garny '' Date: Sun Oct 27 19:52:53 2013 +0100 Minor improvement to our CellMLSupport plugin. commit 30edc824606b73dcbf77b4cad4976d775ab351dc Author: Alan Garny '' Date: Sun Oct 27 19:19:09 2013 +0100 Some minor cleaning up. commit 33dce7e6b599adfbe998ad2eee7879e8016133ae Author: Alan Garny '' Date: Sun Oct 27 13:49:44 2013 +0100 Some minor cleaning up. commit 9a5eeefbc3d5bd0149b271203cd8afd5117749a9 Author: Alan Garny '' Date: Fri Oct 25 17:48:05 2013 +0200 Some work towards reloading a file in the Single Cell view '(#159' and '#233).' commit b6251c151b9d07bd8c43ee8c04a0d23106549e0d Author: Alan Garny '' Date: Fri Oct 25 17:34:52 2013 +0200 Some work towards reloading a file in the Single Cell view '(#159' and '#233).' commit f016ad1ae7e563e27a39e51fe70153987191840e Author: Alan Garny '' Date: Fri Oct 25 17:27:57 2013 +0200 Let a caller know whether a simulation-related action has been carried out. commit 3a1ffe23beb7ee6f0106bb2bf3398cb7cd8dd466 Author: Alan Garny '' Date: Fri Oct 25 16:36:08 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit 3325bae3ee5970d454d20e3d609503e6cb25fa90 Author: Alan Garny '' Date: Fri Oct 25 15:48:43 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit ffd6b14a0d406887f00cc5afc005f14d237624e7 Author: Alan Garny '' Date: Fri Oct 25 15:32:09 2013 +0200 Some minor cleaning up. commit 66070b476dff711fadd65b2598c8739c443e2fb8 Author: Alan Garny '' Date: Fri Oct 25 15:21:52 2013 +0200 Can now properly navigate the property editor widget using the keyboard '(closes' '#247).' commit 21d0a8399de5ad73dae605ec8597e9ec593ad8b4 Author: Alan Garny '' Date: Fri Oct 25 14:35:53 2013 +0200 Some minor cleaning up. commit 4ebada784ecd4656db1e0bb00de1335c36c60054 Author: Alan Garny '' Date: Fri Oct 25 14:10:08 2013 +0200 Some work towards reloading a file. The CellML Annotation view can now reload a file '(#159' and '#233).' commit a7f6d71e0fd2e32f369e606cc8152831943819bc Author: Alan Garny '' Date: Fri Oct 25 13:40:22 2013 +0200 Some minor cleaning up. commit 98d3857e262ae54cbc5a2d51867db3f2c2dea217 Author: Alan Garny '' Date: Fri Oct 25 12:01:42 2013 +0200 Some minor cleaning up. commit 726363916eb9966d359bff21ac426e7fab076a67 Author: Alan Garny '' Date: Fri Oct 25 11:53:23 2013 +0200 Some work towards reloading a file '(#159' and '#233).' commit 6b910a7ff28ab16ed20842ecaa76f32d4efcf842 Author: Alan Garny '' Date: Fri Oct 25 11:10:09 2013 +0200 Some work towards reloading a file '(#159' and '#233).' commit e867b0bfc341f4757c7e87cf221b495dc88c1911 Author: Alan Garny '' Date: Fri Oct 25 09:38:27 2013 +0200 Some work towards reloading a file '(#159' and '#233).' commit 2a980ebc614a622a31b579200ceff26f03d13b7d Author: Alan Garny '' Date: Thu Oct 24 17:16:04 2013 +0200 Some work towards reloading a file '(#159' and '#233).' commit dc9608182c9f40c33267a465fb85c9b7a461d70e Author: Alan Garny '' Date: Thu Oct 24 16:57:53 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit b548c1a3da54cd1beabc4c5c64201fba6762ef20 Author: Alan Garny '' Date: Thu Oct 24 16:21:04 2013 +0200 Some minor cleaning up. commit bc2da2e3d510ef7537026286caf5dee980c3dfa1 Author: Alan Garny '' Date: Thu Oct 24 15:58:08 2013 +0200 Some work towards reloading a file '(#233).' commit 51bd2cdbdd04e59ca0c4c88c2f35743987118862 Author: Alan Garny '' Date: Thu Oct 24 15:42:38 2013 +0200 Some work towards checking whether a file has been modified outside of OpenCOR '(#159).' commit 8e1be8c218b6b3a5eacab683925e9aad82c307b3 Author: Alan Garny '' Date: Thu Oct 24 15:24:30 2013 +0200 Fixed a problem with the initial value of model parameters not being shown '(closes' '#246).' commit 06f7bd14c2409740e2e0662e22f94bc23ff8ba10 Author: Alan Garny '' Date: Thu Oct 24 13:44:26 2013 +0200 Disabled some plugins for version 0.2 of OpenCOR. commit dd0c4b95314a2680fdeb05ecaa154f6c1cda987f Author: Alan Garny '' Date: Thu Oct 24 13:22:58 2013 +0200 Some minor cleaning up. commit 88c0e06fba7adb674db0ca2af69e727b7d084d9e Author: Alan Garny '' Date: Thu Oct 24 12:34:40 2013 +0200 Minor improvement to our File class. commit 927baa4805e62e133aecb1c364a41a6a9492ea48 Author: Alan Garny '' Date: Thu Oct 24 12:13:46 2013 +0200 Minor improvement to our File class. Also some minor cleaning up. commit b29509376c357b4b0349fd97a948d86e76245862 Author: Alan Garny '' Date: Thu Oct 24 11:40:51 2013 +0200 Allow any view to save a file under a new name '(not' only those that support at least one specific MIME 'type).' commit 050fdc529c6cf4d80b8b688de46b4a708a75e5ce Author: Alan Garny '' Date: Thu Oct 24 11:16:54 2013 +0200 Some refactoring. commit e9797a9758b065711bf702c70a80245f4446745e Author: Alan Garny '' Date: Thu Oct 24 10:47:03 2013 +0200 Can now save a file using the Single Cell view '(closes' '#245).' Also some minor cleaning up. commit e472b825bddef08a567a2b17cea48570d0c8d856 Author: Alan Garny '' Date: Thu Oct 24 10:44:10 2013 +0200 Some minor cleaning up. commit f82c8b9bb5b19d0e98aee47cb1bce5a0829e8db1 Author: Alan Garny '' Date: Wed Oct 23 18:23:44 2013 +0200 Handle the case where a file has been deleted outside of OpenCOR '(closes' '#244).' commit 03d158e310ca52605f03c9c78659e00e1c4d08e2 Author: Alan Garny '' Date: Wed Oct 23 17:09:21 2013 +0200 Slight improvement to our 'nativeCanonicalFileName()' method. commit b76e1ecfb28b1479a7500ed03fb7afe9c600735c Author: Alan Garny '' Date: Wed Oct 23 16:23:33 2013 +0200 Minor cleaning up. commit 2aa34cd41b86c217be22d8e2df5ed459ddc84870 Author: Alan Garny '' Date: Wed Oct 23 16:05:50 2013 +0200 Improved the way we check the SHA-1 value of a file. Also fixed our previous commit. commit 405789f54ceebeba4ad150209d49ec646ce18bac Author: Alan Garny '' Date: Wed Oct 23 15:31:14 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit 18b5ffcacba7d2e040f8fd89c4a27e17ff5a085e Author: Alan Garny '' Date: Wed Oct 23 15:03:04 2013 +0200 Slight improvement to our download page '[ci' 'skip].' commit 1708ed51a2342f9a51e74c307cfa25c817b932e7 Author: Alan Garny '' Date: Wed Oct 23 14:45:39 2013 +0200 Slight CSS improvement to our download page '[ci' 'skip].' commit 472fed8ecf1a2cf60ed04e02d5642e1a8b56cbda Author: Alan Garny '' Date: Wed Oct 23 13:53:32 2013 +0200 Minor update to our documentation following the release of OS X 10.9 '(Mavericks)' '[ci' 'skip].' commit 8ea5f73238ace01a3e5df696c18b9a5d083718a4 Author: Alan Garny '' Date: Wed Oct 23 13:48:19 2013 +0200 Minor update to our documentation following the release of OS X 10.9 '(Mavericks)' '[ci' 'skip].' commit d6c352999c852d2431ba4c36a4c115477e364d91 Author: Alan Garny '' Date: Wed Oct 23 13:45:21 2013 +0200 Some minor updates to our documentation following the release of OS X 10.9 '(Mavericks)' '[ci' 'skip].' commit b5ce840623e1795bff9e317f5c3b2e9922c4d3f0 Author: Alan Garny '' Date: Tue Oct 22 16:44:12 2013 +0200 Reverting to Xcode 4.6.3 since Xcode 5 'doesn'\''t' come with gdb anymore and lldb is not properly supported in Qt Creator. Also put back the version of NSIS that we actually use. '[ci' 'skip]' commit aeaec1557f831f9ee971ca42534acda48f44000d Author: Alan Garny '' Date: Tue Oct 22 11:47:49 2013 +0200 Slight update to the developer documentation '[ci' 'skip].' commit 873cf70a26b4ab4ecbb76fe4e99aca9f4fc291b8 Author: Alan Garny '' Date: Tue Oct 22 10:10:04 2013 +0200 Added some tests for our CellMLTools plugin. commit 09450b70b03763c4d46a252d8e91b5534d0cefa1 Author: Alan Garny '' Date: Mon Oct 21 20:09:03 2013 +0200 Fixed the issue with Travis CI. commit 07326f68b9a8706b3ada336cd48c1f84694421e7 Author: Alan Garny '' Date: Mon Oct 21 20:06:25 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit 25fb4a3afd2ff37bc2a05d643af2c07cb7a0ea2a Author: Alan Garny '' Date: Mon Oct 21 19:32:13 2013 +0200 Fixed a problem with running tests on Travis CI '(?).' commit e3734e0bafd13e21bf65e62675c5a0319590ace8 Author: Alan Garny '' Date: Mon Oct 21 19:21:54 2013 +0200 Added some tests for our CellMLTools plugin. commit b20183c7c67f0e7a48b854874de28ca704204547 Author: Alan Garny '' Date: Mon Oct 21 16:04:56 2013 +0200 Improved our maketests scripts. commit 7d470f3988d2785941e3dc7e94f33184dc3533ed Author: Alan Garny '' Date: Mon Oct 21 15:36:56 2013 +0200 Fixed a small issue with our CellMLTools tests on Windows. commit da6adb4fb363c853dfb344ef8fb9d7b7156ce772 Author: Alan Garny '' Date: Mon Oct 21 12:29:11 2013 +0200 Created a skeleton for some CellMLTools tests. commit b981e2d8bbe5a967911db924595c234c66a83acc Author: Alan Garny '' Date: Sun Oct 20 18:49:48 2013 +0200 Some minor work for building our tests. commit e4c5e87f4e0b0f364510c9727ef41313475cfe05 Author: Alan Garny '' Date: Sun Oct 20 18:44:10 2013 +0200 Some minor work for building our tests. commit 2f52b512d544ce6a7cc0c1a2f16731fb34ddc111 Author: Alan Garny '' Date: Sun Oct 20 18:33:26 2013 +0200 Some minor work for building our tests. commit 7e23db45be98e35619b78e8843697a29d086d7b6 Author: Alan Garny '' Date: Sun Oct 20 18:25:30 2013 +0200 Some minor work for building our tests. commit 97a828433f560aa233b8523b5bb3108291c434fb Author: Alan Garny '' Date: Sun Oct 20 18:04:54 2013 +0200 Some minor work for building our tests. commit 12141d4f94b8b04cef35356bb3d5662640a0b629 Author: Alan Garny '' Date: Sun Oct 20 16:04:54 2013 +0200 Cleaned up some code for the generation of our tests. commit 6e97f6122cb33b6fc487fcaefc61a0a77d6393b2 Author: Alan Garny '' Date: Sun Oct 20 15:09:52 2013 +0200 Some minor cleaning up. commit e6c3517c90323cb12af78a1d18e5a1200fd337ad Author: Alan Garny '' Date: Sun Oct 20 14:57:40 2013 +0200 Some minor cleaning up. commit 36804fcd9a86f0ec6af422463e53be78b1d06050 Author: Alan Garny '' Date: Sun Oct 20 14:45:25 2013 +0200 Oops, renamed a couple of functions which 'shouldn'\''t' have been 'renamed!' commit 1c75e4017fae8bd42595637fcfdafaa433747fa7 Author: Alan Garny '' Date: Sun Oct 20 14:39:02 2013 +0200 Slight refactoring of our tests framework. commit 8151dd4db783ae9dfed4f0420ad74555e5d34584 Author: Alan Garny '' Date: Sun Oct 20 13:49:42 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit 96a6251365a781cd972f58bd7eb90f831f08ed40 Author: Alan Garny '' Date: Sun Oct 20 13:21:35 2013 +0200 Slight improvement to our .travis.yml file. commit e1ff41e1f82a34de080d2ae17826fb3c091fb4fc Author: Alan Garny '' Date: Sun Oct 20 13:06:12 2013 +0200 Slight update to our .travis.yml file '[ci' 'skip].' commit 3b12443888bc2887e0a294f83252a57bfa05d29b Author: Alan Garny '' Date: Sun Oct 20 12:54:15 2013 +0200 Some minor cleaning up. commit 696c21053bedd2c8c58248a6dbe2c0366af07447 Author: Alan Garny '' Date: Sun Oct 20 12:37:01 2013 +0200 Some major refactoring for our plugin interfaces to ensure that a plugin cannot overlook one or several interfaces by mistake. commit dcda23c31fae7f8c333df86f9562122a80eca4c1 Author: Alan Garny '' Date: Sat Oct 19 09:39:43 2013 +0200 Some minor updates to our documentation '[ci' 'skip].' commit 42d4edcb6b15cd6eff2eda9dfdc7f559c47a44a6 Author: Alan Garny '' Date: Fri Oct 18 17:59:15 2013 +0200 Some minor refactoring. commit 3defdd6caada508863ffa10c44f53083e0c0a3e5 Author: Alan Garny '' Date: Fri Oct 18 16:29:11 2013 +0200 Some minor refactoring. commit 02706f9d26f394aa2609c710176303f276a92b2c Author: Alan Garny '' Date: Fri Oct 18 15:47:09 2013 +0200 Some minor refactoring. commit 4860db0c5889fbbace9c82519e9fc7e562420c4e Author: Alan Garny '' Date: Fri Oct 18 14:33:45 2013 +0200 Some updates to our documentation '[ci' 'skip].' commit 3c86e4293c9ce22278309366066bfa4ce38e23d5 Author: Alan Garny '' Date: Fri Oct 18 11:49:57 2013 +0200 Some minor cleaning up. commit f7417c4bff9b9eedf21c5e47d83509fbc503d335 Author: Alan Garny '' Date: Thu Oct 17 17:43:57 2013 +0200 Slight update to our developer documentation '[ci' 'skip].' commit a895e1c8ffb6ed64ad953a5cad2b5723ab8662c4 Author: Alan Garny '' Date: Thu Oct 17 17:30:06 2013 +0200 Slight update to our developer documentation '[ci' 'skip].' commit 9f7c6f27afda0d0401eddc1bf693053adeb3ce12 Author: Alan Garny '' Date: Thu Oct 17 17:16:06 2013 +0200 Now have an optimal Travis CI script. commit a25416c409fa34b59abb87dc417a85632807032f Author: Alan Garny '' Date: Thu Oct 17 17:14:43 2013 +0200 Slight update to our README.md file '[ci' 'skip].' commit 41824967c5e31cbbac8b3953a009ca43530a9537 Author: Alan Garny '' Date: Thu Oct 17 17:13:17 2013 +0200 Slight update to our README.md file '[ci' 'skip].' commit 0d6af6eb3a95417f3f614abbd00e523ce6f3432a Author: Alan Garny '' Date: Thu Oct 17 17:11:01 2013 +0200 Added a README.md file so that GitHub visitors can see the contents of our homepage '[ci' 'skip].' commit 3a39229c01018729218a42559f79b208b5727371 Author: Alan Garny '' Date: Thu Oct 17 17:07:28 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit d31be07cf0bb69cc2e8237e9a7b335e4c93905c7 Author: Alan Garny '' Date: Thu Oct 17 16:56:54 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit 16d0b1181e821f3c4b47ae643674254e9d6b493c Author: Alan Garny '' Date: Thu Oct 17 16:50:08 2013 +0200 Some tests to reduce the amount of work done by our Travis CI script. commit 38349b6e90b2c08890cfd32d08db4ec1c665e1bb Author: Alan Garny '' Date: Thu Oct 17 16:33:24 2013 +0200 Some tests to reduce our Travis CI script. commit bf3511d7263a6c95f291c9d278c2f602a42d2c89 Author: Alan Garny '' Date: Thu Oct 17 16:22:15 2013 +0200 Removed a test in our Compiler plugin '(use' of definite integrals are not tested in that plugin 'anymore).' commit 9edccf7cfe420e062cdd07760954a6527e64fc5b Author: Alan Garny '' Date: Thu Oct 17 16:10:00 2013 +0200 Some work on our Travis CI script. Everything now builds and runs fine on Travis CI, so try to see what we can get rid of in our .travis.yml script. commit fa01f6526a592303f68e7a2f9f33759465be2982 Author: Alan Garny '' Date: Thu Oct 17 16:01:59 2013 +0200 Some work on our Travis CI script. Now, the build time is optimal, so now try to get our tests to run properly. commit fdbd203de3d34f0328a865be1d284d0f7c546b39 Author: Alan Garny '' Date: Thu Oct 17 15:54:47 2013 +0200 Some work on our Travis CI script. Allow a build with n parallel jobs, with n the number processors on the Travis CI server. commit cbfe1685f23010746bae38bdce5613fdfab84980 Author: Alan Garny '' Date: Thu Oct 17 15:41:18 2013 +0200 Some work on our Travis CI script. Increased the number of jobs since the build now goes through with 4 parallel jobs. Also some minor cleaning up. commit caa81b9881af43421f67a2595bdef30137f07d62 Author: Alan Garny '' Date: Thu Oct 17 15:25:07 2013 +0200 Some work on our Travis CI script. Removed Clang as one of the compilers since our binaries for the CellML API and LLVM were built using gcc, which means that we cannot build OpenCOR with Clang on Ubuntu. Also limited the number of parallel jobs for the compilation. We used to have no limit and this would eventually crash the build. 'Oops!' commit 678a1ba74b48e33dad0f749c265325bde2d8c41a Author: Alan Garny '' Date: Thu Oct 17 15:13:40 2013 +0200 Some work on our Travis CI script. commit 69bc031aa978571ef2bad528bc0d8c5744bcd752 Author: Alan Garny '' Date: Thu Oct 17 15:06:58 2013 +0200 Some work on our Travis CI script. commit d97a3ad1f269d66a6eee72f1156261f9d66332b0 Author: Alan Garny '' Date: Thu Oct 17 14:19:35 2013 +0200 Some work on our Travis CI script. commit e65d383ad28e6161c5d98c9c9dfb538bb265b2d7 Author: Alan Garny '' Date: Thu Oct 17 14:12:59 2013 +0200 Some work on our Travis CI script. commit 1a78c75ea5dfbb54805c23b12035987c28f41424 Author: Alan Garny '' Date: Thu Oct 17 13:45:23 2013 +0200 Some work on our Travis CI script. The Travis CI server seems to be configured in such a way that we can install neither ia32-libs nor ia32-libs-multiarch '(to' be able to run 32-bit applications on a 64-bit 'system).' So, we are going back to building CMake ourselves... commit 48703554dd79ee223bf0e660ca4a6589bac82dab Author: Alan Garny '' Date: Thu Oct 17 13:41:05 2013 +0200 Some work on our Travis CI script. commit 432fbcab378fc381e6f76ce422a88e3966afaab3 Author: Alan Garny '' Date: Thu Oct 17 13:39:48 2013 +0200 Some work on our Travis CI script. commit 6c85798969c0c8d8af8215b0bc37cc87b44b1fe1 Author: Alan Garny '' Date: Thu Oct 17 13:24:55 2013 +0200 Some work on our Travis CI script. commit 359ca7573f2f6ab082c34cffbe24fa4a9bdea122 Author: Alan Garny '' Date: Thu Oct 17 13:17:47 2013 +0200 Some work on our Travis CI script. commit 42a459959f812ddb6243b7bd9588272f41d80b2e Author: Alan Garny '' Date: Thu Oct 17 13:06:13 2013 +0200 Some work on our Travis CI script. commit 11fcc938deb7044559f8c45c7ba720ca0b598466 Author: Alan Garny '' Date: Thu Oct 17 13:04:58 2013 +0200 Some work on our Travis CI script. We 'don'\''t' build CMake ourselves '(it' takes too long and generates too many log 'entries).' Instead, we get the 32-bit binaries and install ia32-libs so that we can run the 32-bit version of CMake on the Travis 'CI'\''s' 64-bit server. Also added qt51svg to our list of Qt dependencies. commit 81c37012429d240217b156022e41ddab8ed988d9 Author: Alan Garny '' Date: Thu Oct 17 12:49:27 2013 +0200 Some work on our Travis CI script. commit c38ab65133f67336bedf27cdf22348e6886246e3 Author: Alan Garny '' Date: Thu Oct 17 12:46:33 2013 +0200 Some work on our Travis CI script. commit b7ce9b5490146652604da84ab13bc4b92e101410 Author: Alan Garny '' Date: Thu Oct 17 12:28:17 2013 +0200 Some work on our Travis CI script. commit cc99d58d7c89921a9f18c787a06d9a29d18e6039 Author: Alan Garny '' Date: Thu Oct 17 12:16:33 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. We were trying to use a 32-bit version of CMake while the build machines at Travis CI run the 64-bit version of Ubuntu 12.04 LTS. So, now, we build and install our own version of $'CMake\342\200\246' commit 7a7327d71e85bf013946db2e06e068a2f9a97053 Author: Alan Garny '' Date: Thu Oct 17 11:56:31 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit 2adedd6f1002012b6cf03e71901b34aedb6ed98d Author: Alan Garny '' Date: Thu Oct 17 11:38:57 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit c3469d1b67557b7243f5241c66583fb299fc43a4 Author: Alan Garny '' Date: Thu Oct 17 11:35:13 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit fb59818f0d18065fb499e2f78894a4dcab465a7c Author: Alan Garny '' Date: Thu Oct 17 11:32:46 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit f1fbec292c054388e28d3c08f0dd120f8fdc0f1f Author: Alan Garny '' Date: Thu Oct 17 10:27:22 2013 +0200 Trying to understand why Travis CI cannot find /usr/bin/cmake. commit 172150fb0d072328abb02b2fce9c292da257bc2e Author: Alan Garny '' Date: Thu Oct 17 10:22:10 2013 +0200 Some improvements to our .travis.yml file though it should still fail due to Qt5 not being fully setup. commit f3b9a4aaf791e277d1594c89236351b08118c997 Author: Alan Garny '' Date: Thu Oct 17 02:26:02 2013 +0200 Minor updates to the developer documentation '[ci' 'skip].' commit bb21c4862af27786d4ecc51a921ff830b893cad5 Author: Alan Garny '' Date: Thu Oct 17 02:20:38 2013 +0200 Minor updates to the developer documentation '[ci' 'skip].' commit 112c7621fc37c80539b9e3bba39cfada74d231a8 Author: Alan Garny '' Date: Thu Oct 17 02:18:25 2013 +0200 Minor updates to the developer documentation '[ci' 'skip].' commit 8dfac7c2b0d05b5d2450d6008d998e1ddb93591d Author: Alan Garny '' Date: Wed Oct 16 20:51:46 2013 +0200 Some minor cleaning up '[ci' 'skip].' commit 34506e942b0f1a5bd7017d77d8d734ae8c8fea86 Author: Alan Garny '' Date: Wed Oct 16 20:15:44 2013 +0200 Ask for CMake 2.8.12 to be used with Travis CI. commit 86c08d4e0ebc2748dc6fe11aa1f17e16e6e757c8 Author: Alan Garny '' Date: Wed Oct 16 20:01:24 2013 +0200 Added our initial .travis.yml file. commit 0b3be6058a94b20d2f27f70234b3bfb896fcac1d Author: Alan Garny '' Date: Wed Oct 16 17:52:45 2013 +0200 Some minor cleaning up. commit 9212b8e542c50c44a937213f37c9a0aa1be51fdf Author: Alan Garny '' Date: Wed Oct 16 17:48:04 2013 +0200 Some minor refactoring. Basically removed our Interface class. commit 855410682de4ab83a490426c4b322f213ff8d11a Author: Alan Garny '' Date: Wed Oct 16 16:01:09 2013 +0200 SingleCellView plugin: handle the case when a file is being closed. commit 84083f9487a932f6e100d0ba7ad3b0f7ff8576fc Author: Alan Garny '' Date: Wed Oct 16 15:21:47 2013 +0200 Some minor cleaning up. commit 6c906fb1a66093d188313acae1225338da1072de Author: Alan Garny '' Date: Wed Oct 16 14:48:26 2013 +0200 Some minor cleaning up. commit 414fec7382b84ddd6f263c7d3caa5ab553935f1c Author: Alan Garny '' Date: Wed Oct 16 14:42:11 2013 +0200 Addressed an issue with 'PMR2'\''s' certificate having expired. We should obviously get the PMR2 guys to update their certificate, but still we 'don'\''t' want our users to ''\''suffer'\''' from it in the future, $'so\342\200\246' commit a829eb31cb9270e6e2ffe79899437ff952778e81 Author: Alan Garny '' Date: Wed Oct 16 14:05:09 2013 +0200 Some minor cleaning up. commit 71cdd324690a3c035426a502afaec32e04958cfc Author: Alan Garny '' Date: Wed Oct 16 12:38:43 2013 +0200 Minor update to the developer documentation. commit 15ba84dce9ea78fea06f9d0d532b6dcf3e619cbd Author: Alan Garny '' Date: Wed Oct 16 10:43:51 2013 +0200 Some minor cleaning up. xcodebuild used to always generate an error message, even though everything was fine. However, now, there is no such message anymore '(!?),' $'so\342\200\246' commit 4c9b029394a20272a92e49a446f34070a3e5598b Author: Alan Garny '' Date: Tue Oct 15 17:51:22 2013 +0200 Some minor cleaning up. commit dce3d0fba25de9fbf0fc0bfd07ce182377bc8c6a Author: Alan Garny '' Date: Tue Oct 15 17:22:19 2013 +0200 Re-enabled some plugins now that we have created a branch for v0.2. commit cb3e70c24c8836414559ad85e57b0aa579decf81 Author: Alan Garny '' Date: Tue Oct 15 15:48:50 2013 +0200 New snapshots. commit cc63af66a5ec0687aa9145f993b7e385fe8f98e9 Author: Alan Garny '' Date: Tue Oct 15 15:40:59 2013 +0200 Fixed a typo. commit 92076f464e9ee302a6d103c771b08cd6400e3ec0 Author: Alan Garny '' Date: Tue Oct 15 15:31:49 2013 +0200 Fixed an issue with the plotting of some imported variables '(closes' '#231).' The fix has resulted in us displaying model parameters by respecting the encapsulation information. In the end, 'it'\''s' better that way, so 'it'\''s' all 'good!' commit 563f6dc77631404d4ec9cf82d160250927009d11 Author: Alan Garny '' Date: Mon Oct 14 14:16:16 2013 +0200 New snapshots. commit 81136cd717832aeaaa7e7f65bf943261fa055389 Author: Alan Garny '' Date: Mon Oct 14 14:05:32 2013 +0200 Some work on our graph panel plot widget. commit 324d8c9ce1159e3d348285cbde8fa5bef7fa118e Author: Alan Garny '' Date: Mon Oct 14 14:00:24 2013 +0200 Some minor cleaning up. commit f92448ba5d4ec0b37b3ce4db03fd75a45e635aca Author: Alan Garny '' Date: Mon Oct 14 13:58:51 2013 +0200 Some minor cleaning up. commit 042ef8f7c88d5110c2a5fb504808a90269906e82 Author: Alan Garny '' Date: Mon Oct 14 13:30:15 2013 +0200 Some work on our graph panel plot widget. commit 080f8188b9d7d382faeab039a1eb5c92647794fc Author: Alan Garny '' Date: Mon Oct 14 12:42:42 2013 +0200 Some work on our graph panel plot widget. commit 540ed0c543aac82e9c7b6a3221d17d7da80a8b38 Author: Alan Garny '' Date: Mon Oct 14 12:08:12 2013 +0200 Some work on our graph panel plot widget. commit d6457ec0fdd90453aadeb26e3311c966e024f80b Author: Alan Garny '' Date: Mon Oct 14 11:16:51 2013 +0200 Some work on our graph panel plot widget. commit 28984e4c532859606f0ae2eee911cb30cb6a6280 Author: Alan Garny '' Date: Sun Oct 13 09:47:35 2013 +0200 Slight updates to the user documentation. commit 8b3444ce9b73b730794ad40f807f828d968a0f5a Author: Alan Garny '' Date: Sat Oct 12 09:55:28 2013 +0200 Slight update to the user documentation. commit 690d8f75c4a512d2e56fa4ec21159896fd833559 Author: Alan Garny '' Date: Fri Oct 11 13:05:02 2013 +0200 Some minor cleaning up. commit dc7d7bee589e0d3f2ba8be4a50c149af30829d80 Author: Alan Garny '' Date: Fri Oct 11 09:14:13 2013 +0200 Some minor updates to the documentation. commit 525769805b2aeb7043b17726bcd6620bd7719d74 Author: Alan Garny '' Date: Thu Oct 10 18:16:39 2013 +0200 Very slight speedup in the plotting of data during a simulation. commit e727f37482c4ab920a7bd3136e5c06e07614f7b0 Author: Alan Garny '' Date: Thu Oct 10 16:59:20 2013 +0200 Fixed an issue with quitting OpenCOR while a simulation is still running. This 'didn'\''t' use to cause problems, but I guess we had just been lucky until now, i.e. that nothing was taking long enough for 'SingleCellViewWidget::checkResults()' to fail. commit 800a4d32ad42c59de0d9e92cfb8394eb23f5eaec Author: Alan Garny '' Date: Thu Oct 10 16:42:10 2013 +0200 Some minor cleaning up. commit f84d4504817e08a55c5ad48d74ac2c0a050b0801 Author: Alan Garny '' Date: Thu Oct 10 16:39:36 2013 +0200 Some work on our graph panel plot widget. commit 3150c63d7e26456a1e022f712fbe2cb6fe2c65af Author: Alan Garny '' Date: Thu Oct 10 16:10:37 2013 +0200 Some minor cleaning up. commit 0562f83ad77d47bac628fc7d6abe1ee4684195a5 Author: Alan Garny '' Date: Thu Oct 10 15:50:12 2013 +0200 Some work on our graph panel plot widget. commit 23d4b696d347f64a89b22b5db06a9ec4e2a9130a Author: Alan Garny '' Date: Thu Oct 10 15:44:21 2013 +0200 Keep track of which graphs are selected when switching from one file to another in the simulation view plugin. commit 0d522596348bdb1405ec9feb0a1137a7e87fcac8 Author: Alan Garny '' Date: Thu Oct 10 15:38:56 2013 +0200 Keep track of which graphs are selected when switching from one file to another in the simulation view plugin. Also some minor cleaning up. commit 37336d03c9a501575622ebccf09e948c915718e4 Author: Alan Garny '' Date: Thu Oct 10 15:04:19 2013 +0200 Some work on our graph panel plot widget. commit 80fdf0a5c6b3cd4260ba8fb2edeede54336f0104 Author: Alan Garny '' Date: Thu Oct 10 14:08:54 2013 +0200 Some minor cleaning up and refactoring. commit 4718523e47a77a37966e782b2c52b8440049d528 Author: Alan Garny '' Date: Thu Oct 10 13:34:09 2013 +0200 Some work on our graph panel plot widget. Also some minor cleaning up. commit 10886d1903012607abfe4f8d1252844399263385 Author: Alan Garny '' Date: Thu Oct 10 13:22:40 2013 +0200 Some minor cleaning up. commit 582e21e3975a212487c85b96b1217352e7e14e92 Author: Alan Garny '' Date: Thu Oct 10 13:12:47 2013 +0200 Some minor cleaning up and refactoring. commit 1bb71154e7cb3c2d61629d8396ceb4ef988a3d0a Author: Alan Garny '' Date: Thu Oct 10 12:13:24 2013 +0200 Some minor cleaning up. commit 144c9f32dba60b9334c878af73c112d7e619417c Author: Alan Garny '' Date: Thu Oct 10 11:39:40 2013 +0200 Improved the resetting of the zoom level in our graph panel plot widget. commit 7201883c6e15a01cad647197a2a80df24207624b Author: Alan Garny '' Date: Thu Oct 10 11:14:18 2013 +0200 Keep track of the active graph panel when switching files in the simulation view plugin. commit b0f41fac61645fa5451052b0df94aa83650a95ac Author: Alan Garny '' Date: Thu Oct 10 10:53:07 2013 +0200 Some minor cleaning up. commit 65e33e56c2733b6a4f3b8835cef8ec7f7e555757 Author: Alan Garny '' Date: Wed Oct 9 19:24:32 2013 +0200 Some work on our graph panel plot widget. commit 6edf8f044f108a072582b42b223a4999c591a2e0 Author: Alan Garny '' Date: Wed Oct 9 18:02:52 2013 +0200 Some work on our graph panel plot widget. commit 6c93e820adb2538ec1c384c7fb54f9c1921272f0 Author: Alan Garny '' Date: Wed Oct 9 17:15:47 2013 +0200 Some work on our graph panel plot widget. commit 0efa99329858ebcf261b404175158f53fe480644 Author: Alan Garny '' Date: Wed Oct 9 16:52:38 2013 +0200 Some work on our graph panel plot widget. commit 2f0863d9f2a230c49fc5c41d2ea8f85fa2b1366f Author: Alan Garny '' Date: Wed Oct 9 16:04:05 2013 +0200 Some work on our graph panel plot widget. commit 9d3a2e1eca69b4918b0615a8ea191873e8f60d9f Author: Alan Garny '' Date: Wed Oct 9 15:20:24 2013 +0200 Some work on our graph panel plot widget. commit 64bfcb35783dbcaa62dd3ec073aea37297f38afc Author: Alan Garny '' Date: Wed Oct 9 14:52:32 2013 +0200 Some minor cleaning up. commit ca0b0c65bbbcbf7fd56cac1c44ce4b84ff4fa8d5 Author: Alan Garny '' Date: Wed Oct 9 14:44:23 2013 +0200 Some minor refactoring. commit 587b32858d943aa618cc1d0f6d439d846ce75eae Author: Alan Garny '' Date: Wed Oct 9 14:01:43 2013 +0200 Some work on our graph panel plot widget. commit 0423ac798ffca3620e56ca771dd8d142b9e3d7f7 Author: Alan Garny '' Date: Wed Oct 9 13:37:53 2013 +0200 Some work on our graph panel plot widget. commit f328dd9ff8b2137951cf06e777bfca754838bc5e Author: Alan Garny '' Date: Wed Oct 9 12:39:59 2013 +0200 Some work on our graph panel plot widget. '(92ec1d6)' commit 92ec1d6b9c18f8307dfe28ebb7bf2318a8a15513 Author: Alan Garny '' Date: Wed Oct 9 12:10:32 2013 +0200 Some work on our graph panel plot widget. commit 5edd833e1d6b79d75a9b2235df5c5f46de45e049 Author: Alan Garny '' Date: Wed Oct 9 12:00:14 2013 +0200 Can now reset the zoom level in a graph panel plot widget. commit a552f0fc4da943122fb3f2e272a10a4f1f77956e Author: Alan Garny '' Date: Wed Oct 9 11:15:05 2013 +0200 Some minor cleaning up. commit 16ab9802300034f482b7f6852bc3b520d71fb4de Author: Alan Garny '' Date: Wed Oct 9 11:04:52 2013 +0200 Some minor refactoring. commit e2f7a82288cc55528b903d041b71a9a5ffc0401c Author: Alan Garny '' Date: Wed Oct 9 10:50:04 2013 +0200 Some minor cleaning up. commit fff37fbc91ca716fab76c16ff427fce0b8ac0603 Author: Alan Garny '' Date: Wed Oct 9 10:45:10 2013 +0200 Some work on our graph panel plot widget. commit 98d04b098dc21eead7a6637089e10540056e8b6d Author: Alan Garny '' Date: Tue Oct 8 18:48:15 2013 +0200 Minor comment. commit ea904de19b9d775b30631d4fe9b200db3ff101c8 Author: Alan Garny '' Date: Tue Oct 8 18:09:21 2013 +0200 Fixed a minor issue with zooming a region. commit f37be6f031eb82923e2929b09da356bbf9495127 Author: Alan Garny '' Date: Tue Oct 8 17:45:05 2013 +0200 Some minor refactoring. commit 448d92c5cb25c4c4e9c8796c7c8d244b92cb5ca2 Author: Alan Garny '' Date: Tue Oct 8 16:21:07 2013 +0200 Some minor cleaning up. commit c894c088691003ed6996ec078531f5e45de36b5a Author: Alan Garny '' Date: Tue Oct 8 15:55:58 2013 +0200 Some work on zomming in/out around the mouse position in our graph panel plot widget '(#241).' commit 4515c2dcf795946957d84f5ca262f48c03fc18d7 Author: Alan Garny '' Date: Tue Oct 8 13:49:22 2013 +0200 Some minor cleaning up. commit 888ef723d78871a7603142cb5ac62a32062e403b Author: Alan Garny '' Date: Tue Oct 8 13:42:20 2013 +0200 Some minor cleaning up. commit d2c02374fd53b0704d33b6486c2dfc02198832b2 Author: Alan Garny '' Date: Tue Oct 8 13:27:35 2013 +0200 Some work on our graph panel plot widget. commit 6b3df49235b8bd367432714f0870581462e7915f Author: Alan Garny '' Date: Tue Oct 8 10:12:57 2013 +0200 Some work on our graph panel plot widget. commit 99ede9263add8e72d0eadbc13896643c486c7632 Author: Alan Garny '' Date: Tue Oct 8 09:20:55 2013 +0200 Some minor cleaning up. commit a477821401619716364873b34706ed7a4c9af0c0 Author: Alan Garny '' Date: Mon Oct 7 18:47:44 2013 +0200 Fixed a previous commit. commit 5e1e904f87a00109d363bdb4351564e551ec94d1 Author: Alan Garny '' Date: Mon Oct 7 18:26:06 2013 +0200 Some minor cleaning up. commit b481f20378bb8a61b71d7e6db41a43360dd9c61e Author: Alan Garny '' Date: Mon Oct 7 18:12:45 2013 +0200 Some cleaning up and refactoring. commit 71bd691b8dceadf06345a3808780eebcc5a5f7eb Author: Alan Garny '' Date: Mon Oct 7 15:45:48 2013 +0200 Some minor cleaning up and refactoring. commit d1477da29518cb645951a4397cd2f650d4c0d0af Author: Alan Garny '' Date: Sun Oct 6 15:21:50 2013 +0200 Minor fix to our graph panel plot widget. commit 66f56d256063a2ce778e22013f8fb68749cc1d2d Author: Alan Garny '' Date: Sun Oct 6 12:43:35 2013 +0200 Improved the accuracy of our graph panel when showing coordinates and zooming a region. Indeed, before, there could be cases where moving the mouse by one pixel 'wouldn'\''t' move the crossing lines for showing the coordinates '(however,' the label for the coordinates would still get updated, as 'expected).' This was due to rounding issues following some mapping/unmapping. Otherwise, also addressed a small issue related to the fact that we now use QRect rather than QRectF in some cases, and that for historical reasons some of its methods '(e.g.' 'bottom(),' 'right()' and 'bottomRight())' 'don'\''t' behave the same way as its QRectF counterparts. commit 3e9205182817e25ef9aab9a533658ecd7500c6d7 Author: Alan Garny '' Date: Sat Oct 5 18:45:10 2013 +0200 Disabled some plugins for version 0.2 of OpenCOR. commit ed67acd560129f250194bd9ea73bfeaef0921301 Author: Alan Garny '' Date: Sat Oct 5 18:22:15 2013 +0200 Some minor improvements to the displaying of coordinates in our graph panel. commit 47d7dafb7695ab15bef0cae0245aafad1cc30bfa Author: Alan Garny '' Date: Sat Oct 5 17:36:45 2013 +0200 Fixed a typo. commit 486a05050b5a9c57381086cc29551e18edeaa5c9 Author: Alan Garny '' Date: Sat Oct 5 15:27:09 2013 +0200 Finally managed to fix an issue with the displaying of coordinates in our graph panel. commit cb2c993fb5870390082092f530442d2ece94b106 Author: Alan Garny '' Date: Sat Oct 5 10:06:02 2013 +0200 Some minor cleaning up. commit 0e254ab1d47dbea34ca2e68f094cecb3d83fa959 Author: Alan Garny '' Date: Fri Oct 4 16:35:08 2013 +0200 Some minor cleaning up. '(4b4b259)' commit 4b4b2598f87b0c29857987fac2a1e361d63b5f85 Author: Alan Garny '' Date: Fri Oct 4 16:17:18 2013 +0200 Some minor cleaning up. commit 9b59930b4dc2f82814f3e219866408fdc0e7be18 Author: Alan Garny '' Date: Fri Oct 4 16:07:50 2013 +0200 Some minor cleaning up. commit da39c7e1184e42cafd5f73e7bc0f75e04d20dea0 Author: Alan Garny '' Date: Fri Oct 4 13:27:01 2013 +0200 Some minor cleaning up. commit fb8bfd34e8ba7b5e89add00580dd33f33d751333 Author: Alan Garny '' Date: Fri Oct 4 11:14:47 2013 +0200 Some work towards zooming out more '(#240).' commit 870b3311a1081fc5fb06ee379b648d6ff866b016 Author: Alan Garny '' Date: Fri Oct 4 11:02:45 2013 +0200 Some work towards zooming out more '(#240).' commit 5ccd7a2109cdd766b929b870012e35c005e6ed1d Author: Alan Garny '' Date: Thu Oct 3 18:55:12 2013 +0200 Some minor cleaning up. commit 8b59570fc7862d32e593752bc05568b14e97e542 Author: Alan Garny '' Date: Thu Oct 3 18:17:06 2013 +0200 Minor improvement to the formatting of coordinates in our graph panel. commit 2fabe789bacde23830661aa3c879ed03ac946fc1 Author: Alan Garny '' Date: Thu Oct 3 17:19:09 2013 +0200 Some work towards zooming out more '(#240).' commit 7447738025cc3c932f06ded45bae9cab2c0523fc Author: Alan Garny '' Date: Thu Oct 3 15:39:48 2013 +0200 Some minor cleaning up. commit b62bd3f68d8741b51b50bd74e649666986ed1797 Author: Alan Garny '' Date: Thu Oct 3 15:26:30 2013 +0200 Fixed a small problem with our graph panel. commit 5a491048bf714b414e0c3cd8b1d616add9f059cd Author: Alan Garny '' Date: Thu Oct 3 12:15:00 2013 +0200 Improved the zooming in of data by making 'axes'\''' labels more accurate. commit 8a8d11cbc94789828ebafb6a142d6d26693ea3c5 Author: Alan Garny '' Date: Thu Oct 3 09:07:04 2013 +0200 Minor update to QtSingleApplication. commit 2ad6bde8533be25fe486b6fce79ed0a197b7a4f2 Author: Alan Garny '' Date: Wed Oct 2 18:40:37 2013 +0200 Fixes an issue with unique constant graphs '(closes' '#243).' commit 5cb746e36a7f580f647b0b2b1bf16b74a428fd0f Author: Alan Garny '' Date: Wed Oct 2 17:59:08 2013 +0200 Improved the speed of switching files when having many selected graphs with many data points. commit 70313e8f86a56a2fec8fb57b76843483f2902877 Author: Alan Garny '' Date: Wed Oct 2 17:50:06 2013 +0200 Minor fix. commit bb0b55455bfdb85cef88d2fa357f944ec77a7404 Author: Alan Garny '' Date: Wed Oct 2 13:32:05 2013 +0200 Various improvements to the '(un)selection/removal' of graphs in our SingleCellView plugin. commit 88ec644ee3881824917b5b8531b67012c1c3c194 Author: Alan Garny '' Date: Wed Oct 2 09:47:32 2013 +0200 Minor update to our developer documentation. commit 139a18309662c01c7ccb354215004e8af139ea91 Author: Alan Garny '' Date: Tue Oct 1 16:56:06 2013 +0200 Some minor cleaning up. commit f68f45b70b1d227d06fc17127d61288cc74a60fe Author: Alan Garny '' Date: Tue Oct 1 16:35:53 2013 +0200 Some minor cleaning up. commit 3d5d4a18770f66dc1e184c8fd912f97569f0ae63 Author: Alan Garny '' Date: Tue Oct 1 16:20:11 2013 +0200 Made double clicking on a graph 'panel'\''s' plot reset the zoom level rather than copy its contents to the clipboard '(which' can still be done through the context 'menu).' commit 14eb38f78588f249db44b9cc2fea0555269003e0 Author: Alan Garny '' Date: Tue Oct 1 15:57:44 2013 +0200 Optimised our graph 'panel'\''s' 'plot'\''s' axes. commit 7c41d025ee02d2872cd9b7c34e4894491d375f49 Author: Alan Garny '' Date: Tue Oct 1 15:29:56 2013 +0200 Optimised our graph 'panel'\''s' 'plot'\''s' axes. commit be1a47214bd48b5c3d33575b2d8acd7047fbfe2a Author: Alan Garny '' Date: Mon Sep 30 10:55:16 2013 +0200 Some minor cleaning up. commit f2f31a64dcab404a3defd2886527d5163087b2a3 Author: Alan Garny '' Date: Mon Sep 30 10:52:45 2013 +0200 Some work on our graph panel plot widget. commit 1fc9dcd6bce88abec79d4d8e73f293a2447279fb Author: Alan Garny '' Date: Sun Sep 29 17:54:39 2013 +0200 New snapshots. commit acb2fa517bec95ceed55c4e331a0828de5fe19c6 Author: Alan Garny '' Date: Sun Sep 29 16:44:38 2013 +0200 'Don'\''t' make 'rows'\''' height uniform in TreeViewWidget. Indeed, this was causing problems with PropertyEditorWidget on Windows XP '(both' the top and the bottom of the icon of model parameters in the SingleCellView plugin were chopped 'off).' commit a3f9448df94b54d4e4e17bbcaebfc6c145d43ef3 Author: Alan Garny '' Date: Sun Sep 29 14:56:54 2013 +0200 Some minor cleaning up. commit 86bd7d277d6948679c0db81795e827454573fabe Author: Alan Garny '' Date: Sun Sep 29 14:35:25 2013 +0200 Some minor cleaning up. commit 4a923235dc7e51e10a502a3f2f320c28f966a32d Author: Alan Garny '' Date: Sun Sep 29 14:04:56 2013 +0200 Some minor cleaning up. commit 6d35011ef7dfd1d8f71d107174ff9c30d8e854db Author: Alan Garny '' Date: Sun Sep 29 13:28:18 2013 +0200 Some minor cleaning up. commit 5edbd2b9bedd1d5a704eafc6e86eadab36593519 Author: Alan Garny '' Date: Sun Sep 29 02:24:04 2013 +0200 Worked around a very puzzling issue with Qt 5.1.1 '(?)' '(closes' '#229).' commit 11f0ac53ec749b29a34fed91dc6a79561726e98d Author: Alan Garny '' Date: Sun Sep 29 01:53:39 2013 +0200 Some minor cleaning up. commit 55751742e4c9d1d3d712307ef65ff4f7fdecccd0 Author: Alan Garny '' Date: Sat Sep 28 16:42:02 2013 +0200 Some minor cleaning up. commit b7a7f4217ff6c50865eb1b8bad77d55fc1f2d3be Author: Alan Garny '' Date: Sat Sep 28 16:21:37 2013 +0200 Some minor cleaning up. commit d39a28848742b2da35e666e12b58f61c9c811cbe Author: Alan Garny '' Date: Sat Sep 28 15:19:09 2013 +0200 Some minor cleaning up. commit 0c47eeb4d0c12a0362bb28c56fb175eeacf6f599 Author: Alan Garny '' Date: Sat Sep 28 10:14:35 2013 +0200 Some minor cleaning up. commit c882e423be737fe82ec24bb26201b7f8e4c59b6c Author: Alan Garny '' Date: Sat Sep 28 09:56:23 2013 +0200 Some minor cleaning up. commit cffa6681ed414ad506fcd5102df7b3a76e932761 Author: Alan Garny '' Date: Sat Sep 28 09:48:39 2013 +0200 Slight modifications to our make.bat and maketests.bat files to make them generate NMake Makefiles '(as' opposed to JOM 'ones).' Indeed, ideally, we would generate JOM Makefiles, but even though Qt Creator uses JOM to effectively build OpenCOR, it still generates NMake Makefiles '(after' all, NMake and JOM Makefiles are the 'same).' So, now we can build OpenCOR from the command line and then switch to Qt Creator without first having to make clean everything. commit 345cdc9f5142cf67a65ab08d525c7fe2b16a14f5 Author: Alan Garny '' Date: Sat Sep 28 09:34:30 2013 +0200 Some minor cleaning up. commit 009f93646f2d896e229033ebdcd719d6c785dcf8 Author: Alan Garny '' Date: Sat Sep 28 09:26:58 2013 +0200 Some minor cleaning up. commit 4dabf32fb3bce7b94f2d20a070b3013a1042b47f Author: Alan Garny '' Date: Fri Sep 27 15:58:43 2013 +0200 Slight improvements to the way we build OpenCOR on OS X. commit 6ee118c5a72655a347175036347ecae56865dd21 Author: Alan Garny '' Date: Fri Sep 27 15:47:14 2013 +0200 Some minor cleaning up of our compiler engine code. commit a6e40daf6548475190c5864a97d4559e1ddff934 Author: Alan Garny '' Date: Fri Sep 27 15:41:44 2013 +0200 Some minor cleaning up of our compiler engine code. commit 8c8b6defc36026fbe9d462452e098a745dec06c3 Author: Alan Garny '' Date: Fri Sep 27 15:18:02 2013 +0200 Some minor cleaning up of our compiler engine code. commit b56c2dbcc7b4809646720c205f00d2c02c1517fe Author: Alan Garny '' Date: Fri Sep 27 11:35:38 2013 +0200 Some minor cleaning up. commit 3076b8bf55371597a9fd069c3fd898797b9c1b86 Author: Alan Garny '' Date: Fri Sep 27 09:33:50 2013 +0200 Some minor rearrangement of code. commit 39fbc047ac96289f813b5276b115209d101c6ac7 Author: Alan Garny '' Date: Fri Sep 27 09:32:57 2013 +0200 Some minor typos. commit a44767d1c802dd6f2ea92813de30abc591d0f210 Author: Alan Garny '' Date: Thu Sep 26 20:20:49 2013 +0200 Updated our LLVM binaries on Windows, now that we need access to the llvm::Function class. commit 5293ef73ebab14129e1af4ebdd46b706983406e1 Author: Alan Garny '' Date: Thu Sep 26 18:56:58 2013 +0200 Make sure that we are able to retrieve the compiled ODE/DAE functions of a CellML file. commit dff41e8853aa289334108275b7a6bf212b474767 Author: Alan Garny '' Date: Thu Sep 26 17:20:58 2013 +0200 Updated the user documentation. commit 7c41bd0426e427717416d743f02d0c93d3e9e775 Merge: 788705ab2 868e3a804 Author: Alan Garny '' Date: Thu Sep 26 15:01:09 2013 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 788705ab24c99c9b18f01443dd8ce88207616490 Author: Alan Garny '' Date: Thu Sep 26 15:00:20 2013 +0200 New snapshots. commit 868e3a804e1f308d983be519de45524364690f8f Author: Alan Garny '' Date: Thu Sep 26 14:44:05 2013 +0200 Fixed an issue with states being recomputed when they 'shouldn'\''t' have '(closes' '#234).' commit 09a13f7cf47878e4ca5d3e51d570ad2fd6b6e3d3 Author: Alan Garny '' Date: Thu Sep 26 14:39:43 2013 +0200 Some minor cleaning up. commit 679669e70649494b5476f487a508b11aafe555dc Author: Alan Garny '' Date: Thu Sep 26 13:53:53 2013 +0200 Added a copy action to our graph 'panel'\''s' context menu. Also fixed a minor issue with handling a double click in a graph panel. commit 54e083cd3dcbafb77c5bc983e12123d6f23b6164 Author: Alan Garny '' Date: Thu Sep 26 13:53:01 2013 +0200 Some minor cleaning up. commit 7c6e59a717ac505eef4e45a3fd0dcd5e0edea49b Author: Alan Garny '' Date: Thu Sep 26 13:23:32 2013 +0200 '(Greatly)' improved the showing of coordinates and zooming of a region in our graph panel '(closes' '#237' as a 'result).' commit 3a92130438063ec16f9eed391fff50a982553118 Author: Alan Garny '' Date: Wed Sep 25 17:38:33 2013 +0200 Fixed a silly boolean test '(#238).' commit a6226549c824a2c061901fa6025dd863cd42cd4c Author: Alan Garny '' Date: Wed Sep 25 16:57:10 2013 +0200 Some work on addressing HiDPI-related issue in our graph panel '(#237).' commit 14c2a13357324d1f9c21b021719a420ab9c5f951 Author: Alan Garny '' Date: Wed Sep 25 15:39:31 2013 +0200 Some work on addressing HiDPI-related issue in our graph panel '(#237).' commit b352bb29d576ea7f2265c9871df302f712b1c061 Author: Alan Garny '' Date: Tue Sep 24 18:58:08 2013 +0200 Some minor cleaning up. commit 3df64ed36b76cfc8cffcabe83fffb6bc15acec4f Author: Alan Garny '' Date: Tue Sep 24 17:53:27 2013 +0200 New snapshots. commit 1825cb81e6e094d1de3a43dd2f9046374a27bde5 Author: Alan Garny '' Date: Tue Sep 24 17:51:47 2013 +0200 Fixed a silly issue with panning and zooming in/out that got introduced while recently refactoring some code. commit 1653c751d3f7cefe7ae18446c75347eb60db8967 Author: Alan Garny '' Date: Tue Sep 24 17:24:13 2013 +0200 Some minor improvements to our graph 'panel'\''s' plot widget. commit 89514b9ba25a138c67dd93339fd6b521c73e96f0 Author: Alan Garny '' Date: Tue Sep 24 16:55:18 2013 +0200 Some minor improvements to our graph 'panel'\''s' plot widget. commit 2aa73d821e8fc01e41648eaedb92d92554a5d6a4 Author: Alan Garny '' Date: Tue Sep 24 15:33:04 2013 +0200 Fxed a silly mistake with zooming a region in a graph panel. commit d570ea9b9f9e124dee2f0ec3513c86e576cccc2e Author: Alan Garny '' Date: Tue Sep 24 15:02:35 2013 +0200 Added a custom context menu to our graph panels to zoom in/out and reset the zoom level '(closes' '#238).' commit e471aeaab5c2400645a4baada7374484b1f2231f Author: Alan Garny '' Date: Tue Sep 24 15:00:28 2013 +0200 Addressed an issue with some plugins not being properly translated. commit 1118107eb9ce007a2b5f0a9b5dfc225feec93d30 Author: Alan Garny '' Date: Tue Sep 24 15:00:05 2013 +0200 Some minor cleaning up. commit d29b1abe849220db60d2c5323fb1b7f4fa3a1059 Author: Alan Garny '' Date: Tue Sep 24 11:32:09 2013 +0200 Some minor refactoring. Also fixed a small issue with the copy action in our CellMLModelRepository plugin. commit edfc14802f9720cebb98194bcd306641ff4affbc Author: Alan Garny '' Date: Mon Sep 23 17:44:26 2013 +0200 Some minor cleaning up. commit 53d33e19ea6795eac405eba03f2918f21e506243 Author: Alan Garny '' Date: Mon Sep 23 17:18:38 2013 +0200 New snapshots. commit f2762c704a8dcda92bb61fc78dc76e4fd84e5bb4 Author: Alan Garny '' Date: Mon Sep 23 16:59:36 2013 +0200 Some minor updates to our user documentation. commit 32af454f5c8ffa2423c76d677abe13464076a8fe Author: Alan Garny '' Date: Mon Sep 23 16:29:26 2013 +0200 Simulation plugin: fixed an issue that occurred when double clicking on a graph panel '(to' copy its contents to the 'clipboard).' commit e5097de0af31dcce725b3cc7389175aa4bf53601 Author: Alan Garny '' Date: Mon Sep 23 15:47:56 2013 +0200 Some minor refactoring and improvements to our plotting widget. commit 8f59def779659209b9adc9ffc9c0c52b9c738079 Author: Alan Garny '' Date: Mon Sep 23 11:32:14 2013 +0200 Make sure that the mouse wheel can only be used when not already carrying out another action '(closes' '#239).' commit 8e272b3d106691500e6a5a63b09bcc1ad0e5dccc Author: Alan Garny '' Date: Mon Sep 23 09:36:49 2013 +0200 Updated our copy of 'Qwt'\''s' MathML renderer from https://github.com/uwerat/qwt-mml-dev. commit b2abbd99f829118b938fd3eb92254e96639656d0 Author: Alan Garny '' Date: Fri Sep 20 19:17:39 2013 +0200 Removed some verifications in the Compiler plugin tests. Indeed, we were checking the error message, but this 'wouldn'\''t' work on a non-English system... commit b4a84fac6222178e5cc2cf7b0d3f747871912d22 Author: Alan Garny '' Date: Fri Sep 20 10:12:25 2013 +0200 Made sure that make.bat generates a release version of OpenCOR. commit a358b6c7142a7f9494cfe745c5cee9b546678f04 Author: Alan Garny '' Date: Fri Sep 20 09:58:11 2013 +0200 Made the zooming in/out less sensitive '(closes' '#235).' commit a920f81db3c41217cc04cbeeb5d386bc504d7b6f Author: Alan Garny '' Date: Thu Sep 19 14:50:07 2013 +0200 Now use jom '(i.e.' parallel 'compilation)' to build OpenCOR from the command line on Windows. commit 8c25b3396b05d374f0d25fffe21ea77a41a15efd Author: Alan Garny '' Date: Wed Sep 18 18:07:09 2013 +0200 New snapshots. commit ae9fe0b286cc7ee84e04ca7090fecbb39722b510 Author: Alan Garny '' Date: Wed Sep 18 17:35:19 2013 +0200 On OS X, build OpenCOR using the oldest SDK shipped with Xcode. commit ba7d6a53125c29948c3d94b294bd4e87353b29e2 Author: Alan Garny '' Date: Wed Sep 18 15:02:51 2013 +0200 Rebuilt LLVM using the oldest SDK '(10.7)' available with Xcode 4.6.3. commit d45821436d5a12af27e85f6b9dde5fba7666e8ac Author: Alan Garny '' Date: Wed Sep 18 11:27:35 2013 +0200 On OS X, build OpenCOR using the oldest SDK shipped with Xcode. commit d6a8504dca6f11e17ded3d2bfd40c8900b67f258 Author: Alan Garny '' Date: Wed Sep 18 11:20:30 2013 +0200 Some minor cleaning up. commit affba49643ea4b659c633e43d73e6023aa62df43 Author: Alan Garny '' Date: Tue Sep 17 19:01:40 2013 +0200 Some minor cleaning up. commit 0d6ae1d2d0a2cbb5207f0a005749f3d06f0938bc Author: Alan Garny '' Date: Tue Sep 17 17:43:15 2013 +0200 Some minor cleaning up. commit c095afd5d04b507ee98ab06fd8b4e2b15efa36d0 Author: Alan Garny '' Date: Tue Sep 17 16:31:25 2013 +0200 Minor reformatting of our README.txt file. commit 9133927edd21331ca974467cc91bc00b28bf01e0 Author: Alan Garny '' Date: Mon Sep 16 17:39:37 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 05b1aed736532b0737058148252c4678e4fa84c6 Author: Alan Garny '' Date: Mon Sep 16 15:12:05 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit bbe7b59ca5a05c4e24298468c26cb718612af7cb Author: Alan Garny '' Date: Sun Sep 15 17:28:19 2013 +0200 Minor update to the user documentation. commit ee8a2782701ddec853ae5bf509bd5e7333fa6b19 Author: Alan Garny '' Date: Sat Sep 14 17:40:27 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit e7014f4d0beef0c1d0a200986a4f5222b0650469 Author: Alan Garny '' Date: Fri Sep 13 10:57:57 2013 +0200 Slight update to the user documentation. commit b665cb77b297c07fbcb996ec10f4098996094df0 Author: Alan Garny '' Date: Fri Sep 13 10:52:36 2013 +0200 Added Noble 1962 as one of the model examples '(closes' '#232).' commit 947e51fb3287dc4c69416713f6f5c8fc65ff717d Author: Alan Garny '' Date: Thu Sep 12 18:44:06 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 467cb6e077d7ab154c96bdcdc4bedef573352a6f Author: Alan Garny '' Date: Thu Sep 12 16:12:41 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit c384a2270dd98ac920afb6c52f217d1cd80fbe29 Author: Alan Garny '' Date: Wed Sep 11 18:28:17 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit ba5a843b06f374b7ea18c5e1a8f1d1c0db37780e Author: Alan Garny '' Date: Wed Sep 11 11:57:04 2013 +0200 Minor update to the 'developer'\''s' documentation. commit 9df1932d3570e3c478c833ed9a9faf3479458975 Author: Alan Garny '' Date: Tue Sep 10 14:51:56 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 66154e50090f87042b248f9a3285fbcfcf8a36e9 Author: Alan Garny '' Date: Mon Sep 9 19:26:03 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 86310c3bd0f1e8d5f031b4dd75f3087fae9b974c Author: Alan Garny '' Date: Mon Sep 9 16:27:38 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 26b89b9ba77034a4c475c174350f93ad655bd2a8 Author: Alan Garny '' Date: Mon Sep 9 12:59:22 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 6246205f9b86fe1aecd0b03893c1d455686d5987 Author: Alan Garny '' Date: Mon Sep 9 09:07:45 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit eb7d5ae3a462398dbbaa6666c37c124b68aa56d1 Author: Alan Garny '' Date: Sun Sep 8 17:15:25 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit e26f9e4ef55ace69f9297653ea1e892b2c66dcfa Author: Alan Garny '' Date: Fri Sep 6 17:50:00 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit bc7df9e5e12546a751a25899348726e60cae8266 Author: Alan Garny '' Date: Fri Sep 6 16:55:43 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 0c8c22a3282ba6f47b5d377142edb64b7c2f7dd0 Author: Alan Garny '' Date: Thu Sep 5 19:32:33 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 7a7003dff022ee09b8c5c502d1f14dfb748ed2d8 Author: Alan Garny '' Date: Thu Sep 5 17:41:11 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit ec840c49a2386f279679b4691b77645671118ed1 Author: Alan Garny '' Date: Thu Sep 5 14:11:14 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 7e48c9765e7cec07a58f36411afbd753890639a5 Author: Alan Garny '' Date: Wed Sep 4 18:51:13 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 49c89ef00f68ac74b3dcb5fe1c274288043670e3 Author: Alan Garny '' Date: Wed Sep 4 18:39:20 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 703de419c23948a15e8c7096a950aa6125e4bc69 Author: Alan Garny '' Date: Wed Sep 4 16:20:47 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit e93926647479a6e908c4200197b8691b6f6f4bd7 Author: Alan Garny '' Date: Wed Sep 4 13:03:30 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 33e0787d56181c6432d849b34dd5fe27b7ed2d36 Author: Alan Garny '' Date: Mon Sep 2 19:16:29 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 3c7211318b8e87e84a3858c32e38f3482fad7047 Author: Alan Garny '' Date: Mon Sep 2 16:54:10 2013 +0200 Improved the formatting of error messages. commit b2d411008bf8a7b5c520a1bfbeaca8b05ef8ae77 Author: Alan Garny '' Date: Sun Sep 1 21:05:48 2013 +0200 Some minor cleaning up. commit f63ac53a53ca3443469a3c372d6ae3c151f4ae86 Author: Alan Garny '' Date: Sun Sep 1 20:39:10 2013 +0200 Minor update to the developer documentation. commit 9c5168aec0100177989dca7906462e41099b3a16 Author: Alan Garny '' Date: Fri Aug 30 19:33:36 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 01ec347476b78d9634dfa848eaebc72a7a752a74 Author: Alan Garny '' Date: Fri Aug 30 18:17:43 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit c2128bf54cebea06da7eb61534fa1131afa7d616 Author: Alan Garny '' Date: Fri Aug 30 10:16:39 2013 +0200 Qt 5.1.1 fixes an issue that got introduced in Qt 5.1.0 '(closes' '#).' commit 01a2868580847e7248fd9e8c2fedb57c0f8b4ea9 Author: Alan Garny '' Date: Fri Aug 30 10:09:13 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit 26ea7993e89349dccfb7d7099b8f188f5f7c7777 Author: Alan Garny '' Date: Thu Aug 29 19:14:34 2013 +0200 Some work on 'Qwt'\''s' MathML renderer. commit afd2c8fe4fe4aef20dc36bfb831cea8e4cb2ad49 Author: Alan Garny '' Date: Thu Aug 29 13:53:31 2013 +0200 Use Qt with OpenGL on Windows '(#229).' Indeed, this is needed for Windows XP '(see' 'http://qt-project.org/wiki/Qt-5-on-Windows-ANGLE-and-OpenGL).' commit 0941dca1c54ca66a9c9263bbf2dc532d551a48b5 Author: Alan Garny '' Date: Wed Aug 28 16:38:06 2013 +0200 Some minor cleaning up. commit be62e40ddc2ccfe8f77803f048a0ede7b52b5a9b Author: Alan Garny '' Date: Wed Aug 28 14:32:58 2013 +0200 Updated the developer documentation as a result of Qt and Qt Creator having been updated '(Qt' 5.1 '->' 5.1.1 and Qt Creator 2.7.2 '->' '2.8.1).' commit aea22948b1ed6d8365b438c770a85601903792a8 Author: Alan Garny '' Date: Wed Aug 28 14:32:25 2013 +0200 Updated the developer documentation as a result of Qt and Qt Creator having been updated '(Qt' 5.1 '->' 5.1.1 and Qt Creator 2.7.2 '->' '2.8.1).' commit d18c9e7a58db8714534d2f67c3d567f4ee8fdada Author: Alan Garny '' Date: Wed Aug 28 13:49:15 2013 +0200 'Qwt'\''s' MathML renderer: replaced ''\''double'\''' with ''\''qreal'\''' which is more portable. commit f89f686b1bf47ae552078176667431df859769af Author: Alan Garny '' Date: Wed Aug 28 11:57:24 2013 +0200 Some minor cleaning up of our 'Qwt'\''s' MathML renderer code. commit f0979a284859e9e6f6c413dab09daebfb2908f82 Author: Alan Garny '' Date: Wed Aug 28 08:50:49 2013 +0200 Minor cleaning up. commit 0108f307bb69ca0905999a3a9917640714a25768 Author: Alan Garny '' Date: Tue Aug 27 23:01:05 2013 +0200 Minor update to our third-party libraries page. commit 78bcb685d7c809042ef75f890ee13fb3339af212 Author: Alan Garny '' Date: Tue Aug 27 19:54:51 2013 +0200 Released OpenCOR under Apache 2.0 '(closes' '#226).' commit 9955ef33726fa4d0d0f5197210d57398bce02a31 Author: Alan Garny '' Date: Tue Aug 27 17:00:00 2013 +0200 'Qwt'\''s' MathML renderer: now use a floating point based approach. commit 6a439edaea089a469ab529036b7dd2cd5c657af1 Author: Alan Garny '' Date: Tue Aug 27 16:49:56 2013 +0200 File access rights issue. commit 63522271fc563ca734ee8e9854e8a288b120c889 Author: Alan Garny '' Date: Mon Aug 26 16:15:30 2013 +0200 'Qwt'\''s' MathML renderer: kind of starting over by reverting to the QtMmlWidget version that works with Qwt, and which contains the various cleaning ups. Indeed, the idea is to make the renderer use a floating point based approach rather than an integer one. By doing this, maybe some of the issues we found will $'disappear\342\200\246' commit 7de5a9a8c79fc26e0a07b8ad143a0f5000f3ff40 Author: Alan Garny '' Date: Fri Aug 23 15:46:55 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the line for mfrac being too thin '(#225).' commit 959f283bdd7d982917062475c444335b07fa78ad Author: Alan Garny '' Date: Fri Aug 23 15:45:29 2013 +0200 Some minor cleaning up. commit f5d4492692baea8d70ccd7e845ce835ff5854304 Author: Alan Garny '' Date: Fri Aug 23 15:42:05 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the line for mfrac being too thin '(#225).' commit a4692db0084e11a67a34c72971a125013a4e9798 Author: Alan Garny '' Date: Fri Aug 23 15:41:30 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the line for mfrac being too thin '(#225).' commit 9e1ed6a229dfd2ea7a6c950502e5ef2069d5d5bf Author: Alan Garny '' Date: Fri Aug 23 11:28:12 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the sub and sup bits of msubsup overlapping '(#225).' commit 9854cc81f4a4d84ef5b87a35c09294143240cd9c Author: Alan Garny '' Date: Fri Aug 23 10:50:27 2013 +0200 Added a link to 'OpenCOR'\''s' Twitter account '(closes' '#227).' commit 6270f643d72124de988a8dc5b4a6102734dcff4b Author: Alan Garny '' Date: Thu Aug 22 19:31:11 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the horizontal line for msqrt and mroot being too thin on all platforms and even too low on Windows '(#225).' commit 888e861ef6dc673a38affd7ce77894cfc76120c6 Author: Alan Garny '' Date: Thu Aug 22 19:09:37 2013 +0200 'Qwt'\''s' MathML renderer: fixed the issue of the horizontal line for msqrt and mroot being too thin on all platforms and even too low on Windows '(#225).' commit 7bb27443eeee2dff78119c9193133279b0fbf080 Author: Alan Garny '' Date: Thu Aug 22 13:33:27 2013 +0200 Some cleaning up of 'Qwt'\''s' MathML engine. commit 5d77aa87cf95f2c0bbed0b80cd9b39c9336502dc Author: Alan Garny '' Date: Wed Aug 21 20:17:13 2013 +0200 Some cleaning up of 'Qwt'\''s' MathML engine. commit 6f827b06f238ec0fb1d2f27b8bf1eb0697423632 Author: Alan Garny '' Date: Wed Aug 21 20:15:45 2013 +0200 Some cleaning up of 'Qwt'\''s' MathML engine. commit 949b8edb5606ea3e3eebff2a8002617436f872d6 Author: Alan Garny '' Date: Wed Aug 21 19:57:14 2013 +0200 Some cleaning up of 'Qwt'\''s' MathML engine. commit 7cfecb4065b75ce45c86df868f4ed8c2e9d77439 Author: Alan Garny '' Date: Wed Aug 21 19:50:59 2013 +0200 Some cleaning up of 'Qwt'\''s' MathML engine. commit 9f94b3f150bf325db72b8821ec731152d80e64b1 Author: Alan Garny '' Date: Wed Aug 21 19:15:51 2013 +0200 Some minor cleaning up. commit eff4fbe8faf79c1788b4b1e48c64a744f3a24850 Author: Alan Garny '' Date: Wed Aug 21 19:04:50 2013 +0200 Slight improvement to our Viewer widget. commit bd2dea456cf406b9c70248ed476efedf098ff5bb Author: Alan Garny '' Date: Wed Aug 21 18:16:28 2013 +0200 Re-enabling our '(temporarily)' disabled plugins. commit c9e2992a1bbe80fdd99311e6d17406fa6cba9c91 Author: Alan Garny '' Date: Wed Aug 21 18:14:20 2013 +0200 Slight improvement to our Viewer widget. The previous commit was fine for Linux and OS X, but not 'Windows!' commit 2cf2ff3ed591f2195c604b2f0123eb790019362e Author: Alan Garny '' Date: Wed Aug 21 18:06:59 2013 +0200 Slight improvement to our Viewer widget. commit 770eeae2cb65d4d0944d046e47b145d27d7ac22a Author: Alan Garny '' Date: Wed Aug 21 18:01:39 2013 +0200 Some minor cleaning up. commit 068486db33d4d10268741fcbb63781158e870ea7 Author: Alan Garny '' Date: Wed Aug 21 18:01:26 2013 +0200 Fixed the issue with 'Qwt'\''s' MathML engine '(closes' '#222).' commit eb94951a12af44872428949d8aa3191fdd503311 Author: Alan Garny '' Date: Wed Aug 21 17:59:07 2013 +0200 Some minor cleaning up. commit ed8916f43782c0c5bf4fd73bd5407892a4714ab8 Author: Alan Garny '' Date: Wed Aug 21 17:54:27 2013 +0200 Some minor cleaning up. commit 477e85a98f34233f46d20b4920b1cab105096563 Author: Alan Garny '' Date: Wed Aug 21 16:54:52 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit cffa11eb84e0da3bf38180c6c0ce4ddfca2663ae Author: Alan Garny '' Date: Wed Aug 21 16:45:19 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' Kind of starting afresh in that we have reverted our use of 'devicePoint(relOrigin()).' Also made a few changes that we made in QtMmlWidget back then. commit 3ffc484fdfefd856a80eb7f1ec3a3afc82b42df4 Author: Alan Garny '' Date: Wed Aug 21 13:32:48 2013 +0200 Suggest a minimum size for our viewer widget. commit f7cf2a697cfc94e184d46ebb7163ea69cb678937 Author: Alan Garny '' Date: Tue Aug 20 19:33:00 2013 +0200 '(Temporarily)' disabling some plugins. commit 9638e8e5aac1c6d29d492d0a58902b46a3cabb7e Author: Alan Garny '' Date: Tue Aug 20 19:27:12 2013 +0200 Some work on our Viewer widget. commit 1b395682233d7d8e6ff211102aa6946e1e4027ef Author: Alan Garny '' Date: Tue Aug 20 18:37:18 2013 +0200 Some work on our Viewer widget. commit a9f53e0b9ef378a2a2a1ead89ee1649ae240e3ca Author: Alan Garny '' Date: Tue Aug 20 17:17:22 2013 +0200 Our logo 'didn'\''t' get properly renamed '(on' 'Linux)' in a previous commit '(from' 'Windows).' commit ab3137b615a7cfb9881d50df568158100b7ce664 Author: Alan Garny '' Date: Tue Aug 20 16:09:48 2013 +0200 Some work on our Viewer widget. commit ea3e13fe4cc67664f160691d0b6dcd6e5323ee14 Author: Alan Garny '' Date: Tue Aug 20 15:56:54 2013 +0200 Some work on our Viewer widget. commit 65f2ab3ff2432f3c5183ec83b15884a37b981a03 Author: Alan Garny '' Date: Tue Aug 20 11:43:32 2013 +0200 Some minor cleaning up. commit cfc044de4596e77acb4d491030b0c696bb2e2874 Author: Alan Garny '' Date: Mon Aug 19 17:53:47 2013 +0200 Some minor cleaning up. commit bc8bbaf8de9cd0df75d40f5c71d7363df2ee5f43 Author: Alan Garny '' Date: Mon Aug 19 15:42:50 2013 +0200 Some minor cleaning up. commit 200ceadbc18173c41847a6b0ae3644ef6d7525e5 Author: Alan Garny '' Date: Mon Aug 19 15:40:24 2013 +0200 Some minor cleaning up. commit bba65c5fd8d49cb39f134dfcc1f61ac8ec39a728 Author: Alan Garny '' Date: Mon Aug 19 15:16:13 2013 +0200 Updated the version of the Oxygen library. commit 76eed208e4c3ac1ead005073e1846cc731b7f9a5 Author: Alan Garny '' Date: Mon Aug 19 15:12:16 2013 +0200 Some minor refactoring. commit 44a894d555e48279e49947d7b6ec87868f9be1ce Author: Alan Garny '' Date: Mon Aug 19 13:12:35 2013 +0200 Slight update to the CellMLModelRepository plugin to use an alternative URL to PMR2. commit 31fb0662c14ecc9c0ae3da24e5d0db092c407760 Author: Alan Garny '' Date: Mon Aug 19 13:05:40 2013 +0200 Slight update to the CellMLModelRepository plugin to use an alternative URL to PMR2. Indeed, http://models.cellml.org/workspace/rest/contents.json is reported as being suspicious by Sophos while https://models.physiomeproject.org/cellml/workspace/rest/contents.json 'isn'\''t.' commit 21a9948503e6ae76d1666a2cbc84c322543f821a Author: Alan Garny '' Date: Mon Aug 19 09:53:53 2013 +0200 Our logo 'didn'\''t' get properly renamed '(on' 'Linux)' in a previous commit '(from' 'Windows).' commit 02093f4714b0bba90e9dd2f2a56facee3990aa78 Author: Alan Garny '' Date: Sat Aug 17 12:55:41 2013 +0200 Fixed a couple of issues with Firefox and Internet Explorer when it comes to the copyright information for our documentation / web site. commit 7e880993b929126cbf66fa531cd0d0f419b11723 Author: Alan Garny '' Date: Tue Aug 13 23:27:11 2013 +0200 Fixed a small CSS issue with Internet Explorer '(at' least that 'version).' commit f8c77c82fe8c7774a8962127e83fe7855e6b4c81 Author: Alan Garny '' Date: Tue Aug 13 21:02:37 2013 +0200 Added links to the VPR project. Also some minor cleaning up. commit 9b9431198f0a1b1612d270805f7b9fa8a3ae0865 Author: Alan Garny '' Date: Tue Aug 13 20:44:35 2013 +0200 Fixed a minor issue with our CellMLAnnotationView plugin. commit e945c7ee44c1f8c73f6d97ac349876e8d2f9f3b8 Author: Alan Garny '' Date: Tue Aug 13 18:22:32 2013 +0200 Minor cleaning up of the CellMLAnnotationView plugin. commit ea616cf494322d558209d3fff731dd452d71b302 Author: Alan Garny '' Date: Sat Aug 10 20:55:47 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit d30a952c515c4b6dfa4d01365dfd399149d47100 Author: Alan Garny '' Date: Sat Aug 10 18:01:15 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit 62e427ca5f850d8ab2a9389c6d51eaa07f204acd Author: Alan Garny '' Date: Sat Aug 10 17:48:35 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit b8ec1db7174eec868ebe0bf298d9fa7967acd8be Author: Alan Garny '' Date: Sat Aug 10 17:44:21 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit e007442bf345554aad8cd9d4af6a9ef05ceecf40 Author: Alan Garny '' Date: Sat Aug 10 16:59:07 2013 +0200 Some work on 'Qwt'\''s' MathML engine '(#222).' commit 8c1c96cdd97dbee667449e1a2afed3eebc37b0a9 Author: Alan Garny '' Date: Sat Aug 10 16:38:25 2013 +0200 Some minor cleaning up of 'Qwt'\''s' MathML engine. commit 17048525ab044e361335fbfc392205df3b846dc6 Author: Alan Garny '' Date: Sat Aug 10 15:24:06 2013 +0200 Some minor cleaning up. commit a6b53fb17a2f3c6bea9514123b3c6db35b733124 Author: Alan Garny '' Date: Sat Aug 10 15:16:42 2013 +0200 Argh, Ctrl+Space '(to' show/hide docked 'widgets)' 'doesn'\''t' work on OS 'X!' commit 28d08af1a66eb4d90490d61f88fb19a61b04335f Author: Alan Garny '' Date: Sat Aug 10 14:54:27 2013 +0200 Also use Ctrl+Space on OS X to show/hide docked widgets. commit cb0fcf46c80f967367eeefa85fb3d1b50fe821ae Author: Alan Garny '' Date: Sat Aug 10 14:33:51 2013 +0200 Some minor cleaning up of 'Qwt'\''s' MathML engine. commit c52648f53496f320be373e826edc90bbea71dea7 Author: Alan Garny '' Date: Sat Aug 10 13:58:31 2013 +0200 Some minor cleaning up of 'Qwt'\''s' MathML engine. commit 7f59b0afc8469736d259fbdfb50d3a9e1a29906c Author: Alan Garny '' Date: Fri Aug 9 19:23:13 2013 +0200 Minor update to the version of the Oxygen icons we use. commit 8380a3193433f442f28177907d9ecc3c96078c01 Author: Alan Garny '' Date: Thu Aug 8 16:39:46 2013 +0200 Fixed an issue with integer properties in PropertyEditorWidget. We were allowed to enter something like 1e3, yet 'QString::toInt()' 'wouldn'\''t' recognise it... commit c8408770c2a6a19591f4fffb6f5c302aefd49a4b Author: Alan Garny '' Date: Thu Aug 8 14:01:04 2013 +0200 Some minor cleaning up. commit 5654d8be712d7d6b14384748c7efb3aa37783e66 Author: Alan Garny '' Date: Thu Aug 8 13:49:05 2013 +0200 Some minor improvement to our Viewer plugin '(#222).' commit 359eeb66442feb349cedcf4d7f3e6c7c051e63c0 Author: Alan Garny '' Date: Thu Aug 8 13:47:09 2013 +0200 Some minor cleaning up. commit 86cf7944df8b08b471f229c26221db557506754b Author: Alan Garny '' Date: Thu Aug 8 13:47:03 2013 +0200 Some minor improvement to our Viewer plugin '(#222).' commit b3e4fb63123c6ccd5f7285b89cae3a78ab8a63ae Author: Alan Garny '' Date: Thu Aug 8 13:31:45 2013 +0200 Fixed a small issue of compilation for our Viewer plugin on Windows. commit d186dafadcc65e9f4bdc72dff4bd151df647399f Author: Alan Garny '' Date: Thu Aug 8 13:17:48 2013 +0200 Some minor cleaning up. commit fd92fe6956e2349974a33b079244484706f30085 Author: Alan Garny '' Date: Thu Aug 8 13:11:43 2013 +0200 Now have a way to clear previously computed data '(closes' '#223).' commit 77903b21dc38252777d671214be73f45a1b3e90c Author: Alan Garny '' Date: Thu Aug 8 11:31:15 2013 +0200 Some work on getting ViewerWidget to work as it used '(#222).' commit 7485ef12d25e425de3a14b6f604db70974c9dd72 Author: Alan Garny '' Date: Thu Aug 8 09:53:02 2013 +0200 Fixed some corner case issues with our optimising of axes in our graph panels. commit f7f26a5d0d9c941d90526b98854a53081d556aa3 Author: Alan Garny '' Date: Wed Aug 7 16:00:33 2013 +0200 Removed our dependency on QtMmlWidget '(closes' '#221).' Note that our MathML viewer is not working as it used to anymore. Most likely some differences between QtMmlWidget and the version used in Qwt. commit 367772aefa07d964e0e15f2954c134d90a611cfa Author: Alan Garny '' Date: Wed Aug 7 09:37:04 2013 +0200 Fixed an issue that made OpenCOR crash upon starting when a plugin needed another plugin which 'wasn'\''t' available '(closes' '#220).' commit bfe1a1dd5a01a97bde37ee9443d7d8bb5fb1cf1e Author: Alan Garny '' Date: Tue Aug 6 19:10:43 2013 +0200 Fixed a small compilation issue with our CellMLAnnotationView plugin on Windows. commit 4b4e9f5e974d5be14cf22644e82ae9fddd2555b0 Author: Alan Garny '' Date: Tue Aug 6 18:30:12 2013 +0200 Fixed the exporting of some classes on Windows. commit 1c1a8e5e17f0e391fe88ca44f5c76937023aa3a6 Author: Alan Garny '' Date: Tue Aug 6 18:09:22 2013 +0200 Forgot to export some classes for Windows. commit 773046e1d0fc5d17eac29bc4ddef015c45927114 Author: Alan Garny '' Date: Tue Aug 6 17:53:30 2013 +0200 Fixes the issue with trying to open the plugins window when no selectable plugins are available '(but' at least one non-selectable plugin 'is)' '(closes' '#219).' commit 8ed9fe1cbd52caa3a9191251532fe4a32f5f020a Author: Alan Garny '' Date: Tue Aug 6 17:29:58 2013 +0200 Re-enabled our editing views '(RawView' and 'RawCellMLView).' Also added a way to show/hide inherited menus/actions. commit cba9be5f932f24a195f7d57a25bf04b4b4663bfe Author: Alan Garny '' Date: Mon Aug 5 20:06:10 2013 +0200 New snapshots. commit c12e5ecf52e87590afca3f60cfc931635370a648 Author: Alan Garny '' Date: Mon Aug 5 20:01:19 2013 +0200 Wrong screenshot file. commit 0a47cfd71c49c5ec0c2ea8158d144973b7315f2a Author: Alan Garny '' Date: Mon Aug 5 19:54:29 2013 +0200 Updated the user documentation with regards to the new features in our simulation plugin '(closes' '#31).' commit 456951fa0f5ea9c6fb57d1c57af51e4a40152c1a Author: Alan Garny '' Date: Mon Aug 5 17:28:54 2013 +0200 Updating the user documentation with regards to the new features in our simulation plugin '(#31).' commit 46ca5062b092037db10d490ba052ce9473bea4c2 Author: Alan Garny '' Date: Mon Aug 5 17:00:30 2013 +0200 Added a readme file for generating documentation screenshots. commit ffd34dc064cf073facafb1e29a1f1e9d3db10e6c Author: Alan Garny '' Date: Mon Aug 5 17:00:10 2013 +0200 Slight updates to the user documentation '(#31).' commit 41afe193287517612949921f24b8e412f6ea5f42 Author: Alan Garny '' Date: Mon Aug 5 16:32:11 2013 +0200 Minor update to our developer documentation. commit fc50f405586b7ed678d9786c174d54a70e6acb53 Author: Alan Garny '' Date: Mon Aug 5 16:12:50 2013 +0200 Some minor comments. commit 82b7504b8dbc69a0629338b28e8b0d9a090e0f33 Author: Alan Garny '' Date: Mon Aug 5 15:40:47 2013 +0200 Distinguish unlocked graphs '(in' 'blue)' from locked ones '(in' 'red)' '(#31).' commit 222350f848b334d07d731a2df418f794598c2b82 Author: Alan Garny '' Date: Mon Aug 5 15:34:22 2013 +0200 Distinguish unlocked graphs '(in' 'blue)' from locked ones '(in' 'red)' '(#31).' commit c88ada56e6397662cfb626b205b5e18fb9a976e2 Author: Alan Garny '' Date: Mon Aug 5 15:27:52 2013 +0200 Improved the setting of our axes '(#31).' commit 1ed84d58b3a85bcd8a0e4bedac8d012aae04d6e9 Author: Alan Garny '' Date: Mon Aug 5 14:33:23 2013 +0200 Some work on the plotting of graphs '(#31).' commit 4eaa9334b1379cb9220f674cd37d36a3e2daf258 Author: Alan Garny '' Date: Mon Aug 5 13:21:13 2013 +0200 Improved our property editor widget by allowing a property to be checked/unchecked. commit 9c67c4a24f41f0224b5a10e5b01fbca1b9a0a5c4 Author: Alan Garny '' Date: Sun Aug 4 19:47:49 2013 +0200 Some work on the plotting of graphs '(#31).' commit ed7e2d58c4ca774dec0789854d0cc8c38ab0303c Author: Alan Garny '' Date: Sun Aug 4 19:33:13 2013 +0200 Some minor cleaning up. commit 1bb91ccc8ee1769f7ab5da68efa6c870d736f07c Author: Alan Garny '' Date: Sun Aug 4 16:50:25 2013 +0200 Some '(very)' minor improvement. commit e15f020639844fb665262cf8b6c8d44e52868c77 Author: Alan Garny '' Date: Sun Aug 4 13:17:07 2013 +0200 Minor comment. commit 44f2795f7243f74d6b1760c03ca29a7deb3dde1d Author: Alan Garny '' Date: Sat Aug 3 13:49:57 2013 +0200 Addressed an issue with removing a graph panel which contains at least one graph '(#31).' commit 0dffceb402c2ff08605d317befc6ac09c1597e0d Author: Alan Garny '' Date: Sat Aug 3 00:16:00 2013 +0200 Added a comment. commit 62d929a1e1dcf1f532d5566ac12b1f62ee96e0dc Author: Alan Garny '' Date: Fri Aug 2 18:45:01 2013 +0200 Some work on the plotting of graphs '(#31).' commit 4a36058a94601c80a6d926e187d8e6458a189ff7 Author: Alan Garny '' Date: Fri Aug 2 17:55:11 2013 +0200 Fixed a small issue with building OpenCOR from the command line '(closes' '#218).' commit abfa943e25ccebabe37a1e4e8af0438285b873a5 Author: Alan Garny '' Date: Fri Aug 2 15:46:30 2013 +0200 Some minor fixes '(#31).' commit 58ab8b473f60e9696b83db442018b68d80abcb0b Author: Alan Garny '' Date: Fri Aug 2 14:53:55 2013 +0200 Some minor cleaning up. commit 60990ace9364fddfd6ac2589739a6547809e9ebf Author: Alan Garny '' Date: Fri Aug 2 14:14:52 2013 +0200 Some minor cleaning up '(following' the closing of 'https://bugreports.qt-project.org/browse/QTBUG-29549).' commit fd4a6ed5d9614cd3441076d23b8412c6d81083fa Author: Alan Garny '' Date: Fri Aug 2 14:03:50 2013 +0200 Some work on the plotting of graphs '(#31).' commit d24348c2410e8ad66cad3becac72accd493535c9 Author: Alan Garny '' Date: Fri Aug 2 11:52:45 2013 +0200 Some work on the plotting of graphs '(#31).' commit 72ea9cc7a0294ea1d0ab3072aa5c07adababb525 Author: Alan Garny '' Date: Fri Aug 2 10:51:54 2013 +0200 Some work on the plotting of graphs '(#31).' commit 00f42b1a982163fc520a5469c03d1682fc311bbd Author: Alan Garny '' Date: Thu Aug 1 20:28:54 2013 +0200 Some work on the plotting of graphs '(#31).' commit 8e72e6e59018a960225314066e0a50f208a82c38 Author: Alan Garny '' Date: Thu Aug 1 16:07:55 2013 +0200 Some work on the plotting of graphs '(#31).' commit 004b3b4063ddfdb367541a7a3057b14970ba7c82 Author: Alan Garny '' Date: Thu Aug 1 15:21:10 2013 +0200 Some work on the plotting of graphs '(#31).' commit 127c5e0e409d8279bad244105b938ce1e57346c7 Author: Alan Garny '' Date: Thu Aug 1 14:43:46 2013 +0200 Some work on the plotting of graphs '(#31).' commit 404d9fae10809f1943130630b04cfecf9d9973e2 Author: Alan Garny '' Date: Wed Jul 31 18:50:53 2013 +0200 Some work on the plotting of graphs '(#31).' commit 703adacd0a954824d1c76d5c9027db8149351608 Author: Alan Garny '' Date: Wed Jul 31 14:51:28 2013 +0200 Minor fix to our graphs property editor '(#31).' commit a03d993cf8da923778e16bb0087fed0c57dc49bd Author: Alan Garny '' Date: Wed Jul 31 14:48:33 2013 +0200 Some work on the plotting of graphs '(#31).' commit 9af87d4e70972ad568dfce69ee0ddccaa897a9b3 Author: Alan Garny '' Date: Wed Jul 31 11:31:24 2013 +0200 Some work on the plotting of graphs '(#31).' commit baeb5de3f383365f05377bd921246149737d5a3a Author: Alan Garny '' Date: Tue Jul 30 17:17:25 2013 +0200 Some minor cleaning up. commit 85a0c12e2934ba982a2f7f756b51e4676b5c620d Author: Alan Garny '' Date: Tue Jul 30 15:46:28 2013 +0200 Some work on plotting graphs for another simulation '(#31).' Also some refactoring. commit cb1471d54b698de1e636696e26a862ee9ab806c2 Author: Alan Garny '' Date: Tue Jul 30 15:25:57 2013 +0200 Some minor refactoring '(#31).' commit a37741dc3a22a94f5726bd14a04858b4b991ae2c Author: Alan Garny '' Date: Tue Jul 30 14:16:59 2013 +0200 Some minor cleaning up '(#31).' commit 06a9393af0e2ccf8faac5328bd79245b90d7892c Author: Alan Garny '' Date: Tue Jul 30 11:12:31 2013 +0200 Some minor cleaning up '(#31).' commit e59c1916300758cb97f606b18c8323bf39e6afe2 Author: Alan Garny '' Date: Mon Jul 29 17:01:02 2013 +0200 Some minor cleaning up '(#31).' commit 827d799b6dc136053b5087af09f53744b18ceeec Author: Alan Garny '' Date: Mon Jul 29 16:40:32 2013 +0200 Some minor cleaning up '(#31).' commit 0553753c84485f17e3e986e107c8c9098a336241 Author: Alan Garny '' Date: Mon Jul 29 14:34:03 2013 +0200 Some minor cleaning up '(#31).' commit 6d60dd0b194e0a352f1687d265ff440864e7269c Author: Alan Garny '' Date: Mon Jul 29 13:34:39 2013 +0200 Some minor cleaning up '(#31).' commit 9ecdd21d999bd30dfb4c391c5f66c0fd31945b55 Author: Alan Garny '' Date: Mon Jul 29 11:32:32 2013 +0200 Some minor cleaning up '(#31).' commit 6abd59bf8f2614ddceb7368bf20c6f0761889978 Author: Alan Garny '' Date: Fri Jul 26 18:31:26 2013 +0200 Made our simulation output widget read-only and not accepting drops. commit 793d01e8470c2713622fbc16013052c88a85cc8e Author: Alan Garny '' Date: Fri Jul 26 18:12:15 2013 +0200 Some minor cleaning up '(#31).' commit fc5611d277361cbb4fe5ec3ac6e234e2bfe873f9 Author: Alan Garny '' Date: Fri Jul 26 17:04:15 2013 +0200 Fixed various potential issues with a CellML file with no runtime '(i.e.' the CellML file is 'malformed).' commit 03e7467d76bcedc4a5ff4950091099a3d3af315e Author: Alan Garny '' Date: Thu Jul 25 17:58:28 2013 +0200 Some work on plotting any parameter against any other '(#31).' commit 097f9a9429fc5f693d0efeb08843ed3d62a0cdb0 Author: Alan Garny '' Date: Thu Jul 25 11:38:07 2013 +0200 Updated our copy of QtSingleApplication '(from' the Qt Creator repository, as 'always).' commit fc4499e2d19e94dbc7faae49e265f0b3f3474669 Author: Alan Garny '' Date: Thu Jul 25 11:23:26 2013 +0200 Updated/cleaned up the information about our third-party libraries. commit afb40eb481405ea3f1dba1f33dabb17d2edaa474 Author: Alan Garny '' Date: Thu Jul 25 11:23:00 2013 +0200 Some minor cleaning up '(#31).' commit c9e70be4f589bb6f5e42253e165e053399a2f202 Author: Alan Garny '' Date: Thu Jul 25 09:35:33 2013 +0200 Some minor cleaning up '(#31).' commit 9cc245cf5c6b37cfa29907c24ff6316bae6457ca Author: Alan Garny '' Date: Thu Jul 25 09:14:23 2013 +0200 Some minor cleaning up '(#31).' commit 67dc7d5a5fbfab4e1f7962dfeaae62bf760deac3 Author: Alan Garny '' Date: Wed Jul 24 19:01:31 2013 +0200 Some minor cleaning up '(#31).' commit f295b20e0f6740750f2e96fff4321b0b11001bfe Author: Alan Garny '' Date: Wed Jul 24 17:43:49 2013 +0200 Our main simulation widget can now keep track the addition, removal and updating of a graph '(#31).' commit 0d9d973e796f42a19e82ee36d0e15da1a2d38d52 Author: Alan Garny '' Date: Wed Jul 24 15:27:18 2013 +0200 Some minor cleaning up '(#31).' commit 84bbfd634cb3c8ffca33a3cbc2bcd87a25c5e821 Author: Alan Garny '' Date: Wed Jul 24 14:28:07 2013 +0200 Some minor cleaning up '(#31).' commit c16318ee4dae410bd681910d2a3bfbe96103257b Author: Alan Garny '' Date: Wed Jul 24 11:53:22 2013 +0200 Can now remove the current graph panel or all of them '(but' the first 'one)' '(#31).' commit 88846bb431355ed36bc39870c42da022cf80d0e1 Author: Alan Garny '' Date: Tue Jul 23 19:03:29 2013 +0200 Some minor cleaning up of our CellML 1.1 to 1.0 exporter. commit 623d3ffa1ca73c78849b550fc62b35fc56f57a43 Author: Alan Garny '' Date: Tue Jul 23 10:45:57 2013 +0200 Removed '"&"' from our actions '(closes' '#216).' commit 42d5035e21275c06f986d733d5b35904db87e07f Author: Alan Garny '' Date: Mon Jul 22 18:50:18 2013 +0200 Can now remove all graphs '(#31).' commit 4072bdd13500a1ea71012c72d5c215ca5bdadaf3 Author: Alan Garny '' Date: Mon Jul 22 18:47:54 2013 +0200 Can now remove the current graph '(#31).' commit db85d220248cab44c20bd5258cadd919d43f574f Author: Alan Garny '' Date: Mon Jul 22 18:07:56 2013 +0200 Some minor improvements to our simulation plugin. commit 7004e62c75914f85232566d443e3a953ed1509c8 Author: Alan Garny '' Date: Mon Jul 22 17:20:34 2013 +0200 Some minor cleaning up. commit 0c06d2d18d44f77dfa1366a07325c9246d7b34c4 Author: Alan Garny '' Date: Mon Jul 22 16:43:14 2013 +0200 Make sure the graph object gets updated upon changing the value of the X or Y parameter '(#31).' commit 459153fd8e366ae9222c4edf24e64a47f558f431 Author: Alan Garny '' Date: Mon Jul 22 16:04:59 2013 +0200 Can now ''\''properly'\''' add a graph ''\''manually'\''' '(#31).' commit 3e2fd9e11c3673b31b1326838f1a01e394a338e4 Author: Alan Garny '' Date: Mon Jul 22 15:13:07 2013 +0200 Some minor cleaning up. commit cef0a51dd0a5e78fd61718a853a70337b7e1e190 Author: Alan Garny '' Date: Mon Jul 22 14:40:30 2013 +0200 Can now ''\''manually'\''' add a graph '(#31).' commit f3cc5cef2d87e60a3b30cc878d935611fd151ccb Author: Alan Garny '' Date: Mon Jul 22 13:55:48 2013 +0200 Some work on the context menu for our graphs property editor '(#31).' commit 22c403541337facc65542d5d6ea236582344b656 Author: Alan Garny '' Date: Mon Jul 22 12:55:58 2013 +0200 Minor improvement to our tree view widget. commit d808661cd4013c2e1d11d639fd346fce1ab86ca0 Author: Alan Garny '' Date: Mon Jul 22 10:36:03 2013 +0200 Fixed a QSettings issue with OS X. commit 0a1606925024f5f8f333ff8efe587d2ffbac13be Author: Alan Garny '' Date: Sat Jul 20 11:20:09 2013 +0200 Some minor cleaning up. commit d5042e7a8d5bc07268a4e64833cb153644ca5c68 Author: Alan Garny '' Date: Fri Jul 19 18:13:07 2013 +0200 Started some work on a general context menu for our graphs property editor '(#31).' commit cc3956f3f756526f1fd1a1e6391a5543b6f769bb Author: Alan Garny '' Date: Fri Jul 19 17:42:13 2013 +0200 Started some work on a general context menu for our graphs property editor '(#31).' Also removed our '"There' are no 'graphs…"' message. commit 218bab435cd1fdb5dd6fb3066992573ee9989564 Author: Alan Garny '' Date: Fri Jul 19 17:01:47 2013 +0200 Slight improvement to our tree view widget. commit 7c3dc590b4d7a72a53feefd47e2604350f5f9a0a Author: Alan Garny '' Date: Fri Jul 19 16:41:43 2013 +0200 Some minor cleaning up '(#31).' commit ef7b6a8a170d27d96d0273fffeaa1da1c741ead2 Author: Alan Garny '' Date: Fri Jul 19 16:30:02 2013 +0200 Fixed an issue with setting the value of a model property directly '(#31).' commit 7d0c0b5ef3aab201b3a53e11890c6e8089262194 Author: Alan Garny '' Date: Fri Jul 19 14:54:36 2013 +0200 Slight improvement to our graphs property editor '(#31).' commit 5b504bf6dcc97d8c9297a78553d26dd92528e635 Author: Alan Garny '' Date: Fri Jul 19 14:12:36 2013 +0200 Slight improvement to our property editor widget. commit 035307c5401d3a95b94b70c38b0142fd172ecc8e Author: Alan Garny '' Date: Fri Jul 19 13:57:04 2013 +0200 Can now update a 'graph'\''s' parameter value through a custom context menu '(#31).' commit 51792e17037b700f8d516cb01c359fb4c2a13888 Author: Alan Garny '' Date: Fri Jul 19 13:46:16 2013 +0200 Some minor cleaning up '(#31).' commit 85ff79e68c25e6748d5c0ccc136e463599cfccb5 Author: Alan Garny '' Date: Fri Jul 19 13:03:01 2013 +0200 Some minor refactoring '(#31).' commit 628236de28b8c36797804910f14f9ecfc348e1f9 Author: Alan Garny '' Date: Fri Jul 19 11:19:41 2013 +0200 Some minor refactoring '(#31).' commit d0d0e6cf6fd6a0edaef8c9a3e3391dc4a5cfb2a6 Author: Alan Garny '' Date: Fri Jul 19 11:19:10 2013 +0200 'Don'\''t' keep track of which graph panel used to be active '(#31).' We will re-enable this the day we also keep track of the required graphs. commit c121005e10476d93e0c0534c1ffa41ba3c964330 Author: Alan Garny '' Date: Fri Jul 19 10:33:37 2013 +0200 Can now handle the properties of a graph that involves a parameter with a non-zero degree '(#31).' commit cc9fec409814c3b1f8b89b872fb2cd25142efd95 Author: Alan Garny '' Date: Fri Jul 19 10:33:05 2013 +0200 Some minor cleaning up. commit 83979a6dcd8d8ee4a657effb00df0fe50fdd3745 Author: Alan Garny '' Date: Fri Jul 19 08:51:17 2013 +0200 Fixed a minor issue with retranslating our graphs property editor '(#31).' commit dea60a206c8c97db3232a99f8f73e1239454fdd9 Author: Alan Garny '' Date: Thu Jul 18 18:51:13 2013 +0200 Fixed a QtWebKit-related issue '(closes' '#206).' commit c1a260f02bd3f54a3bd7d7fe8d6166b5abb027cd Author: Alan Garny '' Date: Thu Jul 18 18:34:43 2013 +0200 Can now lock a graph to a particular model and everything will be fine if the file gets renamed or the locale gets changed '(#31).' commit da3c5c3439dc2eeae721b9bf0e95feb89e15b3e5 Author: Alan Garny '' Date: Thu Jul 18 16:55:23 2013 +0200 Some minor cleaning up. commit e3b05e46119e11286fc42c92b34093ce992c463a Author: Alan Garny '' Date: Thu Jul 18 16:49:05 2013 +0200 Improved our 'Core::getSaveFileName()' method. commit 3f3d4810c79b516b7c8637b3b6f65bf263eb4bff Author: Alan Garny '' Date: Thu Jul 18 16:23:59 2013 +0200 Some minor cleaning up. commit 71458276cde846c094be786778fc423dbb5f349e Author: Alan Garny '' Date: Thu Jul 18 15:46:13 2013 +0200 Can now save an unmodified file under a new name which is already used for an existing file '(closes' '#215).' commit bf583e1336f9cc61d94120b7ae5bfe92855e6fa3 Author: Alan Garny '' Date: Thu Jul 18 15:27:48 2013 +0200 Some work on our graphs property editor '(#31).' commit 03108c0e827b5cbc990cf6038e2173edd1c5f8c2 Author: Alan Garny '' Date: Thu Jul 18 15:07:24 2013 +0200 Slight improvement to our property editor. commit ee0d7158ef9cdb3db391d13527034208d4257a51 Author: Alan Garny '' Date: Thu Jul 18 13:07:59 2013 +0200 Some work on our graphs property editor '(#31).' commit 76fbd2840ff69f25416ed8ecbc84314291b1ef9d Author: Alan Garny '' Date: Thu Jul 18 12:59:52 2013 +0200 Some work on our graphs property editor '(#31).' commit c6c298491ecaff8c4bb2737ac762be0ad2c20d3c Author: Alan Garny '' Date: Thu Jul 18 11:51:29 2013 +0200 Fixed our Saving As of an unmodified file '(closes' '#214).' commit 62982867e9fa79af8689d4b8eb03be64a9dde08c Author: Alan Garny '' Date: Thu Jul 18 11:35:39 2013 +0200 Minor fix to our property editor. commit 19c8c417b8276a6a8a724a5eac8565ed6859b182 Author: Alan Garny '' Date: Thu Jul 18 10:55:10 2013 +0200 Some work on our graphs property editor '(#31).' commit 1e2ebeaa19db79512cfb5ee9dbe81d78fe82012f Author: Alan Garny '' Date: Thu Jul 18 10:54:50 2013 +0200 Can now create a property editor with no unit column '(closes' '#213).' commit 0916e7e1734453a726bd571a7caac5ce6b30fad4 Author: Alan Garny '' Date: Wed Jul 17 19:39:28 2013 +0200 Some minor cleaning up. commit 733a5c1ba6d3671ebf1a77c7b28d50496be22963 Author: Alan Garny '' Date: Wed Jul 17 19:39:23 2013 +0200 Minor fix to our list of recent file names after we have renamed a file. commit 18c666134b5fa1e1e1413c29cd349864b3b6f25d Author: Alan Garny '' Date: Wed Jul 17 19:29:42 2013 +0200 Some work on our graphs property editor '(#31).' commit 84f77738682e8ea850c32422b194b61a1a4880c0 Author: Alan Garny '' Date: Wed Jul 17 18:56:51 2013 +0200 Can now rename an unmodified file '(closes' '#211).' commit edfb51fbc294bff4910b33dbb4d3e1e830630980 Merge: 0803d39d2 f5181b000 Author: Alan Garny '' Date: Wed Jul 17 07:45:18 2013 -0700 Merge pull request '#212' from opencor/issue31 Some work mainly towards issue '#31.' commit f5181b0003550d96b0243b1d6974a47ed603a2cc Author: Alan Garny '' Date: Wed Jul 17 16:43:34 2013 +0200 Minor comment. commit f5b4e486085bb6fe5b9cb5a38c6d7b8e136c5fd7 Author: Alan Garny '' Date: Wed Jul 17 16:27:17 2013 +0200 Some minor improvement to our property editor widget. commit 9f5380eafc5439a4a2fa4557d90122a12dcc7a18 Author: Alan Garny '' Date: Wed Jul 17 16:04:04 2013 +0200 Some minor cleaning up. commit 5d94facd6ba7a2592950261d688e379343fed906 Author: Alan Garny '' Date: Wed Jul 17 15:28:13 2013 +0200 Some work on our graphs property editor '(#31).' commit 912fe8885e5ad7abc0f6682083ad5ec12d884b51 Author: Alan Garny '' Date: Wed Jul 17 14:42:17 2013 +0200 Some work on our graphs property editor '(#31).' commit 3a699d71ed4f054193d0afccfd9becae4e453f14 Author: Alan Garny '' Date: Wed Jul 17 14:02:39 2013 +0200 Some work on our graphs property editor '(#31).' commit 09d57fdbfd868d85ed253c930d769fcf26620243 Author: Alan Garny '' Date: Wed Jul 17 11:24:37 2013 +0200 Some work on our graphs property editor '(#31).' commit 7c6f3823271f8f7b1f8892ccb5b8f84ec5276778 Author: Alan Garny '' Date: Wed Jul 17 10:51:55 2013 +0200 Some work on our graphs property editor '(#31).' commit 0bc720aaf4d968b1f8e56cea7c97ec484afd795d Author: Alan Garny '' Date: Wed Jul 17 10:20:49 2013 +0200 Some work on our graphs property editor '(#31).' commit e9ad500bfc68deca994c33d7ab83522b8a9f92a0 Author: Alan Garny '' Date: Wed Jul 17 09:49:45 2013 +0200 Some work on our graphs property editor '(#31).' commit 8421ac0a40a5971fafba19ba8b8ebde3e0cbdb8b Author: Alan Garny '' Date: Tue Jul 16 18:51:02 2013 +0200 Some work on our graphs property editor '(#31).' commit d03902c8aacc41f85076fb2d36c40364c38a83c3 Author: Alan Garny '' Date: Tue Jul 16 18:44:30 2013 +0200 Improved our GUI interface so that plugins can be told about a file being opened, saved, renamed and closed. commit c3561fc9de556734ed42de7922c0cf4905000969 Author: Alan Garny '' Date: Tue Jul 16 18:00:10 2013 +0200 Improved our GUI interface so that plugins can be told about a file being opened, saved, renamed and closed. commit daac5da354c069f028915c7b0ff5e4469961b4b1 Author: Alan Garny '' Date: Tue Jul 16 15:01:06 2013 +0200 Some work on our graphs property editor '(#31).' commit 86a153819a83a74ddc34dc6e39bfbbdcb9dbc799 Author: Alan Garny '' Date: Mon Jul 15 18:56:38 2013 +0200 Some work on our graphs property editor '(#31).' commit f760bb62095673213f23e016288ace50653c2823 Author: Alan Garny '' Date: Mon Jul 15 16:59:00 2013 +0200 Minor fix for the list editor of our property editor '(#31).' commit 4e3996ad34b1a5312efe23f245b55c3606a10319 Author: Alan Garny '' Date: Mon Jul 15 15:40:52 2013 +0200 Some work on our property editor to support lists with separators '(#31).' commit 5fdd51845db40827892d2be7549ee957626d3af0 Author: Alan Garny '' Date: Fri Jul 12 15:05:04 2013 +0200 Simulation: added some icons for our graphs property editor '(#31).' commit a7c56e27cbeee3e0e6d54ec6eaf5428f5be1ad4a Author: Alan Garny '' Date: Fri Jul 12 14:49:31 2013 +0200 QTreeViewWidget: removed the mouse double-click handling. We were originally trying to address an issue with double-clicking on a checkbox which would expand/collapse a graph property '(in' the simulation 'view)' and that was because of our handling a mouse double-click. It was probably handled because of something else preventing a mouse double-click from 'working?' Whatever the case, mouse double-clicking expands/collapses a property unless 'it'\''s' done over a check box, in which case it will just change the check box state. commit f34e7dcb88b0f5dd362a72ee30a015e65bce7b47 Merge: b78556180 0803d39d2 Author: Alan Garny '' Date: Fri Jul 12 14:30:54 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 0803d39d2f02a37c26e9ffd394d3e48497957992 Author: Alan Garny '' Date: Fri Jul 12 14:29:42 2013 +0200 Upgrade jQuery from version 1.10.1 to version 1.10.2. commit b78556180f500f73c0a73cab34be87b14c66d81c Author: Alan Garny '' Date: Fri Jul 12 14:18:50 2013 +0200 Make a graph section checkable '(and' checked by 'default)' '(#31).' commit 57edd87f9844f6e6f45c86fb85570582f317af64 Author: Alan Garny '' Date: Fri Jul 12 13:44:49 2013 +0200 Simulation: fixed a small issue with our progress bar tab icon '(closes' '#210).' commit 92bbed22784e941dbcb83a42fedb217af0fbfea4 Author: Alan Garny '' Date: Fri Jul 12 13:34:53 2013 +0200 Some major refactoring of our property editor widget. Also, some improvements here and there. This now needs ''\''proper'\''' testing. commit 7421ce2d596c4a5eca118db300b30c216c5d6cee Author: Alan Garny '' Date: Wed Jul 10 16:59:58 2013 +0200 Some minor refactoring '(#31).' commit 9383c06595276afc53f22917e63a8bd8012aaa63 Author: Alan Garny '' Date: Wed Jul 10 14:34:24 2013 +0200 Some minor cleaning up. commit 75f7b5186c0f05df898951d141077f55ad70a84d Author: Alan Garny '' Date: Wed Jul 10 13:44:41 2013 +0200 Keep track of the size of the columns of our graphs panel '(#31).' commit 05afc67179b7ef98ee0bbf5f95d2ce4dab73f2c6 Author: Alan Garny '' Date: Wed Jul 10 13:08:24 2013 +0200 Some minor cleaning up. commit 5fc51cd21a278f7481053e02de6dec5c5a0446b0 Author: Alan Garny '' Date: Wed Jul 10 13:03:08 2013 +0200 Some minor refactoring '(#31).' commit 7482150d77491c0115060639035367a5b998d3d5 Author: Alan Garny '' Date: Wed Jul 10 11:53:00 2013 +0200 Some minor refactoring '(#31).' commit e11b9edc110067664b26c8b1a3f4a5a92034a9b1 Author: Alan Garny '' Date: Wed Jul 10 11:45:37 2013 +0200 Some minor refactoring '(#31).' commit cd52c27a5032c9f384765215eea7a0a6140769e4 Author: Alan Garny '' Date: Wed Jul 10 11:44:22 2013 +0200 Some minor refactoring '(#31).' commit 2a41a8a5ea45a082e0912d25797337f0a6874eff Author: Alan Garny '' Date: Wed Jul 10 11:17:44 2013 +0200 Some minor refactoring '(#31).' commit 07073f7a21620055890b5fc927dc3264db3d9f77 Author: Alan Garny '' Date: Wed Jul 10 11:13:46 2013 +0200 Some minor refactoring '(#31).' commit 2a5af5b395c053242c834d68afab72d2af23ab6c Author: Alan Garny '' Date: Wed Jul 10 11:07:02 2013 +0200 Some minor cleaning up and refactoring '(#31).' commit c0ca68e21093fb99ca637feae0b1c2fa61fda618 Author: Alan Garny '' Date: Wed Jul 10 10:14:07 2013 +0200 Slight updates to our user documentation '(following' the removal of the midpoint 'solver).' commit ab413d33dbbd90c337131fc15e54358a08befd70 Author: Alan Garny '' Date: Wed Jul 10 10:07:40 2013 +0200 Slight updates to our user documentation '(following' the removal of the midpoint 'solver).' commit 3db6ed42744f7d7cae84a52e557b5a75c3bc3d4a Author: Alan Garny '' Date: Wed Jul 10 10:00:48 2013 +0200 Updated our VOI icon '(#31).' commit aa5a14c4a22e501c513ea8d75d0b8096db4224c3 Author: Alan Garny '' Date: Tue Jul 9 18:35:16 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 47243af59be8cc161edb156d10d2f6d2fc12825d Author: Alan Garny '' Date: Tue Jul 9 18:14:59 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 74360836bb0a553791715fc6548d352a63209894 Author: Alan Garny '' Date: Tue Jul 9 16:22:19 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit f4632a2a03ddb564e3156c935fd0989302fb9e18 Author: Alan Garny '' Date: Tue Jul 9 15:01:45 2013 +0200 Some minor cleaning up. commit 937a0b9aec15a505bfc9d2e939b9a556cec500e8 Author: Alan Garny '' Date: Tue Jul 9 13:29:09 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 54c2e0b7185d49a27743ca9e328d6bbf29c905fc Author: Alan Garny '' Date: Tue Jul 9 11:26:57 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit dc02b0ae4261a25e6f0b28ad780062a8167ee74a Author: Alan Garny '' Date: Mon Jul 8 18:12:13 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 3d7e9b5842cbfc3ee14030fbc947312bbfb19bce Author: Alan Garny '' Date: Mon Jul 8 16:44:27 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 80f695cc1f1b4276dd35d622936d351e0b72f741 Author: Alan Garny '' Date: Mon Jul 8 16:27:48 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit d9d9d7210ac1bc4a76091b7ea8af8cbe99266a3e Author: Alan Garny '' Date: Mon Jul 8 15:30:05 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit bebf3e87b10f937dde215be8ff4b245a0595103f Author: Alan Garny '' Date: Mon Jul 8 15:24:19 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 1ed9fc1b7aaf33e66593234e5ca4eb9512b609c7 Author: Alan Garny '' Date: Mon Jul 8 14:35:03 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit ec8157a5d5f00416b448cf5c085996e069043e41 Author: Alan Garny '' Date: Mon Jul 8 11:55:10 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit e5a34336fe7585f51993849a733c9c6bd0d99cc6 Author: Alan Garny '' Date: Mon Jul 8 10:34:00 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 1c3864400960c212bc934a022fb2506b2d1628e0 Author: Alan Garny '' Date: Mon Jul 8 10:29:54 2013 +0200 Some work on our single cell simulation plugin '(#31).' commit 251c65547df3a80b3148b35c02627278fd2c5be4 Merge: cfd671ceb d4d9e8b91 Author: Alan Garny '' Date: Sat Jul 6 22:44:45 2013 +0200 Merge branch ''\''master'\''' into issue31 commit d4d9e8b91ef9e8733257392e83e08f5d8ecd5999 Author: Alan Garny '' Date: Sat Jul 6 22:41:06 2013 +0200 Removed the midpoint ODE solver since 'it'\''s' the same as RK2 '(closes' '#209).' commit cfd671cebf49bcb54ab898cdbc50a261a70a40f6 Merge: 7dc24a293 795acd119 Author: Alan Garny '' Date: Fri Jul 5 18:40:39 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 795acd1194bca23c87423f52bebbfd476d713937 Author: Alan Garny '' Date: Fri Jul 5 18:40:16 2013 +0200 Slight updates to our user documentation. commit 7dc24a293fe20fd83247de2d55850f39030c0d9b Merge: 2b9284971 b833ae084 Author: Alan Garny '' Date: Fri Jul 5 18:14:00 2013 +0200 Merge branch ''\''master'\''' into issue31 commit b833ae084e0392eaeb048ec9728fcbde21e3dca4 Author: Alan Garny '' Date: Fri Jul 5 18:12:52 2013 +0200 Simulation plugin: made sure that we 'don'\''t' emit signal in our main simulation loop '(closes' '#208).' commit c17858cf16ffd9a6f0a41c2b401448078dff9d02 Author: Alan Garny '' Date: Fri Jul 5 17:01:42 2013 +0200 Simulation plugin: improved the speed with which we check that constants and/or states have been modified. commit 2b9284971ce55067e22a432e902b2fbc7e9ef13f Merge: 0f3fe5170 2c09af2ac Author: Alan Garny '' Date: Fri Jul 5 14:08:37 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 2c09af2acf1199f61f89337fd9f037aea5854f0e Author: Alan Garny '' Date: Fri Jul 5 14:00:14 2013 +0200 Updated our LLVM binaries '(following' the release of Qt '5.1).' commit 0f3fe5170cccf20e3a179a7137bf2adb4620538a Merge: e69ac7b7a ce5cfa43d Author: Alan Garny '' Date: Thu Jul 4 19:46:45 2013 +0200 Merge branch ''\''master'\''' into issue31 commit ce5cfa43d74dbc7a48b5e873031a8442755397ca Author: Alan Garny '' Date: Thu Jul 4 19:46:24 2013 +0200 Minor update to our user documentation. commit e69ac7b7aefaa4cc463caf742d687c713e87e5f2 Merge: 0af80a9ee 94187e024 Author: Alan Garny '' Date: Thu Jul 4 19:44:51 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 94187e0247906e685c4efa5d26e7ff7db0c6ba66 Author: Alan Garny '' Date: Thu Jul 4 19:43:22 2013 +0200 Some minor improvement to our 'File|Quit' menu. commit 0af80a9ee2cf03b8a2f42e95ae2e315242920fe5 Merge: e0150684a 90f0c8ee6 Author: Alan Garny '' Date: Thu Jul 4 19:28:51 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 90f0c8ee6fbdc575de128d6e6df062216586f637 Author: Alan Garny '' Date: Thu Jul 4 19:26:07 2013 +0200 Revert '"Minor' improvements to our Help and CellMLModelRepository windows following the release of Qt '5.1."' This reverts commit 3d643300434770e21d4b433b0b72391106d77a44. commit 3d643300434770e21d4b433b0b72391106d77a44 Author: Alan Garny '' Date: Thu Jul 4 19:21:31 2013 +0200 Minor improvements to our Help and CellMLModelRepository windows following the release of Qt 5.1. commit 08deffbfdd92cf61b66e7bb4dc692c4e4a1688bb Author: Alan Garny '' Date: Thu Jul 4 19:12:30 2013 +0200 Fixed the issue with some special menu items on OS X '(closes' '#163).' commit ae9b3d9340ea69e565c55211982cc9fd520f9bd7 Author: Alan Garny '' Date: Thu Jul 4 18:50:44 2013 +0200 Implemented a workaround to address an issue that got introduced with Qt 5 on OS X '(closes' '#138).' commit e0150684ab93a4d56a0fbb7dc7061cb865eb421d Merge: 5379c7f84 a60e5bee0 Author: Alan Garny '' Date: Thu Jul 4 17:59:40 2013 +0200 Merge branch ''\''master'\''' into issue31 commit a60e5bee0a5e229a845ca5509d42f91fa8b67526 Author: Alan Garny '' Date: Thu Jul 4 17:57:24 2013 +0200 Updated our main CMakeLists.txt files so that OpenCOR can be properly built on Windows using Qt 5.1. commit 5379c7f84fed602b4e0d6f70d44c868c5c759c6b Merge: 87a7df3fb 1ad18f14c Author: Alan Garny '' Date: Thu Jul 4 17:44:15 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 1ad18f14c22a2cf3ff1cfcba2b477355188ddf13 Author: Alan Garny '' Date: Thu Jul 4 17:36:50 2013 +0200 Updated some of our CMake files so that OpenCOR can be properly built on Linux and OS X using Qt 5.1. commit 3f702d0fdfcbc171b9c12d56898f98808a97f47c Author: Alan Garny '' Date: Thu Jul 4 14:52:07 2013 +0200 Slight update to the developer documentation '(following' the release of Qt '5.1).' commit d9383497642dc457558b06d45bbd30eb95a3cdfd Author: Alan Garny '' Date: Thu Jul 4 13:22:51 2013 +0200 Updated our main CMakeLists.txt file so that we can build OpenCOR on Ubuntu using Qt 5.1. commit 203ae9fc17af1e8077acf06646858ebcae10ace4 Author: Alan Garny '' Date: Thu Jul 4 10:27:26 2013 +0200 Minor improvements to our developer documentation '(following' the release of Qt '5.1).' commit 87a7df3fbc7ee1c4949f4f6a3f58c1f4a0eadf8a Merge: 24383fd58 08109b303 Author: Alan Garny '' Date: Wed Jul 3 19:09:33 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 08109b303d282b6bb024c66be9bccd9b5d3273bc Author: Alan Garny '' Date: Wed Jul 3 19:08:38 2013 +0200 Updated the CMakeLists.txt file for our Windows CLI version of OpenCOR. commit 24383fd58420c75b213271519632bf58bf3a5c0a Merge: b6f1d4faa 49806b61d Author: Alan Garny '' Date: Wed Jul 3 18:50:37 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 49806b61d4378969e1502d2ebf46d6ddf1e3d3e6 Merge: c26fb8cfc 43562c167 Author: Alan Garny '' Date: Wed Jul 3 18:44:18 2013 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit c26fb8cfc0707d291c95fda7dba5bf7aeca59be9 Author: Alan Garny '' Date: Wed Jul 3 18:43:30 2013 +0200 Fixed the QtWebKit memory ''\''leaks'\''' issue '(closes' '#141).' commit 8adbb58579de71f0cb834aceb50888a99209ba5e Author: Alan Garny '' Date: Wed Jul 3 18:17:38 2013 +0200 Updated the developer documentation and our main CMakeLists.txt '(the' Windows bit of 'it)' following the release of Qt 5.1. commit b6f1d4faa73e0de0eec07f7b229aaf332b14903c Merge: 61725f70a 43562c167 Author: Alan Garny '' Date: Tue Jul 2 18:22:18 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 43562c16762accf0dabcea86f5d85a91a3138c60 Author: Alan Garny '' Date: Tue Jul 2 18:21:49 2013 +0200 Revisited our policy on enabling/disabling menus. The idea is that a menu should always be enabled. 'It'\''s' just its items which should be enabled/disabled as needed. commit 61725f70a798d49fa9804d6d8c5e4f2b4ffdb22e Author: Alan Garny '' Date: Tue Jul 2 18:11:35 2013 +0200 Some minor cleaning up. commit 8f15fc20a08e01dabcf500d55eeb1c96023afbb9 Author: Alan Garny '' Date: Tue Jul 2 18:07:56 2013 +0200 Some work on our CellMLModelRepository plugin '(#204).' commit 9cc80676b00ccaa2b69fe677415f3cbbb2b3b5ca Merge: af5513ef8 562b11a62 Author: Alan Garny '' Date: Tue Jul 2 16:26:45 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 562b11a6226299ff975b195e3a9f69c28e027a2d Author: Alan Garny '' Date: Tue Jul 2 16:25:56 2013 +0200 Fixed a small GUI issue with our 'File|Reopen' menu. commit 5551fddf5c5c920c19489eff9542a402577b4eb2 Author: Alan Garny '' Date: Tue Jul 2 16:12:12 2013 +0200 CellMLTools plugin: enable/disable our CellML File Export menu based depending on whether some exports are enabled. commit d60fa424cd4c7de008a8824f2519a27e37944fb7 Author: Alan Garny '' Date: Tue Jul 2 15:56:51 2013 +0200 CellMLTools plugin: enable/disable our CellML File Export menu based depending on whether some exports are enabled. commit af5513ef863581ca9d2141db4d6f6379db9e77c6 Merge: 5041dd535 fa547aba4 Author: Alan Garny '' Date: Mon Jul 1 18:12:03 2013 +0200 Merge branch ''\''master'\''' into issue31 commit fa547aba44b69720d294229da909d13b24e34062 Author: Alan Garny '' Date: Mon Jul 1 18:11:24 2013 +0200 Fixed a small issue that would make a saved CellML file unrecogniseable by any view. commit 5041dd535d4ee04400c44a0f5ed2b9985543af56 Author: Alan Garny '' Date: Fri Jun 28 18:02:40 2013 +0200 Some minor refactoring. commit 32910b49856bb2c8c0428757ec0f2d1e0938ce10 Author: Alan Garny '' Date: Fri Jun 28 17:48:05 2013 +0200 Some work on our CellMLModelRepository plugin '(#204).' commit 3836d9449f2848a2657d3c581b0c567a32f8831a Author: Alan Garny '' Date: Fri Jun 28 16:37:14 2013 +0200 Some work on our CellMLModelRepository plugin '(#204).' commit 49e2d8657c2c664aa867dfc3ac230f2e8a8485b7 Author: Alan Garny '' Date: Fri Jun 28 16:13:11 2013 +0200 Some minor cleaning up. commit 43e483fad20f17f54becddd9d0904172c9987291 Merge: 2e518c632 c1895ea5a Author: Alan Garny '' Date: Fri Jun 28 16:10:15 2013 +0200 Merge branch ''\''master'\''' into issue31 commit c1895ea5a7279a93061a002dbd8a8f32535b239a Author: Alan Garny '' Date: Fri Jun 28 16:09:58 2013 +0200 Some minor cleaning up. commit 2e518c6323913e74cad923ebeda621d6bd7dda7a Author: Alan Garny '' Date: Fri Jun 28 16:05:56 2013 +0200 Some minor cleaning up. commit cf07643ef0e4f169df65f908ea70419b73181a16 Merge: 54e3eb92e 965b88093 Author: Alan Garny '' Date: Fri Jun 28 15:51:59 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 965b88093cddf45f8573166df0cfcc34342ed655 Author: Alan Garny '' Date: Fri Jun 28 15:49:49 2013 +0200 Some minor cleaning up. commit 54e3eb92e580c4d8f8e593c738a3f3a01644d1fc Author: Alan Garny '' Date: Fri Jun 28 15:47:36 2013 +0200 Some work on our CellMLModelRepository plugin '(#204).' commit 61405be261a1d2a41bf57f2be7e22c627137ff99 Merge: 4446521dc 7bc45ed5e Author: Alan Garny '' Date: Fri Jun 28 15:11:36 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 7bc45ed5e633e73059ce82199d921afbf891ad27 Author: Alan Garny '' Date: Fri Jun 28 14:45:53 2013 +0200 Some minor cleaning up. commit a20e0b7fda4ab7ee0093c2c0ccdda2cc2adea093 Author: Alan Garny '' Date: Fri Jun 28 13:28:23 2013 +0200 Some minor cleaning up. commit 4446521dc3237e2ce56159bcc040ec29672a0a95 Author: Alan Garny '' Date: Thu Jun 27 18:18:52 2013 +0200 Some minor work on our CellMLModelRepository plugin '(#204).' commit e6825075be46eff4ceeebab8a6198e82d82d1fcc Merge: 4a0f75012 2ead8f6c1 Author: Alan Garny '' Date: Thu Jun 27 17:25:00 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 2ead8f6c11b12644a5bff22cf653b93838ccaa02 Author: Alan Garny '' Date: Thu Jun 27 17:24:11 2013 +0200 Some minor cleaning up. commit 4a0f7501216b8c76ae567f3ca31d9480f8fc145b Author: Alan Garny '' Date: Thu Jun 27 17:12:35 2013 +0200 Minor cleaning up. commit ad2149b56446904f6eff09e9dd2f2573372560b0 Author: Alan Garny '' Date: Thu Jun 27 17:07:05 2013 +0200 Some minor work on our CellMLModelRepository plugin '(#204).' commit b31bf69746838554be498d5ffc8e93157ec452aa Merge: 20c1aea04 be46464ee Author: Alan Garny '' Date: Wed Jun 26 17:33:04 2013 +0200 Merge branch ''\''master'\''' into issue31 commit be46464ee509990315a6cdfd414358b48b8346df Author: Alan Garny '' Date: Wed Jun 26 17:32:27 2013 +0200 Some minor cleaning up. commit 20c1aea046267d2ef8fd8346bfd34b05c9c542ee Merge: 4378e1b95 d90437b11 Author: Alan Garny '' Date: Wed Jun 26 15:11:07 2013 +0200 Merge branch ''\''master'\''' into issue31 commit d90437b111eda64303efecfc5e1213212bf0699c Author: Alan Garny '' Date: Wed Jun 26 15:10:47 2013 +0200 Some minor cleaning up. commit 4378e1b95a527a7ec0b00aeb68cddf8929f7d6d2 Author: Alan Garny '' Date: Wed Jun 26 15:08:10 2013 +0200 Some minor work on our CellMLModelRepository plugin '(#204).' commit 31567bf78b9238c2132875998841ac4ff7d6b2c5 Merge: 23c12bc80 7e49bc242 Author: Alan Garny '' Date: Wed Jun 26 14:15:51 2013 +0200 Merge branch ''\''master'\''' into issue31 commit 7e49bc242b6e97430950b59878a476a22edce1a2 Author: Alan Garny '' Date: Wed Jun 26 13:30:36 2013 +0200 OS X: can now resume from full scree mode by pressing the Escape key '(closes' '#205).' commit 23c12bc808bbf9ef5a3af43773901049f1791ec9 Author: Alan Garny '' Date: Tue Jun 25 18:16:45 2013 +0200 Make sure that right-clicking on the mouse 'doesn'\''t' start the editing of a property '(#31).' commit c3ae97394bdba8589e384a1636c9b5f5d6ac1d25 Author: Alan Garny '' Date: Tue Jun 25 16:50:11 2013 +0200 Some cleaning up for our forthcoming work on supporting the plotting of simulation results against any model parameter '(#31).' commit 8580db54b2ac9ef675d285542f6082809676e382 Author: Alan Garny '' Date: Tue Jun 25 13:39:05 2013 +0200 Done with improving our CellMLModelRepository plugin '(closes' '#204).' commit 1c4fbbedfaf3dea61bfaf3db1aee0a261a6a69f9 Author: Alan Garny '' Date: Tue Jun 25 13:11:05 2013 +0200 Some work on our CellMLModelRepository plugin '(#204).' commit b3db75bffeb4af6b4eb7f040eea246da89305d9c Author: Alan Garny '' Date: Tue Jun 25 11:05:33 2013 +0200 Fixed our main CMakeLists.txt files. The issue was with CMake Policy '#0020' which got introduced in CMake 2.8.11 and which automatically links a qtmain.lib to a Windows executable. So far, our different solutions ended up working on some platforms and/or command line / Qt Creator combinations and with CMake 2.8.11 or earlier, but never in all possible combinations. Now, 'it'\''s' all 'fine!' commit 3f0bfb042326b0bed30291f6bf0c9051c37e0d71 Author: Alan Garny '' Date: Tue Jun 25 00:43:14 2013 +0200 Updated our two main CMakeLists.txt files. Indeed, on Windows at least, to use 'CMAKE_POLICY(VERSION' '${CMAKE_MINIMUM_REQUIRED_VERSION})' is fine from the command line, but not from within Qt Creator '(!!).' Also, to set the policies in 'INITIALISE_PROJECT()' '(so' that it can also be used for the Windows CLI version of our CMakeLists.txt 'file)' 'doesn'\''t' work either '(!!).' commit a51b6fe246bb6bfba88f3c266d970415ba04fee8 Author: Alan Garny '' Date: Tue Jun 25 00:04:27 2013 +0200 Forgot to remove a debug trace. commit 026a2e2af5f62c8a395af99b173b87ebf134f581 Author: Alan Garny '' Date: Mon Jun 24 23:51:14 2013 +0200 Minor improvement to our main CMakeLists.txt file. commit 466039c9b588af1f0daff10dff8346175327cb63 Author: Alan Garny '' Date: Mon Jun 24 10:27:07 2013 +0200 Slight update to our main CMakeLists.txt file. commit c1947b8337698ddf12b1137b5bd331237bae2a3a Author: Alan Garny '' Date: Sun Jun 23 00:38:41 2013 +0200 Minor improvement to our main CMakeLists.txt files '(to' handle a new CMake policy that got introduced in CMake '2.8.11).' commit 2297e8cf016d53d52bf9ce0fdea2c4fcfa08224a Author: Alan Garny '' Date: Sat Jun 22 13:28:45 2013 +0200 New snapshots. commit cffa841453224b642b10e7c7acb7a46d63199dfd Merge: ff34fd831 a98086ef2 Author: Alan Garny '' Date: Sat Jun 22 04:09:23 2013 -0700 Merge pull request '#203' from opencor/llvm_3.3 Upgrade to LLVM 3.3 '(closes' '#202).' commit a98086ef2efa16bd654ecbe34d7e65fd8493cb43 Author: Alan Garny '' Date: Sat Jun 22 12:30:55 2013 +0200 Generated binaries for LLVM 3.3 and updated our CMakeLists.txt file to make use of them '(#202).' commit 48b26cb37c7a9d2e9d2a722c347a146e17d3df0a Author: Alan Garny '' Date: Sat Jun 22 11:31:47 2013 +0200 Make it possible to build LLVM 3.3 on Linux '(#202).' Some minor cleaning up. commit 03256504809aed124dff2daefa839c620d833ffd Author: Alan Garny '' Date: Sat Jun 22 11:15:27 2013 +0200 Can now build LLVM 3.3 on Windows in debug mode '(#202).' commit 8584ce835ec2f302ab4b39e2ad4b0b0730e8b348 Author: Alan Garny '' Date: Sat Jun 22 10:32:51 2013 +0200 Some minor cleaning up. commit ff34fd8312f56f2e45032c0b479e1313f75d6d6f Author: Alan Garny '' Date: Sat Jun 22 01:19:35 2013 +0200 Minor update to the user documentation. commit b6a8dab892c1512f7e64d4e90ae772a2821eb156 Author: Alan Garny '' Date: Sat Jun 22 01:07:10 2013 +0200 Can now build LLVM 3.3 on Windows '(#202).' commit 629c53332d8fdb4748dc63e8fbd5ab02c5c76e03 Author: Alan Garny '' Date: Fri Jun 21 18:41:35 2013 +0200 Fixed an issue with LLVM itself. commit 93a9cdce841fafea3c99a75e79efe511ac081525 Author: Alan Garny '' Date: Fri Jun 21 17:26:25 2013 +0200 Some minor updates to our user documentation. commit 92ccad99d90416e8e2eca0fecf84885df28f8819 Merge: 62affdcd0 23b746f51 Author: Alan Garny '' Date: Fri Jun 21 16:45:34 2013 +0200 Merge branch ''\''master'\''' into llvm_3.3 commit 23b746f514a97f638a9e9947b392ab046776b64a Author: Alan Garny '' Date: Fri Jun 21 16:45:09 2013 +0200 Some minor cleaning up. commit 62affdcd025e7f1cb86c6a3a087ac92b31fa3312 Merge: 27cface2f 5fbcb392a Author: Alan Garny '' Date: Fri Jun 21 15:08:48 2013 +0200 Merge branch ''\''master'\''' into llvm_3.3 commit 5fbcb392a61c3f0daa7c5c255be2eaeb3996c7dd Author: Alan Garny '' Date: Fri Jun 21 15:02:23 2013 +0200 Slight update to the user documentation. commit 27cface2f644f4b182d729b3ef9ef05d66001343 Merge: 2aba7167f 797a480b5 Author: Alan Garny '' Date: Fri Jun 21 00:53:46 2013 +0200 Merge branch ''\''llvm_3.3'\''' of github.com:opencor/opencor into llvm_3.3 commit 2aba7167f5d83174f21c3ca0a248f61a4cb9db82 Author: Alan Garny '' Date: Fri Jun 21 00:52:50 2013 +0200 Some minor work on getting LLVM 3.3 to build on Windows '(#202).' commit 797a480b59cccf07bc5fffc47271955671f9c65f Author: Alan Garny '' Date: Wed Jun 19 17:52:57 2013 +0200 Some minor cleaning up. commit 17ed3a2c232ab5b0bab4d3b20d5452ffe798476b Author: Alan Garny '' Date: Wed Jun 19 17:03:23 2013 +0200 Slight update to our compiler tests. Also some minor cleaning up. commit 65bb89646de6aaa7c05d46ea469b635649eaa908 Author: Alan Garny '' Date: Wed Jun 19 11:49:57 2013 +0200 $'\020Some' minor cleaning up '(#202).' commit a95b89a1654eca1f5422c4b88df925f82ebc0611 Author: Alan Garny '' Date: Wed Jun 19 10:15:47 2013 +0200 Improved our building of LLVM '(#202).' We can now take advantage of ZLib being present on a 'user'\''s' system. commit a5013b40a77c0c47cc94cfd53f21905be7127c3e Author: Alan Garny '' Date: Tue Jun 18 20:36:57 2013 +0200 Can now build LLVM 3.3 on OS X '(#202).' The compiler tests currently fail with: clang: for the -vectorize-loops option: may only occur zero or one 'times!' commit e4f750a976527029e3e56e57bc231a9c6d0194d7 Author: Alan Garny '' Date: Tue Jun 18 16:20:46 2013 +0200 Upgraded the LLVM distribution from version 3.2 to version 3.3. It 'doesn'\''t' yet build $'though\342\200\246' commit 6452c1b4aa5f271a0b3b8a80552347da536aa641 Author: Alan Garny '' Date: Tue Jun 18 11:32:41 2013 +0200 Updated our various LLVM configuration files '(#202).' commit 6a821d19630cf551aab94385e32c8ad085523607 Author: Alan Garny '' Date: Tue Jun 18 10:52:06 2013 +0200 Slight updates to our LLVM-related documentation. commit 409c58e75bc8983a72ee947781db1f65a12ab51e Author: Alan Garny '' Date: Mon Jun 17 14:28:28 2013 +0200 Some minor cleaning up for our RawCellMLView plugin. commit b1808a8edb952349db82ce0c5a5a300e2bdeb119 Author: Alan Garny '' Date: Mon Jun 17 14:00:00 2013 +0200 Some minor cleaning up. commit 11cbfc1df381f65a5ca391091be02954e0c013e3 Author: Alan Garny '' Date: Mon Jun 17 13:56:56 2013 +0200 Upgraded QScintilla from version 2.7.1 to version 2.7.2. commit 909918477ff269d82d920ae614d17f160cf5d513 Author: Alan Garny '' Date: Sat Jun 15 13:38:43 2013 +0200 Minor update to our user documentation. commit e2d630321ed687326e9aca5868b90d793fa3feb2 Author: Alan Garny '' Date: Sat Jun 15 10:13:55 2013 +0200 Fixed a stupid mistake with the CLI side of our CellMLTools plugin. commit 6cb8f5435deb2340d37ca8f1ab054630de35321b Author: Alan Garny '' Date: Sat Jun 15 08:44:49 2013 +0200 Some minor cleaning up. commit beae96155462d992cb07d99d24a2c3e00f6b9447 Author: Alan Garny '' Date: Sat Jun 15 00:42:49 2013 +0200 Some minor cleaning up. commit 2a59bc4bf9d53a3ab4147eba972e491288ba6e90 Author: Alan Garny '' Date: Fri Jun 14 19:01:31 2013 +0200 Slight improvement to our CLI code. commit 28bf1122b937069ffcccad5617f0f56cc7d754ae Author: Alan Garny '' Date: Fri Jun 14 18:52:34 2013 +0200 Updated the user documentation '(now' that our CLI work is 'done).' Also a minor fix to our CellMLTools plugin description. commit 15de8e7611a5549d6fc7aaea360e3c014b7b0ab2 Author: Alan Garny '' Date: Fri Jun 14 18:32:03 2013 +0200 Minor change to the order of our export command arguments '(#199).' commit 4bbe320dea7bcae150d57ec5c15627b882a22b62 Author: Alan Garny '' Date: Fri Jun 14 18:18:14 2013 +0200 Done with our work on our CLI code '(closes' '#199).' commit da4f42b158a46119e40e3458a91fbd08bbb84add Author: Alan Garny '' Date: Fri Jun 14 14:08:40 2013 +0200 Some work on our CLI code '(#199).' commit e4cf3df7cda3f2a9dd77ff616d98313bd42637ec Author: Alan Garny '' Date: Fri Jun 14 12:54:56 2013 +0200 Slight improvement to some of our Shell scripts. commit d6285c4ae9060ee6b5e88cce8d14f3b15d3cfa39 Author: Alan Garny '' Date: Fri Jun 14 10:10:31 2013 +0200 Some work on our CLI code '(#199).' commit 8f575c72ba8f19213f39644fc657d6aaad7f2a15 Author: Alan Garny '' Date: Fri Jun 14 09:11:56 2013 +0200 Slight update to the developer documentation. commit 43f075a77bb1847379089ed03e5f231fa4dd2786 Author: Alan Garny '' Date: Thu Jun 13 17:00:10 2013 +0200 Some work on our CLI code '(#199).' commit 7c8403b3ad5730e1577fc2e6cced861f544aa4df Author: Alan Garny '' Date: Thu Jun 13 15:49:14 2013 +0200 Some work on our CLI code '(#199).' commit d01528846367fd39882fe76b4cc718d0ab91a778 Author: Alan Garny '' Date: Thu Jun 13 15:47:44 2013 +0200 Some work on our CLI code '(#199).' commit 20578869ecdca03bee8d8f1fc7746df80fb50822 Author: Alan Garny '' Date: Thu Jun 13 13:00:02 2013 +0200 Some work on our CLI code '(#199).' commit afd832d27f5fa2224d297fdd16d04782e8d478e6 Author: Alan Garny '' Date: Thu Jun 13 11:24:26 2013 +0200 Some work on our CLI code '(#199).' commit ae5aaedd45eda161e03390c1abcd733169d845fe Author: Alan Garny '' Date: Thu Jun 13 11:21:34 2013 +0200 Some minor refactoring. commit 79602978f5b5020a2c1f37849a83a6f84460dddf Author: Alan Garny '' Date: Thu Jun 13 11:06:15 2013 +0200 Some minor refactoring. commit 85f59823f24f31339f518ae2208006ed44e381dd Author: Alan Garny '' Date: Thu Jun 13 10:30:06 2013 +0200 Some minor cleaning up. commit 5c89c8edfab727007055a5ac3bddba9131829126 Author: Alan Garny '' Date: Wed Jun 12 19:21:39 2013 +0200 Some minor cleaning up. commit af0f9dda40903ff4de1d53a2311d13f1b53f86d2 Author: Alan Garny '' Date: Wed Jun 12 18:57:27 2013 +0200 Some work on our CLI code '(#199).' commit 846755d79958ddc3124a24c7a8c424523e3dc3f4 Author: Alan Garny '' Date: Wed Jun 12 18:17:41 2013 +0200 Some refactoring for our CLI version '(#199).' commit d1ae2624d2e329f22e25eeaabeb6579c8c935d00 Author: Alan Garny '' Date: Wed Jun 12 17:30:52 2013 +0200 Some minor cleaning up. commit b910f24a3161291405108cda0c1cd6e067c103ac Author: Alan Garny '' Date: Wed Jun 12 16:25:40 2013 +0200 Now zoom in/out around the mouse position '(closes' '#201).' Also various improvements and quite a bit of cleaning up of our plotting widget. commit 63e62f11ecaa0b9acba9469a97df7562aad5b926 Author: Alan Garny '' Date: Wed Jun 12 11:37:21 2013 +0200 Some minor cleaning up. commit 5630683cdbd822a8551a792deacdf0c4bb17d449 Author: Alan Garny '' Date: Tue Jun 11 17:33:40 2013 +0200 Slight improvement to our plotting widget. commit 34ae059786256951ef9878c9ab7bb129561dccea Author: Alan Garny '' Date: Tue Jun 11 17:06:39 2013 +0200 Improvements to our plotting widget. commit 9e49da92034e0a50daa0cf8b679210dfd6ed17dc Author: Alan Garny '' Date: Tue Jun 11 14:50:25 2013 +0200 Minor fix for our plotting widget. commit 1cd53cd5cdcc16cd15a14a7fd4ff53f5d3aa1b4e Author: Alan Garny '' Date: Tue Jun 11 14:20:23 2013 +0200 Minor fix for our plotting widget. commit 0f079afcecb076fd5864d46a6394a1402ed76853 Author: Alan Garny '' Date: Tue Jun 11 14:02:49 2013 +0200 Slight improvements to our plotting widget. commit 255087e259f0ea28f9d941a1e133eeb690a5c461 Author: Alan Garny '' Date: Tue Jun 11 11:43:44 2013 +0200 Slight improvement to our plotting widget. commit 69d7d5d46d6078607fcd0b71544d64e42a037f4a Author: Alan Garny '' Date: Tue Jun 11 11:32:21 2013 +0200 Some minor cleaning up. commit b1f897b542682381a9b0dc220a22e82af6c64904 Author: Alan Garny '' Date: Mon Jun 10 18:26:12 2013 +0200 Some minor cleaning up of our graph plotting widget code. commit f70b25f45e8ee8882174a3749b28475e31ace2bf Author: Alan Garny '' Date: Mon Jun 10 18:25:44 2013 +0200 Addressed a small issue with Windows not handling threads very efficiently. The issue was that a remaining call to 'SingleCellViewWidget::simulationRunning()' would be made after the simulation has finished, thus making the plot non-interactive. So, now, we set the interactive mode based on the actual state of the simulation. commit e4eed8e9a2a6b3d0d1dc5fe83a91b500a24a85d4 Author: Alan Garny '' Date: Mon Jun 10 11:20:26 2013 +0200 Some minor cleaning up. commit cd6e50dce49cb983881e8ac52c55a1ded68ba5f9 Author: Alan Garny '' Date: Mon Jun 10 11:20:16 2013 +0200 Updated the user documentation '(as' a result of '#201).' commit a96a37121593803eba1e532efc818f3a9b8febc9 Author: Alan Garny '' Date: Mon Jun 10 10:19:36 2013 +0200 Some minor cleaning up. commit 93906d7ebef53cd79348ac680f55d1de2533a396 Author: Alan Garny '' Date: Sat Jun 8 18:48:59 2013 +0200 Some minor cleaning up. commit b96607e347c58994baecdff1b3c9f78ec9b7f6e5 Author: Alan Garny '' Date: Fri Jun 7 21:07:48 2013 +0200 Slight update to our LLVM binaries '(since' we slightly modified our core plugin 'interface).' commit a86ea206e338e4653799370b48998304181f1b1e Author: Alan Garny '' Date: Fri Jun 7 17:48:49 2013 +0200 Some minor cleaning up. commit 468a3d71a0cdffd4372fb470b64f706772bc00c3 Author: Alan Garny '' Date: Fri Jun 7 17:37:42 2013 +0200 Some minor cleaning up. commit 6b493c9da632cab493f2a2d66e6f943b3fd87679 Author: Alan Garny '' Date: Fri Jun 7 17:27:09 2013 +0200 Cleaned up the Windows CLI version of OpenCOR commit 48b2fe776de0dae31ebb19a68d43f4cdafe570fd Author: Alan Garny '' Date: Fri Jun 7 15:22:27 2013 +0200 Some minor cleaning up for building LLVM on Linux. commit f604fc0288a496b1b4df5d90f7db95e048772d49 Author: Alan Garny '' Date: Fri Jun 7 15:15:24 2013 +0200 Updated the user documentation to provide some information about the features of the plotting area '(closes' '#200).' commit 33bc8f1a34222afa5ba2a14f22c8e50a43d23f44 Author: Alan Garny '' Date: Fri Jun 7 14:40:10 2013 +0200 Some work on the CLI version of OpenCOR '(#199).' commit b2e333dd0f582dcec1cb033cea74d7d5b3492f22 Author: Alan Garny '' Date: Fri Jun 7 12:56:31 2013 +0200 Improved the switching of file tabs. commit 04d4c3e50993ea1a9d713cbd554d4fd33266d3ee Author: Alan Garny '' Date: Thu Jun 6 16:38:20 2013 +0200 Temporarily disable the preferences action '(since' we are not going to work on it just 'yet).' commit 770377c1d896e80ae2140c7809659c91aea16ca6 Author: Alan Garny '' Date: Thu Jun 6 16:11:01 2013 +0200 Slight update to our third-party libraries page. commit b9b65f61b25a18af4a634fe9e51af6952851d58c Author: Alan Garny '' Date: Thu Jun 6 16:09:27 2013 +0200 Some minor cleaning up. commit 74669f76ffce39d547fd1a28b3d58c748cd2e21f Author: Alan Garny '' Date: Thu Jun 6 00:09:48 2013 +0200 Some minor cleaning up. commit acbb2650fc6b6882995e06addfa5c64c4775081c Author: Alan Garny '' Date: Wed Jun 5 20:58:15 2013 +0200 Minor improvement to our plugins window. commit 8d111fa6a72b4f3355241c8ec0eec976e47638c2 Author: Alan Garny '' Date: Wed Jun 5 20:46:30 2013 +0200 Got rid of the type of a plugin '(General,' Gui or 'Console).' Indeed, a plugin might want to offer both CLI and GUI features. commit 39a9c359ecc5ffefd20fe07390c88776abc3c3ab Author: Alan Garny '' Date: Wed Jun 5 16:35:30 2013 +0200 Some work on supporting CLI features '(#199).' Also some minor cleaning up. commit a6e0b34108db4c4ec3c3ed771475e392a749dd54 Author: Alan Garny '' Date: Tue Jun 4 17:57:35 2013 +0200 Disable the export to CellML 1.1 until we actually get around to implement it. commit 396d8e7b318a1391cb8e6d03fdc0b81f7a157cfe Author: Alan Garny '' Date: Tue Jun 4 17:56:55 2013 +0200 Minor fix '(export' to CellML 1.1 was always 'failing).' commit 607dd24dd0f30a67f34cc5d97f4cd322f7581c71 Author: Alan Garny '' Date: Tue Jun 4 17:46:21 2013 +0200 Updated the user documentation '(closes' '#196).' commit 2336ca96b517f1608cee54f3a04f73aa65a9a5b4 Author: Alan Garny '' Date: Tue Jun 4 15:46:29 2013 +0200 Some minor cleaning up. commit 59c6da1208328fd5563e23ed777282ee4dd317c4 Author: Alan Garny '' Date: Tue Jun 4 15:39:22 2013 +0200 Made the CellML 1.0 export a bit more COR friendly '(i.e.' 'don'\''t' export containment groups and make sure that encapsulation groups are all in one 'group)' '(#196).' commit 1587a339b7375f0e9c06b6e8a3161156adbe53d9 Author: Alan Garny '' Date: Tue Jun 4 10:28:42 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 3f50aa89773dd30ce21a0dd3380c81ed0832e368 Author: Alan Garny '' Date: Mon Jun 3 19:47:29 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 700392fe4fd1cac0d28967d883e0c57d488404f8 Author: Alan Garny '' Date: Mon Jun 3 19:47:16 2013 +0200 Some minor cleaning up. commit 769705e52b43b05d0176729709590d2777f9266c Author: Alan Garny '' Date: Mon Jun 3 18:13:03 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 673d56ecfb4601329d749214060cc8a44523a9e1 Author: Alan Garny '' Date: Mon Jun 3 18:06:51 2013 +0200 Some minor cleaning up. commit de1b29a79a1de7c15be30a5277a6d1f100399d4c Author: Alan Garny '' Date: Mon Jun 3 11:10:59 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 88de953edd4bffc4d7464db77a650ec709be3505 Author: Alan Garny '' Date: Sun Jun 2 19:28:49 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 4ffd82d01c341bedaca564f67e18f080c765298d Author: Alan Garny '' Date: Sun Jun 2 14:29:42 2013 +0200 Some minor cleaning up. commit bcb77ba4dd5170385e91ceeec88b0481ec567ffe Author: Alan Garny '' Date: Sat Jun 1 10:33:28 2013 +0200 Updated jQuery from version 1.10.0 to version 1.10.1, and Qwt from version 6.1.0 RC3 to version 6.1. commit 244582f55923499ac615ff3daadd1772dbc40b1d Author: Alan Garny '' Date: Fri May 31 19:01:52 2013 +0200 Some minor cleaning up. commit 40d02434f482d73afd5a60fa714e57576dfecdae Author: Alan Garny '' Date: Fri May 31 17:32:12 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 576c4efec18ee3cf571022e3ac95efcf596edbd3 Author: Alan Garny '' Date: Fri May 31 16:50:18 2013 +0200 Some minor cleaning up. commit 37fbba01421267c949c77fe718fd897b61c41562 Author: Alan Garny '' Date: Fri May 31 15:24:40 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit 0243fb56bcb66086d88296eaec77a53d848c287e Author: Alan Garny '' Date: Fri May 31 14:20:55 2013 +0200 Some minor cleaning up. commit bb40aa019fff5839a6d943354812faa836db4c2f Author: Alan Garny '' Date: Thu May 30 18:35:51 2013 +0200 Some work towards the export of a CellML file to CellML 1.0 '(#196).' commit cba0d1463aed0da0e893fbb7dd75f3547c62363a Author: Alan Garny '' Date: Thu May 30 17:53:07 2013 +0200 Added some CellML bootstrap header files which we might need. commit fc6d9d9b66d2624ee1f79a7dd7fb007f5e6387a5 Author: Alan Garny '' Date: Thu May 30 11:50:01 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 '(#196' and '#197).' commit be5dcaaa395139a754cb3050534152203e2e47c3 Author: Alan Garny '' Date: Thu May 30 10:58:11 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 '(#196' and '#197).' commit eaa66923c7fcf82b50b2b54ca1df8864e8be1650 Author: Alan Garny '' Date: Wed May 29 22:29:39 2013 +0200 Slight update to our download page '(had' forgotten to update some relative 'links!).' commit 336ae93cbd060d2ba808774103b5f8d9bdd1ea7c Author: Alan Garny '' Date: Wed May 29 22:19:41 2013 +0200 Avoiding a warning on Windows. Also addressed some Windows specific issues related to shared libraries. commit c4f1afe6c2fb3e5fe377fd1b7ef77c894b99f9df Author: Alan Garny '' Date: Wed May 29 18:32:27 2013 +0200 Some work towards the export of a CellML file to CellML 1.0/1.1 '(#196' and '#197).' Also some minor improvement to the way a CellML file is saved. commit 57fd1ab095a349b8d8826a13e1a25a35544dec13 Author: Alan Garny '' Date: Wed May 29 18:31:05 2013 +0200 Minor improvement to saving a file from our central widget. commit d5793c471d7af23252283faf460013aecd4c383b Author: Alan Garny '' Date: Wed May 29 17:49:50 2013 +0200 Some minor cleaning up. commit aa33873548db4a43e2a2fa2f734b052c6a192781 Author: Alan Garny '' Date: Wed May 29 15:09:41 2013 +0200 Stupid 'mistake!' commit 144bf8d52066d434d33439120d5d1edfe44e8a46 Author: Alan Garny '' Date: Wed May 29 15:01:48 2013 +0200 Slight update to our documentation. commit cfb88b6ca23bc97d341a271fe772146b0c2a8ef2 Author: Alan Garny '' Date: Wed May 29 12:58:14 2013 +0200 Some minor cleaning up. commit 16fbdb08330baeb8c56ee5154eca8a6160813350 Author: Alan Garny '' Date: Tue May 28 18:33:13 2013 +0200 Got rid of our depency on LibQxt. commit 22572f2a733237936fb786617d12443c65549331 Author: Alan Garny '' Date: Mon May 27 20:08:30 2013 +0200 Some minor cleaning up. commit 748da3dea7160277b22954e4b3dd8a452896ec3e Author: Alan Garny '' Date: Mon May 27 19:19:35 2013 +0200 New snapshots. commit 98e447348468b4dc69f43b894213a63f58a7b0a4 Author: Alan Garny '' Date: Mon May 27 18:58:07 2013 +0200 Upgraded the CellML API to the snapshot of 22 May 2013. commit 0b45465ba86b12263e6e58ba76223b99b5c464a7 Author: Alan Garny '' Date: Mon May 27 18:16:20 2013 +0200 Some minor cleaning up. commit 1d1ac7938c20a9e14d40d6505a2d92ea7310c6d3 Author: Alan Garny '' Date: Mon May 27 14:00:10 2013 +0200 Improved the way the GUI gets updated when a ''\''new'\''' plugin or file name gets selected commit dcef63724af3097b21b79ca06a58681cad6d7622 Author: Alan Garny '' Date: Mon May 27 13:56:38 2013 +0200 Some slight improvements to our CellMLSupport plugin. commit 55ce081915baee21a206aa72d9bae7056553c446 Author: Alan Garny '' Date: Sun May 26 18:36:57 2013 +0200 Make sure that our CellMLTools menu and actions get enabled/disabled and shown/hidden when appropriate. commit ecd4a67a8a59ce25d22c8625995cc7142dadfcef Author: Alan Garny '' Date: Sun May 26 16:47:01 2013 +0200 Some minor cleaning up. commit c6d39230055cd6edd1cb53f0a70fb08fbe2ad11d Merge: 895ad3696 e707af9d1 Author: Alan Garny '' Date: Sun May 26 11:04:40 2013 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 895ad36966b8460252e7c2bba92bcb40f6851fed Author: Alan Garny '' Date: Sun May 26 11:04:07 2013 +0200 Some minor cleaning up. commit e707af9d18761bd7a98f0ba588eb02a002e0d61d Author: Alan Garny '' Date: Sat May 25 16:30:15 2013 +0200 Updated jQuery from version 1.9.1 to version 1.10.0. commit 958de4f9765d016c3afc1617bb5b23a9eb0feeb9 Author: Alan Garny '' Date: Fri May 24 17:52:27 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit 95e5b9ec8219d37ea85c5582cda1bfaceddd454d Author: Alan Garny '' Date: Fri May 24 17:40:37 2013 +0200 The status tip of a menu 'doesn'\''t' get displayed in the status bar, so no actual need for it. commit 3171f2825dad626c2592ed164c25c46dc7514f01 Author: Alan Garny '' Date: Fri May 24 17:34:40 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit c932a77ef5e2c2feac2b46184a46f06f7d4a02b0 Author: Alan Garny '' Date: Fri May 24 16:38:28 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit 6fc51c9eb8056607296d0bcae0d426fed1ca0ab4 Author: Alan Garny '' Date: Fri May 24 15:27:27 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' Also updated the user documentation. commit b82ff079114c1d320f4787f5d0be5e87b978c4c5 Author: Alan Garny '' Date: Fri May 24 13:20:50 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit 9a8e41ed0ec0bac5861e9fc7938c414440dae138 Author: Alan Garny '' Date: Fri May 24 10:57:12 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit a2f2240ef42366b527c8a72cae650a8835256084 Author: Alan Garny '' Date: Fri May 24 10:44:06 2013 +0200 Working on the GUI side of the CellML conversion '(#196' and '#197).' commit add6ac8761f8096b8f93779e3620c52df37804fa Author: Alan Garny '' Date: Mon May 20 15:54:24 2013 +0200 Minor update to the OpenCOR website. commit b3467d12671f197a827c0a0542b2060674fa603e Author: Alan Garny '' Date: Mon May 20 15:49:19 2013 +0200 Some minor updates to the OpenCOR website. commit 27dc7bfa9ce78e6023233c1e2166e02e5f6b01fa Author: Alan Garny '' Date: Mon May 20 14:25:23 2013 +0200 Some minor improvements to our un/selecting of a category of plugins '(#192).' commit caef1f61bb3e30ef598baf406a33111604ba436a Author: Alan Garny '' Date: Sat May 18 19:38:30 2013 +0200 Done with un/selecting a category of plugins '(closes' '#192).' commit 59f0e7e60f852e6fa33fd1155d451409ff0f8ff6 Author: Alan Garny '' Date: Fri May 17 18:23:16 2013 +0200 Some minor cleaning up. commit b036ed139a7530667f2a84ca6903e9cc77790d84 Author: Alan Garny '' Date: Fri May 17 16:53:06 2013 +0200 Some minor cleaning up. commit a293e0b25c01a7758f25c911b28a4409d98f4867 Author: Alan Garny '' Date: Fri May 17 16:32:52 2013 +0200 Created an empty preferences window '(#193).' Also some minor cleaning up. commit 05d6338f6f8b1229a7c9eefbdbf27fc4c2929bb2 Author: Alan Garny '' Date: Fri May 17 13:52:20 2013 +0200 New snapshots. commit fea72ec386bb267b0122324e40a1d92dfb8e72a3 Author: Alan Garny '' Date: Fri May 17 13:25:56 2013 +0200 Commented out a few CellML API related things which break our Windows build '(and' are not necessary for our use of the CellML 'API).' commit 94cd35887329416725350d10d2bc10ecd4e112f0 Author: Alan Garny '' Date: Thu May 16 20:23:31 2013 +0200 Some minor cleaning up. commit 549d2f8cebbdf286373244d202ef9a795328d7a5 Author: Alan Garny '' Date: Thu May 16 19:24:02 2013 +0200 Upgraded the CellML API from version 1.12 to the latest snapshot available '(6' May '2013).' Also, a slight improvement to the retrieval of binary files. commit bf922bba78fee07813f3d7a64f989f8e6639a553 Author: Alan Garny '' Date: Thu May 16 18:21:25 2013 +0200 Removed from our CellML API plugin all the bits that we 'don'\''t' actually use. One of the reasons is that the latest version of CIS now comes with LLVM statically linked to it and we just 'don'\''t' want that. commit eddcc444b55cf5aac5b021a5f0d564f2e0866587 Author: Alan Garny '' Date: Thu May 16 17:44:01 2013 +0200 Improved our showing/hiding of docked widgets '(closes' '#149).' commit 8d7d8b6c79ddd7be9b62f5883da9bd36c0c53a14 Author: Alan Garny '' Date: Thu May 16 16:05:52 2013 +0200 Some minor cleaning up. commit 2e4393612d419f690c0e8e6e8a4ae7ea3c9a8f76 Author: Alan Garny '' Date: Thu May 16 15:47:40 2013 +0200 Some work on showing/hiding a dock area '(#149).' commit 20a2b9dad57d4b618f20acbf036f50a3aefea6bc Author: Alan Garny '' Date: Tue May 14 15:25:22 2013 +0200 New snapshots. commit 333d109b85a63e83151500288b67b2ec2c3d7027 Author: Alan Garny '' Date: Tue May 14 13:02:49 2013 +0200 Minor cleaning up. commit 15469a5432466805c1c77ffcfc41a525d85f40d1 Author: Alan Garny '' Date: Tue May 14 11:58:23 2013 +0200 Properly distinguish between ''\''proper'\''' and ''\''computed'\''' constants '(closes' '#190).' commit 609c5a0ae393c1999fdb7e4fe89b8087a6203124 Author: Alan Garny '' Date: Mon May 13 19:35:25 2013 +0200 Some minor cleaning up. commit 51ff1dc90c643aa0afaa69de22081774d8ecb59d Author: Alan Garny '' Date: Mon May 13 19:29:03 2013 +0200 Some minor cleaning up. commit 7a69b8536835f5f8b3d16faca722bf1aecc19df4 Author: Alan Garny '' Date: Mon May 13 19:08:51 2013 +0200 SingleCellView plugin: consider non-finite values as being different from initial values '(#189).' commit 820d64e1ac148f66e0d72dc04e3a88bc11ea7a67 Author: Alan Garny '' Date: Mon May 13 16:56:00 2013 +0200 Some minor cleaning up. commit 8864dbe5c282ebaf6329ce4bee7a7c2236599ef6 Author: Alan Garny '' Date: Mon May 13 11:40:19 2013 +0200 New snapshots. commit b5c968492d86f748b62b00b79b28207495cc6f17 Author: Alan Garny '' Date: Mon May 13 11:36:35 2013 +0200 Reverted some changes to some of our CMake files. commit 53d4dbccec7548c61e7fe9b6d8d135d86a2ac7d5 Author: Alan Garny '' Date: Mon May 13 09:32:41 2013 +0200 Some minor cleaning up. commit 702fa936446ca4657a6286b3472e9c055771b21d Author: Alan Garny '' Date: Sun May 12 02:26:42 2013 +0200 Some minor cleaning up. commit 3f82f496e1557b82a3f2b267a4d5b1d7a4c38d52 Author: Alan Garny '' Date: Sun May 12 01:54:11 2013 +0200 Some minor cleaning up in our core and IDA solvers. commit cc18745f03509fd2b57bcd9763100ab10f254ee2 Author: Alan Garny '' Date: Sun May 12 00:42:53 2013 +0200 Some minor cleaning up. commit 6064d549c703ca40a368fc4376df7609fbfff5cb Author: Alan Garny '' Date: Sat May 11 20:04:29 2013 +0200 Quite a bit of refactoring for our solvers. Also fixed an issue with solving DAE models '(#188).' CONDVAR 'wasn'\''t' passed to 'computeVariables(),' meaning that the compilation of a DAE model might fail '(if' the model was to make use of CONDVAR in 'computeVariables()).' commit 4729ab72c891fb1cdcf426175bda85e7bdfc228f Author: Alan Garny '' Date: Sat May 11 08:34:56 2013 +0200 Some minor improvements to some of our CMake files. commit 232300ec60940ae4bd9a4802027a78efa0a5051a Author: Alan Garny '' Date: Fri May 10 12:42:09 2013 +0200 Use the default corner settings for docking areas '(#149).' commit 9a6d38f7b36b06e49c701c408902f4094df98ecb Author: Alan Garny '' Date: Fri May 10 10:09:33 2013 +0200 In the end, we 'don'\''t' want people to use the HTTPS protocol with our GitHub repository. Indeed, according to http://git-scm.com/book/en/Git-on-the-Server-The-Protocols, the HTTPS protocol is simple to set up but it is very inefficient. commit f7b8d99551a943f914a4331e76905436f58bc889 Author: Alan Garny '' Date: Thu May 9 19:42:12 2013 +0200 Slight update to the developer documentation. commit 6b1c1123c1177d47e9b0397a36d7f7966003573a Author: Alan Garny '' Date: Thu May 9 18:58:00 2013 +0200 Slight update to the user documentation '(partly' addresses '#186).' commit 43986ab53e757f7c74c100bcd086a16fdf39546e Author: Alan Garny '' Date: Sat May 4 09:34:49 2013 +0200 Handle the fact that binaries are now hosted on the OpenCOR website '(rather' than the OpenCOR repository 'itself;' '#185).' commit 368b8da70c9009484c3a0bad4718eb15dc5c9115 Author: Alan Garny '' Date: Fri May 3 17:46:13 2013 +0200 Minor update to the developer documentation. commit d693e6b4c1af0ce98b31f7840b760e04f4480434 Author: Alan Garny '' Date: Fri May 3 17:44:55 2013 +0200 Handle the fact that binaries are now hosted on the OpenCOR website '(rather' than the OpenCOR repository 'itself;' '#185).' commit 7fd7e3359e6ef4ff8d0af62b6ad8ec3645af0382 Author: Alan Garny '' Date: Fri May 3 17:40:22 2013 +0200 Improved the make/package scripts '(they' will now stop as soon as a build/packaging error 'occurs).' commit 07b6c5fa466b6b4473ecfadc4aa35e28a4e919b5 Author: Alan Garny '' Date: Tue Apr 30 11:36:08 2013 +0200 Minor update to our user documentation. commit 1734150b91510a066951eca39c8c3ad4143b2b8e Author: Alan Garny '' Date: Mon Apr 29 17:17:27 2013 +0200 An OS X specific minor GUI fix. commit 5831b809addaae58071df41865bcf474a96bbdcf Author: Alan Garny '' Date: Mon Apr 29 16:17:27 2013 +0200 Some minor cleaning up. commit 178c349141b4205cad86aff0c7273e691da84562 Author: Alan Garny '' Date: Mon Apr 29 11:51:38 2013 +0200 On Linux systems, we should apparently include unistd.h to use _SC_PAGESIZE '(closes' '#184).' commit e91d0d5d4a9eb366316fb437399f3cf81c246859 Author: Alan Garny '' Date: Mon Apr 29 10:37:29 2013 +0200 Slight update to our developer documentation. commit 8f564c6915a226794ef273d1b5f5c727445c1bd0 Author: Alan Garny '' Date: Sun Apr 28 02:15:06 2013 +0200 Slight update to the user documentation. commit 17e272a2b3c0c12e7cf50bd0c358bd4d2831b6e1 Author: Alan Garny '' Date: Fri Apr 26 08:05:57 2013 -0400 Added the NSPrincipalClass key to our Info.plist file to enable high DPI on OS X. High DPI is not supported in Qt 5.0.2, but it should be in Qt 5.1. Still, by adding this key, we will be ready. There is another key '(NSHighResolutionCapable),' but 'it'\''s' optional and set to true by default, so we 'don'\''t' need it. For more information, see http://blog.qt.digia.com/blog/2013/04/25/retina-display-support-for-mac- os-ios-and-x11/. commit 2f030a51f7611dc1a3dae9b9439732064fe4592f Author: Alan Garny '' Date: Wed Apr 24 19:16:17 2013 -0500 Updated the user documentation. commit 7e69ade230bf462b0833f423da29c8d8bf0e20f3 Author: Alan Garny '' Date: Wed Apr 24 18:21:40 2013 -0500 Some minor cleaning up. commit 4051dc492304143110024873110a97284e3d02c8 Author: Alan Garny '' Date: Wed Apr 24 14:43:22 2013 -0500 Some minor cleaning up. commit b89dc63daef70bb35f42028d484be998f31976f6 Author: Alan Garny '' Date: Wed Apr 24 14:37:37 2013 -0500 Some minor cleaning up and fixing of a property tool tip in our property editor widget. commit f90582e0422216cb3a9ca58709dacb75dd9dc917 Author: Alan Garny '' Date: Tue Apr 23 17:32:38 2013 -0500 Updated our documentation. commit a45733bd4624ab3cc18a37302c0f8868dd3d42de Author: Alan Garny '' Date: Tue Apr 23 17:18:22 2013 -0500 Slight improvement to our property editor. commit ccafee1038857aed681cd35a2cd559ef75160689 Author: Alan Garny '' Date: Tue Apr 23 17:13:01 2013 -0500 Some minor cleaning up / improvements. commit f8078521aa6332dfddb6bfb56b8973a7eb5dd938 Author: Alan Garny '' Date: Tue Apr 23 16:51:09 2013 -0500 Simulation and solvers properties now have a tool tip similar to that of parameters properties '(closes' '#181).' commit 9a1aeef4585c0131d974fedb0205b3d7c6e526ba Author: Alan Garny '' Date: Tue Apr 23 16:05:54 2013 -0500 Some minor cleaning up. commit fe58abe1c48139872a270d6d4f2db77bbe031902 Author: Alan Garny '' Date: Tue Apr 23 15:56:01 2013 -0500 Done with the internationalisation of our solvers '(closes' '#180).' Quite a bit of cleaning up too. commit 8bcb0747e2a4f46c3d39dc743dd06b2987367513 Author: Alan Garny '' Date: Tue Apr 23 14:50:44 2013 -0500 Some work towards the internationalisation of our solvers '(#180).' commit 2c7ae98c3823616c4e1446a79aeb141e5e37c5e4 Author: Alan Garny '' Date: Tue Apr 23 14:47:53 2013 -0500 Some minor cleaning up. commit 7036ecd093a10d4b730364286d7934930e12b9e4 Author: Alan Garny '' Date: Tue Apr 23 13:55:12 2013 -0500 Keep track of the locale in our global settings so that it can be retrieved from any plugin. commit af11f453dda863759da6956589833d462318994e Author: Alan Garny '' Date: Tue Apr 23 13:09:49 2013 -0500 Minor locale-related fix when retrieving the description of a plugin. commit d1e481803c55b0977cac7b9cf7f58b1669169620 Author: Alan Garny '' Date: Mon Apr 22 19:58:57 2013 -0500 Single cell view plugin: provide a more comprehensive tool tip for model parameters '(closes' '#169).' commit 079650c234f4c4e192b706038539844d33506e7d Author: Alan Garny '' Date: Mon Apr 22 17:29:25 2013 -0500 Some minor refactoring '(renamed' the SingleCellSimulationView plugin to 'SingleCellView).' commit 282dd498ac642b86266f0dcd33659cab6709493d Author: Alan Garny '' Date: Mon Apr 22 16:45:56 2013 -0500 Updated our user documentation. commit e5236a11a8c546fc341b88826817dd39dd561075 Author: Alan Garny '' Date: Mon Apr 22 16:30:42 2013 -0500 Some minor refactoring and cleaning up related to the opening of files from a plugin. commit f70569a46aebc90f3b9cb208c1dc55176863e37e Author: Alan Garny '' Date: Mon Apr 22 12:45:50 2013 -0500 CellML annotation view plugin: can now open an imported file using the context menu '(closes' '#178).' commit 2f0012a00d6479741f456e05b0378fa6965de5a7 Author: Alan Garny '' Date: Mon Apr 22 12:32:18 2013 -0500 Some minor cleaning up. commit 3318acfb040b9f9a7cd0547354413a100af65dd9 Author: Alan Garny '' Date: Mon Apr 22 11:39:04 2013 -0500 Reverted what I thought was some ''\''safe'\''' cleaning up. commit e56dc4db062adf57398ce4d1ef1ebd984f60ecdc Author: Alan Garny '' Date: Mon Apr 22 11:10:02 2013 -0500 Added support for left/right arrow keys support in our tree views '(closes' '#179).' commit b8ba8817412c04fbb23094cc32a960aab934e311 Author: Alan Garny '' Date: Mon Apr 22 10:49:16 2013 -0500 Some minor cleaning up. commit eb3eb056e4e46ff2ddaf05c2882edbc7948521d1 Author: Alan Garny '' Date: Sat Apr 20 13:59:29 2013 -0500 Slight update to the user documentation. commit c63dddf8eac3fa13a3c71dad30a8db07fd726614 Author: Alan Garny '' Date: Fri Apr 19 20:07:17 2013 -0500 SingleCellSimulation plugin: made model parameters more obvious '(closes' '#169).' As in COR, we use a colour coding to distinguish between the different types of model parameters: - Constants '(editable):' filled red circle with a white 'hole;' - Computed constants '(non-editable)' filled red 'circle;' - State '(editable):' filled blue circle with a while 'hole;' - Rate '(non-editable):' filled blue 'circle;' and - Algebraic '(non-editable):' filled green circle. commit 3598ca57fa598bca66fbfb00bf524304a09b392c Author: Alan Garny '' Date: Fri Apr 19 19:36:26 2013 -0500 Some minor cleaning up. commit d290d6a3f20d36e46c84fecd1f4219b41f894e76 Author: Alan Garny '' Date: Fri Apr 19 16:11:57 2013 -0500 Some minor cleaning up. commit e3455d965ded5cf6afe6bbc9e74c7d25d5bb70ab Author: Alan Garny '' Date: Fri Apr 19 15:11:40 2013 -0500 Some minor cleaning up '(removed' our debug 'traces).' commit e46a5f29b570e300133934e60c9aea5cebc934d7 Author: Alan Garny '' Date: Thu Apr 18 16:02:32 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit eab4f3d016844a0067428e2ba60a21eeef7dc703 Author: Alan Garny '' Date: Thu Apr 18 16:01:22 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit 6c533856dc8386bd95e02885939aae64a1cde8c8 Author: Alan Garny '' Date: Thu Apr 18 15:55:17 2013 -0500 Some minor improvement to our simulation worker. Also some cleaning up in the process. commit 0912c071766536b3838762c14aa83eab95b21a91 Author: Alan Garny '' Date: Thu Apr 18 10:53:46 2013 -0500 Some minor cleaning up of our compiler plugin. commit b46eaf5701500552ef8c5c883d77277af88709a7 Author: Alan Garny '' Date: Wed Apr 17 22:49:47 2013 -0500 Minor update to our developer documentation. commit 6528ac334039223d7a78f0a59b8315412a0575d4 Author: Alan Garny '' Date: Wed Apr 17 17:06:45 2013 -0500 Some minor editing. commit b35d4c5312478feefc38e43f4b8a468e911f917b Author: Alan Garny '' Date: Wed Apr 17 15:26:56 2013 -0500 Minor editing of our main 'documentation'\''s' menu. commit 7e48318a86b2dd302e24b292ed42df6356412674 Author: Alan Garny '' Date: Wed Apr 17 14:19:24 2013 -0500 Increased the precision of property values '(closes' '#177).' commit 26111881f4908de1c4b6217706e8d657b4769542 Author: Alan Garny '' Date: Wed Apr 17 13:26:32 2013 -0500 PropertyEditorWidget: fixed the issue that would consider a property value as changed when it 'wasn'\''t' '(closes' '#176).' commit d362a11d631709af63fa6ac3e5d3bd6199509518 Author: Alan Garny '' Date: Wed Apr 17 10:38:00 2013 -0500 Slight update to our user documentation. commit 0e59eec640ec050583ec5152c7a9632f61ba5bd3 Author: Alan Garny '' Date: Tue Apr 16 22:24:46 2013 -0500 Oops, forgot to test things after updating our copy of 'QtSingleApplication!' commit ba93a576e4112474a74ccc70268b2bffd162df2a Author: Alan Garny '' Date: Tue Apr 16 17:03:12 2013 -0500 Updated our copy of QtSingleApplication. commit 6d037dea89a0accd493e7cb4f375601582f31391 Author: Alan Garny '' Date: Tue Apr 16 03:07:52 2013 +0200 Slight update to our user documentation. commit 3acaf31c231047a48690f6fca42fac0e00aeab33 Author: Alan Garny '' Date: Tue Apr 16 03:05:04 2013 +0200 Slight update to our developer documentation following the release of Xcode 4.6.2. Also slightly updated our download page. commit edac69833fa79fe9bba7d222059bca2936703096 Author: Alan Garny '' Date: Tue Apr 16 03:04:20 2013 +0200 Slight improvement to our 'run/pause(/resume)' action. commit 7573052c18644389716721e89feccd02785a0759 Author: Alan Garny '' Date: Tue Apr 16 02:38:54 2013 +0200 '(Hopefully)' fixed an issue which used to crash OpenCOR following two successive '(very)' quick attempts at trying to run a simulation '(closes' '#160).' commit b094335d7c759c0a726d3b03ed1854cba14f6ffb Author: Alan Garny '' Date: Tue Apr 16 00:37:19 2013 +0200 Some minor refactoring. Rather than having two actions for running and pausing a simulation, we now have only one since the same shortcut is to be used for both actions. commit 37326629f01cdbec6a18b05bcc9f9c9e534ef662 Author: Alan Garny '' Date: Mon Apr 15 14:16:51 2013 -0500 Fixed the issue which allowed OpenCOR to remember which parameters to plot after closing and reopening a CellML file '(closes' '#174).' Also some minor cleaning up. commit d9ad69295e6320a3fc3b4254f8dd419fa658ccbd Author: Alan Garny '' Date: Mon Apr 15 19:01:45 2013 +0200 Minor reverting of our user documentation. commit eee33cebfdb4d84835faceb149c531a0dc2be48d Author: Alan Garny '' Date: Mon Apr 15 11:36:00 2013 -0500 Some minor cleaning up. commit c5bd543cfe4045cf62d25920af58876f873957d8 Author: Alan Garny '' Date: Sun Apr 14 21:33:21 2013 -0500 Minor update to our documentation. commit 36828df52fd8fd6fe9966d8dcd22acc495694bf7 Author: Alan Garny '' Date: Sun Apr 14 13:30:28 2013 -0500 Slight update to our download page. commit 5ccaa68f47648788496c3deffa583095b3133673 Author: Alan Garny '' Date: Sun Apr 14 12:32:00 2013 -0500 Minor updates to our documentation. commit f2caea1e40dedbce401569671440a44211e7cb3e Author: Alan Garny '' Date: Sat Apr 13 19:49:13 2013 -0500 Some minor cleaning up. commit 29c5cbf4e65a8b51f203bb12028115523c7a9270 Author: Alan Garny '' Date: Sat Apr 13 09:10:43 2013 -0500 Implemented the midpoint solver '(closes' '#173).' commit 81ee4b073cc9536d906f2ec6e64be09444cd94b6 Author: Alan Garny '' Date: Sat Apr 13 09:09:45 2013 -0500 Some minor cleaning up. commit 6b546138ea9d85324ced84ae2364f20aa98700d2 Author: Alan Garny '' Date: Fri Apr 12 15:22:23 2013 -0500 Some minor cleaning up. commit 09ca2d0802e962601402efda77e513a5672bf0cd Author: Alan Garny '' Date: Fri Apr 12 09:37:38 2013 -0500 Slight update to our common CMake file. commit c8192d7635c0897f2913ae6465ebe45e25d0e857 Author: Alan Garny '' Date: Fri Apr 12 09:30:55 2013 -0500 Minor update to our developer documentation. commit e4a4532c4cda464c7c5d4ea705cb23bfc8f04255 Author: Alan Garny '' Date: Thu Apr 11 11:39:38 2013 -0500 Updated the developer documentation and common CMake file following the release of Qt 5.0.2 and Qt Creator 2.7. commit e37a20c2f7c6db20aadecee0876d57d2e9258896 Author: Alan Garny '' Date: Tue Apr 9 20:25:59 2013 +0200 Some minor cleaning up and refactoring. commit 914726b6fbdf0d0b2f9ff47ff6e2c47a0ffa3cb9 Author: Alan Garny '' Date: Sun Apr 7 14:08:22 2013 +1200 Improved our download page. commit 095496225f83d65389b71a38f707180b78fe4520 Author: Alan Garny '' Date: Sun Apr 7 13:50:14 2013 +1200 New snapshots. commit 9f628a83f2d0e858e09c76d869df94c158e0416a Author: Alan Garny '' Date: Sun Apr 7 13:33:41 2013 +1200 Slight update to our user documentation. commit 8b8928a5bb5c0b567e1b1a210a42422e7e1378e3 Author: Alan Garny '' Date: Sun Apr 7 13:31:53 2013 +1200 Slight update to our user documentation. commit e19f0ecbd1c3071624e9ae9a80915a3ea9f8826a Author: Alan Garny '' Date: Sun Apr 7 13:27:09 2013 +1200 Improved our graph panel '(closes' '#171).' commit 0ff10e1159b5ceaa735bc48df1192e080b90dcf1 Author: Alan Garny '' Date: Fri Apr 5 20:08:05 2013 +1300 Updated our user documentation. commit e8b8e715f1770140358deaeb4b037f7e50a7ba3f Author: Alan Garny '' Date: Fri Apr 5 19:29:04 2013 +1300 Addressed a potential memory access issue in our plugin framework. commit 36160c916ae01d71d909645ddbce6681b5ce551a Author: Alan Garny '' Date: Fri Apr 5 18:45:52 2013 +1300 Some minor cleaning up. commit 90a86a0ad1cbca6b5ede974bdb0b652673965ede Author: Alan Garny '' Date: Fri Apr 5 16:26:46 2013 +1300 Improved our property editor widget. commit 81e4c4210626e8ebd85a117fc5191efea2a650fa Author: Alan Garny '' Date: Fri Apr 5 15:38:52 2013 +1300 Fixed the issue which prevented a simulation tree widget from expanding with single click '(closes' '#170).' commit 60b34a6f88ecb382332a4a604ce026a7d4e9eb01 Author: Alan Garny '' Date: Fri Apr 5 14:07:18 2013 +1300 Some minor cleaning up. commit ec31433e8d39037a9ecde2cd3ae09644faf0929a Author: Alan Garny '' Date: Fri Apr 5 13:58:04 2013 +1300 Some minor cleaning up. commit 1391cc99a7c349583619dbea4cbb6ad26b480cd7 Author: Alan Garny '' Date: Thu Apr 4 18:32:13 2013 +1300 Implemented the Heun solver '(closes' '#168).' commit 401a33748e396034a9ca61646a3066b9a357ce7a Author: Alan Garny '' Date: Thu Apr 4 18:31:19 2013 +1300 Some minor cleaning up. commit 95cbf208e49e19ec24b1fba42ff8aff484d2e429 Author: Alan Garny '' Date: Thu Apr 4 17:05:18 2013 +1300 Updated our documentation. commit e43e6111f4913edb9b2ec689e4b3544ce47357d9 Author: Alan Garny '' Date: Thu Apr 4 16:15:32 2013 +1300 Slight update to our documentation following our work on '#167.' commit c3950f4c497f2eae55408973db9248e89b4aa666 Author: Alan Garny '' Date: Thu Apr 4 15:08:38 2013 +1300 Prevent a property from being cancelled unless explicitly requested by the user '(closes' '#167).' commit f37a8da0e07ce4e6fedaad91fb5cbb0b7682b041 Author: Alan Garny '' Date: Thu Apr 4 10:06:50 2013 +1300 Update our documentation. commit 3141b5a9dec681daf0aac68b168a85995222fa65 Author: Alan Garny '' Date: Wed Apr 3 19:38:38 2013 +1300 Some cleaning up. commit 6ea9a65e678b4f6087c7f554115ace635b93c765 Author: Alan Garny '' Date: Wed Apr 3 19:27:39 2013 +1300 Oops, used the wrong version number on our what is new page. commit 505fd5fc2f5238479936e79e3f958cf7d91b42bc Author: Alan Garny '' Date: Wed Apr 3 19:23:50 2013 +1300 New snapshots. commit 425d6080cf0dcff18d74c1947722464dc1bc1348 Author: Alan Garny '' Date: Wed Apr 3 19:20:08 2013 +1300 Updated the user documentation now that we have two more ODE solvers. commit b46e9e68379330bee99e9dd5ccb32b314ac55f9f Author: Alan Garny '' Date: Wed Apr 3 19:07:52 2013 +1300 Updated the user documentation now that we have two more ODE solvers. commit e5c50729e9fbb29b28e0e70fa4121dcd00191715 Author: Alan Garny '' Date: Wed Apr 3 18:51:17 2013 +1300 Now working towards version 0.2. commit b7feee862453761d5283a9f2e13d34389196840c Author: Alan Garny '' Date: Wed Apr 3 18:35:17 2013 +1300 Implemented the fourth-order Runge-Kutta solver '(closes' '#166).' commit 9797b6ec3f4943917c49b059b933512fb584dcb7 Author: Alan Garny '' Date: Wed Apr 3 18:33:50 2013 +1300 Some minor cleaning up. commit e9c37737ea10832268b9bfd0a9f3e2cf1c44a5d5 Author: Alan Garny '' Date: Wed Apr 3 17:59:07 2013 +1300 Some minor cleaning up. commit 116fa60cb85753857a820e7a12790fd93ed3dfc8 Author: Alan Garny '' Date: Wed Apr 3 17:05:04 2013 +1300 Implemented the second-order Runge-Kutta solver '(closes' '#165).' commit 8976cbdd6fd151ed9e200e060f0efe8224c8b093 Author: Alan Garny '' Date: Wed Apr 3 16:51:55 2013 +1300 Some minor cleaning up. commit 5ed7e098d5ef01ed3bc70f9e7680fe43e43fcd09 Author: Alan Garny '' Date: Wed Apr 3 15:51:13 2013 +1300 Some minor cleaning up. commit 5f7fa1d1f7bece4ce8c37c119b7af9f8b38201d6 Author: Alan Garny '' Date: Mon Apr 1 21:15:58 2013 +0200 Updated our download page now that we have released version 0.1. commit 425a42810e187d37080edac727c118a4d6ff8739 Author: Alan Garny '' Date: Mon Apr 1 20:23:59 2013 +0200 Oops, a minor issue with packaging on Linux. commit 273fb33dc90835e9ebb7b0906f4f35d484fa7622 Author: Alan Garny '' Date: Mon Apr 1 20:04:40 2013 +0200 Version 0.1. commit 655fae86b931bb92cd0a20c5543fcd2b6451dc11 Author: Alan Garny '' Date: Mon Apr 1 20:03:58 2013 +0200 Some editing of our documentation. commit c332a2716a60148c7857706d6ad0edaf800cd2a7 Author: Alan Garny '' Date: Mon Apr 1 19:25:30 2013 +0200 Some editing of our documentation. commit 7612e4e7855180124d2da1f9189cf6d58fbe8d29 Author: Alan Garny '' Date: Mon Apr 1 17:02:30 2013 +0200 Fixed a couple of aesthetic issues with our simulation plugin. commit 75b9920bd5008944b731887cee32604c0ee9430d Author: Alan Garny '' Date: Mon Apr 1 15:13:32 2013 +0200 Some editing of our documentation. commit a0216755d28daccce7eb3694ddba0b27ea0825c5 Author: Alan Garny '' Date: Mon Apr 1 14:42:31 2013 +0200 Some editing of our documentation. commit b8306095dbd27977373e1319ed504d35e96d5775 Author: Alan Garny '' Date: Mon Apr 1 14:20:31 2013 +0200 Some editing of our documentation. commit 5805e2c35aa3e407ef16eb9e2c2501ac5fab3563 Author: Alan Garny '' Date: Mon Apr 1 13:30:24 2013 +0200 Some editing of our documentation. commit 61bd50cd7cba90e143a2ebb49d6a742348531213 Author: Alan Garny '' Date: Mon Apr 1 13:17:23 2013 +0200 Fixed a small issue of the CellML Annotation view 'plugin'\''s' GUI not being properly updated. commit e9cc946b083b6346c45bae240647bfbe8e727a2d Author: Alan Garny '' Date: Mon Apr 1 11:13:09 2013 +0200 Some editing of our documentation. commit b64598452f2dc9f99df47dda3db04289da31464e Author: Alan Garny '' Date: Mon Apr 1 11:11:39 2013 +0200 Some editing of our documentation. commit c20ab49d7fd4b310d4e359a46faf76ec65051b69 Author: Alan Garny '' Date: Mon Apr 1 11:04:21 2013 +0200 Some editing of our documentation. commit 6274fadf4aebe8347a7a1347f481ac17b22d4ef5 Author: Alan Garny '' Date: Mon Apr 1 10:33:29 2013 +0200 Some editing of our documentation. commit fe817766949302afe5889d223fff70c8e080f1ce Author: Alan Garny '' Date: Mon Apr 1 10:28:41 2013 +0200 Some editing of our documentation. commit 53326dcf327fe23b12bc0097c7d84f8b7c179b34 Author: Alan Garny '' Date: Mon Apr 1 10:13:58 2013 +0200 Some editing of our documentation. commit 3b1ffe5ed4e33972f4de6281f7a7d21cec48031f Author: Alan Garny '' Date: Mon Apr 1 10:09:47 2013 +0200 Some editing of our documentation. commit dbd48fb543906e46d9af6829db51f08eb8488fc1 Author: Alan Garny '' Date: Mon Apr 1 20:46:40 2013 +1300 Some editing of our documentation. commit e08c13d1afe298d7257663cd744f0cc322f68fe8 Author: Alan Garny '' Date: Mon Apr 1 18:24:28 2013 +1300 Some editing of our documentation. commit fc6070cd0db5819420cba22747fcd501e046af31 Author: Alan Garny '' Date: Mon Apr 1 17:42:59 2013 +1300 Slight cleaning up in our FileOrganiser plugin. commit 58f1b35b0de13a4fa3ca243a6bc32507238d487e Author: Alan Garny '' Date: Mon Apr 1 17:21:47 2013 +1300 Some editing of our documentation. commit 2af420685b28139a23532aebb60e597e47fc383a Author: Alan Garny '' Date: Mon Apr 1 17:19:48 2013 +1300 Some editing of our documentation. commit 77f1ec72cdad15e2e89110eaadd2e79c40ee2a0c Author: Alan Garny '' Date: Mon Apr 1 17:11:56 2013 +1300 Fixed a small issue with our FileBrowser plugin. commit 0733457acea92f51f4977ff2525fa509b49b761a Author: Alan Garny '' Date: Mon Apr 1 17:03:51 2013 +1300 Some editing of our documentation. commit aa97229eda4bea4453891117899244baca12fa4a Author: Alan Garny '' Date: Mon Apr 1 16:37:27 2013 +1300 Some editing of our documentation. commit d6812d6c26761646705cc9588bafe5ba4eabf269 Author: Alan Garny '' Date: Mon Apr 1 16:28:04 2013 +1300 Some editing of our documentation. commit ae86a330bbcef33eee1563d0a83d20d84919ff30 Author: Alan Garny '' Date: Mon Apr 1 16:14:02 2013 +1300 Oops, had forgotten to update some of our CMake 'files!' commit 22f771edf19703b62a135f8498df24a01311ccd8 Author: Alan Garny '' Date: Mon Apr 1 16:01:30 2013 +1300 Some editing of our documentation. commit afdaf726a43fd01c7b56875efe5f39a616e0dbc3 Author: Alan Garny '' Date: Mon Apr 1 15:44:30 2013 +1300 Some editing of our documentation. commit 20527e445ad69d531a8312b1860cb96ac814537d Author: Alan Garny '' Date: Mon Apr 1 15:43:49 2013 +1300 Slight update to our SUNDIALS plugin. commit a128c259d0249a6c419bab17c2fef82a198ce0b0 Author: Alan Garny '' Date: Mon Apr 1 15:29:31 2013 +1300 Some editing of our documentation. commit 82068652609cbc3edfc9d154347fd88c625889ca Author: Alan Garny '' Date: Mon Apr 1 15:13:15 2013 +1300 Some editing of our documentation. commit 232ffc41febd1e8e24803e5b4cfc5e330a601c3a Author: Alan Garny '' Date: Mon Apr 1 14:39:05 2013 +1300 Some editing of our documentation. commit 1ae07e487a0e525d518d73fd8ab333bf9f7dad6c Author: Alan Garny '' Date: Mon Apr 1 14:35:24 2013 +1300 Some editing of our documentation. commit b68194bbd76ec16933ffe55bad5508791fa40c5c Author: Alan Garny '' Date: Mon Apr 1 14:24:04 2013 +1300 Some editing of our documentation. commit c8ebf209fb343c41f60989a2f25dbbd6c4c4f99c Author: Alan Garny '' Date: Mon Apr 1 14:11:43 2013 +1300 Some editing of our documentation. commit 63150ae932abf3a8fe1d640b48ca44d6290861b2 Author: Alan Garny '' Date: Mon Apr 1 13:52:35 2013 +1300 Some editing of our documentation. commit 6bb77f6ba7fe0e4c8eef89f5e3b91aeb89335c9f Author: Alan Garny '' Date: Mon Apr 1 13:23:59 2013 +1300 Some editing of our documentation. commit bba7fb6cf63da693c8fb7daba90e4d435f93eea6 Author: Alan Garny '' Date: Mon Apr 1 13:00:33 2013 +1300 Some editing of our documentation. commit e12db3228dd4115e321290418315963cf6101ab9 Author: Alan Garny '' Date: Mon Apr 1 12:33:23 2013 +1300 Some editing of our user documentation. commit 2e935de4a4406aa0e774f1ca8421b409aa3bac0f Author: Alan Garny '' Date: Mon Apr 1 12:10:56 2013 +1300 Cleaned up all of our non-binary files, so that they 'don'\''t' have trailing spaces and use a UNIX ending. commit 41c063005600ebd7ef6dc95c4067d1550a6c7024 Author: Alan Garny '' Date: Mon Apr 1 11:28:53 2013 +1300 Some editing of our user documentation. commit d9147ab30ed6623a176f24aa0af28720f64b0101 Author: Alan Garny '' Date: Mon Apr 1 10:36:49 2013 +1300 Some minor editing of our home page. commit f743b4090b5a28cf2761a95ac3f359229cd2505e Author: Alan Garny '' Date: Sun Mar 31 19:44:49 2013 +1300 Some editing of our developer documentation. commit e4f038b916fb65e4ec01ccbcdc802fd7015285f2 Author: Alan Garny '' Date: Sun Mar 31 19:18:51 2013 +1300 Some minor cleaning up. commit e3239028887de58bea51705231922f96aa8159bf Author: Alan Garny '' Date: Sun Mar 31 19:04:40 2013 +1300 Some minor cleaning up. commit 508d6633fdcefab5904f62054303b629229f6a80 Author: Alan Garny '' Date: Sun Mar 31 17:26:35 2013 +1300 Some minor editing of our developer documentation. commit d76fea1c8b5bdabe066db5e9bf7ace91651a48e8 Author: Alan Garny '' Date: Sun Mar 31 17:18:39 2013 +1300 Some minor editing of our developer documentation. commit d6a357b71427676e3eaa85d41bc87a321112e9d8 Author: Alan Garny '' Date: Sun Mar 31 16:59:44 2013 +1300 Some minor editing of our developer documentation. commit 4e2fd750e642f0ed49229ff6c29b5c983a3e6b0a Author: Alan Garny '' Date: Sun Mar 31 16:46:32 2013 +1300 Some minor cleaning up. commit 63e7e685b4e17387282b9ccaabf71415d6b38fd9 Author: Alan Garny '' Date: Sun Mar 31 15:02:02 2013 +1300 Some editing of our documentation for internationalising OpenCOR. Also some minor cleaning up as a result of the updated documentation. commit 38ee31b36ba9787541e86358d63bfa0837d41ec3 Author: Alan Garny '' Date: Sun Mar 31 09:58:16 2013 +1300 Some editing of our developer documentation. commit d5b83e20f8a1bd685b859f650473039c17297a0a Author: Alan Garny '' Date: Sat Mar 30 19:27:52 2013 +1300 Some editing of our documentation. commit 5858409ec44c19d3e678d737427fe6f2fc0b11d2 Author: Alan Garny '' Date: Sat Mar 30 19:16:05 2013 +1300 Some editing of our documentation. commit a450c71da702ad2cf10b9e28496446855b8a3c7c Author: Alan Garny '' Date: Sat Mar 30 19:01:58 2013 +1300 Some editing of our documentation. commit ba1109b11e7140a2227717e5927705687df2e763 Author: Alan Garny '' Date: Sat Mar 30 18:27:47 2013 +1300 Some minor refactoring to respect our coding style. commit 1284cf5f615f77bb508c5d6f5b1be1262024add1 Author: Alan Garny '' Date: Sat Mar 30 18:22:34 2013 +1300 Some minor refactoring to respect our coding style. commit 6ea199903f2f83dcac73e420dab3733b2f8da03f Author: Alan Garny '' Date: Sat Mar 30 18:20:37 2013 +1300 Some editing of our documentation. commit 6712cdcf9314722ec07cf43d4447857615d3e28a Author: Alan Garny '' Date: Sat Mar 30 16:40:45 2013 +1300 Some editing of our documentation. commit 62ec503eb4af2c5e74320befe142574c458dbc85 Author: Alan Garny '' Date: Sat Mar 30 15:56:44 2013 +1300 Some minor editing of our documentation. commit 0201b7625a79c64ac0e8a4c896f364be5acbe2c1 Author: Alan Garny '' Date: Sat Mar 30 15:31:40 2013 +1300 Some minor editing of our documentation. commit d30ecae33557610c61c6e0ac86a828624dfacae8 Author: Alan Garny '' Date: Sat Mar 30 12:39:25 2013 +1300 Minor Windows compilation related issue. commit 0b05ddda594c0168443e666c60c44bdb071cab23 Author: Alan Garny '' Date: Sat Mar 30 12:15:50 2013 +1300 Improved our downloads page. commit 95bab3f5ecc5ef8de2313bea5b49eddd56fd73bb Author: Alan Garny '' Date: Fri Mar 29 18:25:19 2013 +1300 Updated our clean batch file. commit 3d420c62559eb113173893648e8dd979841f47bc Author: Alan Garny '' Date: Fri Mar 29 17:24:12 2013 +1300 Updated our copy of Google Code Prettify. commit 1f3dc2bb9012ef2ca4be88a1c8427a53ed12fba5 Author: Alan Garny '' Date: Fri Mar 29 16:50:17 2013 +1300 Improved our downloads page. commit 72e2d0d40ff88dc6dc542fbd8ed557d1ba06cfb1 Author: Alan Garny '' Date: Fri Mar 29 16:46:19 2013 +1300 Improved our downloads page. commit 3f8c6d8b86708470e68892f77c2dbf6b4ec74fdb Author: Alan Garny '' Date: Fri Mar 29 15:03:35 2013 +1300 Use PHP in our downloads page, so we can retrieve the size of a download file. commit 83127658ff96040e140cf61392cc087156bc6a01 Author: Alan Garny '' Date: Thu Mar 28 20:17:51 2013 +1300 Some minor updates to one of our CSS files. commit 173b19ff9bba0b40a6453d43e169e7c6960e0804 Author: Alan Garny '' Date: Thu Mar 28 20:02:15 2013 +1300 A minor update to our downloads page. commit 3a5792b62dd772ad425142d3ae6229f688958164 Author: Alan Garny '' Date: Thu Mar 28 19:59:58 2013 +1300 Some minor updates to our downloads page. commit a0de082c62685c307fda9d7005ba8e7015a86324 Author: Alan Garny '' Date: Thu Mar 28 19:58:34 2013 +1300 Some minor cleaning up. commit 8efa85c315ca592941da93678b3ca7ef0bbd396f Author: Alan Garny '' Date: Thu Mar 28 19:50:12 2013 +1300 Slight improvement to our conversion of a size to a string. commit 826e193202c4e87da28f993b80ee25ce36b87192 Author: Alan Garny '' Date: Thu Mar 28 15:33:53 2013 +1300 Some minor improvements to our documentation. commit ed18167d0bcccae49e15e9f1c0e0514ddf819518 Author: Alan Garny '' Date: Thu Mar 28 15:10:50 2013 +1300 Some minor improvements to our documentation. commit 7b2c6405b4e81ec80573baf7cc5a23339ad42937 Author: Alan Garny '' Date: Thu Mar 28 13:30:35 2013 +1300 Some minor cleaning up for Version 0.1. commit 67596ba25f17778534c22216c93f8b0b987316ea Author: Alan Garny '' Date: Thu Mar 28 13:27:41 2013 +1300 Some minor cleaning up. commit 7b8f68a138256d69ca8bf57b0bb4f68a648f954b Author: Alan Garny '' Date: Thu Mar 28 13:22:30 2013 +1300 Slight modification to our Google Analytics tracking of clicks. commit 2d761b74d13c34d9f38af86a5c23819fcc4feb75 Author: Alan Garny '' Date: Thu Mar 28 11:54:46 2013 +1300 Some minor cleaning up. commit 6c4a7a9dfce73727ac6e8bd562e85c21a8fda4d3 Author: Alan Garny '' Date: Wed Mar 27 16:39:42 2013 +1300 Fixed a minor issue with the File menu on OS X. commit 7370c4203fe3962f7043c6d2b1b10f81180b2fc9 Author: Alan Garny '' Date: Wed Mar 27 13:55:50 2013 +1300 Fixed an issue with replotting our graph panel. commit 9b83af1c5398b5bc8136d9399ea23e326fb34c41 Author: Alan Garny '' Date: Wed Mar 27 09:42:02 2013 +1300 Some minor cleaning up. commit 1f346425612419a97e4b25fb6d8778e7da08050b Author: Alan Garny '' Date: Wed Mar 27 09:40:26 2013 +1300 Keep track of the reset status of our simulation plugin. commit 493a1e0238721bd3cf85699337a37429b2a1260a Author: Alan Garny '' Date: Wed Mar 27 09:04:37 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. Also cleaned up some of our JavaScript files. commit a832aab192767cfc90037640088b186f2bbb6f42 Author: Alan Garny '' Date: Mon Mar 25 11:49:17 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit b06a851ce144f0d486d3905e27a904fe41e083d6 Author: Alan Garny '' Date: Mon Mar 25 11:33:59 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit 36a887d9a1a147bbb5b2a797ea36b503485e0cf8 Author: Alan Garny '' Date: Mon Mar 25 11:10:35 2013 +1300 Slight modifications to our Google Analytics tracking of clicks. commit ff512d8d0a2550e6fa263f851c7327f16ff1d3c3 Author: Alan Garny '' Date: Mon Mar 25 09:30:49 2013 +1300 Slight modification to our Google Analytics tracking of clicks. commit f404651d6454c975b80814d7e0c83d0b763ac85a Author: Alan Garny '' Date: Sun Mar 24 16:58:57 2013 +1300 Some cleaning up of the file structure and documentation. commit 9226d1a6e38819032a12df5ffd1b5bb92cc4a763 Author: Alan Garny '' Date: Sat Mar 23 13:19:44 2013 +1300 Allow Google Analytics on all pages of our web site. commit 0ecc3edb4acd62416940120e252e7d5097252cea Author: Alan Garny '' Date: Sat Mar 23 13:13:30 2013 +1300 Allow Google Analytics on all pages of our web site. commit a2d941cdd62819560f546886070a6673d1551e71 Author: Alan Garny '' Date: Sat Mar 23 13:05:13 2013 +1300 Allow the tracking of emails, downloads and external links in Google Analytics. commit 7b59892454ea3156e669e64a2bff69bf576ddff3 Author: Alan Garny '' Date: Sat Mar 23 12:34:31 2013 +1300 Some minor cleaning up. commit 95c9947ed2c7df7be85ddb7dc70e9c00bd2e820d Author: Alan Garny '' Date: Sat Mar 23 12:19:30 2013 +1300 Some minor cleaning up. commit f8857d7a11d027fe0bec3c358cb3d8b0320f6f26 Author: Alan Garny '' Date: Fri Mar 22 19:03:59 2013 +1300 Added support for Google Analytics to our main and download web pages. commit 3b32bccc8a7de3f20f8a9edc4eac4b4593335acf Author: Alan Garny '' Date: Fri Mar 22 18:38:58 2013 +1300 Better handling of variables defined in imported components '(#112).' commit eb53d6763379faa39fd6c4bd4dfaa5c57801dee4 Author: Alan Garny '' Date: Fri Mar 22 15:14:09 2013 +1300 Minor cleaning up of our main CMake file. commit 057dcd4f19a74735c923986371c4562821589e02 Author: Alan Garny '' Date: Fri Mar 22 15:11:47 2013 +1300 Minor cleaning up of our main CMake file. commit fbe8fd31990de2fed22e15529b24f4e7dd9ab4bf Author: Alan Garny '' Date: Thu Mar 21 18:35:41 2013 +1300 New snapshots. commit efbf224365ee6644e5b9d3e50c8a3231fbf9e989 Author: Alan Garny '' Date: Thu Mar 21 18:18:56 2013 +1300 Done on reworking our CellML-related code. commit 7e23694c73cd860c28bc09324f52d3e9558a84c5 Author: Alan Garny '' Date: Thu Mar 21 15:20:38 2013 +1300 Some minor cleaning up. commit 014e6817919a64ad6e0f6c2f406a8c9f0bedcbd7 Author: Alan Garny '' Date: Thu Mar 21 14:54:48 2013 +1300 Revert '"Some' minor cleaning 'up."' This reverts commit fbcbd5148ff8da11041f7f93db45846dfe92976e. commit 3107eb762ce36e3f32209257100a20873668222a Author: Alan Garny '' Date: Thu Mar 21 14:51:26 2013 +1300 Wrong casting which worked on Linux, but not on Windows and OS X. commit 3e754bceab1b3065c4d98f497f58d44d82f6118e Author: Alan Garny '' Date: Thu Mar 21 14:38:48 2013 +1300 Some minor cleaning up. commit 203dc5684447591d92bef88b7e7ab8fa1f5a3dc5 Author: Alan Garny '' Date: Thu Mar 21 13:45:24 2013 +1300 Fixed a small issue with showing/hiding menus. commit 373dd5cb318cf99e048e81fe3ce4d3fa12e30149 Author: Alan Garny '' Date: Thu Mar 21 11:37:54 2013 +1300 Forgot to remove a trace. commit 345be41870a838eb984cf04a50dbecac7bece648 Author: Alan Garny '' Date: Thu Mar 21 11:29:54 2013 +1300 Fixed a crash that occurred when trying to run OpenCOR after having manually deleted a plugin. commit d6506a0f65b31b4ad83c0cf54685af18bbcf8d80 Author: Alan Garny '' Date: Thu Mar 21 11:07:06 2013 +1300 Disabled the Raw and Raw CellML views in preparation of version 0.1. commit c2e57520af3ca78b3aba4b5f30ffddf44cf00e0f Author: Alan Garny '' Date: Thu Mar 21 08:16:25 2013 +1300 Disabled the Raw and Raw CellML views in preparation of version 0.1. This means that we also disabled our QScintillaSupport and Viewer plugins since they are not used by other plugins. commit b6427455ab354aba81abdb7e4b88f10411d3bb14 Author: Alan Garny '' Date: Wed Mar 20 20:22:49 2013 +1300 Fixed a silly mistake. commit f94bb3c3d21004ed6153dc855e31104aef345d0d Author: Alan Garny '' Date: Wed Mar 20 19:33:49 2013 +1300 Better handling of a snapshot information which is now retrieved within our CMake script and also used as part of our packaging. commit 32c96e68d19267e77da5eb9fdf88d9496aaf74fd Author: Alan Garny '' Date: Wed Mar 20 18:46:53 2013 +1300 Some work on our CellML-related code. commit 30cd44736f380b318de9204393aac4c62225d6b7 Author: Alan Garny '' Date: Wed Mar 20 17:04:41 2013 +1300 A stupidily HUGE commit regarding our CellML-related code. Note that, at this stage, the CellML annotation plugin 'doesn'\''t' work anymore. We need to do some more work on our new RDF code. OpenCOR 'doesn'\''t' use its own internal representation of a CellML file anymore. It was just going to be too cumbersome in the long run. The only thing we are keeping is the RDF stuff since we did add quite a bit of a layer on top of what the CellML API offers. In the process, we also improved our use of ObjRef. commit dec04c12bebe2f76d94058bf79f2062a0a81acf2 Author: Alan Garny '' Date: Wed Mar 20 16:36:42 2013 +1300 Some fixes/safeguards to our simulation plugin. commit b2c7f7d14ea10390623ca007883d3be56ade2f1a Author: Alan Garny '' Date: Tue Mar 19 13:45:29 2013 +1300 Fixed a small issue with a constant being imported, in which case we cannot use our internal representation of it. commit 1bc4e49e797ff35cc2ba0c4a071a7313a567ed67 Author: Alan Garny '' Date: Tue Mar 19 11:48:06 2013 +1300 Some work on making sure that the zoom factor of our plot is valid. commit afdc1d9ececb5b3ad746f3f25dbb69dc215a7ba1 Author: Alan Garny '' Date: Tue Mar 19 11:20:24 2013 +1300 Some work on making sure that the zoom factor of our plot is valid. Also some minor cleaning up. commit 768abc1b2e47c7af062815de18ef06f978648e54 Author: Alan Garny '' Date: Tue Mar 19 09:33:34 2013 +1300 Some minor cleaning up. commit 68d3c646d18f7045478399596a90aed94c460b0e Author: Alan Garny '' Date: Mon Mar 18 18:04:53 2013 +1300 Addressed an issue with a 'plot'\''s' axes '(#112).' commit b47fc7fb874eb78d949b81f3e25c4c24a9c0836b Author: Alan Garny '' Date: Mon Mar 18 14:54:44 2013 +1300 Fixed a translation. commit 3dd62d4e2a0a030fcb1d37e133e1affe3b2afa33 Author: Alan Garny '' Date: Mon Mar 18 14:49:30 2013 +1300 Updated our CellML icons. commit 3c06e6390305cd4dd3d8ae9379ef01472bba406c Author: Alan Garny '' Date: Mon Mar 18 14:20:11 2013 +1300 Updated the 'developer'\''s' documentation following the release of Xcode 4.6.1. commit 0431ee52e8d71ea0cfc900705875940f44563daf Author: Alan Garny '' Date: Mon Mar 18 14:16:21 2013 +1300 Fixed some translations. commit cf9e3b2546d41c6bbad5bd5cb16611b71c783a76 Author: Alan Garny '' Date: Mon Mar 18 14:15:50 2013 +1300 Can now display the version of a snapshot of OpenCOR '(e.g.' '20130318)' '(#155).' commit b8328c6a2a8fe0aeb7badbc0874fe6d4bd6bb8e4 Author: Alan Garny '' Date: Thu Mar 14 16:43:55 2013 +0100 Some minor refactoring. commit ae93ff843d47a83fa5afc58661cc42de77190d22 Author: Alan Garny '' Date: Thu Mar 14 15:37:11 2013 +0100 New snapshots. commit edc61e10a92b64808337140a0b955ee4d994ee4b Author: Alan Garny '' Date: Thu Mar 14 15:07:35 2013 +0100 Addressed the issue of double clicking on a CellML file '(closes' '#156).' The problem was that the existing CellML 'file(s)' would take time to handle since we were in simulation mode and therefore needed to retrieve its '(their)' runtime. Now, since we would only later on create some connections, including the one that would allow OpenCOR to handle a file opening request from the operating system, this means that the operating system would send us a file opening request, but we 'wouldn'\''t' handle it. So, the fix consisted of creating the connections as early as possible and certainly before opening existing CellML files... commit 5cfca45e1af52ca15e8010589e1fc12e19e088ee Author: Alan Garny '' Date: Thu Mar 14 14:45:20 2013 +0100 Some minor comment editing. commit c18bec822d976be1e57ae7877b5bb6b7ecd85f1e Author: Alan Garny '' Date: Thu Mar 14 14:12:02 2013 +0100 Done with showing/hiding actions based on the selected view '(closes' '#150).' commit 71140f71cc2c0da5f8e510513986477e5645a01a Author: Alan Garny '' Date: Fri Mar 8 14:36:11 2013 +0100 New snapshots. commit 8cc2eecf3d450dea69f448aba3960fe7b85b869a Author: Alan Garny '' Date: Fri Mar 8 14:35:27 2013 +0100 Upgraded to version 4.10.1 of the Oxygen library. commit a09b32f2f2c8b6092b76e992e97a3a6ffe456f9b Author: Alan Garny '' Date: Fri Mar 8 14:06:09 2013 +0100 Improved our plotting widget so that it can now plot anything including non-finite values '(#112).' commit 78abeb13ff06f19adfaa220e340b13d5f3ef2cbf Author: Alan Garny '' Date: Thu Mar 7 18:57:45 2013 +0100 New snapshots. commit 19b2c59d2081ba89e55faa3db471e7baf8263cfa Author: Alan Garny '' Date: Thu Mar 7 18:46:05 2013 +0100 Done with showing/hiding actions based on the selected view '(closes' '#150).' commit 27e1f4688c66b6e1bb54d691eaf7b93e197be3ea Author: Alan Garny '' Date: Thu Mar 7 16:53:49 2013 +0100 Some work on showing/hiding actions based on the selected view '(#150).' Also some minor cleaning up. commit 155b009ce932e88267458b9165c51f19f38e5275 Author: Alan Garny '' Date: Thu Mar 7 15:39:40 2013 +0100 Fixed the issue of the IDA solver not being able to retrieve consistent initial conditions '(closes' '#153).' commit 1f9d41f231c345fabb513b00733b173e8a27b747 Author: Alan Garny '' Date: Thu Mar 7 15:03:52 2013 +0100 Fixed the issue of the IDA solver not being able to retrieve consistent initial conditions '(closes' '#153).' commit 2291984be879c9cfae3868c8a7598d625cd288c0 Author: Alan Garny '' Date: Thu Mar 7 14:51:09 2013 +0100 Fixed the issue with Infinite/NaN axes crashing QwtPlot '(closes' '#152).' commit f01b4dd4a319857a779ae066065fc2ee25ed5611 Author: Alan Garny '' Date: Thu Mar 7 14:40:04 2013 +0100 Temporarily '(really)' removed the marker in our graph panel '(#112).' commit 19b0989cd3a714c19d54ff0444e4e5fba0e1b2d7 Author: Alan Garny '' Date: Thu Mar 7 11:45:38 2013 +0100 Some work on showing/hiding actions based on the selected view '(#150).' commit 355cbb7bbc545db5ce70918e7cc89903c81c5666 Author: Alan Garny '' Date: Thu Mar 7 11:22:22 2013 +0100 Fixed an issue when no appropriate solver is available '(closes' '#151).' Also some minor refactoring. commit c2ba4790e35d2c605b551228515925c9bd1ed089 Author: Alan Garny '' Date: Thu Mar 7 10:46:59 2013 +0100 Some refactoring for our work on showing/hiding actions based on the selected view '(#150).' commit 7feb5d3072cdd50e09d7948e31abf4e3c581b67b Author: Alan Garny '' Date: Thu Mar 7 09:41:26 2013 +0100 Some minor cleaning up. commit 26d3cd558b5804aff3ddbb82a2b72c3b763fee4d Author: Alan Garny '' Date: Wed Mar 6 20:38:12 2013 +0100 Replaced a qobject_cast with a static_cast since the former 'didn'\''t' work on Linux. commit e6c0ab127b1d620d506a9cb86baeaf64d69e7163 Author: Alan Garny '' Date: Wed Mar 6 18:59:27 2013 +0100 Some minor cleaning up. commit e75938adabacffc57c831f50df63cbcacc3a9d04 Author: Alan Garny '' Date: Wed Mar 6 18:48:14 2013 +0100 Minor editing of a comment. commit 9a07fbefe29463426c4b23218dea449e319b2cb7 Author: Alan Garny '' Date: Wed Mar 6 18:27:17 2013 +0100 Reverted a couple of Unicode-related changes which are actually proving necessary on Windows. commit d692006c07d9625752b6cd3486312f84a34b699e Author: Alan Garny '' Date: Wed Mar 6 18:04:43 2013 +0100 Previously enabled more warnings on Linux, resulting in some fixes here and there. commit c2b5fb24ad05c43c04da392af86e3007163ef8b8 Author: Alan Garny '' Date: Wed Mar 6 17:53:57 2013 +0100 Enable more warnings on OS X, resulting in some fixes here and there. commit b13e9cfe5636fad2d8307734a39c81b5a6bfe438 Author: Alan Garny '' Date: Wed Mar 6 17:15:59 2013 +0100 Some minor cleaning up of our common CMake file. commit f45f339298497c4385585c3f8f16d592d15ccfe8 Author: Alan Garny '' Date: Wed Mar 6 16:32:52 2013 +0100 Some minor cleaning up for our LLVM plugin. commit d888c21e77a5e06f34f69096e39d25fda1e85a17 Author: Alan Garny '' Date: Wed Mar 6 15:45:40 2013 +0100 Some minor cleaning up of our CMake files. commit 30d12603a2b702888367db87cf23c0acbd8c9cbd Author: Alan Garny '' Date: Wed Mar 6 10:17:42 2013 +0100 Fixed a couple of issues which caused problems when trying to use an invalid CellML file for simulation. commit a6cbfcd953deaaf06e20e2d96e81b69df0ad4173 Author: Alan Garny '' Date: Wed Mar 6 09:53:31 2013 +0100 Temporarily removed the marker in our graph panel '(#112).' commit aade19e2ce4fda51d1b29cce8dd896c7b95ecff4 Author: Alan Garny '' Date: Wed Mar 6 09:53:09 2013 +0100 Improved the panning of our graph 'panel'\''s' plot '(#112).' commit 3b526002f0877d099dd8ab3cc7ab89015f80e086 Author: Alan Garny '' Date: Tue Mar 5 18:44:04 2013 +0100 New snapshots. commit 83be53cb91cbd41184b4411b0a471afe0dc97e72 Author: Alan Garny '' Date: Tue Mar 5 18:31:20 2013 +0100 Minor fix to avoid some warnings on Linux. commit 32e8f5185af650718223170167b0b432f7bce5c6 Author: Alan Garny '' Date: Tue Mar 5 17:53:00 2013 +0100 Show the coordinates of a region to be zoomed within our graph panel '(#112).' commit ef3c76dba928848e46eef4da11f9718d3b137270 Author: Alan Garny '' Date: Tue Mar 5 16:28:18 2013 +0100 Prevent interaction with our graph 'panel'\''s' plot during a simulation '(#112).' commit 33e4c679287f0a3ac6aaa6d7d7cf354f18eb32a4 Author: Alan Garny '' Date: Tue Mar 5 15:16:22 2013 +0100 Can now show the coordinates of a point within our graph panel '(#112).' commit 8efd53fea3153d79347abfddd9641f8f6d1b67dd Author: Alan Garny '' Date: Tue Mar 5 15:13:20 2013 +0100 Can now show the coordinates of a point within our graph panel '(#112).' commit 615257dfb3310f6b0440c524840dcdd281fc8df9 Author: Alan Garny '' Date: Tue Mar 5 11:33:16 2013 +0100 Upgraded QScintilla to version 2.7.1. commit 374d5b214b87ecdb6737ccd4bbc6c7cefd436e0f Author: Alan Garny '' Date: Tue Mar 5 11:14:24 2013 +0100 Can now zoom a region within our graph panel '(#112).' commit 0d48c64da37fce1f65ec17a6f61b2534bb26d847 Author: Alan Garny '' Date: Mon Mar 4 17:03:09 2013 +0100 Can now pan our graph panel '(#112).' commit 4d1836fce8b5271e11673811ee3e4ad95a555a82 Author: Alan Garny '' Date: Fri Mar 1 14:47:11 2013 +0100 Can now pan our graph panel '(#112).' commit 1f13dc3c9c87f2697359a1c76e77059e95908fd6 Author: Alan Garny '' Date: Fri Mar 1 14:04:11 2013 +0100 Some work on our simulation plugin '(#112).' commit f0870983f2300537a56ead4ec554190cfe958964 Author: Alan Garny '' Date: Fri Mar 1 10:46:48 2013 +0100 Some work on our simulation plugin '(#112).' commit f377b940c56aeff7a0d9b8f4303b6b6e84f0d730 Author: Alan Garny '' Date: Thu Feb 28 20:02:25 2013 +0100 Some work on our simulation plugin '(#112).' commit 9015e684b73e367439cd5158736c3e0853188fb8 Author: Alan Garny '' Date: Thu Feb 28 18:36:51 2013 +0100 Some work on our simulation plugin '(#112).' commit 88e577f09097257ef5273ab1761d3d0ab2feef13 Author: Alan Garny '' Date: Thu Feb 28 18:33:51 2013 +0100 Quite a bit of work on our simulation plugin '(#112).' commit 11c3e2639cd1562f6ed76402e50da40b4bb4f1a1 Author: Alan Garny '' Date: Thu Feb 28 15:23:44 2013 +0100 Fixed a small issue with our plotting widget '(#112).' commit 4a7aa01383ea93ef188f9649e7506619ee75d6b0 Author: Alan Garny '' Date: Thu Feb 28 14:37:58 2013 +0100 Quite a bit of work on our simulation plugin '(#112).' commit f0dcf8b8a83d698570de33ce32e97c10fa0cbd8f Author: Alan Garny '' Date: Thu Feb 28 14:37:31 2013 +0100 Improved our property editor with regards to letting people know when a property has been un/checked. commit 30de1c25b2b907bf618ac2b711f781435ed0637c Author: Alan Garny '' Date: Wed Feb 27 14:07:50 2013 +0100 Quite a bit of work on our simulation plugin '(#112).' commit c712cd362728ec6c9bbedaa1234baf58a2356199 Author: Alan Garny '' Date: Tue Feb 26 17:27:46 2013 +0100 Fixed a small issue with simulations which are too fast to run '(!!)' '(#112).' Also, some minor cleaning up. commit 695b00d21d0127dacf03194104b839de5e47e763 Author: Alan Garny '' Date: Tue Feb 26 16:55:10 2013 +0100 $'\020Some' minor cleaning up and refactoring. commit 511b1efc78c0ae22ef857bf314da0e6ae8dc0778 Author: Alan Garny '' Date: Tue Feb 26 14:09:11 2013 +0100 Prevent interaction with the plot during a simulation '(#112).' commit 0d01f7b43d5a5de469c9c540463f1c3d51eaaec1 Author: Alan Garny '' Date: Tue Feb 26 13:50:09 2013 +0100 Allow zooming in/out individual axes using the mouse '(#112).' commit 1b3eb786f8b3e3d61150e2adb14e7795635eedd1 Author: Alan Garny '' Date: Sun Feb 24 17:19:04 2013 +0100 Some minor cleaning up '(#112).' commit 298c98dd32dc34ff79f7eb1016c59ccefdac8dd0 Author: Alan Garny '' Date: Sun Feb 24 17:17:48 2013 +0100 Some minor refactoring and cleaning up '(#112).' commit 4e499385599dcf1b83eb0449c67b9a20f9b174c2 Author: Alan Garny '' Date: Sun Feb 24 16:52:34 2013 +0100 Some minor refactoring '(#112).' commit e831e54fbd0d1485d70a6bd5b0571776a43e2909 Author: Alan Garny '' Date: Sun Feb 24 16:36:23 2013 +0100 Allow zooming in/out individual axes using the mouse '(#112).' commit ca77f61b79bfd06ffbeb06ce0b06064727803b55 Author: Alan Garny '' Date: Sun Feb 24 14:41:21 2013 +0100 Allow zooming in/out using the mouse wheel '(#112).' commit a47c25e83a089ea25a4223214641c14ac926482e Author: Alan Garny '' Date: Sat Feb 23 16:56:47 2013 +0100 What was supposed to help with the retina display '(on' OS 'X)' actually makes things 'worse!' In our simulation plugin, we have check boxes for the different parameters that make up a model. Now, without the two deleted lines, everything works as expected, but if we have the deleted lines, then the check boxes 'don'\''t' show 'up!?' commit fe21dff143f7b378f1e0ffc0fc67aa7ca3700d56 Author: Alan Garny '' Date: Sat Feb 23 16:40:42 2013 +0100 Some minor OS X related improvements. commit cfefe46b6282abe3ebdc10eb4f25041e45c6d3e5 Author: Alan Garny '' Date: Sat Feb 23 12:51:06 2013 +0100 Some minor cleaning up. commit 5ae68fe1be5a3deb751749d8c9abdf11372d1f2b Author: Alan Garny '' Date: Sat Feb 23 11:58:15 2013 +0100 Fixed a small issue of when we have successfully run a simulation and then want to run a simulation which requires too much memory: we were not resetting our graph panel and that obviously caused OpenCOR to crash '(#112).' commit 379117e1c387186eb5009b4989ae708d21d6aa00 Author: Alan Garny '' Date: Fri Feb 22 18:48:59 2013 +0100 To double click on a plot will copy its contents to the clipboard '(#112).' commit 084546abae986220166098b34b31e4bd2ee0ce22 Author: Alan Garny '' Date: Fri Feb 22 17:37:45 2013 +0100 Some minor cleaning up. commit 203f5a37cb9de3aba2b1ada7fa0a65fd21f4dfb9 Author: Alan Garny '' Date: Fri Feb 22 10:35:36 2013 +0100 Improved our plotting of simulation data '(#112).' commit 2b3404d86ecdb03fe3aa27c6963084ca6fae1a78 Author: Alan Garny '' Date: Fri Feb 22 10:02:22 2013 +0100 Some minor refactoring '(#112).' commit b7ea08a542a465e3f348d6f6660f9e4a6eee1071 Author: Alan Garny '' Date: Thu Feb 21 18:54:06 2013 +0100 Fixed a minor issue with our solvers panel whereby a property with VOI unit 'wouldn'\''t' show the correct tooltip '(#112).' commit 7d2a5eabd6485dbe228a0b29aa708a68e4e0c79e Author: Alan Garny '' Date: Thu Feb 21 18:39:07 2013 +0100 Improved our plotting of simulation data '(#112).' We only plot the new data as opposed to replotting everything everytime. commit 4316dcea8ea56243393140b76df7f994fe2ff2d8 Author: Alan Garny '' Date: Thu Feb 21 18:13:01 2013 +0100 Improved our plotting of simulation data '(#112).' We only plot the new data as opposed to replotting everything everytime. commit 359868fc9b59816368d88d5f94125fc40b9027dd Author: Alan Garny '' Date: Thu Feb 21 15:42:26 2013 +0100 Fixed a small threading issue with our simulation worker '(#112).' commit c810cd493503da8c0d8ad0c72e34cac0bca49343 Author: Alan Garny '' Date: Thu Feb 21 15:10:31 2013 +0100 Some minor refactoring for our graph panel '(#112).' commit 7e26e652ecabf6283c61bed686d3c6f4e39786db Author: Alan Garny '' Date: Thu Feb 21 11:33:32 2013 +0100 Improved our simulation work loop '(#112).' commit 119d3f0d7310ecc26df00ab471fabcd85078002a Author: Alan Garny '' Date: Wed Feb 20 17:34:16 2013 +0100 Done with supporting the resetting of model parameters '(#112).' Also fixed an issue when closing OpenCOR when a simulation '(i.e.' a 'thread)' is still running. commit 8256b224970de8a56f9af0828fbfa86f6492c41d Author: Alan Garny '' Date: Wed Feb 20 14:01:44 2013 +0100 Fixed a memory leak. commit 19d519392cd155a64f3522bc26a6e247128ee515 Author: Alan Garny '' Date: Tue Feb 19 18:06:30 2013 +0100 New snapshots. commit 34af101fe958b4e5fba7ba843ea78521240a11da Author: Alan Garny '' Date: Tue Feb 19 17:59:52 2013 +0100 Some work on supporting the resetting of model parameters '(#112).' commit 4a8fba3d2b29c5e70ffc1770914a1dcf283a2a82 Author: Alan Garny '' Date: Tue Feb 19 16:32:31 2013 +0100 Minor update to our developer documentation. commit cdc6a632a56975750cd03f862c4698d7c0d74d90 Author: Alan Garny '' Date: Tue Feb 19 16:10:36 2013 +0100 Fixed a small problem which prevented us from seeing the progress of another simulation on Windows and Linux. commit f187377019cc0e6c387f709a86f82554aa1632a7 Author: Alan Garny '' Date: Tue Feb 19 15:45:21 2013 +0100 Minor editing of a comment. commit 8bbddc0b8a8e2f846b871b07907e15adacb7f2a2 Author: Alan Garny '' Date: Tue Feb 19 15:26:30 2013 +0100 Slight improvement to our simulation plugin '(the' enabling/disabling of the CSV export was 'improved).' commit f38aed29dc09ebaba497f16a5bbf74b677a710f6 Author: Alan Garny '' Date: Tue Feb 19 14:27:56 2013 +0100 Make sure that several simulations can not only be run at once, but that their progress can be monitored accurately. commit ccc82130bbe9ef1953d67335e909d473c1f2ce39 Author: Alan Garny '' Date: Tue Feb 19 11:07:53 2013 +0100 Make sure that the CSV export action gets properly enabled/disabled. commit 315beea91f9ff417cb91ceb46ca6d5453d95c661 Author: Alan Garny '' Date: Mon Feb 18 18:59:49 2013 +0100 New snapshots. commit 2356a5c0450c6a028e8c01174374e7b277680e17 Author: Alan Garny '' Date: Mon Feb 18 18:25:11 2013 +0100 Greatly improved 'OpenCOR'\''s' responsiveness when it comes to running a simulation '(#112).' commit 3e5adb97ae261f7e8d3c13b91f4cb80e7f01f043 Author: Alan Garny '' Date: Mon Feb 18 15:09:38 2013 +0100 'Oops!' commit 4cf64d615b3d7b9191a7071d11332709a6ca9ae3 Author: Alan Garny '' Date: Mon Feb 18 15:06:29 2013 +0100 Greatly improved 'OpenCOR'\''s' responsiveness when it comes to running a simulation '(#112).' commit f5c89fd467ebba9e554dbd328885112e4f38097e Author: Alan Garny '' Date: Sun Feb 17 19:18:38 2013 +0100 Quite a bit of refactoring of our threaded code '(#112).' commit b689fe5e2ed791a68176057cf58edbfca021a614 Author: Alan Garny '' Date: Sun Feb 17 16:12:32 2013 +0100 Some minor refactoring of our threaded code '(#112).' commit 04d0f8e51d9ff71c4b41a55d6689fd1160e1ed93 Author: Alan Garny '' Date: Sun Feb 17 15:34:41 2013 +0100 Disabled the creation/removal of graph panels, as well as debugging feature '(which,' anyway, 'isn'\''t' 'implemented)' since we will likely not be supporting those in time for the our March release. commit 83639836707ddb2dfbcae1b7052aa8e77f53e894 Author: Alan Garny '' Date: Sat Feb 16 15:25:24 2013 +0100 Improved memory allocation for a simulation. commit 803d162ce9b7ec7e79c7b81bacaba55365786d61 Author: Alan Garny '' Date: Sat Feb 16 14:38:28 2013 +0100 Improved memory allocation for a simulation. commit 5d9e5fd4899535d436488c282774604d67cfb9ac Author: Alan Garny '' Date: Sat Feb 16 14:36:29 2013 +0100 Improved memory allocation for a simulation. commit 3a3660163e168c6743477570a899f7326dbcd965 Author: Alan Garny '' Date: Sat Feb 16 12:28:02 2013 +0100 Allocate results data memory only when actually necessary. commit 55debdef8e6c1d896ba4091567158ce0b02ce0ec Author: Alan Garny '' Date: Sat Feb 16 11:53:48 2013 +0100 Allocate results data memory only when actually necessary. commit c6eb302c8b320d40db4d009d762e2f3e9be093af Author: Alan Garny '' Date: Sat Feb 16 11:06:36 2013 +0100 Some minor improvements. commit 6c7582a134e379ace0646572bb6eba2757fa2313 Author: Alan Garny '' Date: Fri Feb 15 18:52:04 2013 +0100 Improved the way we let people know about the progress of a simulation. commit d7fec9abe5df4c40cc42b2bb840da7b250df985a Author: Alan Garny '' Date: Fri Feb 15 14:11:32 2013 +0100 Some minor cleaning up. commit 992bfcdf77e2195eca3dfa2d73a3ddf6062880f4 Author: Alan Garny '' Date: Fri Feb 15 13:24:10 2013 +0100 Improved the way we let people know about the progress of a simulation. commit 77d02e73e47614f5e8e27a4be4bd4df85dd58b09 Author: Alan Garny '' Date: Thu Feb 14 16:56:30 2013 +0100 Some minor cleaning up. commit f2cfdd8909fb364cc71edee51245289d6b2eecb8 Author: Alan Garny '' Date: Thu Feb 14 16:51:07 2013 +0100 Some minor cleaning up. commit dc19c2c3702e0913e9fff102f28e53019e457680 Author: Alan Garny '' Date: Thu Feb 14 16:48:44 2013 +0100 Some minor improvements to our progress bar. commit b1d65a94269e792497a38e39558318e5472acd6c Author: Alan Garny '' Date: Thu Feb 14 11:55:01 2013 +0100 Some minor cleaning up. commit 9d7815d12c6ca50e1f160e0996296cf05f48cc6d Author: Alan Garny '' Date: Thu Feb 14 11:43:18 2013 +0100 Some minor cleaning up. commit b9d5c08ce483de85a638f60dc3678e49617d7678 Author: Alan Garny '' Date: Thu Feb 14 11:28:38 2013 +0100 Minor update to our developer documentation. commit 2c33df9445e8ed7ff22e128efa624e6abb6265ec Author: Alan Garny '' Date: Thu Feb 14 11:07:36 2013 +0100 Some minor cleaning up. commit 214cb9e0e3364eb0d7a33c919491be53f283a2bf Author: Alan Garny '' Date: Thu Feb 14 11:01:31 2013 +0100 Some minor cleaning up. commit 4cbf3959572fecb1eaabb3c7ac071fcdffc35d16 Author: Alan Garny '' Date: Wed Feb 13 20:35:54 2013 +0100 Edited a Qt-related bug comment. commit fd6cc0c3784e9aa75e0cf4ab18bef1ccd8705d04 Author: Alan Garny '' Date: Wed Feb 13 18:42:07 2013 +0100 New snapshots. commit ff3983d49de8dfd1a1569003fba564a32ce789d6 Author: Alan Garny '' Date: Wed Feb 13 18:39:37 2013 +0100 Done with exporting to CSV '(closes' '#32).' commit b7ac2aba2d9448a7a9fb188d17df0f0d69c569c6 Author: Alan Garny '' Date: Wed Feb 13 18:02:25 2013 +0100 Done with exporting to CSV '(closes' '#32).' commit 85504167061e3ba519d803429179d4e26de3ad26 Author: Alan Garny '' Date: Wed Feb 13 16:52:27 2013 +0100 Some minor cleaning up. commit ebbbb69992b241832a58cd912d224551ced89ef5 Author: Alan Garny '' Date: Wed Feb 13 16:29:35 2013 +0100 Done with being able to run two simulations that require an NLA solver '(closes' '#146).' commit b6598fd55c5a1889d0681a3a80d9e18e5dcdb228 Author: Alan Garny '' Date: Wed Feb 13 15:05:46 2013 +0100 Improved our 'globalInstance()' method. commit 62fdd6ebcb14dfd7fc1c31ae9eca68a3b617eb56 Author: Alan Garny '' Date: Wed Feb 13 13:16:14 2013 +0100 Some work towards being able to run two simulations that require an NLA solver '(#146).' commit adf5d1212da30626a0c4dbb25c81fc72eebcc0ff Author: Alan Garny '' Date: Wed Feb 13 13:15:51 2013 +0100 Some work towards being able to run two simulations that require an NLA solver '(#146).' commit fb29aafb0779eafb6d2244cc7c94d2bba1388788 Author: Alan Garny '' Date: Wed Feb 13 10:03:42 2013 +0100 Slightly improved our settings code. commit bbe7f8645de6b501a19c8d9f6e33b746d922ea1e Author: Alan Garny '' Date: Tue Feb 12 17:39:49 2013 +0100 Some work towards being able to run two simulations that require an NLA solver '(#146).' commit 7fbf024896d74da8481b239cc878525d35506a58 Author: Alan Garny '' Date: Tue Feb 12 17:29:54 2013 +0100 Some minor cleaning up. commit c886ad8e5cb075ec907d0fa50e807233da5cdbfa Author: Alan Garny '' Date: Tue Feb 12 17:13:58 2013 +0100 Some work towards being able to run two simulations that require an NLA solver '(#146).' We still need to handle the case where one or several NLA systems need to be solved to initialise some parameters. commit 1e77d7d295a23aa9932d1dac2c775244b3a27c16 Author: Alan Garny '' Date: Tue Feb 12 15:55:03 2013 +0100 Re-specify an organisation/application name for QSettings. Also some minor cleaning up. We used to have something like 'QSettings(qApp->applicationName())' and it was working fine, except that there were a few cases where it 'wasn'\''t' convenient to get access to qApp. So, we decided to use 'QSettings()' without any argument '(after' all, the documentation says that by default QSettings will use the 'application'\''s' name, if nothing is 'given),' but that clearly 'doesn'\''t' work as expected when using a plugin approach to software development. So, instead, we now use 'QSettings(SettingsApplicationName)' with SettingsApplicationName being a string constant set to '"OpenCOR".' commit aeda1011e9c980f4786708df4f806864feab90f1 Author: Alan Garny '' Date: Tue Feb 12 13:43:04 2013 +0100 Some minor cleaning up. commit 14956af7274ffbe192d97043b4b954aa31f3f6f1 Author: Alan Garny '' Date: Tue Feb 12 13:21:34 2013 +0100 Improved some of our castings. commit 27ed17d45a8f4cd3747dd57f9e72b89a860253bf Author: Alan Garny '' Date: Tue Feb 12 11:40:50 2013 +0100 Some minor cleaning up. commit f657a93dc9b45f061df570bdd99c9b1708621b87 Author: Alan Garny '' Date: Tue Feb 12 11:38:24 2013 +0100 Some minor cleaning up. commit ac2d6e15080c21b52ce570fc6b4ae23ed6126005 Author: Alan Garny '' Date: Tue Feb 12 10:37:49 2013 +0100 Too much cleaning up is not always good on Windows. commit ce19e37e3cc0cdcb157ef08a24b4084659e30bf9 Author: Alan Garny '' Date: Mon Feb 11 17:52:30 2013 +0100 Some minor cleaning up. commit 88dbf15ae8dafbe21494a944b0b3050b0c3a72c0 Author: Alan Garny '' Date: Mon Feb 11 16:35:32 2013 +0100 Some minor cleaning up. commit 21a552cf441a7717248a1240ab13be3c42a9b683 Author: Alan Garny '' Date: Mon Feb 11 16:05:04 2013 +0100 Some minor cleaning up. commit 0945ae0fb987d38990dea653320511267c73d763 Author: Alan Garny '' Date: Mon Feb 11 14:43:27 2013 +0100 Improved the shutting down of OpenCOR '(and,' at the same time, fixed a memory releasing issue in our simulation 'plugin).' commit 10f2cc366333308a2879556b8aeb041ac953a37d Author: Alan Garny '' Date: Mon Feb 11 14:02:06 2013 +0100 Some minor cleaning up '(#112).' commit e0f62e84b6d2915ef84fb32e2bae4fcf76c5b067 Author: Alan Garny '' Date: Mon Feb 11 14:01:08 2013 +0100 Some minor cleaning up '(#112).' commit ff4dda2565d6f94f0e23e33247e01bbbefc7f161 Author: Alan Garny '' Date: Mon Feb 11 11:59:26 2013 +0100 Quite a bit of refactoring '(#112).' commit b91da6e2bc9d6d617fb2b5b45d1ce041fd01fdce Author: Alan Garny '' Date: Mon Feb 11 10:17:09 2013 +0100 Removed the sunken border in our graph panels. commit 60fbf926491f152aa3cb4931d86d8dbab55c09de Author: Alan Garny '' Date: Mon Feb 11 09:42:25 2013 +0100 Some minor cleaning up. commit 1da83e45f5a2d83816d0207730245a1a3a34da9f Author: Alan Garny '' Date: Fri Feb 8 18:20:49 2013 +0100 Check how much memory is availble before running a simulation '(closes' '#147).' commit 0433b3ecc7030fdc8adfece1084cfd08859b66e2 Author: Alan Garny '' Date: Fri Feb 8 17:46:05 2013 +0100 Check how much memory is availble before running a simulation '(closes' '#147).' commit a9f97e7a28feed9baed2f237ad24fdf37caf2057 Author: Alan Garny '' Date: Fri Feb 8 17:38:55 2013 +0100 Some minor refactoring. commit 7c470615ae2ea8e931eca73b056f6af6b17a7b03 Author: Alan Garny '' Date: Fri Feb 8 16:44:52 2013 +0100 Some minor cleaning up. commit b4d97af2d05915a88bb0cbf995b423796ef0b803 Author: Alan Garny '' Date: Fri Feb 8 15:52:05 2013 +0100 Some minor cleaning up. commit 841e0cefcb1e1e51d3e1c542da0de18ed45a81ab Author: Alan Garny '' Date: Fri Feb 8 12:46:18 2013 +0100 Retrieve the available amount of physical memory. commit 1f3c3e5673c083a0e6469466cb9b718c114a0311 Author: Alan Garny '' Date: Fri Feb 8 11:59:44 2013 +0100 Retrieve the available amount of physical memory. commit 281b2b2179c9ea005f342126eab241ffcbadc3d2 Author: Alan Garny '' Date: Thu Feb 7 19:40:20 2013 +0100 Retrieve the total physical memory available. commit ddafbdef16161732d271a84a878d65a576a199e1 Author: Alan Garny '' Date: Thu Feb 7 19:27:19 2013 +0100 Retrieve '(on' Linux and OS X, so 'far)' the total physical memory available. commit 83a42f16693aac7904e20778b230682e2f8b7723 Author: Alan Garny '' Date: Thu Feb 7 18:25:03 2013 +0100 Retrieve '(on' OS X, so 'far)' the total physical memory available. commit c6c878f1f66c8b67fb5c3e42c8b057d240d55a6d Author: Alan Garny '' Date: Thu Feb 7 18:10:20 2013 +0100 Retrieve '(on' OS X, so 'far)' the total physical memory available. commit 6c5ed2c3f3c6cd0c433e38a3d390ece80b05015f Author: Alan Garny '' Date: Thu Feb 7 18:08:11 2013 +0100 Some cleaning up. commit 6686a1f5eecb0d7b34e476bb960d33ebf908da75 Author: Alan Garny '' Date: Thu Feb 7 16:16:19 2013 +0100 Fixed some frustrating 'warnings!' commit c87d01b5a351bedf9ae6e0d0a1db390b50001672 Author: Alan Garny '' Date: Thu Feb 7 15:03:16 2013 +0100 Improved our detection of a 'user'\''s' OS. commit e0ce5d4b2487e519a8fd50128d5bb107b3ce4a77 Author: Alan Garny '' Date: Thu Feb 7 14:13:43 2013 +0100 Done with properly using Q_OS_xxx '(closes' '#148).' Also some minor cleaning up. commit 6b0a93170d8ba24c058a2faf717fc337c538dd7a Author: Alan Garny '' Date: Thu Feb 7 11:25:53 2013 +0100 Some minor cleaning up. commit 76d9eca2a721441ddfcdc9b9037f50ab50277d10 Author: Alan Garny '' Date: Thu Feb 7 10:47:10 2013 +0100 Recognise Windows 8 as the host machine. commit 97f5ce322e7c213e0a9bcce956d257363d2068fa Author: Alan Garny '' Date: Wed Feb 6 21:14:23 2013 +0100 Was missing a couple of Qt DLLs for deployment on Windows. commit 3169fc4a242d4fbb592f9a209855bf69e2626c72 Author: Alan Garny '' Date: Wed Feb 6 20:11:35 2013 +0100 New snapshots. commit 420b880aa290470229c149f8608bee03697aaf80 Author: Alan Garny '' Date: Wed Feb 6 19:47:18 2013 +0100 Some work on exporting simulation results to CSV '(#32).' commit ab1eab03599efaa8efed7e103ed09c96ace6ee7d Author: Alan Garny '' Date: Wed Feb 6 19:24:37 2013 +0100 Some work on exporting simulation results to CSV '(#32).' commit 4b4027f9f288eaccd77462e387f425b8f6fd4e00 Author: Alan Garny '' Date: Wed Feb 6 19:20:54 2013 +0100 Some refactoring. commit de932f0c1017203211ede50231a4a6a073968615 Author: Alan Garny '' Date: Wed Feb 6 17:29:15 2013 +0100 Some work on exporting simulation results to CSV '(#32)' commit 7e23ed3dc2ce73ff4004362b39c08f3b51935ae9 Author: Alan Garny '' Date: Wed Feb 6 15:28:42 2013 +0100 Fixed an issue with our SingleCellSimulation plugin which could crash OpenCOR. commit e149f1ee7e7320af25bd91287f8edb1d70dcc80c Author: Alan Garny '' Date: Wed Feb 6 11:39:18 2013 +0100 Upgraded jQuery from version 1.9.0 to version 1.9.1. commit 437fda3e6be7c8c88a425afd5285d3274b79b4b3 Author: Alan Garny '' Date: Tue Feb 5 19:29:28 2013 +0100 New snapshots. commit 63c61a581f33dee053058653ce6437a9e2478378 Author: Alan Garny '' Date: Tue Feb 5 19:18:27 2013 +0100 Forgot to change the patch version of Qt which we use. commit ee83b425cb467ebcaf3739cba4929ed704deba9a Author: Alan Garny '' Date: Tue Feb 5 19:03:11 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 913b6cdcb3cbd365dc92cbaedf461c4e87a86b39 Author: Alan Garny '' Date: Tue Feb 5 18:48:03 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit da79408570e275e82ce724a2b8fd947f2ee52823 Author: Alan Garny '' Date: Tue Feb 5 18:20:51 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 033619f1c006cacafc04f571fd17ee8f938b8bb4 Author: Alan Garny '' Date: Tue Feb 5 18:01:02 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 7d4d82670603846c0d616b633d3a47715a44a4c2 Author: Alan Garny '' Date: Tue Feb 5 17:07:19 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit b7fdf3459aee1c5b23fa5be0f3a948027040b671 Author: Alan Garny '' Date: Tue Feb 5 17:01:29 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit e2d52d056c96ddfaac44ca8535f79695502436b5 Author: Alan Garny '' Date: Tue Feb 5 16:12:35 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 4ebbc209b6cc86c05a60a867c2a70505db99d535 Author: Alan Garny '' Date: Tue Feb 5 16:12:31 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 5a095612d2f3773a0aae3343fa5e2d425fbd3dc4 Author: Alan Garny '' Date: Tue Feb 5 15:45:54 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit f3962ebd3f7520beb6c65967a9f031e7bfe22db6 Author: Alan Garny '' Date: Tue Feb 5 15:39:22 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit b760883e140cc92c57d6eac9edcf78b54b86b22e Author: Alan Garny '' Date: Tue Feb 5 15:36:10 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit f6bb35283604d0deaa1c88bc458d770ada7efcbb Author: Alan Garny '' Date: Tue Feb 5 15:18:20 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 97b19709cdfcb6a62bff678bd48c920760b7d959 Author: Alan Garny '' Date: Tue Feb 5 14:30:15 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 4f72ff8a3223a3cc2d88861fb6f08245dc3c4ca4 Author: Alan Garny '' Date: Tue Feb 5 13:54:21 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit e78df044652b71695518abeb3999a41253e897ad Author: Alan Garny '' Date: Mon Feb 4 21:41:16 2013 +0100 Removed the focus from our delay wheel in our SingleCellSimulationView plugin. commit b3d6af8639eaf3efed5479989fc9f19cb512d5cd Author: Alan Garny '' Date: Mon Feb 4 19:27:54 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit d3e90dab102d676215cac6fb315baf870b9a23fe Author: Alan Garny '' Date: Mon Feb 4 18:46:23 2013 +0100 Some minor cleaning up. commit 8c8c93ebdec30847b681e992475e91d7292b683c Author: Alan Garny '' Date: Mon Feb 4 18:44:46 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 58d57492a01205dbbcb15d2edb8e620916b95875 Author: Alan Garny '' Date: Mon Feb 4 18:36:34 2013 +0100 Some minor cleaning up. commit aeb56fdca661ec181ab7ed54c2b431947abe908b Author: Alan Garny '' Date: Mon Feb 4 18:24:53 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit b79ba3efe4e61e42d54f8e40e21078fc37c896a0 Author: Alan Garny '' Date: Mon Feb 4 17:54:24 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit e8781f80a35eb3208f9571356072a71c887ad2d1 Author: Alan Garny '' Date: Mon Feb 4 17:46:51 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit b1777208c442e44a832a0d4cbb57faf141689038 Author: Alan Garny '' Date: Mon Feb 4 17:35:21 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' Also some minor refactoring. commit 29899b6e6e5df2edd648474f42a8a06d7eca876f Author: Alan Garny '' Date: Mon Feb 4 16:57:32 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' Also some minor cleaning up. commit c69f4ed37559f68f44ad36ae7194f155554d12f6 Author: Alan Garny '' Date: Mon Feb 4 15:17:26 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 2114bacecf74c22a7b9022d8100959b7734fdee4 Author: Alan Garny '' Date: Mon Feb 4 14:12:11 2013 +0100 Retrieve the 'solvers'\''' properties '(#112).' Also some minor refactoring and cleaning up. commit a6d75690bcc85d81ddc31de5be680a7e37d93a87 Author: Alan Garny '' Date: Mon Feb 4 13:01:33 2013 +0100 Some minor cleaning up. commit 2de03657e7a74ef8288f4c259fd67b83f9e71159 Author: Alan Garny '' Date: Mon Feb 4 13:01:08 2013 +0100 Some minor cleaning up. commit d16cd70754e3641bf71a31e52cd602cd2bb5d175 Author: Alan Garny '' Date: Mon Feb 4 11:27:29 2013 +0100 Retrieve the 'solvers'\''' name '(#112).' Also some minor refactoring and cleaning up. commit 550d08f3d20b05f5547a3e2848f400a7bfbd09d7 Author: Alan Garny '' Date: Mon Feb 4 10:43:37 2013 +0100 Some work on our SingleCellSimulationView plugin '(#112).' commit 356416a98f480bcb1d6fd94820709a30ba13bb00 Author: Alan Garny '' Date: Mon Feb 4 10:34:33 2013 +0100 Temporarily removed the Traces frame '(#112).' commit 9e857dd3ef11a6da80c483030124f927f3694f8b Author: Alan Garny '' Date: Mon Feb 4 10:11:09 2013 +0100 Make the model parameters checkable '(to' be able to plot 'them;' '#112).' commit df439c538359909c0036dc273f8370ebbebc6539 Author: Alan Garny '' Date: Sat Feb 2 18:07:38 2013 +0100 Done with allowing categories to be selected in the plugins window '(closes' '#145).' commit 6dadf05f065e59060e4edada32716b751c818228 Author: Alan Garny '' Date: Sat Feb 2 12:27:40 2013 +0100 Done with allowing categories '(i.e.' Units, Components, 'etc.)' to be selected in the CellMLAnnotationView plugin '(closes' '#144).' commit 09a36f07a14f9be145663a764955ff9f221c1202 Author: Alan Garny '' Date: Sat Feb 2 10:00:32 2013 +0100 Minor update to our developer documentation. commit 33a04527f329feee61885b9acd3c722fec806258 Author: Alan Garny '' Date: Fri Feb 1 19:29:35 2013 +0100 Improved PropertyEditorWidget so that even sections can now be selected '(making' it easier to collapse/expand a 'section).' commit 70de7937bed905febf2345a2a038be360d881598 Author: Alan Garny '' Date: Fri Feb 1 19:21:24 2013 +0100 Some minor cleaning up of PropertyEditorWidget. commit 9db613652179ffdaf6d9a75e48bc77cf96e2f562 Author: Alan Garny '' Date: Fri Feb 1 19:11:42 2013 +0100 Some minor cleaning up '(#112).' commit ce5080ac23c6e79b8163191dfa6cf35225107f2f Author: Alan Garny '' Date: Fri Feb 1 15:57:18 2013 +0100 Fixed a small issue which crashed OpenCOR because of a property editor not closing. commit 9765000f474f0f4fa750301639c748ae9fab9f52 Author: Alan Garny '' Date: Fri Feb 1 15:56:25 2013 +0100 Added a comment about a limitation in the CellML API. commit 1f089acd967fdd0b18a527a6ce1fe53860747e4f Author: Alan Garny '' Date: Fri Feb 1 14:58:19 2013 +0100 Distinguish between ''\''proper'\''' constants and ''\''computed'\''' constants '(#112).' Also some minor cleaning up. This is very important in case the user modifies a model parameter which requires recomputing constants. The CellML API 'doesn'\''t' distinguish between ''\''proper'\''' and ''\''computed'\''' constants which means that we 'couldn'\''t' recompute ''\''computed'\''' constants without resetting all the ''\''proper'\''' constants too '(something' we 'don'\''t' want to do since we want to allow the user to modify 'those!).' Ideally, the CellML API would distinguish the two of them, but no time to wait for it so we do it ourselves. commit 9a66c840570a328927a751e2d7fe8556af40a5bd Author: Alan Garny '' Date: Fri Feb 1 11:28:07 2013 +0100 Keep track of user changes to parameter values '(#112).' Also some minor cleaning up. commit 66d7fcbd93ebbe314666007c522a397a39820fef Author: Alan Garny '' Date: Fri Feb 1 11:10:29 2013 +0100 Some refactoring '(#112).' commit 777b62446c4d5a9fdf9a97b45a46921a97ce97a4 Author: Alan Garny '' Date: Fri Feb 1 10:14:46 2013 +0100 Some work towards keeping track of solvers, traces and parameters property values '(#112).' commit 9e2278f531fd1cb0d59efcc82cf60e920965c6f5 Author: Alan Garny '' Date: Thu Jan 31 20:24:38 2013 +0100 Some work towards addressing the crash on OS X when trying to save a file under a new name '(#110).' commit 7c16ed676c847202cf5a782db3031192301004c4 Author: Alan Garny '' Date: Thu Jan 31 17:42:18 2013 +0100 Qt 5.0.1 and Qt Creator 2.6.2 have just been released, so updated our developer documentation. commit 2ba3cadede0fb67a2d230d56f97017c301a36ac4 Author: Alan Garny '' Date: Thu Jan 31 16:47:24 2013 +0100 Now keep track of simulation property values '(#112).' Also some refactoring. commit 54ce37366ba97122bcbbf603cf4ec5a81693ca4c Author: Alan Garny '' Date: Thu Jan 31 09:45:36 2013 +0100 Minor updates to 'OpenCOR'\''s' website. commit 0c3c30f0c5441435edd12e4182accdb9735196d2 Author: Alan Garny '' Date: Wed Jan 30 22:26:34 2013 +0100 Some minor improvement to our user documentation. commit 8e206f451b9fc5016fcbcfa534fd711a735e5465 Author: Alan Garny '' Date: Wed Jan 30 19:30:14 2013 +0100 Some minor improvement to our user documentation. commit 888d3f72c0b5d4519debc8726af8d349b2ee4eb7 Author: Alan Garny '' Date: Wed Jan 30 18:43:30 2013 +0100 Some minor cleaning up. commit 7ac58b2259cce5a6445d2d2f1edacf236fedfd19 Author: Alan Garny '' Date: Wed Jan 30 17:09:22 2013 +0100 Found the reason of the conflict between the system and OpenCOR versions of LLVM '(closes' '#136).' There is no solution as such since 'it'\''s' an issue with VirtualBox and its lack of proper 3D acceleration handling, but at least there is a workaround for the user to get OpenCOR to work as expected, hence updated the user documentation. commit a9e31de5787c973086413c5da589984ef5cf5a14 Author: Alan Garny '' Date: Wed Jan 30 11:51:29 2013 +0100 Minor update to the developer documentation. commit b60f4baa0d5c4c22a8608bbcea163c97411241c2 Author: Alan Garny '' Date: Tue Jan 29 19:00:27 2013 +0100 New snapshots. commit 20ec9e204da112da62482fb5fda74e41a5afa6d4 Author: Alan Garny '' Date: Tue Jan 29 18:56:24 2013 +0100 Fixed a building issue on OS X. commit b9d86a670e0d12a38c8ba7ace85c49cf1605ae15 Author: Alan Garny '' Date: Tue Jan 29 18:39:59 2013 +0100 Fixed a building issue on Windows and Linux. commit e84c6cf193adfb60e1793e2cb7ea830acd39684c Author: Alan Garny '' Date: Tue Jan 29 18:18:30 2013 +0100 Addressed a small issue with debug information always being generated. Also fixed an issue with QtTest/QtTest generating some warnings. commit dcb8efbbb6dc989f6b96b3ddb0d82086e2bb245d Author: Alan Garny '' Date: Tue Jan 29 17:36:03 2013 +0100 Some minor cleaning up '(as' a result of Xcode 4.6 being better than Xcode '4.5).' commit fa08535b6bd87059598e539776cf39aa2a0dbb69 Author: Alan Garny '' Date: Tue Jan 29 17:07:54 2013 +0100 Done with retrieving all the model parameters '(closes' '#142).' commit a9946dbca3f40fd0f8e8b9252176ab5a13f1be7d Author: Alan Garny '' Date: Tue Jan 29 14:51:07 2013 +0100 Some minor cleaning up '(#142).' commit 1cd68ff61879e3c7affeb61167f694f3911ff4ed Author: Alan Garny '' Date: Tue Jan 29 14:38:39 2013 +0100 Done with addressing the the reopening a CellML file '(closes' '#143).' commit 4db73a99e3236f6171c4a85565f0499d898c843e Author: Alan Garny '' Date: Tue Jan 29 13:04:32 2013 +0100 Slight update to the developer documentation. commit 809aecf80c8c3cd3840633e65b0f0ad34240eb57 Author: Alan Garny '' Date: Tue Jan 29 11:44:13 2013 +0100 Some work on addressing the the reopening a CellML file '(#143).' commit a5c05194797ed14787ca6e878d892e0c7b727363 Author: Alan Garny '' Date: Tue Jan 29 10:41:02 2013 +0100 Some minor refactoring '(#143).' commit 82205671915d3a27d6292bec283d14e8a397802e Author: Alan Garny '' Date: Mon Jan 28 19:33:53 2013 +0100 New snapshots. commit b11635ae1c6471d23771eab6dc377436ac82752d Author: Alan Garny '' Date: Mon Jan 28 19:06:10 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 9e84254bd6766c3aa16a38126188cbdd8bf5cb84 Author: Alan Garny '' Date: Mon Jan 28 18:10:23 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit b7e8e60db514ae1b7706d9bc452114f13bb11004 Author: Alan Garny '' Date: Mon Jan 28 17:38:07 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit a84f873d65a9c645c2eb33b694f5cf24fb3a27a9 Author: Alan Garny '' Date: Mon Jan 28 17:28:55 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 1db74fee54b325c17e3931e2bdf5a603aab45b3a Author: Alan Garny '' Date: Mon Jan 28 14:57:34 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit afefe2d2cc60b699aac53e69f4da48d95ee30f9f Author: Alan Garny '' Date: Mon Jan 28 14:34:56 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit aad8af999f3a52bccc09a3e5231b67e9cd50f4d7 Author: Alan Garny '' Date: Sat Jan 26 13:18:40 2013 +0100 Upgraded Qwt from version 6.1.0 RC2 to version 6.1.0 RC3. commit aef81e33ef9698c21a4f5a87f4889f5674cdd773 Author: Alan Garny '' Date: Sat Jan 26 12:36:15 2013 +0100 Some refactoring which makes the use of runtime model parameters more generic '(#142).' commit ae2c1372c26b26e731624d97735b63b18da9409e Author: Alan Garny '' Date: Sat Jan 26 01:18:15 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 2de85806fdc05a579dbb68f241a3effeb184c720 Author: Alan Garny '' Date: Sat Jan 26 00:44:48 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit a69459ebc05a03ce474124d7893e7bdd88e603c1 Author: Alan Garny '' Date: Fri Jan 25 18:38:07 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 9b144a3ac128390d0fe96e5f4f3a67a4290790f5 Author: Alan Garny '' Date: Fri Jan 25 17:46:42 2013 +0100 Now emit an error if a solver cannot retrieve a property value for its initialisation '(closes' '#121).' commit da29765703c88b5ad8affd9367a68aad1e17b3a9 Author: Alan Garny '' Date: Fri Jan 25 16:51:25 2013 +0100 Some work on retrieving all the model parameters '(#112).' commit e62f0380ed0d9eb66c2ca13d1815fb1914061062 Author: Alan Garny '' Date: Fri Jan 25 16:44:55 2013 +0100 Allow the switching of modes even when a file has been modified '(only' the editing views now remain 'disabled).' commit 779954afead58ce14231a560d3ff90ebf7b69c9a Author: Alan Garny '' Date: Fri Jan 25 16:30:21 2013 +0100 Some cleaning up '(#142).' commit b1c720136a1b17dae687d6ff9ae839eceb896862 Author: Alan Garny '' Date: Fri Jan 25 14:43:52 2013 +0100 Some minor cleaning up. commit 25663428053c561df332d58e75f9aa23e020938d Author: Alan Garny '' Date: Fri Jan 25 14:05:01 2013 +0100 Some minor cleaning up. commit 22e685cee2962dea1254bc340dc36818a2d2728e Author: Alan Garny '' Date: Fri Jan 25 11:55:29 2013 +0100 Tried to be too ''\''smart'\''' with our tree item delegates... commit 5b60f80ddfc1eb93024ada95ed5980879b289d85 Author: Alan Garny '' Date: Fri Jan 25 11:48:52 2013 +0100 Some work on retrieving all the model parameters '(#142).' Also some minor cleaning up. commit b36299d7f7277a81b6e44a6c9c5ae2b45954c635 Author: Alan Garny '' Date: Fri Jan 25 10:57:37 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit fe1390cacace7e66a63daf3da31c644a206a82f3 Author: Alan Garny '' Date: Thu Jan 24 19:16:34 2013 +0100 Some minor cleaning up of our CellMLAnnotationView plugin. commit b7b1ba6e513b2bde2ed12eb58d375368a0880c86 Author: Alan Garny '' Date: Thu Jan 24 19:07:47 2013 +0100 Imrpoved PropertyEditorWidget '(#142).' commit 99dbaddf943aa4de2011e787d15ce162ba96c065 Author: Alan Garny '' Date: Thu Jan 24 18:28:12 2013 +0100 Some minor cleaning up. commit cb10b80b79fda76c0f66105209797df927aca3dd Author: Alan Garny '' Date: Thu Jan 24 17:40:05 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 4fe56aa3cdf3302baedd0f0fb96817975f90067b Author: Alan Garny '' Date: Thu Jan 24 16:29:45 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit d9b32382046a34abe4b9161c430f6a2b0e409a93 Author: Alan Garny '' Date: Thu Jan 24 16:20:26 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 4262bd64dd2baa4209d7152936f315046b9e8242 Author: Alan Garny '' Date: Thu Jan 24 14:40:14 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 0234555174c5ebe2a5ddd8d3efd119668aa379d5 Author: Alan Garny '' Date: Thu Jan 24 13:54:09 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit 2b22aab124339c95eeaa30ce7965c4a910ddf5fd Author: Alan Garny '' Date: Thu Jan 24 13:24:51 2013 +0100 Some work on retrieving all the model parameters '(#142).' commit e1429f2d0d696fd2a55fda3cab7d36ae1f7760d5 Author: Alan Garny '' Date: Thu Jan 24 11:05:34 2013 +0100 Let people know why they 'can'\''t' switch modes/views. commit 07e39533d83a196597785444a32d8e5140824863 Author: Alan Garny '' Date: Thu Jan 24 11:03:07 2013 +0100 Let people know why they 'can'\''t' switch modes/views. commit 34e3909610cbbf380f6ae3c16265a7aa42ca9be9 Author: Alan Garny '' Date: Thu Jan 24 10:35:53 2013 +0100 Reverted a small change which broke things in our CellMLAnnotationView plugin. commit eda13c5a323bea205dfc1636b9b504814e688afd Author: Alan Garny '' Date: Thu Jan 24 10:03:48 2013 +0100 Some '(minor)' work on retrieving all the model parameters '(#142).' commit 3a97cb3f5b6b2d5f839a41605943042455512de6 Author: Alan Garny '' Date: Wed Jan 23 18:35:33 2013 +0100 Some more '(minor)' work on retrieving all the model parameters '(#142).' commit 4542bd9505f604640e5fc043422c2f40dfb5514e Author: Alan Garny '' Date: Wed Jan 23 18:27:33 2013 +0100 Done with replacing QRegExp with the better QRegularExpression '(#137).' commit 802227ad44161f55a5b3363bdbdcd14bbbbd86f3 Author: Alan Garny '' Date: Wed Jan 23 18:19:37 2013 +0100 Slightly improved our CellMLAnnotationView plugin. commit 973432b21166de50982d902951f4b1523a6a3d16 Author: Alan Garny '' Date: Wed Jan 23 17:43:36 2013 +0100 Started replacing QRegExp with QRegularExpression '(#137).' commit b8050eb000aef655da0be716115b3adfcedee2d3 Author: Alan Garny '' Date: Wed Jan 23 17:32:19 2013 +0100 Started working on retrieving all the model parameters '(#142).' commit 2e66391bf7f4111f990a9ffd490e27495eb0f9a2 Author: Alan Garny '' Date: Wed Jan 23 13:24:33 2013 +0100 Allow CollapsibleWidget to be collapsed/expanded by simply double clicking its 'header'\''s' title commit 40e176e59ec6d98aa2b07a09dbc23abf184ccb85 Author: Alan Garny '' Date: Wed Jan 23 13:23:08 2013 +0100 Some minor cleaning up. commit 1a07ab7f783db6fccc233b5d32131e1f698638e4 Author: Alan Garny '' Date: Wed Jan 23 12:02:23 2013 +0100 Fixed a few CellML-related issues in our SingleCellSimulation plugin '(#112).' commit 3fd24b3af587736190ba7832af3fafba999247e3 Author: Alan Garny '' Date: Wed Jan 23 11:18:44 2013 +0100 Keep track / retrieve the width of our property 'editors'\''' columns in the Parameters section '(#112).' commit 30fa06b4aab44ceee179a4c1e75c72caddbcde14 Author: Alan Garny '' Date: Wed Jan 23 10:34:53 2013 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit 7332e613b91392ad4d5e25090cd670240e6f456c Author: Alan Garny '' Date: Wed Jan 23 10:23:43 2013 +0100 SingleCellSimulation plugin: some work on our Parameters property editor. Also changed the proxy focus for our simulation view '(it' used to be the Simulation property editor, but since it can be collapsed we now use the graph panels widget 'instead)' and did some minor cleaning up. commit 3d053c5caea9b84e05935ede8ce8fb436633455c Author: Alan Garny '' Date: Tue Jan 22 16:28:13 2013 +0100 Addressed a few Qwt-related warnings on Windows. commit a7bf07028400917958b3177d06ed1352e39d068b Author: Alan Garny '' Date: Tue Jan 22 15:00:38 2013 +0100 Upgraded Qwt from version 6.0.2 to version 6.1.0 RC2. Also ''\''upgraded'\''' our Oxygen icons from version 4.9.97 to version 4.9.98. commit 305dd0b10fc08efa5618d2cda8c28acec0b65299 Author: Alan Garny '' Date: Tue Jan 22 13:41:23 2013 +0100 Slight updates to the developer documentation. commit bd5d7807e33e7b238266ce0cce2adc4a50f40e71 Author: Alan Garny '' Date: Tue Jan 22 13:16:09 2013 +0100 Minor editing of a comment. commit 51e0e3977636c51eead86ab7e11947d231b853d9 Author: Alan Garny '' Date: Mon Jan 21 19:57:43 2013 +0100 New snapshots. commit 654364411b8b2fbb269f1f877774820dccad26a1 Author: Alan Garny '' Date: Mon Jan 21 18:05:30 2013 +0100 Improved our handling of a double click in TreeViewWidget. commit d57829a23b3e13ac22d0349890d840c202344ec8 Author: Alan Garny '' Date: Mon Jan 21 17:39:29 2013 +0100 Fixed the CSS import issue '(it' was just the syntax that changed between Qt 4 and Qt '5!' Closes '#127).' Also some minor cleaning up. commit e4e9f0169794824f981ed30ded0a3916cb842e04 Author: Alan Garny '' Date: Sun Jan 20 18:01:35 2013 +0100 Fixed our TreeView widget which caused our FileBrowser plugin '(as' well as our FileOrganiser plugin in 'fact)' not to respond to the double clicking of a file '(closes' '#135).' commit b58c60357ce49c8415c5bbdf344835704eee73ab Author: Alan Garny '' Date: Fri Jan 18 17:19:18 2013 +0100 Some minor cleaning up. commit 73f17353d7ff3363388014b845674206070d1e8c Author: Alan Garny '' Date: Fri Jan 18 15:30:02 2013 +0100 Minor update to the developer documentation. commit 55fd4b1140387ca80b0de4a94993c82341a46ee9 Author: Alan Garny '' Date: Fri Jan 18 13:48:18 2013 +0100 Some minor Linux-related fixes to some of our CMake files. commit 29fe670f73c2d889a8d66a7532cf084b4843e34d Author: Alan Garny '' Date: Fri Jan 18 13:13:06 2013 +0100 Some minor Windows-related fixes to some of our CMake files. commit 90e36c2bce73d780780f2a6046aa8d92c17f1e03 Author: Alan Garny '' Date: Fri Jan 18 11:20:45 2013 +0100 Stopped using macdeployqt on OS X and, instead, deploy everything ourselves '(closes' '#124).' Also some cleaning up of our CMake files. commit ea09b330db59cdb1a9731f0dae5398aa105d62fe Author: Alan Garny '' Date: Wed Jan 16 14:32:49 2013 +0100 Upgraded jQuery from version 1.8.3 to version 1.9.0, and the Oxygen icon theme from version 4.9.2 to version 4.9.97. commit 0aa5caad38ca4216e7061a2dabf0f72ba74629a2 Author: Alan Garny '' Date: Wed Jan 16 11:50:25 2013 +0100 Got rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit system. commit e4533abb791dc6085a8a1c8fe8d8d43baa91686b Author: Alan Garny '' Date: Wed Jan 16 11:49:37 2013 +0100 Revert '"Revert' '"Minor' CSS fix for our user documentation '(for' Internet Explorer '10).""' This reverts commit e67a849b61fec3ec653a406dc1ebe9eafabe973c. commit a9d1a9683b9187759f8151c12cb821976fd6c198 Author: Alan Garny '' Date: Wed Jan 16 11:49:37 2013 +0100 Revert '"Revert' '"Minor' editing of a 'comment.""' This reverts commit fb5ca80b5416ab767b9d09431e6b6c53e6f54c62. commit 21b98c99d8bb38b9cbf183e09670d67970711a48 Author: Alan Garny '' Date: Wed Jan 16 11:49:37 2013 +0100 Revert '"Revert' '"Can' now deploy OpenCOR on Windows '(in' addition to Linux and OS 'X;' '#120).""' This reverts commit 313d26c3ad9944669c7c0138a508b2c8a871638a. commit 6cec440ecc39b01666fd44d83299925ade251bf7 Author: Alan Garny '' Date: Wed Jan 16 11:49:37 2013 +0100 Revert '"Revert' '"Some' work on addressing the issue of importing a CSS file into another '(#127).' Also some minor cleaning up and a minor 'fix.""' This reverts commit 7f51611da0beddee62db1bf0b43d4f59df47f568. commit dd61faacbb5dfd59bfc573eadff1aa7a2d1adcc3 Author: Alan Garny '' Date: Wed Jan 16 11:49:37 2013 +0100 Revert '"Got' rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit 'system."' This reverts commit 62788e869a191b5338850fcaf5f28ad88730d649. commit 835524d7b3a1f0f746bc823e9efc3f918c7c9ba8 Author: Alan Garny '' Date: Wed Jan 16 11:43:21 2013 +0100 Got rid of the -headerpad_max_install_names property for the linker on OS X since that property is not needed on a 64-bit system. commit 9e5c6e815018fbbaa08ccf4b8ad535305dd86b85 Author: Alan Garny '' Date: Wed Jan 16 10:47:01 2013 +0100 Revert '"Some' work on addressing the issue of importing a CSS file into another '(#127).' Also some minor cleaning up and a minor 'fix."' This reverts commit 2ebcba48c907e734d41e3a4426d358988b91f4bd. commit 676787b2eef347e5e1fdd6c810f5b44751e6bed2 Author: Alan Garny '' Date: Wed Jan 16 10:47:01 2013 +0100 Revert '"Can' now deploy OpenCOR on Windows '(in' addition to Linux and OS 'X;' '#120)."' This reverts commit a7bad65a8ca8965cfa03e62c13a102a6932c3611. commit 6994326524a2e69ea1c3948c9dd98c5562447ddd Author: Alan Garny '' Date: Wed Jan 16 10:47:01 2013 +0100 Revert '"Minor' editing of a 'comment."' This reverts commit 0723ec9ca8a7ade0c3c1d126c6f118d2c1f59364. commit 19d6f7333828622bf92567b2a056b101631e2d81 Author: Alan Garny '' Date: Wed Jan 16 10:47:01 2013 +0100 Revert '"Minor' CSS fix for our user documentation '(for' Internet Explorer '10)."' This reverts commit d929590ef376703e4c0fddf25fae74ba20bd580d. commit a286f57a0c07a1f7a6ac8702a1d066f9bf67efb4 Author: Alan Garny '' Date: Wed Jan 16 09:51:33 2013 +0100 Minor CSS fix for our user documentation '(for' Internet Explorer '10).' commit 0900cf45d926b8308003e54cba210434a936f06d Author: Alan Garny '' Date: Tue Jan 15 17:03:39 2013 +0100 Minor editing of a comment. commit c6e11999e0e56a008249abb9916e8b8ec5a7003d Author: Alan Garny '' Date: Tue Jan 15 16:19:28 2013 +0100 Can now deploy OpenCOR on Windows '(in' addition to Linux and OS 'X;' '#120).' commit cbde9e6be2ffba9b33df28bf5ffd7f5a74e32741 Author: Alan Garny '' Date: Tue Jan 15 15:10:05 2013 +0100 Some work on addressing the issue of importing a CSS file into another '(#127).' Also some minor cleaning up and a minor fix. We 'don'\''t' rely on the CSS importing feature anymore. Instead, we directly include all the CSS files in a HTML file. However, this has resulted in another unrelated issue which is that, since the import statement was different for the online and offline help, we now have to programmatically change the CSS style of span.opencor. Though this should be very simple '(see' line 215 of 'helpwidget.cpp),' it 'doesn'\''t' 'work!' At least, not when we want to change the display propery of span.opencor. If we had wanted to change its colour, then it would have been fine '(!!).' So, though now the help is all styled and everything, we 'can'\''t' currently show the code which would allow the help to command OpenCOR '(through' 'OpenCOR'\''s' URL 'scheme).' commit c7ab3c6ae6c579dc9e0aa16dcdca0b8486b27e65 Merge: 1561d2e7e 0d3becd11 Author: Alan Garny '' Date: Mon Jan 14 19:13:03 2013 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 1561d2e7ee5640502158bde9bca23b940484d333 Author: Alan Garny '' Date: Mon Jan 14 19:11:00 2013 +0100 Minor update to the developer documentation. commit 0d3becd1109081e69dd4a0b9ce2d6a9ea439077c Author: Alan Garny '' Date: Mon Jan 14 17:11:22 2013 +0100 Minor editing of a comment. commit 2d4f1af1db4315dce0c266278701bc22083a818c Author: Alan Garny '' Date: Mon Jan 14 17:09:48 2013 +0100 Minor editing of a comment. commit 1233a3a5b833d8147f0a1ca73a3f2a391bbc7448 Author: Alan Garny '' Date: Mon Jan 14 16:38:31 2013 +0100 Some minor editing of a comment. commit 53b9bc3e62d9249ef1ddc4b423233ec6439b9198 Author: Alan Garny '' Date: Mon Jan 14 15:39:27 2013 +0100 Some minor comments. commit 488046be9131d4178082dcf2632dc4425fd4f2a0 Author: Alan Garny '' Date: Sat Jan 12 01:14:29 2013 +0100 Fixed a couple of memory leaks. commit 6d3e34df3df9d6c83c1601f62590a9069e582efa Author: Alan Garny '' Date: Sat Jan 12 01:09:21 2013 +0100 Fixed a couple of memory leaks. commit c7bff03bf39bb71fffbe433b4f3eb9289841b12f Author: Alan Garny '' Date: Fri Jan 11 23:55:25 2013 +0100 Updated the developer documentation. commit f9a2932f0431bc679408d69bb33f201af06f9b53 Merge: 8f1fc3ac6 7b430d8c1 Author: Alan Garny '' Date: Fri Jan 11 20:33:35 2013 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor Conflicts: CMakeLists.txt commit 8f1fc3ac681c23cf8c42e36c48cf68d99a595b33 Author: Alan Garny '' Date: Fri Jan 11 19:43:14 2013 +0100 Some work on the Windows deployment. commit 7b430d8c1a881c77f5993998266996f0fadc9939 Author: Alan Garny '' Date: Fri Jan 11 19:43:14 2013 +0100 Some work on the Windows deployment. '(Possibly)' improved Linux deployment. commit 049111eb8b3bdcbc47448b205d5b36e716ba02d3 Author: Alan Garny '' Date: Fri Jan 11 18:23:15 2013 +0100 Can now deploy OpenCOR on Linux '(#120).' commit 4576a2a604ca207973ee13bc33e8928981e1e3bf Author: Alan Garny '' Date: Fri Jan 11 17:33:11 2013 +0100 Some work on deploying the Linux version of OpenCOR '(#120).' commit 1d06f2f54cd5ab95549441a2a426ac925f00f2a6 Author: Alan Garny '' Date: Fri Jan 11 16:50:43 2013 +0100 Some minor cleaning up. commit f1a978183a3b607ea7b8c94907263cfabc64c93c Author: Alan Garny '' Date: Fri Jan 11 15:36:20 2013 +0100 Qt 5: got rid of the Linux qt.conf since it now breaks things for us '(and' we 'don'\''t' actually need it -- the default path for the plugins directory is what we use 'anyway).' commit 92f6517721d67013fe70485c5c13b3b074f74d15 Author: Alan Garny '' Date: Fri Jan 11 14:49:46 2013 +0100 Some minor cleaning up. commit 887460230e15967e2a19c22cb53ea4659bc4fadd Author: Alan Garny '' Date: Fri Jan 11 14:13:42 2013 +0100 Some minor cleaning up. commit dde1bb69b685eef9090f14bb781fea41da242721 Author: Alan Garny '' Date: Fri Jan 11 13:10:26 2013 +0100 Some minor cleaning up. commit bf068649087aeb324614c5eec872b9346a5bcb23 Author: Alan Garny '' Date: Thu Jan 10 10:01:21 2013 +0100 Slightly improved our matching of metadata ids. commit ef8102ba61b9d86df2c0b41abd6f393e19170f27 Author: Alan Garny '' Date: Wed Jan 9 21:23:51 2013 +0100 Minor editing. commit 12f28bcad6f7ddcb4e86afa4df4937ed96c18550 Author: Alan Garny '' Date: Wed Jan 9 19:29:36 2013 +0100 Added a comment. commit 5c0cf6d04da73cc0e0367202c469045801782ce4 Author: Alan Garny '' Date: Wed Jan 9 18:41:49 2013 +0100 Fixed the full screen mode issue on OS X '(closes' '#125).' commit 928cc6ac6ae40c99faa109eb54ff7354fedf80ca Author: Alan Garny '' Date: Wed Jan 9 18:25:03 2013 +0100 Minor comment. commit cd9ae645942063349061a2672185fbcce9092cd4 Author: Alan Garny '' Date: Wed Jan 9 17:48:05 2013 +0100 Improved our full screen mode. Also some minor cleaning up. commit b3b43b6edea353d0d1ee583049c2c95b7d9685bc Author: Alan Garny '' Date: Wed Jan 9 15:18:58 2013 +0100 Some minor cleaning up with regards to some shortcuts. commit 70f3a9b431030f1f7cf0b5d0609b452d671fa74f Author: Alan Garny '' Date: Wed Jan 9 14:22:25 2013 +0100 Qt 5: some minor cleaning up. commit 34615bce61969012c999b47927ffecb1d457c171 Author: Alan Garny '' Date: Wed Jan 9 13:58:28 2013 +0100 Some minor cleaning up. commit 44fffef51013b90b6a426a6759c1c94c644906e8 Author: Alan Garny '' Date: Wed Jan 9 13:57:29 2013 +0100 Removed our RICORDOSupport plugin since it 'doesn'\''t' currently do anything. commit 4fa7b2929c215c8e4c48d79284cfbfc9079598fc Author: Alan Garny '' Date: Wed Jan 9 13:13:41 2013 +0100 Some minor cleaning up. commit e3e9b2536f156e0706b1efe245adc42c3be82937 Author: Alan Garny '' Date: Wed Jan 9 12:57:01 2013 +0100 Fixed the Qt 5 related issue with TreeViewWidget '(closes' '#124).' commit 9b85f0ede99c93ae6785e445f175d9a63de890d5 Author: Alan Garny '' Date: Wed Jan 9 10:52:45 2013 +0100 Replaced QJson with Qt '5'\''s' JSON support '(closes' '#123).' commit ff412faee440db8cee6de37ca57eb029fe72ad87 Author: Alan Garny '' Date: Wed Jan 9 10:33:45 2013 +0100 Some cleaning up '(this' allows OpenCOR tests to run on Windows again following our move to Qt '5).' commit 662ad362f8f307d0d1604a40c36190f752088511 Author: Alan Garny '' Date: Tue Jan 8 17:39:37 2013 +0100 Some minor cleaning up. commit 199c158c89334281e2776ec5ae7f4ebe2283ba58 Author: Alan Garny '' Date: Tue Jan 8 17:15:28 2013 +0100 A lot of work on porting OpenCOR to Qt 5 '(#120).' We can now build on all three platforms, but not yet deploy. Note that there appear to be a few issues with Qt 5 which will need to be looked into. Otherwise, quite a bit of cleaning up too. commit 9055cae430833544b60f11c290f549651181b1cd Author: Alan Garny '' Date: Wed Jan 2 23:25:50 2013 +0100 Use 'llvm::outs()' '(rather' than 'llvm::errs())' for debugging outputs since that stream is used by Qt Creator to retrieve compilation issues, and some of our Compiler 'plugin'\''s' tests generate some ''\''valid'\''' compilation errors, so... commit 6aaadfbfeb897a4b03cdd8146e877595bf5ba029 Author: Alan Garny '' Date: Wed Jan 2 10:29:36 2013 +0100 Upgraded from version 6.0.1 to 6.0.2 of Qwt. commit 31eae6f0ce056418774f6439cd53632dbc0cf00f Author: Alan Garny '' Date: Tue Jan 1 17:33:34 2013 +0100 Updated QtSingleApplication from Qt Creator 2.6.1. commit 69605980cbeaaaedad0f2bcedab92b4b9a35d7a1 Author: Alan Garny '' Date: Tue Jan 1 15:18:46 2013 +0100 Minor refactoring of our CMake files. commit a8175ce56db894d8119052a5e0000b6264bfbe6b Author: Alan Garny '' Date: Sun Dec 30 14:29:05 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 '(#122).' Some work on making things to build on Windows. Also built the release and debug on Windows. commit 73532c5eb97ed3ad230c6ddb47acab9fd4703188 Author: Alan Garny '' Date: Fri Dec 28 16:31:58 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 '(#122).' It seems to be working fine on OS X. commit 0e438d5a2d94f3533124a229f7970fa9c1f78991 Author: Alan Garny '' Date: Fri Dec 28 14:33:55 2012 +0100 Some work on upgrading LLVM from version 3.1 to version 3.2 '(#122).' It seems to be working fine on OS X. commit 1b9716ab7680a430f2a1b7295cbb2c71599f0a6e Author: Alan Garny '' Date: Fri Dec 21 01:44:20 2012 +0100 Got our list editor widget for our property editor widget to work as we want on OS X. commit ad469ec603efee848f32d9c9ddec57db5324e59b Author: Alan Garny '' Date: Thu Dec 20 23:20:24 2012 +0100 Added a comment about our list editor widget for our property editor widget since things 'don'\''t' work as on Windows and Linux. commit e83f1d9d6537d031dcb72ea49c481102f7cfc4c3 Author: Alan Garny '' Date: Thu Dec 20 22:27:18 2012 +0100 Improved our list editor widget for our property editor widget. commit 37a00587fd600e8330b03ab3573524e93a485697 Author: Alan Garny '' Date: Thu Dec 20 20:57:39 2012 +0100 Some minor cleaning up. commit cdf7fe8da36b742331ef92cccecd5e07a6347580 Author: Alan Garny '' Date: Thu Dec 20 14:34:37 2012 +0100 Some minor cleaning up. commit 6cecfb40d29678646b25f35f4ec79c741014d05f Author: Alan Garny '' Date: Thu Dec 20 11:46:35 2012 +0100 Replaced Q_WS_xxx with Q_OS_xxx in prepraration of our porting to Qt 5 '(#120).' commit 58892f8c6a2228cdea1072627d571d6741662418 Author: Alan Garny '' Date: Wed Dec 19 15:51:33 2012 +0100 Fixed a small issue between Internet 9 and the web site. commit 1c89edef878d19548268c086d6c5dadf3b19b179 Author: Alan Garny '' Date: Wed Dec 19 15:38:45 2012 +0100 Some minor refactoring of ''\''struct'\''s' to ''\''class'\''s.' commit caaca54a513622074bf0754d205da26325588b28 Author: Alan Garny '' Date: Wed Dec 19 14:21:20 2012 +0100 Some minor refactoring of ''\''struct'\''s' to ''\''class'\''s.' commit 5a58f289c3c162b96125c7b6c2bb6878de5bbc6b Author: Alan Garny '' Date: Tue Dec 18 18:04:37 2012 +0100 Fixed a memory leak. commit f2240f0b3c2fe5bffb706f2d28c9febd66a6d3d7 Author: Alan Garny '' Date: Tue Dec 18 18:00:13 2012 +0100 Some minor cleaning up. commit d122dc86dcb3fc1ec9fcf60d05a98502b3a99400 Author: Alan Garny '' Date: Tue Dec 18 17:53:16 2012 +0100 Some minor refactoring of ''\''struct'\''s' to ''\''class'\''s.' commit 1b0edd1d41e1bf80e0b85106bad7dbab27d0feb6 Author: Alan Garny '' Date: Tue Dec 18 17:21:02 2012 +0100 Some minor refactoring of ''\''struct'\''s' to ''\''class'\''s.' commit a9c92f04ea5aaa3b9343e46f0417b67cf6156edd Author: Alan Garny '' Date: Tue Dec 18 16:51:44 2012 +0100 Some minor refactoring of ''\''struct'\''s' to ''\''class'\''s.' commit 80409dee60ba6f3db27b9c5a1bf94647968f7a71 Author: Alan Garny '' Date: Tue Dec 18 16:06:08 2012 +0100 Some work on our 'solvers'\''' properties '(#112).' We now have a default value. commit ba0fc28d95dac27cd0bcf4396088eab2d045e0fd Author: Alan Garny '' Date: Tue Dec 18 15:58:29 2012 +0100 Some work on the solver interface for properties to have a default value. commit 82a0a1dee79e6acdd7e1f3dd2584d2f7df4ec8c6 Author: Alan Garny '' Date: Tue Dec 18 15:57:12 2012 +0100 Some work on the solver interface for properties to have a default value. commit 0c2c818e0d73bf194c6a3227b777e5aa2732c586 Author: Alan Garny '' Date: Tue Dec 18 15:21:09 2012 +0100 Some work on the simulation and solvers properties '(#112).' Can now keep track of the 'properties'\''' values for a given CellML file. commit 1f99a998bf0f4649196d217006a40bbff8158632 Author: Alan Garny '' Date: Tue Dec 18 15:06:13 2012 +0100 Some work on the simulation and solvers properties '(#112).' Can now keep track of the 'properties'\''' values for a given CellML file. commit 1a4cd91942d6f43859889176e47623de2025a842 Author: Alan Garny '' Date: Tue Dec 18 12:52:12 2012 +0100 Some minor cleaning up. commit 96d684e5a7956802db2a5a66ba6f9b4a56673b42 Author: Alan Garny '' Date: Tue Dec 18 11:55:13 2012 +0100 Some minor cleaning up. commit 856e2d4ec2e28063d772c0890d94e9a0d52d9563 Author: Alan Garny '' Date: Tue Dec 18 11:51:18 2012 +0100 Some minor cleaning up. commit 06488d2379b9e331b07ac90a6c3a7b4e6a3a85f8 Author: Alan Garny '' Date: Tue Dec 18 11:46:10 2012 +0100 Some minor cleaning up. commit 1d7d7c45d1f9b2171b48af4f7ea0c7bb3f2dbeda Author: Alan Garny '' Date: Mon Dec 17 19:16:50 2012 +0100 New snapshots. commit 56cb7b42f50003c5e3d5c98568d477a8b5a1d24e Author: Alan Garny '' Date: Mon Dec 17 18:32:07 2012 +0100 Some refactoring of our SingleCellSimulation plugin '(#112).' commit d90e23e31452b16666cd533eeac2ce18c5e91893 Author: Alan Garny '' Date: Mon Dec 17 16:59:53 2012 +0100 Some refactoring of our SingleCellSimulation plugin '(#112).' commit 0a18243c748b957d163f4dbb8f7847ef0de67c05 Author: Alan Garny '' Date: Mon Dec 17 16:20:40 2012 +0100 Some refactoring of our SingleCellSimulation plugin '(#112).' commit 7337b6d535e298e0a00da14713a55a12d01bd2c5 Author: Alan Garny '' Date: Mon Dec 17 15:52:14 2012 +0100 Some refactoring our SingleCellSimulation plugin '(#112).' commit c377eae720c807463101cddd21ffcae1eb5c3dd1 Author: Alan Garny '' Date: Mon Dec 17 15:06:44 2012 +0100 Some refactoring our SingleCellSimulation plugin '(#112).' commit 20f51ba68b21960a05ba81ad816a342643d11bba Author: Alan Garny '' Date: Mon Dec 17 14:01:57 2012 +0100 Some minor cleaning up. commit e21d636cfbcbba630f1ef64d2670b6a1a5e015d4 Author: Alan Garny '' Date: Sun Dec 16 13:56:16 2012 +0100 Allow our property editor widget not to show its units column '(since' units are not relevant for our list of 'traces).' commit 18e12b1b1d724ce5e912b35fde32731da7592106 Author: Alan Garny '' Date: Sat Dec 15 19:37:10 2012 +0100 ow use a wheel to change the delay between the output of two data points. commit 7b02807dfc9f73a04fb28691aadce75b083bc119 Author: Alan Garny '' Date: Sat Dec 15 15:42:03 2012 +0100 Now use a wheel to change the delay between the output of two data points. commit 50b693255fc7a87ff94f3beb52a710fdca11b1f2 Author: Alan Garny '' Date: Sat Dec 15 12:10:35 2012 +0100 Updated the developer documentation. commit 7637921428a0510b743f163282fad9288e209c84 Merge: 949210c2f eed8003d1 Author: Alan Garny '' Date: Sat Dec 15 12:03:15 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 949210c2f45119e5ee15c87c597ccf3ca82166c0 Author: Alan Garny '' Date: Sat Dec 15 03:17:59 2012 +0100 Upgraded QScintilla from version 2.6.2 to version 2.7. commit eed8003d1f0289bbab10674f4d01422f04a2ce0b Author: Alan Garny '' Date: Sat Dec 15 03:17:59 2012 +0100 Updated the developer documentation. commit ecaafa4bdc54c02044ec47fb70096fa838c9414a Author: Alan Garny '' Date: Sat Dec 15 02:25:03 2012 +0100 Upgraded QJSon from version 0.7.1 to version 0.8.1. commit 0feb4a7759bca3cf90f4553c07efef9cc1c93478 Author: Alan Garny '' Date: Fri Dec 14 18:17:45 2012 +0100 Use the VOI unit for any solver parameter that needs a unit '(#112).' commit 7b5d6db3c45c87b6050d0d1f8a055726f880a274 Author: Alan Garny '' Date: Fri Dec 14 17:23:29 2012 +0100 Some work on our 'solvers'\''' infrastructure. commit 6bb8ec5f4ee2297ed838132dda1ac095898b767c Author: Alan Garny '' Date: Fri Dec 14 17:08:19 2012 +0100 Some minor cleaning up. commit ab96a8dcd2e8593ffc7c1fced2718eccda13803d Author: Alan Garny '' Date: Fri Dec 14 16:40:18 2012 +0100 Support double clicking on a list item in our property editor widget, this to automatically go to the next item in the list '(or' go back to the first item, if 'needed).' commit f6d292c53ac16d6ad95ef688b792d32c191e179b Author: Alan Garny '' Date: Fri Dec 14 15:39:42 2012 +0100 Can now show/hide the properties associated to a particular solver '(#112).' commit be28e25e181b4e838414bf82f0b6b0d0260f931d Author: Alan Garny '' Date: Fri Dec 14 14:46:54 2012 +0100 A minor fix for our SingleCellSimulation plugin. commit 0add656bc196e299fd42f66cf25bb795052eef91 Author: Alan Garny '' Date: Fri Dec 14 13:00:22 2012 +0100 Keep track of changes to a list property '(#112).' commit 9511d14878d0a9ed66b1ca018ac73d8801845ff0 Author: Alan Garny '' Date: Fri Dec 14 11:54:42 2012 +0100 Fixed a small issue with the resizing of headers in our property editor widget. commit 98f6c9b673c3edfe1bdc9ba103452f6e8b9930e1 Author: Alan Garny '' Date: Fri Dec 14 11:48:50 2012 +0100 Some minor cleaning up. commit 653ba7c9616bdeabaa18a73f64ab003e6f87dc04 Author: Alan Garny '' Date: Fri Dec 14 11:40:27 2012 +0100 Keep track of changes to a list property '(#112).' commit 7c0b5625141885a48f99959778d0e33b4a74a42a Author: Alan Garny '' Date: Thu Dec 13 18:09:56 2012 +0100 Minor editing. commit c53468b19672c2b368b114bb92b7e08038bba49c Author: Alan Garny '' Date: Thu Dec 13 18:01:02 2012 +0100 Some work on our property editor. commit fd300852948acab9c5f18f0cfc7757dc6387cee9 Author: Alan Garny '' Date: Thu Dec 13 17:27:07 2012 +0100 Improved TreeViewWidget so that double clicking anywhere on a row '(as' opposed to just in its first 'column)' results in the row expanding/collapsing '(if' 'possible).' commit 5367e3827e9bdaae0c6525e7b7ec3dcaf53b01b6 Author: Alan Garny '' Date: Thu Dec 13 16:58:44 2012 +0100 Some work on our solvers property editor '(#112).' commit a3b4836f7912d4160692d03c477122158800735f Author: Alan Garny '' Date: Thu Dec 13 15:14:05 2012 +0100 $'\020Some' minor cleaning up. commit a80adc6240f3004897e6e440ce612ec2e7ec4570 Author: Alan Garny '' Date: Thu Dec 13 13:16:46 2012 +0100 Some work on our solvers property editor '(#112).' commit e5d393b09b10965fb9d0c739240c04f534a7f86a Author: Alan Garny '' Date: Thu Dec 13 11:51:00 2012 +0100 Some work on our property editor widget and solvers property editor '(#112).' commit fb01d87c7d8cc1f55f42545ebc2958b0880afbd6 Author: Alan Garny '' Date: Wed Dec 12 18:17:25 2012 +0100 Some work on our property editor widget and solvers property editor '(#112).' commit 7afa84b69aa166867beb871c3b2990c6eb4f5d43 Author: Alan Garny '' Date: Wed Dec 12 15:43:38 2012 +0100 Some minor cleaning up. commit 05bb179b61f5e3cf3151620423b10a35a8a94d2a Author: Alan Garny '' Date: Wed Dec 12 15:39:04 2012 +0100 Some work on our property editor widget and solvers property editor '(#112).' commit e5b0d472480bc17f2542cc957ffe9b919db6879c Author: Alan Garny '' Date: Wed Dec 12 14:49:23 2012 +0100 Some work on our solvers property editor '(#112).' commit bd0fb5fbf3f33c9bec034b6b1d2cb1e9f36e0993 Author: Alan Garny '' Date: Wed Dec 12 14:34:38 2012 +0100 Some work on our property editor. commit 76121f9a168e3120cd6175e88c63e1610b4150ae Author: Alan Garny '' Date: Tue Dec 11 18:07:38 2012 +0100 Minor fix to get things to build on Windows. commit f1d807eea403817f503494bed10b98f7d8e9c4c7 Author: Alan Garny '' Date: Tue Dec 11 17:56:45 2012 +0100 Reworked our property editor quite a bit to make it easier to expand. commit 597a6ccc929fe5c3d9bfac4126075d2596e2d2df Author: Alan Garny '' Date: Tue Dec 11 16:01:53 2012 +0100 Some work on our property editor widget. commit 2de2c40f9fec075dbfe32ec087f8ad69b42c0604 Author: Alan Garny '' Date: Tue Dec 11 14:51:07 2012 +0100 Improved our property editor widget and fixed a small GUI issue. commit ec9889c4e2c6d76eba487935fee60a266e4644f1 Author: Alan Garny '' Date: Tue Dec 11 14:25:48 2012 +0100 Some work on our property editor widget. commit 7070ac208d76c6944e7f34777105abb27a39dbee Author: Alan Garny '' Date: Tue Dec 11 13:52:10 2012 +0100 Some minor refactoring. commit f4d2e6dd4024d6545395c5da56b6fa59f3621b59 Author: Alan Garny '' Date: Tue Dec 11 13:52:02 2012 +0100 Some minor cleaning up. commit 1b114abfd7017f0bbe34de7a6e9e91178eb990b2 Author: Alan Garny '' Date: Tue Dec 11 13:33:25 2012 +0100 Some minor cleaning up. commit 4ec400ad4837b28ffa9c1cb11cfbbfff35716086 Author: Alan Garny '' Date: Tue Dec 11 13:33:15 2012 +0100 Some minor cleaning up. commit 71037fbad4324c9c5472d13c0e12ff24ed6fffaf Author: Alan Garny '' Date: Tue Dec 11 12:59:45 2012 +0100 Some work on supporing the ''\''editing'\''' of a list item in our property editor. commit ce15ca2b44f2137b59c3a4de7c90392cdca7a0d9 Author: Alan Garny '' Date: Tue Dec 11 11:52:05 2012 +0100 Some work on supporing the ''\''editing'\''' of a list item in our property editor. commit 5d838718835e182492cae30d3531d495e81551ac Author: Alan Garny '' Date: Mon Dec 10 18:23:14 2012 +0100 New snapshots. commit 4a3b7b6abfc3b1f9455de2b50ea746a26323e576 Author: Alan Garny '' Date: Mon Dec 10 18:21:03 2012 +0100 Minor fix for Windows. commit 3932de7864ffb76e814e1b820c8eb1d2424ab8e7 Author: Alan Garny '' Date: Mon Dec 10 18:03:16 2012 +0100 Fixed a small issue with the 'columns'\''' width of our Solvers property widget '(#112).' commit a97f0dcc9eb44b2348c80dbfb1a6e8a485c8f723 Author: Alan Garny '' Date: Mon Dec 10 17:29:12 2012 +0100 Some minor cleaning up. commit d3e81bd2e603e6354ade024d0266d3dd45c86f15 Author: Alan Garny '' Date: Mon Dec 10 17:01:56 2012 +0100 Fixed a small issue with our graph panels '(#112).' commit 575c160b057216777cdcb421a2b2f1d911a66506 Author: Alan Garny '' Date: Mon Dec 10 16:58:15 2012 +0100 Some minor cleaning up. commit 02b5dfb299bc8ec65746bc2dcfedc9d90a8251c0 Author: Alan Garny '' Date: Mon Dec 10 16:54:18 2012 +0100 Fixed some issues of splitters settings not being properly loaded/saved '(due' to them not being 'shown).' commit fd41578a76517a11f95f01e4b46a66b698f1a49d Author: Alan Garny '' Date: Mon Dec 10 16:45:56 2012 +0100 Some minor cleaning up. commit eda63cdb260163fa188a0d9c034113d654b07c99 Author: Alan Garny '' Date: Mon Dec 10 15:37:54 2012 +0100 Some work on our simulation plugin '(#112).' commit cc49035959612f90498f6c8e0167e6cd78d611bd Author: Alan Garny '' Date: Mon Dec 10 15:20:00 2012 +0100 Some work on our simulation plugin '(#112).' commit 548acc0a6137e39aca763d8b599648d16bfbad85 Author: Alan Garny '' Date: Mon Dec 10 15:15:08 2012 +0100 Some work on getting access to the available solvers needed to compute a model '(#112).' commit dca8b105a444dab67020965ba7ea4ce6300d0a6b Author: Alan Garny '' Date: Mon Dec 10 13:08:43 2012 +0100 Some work on getting access to the available solvers needed to compute a model '(#112).' Also some minor cleaning up. commit e51cac278e067c3c0cfa2f62d5a89573a58ca23a Author: Alan Garny '' Date: Mon Dec 10 10:52:16 2012 +0100 Some work on getting access to the available solvers needed to compute a model '(#112).' commit 4967ef1c6587a8afaee50d2dff90f4c53f914611 Author: Alan Garny '' Date: Mon Dec 10 10:49:47 2012 +0100 Some work on getting access to the available solvers needed to compute a model '(#112).' commit 55a1dd30b7dfdbd5e8e7cf948f384a2856754bf4 Author: Alan Garny '' Date: Sat Dec 8 03:12:23 2012 +0100 Improved Core::CollapsibleWidget. commit 557ade151f80e64a6e99ae56f59d9f0ac119b8d5 Author: Alan Garny '' Date: Fri Dec 7 18:52:02 2012 +0100 Some work on our simulation plugin '(#112).' commit 92dd823fcd97cf31a76e7c18410d60256f58afa7 Author: Alan Garny '' Date: Fri Dec 7 17:29:16 2012 +0100 Decided not to use QtPropertyBrowser in the end '(it' required too much tweaking around to get what I 'wanted).' commit 79107254c9ffb5381c5805a9f390b64e48137b9a Author: Alan Garny '' Date: Fri Dec 7 13:47:28 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 7d506c835af18b2d6104cb76753eed3862a3a619 Author: Alan Garny '' Date: Fri Dec 7 13:30:21 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 60d25d0c8089313076db9d141672c6c441419413 Author: Alan Garny '' Date: Fri Dec 7 13:10:14 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit d76c46ac3ecbcd49a47127962ad232df2e92dfdb Author: Alan Garny '' Date: Fri Dec 7 11:43:04 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 8e8a5a54ac804c93f82b4a0e2aa9d8ae7afbde8d Author: Alan Garny '' Date: Fri Dec 7 11:37:11 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit e461a05ff461664d7af67cb4a8ddbd848d2d09ec Author: Alan Garny '' Date: Fri Dec 7 11:30:55 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit b31c0502cc1ce0bae54f41b3c37431ae974fc7e5 Author: Alan Garny '' Date: Fri Dec 7 11:22:30 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 7cebe3bd7ad2b2f48a30dc7510023f7c5bd510e3 Author: Alan Garny '' Date: Fri Dec 7 11:19:06 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit dfd6826053f26f6a5d29d8e1a3c30bf4b24d7364 Author: Alan Garny '' Date: Fri Dec 7 10:59:46 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 4dd8880c5c1621f12bb44041f7ea44e9ad101e8f Author: Alan Garny '' Date: Fri Dec 7 10:32:24 2012 +0100 Some refactoring for our property editor. commit caa63230e8b9df35f796935ff65c52c26245ade5 Author: Alan Garny '' Date: Fri Dec 7 10:31:54 2012 +0100 Some refactoring for our property editor. commit ce5b9f1ad55ca2f7bea7891cec62ea47a3af26eb Author: Alan Garny '' Date: Fri Dec 7 10:06:10 2012 +0100 Some minor cleaning up. commit b7986b5a0ea721093114bd4fc67bca8ae449dde5 Author: Alan Garny '' Date: Thu Dec 6 18:56:56 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit f5dc423ce667c21e225ff35f985fbe3a1b1883f1 Author: Alan Garny '' Date: Thu Dec 6 18:14:35 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit fd2b22676e0f382a893549c22df0b395970c36be Author: Alan Garny '' Date: Thu Dec 6 16:40:43 2012 +0100 Some work on QtPropertyBrowserWidget to make it work as we want. commit 1843fbb570ffd65041ead6a1e39f5639a1988aa3 Author: Alan Garny '' Date: Thu Dec 6 15:29:48 2012 +0100 Some minor cleaning up. commit 46d8165fa01824fb1031d6883f3ce6f420619e17 Author: Alan Garny '' Date: Thu Dec 6 14:53:40 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin '(#112).' commit 7dbf67a6fd0c4eb07b06fe902a762cbb2fbbe861 Author: Alan Garny '' Date: Thu Dec 6 14:12:38 2012 +0100 Improved our property browser widget. commit fb3c342e22ce0bc16bb7f6677726abd7530db468 Author: Alan Garny '' Date: Thu Dec 6 13:28:25 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin '(#112).' commit 25d8b9782776e9a0f4ae12bce1d913434c724e7d Author: Alan Garny '' Date: Thu Dec 6 11:34:08 2012 +0100 Some work on CollapsibleWidget, as well as our simulation plugin '(#112).' commit 53127ab446b4690a7113ccf73f3826156a57d628 Author: Alan Garny '' Date: Thu Dec 6 10:17:31 2012 +0100 Some work on our simulation plugin '(#112).' commit 4616f5e78e8e2be5339178929b0106657a16350d Author: Alan Garny '' Date: Thu Dec 6 09:56:29 2012 +0100 Some minor cleaning up. commit d57a30f4034d2f1a34f3c3b2d58604b1b02ffe4c Author: Alan Garny '' Date: Wed Dec 5 17:40:59 2012 +0100 Some minor cleaning up. commit d9a70560a5db340268056486e5acda5ac1fb217e Author: Alan Garny '' Date: Wed Dec 5 17:40:26 2012 +0100 Some minor cleaning up. commit 12267a1fc685b911b7e9de829102bb5bf1068b7f Author: Alan Garny '' Date: Wed Dec 5 17:23:31 2012 +0100 Some minor refactoring. commit 4119d000bbfada5e01ea9a14ae2abdf7b9d87792 Author: Alan Garny '' Date: Wed Dec 5 17:03:14 2012 +0100 Some minor cleaning up. commit e5001f4929d2cddc2e8519d60882ea6f575dde78 Author: Alan Garny '' Date: Wed Dec 5 16:49:48 2012 +0100 Minor fix. commit 37c08dacf4ecf2fbafa0299c286887e86a6ff471 Author: Alan Garny '' Date: Wed Dec 5 16:45:21 2012 +0100 Some work on the simulation properties of our simulation plugin '(#112).' commit 3d4f4328f8bfd4afb9b42e9402d68784016e6da4 Author: Alan Garny '' Date: Wed Dec 5 16:44:58 2012 +0100 Some work on our support plugin for QtPropertyBrowser. commit 3fe992d7f4f3ff2e0ba564cf2f2ef88edb058d42 Author: Alan Garny '' Date: Wed Dec 5 15:15:19 2012 +0100 Some minor cleaning up. commit 193a7b7e4c90429fbf94a5f9d0a28409c1f911aa Author: Alan Garny '' Date: Wed Dec 5 14:18:11 2012 +0100 Some minor cleaning up of our collapsible widget. commit 3c00f3dd8b8024925d92560f4fb04c09baa6f432 Author: Alan Garny '' Date: Tue Dec 4 17:58:41 2012 +0100 Some minor cleaning up. commit 2723f9a2df2390e0848484a6b8a387b55dd5f3e3 Author: Alan Garny '' Date: Tue Dec 4 17:54:55 2012 +0100 Some minor cleaning up. commit 440a179693c7c870ad9540d5244281f14ebedd76 Author: Alan Garny '' Date: Tue Dec 4 17:47:22 2012 +0100 Some work on the simulation properties of our simulation plugin '(#112).' commit 348f694e76845adac27aecf428b9274d432caf84 Author: Alan Garny '' Date: Tue Dec 4 17:07:19 2012 +0100 Some work on setting up our property editor '(#112).' commit 1b22de0de07c37c09b21a96b7ecc6bc40196b701 Author: Alan Garny '' Date: Tue Dec 4 16:13:02 2012 +0100 Some minor cleaning up. commit 9ff702a0f912181b8d41da6d5a3be7e5f9df5a98 Author: Alan Garny '' Date: Tue Dec 4 15:09:54 2012 +0100 Some work on the simulation properties of our simulation plugin '(#112).' commit 3825a7cc2b81e858e2e10fd2b007997aed34c233 Author: Alan Garny '' Date: Tue Dec 4 14:54:45 2012 +0100 Some work on the simulation properties of our simulation plugin '(#112).' commit eae395c249d60686e1314506ff25d5d06b6dc6b3 Author: Alan Garny '' Date: Tue Dec 4 11:38:15 2012 +0100 Some minor fixes. commit 670c5f99ef202051cc03d07649bc1dff45031c44 Author: Alan Garny '' Date: Mon Dec 3 19:53:54 2012 +0100 New snapshots. commit ef70471042c55b53ad6eadaa51524f4220630356 Author: Alan Garny '' Date: Mon Dec 3 19:24:37 2012 +0100 Some minor fixes for things to build on Windows. commit fdc4009bb6577876a96ef09adf880b94edd898e1 Author: Alan Garny '' Date: Mon Dec 3 18:35:25 2012 +0100 Some work on setting up our property editor '(#112).' commit 22375211040f13de71edd0de1d164d697021f8a4 Author: Alan Garny '' Date: Mon Dec 3 18:30:55 2012 +0100 Some work on setting up our property editor '(#112).' commit be87d7f98b0bae885833dce5b66daf574f36aef2 Author: Alan Garny '' Date: Mon Dec 3 18:10:07 2012 +0100 Some work on setting up our property editor '(#112).' commit 61115bf12b20ad2d3968ae68702771288f017566 Author: Alan Garny '' Date: Mon Dec 3 18:09:16 2012 +0100 Some minor cleaning up. commit 3d2c2bb63accdbc7d8c4f8b1def294fafd57ee30 Author: Alan Garny '' Date: Mon Dec 3 18:01:21 2012 +0100 Some minor cleaning up. commit 278876cf52539c87011b340ae40f696573a72484 Author: Alan Garny '' Date: Mon Dec 3 18:00:45 2012 +0100 Fixed a very frustrating issue related to the translation of plugins. commit 582ed8c9b9b9d644935aa2eef73ded493681a7c0 Author: Alan Garny '' Date: Mon Dec 3 13:15:00 2012 +0100 Some work on setting up our property editor '(#112).' commit 66f32e0ae4a5470c758ce0e5708106bca271f6ae Author: Alan Garny '' Date: Mon Dec 3 11:37:29 2012 +0100 Some work on setting up our property editor '(#112).' commit dca7881ca808417375c16549cf5ad7e9ac54e2f0 Author: Alan Garny '' Date: Mon Dec 3 11:25:21 2012 +0100 Some minor cleaning up. commit 0069a3ce4f71ead3f471c7da61ed95b74ab42be9 Author: Alan Garny '' Date: Mon Dec 3 11:09:18 2012 +0100 Added a plugin to support QtPropertyBrowser. commit cfc97e8e00cde97fd18480466cddcb8dedc67042 Author: Alan Garny '' Date: Fri Nov 30 17:23:23 2012 +0100 Replaced our QwtSlider '(for' the delay between data 'points)' with a QScrollBar in our simulation plugin '(#112.' commit 22a5e2c82b30d60cb6b15a6abda1d553a42a822d Author: Alan Garny '' Date: Fri Nov 30 13:23:55 2012 +0100 Some minor refactoring. commit ed687a780aa2ad7a0fb8a09a4b80d9c19fbf6d04 Author: Alan Garny '' Date: Fri Nov 30 10:11:24 2012 +0100 Minor improvement to our progress bar in our Simulation plugin '(#112).' commit 8b6537af959fd41c0bd5078646eff6ccc8768e3e Author: Alan Garny '' Date: Thu Nov 29 20:34:37 2012 +0100 Made sure that QtPropertyBrowser can be used on Windows '(#118).' commit 116b326e9a3460572f6855dea112a2c98ca97828 Author: Alan Garny '' Date: Thu Nov 29 18:52:20 2012 +0100 Some work on setting up our property editor '(#112).' commit 86796b35e95b9818cde28f8c94f9d057c99d005b Author: Alan Garny '' Date: Thu Nov 29 18:32:16 2012 +0100 Minor cleaning up. commit 3f585920382e209e69d7071dfa7cdefadbddd78b Author: Alan Garny '' Date: Thu Nov 29 18:21:07 2012 +0100 Trying out QtPropertyBrowser. commit af95a7e0f11e0ad93169fa1f9a2d13c83cbc4ea7 Author: Alan Garny '' Date: Thu Nov 29 16:58:36 2012 +0100 Some minor cleaning up. commit 8b8203e470431704a72b7af2c073cfcaea4d1873 Author: Alan Garny '' Date: Thu Nov 29 16:14:42 2012 +0100 Finally got QtPropertyBrowser to build as a plugin '(closes' '#118).' There are likely going to be a few minor changes to the 'widget'\''s' source code to get access to the classes we will need. commit ac9fc5cb79818914bbb1de358302a5edc22c8bc5 Author: Alan Garny '' Date: Thu Nov 29 10:03:02 2012 +0100 Fixed a former omission '(closes' '#119).' commit f56d2e0061d6e8a6ca838491a53e207d3b64fb7c Author: Alan Garny '' Date: Wed Nov 28 16:04:22 2012 +0100 Some work on adding support for QtPropertyBrowser '(#118).' commit 3dcd09fbaea25a05cf5c5ae0b4c7726b6c138140 Author: Alan Garny '' Date: Wed Nov 28 16:01:19 2012 +0100 Some minor cleaning up. commit f61779a1572f7514dce80f093329d2624d0e9dfd Author: Alan Garny '' Date: Wed Nov 28 15:46:18 2012 +0100 Minor update to the developer documentation. commit 1bd185b8a6d090caf3bb81157fe06fe61aa30f55 Author: Alan Garny '' Date: Wed Nov 28 14:41:50 2012 +0100 Some minor refactoring. commit 0cd90ccacdee7721036711f3e24c1398cd16ee5e Author: Alan Garny '' Date: Wed Nov 28 14:31:29 2012 +0100 Improved SingleCellSimulationViewProgressBarWidget '(#112).' commit 60c5a44ce23eb96592b32a03cf520aa22becccd0 Author: Alan Garny '' Date: Wed Nov 28 14:20:48 2012 +0100 Some minor cleaning up. commit 5e5b5094ac9b783f919f5a2a750964749745e286 Author: Alan Garny '' Date: Tue Nov 27 18:34:16 2012 +0100 Some work on our solvers widget and our new parameters widget '(#112).' commit bc533ddddd10bd1d78faed0cf2f26eb43f6f130b Author: Alan Garny '' Date: Tue Nov 27 18:14:01 2012 +0100 Refactoring PropertyEditorWidget a bit as part of our work on '#112.' commit b30d7efd7566aad77a3888ac2b5f2a07d3b308ae Author: Alan Garny '' Date: Tue Nov 27 17:48:23 2012 +0100 Some work on our solvers widget '(#112).' commit cdd7a785265ae1d3a0cf17f659611b99a9aa8aa9 Author: Alan Garny '' Date: Tue Nov 27 16:39:37 2012 +0100 Minor improvement to our CellMLAnnotationView plugin. commit e74cd0bd0b0d271e12bbcbfb9a199d774c20f6a4 Author: Alan Garny '' Date: Tue Nov 27 16:30:04 2012 +0100 $'\020Minor' cleaning up. commit 913adb675309faa0cd8a1b671f9762d78b8159cb Author: Alan Garny '' Date: Tue Nov 27 16:18:38 2012 +0100 Some minor cleaning up. commit 300d3ac7f28071c3f8ada850c46d98bab23eab35 Author: Alan Garny '' Date: Mon Nov 26 20:00:25 2012 +0100 New snapshots. commit 634284a5c20a3e84646d3535b67db755c4657163 Author: Alan Garny '' Date: Mon Nov 26 19:49:46 2012 +0100 Addressed the fact that semanticSBML now generates identifiers.org URIs and added some safeguards too '(closes' '#117).' commit 90321e45707a9561a023ac3c2c685ee43ad11309 Author: Alan Garny '' Date: Mon Nov 26 17:35:54 2012 +0100 Some work on our solvers widget '(#112).' commit bfc613accc621e187c0951aa2803d36b780cf79c Author: Alan Garny '' Date: Mon Nov 26 16:19:06 2012 +0100 Some work on our solvers widget '(#112).' commit cb14bf881e9843c80f21b861340ac5e5a36dbc19 Author: Alan Garny '' Date: Mon Nov 26 16:09:37 2012 +0100 Some minor cleaning up. commit 9c8eab3185631c6bdec13a756c0f459ee2ef69a5 Author: Alan Garny '' Date: Mon Nov 26 15:56:35 2012 +0100 Some minor refactoring. commit 98ccbb30cfabadf0e853d91e28c592c50ff67f0d Author: Alan Garny '' Date: Mon Nov 26 15:12:32 2012 +0100 Some minor refactoring. commit f8f2006f84e7f2be107781eb25f13e1fa7c41b5a Author: Alan Garny '' Date: Mon Nov 26 14:35:44 2012 +0100 Started work on our solvers widget '(#112).' commit 1c22d98235a1e6f28e12f6e8a8f6d84d1cfe657f Author: Alan Garny '' Date: Mon Nov 26 13:37:16 2012 +0100 Some minor refactoring and cleaning up. commit ba414e07e171a8f128f57762dce35884bca66e51 Author: Alan Garny '' Date: Mon Nov 26 13:22:31 2012 +0100 Some minor refactoring. commit f748660e3463fca0039609c7f4e21b991119f149 Author: Alan Garny '' Date: Mon Nov 26 13:04:26 2012 +0100 Determine the type of solvers that are required for a model '(#112).' commit f39ab8c85e05ec7d31dc08f36a2a6bbc72ca7df0 Author: Alan Garny '' Date: Mon Nov 26 11:17:53 2012 +0100 Some minor refactoring. commit aa3499a13830fa3484a00ab31e14d486514d735f Author: Alan Garny '' Date: Sat Nov 24 16:28:00 2012 +0100 Some minor refactoring. commit e9d06901e17a3c1937c18ecc83ca06a499ae6dfc Author: Alan Garny '' Date: Sat Nov 24 15:09:31 2012 +0100 Quite a bit of refactoring with regards to the use of theme colours. commit a5c9e85f6fa237755b7df76318673815681f5cfa Author: Alan Garny '' Date: Sat Nov 24 14:36:55 2012 +0100 Created our own very simple progress bar for our SingleCellSimulationView plugin '(closes' '#116).' Also fixed a couple of theme issues. commit e49317a4000e006ef3d704dd4ff18a910019ad5f Author: Alan Garny '' Date: Sat Nov 24 14:09:17 2012 +0100 Some minor cleaning up. commit 77da0587c688b369534a41007b9a1e742a9ce80f Author: Alan Garny '' Date: Sat Nov 24 06:04:32 2012 +0100 Minor improvement to our simulation plugin '(#112).' commit ec268993577b1f37508f27ceb1a784342dd3826a Author: Alan Garny '' Date: Sat Nov 24 05:52:03 2012 +0100 Argh, Clang 'doesn'\''t' seem to be able to switch optimisations off for only one function. Otherwise, I did previously mention that 'QThread::usleep()' is not reliable on at least Windows, but 'QThread::msleep()' is '(and' also is on Linux and OS 'X),' so... we now us that instead for the delay between data points while running a simulation '(#112).' commit aba3dd579f4c004c5241a6a6e0d3b6354e251e9e Author: Alan Garny '' Date: Sat Nov 24 04:31:20 2012 +0100 To use 'QThread::usleep()' for the delay between data points while running a simulation '(#112)' 'wasn'\''t' a good approach. It just 'doesn'\''t' work '(and' can even hang 'OpenCOR)' on Windows. So, instead, we now compute an exponential to ''\''waste'\''' time. Note: the current code works on both Windows and Linux, but is likely not going to work on OS X yet. commit 2da7bf6ee1cd950e95d9b55f29563a06aacac0da Author: Alan Garny '' Date: Sat Nov 24 04:02:00 2012 +0100 To use 'QThread::usleep()' for the delay between data points while running a simulation '(#112)' 'wasn'\''t' a good approach. It just 'doesn'\''t' work '(and' can even hang 'OpenCOR)' on Windows. So, instead, we now compute an exponential to ''\''waste'\''' time. Note: the current code works on Windows, but is likely not going to work on Linux and OS X since a '#pragma' needs to be found for those platforms. commit 1891f57e737138ac87c137c1af1f75457d052391 Author: Alan Garny '' Date: Fri Nov 23 19:13:03 2012 +0100 Improved things when it comes to the delay between data points while running a simulation '(#112).' commit 6d0e723faed32a292787ae4390042a99bc705322 Author: Alan Garny '' Date: Fri Nov 23 18:45:31 2012 +0100 Some minor cleaning up. commit 0471f1762e900baab79375c47c1f8404a06c50c5 Author: Alan Garny '' Date: Fri Nov 23 18:21:34 2012 +0100 A bit of refactoring for simulation plugin '(#112).' commit b1590ec288ee262f1edcb88eff3fb412de792f73 Author: Alan Garny '' Date: Fri Nov 23 17:31:51 2012 +0100 Some minor cleaning up. commit 4b201cc5a6c76c1ba8b374b8dd82127e26abffb6 Author: Alan Garny '' Date: Fri Nov 23 17:28:37 2012 +0100 Can now change the delay between data points while running a simulation '(#112).' commit d203175b5514bf1d9f01be57590a825584e3eb5b Author: Alan Garny '' Date: Fri Nov 23 17:19:43 2012 +0100 Done with the delay in the plotting of data points '(#112).' commit cabe67f301fe920bd04f92f5b014fe6f768bdf93 Author: Alan Garny '' Date: Fri Nov 23 16:41:47 2012 +0100 Some work on implementing a delay in the simulation data output '(#112).' commit d129f47552a03f71a92161a646c551dab71d0b1f Author: Alan Garny '' Date: Fri Nov 23 16:34:19 2012 +0100 Some work on implementing a delay in the simulation data output '(#112).' commit cd2220576e76580b1e6b23b9954df21ee6c71895 Author: Alan Garny '' Date: Fri Nov 23 16:07:55 2012 +0100 Some work on implementing a delay in the simulation data output '(#112).' commit c865646a8fb73f98e9b348ab44b49b92ed23ca5c Author: Alan Garny '' Date: Fri Nov 23 14:44:29 2012 +0100 Make sure that file tab icons are up-to-date when switching modes/views. Also some minor cleaning up. commit 973a21080a518a1a2861c30f105bf7e0b50eae25 Author: Alan Garny '' Date: Fri Nov 23 12:54:36 2012 +0100 Starting some work on resetting the file tab icons after having changed modes/views. commit 254c4314d3f503115939e59ca6e920d0950622b0 Author: Alan Garny '' Date: Fri Nov 23 11:15:50 2012 +0100 'Don'\''t' show the simulation progress '(in' a file 'tab)' for the current simulation '(#112).' commit 766d0f106beac4b5dae66a57397bdbd408b2ecd7 Author: Alan Garny '' Date: Thu Nov 22 19:00:05 2012 +0100 Minor improvement to our simulation plugin '(#112).' commit f5d0a13c1644c17eabf9b90660709964709e7b69 Author: Alan Garny '' Date: Thu Nov 22 18:48:55 2012 +0100 Minor improvement to our simulation plugin '(#112).' commit fb26cb2daa7ae8e80a8e5251cdd765c468a36702 Author: Alan Garny '' Date: Thu Nov 22 18:43:06 2012 +0100 Done with keeping track of a simulation progress in a file tab '(#112).' commit 3972161c67ff84cbbde6fdeb580b94611780d20c Author: Alan Garny '' Date: Thu Nov 22 17:39:17 2012 +0100 Some minor cleaning up. commit fa82e2d99a1f92b1c796ec64ba333ecf06cfc085 Author: Alan Garny '' Date: Thu Nov 22 17:16:08 2012 +0100 Updated jQuery from version 1.8.2 to version 1.8.3. commit 04361dc11f3998d7dfa25afbe5a725a996ae9037 Author: Alan Garny '' Date: Thu Nov 22 17:08:25 2012 +0100 Fixed a small issue with our simulation plugin '(#112).' commit 0ff1433332eff09095e54fea5924905fcd9e1135 Author: Alan Garny '' Date: Thu Nov 22 17:03:55 2012 +0100 Some minor cleaning up in our simulation plugin '(#112).' commit 0103eb5736032d58b0d707c6efdd37e68ec42a96 Author: Alan Garny '' Date: Thu Nov 22 16:55:45 2012 +0100 Some minor cleaning up in our simulation plugin '(#112).' commit 2c029bae128fb9a5cfd9edf83e2677dd533ac384 Author: Alan Garny '' Date: Thu Nov 22 16:27:51 2012 +0100 Minor improvement '(#112).' commit 723e741c0b31473e203a7a4b34142e54a099d810 Author: Alan Garny '' Date: Thu Nov 22 15:48:25 2012 +0100 Minor fix to our simulation plugin '(#112).' commit efee95684e3692dee766c3effd59af435b8025bb Author: Alan Garny '' Date: Thu Nov 22 15:39:42 2012 +0100 Some work towards showing the progress of a simulation in its corresponding file tab '(#112).' commit 660f74e67fdb83b9867f85240b61efcac8c92dbe Author: Alan Garny '' Date: Wed Nov 21 17:02:41 2012 +0100 Minor cleaning up. commit 30b03bd19b2cfc591d1fc8dd22e7446f17eef4f6 Author: Alan Garny '' Date: Wed Nov 21 16:58:53 2012 +0100 Minor cleaning up. commit 213f48442d93220e33b99a19567fc265557d1669 Author: Alan Garny '' Date: Wed Nov 21 15:52:29 2012 +0100 Minor cleaning up. commit 33e5569866b3b078094e422a1bafded8ddda6150 Author: Alan Garny '' Date: Wed Nov 21 15:42:03 2012 +0100 Some minor cleaning up. commit 201b5fb31378f55af35c87ba2cf478adce509da5 Author: Alan Garny '' Date: Wed Nov 21 13:56:17 2012 +0100 Can now run several single cell simulations at once since each of them runs in its own thread '(#112).' commit 1aa0804107910ebc9c5cacdf4ebbeddaba68aee5 Author: Alan Garny '' Date: Wed Nov 21 10:45:49 2012 +0100 Some minor cleaning up and refactoring. commit 3434323e0e5775b7743dad18e61da4a651515f59 Author: Alan Garny '' Date: Wed Nov 21 10:14:53 2012 +0100 Some minor cleaning up. commit b6847c34c62a5965a08ce6462163dec92a6a9ba4 Author: Alan Garny '' Date: Tue Nov 20 17:40:08 2012 +0100 Simplified our simulation framework and got the threading to work properly as a result of it '(#112).' '(To' keep pressing F9 on Windows and Ubuntu 32-bit would have eventually resulted in a core 'dump.)' commit 74d832debef91e60a4f85e2be4ba95e00732de1d Merge: 3c8dad5b2 ddae8ae2c Author: Alan Garny '' Date: Tue Nov 20 16:52:02 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3c8dad5b2c49a844a17785298291038d941ca5c0 Author: Alan Garny '' Date: Tue Nov 20 16:49:59 2012 +0100 Slight improvement to our simulation class '(#112).' commit ddae8ae2cbcc9241ee2ad78b12ced5072609f3e1 Author: Alan Garny '' Date: Tue Nov 20 15:31:16 2012 +0100 Minor correction. commit 354a86d2b34a7127a227dd14ab0dd6a5522dc9c8 Author: Alan Garny '' Date: Tue Nov 20 13:52:33 2012 +0100 Minor correction. commit a0aa3b5b6ab806c55f7b4bbb1228f76cb37b7ef9 Author: Alan Garny '' Date: Tue Nov 20 13:42:12 2012 +0100 Minor improvement to our simulation worker '(#112).' commit b400daf6f3dd852aaebced13f2d4ffb7bb122cbc Merge: c1a01ffe6 0a079045e Author: Alan Garny '' Date: Tue Nov 20 13:15:32 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit c1a01ffe63f96084c8a08e31619c6b2c7585e860 Author: Alan Garny '' Date: Tue Nov 20 13:15:02 2012 +0100 Minor correction to a comment. commit 0a079045ecfd0020d6693f3ecd3d319aea558c17 Author: Alan Garny '' Date: Mon Nov 19 20:01:00 2012 +0100 New snapshots. commit 70083e1ecf55c848552548c840ae9bc6fdd84943 Author: Alan Garny '' Date: Mon Nov 19 18:07:26 2012 +0100 Some minor cleaning up. commit b3c634cf9f80e6d3ed354b2f8dd20b4be51d7c38 Author: Alan Garny '' Date: Thu Nov 15 18:13:31 2012 +0100 Minor GUI improvement to our SingleCellSimulationView widget '(#112).' commit 2ce2bc4af824db9180e365ca50faf51f2ee70f74 Author: Alan Garny '' Date: Thu Nov 15 18:03:28 2012 +0100 Some minor cleaning up '(#112).' commit 6a913439228000d6e78e6c70ead28a755e17493c Author: Alan Garny '' Date: Thu Nov 15 17:46:59 2012 +0100 Forgot the final simulation progress '(#112).' commit 0354f0fe549e3483ceb4f19dd78a3d41ae85985b Author: Alan Garny '' Date: Thu Nov 15 17:27:30 2012 +0100 Can now get the elapsed time for a simulation '(#112).' Also some minor cleaning up. commit 894309d78bde1b1899848b1fd70b6462ed697bfd Author: Alan Garny '' Date: Thu Nov 15 16:58:57 2012 +0100 Make sure that the simulation settings are sound and if not then let the user know about it '(#112).' commit 7c60facbf5d65e2bd385b5a3481b85d7a2b0539b Author: Alan Garny '' Date: Thu Nov 15 15:11:13 2012 +0100 Some minor cleaning up. commit aca513a1d1f6ba3d44d174861fc80bef2a503195 Author: Alan Garny '' Date: Thu Nov 15 14:59:30 2012 +0100 Added a few safeguards '(#112).' commit 22356b0d05e32d7c3b25e4eb5a5f68fc9f8e8493 Author: Alan Garny '' Date: Thu Nov 15 14:36:16 2012 +0100 Can now keep track of the progress of a simulation '(#112).' commit 57b3a61debc301583d5891da3cfef86adbbb3132 Author: Alan Garny '' Date: Thu Nov 15 14:35:37 2012 +0100 Some minor cleaning up. commit 75fd3dc0ec985e2bdd4e5d02cefedbfe6875fa5e Author: Alan Garny '' Date: Thu Nov 15 14:03:26 2012 +0100 Done with our threaded simulation worker '(#112).' commit 37abaf3852750214627722660fbcd07b3d1f6c55 Author: Alan Garny '' Date: Wed Nov 14 17:32:23 2012 +0100 Cleaning up our SingleCellSimulationView plugin now that we are ''\''properly'\''' working on it '(#112).' '(This' means that right now we 'can'\''t' run any simulation at 'all...)' commit ab2d55c4f57d9ea413f387277f791e69b75ec518 Author: Alan Garny '' Date: Wed Nov 14 16:52:02 2012 +0100 Skeleton for our simulation worker '(#112).' commit 9956393f262795055aa96aa16f8c460ca4bd3a69 Author: Alan Garny '' Date: Wed Nov 14 15:37:51 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit c48a8298ea603d28ab40567a30795a7a3eb6a6db Author: Alan Garny '' Date: Wed Nov 14 14:57:20 2012 +0100 Fixed '(as' much as 'possible)' an issue with our Plugins window on OS X. The issue was that some dependencies and/or descriptions were not fully visible. Now, things are better, but there are still some cases where things look a bit funny. commit 7e93ddf6b939ac0aa66eb31463add718d3e101c6 Author: Alan Garny '' Date: Wed Nov 14 13:50:18 2012 +0100 Some minor cleaning up. commit 006464e116798cd1bddd8c6556300bd89df87985 Author: Alan Garny '' Date: Wed Nov 14 13:43:42 2012 +0100 Create the correct editor for a property '(#112).' commit 6615951179de4f61f65b8c03d5d670007574f59a Author: Alan Garny '' Date: Wed Nov 14 11:12:51 2012 +0100 Missed one UTF8-related thingy. commit 483e4b4b15f4f0ebfb83fc3058c9f3b1633d5a8c Author: Alan Garny '' Date: Wed Nov 14 11:09:05 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit b66db3c3943cf15dde30b7ca0e48a809ccb04634 Author: Alan Garny '' Date: Tue Nov 13 17:05:48 2012 +0100 $'Hmm\342\200\246' processing pending events while running a simulation makes things very slow on Linux '(and' probably Windows 'too)' while 'it'\''s' ''\''fine'\''' on OS X. commit cb6ada3da63d997c6798a929d0fbadfaa7675730 Author: Alan Garny '' Date: Tue Nov 13 17:00:55 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit 305358ad43cc72bf307c5fb2d1f27f48f7ec04a3 Author: Alan Garny '' Date: Tue Nov 13 16:16:25 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' Keep track, within an OpenCOR session, of the 'user'\''s' settings for a given model. commit f59186c152255622c3230fc613036a42df1812fc Author: Alan Garny '' Date: Tue Nov 13 14:53:33 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit beca35cbcfd65dd8aa6e7733e953e6c757e7f4aa Author: Alan Garny '' Date: Tue Nov 13 14:21:53 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' Now uses the 'user'\''s' settings for the starting and ending points, as well as the point interval. commit 5af4fe602e5d06e4894945fbe90b98369d5b079d Author: Alan Garny '' Date: Mon Nov 12 19:28:01 2012 +0100 New snapshots. commit 3e85a142001edd2d73ae2dfb463c9ddc4b4ddd7f Author: Alan Garny '' Date: Mon Nov 12 19:25:23 2012 +0100 Fixed some French plugin descriptions. '(I' thought I was done with the encoding of some files, but I guess I was still be 'wrong!)' commit c3a5571fff0d182f66d95781e740d087cee9642c Author: Alan Garny '' Date: Mon Nov 12 19:07:06 2012 +0100 Fixed some French plugin descriptions. '(I' thought I was done with the encoding of some files, but I guess I was and might still be 'wrong!)' commit 142d85e8e6107214eede9b357dc564286110f87b Author: Alan Garny '' Date: Mon Nov 12 19:02:03 2012 +0100 Fixed some French plugin descriptions. '(I' thought I was done with the encoding of some files, but I guess I was and might still be 'wrong!)' commit 2b30f6ec9bd3a8709fdb33ac09a478bdf633db07 Author: Alan Garny '' Date: Mon Nov 12 18:49:05 2012 +0100 Fixed a small issue with the initialisation of the locale when starting OpenCOR. commit 7dbcd3ff44bd18a6f76f02d8aee6884b3abb85df Author: Alan Garny '' Date: Mon Nov 12 18:35:52 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' Can now retrieve the variable of integration and thus determine the unit to be used for our simulation information. Also some minor improvements here and there. commit 23ff103f8754ef24ff25185050cb72ee14c88c83 Author: Alan Garny '' Date: Mon Nov 12 16:27:33 2012 +0100 Some minor cleaning up. commit 7ab04b142044b670631ccc928a1029340c3e3063 Author: Alan Garny '' Date: Mon Nov 12 13:35:16 2012 +0100 A small hack to get, on Windows at least, 'PropertyEditorWidget->loadSettings()' to work properly. commit cc975049c77cb680e56ca6f6a9768968995eca84 Author: Alan Garny '' Date: Sun Nov 11 15:31:58 2012 +0100 Minor cleaning up. commit 6ef27d6ac5f5d3a56a30aec23693a3ebcb29f866 Author: Alan Garny '' Date: Sun Nov 11 02:24:11 2012 +0100 Addressed an issue with regards to plugins using a format version which is not the same as the one used by OpenCOR. commit b93d858e73b8becd805210e4ed5c32a80aee69d1 Author: Alan Garny '' Date: Sun Nov 11 01:46:47 2012 +0100 Minor cleaning up. commit d5090a958e819d1fe24611d4246d1d4584dc8f52 Author: Alan Garny '' Date: Sun Nov 11 01:41:29 2012 +0100 Minor cleaning up. commit d8b627a051eec20bc7399e870acbab18fc941b54 Author: Alan Garny '' Date: Sun Nov 11 01:35:51 2012 +0100 Minor cleaning up. commit 795cd45e5bc6b0f9e779319dcc45cd995803d3ff Author: Alan Garny '' Date: Sun Nov 11 01:15:33 2012 +0100 Minor cleaning up. commit 00e63d924fef1f275b9a9cab1f73fa0eaba80c30 Author: Alan Garny '' Date: Sun Nov 11 01:01:24 2012 +0100 Minor cleaning up. commit 2f5005ce19b42278ea384ba806ad0f6c44fcca26 Author: Alan Garny '' Date: Fri Nov 9 18:35:24 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit 05d436493b527d49a4e188f5cdfc2f6c0128f36a Author: Alan Garny '' Date: Fri Nov 9 17:41:12 2012 +0100 Some work on our SingleCellSimulation plugin '(#112).' commit 3c88d65153bc83dc462e3b07cc24678fc6774a62 Author: Alan Garny '' Date: Thu Nov 8 18:18:58 2012 +0100 Minor improvement to FileBrowserWidget. commit d596fa52c72df74b6c3f0d633d06ebea7e36db3b Author: Alan Garny '' Date: Thu Nov 8 18:12:14 2012 +0100 Some work on PropertyEditorWidget '(#112).' Also some minor cleaning up. commit 34b0decff94f212f876dcf922c8ce397fbad5d89 Author: Alan Garny '' Date: Thu Nov 8 17:40:50 2012 +0100 Prevent some QTreeView headers from being moved. commit de5b036bb08733e0f630c36963ed60f6674fb56b Author: Alan Garny '' Date: Thu Nov 8 17:35:08 2012 +0100 Minor improvement to CollapsibleWidget. commit 270a63d5541cb56c2253e44d8a93d3e18335d213 Author: Alan Garny '' Date: Thu Nov 8 17:30:40 2012 +0100 A minor fix for PropertyEditorWidget '(#112).' commit f6a3ba4a7da55829fbabe2e3023d6fe2458fbfc6 Author: Alan Garny '' Date: Thu Nov 8 17:28:34 2012 +0100 Implemented 'load/saveSettings()' for CollapsibleWidget and make use of them in SingleCellSimulation '(#112).' commit d246e76da4fb7da0bddffd1759ff9917a854e747 Author: Alan Garny '' Date: Thu Nov 8 17:05:30 2012 +0100 Improved CollapsibleWidget. commit fbe92afda74ac020ef5ec0e212761c7c113b6520 Author: Alan Garny '' Date: Thu Nov 8 16:45:11 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 37fac51e933bcb53e03a31df50e97342bfd76537 Author: Alan Garny '' Date: Thu Nov 8 16:25:21 2012 +0100 Simplified CollapsibleWidget. commit a0ba94e3d8747d992e95116c8124e568e8545f0b Author: Alan Garny '' Date: Thu Nov 8 16:16:57 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 54de38a77dc648e75171e477e4446b7df4bf9c50 Author: Alan Garny '' Date: Thu Nov 8 14:33:29 2012 +0100 Improved CollapsibleWidget. commit 7063cc64b1f60df658a14c72680b22b9543920ae Author: Alan Garny '' Date: Thu Nov 8 14:06:33 2012 +0100 Minor update to our developer documentation. commit c1d9a2483f20b97f5054b5018a4e7702991e9f13 Author: Alan Garny '' Date: Thu Nov 8 13:54:54 2012 +0100 Address a focusing issue as well as did some work on PropertyEditorWidget '(#112).' commit 0601adc5baa62243d1d327488d4c6890a4ad14e6 Author: Alan Garny '' Date: Thu Nov 8 13:04:22 2012 +0100 Some minor cleaning up. commit 851fdb6f7db57e76112ad0bacc9a010768347891 Author: Alan Garny '' Date: Thu Nov 8 11:56:29 2012 +0100 Minor corrections '(#112).' commit cb48bebb2ffc97724cde782cda5b708a6e6f6873 Author: Alan Garny '' Date: Thu Nov 8 11:49:23 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 1a4db68ce351303f78faa7082f3fd52374867fa9 Author: Alan Garny '' Date: Wed Nov 7 17:51:37 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit d537ea2e63ae33b5aaf7eee8120f53e8634ee716 Author: Alan Garny '' Date: Wed Nov 7 16:36:21 2012 +0100 Some minor cleaning up. commit 4c83ccfb7e8dd0a8645d0e124c8ca259500ffe1e Author: Alan Garny '' Date: Wed Nov 7 15:17:06 2012 +0100 Quite a bit of work on PropertyEditorWidget '(#112).' commit f28753075fcd4d6ab7ee67c9c34b701a83089b3a Author: Alan Garny '' Date: Wed Nov 7 08:32:07 2012 +0100 Minor update to the 'website'\''s' downloads page. commit b8a1e504c51237b873cd8654f27475dfcba13430 Author: Alan Garny '' Date: Tue Nov 6 18:03:29 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 0858053afbf7572c485f6401e253d356bf033bed Author: Alan Garny '' Date: Tue Nov 6 17:19:01 2012 +0100 Minor comment. commit c6c4f717b2dc3d2a6d06300a834ebe2f2202a868 Author: Alan Garny '' Date: Tue Nov 6 17:09:18 2012 +0100 Some cleaning up for PropertyEditorWidget '(#112).' commit fcc232fd4db8b1e56d36ac35fe1af6a621ba0bcd Author: Alan Garny '' Date: Tue Nov 6 16:27:29 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit f19b282cc36e49dcaaf1898150225eb317c1810c Author: Alan Garny '' Date: Tue Nov 6 15:51:24 2012 +0100 Fixed a small focus issue with our RawCellMLView plugin. commit de6d5644bae866cfe741bbcef59783123e14b55d Author: Alan Garny '' Date: Tue Nov 6 15:29:19 2012 +0100 Fixed a small UTF-8 issue. commit 882c7255d096ec255bfd3fdf45b017d64707b5b6 Author: Alan Garny '' Date: Tue Nov 6 14:47:29 2012 +0100 Changed the encoding of some files '(thus' making it easier to edit using Qt Creator on OS 'X).' commit e81d7777b4a980dca38ea94a69523aa78771fed9 Author: Alan Garny '' Date: Tue Nov 6 11:05:46 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit a177e400cb358e7acdbcb362c9721b46cd65cd50 Author: Alan Garny '' Date: Tue Nov 6 10:20:13 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit f368d4da6f93e2dc734cb394c318a2145a4cd843 Author: Alan Garny '' Date: Tue Nov 6 09:41:43 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit b179769ff06e1d36df3bee62c24689d6b7c1cf42 Author: Alan Garny '' Date: Mon Nov 5 18:40:27 2012 +0100 New snapshots. commit 74d3c7a87b269c7142c5cf4c2bd4f942571f53da Author: Alan Garny '' Date: Mon Nov 5 17:57:56 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 5e2be0e411037bbaa02d5ccc727c983dea84c736 Author: Alan Garny '' Date: Mon Nov 5 17:42:05 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 5863f53b31b692481a1ed8a41f22a5c978933066 Author: Alan Garny '' Date: Mon Nov 5 17:20:01 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 506b7adfff8cb455f9ed7b2701be17ec7ace4210 Author: Alan Garny '' Date: Mon Nov 5 16:29:05 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 5eab11242d6420eb58aee4354a9e1481e2d74c54 Author: Alan Garny '' Date: Mon Nov 5 15:49:28 2012 +0100 Minor cleaning up. commit f22d986ad0bf7a10c3e8c9080b698880c5bcacb3 Author: Alan Garny '' Date: Mon Nov 5 12:54:37 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 1f01debc6ef8cbfddb1ac047346953d9ca316256 Author: Alan Garny '' Date: Mon Nov 5 11:32:33 2012 +0100 Some minor cleaning up. commit d8d3898de9a8c62c5d07946c1d5fbbd88be49948 Author: Alan Garny '' Date: Mon Nov 5 11:22:38 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 3ec97e282abf9673119a9bdeba8bde072bd31bf5 Author: Alan Garny '' Date: Mon Nov 5 10:48:28 2012 +0100 Some minor cleaning up. commit 073ad3f729e843b2ea5b9810159fc37bfbe20e51 Author: Alan Garny '' Date: Fri Nov 2 17:45:18 2012 +0100 Some minor cleaning up. commit 97f9a20a17bfbf8be7d0b2cc99af8bac68d4febd Author: Alan Garny '' Date: Fri Nov 2 17:04:57 2012 +0100 Some work on PropertyEditorWidget '(#112).' commit 1cd4f2388f1228681f93ee568fe65c0f9099da47 Author: Alan Garny '' Date: Fri Nov 2 17:03:40 2012 +0100 Some minor cleaning up. commit a5a64651d9a8bc02b0843a0ebb21d0147adc8d47 Author: Alan Garny '' Date: Fri Nov 2 11:47:16 2012 +0100 Slight updates to our documentation now that Ubuntu 12.10 is out and that we support it. commit d62a285b5a4b5fbf56d19f80c5620303ffe1a812 Author: Alan Garny '' Date: Thu Nov 1 17:08:08 2012 +0100 Upgraded to version 1.12 of the CellML API. commit b6cbd14a6e52f9fdae0fb664a61d42d8f03f8cf5 Author: Alan Garny '' Date: Thu Nov 1 16:19:41 2012 +0100 Fixed the issue related to the saving of the SingleCellSimulation 'plugin'\''s' settings '(closes' '#115).' commit eea6bd334b8ad1df8ad9a18a2a1f40ad20fe03d9 Author: Alan Garny '' Date: Thu Nov 1 15:44:21 2012 +0100 Some minor cleaning up. commit 215706ed81053f50e58d4135a699aa91a7461558 Author: Alan Garny '' Date: Thu Nov 1 15:36:47 2012 +0100 Some minor cleaning up. commit 65240d16f9ab8d78a182a5abb74b2a07eaa6af4e Author: Alan Garny '' Date: Thu Nov 1 14:56:40 2012 +0100 Fixed the issue with the 'borderColor()' method. The issue was that 'borderColor()' used to be declared as a ''\''normal'\''' function '(in' 'coreutils.cpp|h),' but its use 'couldn'\''t' be resolved when used from CommonWidget. The only difference with other classes which also use coreutils methods seems to be that CommonWidget is not a Qt-based class. 'It'\''s' not all clear to me, but all I know is that the method 'can'\''t' be resolved at link time, $'so\342\200\246' I moved 'borderColor()' to CommonWidget and made it static so that it can be called from anywhere, and it works fine even though I 'don'\''t' really like it '(borderColor()' really ought to be a ''\''normal'\''' 'function).' commit 798cffc43a36f756399889d4dc452052ab032a6a Author: Alan Garny '' Date: Thu Nov 1 12:29:49 2012 +0100 Minor comment. commit f95e80e6a085410a4fa4d276d1bac29bcb575214 Author: Alan Garny '' Date: Thu Nov 1 11:19:48 2012 +0100 Minor comment. commit 1864608e51b9f92dfa72a5d78f9601f3fb8181ee Author: Alan Garny '' Date: Wed Oct 31 21:06:52 2012 +0100 Minor improvement to our 'newLineWidget()' method. commit 4cf41c30def24dd7fee75e164c3c3a5f2da44905 Author: Alan Garny '' Date: Wed Oct 31 20:54:32 2012 +0100 Minor cleaning up. commit 78a0989c0477b312890f5998f06fcc640ab683fe Author: Alan Garny '' Date: Wed Oct 31 20:32:22 2012 +0100 Minor comment. commit c06d580b1c6eb55dd975402d1403a5469649e5d6 Author: Alan Garny '' Date: Wed Oct 31 20:10:18 2012 +0100 Got our new way retrieving the colour of a border to work. 'It'\''s' a bit '(lot?)' of a hack, but no other 'choice?...' commit 3d4f5bf117df7dcb275724bc878ae7058586babf Author: Alan Garny '' Date: Wed Oct 31 19:26:28 2012 +0100 $'\020Slight' fix for Windows and Linux. commit de23014d1334c78904170ab83b2bd4d1187aaa8c Author: Alan Garny '' Date: Wed Oct 31 19:18:00 2012 +0100 $'\020Slight' fix for Windows and Linux. commit c85504147acccc1fb47f9bea7938cc7738f84b9b Author: Alan Garny '' Date: Wed Oct 31 19:12:41 2012 +0100 Various changes which should never have been committed in one big 'time!' commit 768fcb450967a93206d57ff2b35b652371ee747d Author: Alan Garny '' Date: Wed Oct 31 15:08:34 2012 +0100 Some minor cleaning up. commit a9dbc501ac00c1986b9337f0f6042d1bf85d04be Author: Alan Garny '' Date: Wed Oct 31 14:43:02 2012 +0100 Some work on PropertyEditorWidget. commit d1b0956f3645ff519877aee2c24747e9e1561560 Author: Alan Garny '' Date: Wed Oct 31 14:39:27 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 8061ae1497447da0a226f33b6607e0162d11a748 Author: Alan Garny '' Date: Wed Oct 31 14:00:37 2012 +0100 Some work on PropertyEditorWidget. commit 63c0a8f981ac413325c953e3b34cf7df41b7966e Author: Alan Garny '' Date: Wed Oct 31 11:49:36 2012 +0100 Minor Windows-related fix as a result of removing a .ui file '(#114).' commit 8926ac4290016d5e005d8009b8d0c7daf5175ab3 Author: Alan Garny '' Date: Wed Oct 31 11:21:52 2012 +0100 Forgot to remove a .ui file '(#114).' commit e398e18f9d53107dfb2a8118c366d85caf4dc9dc Author: Alan Garny '' Date: Wed Oct 31 11:21:29 2012 +0100 Some refactoring which consisted of removing a .ui file '(#114).' commit c6cbf0bff1848dc5267a6c3c230d4383c67d7e8f Author: Alan Garny '' Date: Wed Oct 31 11:09:23 2012 +0100 Some refactoring which consisted of removing a .ui file '(#114).' commit 74676df3a1d2ead2a438ea4b1253385821229762 Author: Alan Garny '' Date: Wed Oct 31 10:44:41 2012 +0100 Some minor cleaning up. commit 00106f7e0622f2676f8e5caeb2596a899e35a70f Author: Alan Garny '' Date: Wed Oct 31 10:37:54 2012 +0100 Some refactoring which consisted of removing a .ui file '(#114).' commit 61f175664799eaee63fb39ad871f18dbe538fc3b Author: Alan Garny '' Date: Wed Oct 31 10:11:05 2012 +0100 Some refactoring which consisted of removing a .ui file '(#114).' commit ee007b228175147c50ef5f03604d0bcfc4d577d7 Author: Alan Garny '' Date: Tue Oct 30 18:31:14 2012 +0100 Some refactoring which consisted of removing a .ui file '(#114).' commit 05ae54ec047563f635f110a92c895038264309bb Author: Alan Garny '' Date: Tue Oct 30 17:59:30 2012 +0100 Some work on our Simulation collapsible widget '(#112).' Also some minor cleaning up. commit c9783d3e9ef39cb1dd6f8442ce9028c27175cf10 Author: Alan Garny '' Date: Tue Oct 30 17:42:12 2012 +0100 Some minor cleaning up. commit 2e6fc89fa22cf974cfb5d23535e10bbbc3f81192 Author: Alan Garny '' Date: Tue Oct 30 17:35:10 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 49736b4e3825a5d5223cf0c90313747e7275f6ce Author: Alan Garny '' Date: Tue Oct 30 17:12:02 2012 +0100 Some work on our property editor widget '(#112).' commit d014703bca3fcebbf2c1974f0dce1853c0afc90d Author: Alan Garny '' Date: Tue Oct 30 16:59:35 2012 +0100 Some minor cleaning up. Just renamed ToolBar to ToolBarWidget and TreeView to TreeViewWidget. commit 12b66f5762fe88b0eb0738e994055bcbb66c401c Author: Alan Garny '' Date: Tue Oct 30 16:58:55 2012 +0100 Some minor cleaning up. Just renamed ToolBar to ToolBarWidget and TreeView to TreeViewWidget. commit c5e8ee1113e74ccb0d674a8431096053473c1b10 Author: Alan Garny '' Date: Tue Oct 30 16:27:45 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 592b516ebd767af77b1366713e724db787b05e83 Author: Alan Garny '' Date: Tue Oct 30 16:18:41 2012 +0100 Reverted some recent changes. I got carried away and wanted to use some of Qt 'Designer'\''s' components, but this is not the right approach. At least two reasons: '1)' we need three columns '(parameter,' value and 'units)' and not only 'two;' and '2)' Qt 'Designer'\''s' property editor displays the properties of a QObject instance. So, we would have to dynamically set properties to an ''\''empty'\''' QObject instance, but then there is the issue of the ''\''objectName'\''' property being there by $'default\342\200\246' Also, what about properties having properties of their 'own?' Whatever the case, it seems like Qt 'Designer'\''s' property editor is not the way to go. Instead, we will probably have to use a QTreeView. commit f7e8b9237b53543c11237febc7d1d68d69a1b918 Author: Alan Garny '' Date: Tue Oct 30 15:59:14 2012 +0100 Revert '"Some' work on our Simulation collapsible widget '(#112)."' This reverts commit adc61a5a2af5d19cb465b2f2fe955719e6fb9604. commit 9ba5baf5af184dcc48e015dfff3e724996919fbb Author: Alan Garny '' Date: Tue Oct 30 15:59:14 2012 +0100 Revert '"Some' work on our Simulation collapsible widget '(#112)."' This reverts commit 47c618e8098cb79900bf22f3aba7a99300da54fc. commit 8cb319ca7669d85264eb3805dc137aa3adc695ea Author: Alan Garny '' Date: Tue Oct 30 15:59:14 2012 +0100 Revert '"Some' work on our Simulation collapsible widget '(#112)."' This reverts commit cbf97cce5d62febf67b25fb417c0f0055cb0ea41. commit 8487beab20c13ead47ef99d6ff18dace2813d29c Author: Alan Garny '' Date: Tue Oct 30 15:59:14 2012 +0100 Revert '"Some' work on our Simulation collapsible widget '(#112)."' This reverts commit 6bf20f8c80ecd30e79a4b7a8692cff2fd1e703fc. commit 6aa6c850d283ea0c5ecb705ed259c2186be98005 Author: Alan Garny '' Date: Tue Oct 30 15:21:37 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 07b2ca4daaa21d1b1d37ca6d03ccda0139f6b807 Author: Alan Garny '' Date: Tue Oct 30 14:46:40 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 7ac5234db667b527d08e34c9c188d2c8d8c1180c Author: Alan Garny '' Date: Tue Oct 30 14:12:40 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 40ad2410e444360dfbb3063040621e74ddf78b30 Author: Alan Garny '' Date: Tue Oct 30 13:12:55 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 0f97c00cb8153932a1cf9da81c1a18a18058ca36 Author: Alan Garny '' Date: Mon Oct 29 19:19:41 2012 +0100 Updated 'OpenCOR'\''s' snapshot. commit a787eaf808f9c7c120b262c14c6103300a5329ce Author: Alan Garny '' Date: Mon Oct 29 19:06:16 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 4c2070b7cae586786e71c44f20f25eb6d4b8ebf9 Author: Alan Garny '' Date: Mon Oct 29 18:54:46 2012 +0100 Some minor aesthetic improvements to our collapsible widget. Also some minor cleaning up. commit ef0abf353984ef1ce5b0059efe094f9ba94a2d5b Author: Alan Garny '' Date: Mon Oct 29 18:37:18 2012 +0100 Slightly improved our collapsible widget. commit 7e2a387e9e99628ecfd74313b259162f16f835a6 Author: Alan Garny '' Date: Mon Oct 29 17:05:52 2012 +0100 Some work on our Simulation collapsible widget '(#112).' commit 398fabfa114846ac07a22220bf56ed3a1faa9f16 Author: Alan Garny '' Date: Mon Oct 29 16:28:36 2012 +0100 Minor improvement to our CollapsibleWidget. commit 18a54d1d2e26cc382e3408e03e76796a75796db0 Author: Alan Garny '' Date: Mon Oct 29 16:25:53 2012 +0100 Some work on our General collapsible widget in our SingleCellSimulation plugin '(#112).' commit 71d1657265a9458c8faf6d8197cd802adaa3cad7 Author: Alan Garny '' Date: Mon Oct 29 15:58:55 2012 +0100 Some work on our General collapsible widget in our SingleCellSimulation plugin '(#112).' commit d705402b7c786df88d82638325ab8d33c2db905b Author: Alan Garny '' Date: Fri Oct 26 19:05:58 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 15efa24e24b4729e32a59727ef2c04d176053d27 Author: Alan Garny '' Date: Fri Oct 26 18:29:22 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 0cfd4124ffdf5197f8bee767cd9e8438488be2d3 Author: Alan Garny '' Date: Fri Oct 26 18:20:21 2012 +0200 Some work on a collpsible widget as part of our work on the SingleCellSimulation plugin '(#112).' commit c0733dfa084c614913b843e610d397a1d4b75f0b Author: Alan Garny '' Date: Fri Oct 26 16:42:21 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 0239d2d810a9f4c6a7f9cca10c1c73ccf020c539 Author: Alan Garny '' Date: Fri Oct 26 11:46:16 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit f59b036dceae7aa660432c8d7420054c89a68acd Author: Alan Garny '' Date: Fri Oct 26 11:12:36 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 78e438e886cc7c1907e55af0311f9fe1eeb4b4c1 Author: Alan Garny '' Date: Fri Oct 26 10:31:09 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit a5bd119cc6a998b4535a5dcf0a2cafa0412c12cd Author: Alan Garny '' Date: Fri Oct 26 10:27:26 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 8f1d2252d7e342dfc05cb8ae12445326fc48222a Author: Alan Garny '' Date: Thu Oct 25 18:38:39 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit eeafe594cb31f826d7fe3ebfd5fc88f07b9e52a8 Author: Alan Garny '' Date: Thu Oct 25 17:32:05 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 537fd686183feba94c3c351723f1ba499452dcf5 Author: Alan Garny '' Date: Thu Oct 25 17:16:57 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 20e42a121b9b7482df0c1a977f08587b2e6255f2 Author: Alan Garny '' Date: Thu Oct 25 16:11:27 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 179ed16b9e67f5a14e3c8a71809219630534cdb0 Author: Alan Garny '' Date: Thu Oct 25 14:21:01 2012 +0200 Some minor cleaning up '(follow' 'Qt'\''s' way of passing a parent to a 'widget'\''s' 'contructor).' commit 6c285dd9eae3c681f58736a72c8ba029a99fa740 Author: Alan Garny '' Date: Wed Oct 24 17:29:47 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' Also some minor cleaning up. commit 3466fc5a66ec1a06cca163dea74c752ecbe9afb6 Author: Alan Garny '' Date: Wed Oct 24 15:01:24 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit bd3b2ccc4d53a6b4afb0f2cc037a34c9025298a1 Author: Alan Garny '' Date: Wed Oct 24 14:41:51 2012 +0200 Some work on a collpsable widget as part of our work on the SingleCellSimulation plugin '(#112).' commit 324a88900decbe915e74400f112083be249f5682 Author: Alan Garny '' Date: Wed Oct 24 11:45:12 2012 +0200 Updated our .gitignore file commit f52a822b131d6fdbfbc8ddf6291f3bca90213788 Author: Alan Garny '' Date: Tue Oct 23 10:12:28 2012 +0200 ''\''Upgraded'\''' to version 1.12rc2 of the CellML API. commit a7c10771c92a2f362a89e6f223a30fc8f86b726a Author: Alan Garny '' Date: Mon Oct 22 17:19:48 2012 +0200 Working on our contents widget for the SingleCellSimulation plugin '(#112).' commit 32e85a00b68e505815664836a8f170aec8a7296e Author: Alan Garny '' Date: Mon Oct 22 16:04:11 2012 +0200 Keep track of our 'contents'\''' 'splitter'\''s' sizes '(#112).' commit 629d23fcb040dc5e1e870962501d42b9b34cec56 Author: Alan Garny '' Date: Mon Oct 22 15:11:32 2012 +0200 Improved the rendering of a line widget '(the' wrong colour was used on OS 'X).' commit 5ef3704bc69c71fb82e4b85ab6d803de7468ca19 Author: Alan Garny '' Date: Mon Oct 22 15:02:31 2012 +0200 Improved the rendering of a line widget '(the' wrong colour was used on OS 'X).' commit d3e7e38a26143aef75082beab968fa7a8792b7c4 Author: Alan Garny '' Date: Mon Oct 22 13:08:21 2012 +0200 Some work on our SingleCellSimulation plugin '(#112).' commit e3be1d64ec76aaac800d75f8a3aa66041c53ad43 Author: Alan Garny '' Date: Fri Oct 19 17:36:25 2012 +0200 Created a new snapshot for OpenCOR. commit 6e71ceb4fcb0d80d3814b6559f2f2d8f91a96068 Author: Alan Garny '' Date: Fri Oct 19 17:20:26 2012 +0200 Some work on our SingleCellSimulation plugin '(#112).' commit 757a3371357611601e48dc6aeb0fe20afe7ce990 Author: Alan Garny '' Date: Fri Oct 19 17:15:04 2012 +0200 Some work on our SingleCellSimulation plugin '(#112).' commit 4447b4df699e3610402c255702b20f0b5efcc80f Author: Alan Garny '' Date: Fri Oct 19 17:03:43 2012 +0200 Some work on our SingleCellSimulation plugin '(#112).' commit c96fe0373243acea14a70aa8d67d78b27e81a00c Author: Alan Garny '' Date: Fri Oct 19 16:48:47 2012 +0200 Some minor cleaning up. commit 17800aa71ff871bb0638ab81579475e768b4d699 Author: Alan Garny '' Date: Fri Oct 19 16:34:18 2012 +0200 Some work on our SingleCellSimulation plugin '(#112).' commit 1610e5ed7625eb83e44c01f3211c0bc63941bc4d Author: Alan Garny '' Date: Fri Oct 19 12:52:46 2012 +0200 Upgraded the CellML API to the latest snapshot '(17' 'October).' commit bd49b7b7ee8ad44119d4c8e43b09e8ba80aac312 Author: Alan Garny '' Date: Fri Oct 19 10:17:26 2012 +0200 Fixed the user rights of some Shell scripts which got changed by mistake. commit d809a7478f06f9febff638161a4ab9185dda1fa0 Author: Alan Garny '' Date: Thu Oct 18 17:42:45 2012 +0200 Minor update to the developer documentation. commit 08cf157d88b1866483283be1b0a30a7100fd5759 Author: Alan Garny '' Date: Tue Oct 16 17:58:23 2012 +0200 Minor update to the developer documentation. commit 0d608abaaefbabd9a447c00ea5c7558c889ed3b4 Author: Alan Garny '' Date: Tue Oct 16 17:50:32 2012 +0200 Minor update to the developer documentation. commit 5ab97578b0f835c43f8b9a039c56ea42a61f9b33 Author: Alan Garny '' Date: Tue Oct 16 14:12:51 2012 +0200 Made sure that, on OS X, the CoreSolver plugin gets properly referenced by plugins that need it. commit 6bc57ca20d63dba2fb78ed8b6cfc8673f477950c Author: Alan Garny '' Date: Tue Oct 16 13:53:59 2012 +0200 Slight update to the developer documentation. commit ddce95171e52444c09e82c87a3cf22e17af0616c Author: Alan Garny '' Date: Sun Oct 14 17:45:10 2012 +0200 Minor update to our downloads page. commit a2c7d406931324955709170dc4808f33919d9bc9 Author: Alan Garny '' Date: Sun Oct 14 15:29:31 2012 +0200 Let the user know whether a model contains any non-linear algebraic system. commit 8bc0022295ba67305751934f3529ade1a0a4ea7d Author: Alan Garny '' Date: Sun Oct 14 14:49:00 2012 +0200 Addressed an issue with an external function not being found by LLVM on Linux '(closes' '#111).' commit 77bea63ea3c9fe4a2a2803889c8979427df433f7 Author: Alan Garny '' Date: Sun Oct 14 14:40:05 2012 +0200 Some minor cleaning up. commit f8483bbc0489eb715baecf3d6976430bc3d51fc3 Author: Alan Garny '' Date: Sun Oct 14 14:34:53 2012 +0200 Some minor cleaning up. commit 2055f8cb2c361090cd0725412202b4ad4be1ed85 Author: Alan Garny '' Date: Sun Oct 14 13:08:13 2012 +0200 Some minor cleaning up. commit 9ed678e421aeeee88274e37c9a66e0fd6430deb7 Author: Alan Garny '' Date: Sun Oct 14 02:22:37 2012 +0200 Some minor cleaning up. commit 3ec43cf4b4053b8d08a2a8dd40cfe1e935ac381b Author: Alan Garny '' Date: Sun Oct 14 01:44:55 2012 +0200 Improved our Compiler plugin. commit e680a4d8ea4b8e02618cdac2bfd59d76968d3ebe Author: Alan Garny '' Date: Sun Oct 14 00:48:22 2012 +0200 Some minor cleaning up. commit 21e9df6801375934f5052d47a0a962e57d323f08 Author: Alan Garny '' Date: Sat Oct 13 12:10:51 2012 +0200 Done with supporting the use of non-linear algebraic solvers '(closes' '#111)' and KINSOL in particular '(closes' '#108).' commit 17f6cf7708bff47fdadad57ad25bb6eb2ae5a885 Author: Alan Garny '' Date: Fri Oct 12 14:12:50 2012 +0200 Some work on supporting non-linear algebraic solvers '(#108).' commit e6ec1fa005fa1f5aaa6e3b53a7525d7721226943 Author: Alan Garny '' Date: Fri Oct 12 13:47:49 2012 +0200 Some work on supporting non-linear algebraic solvers '(#108).' commit 87f0a647c5712892c439dceabc6dafd957d58b7b Author: Alan Garny '' Date: Fri Oct 12 10:30:27 2012 +0200 Some work on supporting any non-linear algebraic solver '(#108).' commit d9d13cf1f190ec715be583017a7568c600fc07d6 Author: Alan Garny '' Date: Fri Oct 12 09:34:49 2012 +0200 Added a new CellML file to our list of supported CellML files '(#108).' commit 37f2a5a529a69f8fb9779610e5f7ddd545306149 Author: Alan Garny '' Date: Thu Oct 11 18:38:12 2012 +0200 Some minor cleaning up. commit bbd0f63b9e8eb76ce7997f36070694645a1527e9 Author: Alan Garny '' Date: Thu Oct 11 17:28:17 2012 +0200 Clean up the CellML API generated C code. commit f7bd316b34e33543f44e88f75955d017d565b57a Author: Alan Garny '' Date: Wed Oct 10 18:36:26 2012 +0200 Some work towards supporting KINSOL '(#108).' commit 65b78a4337658db75735574bbe9f95e6a6ce7314 Author: Alan Garny '' Date: Wed Oct 10 18:05:50 2012 +0200 Some work towards supporting KINSOL '(#108).' commit 1dceaec63bcda05574f53cb799c16dd58e78ed7c Author: Alan Garny '' Date: Wed Oct 10 16:20:01 2012 +0200 Some minor cleaning up. commit 341e5930ef47512b45b685dcd4f7bf85d83290cb Author: Alan Garny '' Date: Wed Oct 10 11:48:52 2012 +0200 Minor comment. commit df5908cfc17abe7baf799e863d064b41abd8dd18 Author: Alan Garny '' Date: Wed Oct 10 10:48:16 2012 +0200 Improved the generation of C code for a CellML file '(#108).' commit f97283a18b4062e6deb0ee5da130112d3b3c257c Author: Alan Garny '' Date: Wed Oct 10 10:01:35 2012 +0200 Upgraded the CellML API to version 1.12rc1 '(Windows).' commit 649884dd221a9452f7ecef556a6a8d6c43fc9aad Author: Alan Garny '' Date: Tue Oct 9 15:50:59 2012 +0200 Minor cleaning up for our DAE solver '(#108).' commit 3ca82e694935f4ab8f9c3937b610618ad8e4a1d2 Author: Alan Garny '' Date: Tue Oct 9 15:38:22 2012 +0200 Minor cleaning up for our DAE solver '(#108).' commit 24d4d0035220e59d81d2519bc80142a89d8e025f Author: Alan Garny '' Date: Tue Oct 9 15:35:27 2012 +0200 Minor cleaning up for our DAE solver '(#108).' commit 87cac703c5f6120a967a8586d54f19d8ff4b3dd1 Author: Alan Garny '' Date: Mon Oct 8 18:28:08 2012 +0200 Minor update to our developer documentation. commit d72355b4f0c55219cb1426f833d8c960391db3b9 Author: Alan Garny '' Date: Mon Oct 8 18:21:23 2012 +0200 Allow a couple more CellML files to be run '(#108).' commit 287b07a9c5bfdbf320d1694632041fa1dcd43388 Author: Alan Garny '' Date: Mon Oct 8 16:26:16 2012 +0200 Upgraded the CellML API to the snapshot of 3 October 2012 '(Windows).' commit c23e20ba3f6d443f12430043f547b563b788eb6f Author: Alan Garny '' Date: Mon Oct 8 16:17:06 2012 +0200 Very minor update to the QtSingleApplication tool. commit f133c4d8b75bd5139d44a34bf87adf3bb7ac73fb Author: Alan Garny '' Date: Sat Oct 6 16:44:52 2012 +0200 Reduced the size of a picture used on the website. commit 8de4d90ffc25200d06b21ef64dab5acfa7b2d798 Author: Alan Garny '' Date: Thu Oct 4 16:40:38 2012 +0200 Allow a file which 'doesn'\''t' have a file extension of .cellml to be a CellML file '(closes' '#109).' commit 74545c4a451b5077bf252d5d5b6e4bd379022b15 Author: Alan Garny '' Date: Thu Oct 4 16:34:02 2012 +0200 Some minor cleaning up. commit 4921175b4cefc1f34dcfce88eb433a7d83cf1f37 Author: Alan Garny '' Date: Mon Oct 1 17:13:41 2012 +0200 Improved the updating of a CellML file runtime. commit 60e4a11043d93a0284271d7b2c115a67d3c87037 Author: Alan Garny '' Date: Mon Oct 1 12:39:53 2012 +0200 Minor improvement to our CoreSolver plugin '(and' our DAE solver class in 'particular).' commit 54da6176a3607037a18fc6ea2224a663359681a0 Author: Alan Garny '' Date: Sat Sep 29 15:02:10 2012 +0200 Some work on fully supporting DAE models '(#108).' commit 0c8ab9d45211ac3f59e587ee2b9e3399c0fea564 Author: Alan Garny '' Date: Sat Sep 29 14:03:15 2012 +0200 Some work on fully supporting DAE models '(#108).' commit 1f837215e20bc37a917ae36f604eb3c53061383a Author: Alan Garny '' Date: Fri Sep 28 19:25:05 2012 +0200 Updated the OpenCOR snapshot. commit 0c016d3915308ec1dec71244bf36861eab2aa83b Author: Alan Garny '' Date: Fri Sep 28 17:51:03 2012 +0200 Some work on fully supporting DAE models '(#108).' Also some minor cleaning up. commit 2b71efd3668bad7a784bb802162f27cea4e3c473 Author: Alan Garny '' Date: Fri Sep 28 15:19:58 2012 +0200 Some work on fully supporting DAE models '(#108).' commit 6d4a458b3becfcbb2e695e1891bd34567288871a Author: Alan Garny '' Date: Fri Sep 28 12:36:31 2012 +0200 Some work on fully supporting DAE models '(#108).' commit 3e2eee4d9c6f281aafeecef37b0dbdef167dedc3 Author: Alan Garny '' Date: Thu Sep 27 18:45:36 2012 +0200 Minor fix for our SingleCellSimulation plugin. commit 94a454233abb12f53514ffc45b7390bff9a5f4a2 Author: Alan Garny '' Date: Thu Sep 27 18:20:42 2012 +0200 Some minor debug improvements. commit 70a1165037caa447cb421bac83e5829302179325 Author: Alan Garny '' Date: Thu Sep 27 18:17:10 2012 +0200 Some more work on our ''\''new'\''' Compiler plugin. commit 20e220db7d2951cf5c052901b5fa8406ba4f1da5 Author: Alan Garny '' Date: Thu Sep 27 15:53:01 2012 +0200 Some minor cleaning up of our Compiler plugin. commit 8773da1abf2ee5746cf967bbcf98b209b9a3303b Author: Alan Garny '' Date: Thu Sep 27 15:50:27 2012 +0200 Renamed our Computer plugin to Compiler plugin '(since' this is what that plugin really does rather than be a 'computer!).' commit 0acb69b77c384b06b7f3fcf3b6e23da3d182c214 Author: Alan Garny '' Date: Thu Sep 27 13:42:31 2012 +0200 Some major cleaning up of our Computer plugin. commit c7e7033c931f9b4449a1c042465f91df6e490ec9 Author: Alan Garny '' Date: Thu Sep 27 11:04:57 2012 +0200 Some minor cleaning up of our Computer plugin. commit 09bc8b8dcc6ee1b44c3ca49c3f4c0557eefe55f2 Author: Alan Garny '' Date: Thu Sep 27 10:43:59 2012 +0200 Some minor cleaning up of our Computer plugin. commit 1f6b8dbb3c9112a0f7537134ba2ac6959a68bc1d Merge: ca7c059bc 403b2e359 Author: Alan Garny '' Date: Wed Sep 26 18:04:57 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ca7c059bc9653a0ef84120a0a476c1d55d0bc312 Author: Alan Garny '' Date: Wed Sep 26 17:14:57 2012 +0200 Working on adding support for KINSOL '(#108).' commit 403b2e359d2d964153ef586036c25a06747f4d6e Merge: a7a036fff 860e37d16 Author: Alan Garny '' Date: Wed Sep 26 14:31:51 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 860e37d161be739285b225117d60d8266a49254f Author: Alan Garny '' Date: Wed Sep 26 14:20:29 2012 +0200 Upgraded, on Windows, the CellML API binaries to the snapshot version of 26 September 2012. commit a7a036fffbacb59cc0e0ad999fa812b4c8961916 Author: Alan Garny '' Date: Wed Sep 26 13:32:50 2012 +0200 Working towards our KINSOL plugin '(#108).' commit 93efedfcb65910775b9c5bcaafd228ca36c0f34e Author: Alan Garny '' Date: Wed Sep 26 11:49:14 2012 +0200 Working towards our KINSOL plugin '(#108).' commit 50b84e1df5aee0aeff0b1ff1f50444a2deb8c30a Author: Alan Garny '' Date: Wed Sep 26 10:19:34 2012 +0200 Added KINSOL to our SUNDIALS plugin '(#108).' commit 1c730334d9b98b94babf4e2b1bc9ab56c66b59ca Author: Alan Garny '' Date: Tue Sep 25 19:44:26 2012 +0200 Some work on the documentation. commit a9f734bc5aed0d1bcb37d4ac2f8c53a83c2b32d9 Author: Alan Garny '' Date: Tue Sep 25 19:42:01 2012 +0200 Some work on the documentation. commit 3e84a1a16d88ed168c7fe46a2a67b713661a288e Merge: 3e828b8f8 f957029c5 Author: Alan Garny '' Date: Tue Sep 25 19:34:17 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit f957029c50c746c892d52ff66693588593ec15d3 Author: Alan Garny '' Date: Tue Sep 25 18:52:40 2012 +0200 Some work on the documentation. commit 2b0750cdba656f47f4007f2353bec7f1d1ef6007 Author: Alan Garny '' Date: Tue Sep 25 18:49:38 2012 +0200 Some work on the documentation. commit cef628995ef58e269ede119b5b0a27496b5a8dc7 Author: Alan Garny '' Date: Tue Sep 25 18:17:25 2012 +0200 Some work on the user documentation. commit bc7235dc76deadf80988b2a6d9e61f026990cf97 Author: Alan Garny '' Date: Mon Sep 24 13:44:58 2012 +0200 Update QJson directly from its Git repository. commit 8672c8626376908f4f6295811e30fd3acefb813b Author: Alan Garny '' Date: Mon Sep 24 12:50:10 2012 +0200 Some work on our documentation. commit 6a4d6659f95e47e3f47197daaae90cada8ef632b Author: Alan Garny '' Date: Mon Sep 24 11:04:52 2012 +0200 Some work on our documentation. commit 1b578b9eaa1b5194e29cf973cdbde308c004cbd0 Author: Alan Garny '' Date: Mon Sep 24 10:56:48 2012 +0200 Some work on our documentation. commit 3e828b8f822afda33313eae0862f3d57f725db24 Author: Alan Garny '' Date: Sun Sep 23 01:12:20 2012 +0200 Slight improvement to our documentation. commit 8c4a313ce2c90f81965b8e4e164f82ad1eaf7933 Author: Alan Garny '' Date: Sun Sep 23 01:07:22 2012 +0200 Slight improvement to our documentation. commit 2f0b1543680d468b116c0db385f9d1e1f8f063c6 Author: Alan Garny '' Date: Sun Sep 23 01:05:04 2012 +0200 Slight improvement to our documentation. commit a77b8c10f19afa467e36850148b49dd1dd744454 Author: Alan Garny '' Date: Sun Sep 23 00:35:46 2012 +0200 Slight improvement to our documentation CSS menu. commit adc49c0c49630cfbab7e67cf8232ced0536d4cfb Author: Alan Garny '' Date: Sat Sep 22 02:02:40 2012 +0200 Slight improvement to our website homepage. commit ecd95c90b18373ceb75cc1bf843978e6571734ae Author: Alan Garny '' Date: Fri Sep 21 21:20:15 2012 +0200 Some work on the downloads page for the website. commit 6ccf033c2cd8a09a6a7768ae02c3ff8fae2c3b7d Author: Alan Garny '' Date: Fri Sep 21 18:30:34 2012 +0200 Reworked the documentation quite a bit since gcc required an awful lot of memory to build our Help plugin. This was due to our help containing some dissemination stuff '(PDF+PPTX),' resulting in a C++ file being something like 34MB 'big!' commit a410bad48e264f28317f0f9d5188a2094315ada2 Author: Alan Garny '' Date: Fri Sep 21 18:27:45 2012 +0200 Updated jQuery from version 1.8.1 to version 1.8.2. commit abb0b606d2fab2aa46c28491116163888af1b101 Author: Alan Garny '' Date: Thu Sep 20 19:07:36 2012 +0200 Some work on the user documentation. commit 59619bf6bcdcf89df9cb5085615ef553ca3e81bd Author: Alan Garny '' Date: Thu Sep 20 17:32:13 2012 +0200 Some work on the user documentation. commit 4d6404dba54672c1c8cda0ba3ff4bb410f91bd73 Merge: e41ff0f6b a04f26a16 Author: Alan Garny '' Date: Thu Sep 20 16:20:46 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit e41ff0f6ba092582a4501714bda8252d5a5ee381 Author: Alan Garny '' Date: Thu Sep 20 16:17:53 2012 +0200 Some work on the user documentation. commit fce0c6ff2c04c9b9420c4b29d1d72ef697010923 Author: Alan Garny '' Date: Thu Sep 20 15:16:27 2012 +0200 Some work on the user documentation. commit fab13edcb6cc0326eafab12eb88009cec15f6d88 Author: Alan Garny '' Date: Thu Sep 20 11:42:16 2012 +0200 Some work on the user documentation. commit a04f26a162ccee6acf5af8ad572a676addf8c7cb Author: Alan Garny '' Date: Thu Sep 20 10:44:31 2012 +0200 Minor update to the 'developer'\''s' documentation as a result of upgrading from Xcode 4.4.1 to Xcode 4.5. commit 584a5f7d51e21f9eaf5d09d93758d63f78256356 Author: Alan Garny '' Date: Thu Sep 20 07:49:30 2012 +0200 Minor update to the user documentation. commit ad25375254e93535aad49e7c879450e241996b9a Author: Alan Garny '' Date: Wed Sep 19 17:50:08 2012 +0200 Some work on the user documentation. commit 5202fcb4823d53595d9e910823f5858c94feba1e Author: Alan Garny '' Date: Wed Sep 19 17:44:12 2012 +0200 Some work on the user documentation. Also some minor improvements here and there to OpenCOR itself. commit 2f55e7c5df6d773997aef1c21de1991ec012704e Author: Alan Garny '' Date: Wed Sep 19 15:33:52 2012 +0200 Some minor improvements to the documentation and some GUI messages. commit 5c39f65d87b7ed3751105653725350933c6452bd Author: Alan Garny '' Date: Wed Sep 19 13:51:11 2012 +0200 It 'doesn'\''t' matter, but apparently '"doctype"' should be capitalised, so... commit 9584e67cd85af0e1dcedfd61fb75f8d157499882 Author: Alan Garny '' Date: Wed Sep 19 13:44:45 2012 +0200 In the documentation, to show a full-size screenshot '(from' say the user interfaces 'page)' used to work fine on the website, but not in OpenCOR. When the screenshot was shown, then to go ''\''back'\''' would get us back to the page we had visited prior to visiting the user interfaces page while it should have got us back to the user interfaces page. I guess this is due to the fact that we generated the whole image page and QtWebKit got slightly lost as a result of it. Anyway, now, we have a ''\''proper'\''' image page and it all works fine. commit ce002b671a24c4d1ad3545303b4474ea787d5273 Author: Alan Garny '' Date: Wed Sep 19 11:06:00 2012 +0200 Minor fix to one of our JavaScript functions. commit 4d12f863988879dfeca5bedec57cccc13d013c54 Author: Alan Garny '' Date: Wed Sep 19 10:35:52 2012 +0200 Minor updates to the developer documentation. commit ff75603c56a65800b208546b48abbbc0d3173c1f Author: Alan Garny '' Date: Wed Sep 19 10:22:47 2012 +0200 Minor update to our documentation. Also updated the Qt-related French file. commit 7b68114f0489db6c54edd10d04186f6e68f7d422 Author: Alan Garny '' Date: Tue Sep 18 20:36:32 2012 +0200 Some work on the user documentation. commit e361f5df109219d962cabe89c501cab363df3dd9 Author: Alan Garny '' Date: Mon Sep 17 18:28:20 2012 +0200 Worked some more on our user documentation. Also cleaned the documentation a bit in general. commit 7e384e522a7842b9c55a6c8347df602a9db74ec6 Author: Alan Garny '' Date: Mon Sep 17 15:17:13 2012 +0200 Some work on the user documentation. commit 5413dee77e47b3ffea0e07baa94543b669f870e9 Author: Alan Garny '' Date: Fri Sep 14 17:19:34 2012 +0200 Show a context menu when right clicking the link of a resource or id, and allow its URL to be copied to the clipboard '(closes' '#106).' commit df9f21366215e8674cc9a1cd81f310d67eaa290e Author: Alan Garny '' Date: Fri Sep 14 16:18:21 2012 +0200 Minor refactoring. commit f5f32eb8ebb53278e472c1a0c7f4cb08bdbf2286 Author: Alan Garny '' Date: Fri Sep 14 15:36:57 2012 +0200 Minor refactoring. commit 0023ff3b3179cc2a65bbd42627a6d6ced0b95bd1 Author: Alan Garny '' Date: Fri Sep 14 13:33:52 2012 +0200 Show the URL of a resource or id as a tooltip '(closes' '#106).' commit 7f55d374f4a51ca430912e7c036600e5f011cde8 Author: Alan Garny '' Date: Thu Sep 13 17:45:25 2012 +0200 Some cleaning up of our CMake files. Also worked on getting things to finally work on Linux when it comes to the CellML API. commit ddba69c007d424bea0e5a69df3b592db690b1df1 Author: Alan Garny '' Date: Thu Sep 13 15:41:39 2012 +0200 Some work towards getting the Linux and OS X version of the CellML API binaries to work fine again. commit 51469ca237a1e51fd948a819aeb212600c279d9a Author: Alan Garny '' Date: Thu Sep 13 15:35:11 2012 +0200 Some minor cleaning up of main CMake file. commit d9d460795f70e38503dcddb8b83a2fd08a95e479 Author: Alan Garny '' Date: Thu Sep 13 13:43:24 2012 +0200 Upgraded the CellML API to the 12 September 2012 snapshot '(Windows).' commit f7b9916639e1e3e1b90cc9338e9b88811cc6a8cd Author: Alan Garny '' Date: Mon Sep 10 22:13:22 2012 +0200 Updated some HTML pages. commit 9d63630389fd7efde5a772d88e05ad8581ff6156 Author: Alan Garny '' Date: Mon Sep 10 22:05:38 2012 +0200 Updated the qualifier information page for the CellMLAnnotationView plugin '(I' had completely forgotten about it when updating the 'documentation).' commit 0025a91e49fd33e03857aa88b4d96c344874629d Author: Alan Garny '' Date: Sun Sep 9 19:32:57 2012 +0200 Minor updates to the documentation. commit 7c244998a28fb3331bc559a467f13335ccc8f1d5 Author: Alan Garny '' Date: Sun Sep 9 19:29:52 2012 +0200 Slight update to the documentation. commit 1a4452fe9791e3003eb2fed4b8a27651010ea1cd Author: Alan Garny '' Date: Sun Sep 9 19:25:15 2012 +0200 Added a comment. commit 34ddd9d3a2d9c97a4093b88499bb350e330a86e5 Author: Alan Garny '' Date: Sun Sep 9 19:19:23 2012 +0200 Improved the handling of OpenCOR actions '(using' our own URL 'scheme/protocol)' so that we 'don'\''t' rely on starting a new instance of OpenCOR '(using' 'QProcess)' passing the action to be performed as an argument. Indeed, it worked without noticeable side effect on Windows and Linux '(well,' Ubuntu at 'least),' but on OS X we would have the application icon showing up for a second '(as' a result of starting a new instance of 'OpenCOR)' which is not neat. The good thing about the new handling of OpenCOR actions is that 'it'\''s' immediate '(since' no new instance of OpenCOR needs to be 'launched).' commit 1aed128d179a6c01adc8005dca8ab451bc61cd74 Author: Alan Garny '' Date: Sun Sep 9 18:36:19 2012 +0200 Some minor fixes to get things to compile on OS X. Also minor improvement to the Plugins window. commit 5d1e32961e2da70acc3b60539f69cae5a682c932 Author: Alan Garny '' Date: Sun Sep 9 18:12:41 2012 +0200 Slight update to the user documentation. commit ff45846ee616974a970849e0a6e1f2ca112179ac Author: Alan Garny '' Date: Sun Sep 9 17:45:41 2012 +0200 Slight update to the user documentation. commit 06b39184acf2f3099c1b0dbb7a72278f41c927d8 Author: Alan Garny '' Date: Sat Sep 8 19:25:48 2012 +0200 Minor update to the user documentation. commit 9fa6f463e503f3626d5fadf76946423e955c1126 Author: Alan Garny '' Date: Sat Sep 8 19:23:12 2012 +0200 Can now ask OpenCOR to perform a given action '(closes' '#105).' commit 60b008055cb54492c4bf7c61413fa4fa0d0c8b1f Author: Alan Garny '' Date: Sat Sep 8 17:04:02 2012 +0200 Added a plugins section to the user documentation and made use of our own URL protocol/scheme to show the plugins dialog box '(something' which has to be supported by OpenCOR 'itself).' commit 53bbc2afbea5fa68b2c79f1bc0389a2816837cc1 Author: Alan Garny '' Date: Sat Sep 8 03:36:29 2012 +0200 Minor improvement to the rendering of the menus in the documentation. commit 6a8f02947e0ca0d10aba52288ee2c54f7809801a Author: Alan Garny '' Date: Fri Sep 7 17:50:07 2012 +0200 Slight update to the user documentation. commit a546662b7fdbfefa3b49ef946bd1fff31ef044a7 Author: Alan Garny '' Date: Fri Sep 7 17:26:38 2012 +0200 Minor update to the user documentation. commit 7d93cb08d76ed465fed855e3c53f0684394e0e0c Author: Alan Garny '' Date: Fri Sep 7 17:22:59 2012 +0200 Reworked/updated both the user and developer documentations. Also started work on supporting the help to be dynamic '(#105).' commit 8912c42295a654b0dd669e00b7d4b60c0614764a Author: Alan Garny '' Date: Fri Sep 7 13:05:34 2012 +0200 Minor improvement to our JavaScript code for the documentation. commit d87803d8f483c14283d068c780b66ee2e1b4f0c6 Author: Alan Garny '' Date: Fri Sep 7 10:39:14 2012 +0200 Some more work on our documentation '(we' can now have menu separators and menu items linking to external 'resources).' commit 683d3d599a30a647c38c1774ea34c3964035927a Author: Alan Garny '' Date: Thu Sep 6 19:12:34 2012 +0200 Minor refactoring of our JavaScript code used in the documentation. commit 9948fa23b3b1a9ef4d222f3b04b6773fa9ab058c Author: Alan Garny '' Date: Thu Sep 6 19:04:05 2012 +0200 Minor fix to the menu in the user documentation. commit d432d1d2e7ae04d52a91c9d9ee2853d83633caee Author: Alan Garny '' Date: Thu Sep 6 18:33:50 2012 +0200 Refactored some of our JavaScript code for the documentation. Also some minor improvements to the documentation. commit 6241342e095dd8366598ec01c106cc55c552dfe2 Author: Alan Garny '' Date: Thu Sep 6 16:34:14 2012 +0200 Minor update to the developer documentation. commit a5d5a41477b433ec0bb865dded9a829ba95e2e6c Author: Alan Garny '' Date: Thu Sep 6 16:25:40 2012 +0200 Some refactoring of our documentation. commit 5291af6cf5ba25bf1e67e081b5d9590de1e3c712 Author: Alan Garny '' Date: Thu Sep 6 16:00:24 2012 +0200 Some work on the user documentation: moved the dissemination section to its own page and made sure that the PDF and PPTX files can be opened from 'OpenCOR'\''s' help plugin. Also some minor cleaning up. commit 4c13a57b380056cf8c60e1a46fc3c765b2a25460 Author: Alan Garny '' Date: Wed Sep 5 18:15:21 2012 +0200 Slight update to the developer documentation as a result of upgrading to the latest snapshot of the CellML API binaries. commit 7fe270e1041747ea8628bd3cc48f3494d5c2dee1 Author: Alan Garny '' Date: Wed Sep 5 17:56:37 2012 +0200 Some cleaning up as a result of upgrading to the latest snapshot of the CellML API binaries. Also fixed an issue with the validation of a CellML file '(we' were using a ''\''continue'\''' instead of a ''\''break'\''!).' Also improved the error reporting the CellMLAnnotationView plugin. commit 18b888ef5d93f41823ee1f484497424e7ce1e33a Author: Alan Garny '' Date: Tue Sep 4 15:47:35 2012 +0200 Very minor cleaning up. commit 0449a352aaba794a1de60642932a3a50bae7ca1f Author: Alan Garny '' Date: Tue Sep 4 15:33:29 2012 +0200 Some cleaning up as a result of upgrading to the latest snapshot of the CellML API binaries. commit 0971cdcbfbf4eb56013b1c59b6b1c783a072d6d0 Author: Alan Garny '' Date: Tue Sep 4 14:19:07 2012 +0200 Upgraded to the CellML API binaries to the latest snapshot '(29' August '2012).' commit 2448e32ab1f4de56fa184d7bb4df0a1c8abf95b9 Author: Alan Garny '' Date: Tue Sep 4 11:24:57 2012 +0200 Some minor cleaning up. commit 5ad4fe23682aaff01a2ab6bbfccbeae7f0a4dbaa Author: Alan Garny '' Date: Mon Sep 3 19:16:11 2012 +0200 Upgraded jQuery from version 1.8.0 to version 1.8.1. Also some minor cleaning up. commit b0d214b3124ebccf1147774cb7705aca2ff66cbb Author: Alan Garny '' Date: Thu Aug 16 03:41:39 2012 +0200 Some minor updates to our various CSS files. commit 25a986819bbbffd129183a7d4e831d577072312c Author: Alan Garny '' Date: Thu Aug 16 03:35:45 2012 +0200 Some minor updates to our various CSS files. commit e60ff69ec85992f909335c851083e481a9b669e6 Author: Alan Garny '' Date: Thu Aug 16 03:28:18 2012 +0200 Some minor updates to our various CSS files. commit 5b881d475a804068d58e4fe2cadf2494d13b30eb Author: Alan Garny '' Date: Thu Aug 16 03:25:05 2012 +0200 Some minor updates to our various CSS files. commit 6a367b5ffda4f1ddf940bc9b285a0b281bf35c69 Author: Alan Garny '' Date: Thu Aug 16 03:21:41 2012 +0200 Oops, forgot to update the file structure in the developer documentation. commit 6a007043afe869e5a7823bf0748d8d8960b84f60 Author: Alan Garny '' Date: Thu Aug 16 03:15:59 2012 +0200 Some minor changes and cleaning up to our various CSS files. commit 860aa8974f2b2894504791de72651b9015a6069e Author: Alan Garny '' Date: Thu Aug 16 02:50:03 2012 +0200 Done with adding a jQuery/CSS based menu to both our user and developer documentation. commit 10b8756bca951560bced6c0aef7a9824ba7491ee Author: Alan Garny '' Date: Wed Aug 15 19:54:36 2012 +0200 Some more work on improving the documentation. commit f92da2a297fcf382562dbd981d118b03746b638e Author: Alan Garny '' Date: Wed Aug 15 19:50:38 2012 +0200 Some more work on improving the documentation. commit fff33f8e89883e21e17a8761e5547083cb222f79 Author: Alan Garny '' Date: Wed Aug 15 19:47:12 2012 +0200 Some more work on improving the documentation. commit bdb6d3c45277eebbd71da12e56a5fadffd927657 Author: Alan Garny '' Date: Wed Aug 15 19:21:04 2012 +0200 Some general improvements to the documentation. commit 6979c1b4385282b75f9d6bf41841941c11b37f44 Author: Alan Garny '' Date: Wed Aug 15 15:29:10 2012 +0200 Some work on the documentation. Started using some JavaScript. Also made sure everything is HTML5 compliant. commit b96fce0c3d89f9d251430ffaef94677121f743b5 Author: Alan Garny '' Date: Tue Aug 14 19:33:07 2012 +0200 Some minor improvements to the developer documentation. commit fd2863c1eb5ca99383b9f03b2e5e9faf8dde5cc0 Author: Alan Garny '' Date: Tue Aug 14 19:09:12 2012 +0200 Minor cleaning up to the user documentation. commit b5ba1a038094a17e246d56b13852b40172cd9a6c Author: Alan Garny '' Date: Tue Aug 14 19:07:45 2012 +0200 Went for the minimised version of Google Code Prettify. commit ce4f7791dcba1174fb53cbb1188e256f2ab33fde Author: Alan Garny '' Date: Tue Aug 14 15:22:15 2012 +0200 Some work on the user documentation. commit c4bdd7c8184366b3802739ec258ac4d4b35e8714 Author: Alan Garny '' Date: Tue Aug 14 14:51:34 2012 +0200 Was doing something important in a Q_ASSERT which obviously 'doesn'\''t' get executed when in release mode... 'doh!!' commit 7a207e1f4e29bb5d4b611483ed28ef9d7b690f4c Author: Alan Garny '' Date: Tue Aug 14 14:12:58 2012 +0200 Some minor cleaning up. commit dbe6a7871f3be6bbceceffabcaecdf111daaa011 Author: Alan Garny '' Date: Tue Aug 14 00:02:05 2012 +0200 Slight improvement to the saving of a file. commit c44498934bfc7d8144ab13810279f5dcf311469e Author: Alan Garny '' Date: Mon Aug 13 20:51:39 2012 +0200 Amended a comment. commit cb6082044b106c78f5cd2a3f6c77d7db83828450 Author: Alan Garny '' Date: Mon Aug 13 20:01:33 2012 +0200 Improved 'CellmlFileRdfTriples::add().' commit 54fbf1c2eb45ded52a98b17a7762f471915c9476 Author: Alan Garny '' Date: Mon Aug 13 19:36:52 2012 +0200 Some minor cleaning up '(#57).' commit 5473f1211e62c5c6a7d36b05a7c1de2b923c61c1 Author: Alan Garny '' Date: Mon Aug 13 18:45:23 2012 +0200 I believe we are now done with supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(closes' '#102).' Also closes '#90' '(create' a BioModels.Net annotation editing 'tool).' commit 34177c7ea060ddfa2cceb2c84cda8be2919722a9 Author: Alan Garny '' Date: Mon Aug 13 16:59:11 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit f31dc8c22c062655d65c8534f85aed8208da327a Author: Alan Garny '' Date: Mon Aug 13 16:22:13 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit d265426634f0cb5feb9259ec33fbe2d5c9d76b03 Author: Alan Garny '' Date: Mon Aug 13 14:27:30 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 35eb4dd544ca3bdd999916a61ce51839e272137e Author: Alan Garny '' Date: Mon Aug 13 14:13:49 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' Now, RDF triples get removed from a CellML file upon saving it. commit af3a6bd2cded8c6686436e36576e0c4b99cba75f Author: Alan Garny '' Date: Mon Aug 13 11:57:46 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit bb90103780b71e2eb1ad94e342d5ebc2421d71e3 Author: Alan Garny '' Date: Mon Aug 13 11:47:57 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' Also some minor cleaning up '(#57).' commit ba862157a2bf868577f95c88cf0c1b6db5bc9369 Author: Alan Garny '' Date: Mon Aug 13 11:04:31 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' Also some minor cleaning up '(#57).' commit b35e38beb97f8f870ee63a67257db9d0bf40c3ce Author: Alan Garny '' Date: Mon Aug 13 09:54:38 2012 +0200 Some minor cleaning up '(#57).' commit 53e887b1597e78b9fb6f8c55ef5c831793297ac2 Author: Alan Garny '' Date: Mon Aug 13 09:53:17 2012 +0200 Some minor cleaning up '(#57).' commit 35bcab853e49e5ac4ebd3e61a0bd7f890532e0ca Author: Alan Garny '' Date: Sun Aug 12 14:29:02 2012 +0200 Some minor refactoring and cleaning up '(#57).' commit 538ecb68623d1fcd03cbfd41d833f260871845c3 Author: Alan Garny '' Date: Sun Aug 12 11:27:08 2012 +0200 Minor cleaning up '(#57).' commit fc3fa565314f11eed75eaa291dc904d5a41b30db Author: Alan Garny '' Date: Sat Aug 11 23:06:46 2012 +0200 Minor cleaning up '(#57).' commit 8aefda8a95b7dccda5f18505840ec0bce76889d0 Author: Alan Garny '' Date: Sat Aug 11 16:52:24 2012 +0200 Addressed a potential memory access issue with 'OpenCOR'\''s' CellML-based classes, even though we have never experienced any problem so far. commit 0917b184eddb79712da32d39dbb8cfb951aea4dc Author: Alan Garny '' Date: Fri Aug 10 19:20:56 2012 +0200 Some minor cleaning up '(#57).' commit 484f35393e1198e1c91d2211bc7a92aefbdf9a25 Author: Alan Garny '' Date: Fri Aug 10 17:00:33 2012 +0200 Minor cleaning up '(#57).' commit edb11248c091be51314c4dbfce231171054db8b5 Author: Alan Garny '' Date: Fri Aug 10 16:47:25 2012 +0200 Some minor refactoring '(#57).' Also fixed something in the CellMLSupport plugin '(there' was something wrong with the generation of a unique 'cmeta:id;' see 'CellmlFileElement::rdfTripleSubject()).' commit 693ebe20086794475646545be5c103c2ab5c3e53 Author: Alan Garny '' Date: Fri Aug 10 10:44:21 2012 +0200 Some minor cleaning up '(#57).' commit 8a3a12e949acde396478e14ca0866f1568c820b6 Author: Alan Garny '' Date: Thu Aug 9 16:48:30 2012 +0200 Some minor cleaning up '(#57).' commit 05ab449946a22a3c0507c4c0f87b5912f2ce486c Author: Alan Garny '' Date: Thu Aug 9 16:43:08 2012 +0200 Some minor cleaning up '(#57).' commit 3becf39630d149eaa1d4bc811ea595c9d956b4f1 Author: Alan Garny '' Date: Thu Aug 9 15:26:10 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 9d50176e509c5d1ffc94c50f540f5944ecf40839 Author: Alan Garny '' Date: Thu Aug 9 12:54:19 2012 +0200 Some minor cleaning up '(#57).' commit c184b014362dd4db407982d4e00f4a3414162109 Author: Alan Garny '' Date: Thu Aug 9 11:21:24 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 202463312fdba8dce8fffdb81fd3d3dba6820d2d Author: Alan Garny '' Date: Thu Aug 9 10:24:48 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 7800c0a5468b866e45dbf64b8c64d28459841f08 Author: Alan Garny '' Date: Wed Aug 8 19:27:57 2012 +0200 Some minor refactoring '(#57).' commit 9af4c145fc3d83f4ac7a5f86875ac7ddb1823f81 Author: Alan Garny '' Date: Wed Aug 8 18:40:33 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 66128d72d7ae16d4330034ff3439548d5d26dc44 Author: Alan Garny '' Date: Wed Aug 8 18:19:03 2012 +0200 Handle the case where we try to open a recent file which 'doesn'\''t' exist anymore. commit beb96a36e62bbc52b2a9a22d30dc52f1b314562f Author: Alan Garny '' Date: Wed Aug 8 18:03:15 2012 +0200 Some minor cleaning up '(#57).' commit 962025a6e5ec6db9b03957637f8c3ad642f0b616 Author: Alan Garny '' Date: Wed Aug 8 17:42:20 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 0f5c14f9c4dd98a3533f757b52af815eb3bd5a1a Author: Alan Garny '' Date: Wed Aug 8 17:34:48 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit d3057c06d27ca25a132f0f6eece8b48036853ae7 Author: Alan Garny '' Date: Wed Aug 8 16:16:26 2012 +0200 Minor update to the 'developer'\''s' documentation. commit 51c92a400969f447fd829c08cd8b01d40b92b7f0 Author: Alan Garny '' Date: Wed Aug 8 14:22:31 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 26b7fc9f852baad8edff843778d169a9f0221972 Author: Alan Garny '' Date: Wed Aug 8 11:21:33 2012 +0200 Some minor cleaning up '(#57).' commit 856bc8b59ade0a822d6073c95695fc05be0f254e Author: Alan Garny '' Date: Wed Aug 8 11:05:32 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit eb434720f4e43b849a1669244bb26400c7276ba1 Author: Alan Garny '' Date: Tue Aug 7 18:05:05 2012 +0200 Some minor cleaning up '(#57).' commit ee3a3e7a3161403948e8104810d46b7bd45dbc4c Author: Alan Garny '' Date: Tue Aug 7 16:59:59 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 083201532722b2ce806bc2077049ffd49597a00e Author: Alan Garny '' Date: Tue Aug 7 13:39:14 2012 +0200 Minor updates to our developer documentation. commit d4c043af81fef86b8196f373388bf85cf3896960 Author: Alan Garny '' Date: Tue Aug 7 11:56:25 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit e96b52ea350c6f0a10b765a8f3ca29c99e9545e5 Author: Alan Garny '' Date: Mon Aug 6 20:35:37 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit e9aa50fdca9f2f9ce8f291d0bb63e0d649e9805e Author: Alan Garny '' Date: Mon Aug 6 20:20:11 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 7fad538b834ff32b8752cacdbff5d99761ff2ee2 Author: Alan Garny '' Date: Mon Aug 6 18:37:27 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 1e5af7f08b1b9c6c8e4caeb3b18ea3d0602de54c Author: Alan Garny '' Date: Mon Aug 6 18:26:38 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit 6102d70e3272903cdd8d2504e0e749ed722a7073 Author: Alan Garny '' Date: Mon Aug 6 17:34:14 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit fbf5219099672e513024043a7a726c9b7090e5fe Author: Alan Garny '' Date: Mon Aug 6 17:14:11 2012 +0200 Minor cleaning up '(#57).' commit c1a671db8f637c1dee8b23128f1313306d84b1ad Author: Alan Garny '' Date: Mon Aug 6 17:13:36 2012 +0200 Minor cleaning up '(#57).' commit ac3209349d6e3533559640492deaf7ede13c8872 Author: Alan Garny '' Date: Mon Aug 6 15:27:44 2012 +0200 Minor cleaning up '(#57).' commit 9054b59e5c5e51357aecad9e422ec05f3b6ec3a0 Author: Alan Garny '' Date: Mon Aug 6 14:20:09 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit acf0311f5d8275563fe62bd2a8315fddbafa181d Author: Alan Garny '' Date: Mon Aug 6 13:28:00 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit a2276a48c37e3223203e1ea260898f854403dcfd Author: Alan Garny '' Date: Mon Aug 6 13:05:23 2012 +0200 Ask views to specify which MIME 'type(s)' they support. commit 29084b0c29820d90be26067bcab203f81042ecf6 Author: Alan Garny '' Date: Mon Aug 6 11:50:32 2012 +0200 Some minor improvement to our File interface. commit 18eece83d951ead732f68c4ef08b5f413371e83c Author: Alan Garny '' Date: Mon Aug 6 11:34:18 2012 +0200 Some minor cleaning up '(#57).' commit 1a1665e03c988473d683f594e3d9f66512508f70 Author: Alan Garny '' Date: Sun Aug 5 21:35:29 2012 +0200 Keep track of recently opened files '(closes' '#104).' commit 53ab41c3d71b353b7bc0523fc53810ce338a7d47 Author: Alan Garny '' Date: Fri Aug 3 19:05:40 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit f39e592bc036208fe59f80fbf5d9411507aae058 Author: Alan Garny '' Date: Fri Aug 3 18:57:19 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' Also some cleaning up and refactoring '(#57).' commit 29f002801fbcc4f71aa7078e7f9cb30ca0de2011 Author: Alan Garny '' Date: Fri Aug 3 13:57:29 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' Also some minor cleaning up and refactoring '(#57).' commit df8c50f29373abc8d21c08750a36f9460e68699e Author: Alan Garny '' Date: Fri Aug 3 09:46:29 2012 +0200 Finally came up with a ''\''nice'\''' solution to our Qt Creator + CMake on OS X. commit a45eddbe56a47b677b6e6737b6ae9d09db15c881 Author: Alan Garny '' Date: Thu Aug 2 19:17:00 2012 +0200 Reverted something which is specific to running CMake from Qt Creator on OS X. Also made, once again, the MainWindow class a friend class of Interface and GuiInterface classes. It 'wasn'\''t' necessary on Windows '(and' therefore using 'MSVC),' but it is necessary on Linux and OS X. Also some minor cleaning up '(#57).' commit 5c0c34c62b3f8843f124493677e195598ee6a6d2 Author: Alan Garny '' Date: Thu Aug 2 16:43:01 2012 +0200 Some work on supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit b12a68dce69050799d2113c2c004bf9b13dc402b Author: Alan Garny '' Date: Thu Aug 2 16:14:36 2012 +0200 Working towards supporting the ''\''saving'\'',' ''\''saving' 'as'\''' and ''\''saving' 'all'\''' of files '(#102).' commit b65527eb932cea123d5e6020db43d55a80698bb0 Author: Alan Garny '' Date: Thu Aug 2 13:57:12 2012 +0200 Some cleaning up '(#57).' commit 7861aad3d5b811e1a2f86b1f5841f779df8f5736 Author: Alan Garny '' Date: Wed Aug 1 13:46:59 2012 +0200 Fixed a couple of issues with the viewing of metadata '(#90).' commit 06cead4ad3fb6eda8b24d005785d001581ce8c26 Author: Alan Garny '' Date: Tue Jul 31 18:17:05 2012 +0200 Minor refactoring '(#57).' commit 060ce38b063930100de9086df67675286335e2ef Author: Alan Garny '' Date: Tue Jul 31 17:20:27 2012 +0200 Various minor cleaning ups '(e.g.' removed unused 'windows)' '(#57).' commit d7cfb6e1b2195e0b547ed97fd37347beb20d272d Author: Alan Garny '' Date: Tue Jul 31 16:50:26 2012 +0200 Removed our 'File|Print' action which we 'don'\''t' need for now. commit fbbb9fb17b720cc32b25bc90b7e450f8e6c9278f Author: Alan Garny '' Date: Tue Jul 31 15:52:29 2012 +0200 Working on the GUI side of things for saving a file. commit c2151ff1fc795c686ed4d61ac61ba97ab927679f Author: Alan Garny '' Date: Tue Jul 31 15:35:08 2012 +0200 Minor work on our central widget to change the tab text for a file whenever its modified status changes. commit bad3cd78228f6b74a53dc342311e4ace9ecc822c Author: Alan Garny '' Date: Tue Jul 31 14:11:05 2012 +0200 Working on allowing the direct addition of a metadata term '(#90).' commit ea45f5e62bd96391c74cdea0d45e2fa789e51d46 Author: Alan Garny '' Date: Mon Jul 30 16:20:29 2012 +0200 Minor update to our 'developer'\''s' documentation. commit e3d60a269a4592a85b7ee4bebe07b0349149cb22 Author: Alan Garny '' Date: Mon Jul 30 11:53:14 2012 +0200 Minor update to our README.txt file. commit 08aadd839ea201e0c714a67ec25533b5940611c2 Author: Alan Garny '' Date: Mon Jul 30 11:51:57 2012 +0200 Minor update to our README.txt file. commit 3f27704f46edd01df5d8f998f54f20a893217cc5 Author: Alan Garny '' Date: Sun Jul 29 21:44:50 2012 +0200 Working on allowing the direct addition of a metadata term '(#90).' commit 21938b78b4c44cc2ffe4d033d2ddf34aa322ffd5 Author: Alan Garny '' Date: Sun Jul 29 19:09:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 97c96d4dc0bfae8f9a710efac6b7c39b06034743 Author: Alan Garny '' Date: Sat Jul 28 23:09:41 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit e43cf07e47d41778daa127b51b469151ceff84cc Author: Alan Garny '' Date: Sat Jul 28 22:28:29 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit f070aac519aec081276e2bda2fdd0d16b2fe5f9c Author: Alan Garny '' Date: Sat Jul 28 20:32:37 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit a5323adedd9fa386f44a7a6d26201cc9fa77a25d Author: Alan Garny '' Date: Sat Jul 28 20:22:01 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit ed9e1d382bcf4b006a9c552d7bde9e749d94d640 Author: Alan Garny '' Date: Sat Jul 28 19:12:31 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 340c409aaef70db2566277b0b64a55abc464241f Author: Alan Garny '' Date: Sat Jul 28 18:03:49 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 9b1cfcc5d5669e070a564cd96e0dd70318889074 Author: Alan Garny '' Date: Sat Jul 28 17:42:41 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 18ca012f5d04783809806856e526bc92ae024f43 Author: Alan Garny '' Date: Sat Jul 28 17:21:45 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 6f73b635797ff4455bf260f6d8be66cc53a691b8 Author: Alan Garny '' Date: Sat Jul 28 12:45:03 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 3f198083fa4426c4cc524da434fc7f20c1cd167b Author: Alan Garny '' Date: Fri Jul 27 19:00:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 9dd02f681c35de097726a115e521869879b10410 Author: Alan Garny '' Date: Fri Jul 27 18:39:50 2012 +0200 Reverted something in our main CMake file '(which' we thought would help with the upgrade to OS X 10.8 and Xcode '4.4),' but this was causing other problems while not solving any, so... commit 8fff64f5fd3994dc788bf749ce4e43a697f2ca54 Author: Alan Garny '' Date: Fri Jul 27 17:18:07 2012 +0200 Minor update to the developer documentation as a result of upgrading to Xcode 4.4. commit 9bbd6e0313c89faf63d3032a1c2dd7652ee26d56 Author: Alan Garny '' Date: Fri Jul 27 16:41:13 2012 +0200 Minor update to the developer documentation as a result of upgrading to Xcode 4.4. commit d0885254072d7b548e4c03196ac23cad34c56d1b Author: Alan Garny '' Date: Fri Jul 27 16:16:15 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit fc819faeb470874b1b2ea0198b2dff747b13337a Author: Alan Garny '' Date: Fri Jul 27 16:05:09 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 0134c7b8a9e4eb30ae996570ed1a88e796cedb7f Author: Alan Garny '' Date: Fri Jul 27 11:51:22 2012 +0200 Some minor cleaning up '(#57).' commit 28ddb7a14ac2fa7442dcd79e9eb4c7e0d24f7cfe Author: Alan Garny '' Date: Thu Jul 26 17:04:12 2012 +0200 Some minor cleaning up '(#57).' Also update our LLVM plugin binary on Mac OS X '(using' 'install_name_tool),' but OpenCOR still 'doesn'\''t' work, so I am wondering whether LLVM 'doesn'\''t' have to be rebuilt following our upgrade to Xcode 4.4. commit fa9142d8c008a22a3da769499193f79e12d5bd63 Author: Alan Garny '' Date: Thu Jul 26 16:31:17 2012 +0200 Some minor comments. commit 3085b9929ba6701dc0d69c121f94790e5c974c18 Author: Alan Garny '' Date: Thu Jul 26 15:58:34 2012 +0200 Xcode now uses LLVM instead of gcc, and well LLVM is more rigorous '(and' nicer, faster, etc. too to be 'honest!),' so... commit dccc811ca44e6342f1ad274a6c648bbfb79c0c23 Author: Alan Garny '' Date: Thu Jul 26 14:47:43 2012 +0200 Minor fix in the current year for our copyright information. commit 24a048656ec674cbcf533afdf8ec220a74203ff8 Author: Alan Garny '' Date: Thu Jul 26 14:41:25 2012 +0200 Some OS X 10.8 '(Mountain' 'Lion)' specific stuff. commit 4bd3b7b1bf111b993eaeb15ed88cfb4c53062f17 Author: Alan Garny '' Date: Thu Jul 26 13:48:39 2012 +0200 Slight improvement to our common.cmake file. commit 460e58f92f502914020935fae4bc75555826a149 Author: Alan Garny '' Date: Thu Jul 26 13:11:46 2012 +0200 Some refactoring/renaming/etc. to account for the fact that Mac OS X is now known as OS X, and that OS X 10.8 '(Mountain' 'Lion)' 'doesn'\''t' use /Developer anymore. commit fb6c30bee396e251fb91ea68ff6a55abbcb1c35b Author: Alan Garny '' Date: Wed Jul 25 20:42:02 2012 +0200 Upgraded to XCode 4.4, so updated the 'developer'\''s' documentation. commit a96ebaff3de7e2bfc6ecc2f5cd7f105f57523ba5 Author: Alan Garny '' Date: Wed Jul 25 20:08:22 2012 +0200 Some minor cleaning up '(#57).' commit 3624dbc0a0633ca90f8c3d1d7e83dc4ba4e6bbbd Author: Alan Garny '' Date: Wed Jul 25 17:51:40 2012 +0200 Some cleaning up in our various CMake files '(#57).' commit 2d5d71c4e049b223e3a4412aa3490f4801c98cd7 Author: Alan Garny '' Date: Wed Jul 25 17:27:59 2012 +0200 Some cleaning up in our various CMake files '(#57).' commit b36a2cd52e1fcbd5bd4ec52fd9899a329231da61 Author: Alan Garny '' Date: Wed Jul 25 13:32:53 2012 +0200 Added ''\''support'\''' for OS X 10.8 '(Mountain' 'Lion)' and cleaned a few things up in the process '(#57).' commit e2fb060e8fcceef6383c865e81ea7df284c6b486 Author: Alan Garny '' Date: Tue Jul 24 19:08:51 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit bae67c96a87c36855bd3ccf5456fae22e55eaa46 Author: Alan Garny '' Date: Tue Jul 24 17:32:55 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 89dae434615d0fdffec4ffbfe4b28e92fb1cc5b5 Author: Alan Garny '' Date: Tue Jul 24 16:18:26 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 5de993ca9e064b64761c06ff4675497c45d28725 Author: Alan Garny '' Date: Tue Jul 24 15:50:14 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit a491079a7fab80ec0fb206244b949036190f7a81 Author: Alan Garny '' Date: Tue Jul 24 15:32:27 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit bd30ed86dfb2ab7c02b5d1fb3b7dff1ad5e96c80 Author: Alan Garny '' Date: Tue Jul 24 15:14:19 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit 2504f12b6bd4e23586353589f4c8c795066d6ef4 Author: Alan Garny '' Date: Tue Jul 24 11:07:20 2012 +0200 Some minor refactoring '(#57).' commit c2b6d6ed8a3c3d7788ebd0bb15bc34a3f380a682 Author: Alan Garny '' Date: Mon Jul 23 18:40:40 2012 +0200 Minor improvement to our computer engine class. commit 846aebe11e4615fa1c7480a77352307f2bf10d9d Author: Alan Garny '' Date: Mon Jul 23 17:42:31 2012 +0200 Should now be able to build OpenCOR with the binary version of LLVM+Clang '(at' least, it works on 'Windows).' Also some minor cleaning up '(#57).' commit 2100dc3d6078ae50f6e1c3bd9cb83156b52d33f7 Author: Alan Garny '' Date: Mon Jul 23 16:18:10 2012 +0200 Minor fix as part of our LLVM+Clang work. commit f9d9efb99ed1ae513e6d9b3fbe3196b0e7827d7e Author: Alan Garny '' Date: Mon Jul 23 14:39:25 2012 +0200 Some minor updates for LLVM+Clang. commit 41d169c55aa065fb18d61555115a0fcae4847430 Author: Alan Garny '' Date: Mon Jul 23 14:08:32 2012 +0200 Minor update for LLVM+Clang. commit 7fea1c1c3bdf67c8b3426482d3973169e6a18bc5 Author: Alan Garny '' Date: Mon Jul 23 13:56:18 2012 +0200 Minor update for LLVM+Clang. commit 3ad89a396a224f43f51c2f05df3dc3d3f2662d5a Author: Alan Garny '' Date: Sun Jul 22 20:27:15 2012 +0200 Minor editing of a comment. commit 6b391fd946d6baf075929513c217bfa04e982d2e Merge: 8f1a720d1 270782ece Author: Alan Garny '' Date: Sun Jul 22 18:50:53 2012 +0200 Merge branch ''\''Clang'\''.' commit 270782ece6ee910f91a0ec8060a5c907c46bed64 Author: Alan Garny '' Date: Sun Jul 22 18:12:31 2012 +0200 Some minor cleaning up. commit bfba8a1caedba367a01b4072d994c995c08e165c Author: Alan Garny '' Date: Sun Jul 22 16:50:14 2012 +0200 Some minor cleaning up. commit cbc03e607759447a9cf35868351c61e84081efcf Author: Alan Garny '' Date: Sun Jul 22 16:41:36 2012 +0200 Some minor cleaning up. commit 8c945130707ba0f7571797c4a2739f1a9a531b4d Author: Alan Garny '' Date: Sun Jul 22 15:41:59 2012 +0200 Some minor cleaning up. commit c7279f1ed02f08e0ec89f421ebcde4f73e529253 Author: Alan Garny '' Date: Sun Jul 22 15:26:54 2012 +0200 Done with getting LLVM+Clang to generate binary code from some C code. Just need to do a lot of cleaning up now and then get the binaries for all three platforms. commit 936ed6ee59730616cebd6cf36f523f10dbf7e5d3 Author: Alan Garny '' Date: Fri Jul 20 19:48:58 2012 +0200 Some merging from our master branch. commit 8f1a720d15c85515b24201ad0710a271adfc1a07 Author: Alan Garny '' Date: Fri Jul 20 18:47:19 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit e6255f3c3d1e509c846b12bb0e3e6a9d5db065cb Author: Alan Garny '' Date: Fri Jul 20 17:55:49 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit ce2275632c6d53c47259a7198346925e6ebdcfe2 Author: Alan Garny '' Date: Fri Jul 20 16:33:16 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit c7d298a11316a52301a1e3d366215b54b9a4123e Author: Alan Garny '' Date: Fri Jul 20 16:18:26 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit beba9ccbb3620ebfc3cdcd21c41b0861617f3ffc Author: Alan Garny '' Date: Fri Jul 20 15:44:08 2012 +0200 Minor GUI improvement to allow a file to be dropped on our web view '(#101).' commit de0faaea020d31c6f376b0b1aad8a4513269ed8d Author: Alan Garny '' Date: Fri Jul 20 15:37:31 2012 +0200 Fixed a small GUI issue related to tab order '(#78).' Some minor cleaning up '(#57).' commit 2861660a8a11f97f68b683dbff44113bd05d1187 Author: Alan Garny '' Date: Thu Jul 19 20:02:38 2012 +0200 Fixed a small GUI issue related to switching from one file to another. commit 2022a5e72c185aaedffa4b3e380d9ff35f637a8e Author: Alan Garny '' Date: Thu Jul 19 19:03:59 2012 +0200 Some work on fixing my wrong assumption on cmeta:id values '(#101).' commit d4d7a164f502562c128ea9bf2b25a13f0aa437d7 Author: Alan Garny '' Date: Thu Jul 19 18:46:44 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit 14c01d71f75ffdcaa3907692f8470a184d7bf254 Author: Alan Garny '' Date: Thu Jul 19 18:38:45 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit 847ff639de6bd7d990d4061ebe316369d502ddc4 Author: Alan Garny '' Date: Thu Jul 19 18:24:55 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit ca5b54be3ab4a3a8d7f30bb6bc48704752e45d35 Author: Alan Garny '' Date: Thu Jul 19 17:59:12 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit 680690a997997884222441077a5f4b6621a41472 Author: Alan Garny '' Date: Thu Jul 19 17:48:23 2012 +0200 Minor general GUI update. commit dfb5e394e09e2981461aceadca29c88d570e3529 Author: Alan Garny '' Date: Thu Jul 19 17:39:01 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit 234f7950e0c28823ca96aaf4a20a476620b53b7c Author: Alan Garny '' Date: Thu Jul 19 17:29:33 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit 676828274236e91b82b463ef0fdeca89672a62aa Author: Alan Garny '' Date: Thu Jul 19 17:03:26 2012 +0200 Started work on fixing my wrong assumption on cmeta:id values '(#101).' commit e3d3bf4c669abd8c0c38b725fc9b7b6f7ac4b31d Author: Alan Garny '' Date: Thu Jul 19 15:05:48 2012 +0200 Minor issue related to '#100.' commit 9988e9fa366a4e930e6934e47d441e0d76435e7b Author: Alan Garny '' Date: Thu Jul 19 14:46:06 2012 +0200 Minor issue related to '#100.' commit 55c6e6ee5b8df763af4e02b555e4ff9ae9f66a43 Author: Alan Garny '' Date: Thu Jul 19 10:33:08 2012 +0200 We used to show all the variables while we should have only shown the variables that are defined in the current component '(#78' and '#90).' commit f006e131bc46f4d98b58640a0012a36cfa368238 Author: Alan Garny '' Date: Thu Jul 19 08:10:45 2012 +0200 Some merging from our master branch. commit 3a4462a5d6ccf3e1859f2231eb67b8d627d9814c Author: Alan Garny '' Date: Wed Jul 18 18:11:45 2012 +0200 Some minor cleaning up '(#57).' commit f8e9e6efa5a5544884727fb570bf353ffee5144b Author: Alan Garny '' Date: Wed Jul 18 18:07:22 2012 +0200 Some minor cleaning up '(#57).' commit be4bf5d654470415ed9485d8a53e501f4367341e Author: Alan Garny '' Date: Wed Jul 18 15:17:12 2012 +0200 Some minor cleaning up '(#57).' commit bf4f481625dbe4bb757cf7aa3562ab5d45780c77 Author: Alan Garny '' Date: Wed Jul 18 14:19:13 2012 +0200 Some minor cleaning up '(#57).' commit a5b46a52c7fe091e3048a67843a70e6b873ed195 Author: Alan Garny '' Date: Wed Jul 18 14:17:24 2012 +0200 Some work on our CellML Annotation view plugin '(#78).' Also some minor cleaning up '(#57).' commit a0d7a20e90839a65398e4461f0dcac8d74e1eb05 Author: Alan Garny '' Date: Wed Jul 18 12:42:40 2012 +0200 Closes issue '#100' regarding some missing files in the Windows package. I am not sure whether this was due to our switch to MSVC or not, but at least now it works fine... commit 1521782a43571de7cc03516920a0edd65f7095f2 Author: Alan Garny '' Date: Wed Jul 18 11:15:15 2012 +0200 Closes issue '#99' '(about' distinguishing package names on 'Linux).' commit f1018a4fa130d57ee0eab470f73fdadd03cc4b2c Author: Alan Garny '' Date: Tue Jul 17 20:17:00 2012 +0200 Addressed a small regression issue with CMake 2.8.8 '(see' 'http://cmake.3232098.n2.nabble.com/Problems-with-CPack-2-8-8-td7580729.html).' commit 64030fee325cf8b1f838f62713aa1bebe5a17743 Author: Alan Garny '' Date: Tue Jul 17 20:11:56 2012 +0200 Overlooked a compiler issue. commit cb42aed2436a1ab9100299524df59671364c5112 Author: Alan Garny '' Date: Tue Jul 17 19:40:05 2012 +0200 Some work on our CellML Annotation view plugin '(#78).' commit 8e6482af9457447e9938d6b445360d0e13ae6e48 Author: Alan Garny '' Date: Tue Jul 17 19:01:58 2012 +0200 Some work on our CellML Annotation view plugin '(#78).' commit 1135d0315c628cbad3bfdb04256123df90a926de Author: Alan Garny '' Date: Tue Jul 17 18:58:54 2012 +0200 Some work on our CellML Annotation view plugin '(#78).' commit 287cf217a7f752d13a851b4d031728461fc5169d Author: Alan Garny '' Date: Tue Jul 17 18:13:12 2012 +0200 Pretty much done with adding RDF triples '(#78' and '#90).' Also some minor cleaning up '(#57).' commit 63bfb79f7796b54795764af1f8093579dfa4c9eb Author: Alan Garny '' Date: Tue Jul 17 14:35:54 2012 +0200 Some minor cleaning up '(#57).' commit 8897cc6eaf26afaf924979254413185abed68e17 Author: Alan Garny '' Date: Tue Jul 17 14:30:10 2012 +0200 Some cleaning up and minor refactoring '(#57).' commit 0e01e912501a7f70e6102e63ce2857f9497359ab Author: Alan Garny '' Date: Tue Jul 17 10:49:31 2012 +0200 Some minor cleaning up '(#57).' commit bcad7240b26f0a38123848b9369d11d782e9f63b Author: Alan Garny '' Date: Mon Jul 16 20:30:04 2012 +0200 Some minor cleaning up '(#57).' commit 4d3852796f3a30b0be950af5aa8bb39937510679 Author: Alan Garny '' Date: Mon Jul 16 20:23:27 2012 +0200 Some work on the addition of RDF triples '(#90).' Also some minor cleaning up '(#57).' commit 7d0eaa5d075d97c64041e1f8522e840131251f10 Author: Alan Garny '' Date: Mon Jul 16 20:18:06 2012 +0200 Some work on the addition of RDF triples '(#90).' Also some minor cleaning up '(#57).' commit 3dc9f1efdbf450c23801b90aabdd41f569b4af39 Author: Alan Garny '' Date: Mon Jul 16 19:39:12 2012 +0200 Some work on the addition of RDF triples '(#90).' Also some minor cleaning up '(#57).' commit 9ea27992d50ccef4510c1a1120e863739d3f354f Author: Alan Garny '' Date: Mon Jul 16 16:57:19 2012 +0200 Some work on the addition of RDF triples '(#90).' Also some minor cleaning up '(#57).' commit 9449208c88a66ffdf9d8789d3e02f09f8ac9da32 Author: Alan Garny '' Date: Mon Jul 16 14:24:31 2012 +0200 Some work on the addition of RDF triples '(#90).' Also some minor cleaning up '(#57).' commit 4929bef33f62fb8361abb05da6c25c4af42a6872 Author: Alan Garny '' Date: Sat Jul 14 13:24:34 2012 +0200 Some merging from our master branch. commit 4a8ea2a312971e896a2eaefe8480dfa3f87a32c6 Author: Alan Garny '' Date: Sat Jul 14 13:22:26 2012 +0200 Some minor cleaning up '(#57).' commit abf012b37ea9ac6680d1bc6b9e5241f9b7f17b52 Author: Alan Garny '' Date: Sat Jul 14 11:55:51 2012 +0200 Some minor cleaning up '(#57).' commit 30cb7d19e79f79c21f9b40da5b1398b3d129416a Author: Alan Garny '' Date: Sat Jul 14 09:51:25 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 9e83ef8d60d154d731b14f409f1578b0ce6fea75 Author: Alan Garny '' Date: Sat Jul 14 00:56:36 2012 +0200 Some merging from our master branch. commit 43669ceb106a4191e11075583015827383f286e8 Author: Alan Garny '' Date: Sat Jul 14 00:55:20 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 6ecccf1c02f8a987c002ff703f3ec7bac6c39317 Author: Alan Garny '' Date: Fri Jul 13 20:24:19 2012 +0200 Some merging from our master branch. commit 3c7237f799d44431412832a5372523d87e6980ea Author: Alan Garny '' Date: Fri Jul 13 19:45:53 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 0a956f083f8171798ca8bfd02ae7cfa3cee879ec Author: Alan Garny '' Date: Fri Jul 13 18:24:02 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 054baa755ce0ecd09bed48d6bc80de5cdbc9cde6 Author: Alan Garny '' Date: Fri Jul 13 18:02:42 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 0757e853878347cd4ae7d0c176f2701158882337 Author: Alan Garny '' Date: Fri Jul 13 17:43:33 2012 +0200 Some work on the addition of RDF triples '(#90).' commit a2e217759b8e06caa3e31f1526214b3ac0c63a72 Author: Alan Garny '' Date: Fri Jul 13 17:39:28 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 16c0ca4109392d76dc42d24bea83abcda89a8f67 Author: Alan Garny '' Date: Fri Jul 13 17:39:04 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 2124a47cbf4e7e7d48a45e9f04fe0da5bf332b60 Author: Alan Garny '' Date: Fri Jul 13 17:21:23 2012 +0200 Some work on the addition of RDF triples '(#90).' commit e1a349925994b9e845d2d7f8148e30c981ed5d65 Author: Alan Garny '' Date: Fri Jul 13 15:01:23 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 391955b2aebc38e4e6c0f042cea4790da77968a3 Author: Alan Garny '' Date: Fri Jul 13 13:30:27 2012 +0200 Some work on the addition of RDF triples '(#90).' commit c6ec177e58bdf1f546779d7d477eb2511fe3eaab Author: Alan Garny '' Date: Fri Jul 13 13:12:30 2012 +0200 Some work on the addition of RDF triples '(#90).' commit 701bc9f4289bfd193573b884d2b15802ce88a652 Author: Alan Garny '' Date: Fri Jul 13 11:43:08 2012 +0200 Removed the last flickering issue we had on Mac OS X '(#78).' commit af7c1924f7238d75f6a7e860816ba6bdc2394ca7 Author: Alan Garny '' Date: Fri Jul 13 11:40:09 2012 +0200 Some minor cleaning up '(#57).' commit 089f0592a8847edd7cc106d119c423535635db20 Author: Alan Garny '' Date: Fri Jul 13 10:42:36 2012 +0200 Minor update to avoid a warning with some compilers. commit a348af8f52649e8a4bbcb6b3e3f05e50fdae433d Author: Alan Garny '' Date: Fri Jul 13 10:18:46 2012 +0200 Re-ordered the qualifier and term fields '(#90).' Also some minor cleaning up '(#57).' commit 250fade63a17613907a0242f61c009626d1a1ef9 Author: Alan Garny '' Date: Thu Jul 12 19:50:22 2012 +0200 Some merging from our master branch. commit b837aba109e9cd7383a23da81b51574e2d7fd959 Author: Alan Garny '' Date: Thu Jul 12 19:11:34 2012 +0200 Improved our showing of the cmeta:id value in our CellML element view '(#78)' commit 0c5e153779aa79f8635871ed5278dc214927de81 Author: Alan Garny '' Date: Thu Jul 12 17:01:23 2012 +0200 Keep track of splitter move in the CellML metadata widget '(#78).' commit e49738df422ca721044373207b3f7ec2756f0737 Author: Alan Garny '' Date: Thu Jul 12 16:31:46 2012 +0200 Added an unsupported message for unrecognised metadata in the CellML element view '(#78).' Also some minor cleaning up '(#57).' commit aa72c49b3632651b530287ed62a5a43ed5f65143 Author: Alan Garny '' Date: Thu Jul 12 15:47:59 2012 +0200 Some cleaning up '(#57).' commit c357ab70c86477831127279ee27aa9782c519216 Author: Alan Garny '' Date: Thu Jul 12 15:12:53 2012 +0200 Some minor refactoring '(#57).' commit e05dfd6ddf2be2cbff5ab488fd885bfd3933bb53 Author: Alan Garny '' Date: Thu Jul 12 15:03:28 2012 +0200 Some refactoring '(#57).' commit 839f8b0e6f4bee4c4bf51309f2084a2bf7281e6d Author: Alan Garny '' Date: Thu Jul 12 14:44:41 2012 +0200 Some cleaning up '(#57).' commit bdad8c58fd39cb9919b726de7a53a527bdad4198 Author: Alan Garny '' Date: Thu Jul 12 14:27:25 2012 +0200 Some more refactoring '(#57).' commit e612c944a26d0465260277edbc4ef9baa5fa0c44 Author: Alan Garny '' Date: Thu Jul 12 13:41:10 2012 +0200 Some more refactoring '(#57).' commit e3908ffa7c3b923c4cd299dd59cd87ab48bd55f6 Author: Alan Garny '' Date: Thu Jul 12 13:33:11 2012 +0200 Some more refactoring '(#57).' commit 82fd8baddc0a4d7ff799d8a7c889bd7d243f7f3c Author: Alan Garny '' Date: Thu Jul 12 13:13:28 2012 +0200 Quite a bit of refactoring '(#57).' commit 7113a370c4f002430a22bc28847d8f1f42faac37 Author: Alan Garny '' Date: Thu Jul 12 11:43:26 2012 +0200 Some minor refactoring '(#57).' commit 49c7280289d65458d9fcdac526c85a125713ec51 Author: Alan Garny '' Date: Thu Jul 12 11:32:25 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit 209d17f3fe71ac2f763aaaaa43b30215212c777e Author: Alan Garny '' Date: Thu Jul 12 11:17:32 2012 +0200 Some minor cleaning up '(#57).' commit 980e77253112d4aed49fb8dbf96adb737cdb1e28 Author: Alan Garny '' Date: Thu Jul 12 10:57:47 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit eb6764d77b915c31e1093d21bb28e92281294d48 Author: Alan Garny '' Date: Thu Jul 12 10:40:44 2012 +0200 Some minor refactoring resulting in a better use of the signal/slot approach. commit d82b2d4e65b26c4a8238c1d27bead6820822d514 Author: Alan Garny '' Date: Wed Jul 11 19:25:46 2012 +0200 Worked some more on the CellML element aspect of our CellML Annotation view plugin '(#78).' commit 2f1309fae214b720f31a5d7c8f17b17f19157d28 Author: Alan Garny '' Date: Wed Jul 11 18:31:17 2012 +0200 Fixed an issue with our web viewer in the CellML side of our CellML Annotation view plugin '(#78).' commit c89d35d215df7f462d428e56f2b868ebfd66911e Author: Alan Garny '' Date: Wed Jul 11 18:17:04 2012 +0200 Some refactoring '(#57).' commit f59584670eab4223e3ae5db5c0c74a4227f00af8 Author: Alan Garny '' Date: Wed Jul 11 17:33:34 2012 +0200 Some minor cleaning up '(#57).' commit 4fbcc3cded388c87ecdac6a80b90245b88f4c33d Author: Alan Garny '' Date: Wed Jul 11 17:23:14 2012 +0200 Starting some ''\''heavy'\''' refactoring of the CellML Annotation view plugin GUI when it comes to the CellML element details view side of things '(#57' and '#78).' commit f31d38052484304bd3233d6e9ed581ca6faff332 Author: Alan Garny '' Date: Wed Jul 11 15:09:36 2012 +0200 Was missing some possible ontological terms. commit 59e09f11b2ecdfdc26d75504a0c78c2f25121fb4 Author: Alan Garny '' Date: Wed Jul 11 15:05:02 2012 +0200 Can now efficently retrieve possible ontological terms based on a term given by the user. Just need to work on the GUI side of things now... commit 85afdc5e4c63bbcc5679bb3aa9bf6646f887e40d Author: Alan Garny '' Date: Wed Jul 11 14:43:03 2012 +0200 Some minor cleaning up '(#57).' commit 7961354c21a4f5b59a3c615992f87d1463f98ace Author: Alan Garny '' Date: Tue Jul 10 18:50:11 2012 +0200 Some more work on our CellML Annotation view plugin '(#78).' commit 2d9b54ecb41f03e75011fc50e89399c065f46e27 Author: Alan Garny '' Date: Tue Jul 10 18:05:43 2012 +0200 Some more work on the addition of RDF triples '(#78' and '#90).' commit ff44b88a2db0dfe9656660309ce4703e0bc3cd85 Author: Alan Garny '' Date: Tue Jul 10 18:03:43 2012 +0200 Some more work on the addition of RDF triples '(#78' and '#90).' commit 47ccf5ebbb99a42a35ec5a9e85a8feef662ecf10 Author: Alan Garny '' Date: Tue Jul 10 17:35:31 2012 +0200 Some more work on the addition of RDF triples '(#78' and '#90).' Some minor cleaning up '(#57).' commit 8838793f963411854883608a7aa7327140e77bb8 Author: Alan Garny '' Date: Tue Jul 10 10:50:33 2012 +0200 Some more work on the addition of RDF triples '(#78' and '#90).' Some minor cleaning up '(#57).' commit dbffd519b7397b28e1ee4a3a879855529ffc57ae Author: Alan Garny '' Date: Mon Jul 9 14:56:53 2012 +0200 Some more work on the addition of RDF triples '(#78' and '#90).' Some minor cleaning up '(#57).' commit 15e907fcf63035eb68d80fbf7e2d8f6a8c1a3534 Author: Alan Garny '' Date: Mon Jul 9 13:54:18 2012 +0200 Started work on the addition of RDF triples '(#78' and '#90).' Some minor cleaning up '(#57).' commit 3241c3475d9cd887f856a6f5e5993611ce8b7ec2 Author: Alan Garny '' Date: Mon Jul 9 11:23:02 2012 +0200 Minor GUI improvement to our displaying of RDF triples information '(#78).' commit c1322d76fd36338878305d10c3eb8bc4690fef7c Author: Alan Garny '' Date: Mon Jul 9 09:44:06 2012 +0200 Minor updates to the developer documentation. commit b458fe636c3cc2251a3746a567c3d5468ffe19f1 Author: Alan Garny '' Date: Sun Jul 8 16:54:26 2012 +0200 Previously committed files which were still being worked on, so... reverting them... commit 98255e19cbb3970f34f8b656c542fc121458796e Author: Alan Garny '' Date: Sun Jul 8 16:20:04 2012 +0200 Some merging from our master branch. commit 7e4591bd602c23bfd2fe681b7f82c67046ba7f14 Author: Alan Garny '' Date: Sun Jul 8 16:13:18 2012 +0200 Addressed a flickering issue on Mac OS X '(#78).' See http://www.qtcentre.org/threads/49840-Awful-flickering-with-QGridLayout-on-Mac-OS-X. commit 22edf137ea9372626f330c4ff79e2c3c9526f9ad Author: Alan Garny '' Date: Sun Jul 8 14:25:31 2012 +0200 Fixed another issue related to our web view in the CellML Annotation view plugin '(#78).' We 'hadn'\''t' accounted for the fact that a biomodels.net URL redirects to another URL... commit acf0082c1617fedeefa55b7feb7311ba82407ced Author: Alan Garny '' Date: Sun Jul 8 13:53:52 2012 +0200 Qt keeps updating this translation file, so... commit 0e07f55163de729c923bb4134b5d7227fafe8c00 Author: Alan Garny '' Date: Sun Jul 8 12:53:23 2012 +0200 Improved the updating of our web view in the CellML Annotation view plugin '(#78).' commit f1608772ab5385948d14a41435395eae97741e82 Author: Alan Garny '' Date: Sun Jul 8 02:29:39 2012 +0200 Some merging from our master branch. commit ebb375ea0fd7dcb63aab7f4fb7551f8511dcab1a Author: Alan Garny '' Date: Sun Jul 8 02:26:36 2012 +0200 Minor editing '(#57).' commit 7a4ca9016f07b0f47157510219243461399d4d00 Author: Alan Garny '' Date: Sun Jul 8 02:16:12 2012 +0200 Kind of done with renaming a metadata id '(#78).' We ''\''just'\''' to find out how to actually update the CellML file itself. See 'https://tracker.physiomeproject.org/show_bug.cgi?id=3319.' commit cbae47c96df195134f5419bc44cc1b4817635189 Author: Alan Garny '' Date: Sat Jul 7 21:23:19 2012 +0200 Some minor refactoring '(#57).' commit b846b31941867cf60d0d4e7b4e36134b593286c3 Author: Alan Garny '' Date: Sat Jul 7 19:26:54 2012 +0200 Some minor refactoring '(#57).' commit 552450ead126f181a71569c5b1bbe6b2925126de Author: Alan Garny '' Date: Sat Jul 7 19:16:13 2012 +0200 Some cleaning up and minor refactoring '(#57),' as well as some work on the renaming of some 'metadata'\''s' id '(#78).' commit 9a53cbeeee68bf58b9d52e18f94607dc1f26026f Author: Alan Garny '' Date: Sat Jul 7 18:59:22 2012 +0200 Some cleaning up and minor refactoring '(#57),' as well as fixed a small GUI issue with regards to the looking up of some RDF triple information '(for' some reason, a recent commit cleaned up our web viewer after updating the 'GUI?!...).' Also started work on the renaming of some 'metadata'\''s' id. commit 9283745fcbf0f1a264f7ee790fd312bc344ed111 Author: Alan Garny '' Date: Fri Jul 6 15:02:09 2012 +0200 Fixed a flickering issue on Mac OS X. commit bb8585274b23964458ca212a45f64a48fd9a3456 Author: Alan Garny '' Date: Fri Jul 6 12:57:01 2012 +0200 Replaced our use of 'setVisible()' with 'setUpdatesEnabled().' Indeed, we originally preferred 'setVisible()' to 'setUpdatesEnabled()' because of the latter not preventing flickering on Mac OS X, but it happens that some of our updates generate some flickering using 'setVisible(),' and this on all platforms, while 'setUpdatesEnabled()' 'doesn'\''t' '(except' on Mac OS X, meaning that there is probably not much we can do about 'it),' so... commit 00c0e6460c956f5c987ff9762d6e7efd78183483 Author: Alan Garny '' Date: Thu Jul 5 19:32:55 2012 +0200 Minor editing. commit 69a0690a621ea9ef9511477b10378c17c538e89c Author: Alan Garny '' Date: Thu Jul 5 19:30:42 2012 +0200 Replaced some QToolButtons by some QPushButtons which is what we wanted to use in the first place, but were facing an issue with assigning a QAction to them. Well, we still have the issue, so we assigned some properties ''\''manually'\''' since a QToolButton 'doesn'\''t' look the same as QPushButton on some platforms. commit e34b7a906f681d3cd22fcaa7cac783ddf0cbc12a Author: Alan Garny '' Date: Thu Jul 5 18:59:47 2012 +0200 Added a button to our CellML element details view '(#78)' to switch to the editing mode of the metadata associated to the the CellML 'element'\''s' cmeta:id. Some work on the renaming of a 'metadata'\''s' id, but still need to update the corresponding CellML file. commit fa1c21f3e9368e7ead9b138610a573d531da2cb7 Author: Alan Garny '' Date: Thu Jul 5 13:58:59 2012 +0200 Added some comments and started work on the addition of RDF triples '(#78).' commit cbe2e73a1c56ab3ea84953d95290c5332213f997 Author: Alan Garny '' Date: Thu Jul 5 11:20:15 2012 +0200 Have the BioModels.Net view widget let people know if a RDF triple has been removed '(#78).' commit 1a019ab1cb4d91d0aadcf08d49bd9d2bd3f386bd Author: Alan Garny '' Date: Thu Jul 5 10:46:30 2012 +0200 Some minor cleaning up '(#57).' commit 789b4af97ba88391d8f0d0acb4431046539dd766 Author: Alan Garny '' Date: Wed Jul 4 17:49:40 2012 +0200 Started work on supporting the addition of RDF triples in our CellML Annotation view plugin '(#78).' This has involved creating a new widget for it, as well as supporting the move of the splitter which embeds that new widget, a metadata view widget and a QWebView widget. commit 89a360d1363ed92baf5ac973186ecddf45d0154f Author: Alan Garny '' Date: Wed Jul 4 16:19:37 2012 +0200 Upgraded QScintilla from version 2.6.1 to version 2.6.2. commit 272a0ca73c76a2b5029108857c4a34aa7b34d83a Author: Alan Garny '' Date: Wed Jul 4 15:55:56 2012 +0200 Minor update to the developer documentation. commit 2d80ad8c36af6741ad851ad63d66ad4572c0668e Author: Alan Garny '' Date: Wed Jul 4 15:29:27 2012 +0200 Some work on our CellML Annotation view plugin '(#78)' and the metadata editing GUI side of things in particular '(now' use a QWebViewer to lookup RDF triple 'information)' which involved a bit of refactoring '(#57).' commit d152855f27b3b84d184d29cedf3ad329addac3dd Author: Alan Garny '' Date: Wed Jul 4 11:13:25 2012 +0200 Some GUI improvements to OpenCOR in general and our CellML Annotation view plugin in particular '(#78).' commit 357046ae829fcf67bf942fe7053c9cee076c3617 Author: Alan Garny '' Date: Wed Jul 4 10:20:29 2012 +0200 Some merging from our master branch. commit 822c43b71989d46d5a76b73aa3ca574132f6ec25 Author: Alan Garny '' Date: Wed Jul 4 10:20:03 2012 +0200 Some merging from our master branch. commit 9590f72e0eefde5e5aebff3b13edddf0e62e7343 Author: Alan Garny '' Date: Wed Jul 4 10:01:13 2012 +0200 At some point, I got a bit carried away when cleaning up our common.cmake file. This resulted in the tests not working anymore on Mac OS X. Now, it works again... commit c92a75f7432c3af0429c6e4edc5b3841adeffa26 Author: Alan Garny '' Date: Tue Jul 3 20:35:28 2012 +0200 Improved our new user message widget further '(to' hard code the font size 'wasn'\''t' a good move, especially on Mac OS X since it 'didn'\''t' increase it as we had 'hoped).' commit 35c660bc7d7597c16df395d5f2e9b311cffbb21f Author: Alan Garny '' Date: Tue Jul 3 19:52:11 2012 +0200 Slightly improved our new user message widget. commit 17c779b04a94e3357abb3af16a33085689af1ced Author: Alan Garny '' Date: Tue Jul 3 19:43:51 2012 +0200 Created a new widget to ''\''display'\''' a message for the user and made use of it when a view 'doesn'\''t' support the current file type. Also some minor cleaning up '(#57).' commit 58044f7e170ff7a9b07e5a4c77b83956d16e256b Author: Alan Garny '' Date: Tue Jul 3 16:23:12 2012 +0200 Minor cleaning up '(#57).' commit 70411eb254ea19cd00962532badc9690c0b050d1 Author: Alan Garny '' Date: Tue Jul 3 13:43:31 2012 +0200 Minor cleaning up of the documentation '(#57).' commit a047c9101986d0f44948d40b0e923223e411ecf7 Author: Alan Garny '' Date: Mon Jul 2 19:14:16 2012 +0200 Minor cleaning up '(#57).' commit de649aff434521c12dcfb97064ae14771fe61b49 Author: Alan Garny '' Date: Mon Jul 2 19:09:55 2012 +0200 Can now remove a RDF triple from a set of RDF triples related to a given cmeta:id '(#78).' Also some minor cleaning up '(#57).' commit a66056d8f124f4b70bc3dd19ccb9c5adef4ccaff Author: Alan Garny '' Date: Sun Jul 1 16:15:07 2012 +0200 Merged LLVM and Clang which builds fine. Now, the question is whether we can actually use Clang to generate LLVM assembly code '(rather' than do it ourselves 'manually).' commit 4845caf90ded8dcef60036800c12ad77f5f05f1c Author: Alan Garny '' Date: Sun Jul 1 14:59:39 2012 +0200 Some merging from our Clang branch. commit 3c5c39a6926dfcac85fecaa9673b91500a04d4a8 Author: Alan Garny '' Date: Sun Jul 1 14:39:03 2012 +0200 Argh, had got the copying of the config files wrong. commit fbce1bb8a6836fe6af4a44e57adceedebff4bb46 Author: Alan Garny '' Date: Sun Jul 1 13:23:00 2012 +0200 Have gone quite a long way trying to build Clang as a plugin which depends on the LLVM plugin, but kind of hitting an unsolvable problem now '(no' default constructor for 'BasicBlock)' as a result of trying to export/import classes. A bit strange, so maybe I overlooked something 'somewhere?...' Whatever the case, right now, 'it'\''s' a bit crazy because I had export/import loads of LLVM classes in order for Clang to build. This means that it would a lot of maintenance work. Still, I am committing this for my own record. As for what next, there are two choices: '1)' either stick to what we currently have '(i.e.' rely on LLVM 'only)' or merge LLVM and Clang into one plugin '(not' what I want, but that might solve the export/import 'problem).' commit 8b978bb7366ecf583f5ac63439970deb4d7d8a1e Author: Alan Garny '' Date: Thu Jun 28 19:28:55 2012 +0200 Some merging from our master branch. commit 140f871b27b92d7e03af381c66908a0f20e85a06 Author: Alan Garny '' Date: Thu Jun 28 13:07:02 2012 +0200 Minor GUI improvement for our CellML Annotation view plugin '(#78).' commit 053ee4757debb873a08c819c230c043c25edbd26 Author: Alan Garny '' Date: Thu Jun 28 11:49:35 2012 +0200 Done with handling the clearing of some/all the metadata of a CellML file '(#78).' Note that no serialisation back to the CellML file is done yet '(not' least because none would be 'done!),' so 'it'\''s' all at the GUI level at the moment. Also some minor refactoring '(#57).' commit 2ebe48f21d969ae6a7ec25e9bd7617350df0e237 Author: Alan Garny '' Date: Thu Jun 28 10:26:54 2012 +0200 Display the model-level metadata '(i.e.' cmeta:id == '"")' when there is no cmeta:id for a CellML element. commit fe4ecff8e7fde7bdb06ae9b1d412b86a0495c86c Author: Alan Garny '' Date: Thu Jun 28 10:18:25 2012 +0200 Minor improvement to our handling of the removal of some/all the metadata of a CellML file '(#78).' commit b805ae5166a869a097fe25f6a78e035c1e4e8468 Author: Alan Garny '' Date: Wed Jun 27 18:22:40 2012 +0200 Done with handling the removal of some/all the metadata of a CellML file '(#78).' Note that no serialisation back to the CellML file is done yet, so 'it'\''s' all at the GUI level at the moment. commit 1c6ca5efb9047eb559a75021d520777d28ae487d Author: Alan Garny '' Date: Wed Jun 27 15:35:24 2012 +0200 Some minor refactoring for our tree view widget '(#57),' as well as some minor improvement to our CellML Annotation view plugin '(#78).' commit 4156b3d9783aec3396874f9736f37f7cd742da7c Author: Alan Garny '' Date: Wed Jun 27 15:00:57 2012 +0200 Some work on removing metadata from a CellML file '(#78),' resulting in some refactoring '(#57).' commit d66ebec3005fd122591bbb69346d3dd3c0ff2f85 Author: Alan Garny '' Date: Tue Jun 26 17:23:24 2012 +0200 Improved our addition of a metadata item '(#78).' commit 3378b7dd58309579877d143af8b3117b49e3d2e4 Author: Alan Garny '' Date: Tue Jun 26 16:36:30 2012 +0200 Added a reminder about an identifiers.org functionality which is not yet available. commit 299803c577c72ec2a446454cb5befc32e17aa98e Author: Alan Garny '' Date: Tue Jun 26 15:30:44 2012 +0200 Resuming our work on the creation/editing of metadata '(#78).' commit ed4ca0c1061b4bf169c23ba122bd79dabdcfe32a Author: Alan Garny '' Date: Tue Jun 26 13:28:00 2012 +0200 Minor fix for our 'plugin'\''s' global header file. commit d590a5d085a56b72c8fed52ee980c3db1891bc19 Author: Alan Garny '' Date: Tue Jun 26 12:57:51 2012 +0200 Minor fix for our 'plugin'\''s' global header file. commit d26c9491c3029316ddae5ab8f0d90faf14b2f365 Author: Alan Garny '' Date: Tue Jun 26 11:04:19 2012 +0200 Some merging from our master branch. commit 406bd261711dd17176356a15aeae0a7735936784 Author: Alan Garny '' Date: Tue Jun 26 11:03:24 2012 +0200 Some merging from our Clang branch. Note that we merged everything but the Clang-specific bits. So, the merge contains some cleaning up that was done in the Clang branch. commit 390beb42bed78dec6c0a6a7401ec53f56d3da811 Author: Alan Garny '' Date: Mon Jun 25 23:32:38 2012 +0200 Minor refactoring to avoid having to use QtGlobal in our global header files for plugins since use of QtGlobal may be incompatible with some third-party libraries '(e.g.' Clang which defines a function called 'foreach())' '(#57).' commit 19cc7d1475a8c228e2eb91b5dfb4daddb64ff33c Author: Alan Garny '' Date: Mon Jun 25 18:31:33 2012 +0200 Keep track of a change to a cmeta:id value of a CellML element, resulting in a CellML file to be considered modified, and in the mode and views tabs to be disabled '(indeed,' we 'don'\''t' want to allow the user to switch modes or views while a CellML file is 'modified).' Some minor cleaning up '(#57).' commit d743c31832f3678c0b8727c168d0f47c9d598761 Author: Alan Garny '' Date: Sun Jun 24 23:12:32 2012 +0200 Some LLVM-related cleaning up. commit ecaa5af7c1b1d3443011d33bc7cc6962219f6936 Author: Alan Garny '' Date: Sat Jun 23 13:28:45 2012 +0200 Minor editing of a comment. commit fabe8e20430b52e09d315abadccf29a64c06f308 Author: Alan Garny '' Date: Sat Jun 23 02:13:24 2012 +0200 Started work on having another go at using Clang '(#98).' commit b71ce9d7d86a0b280dd67ed777a29531e327d68a Author: Alan Garny '' Date: Fri Jun 22 18:05:35 2012 +0200 Started work on keep track of changes to a CellML file by first keeping track to changes to a CellML 'element'\''s' cmeta:id value '(#78).' commit c19f59551451c9103b07aef2272e17704686c909 Author: Alan Garny '' Date: Fri Jun 22 16:58:05 2012 +0200 Some more cleaning up of common.cmake for Mac OS X. commit f235ad56e7d0aed9beeb24c78ffc1f5dc242ff7d Author: Alan Garny '' Date: Fri Jun 22 15:47:06 2012 +0200 A couple of changes '(as' a result of switching to Qt '4.8.1?)' required to get all the references to Qt from a plugin right. commit 4ca122f45f0a205f4433c39ab99414a0997f74ff Author: Alan Garny '' Date: Fri Jun 22 15:01:45 2012 +0200 Fixed what I think was an issue with plugins in a deployed version of OpenCOR on Mac OS X '(think,' because I 'can'\''t' test it since the only Mac OS X machine I have access to is a development machine and therefore has all of 'OpenCOR'\''s' dependencies on 'it...).' commit 162d0c6d95ff4e07c8e26a2b85b1584fe0f57bd8 Author: Alan Garny '' Date: Fri Jun 22 13:59:09 2012 +0200 We previously tried to be too efficient with regards to setting the locale and it broke a few things, so... commit d1eac5a1eca2c4f5e9fd1a156fd25cecdff40a06 Author: Alan Garny '' Date: Fri Jun 22 09:56:40 2012 +0200 Update the contact email address for 'OpenCOR'\''s' packaging. commit ac79d3f911a9cc10d3692c2f3bb0b59c9235789f Author: Alan Garny '' Date: Thu Jun 21 22:48:56 2012 +0200 Updated our common CMake file to support Qt 4.8.1 rather than 4.8.0. commit a10035d7981086462fc90ef91f2f376cc812d6f7 Author: Alan Garny '' Date: Thu Jun 21 19:06:17 2012 +0200 Improved our support for different locales. commit c6c53d38d807f708ea0be1e45a81b77b27631d80 Author: Alan Garny '' Date: Thu Jun 21 18:12:22 2012 +0200 Slight improvement to the code for looking up some metadata from a cmeta:id value. commit 52ef7115cddd085b05db73fc38deaedff1c07ae5 Author: Alan Garny '' Date: Thu Jun 21 11:30:01 2012 +0200 Slight improvement to the code for looking up some metadata from a cmeta:id value. commit a8de2679347cb8826ad57fc7a033cd3f3b2bffd4 Author: Alan Garny '' Date: Thu Jun 21 10:09:40 2012 +0200 Some work on the GUI side of things for the CellML Annotation view '(#78).' commit 074f45927d517e9d3c3edf36dfb2f38b5d8cbbcf Author: Alan Garny '' Date: Wed Jun 20 18:10:39 2012 +0200 Some work on the GUI side of things for the CellML Annotation view '(#78).' commit 797b0b3c770f4dbee3650e4c9ea7012b5877887d Author: Alan Garny '' Date: Wed Jun 20 16:44:05 2012 +0200 Some work on the GUI side of things for the CellML Annotation view '(#78).' commit be7744b7082055654acaab5ddf104cd7893a92e9 Author: Alan Garny '' Date: Wed Jun 20 15:36:20 2012 +0200 Some work on the GUI side of things for the CellML Annotation view '(#78).' commit 30ea3b4b84bcd928d9405dd269fbe310c451c761 Author: Alan Garny '' Date: Wed Jun 20 09:58:30 2012 +0200 Minor GUI update as a result of our work on the CellML Annotation view '(#78).' commit ba3776d992a371a6d530843662567c79a4769f73 Author: Alan Garny '' Date: Tue Jun 19 18:31:50 2012 +0200 Some work on the CellML Annotation view '(#78' and '#90).' commit 54f7f7377162cf53cfcdabe86a233823d96bf47f Author: Alan Garny '' Date: Tue Jun 19 17:58:32 2012 +0200 Minor cleaning up '(#57).' commit 4126e80ab9cab276aa59c6db9bd5d60a0f02eb87 Author: Alan Garny '' Date: Tue Jun 19 15:20:43 2012 +0200 Some refactoring work '(#57)' to make it possible to work on the creation/editing of CellML annotations '(#78).' commit 5137f1b1d8cbc65c52f25fcfc225a2c56b63a1f7 Author: Alan Garny '' Date: Mon Jun 18 13:00:31 2012 +0200 Minor update to a BioModels.Net qualifier description. commit 321ffca5c2a90dbbdafbe2690b862e26b6876952 Author: Alan Garny '' Date: Sun Jun 17 21:00:17 2012 +0200 Minor cleaning up '(#57).' commit c7c14f5ea63be551bd16b6755052f32291115231 Author: Alan Garny '' Date: Sun Jun 17 20:58:50 2012 +0200 Further improvement to the GUI side of the CellML Annotation view when translating it. We were refreshing calls to identifiers.org while there was no need to do so. commit 41b7f6863f1c0f83b191073288fb0af0f0bd42be Author: Alan Garny '' Date: Sun Jun 17 20:38:55 2012 +0200 Minor cleaning up '(#57).' commit 7ddbab2da70f08e0e3821ebfbb31d6ebbb11b1b9 Author: Alan Garny '' Date: Sun Jun 17 20:36:09 2012 +0200 Minor cleaning up '(#57).' commit 97626c139ce8ff223ef12e44a4e9a57a9c9e8aaa Author: Alan Garny '' Date: Sun Jun 17 20:34:02 2012 +0200 Some work which improves the GUI side of the CellML Annotation view when translating it. Indeed, when in CellML Annotation view, to retranslate OpenCOR would result in 'updateGui()' being called which is fine except if another RDF triple information besides the first RDF 'triple'\''s' id was selected. If another RDF triple information was selected, then the retranslation would revert things to the first RDF 'triple'\''s' id... commit b896a1ecf5a17ec4d86930b333731e2a01e5efc7 Author: Alan Garny '' Date: Sun Jun 17 19:40:29 2012 +0200 Done with the looking up of a BioModels.Net qualifier '(closes' '#97).' commit 658f8751c5d820214609f28534314ba52bfc15ed Author: Alan Garny '' Date: Sun Jun 17 12:22:45 2012 +0200 Some work towards looking up a BioModels.Net qualifier '(#97)' by adding an SVG diagram to help with the description of a model/biology qualifier. commit 5d01914df66fa862e29fb021ab98b9800933991e Author: Alan Garny '' Date: Sat Jun 16 00:43:44 2012 +0200 Some work towards looking up a BioModels.Net qualifier '(#97)' by mainly adding some translations. commit 1c0c859e1504c7a33d893ba61b8d7bac519b5e5f Author: Alan Garny '' Date: Fri Jun 15 18:41:08 2012 +0200 Some work towards looking up a BioModels.Net qualifier '(#97).' commit 55fba3f44dd3d617d2a58dcd4f9cf37f4314b750 Author: Alan Garny '' Date: Fri Jun 15 11:33:35 2012 +0200 Some work towards looking up a BioModels.Net qualifier '(#97).' commit a3623dc8cd946a778c2560aed076d92250cc747a Author: Alan Garny '' Date: Fri Jun 15 09:59:31 2012 +0200 Slight GUI improvement which prevents a CellML annotation lookup from being refreshed unnecessarily '(#78).' commit ec7b92d3ef2fab2ce653c26f0d2c86882de10985 Author: Alan Garny '' Date: Fri Jun 15 09:49:28 2012 +0200 Minor cleaning up '(#57).' commit 44cdf9d938bcc846a67433d46f4365f78de3495c Author: Alan Garny '' Date: Thu Jun 14 21:30:18 2012 +0200 Nicer solution than the one implemented in b684f2a00b524a7c93a7f689bc37e62b4197b21f. commit a2bd1f364627bfa81a60d73d1e67d1d8311211e9 Author: Alan Garny '' Date: Thu Jun 14 19:00:20 2012 +0200 Fixed a nasty issue with regards to opening a file without any other file being already opened. commit c320b432638235650977d7af4870ccc9685b93aa Author: Alan Garny '' Date: Thu Jun 14 17:48:39 2012 +0200 Fixed a nasty issue regarding the updating of the CellML Annotation view, an issue which only occurred on Mac OS X when double clicking on a CellML file '(resulting' in a new instance of OpenCOR being started and letting the original instance know that a file had to be 'opened).' commit c356856b19aff1abcb9d6a4e8a4230d9b20f3589 Author: Alan Garny '' Date: Thu Jun 14 15:44:32 2012 +0200 Minor cleaning up '(#57).' commit ab40c50aff4e2d17e989c36c4fd90ceeda3692f1 Author: Alan Garny '' Date: Thu Jun 14 15:08:40 2012 +0200 Improved our central widget '(Core' 'plugin)' when it comes to the opening of a file. commit 533d85e40ad65f3c958a221d913e56379f9956e6 Author: Alan Garny '' Date: Thu Jun 14 15:07:24 2012 +0200 Minor improvement which really allows to run only one instance of OpenCOR at one time. Indeed, before if we had two copies of OpenCOR in two different folders, then we could run both copies simultaneously... commit 752b2a4bc9fb6d036335278a434cb060d29faffa Author: Alan Garny '' Date: Thu Jun 14 14:29:18 2012 +0200 Some minor cleaning up '(#57).' commit 10f5acad6a585d551eaafd3dd486ef9a0f8cb039 Author: Alan Garny '' Date: Thu Jun 14 13:33:53 2012 +0200 Some minor cleaning up '(#57).' commit d85eab10c7a325f71bc6b15358024104a63da56c Author: Alan Garny '' Date: Thu Jun 14 11:36:46 2012 +0200 Some minor cleaning up '(#57).' commit db37a1176f0d00c242df3f51a5a13e65210d1786 Author: Alan Garny '' Date: Thu Jun 14 10:44:14 2012 +0200 Some minor cleaning up '(#57).' commit ee2e61c1cbe123478812a9ade989a2715b852755 Author: Alan Garny '' Date: Thu Jun 14 10:32:15 2012 +0200 Some minor cleaning up '(#57).' commit eac81eba7df8e111f1a6bc93c2828ba11ac86cb6 Author: Alan Garny '' Date: Thu Jun 14 10:26:06 2012 +0200 Some minor cleaning up '(#57).' commit ae973cbef01974d7cb241f6dcd7f8310aeaa9366 Author: Alan Garny '' Date: Wed Jun 13 18:20:23 2012 +0200 Improved the fact that closing a file should free all the views associated with it '(#96)' by making sure that a view exists for the file. Indeed, before if no view existed for a file / view plugin combination, then a view would be created before being deleted which was really useless. Now, we check whether there is already a view '(see' 'centralwidget.cpp).' commit 564f14bc17658a12e5a3195330da61d9b84aaed1 Author: Alan Garny '' Date: Wed Jun 13 17:56:54 2012 +0200 Minor cleaning up '(#57).' commit e49715f79e05cd4fd47660d0afd783e622963df8 Author: Alan Garny '' Date: Wed Jun 13 17:02:06 2012 +0200 Fixed a small issue with regards to '#96.' commit 9a81dd7d358d08a3d5f0d79601429317bff8b9ea Author: Alan Garny '' Date: Wed Jun 13 14:53:13 2012 +0200 Done with the fact that closing a file should free all the views associated with it '(closes' '#96).' Also some cleaning up '(#57).' commit 7083edae0d869b21e849f33ebc92054302810468 Author: Alan Garny '' Date: Wed Jun 13 11:02:21 2012 +0200 Minor cleaning up '(#57).' commit 5ad2b1a40e092cf93b0b618ed38c85cc05d5e080 Author: Alan Garny '' Date: Tue Jun 12 21:20:32 2012 +0200 Some minor cleaning up '(#57).' commit 4c79bd16aa3670ad5ac8b1b092e2b93201c427ce Author: Alan Garny '' Date: Tue Jun 12 20:36:14 2012 +0200 Minor fix '(#96).' commit 1b35d0e034b096ff295d3bf3880877024832dfca Author: Alan Garny '' Date: Tue Jun 12 20:28:37 2012 +0200 Set things up for freeing everything when closing a file '(#96)' and it all works fine with the CellML Annotation view. Just need to do finish the work by taking care of the Raw CellML, Raw and Single Cell Simulation views... Otherwise, also some minor cleaning up '(#57).' commit 31c4da2190873d50509c8d9106bef70506dcbc7e Author: Alan Garny '' Date: Tue Jun 12 20:13:48 2012 +0200 Minor cleaning up '(#57).' commit c5fa554559145b1bbab547b4aa2ef19a8c8ed2f2 Author: Alan Garny '' Date: Tue Jun 12 18:31:54 2012 +0200 This properly closes issue '#95' and not the previous commit which was completely 'useless!' commit 47370b6fc0653e13fb9845d4d8e7995ea456eeac Author: Alan Garny '' Date: Tue Jun 12 17:44:00 2012 +0200 Closes '#95.' commit db0ddef0becf4eda6e00b391d6aae4e0b92e0f88 Author: Alan Garny '' Date: Tue Jun 12 17:21:28 2012 +0200 Updated the developer documentation as a result of upgrading XCode to version 4.3.3. commit 1a3770f1cceaa043cf916bdb4220f68f4b0cbb20 Author: Alan Garny '' Date: Tue Jun 12 17:04:16 2012 +0200 Some work on issue '#94.' commit 465e610e50b6974a7bc2c6566984d52d4ca61fb8 Author: Alan Garny '' Date: Tue Jun 12 15:02:56 2012 +0200 Now use the version of QtSingleApplication used by Qt Creator since it implements a few things that should help us with issue '#94.' commit cea6ffdb0c90baa512ff5d4d4cd21525e6da3b7d Author: Alan Garny '' Date: Mon Jun 11 21:06:33 2012 +0200 Some cleaning up making it ''\''faster'\''' to build tests '(#57).' commit 5e12a4868ab91ee15b0f8d499e447ef842e21a65 Author: Alan Garny '' Date: Mon Jun 11 20:55:45 2012 +0200 Addressed an issue with building tests on Windows '(after' having fixed something on Mac OS 'X!).' commit a4a15374dfe98f6abbb6eb2bfc279ee40da1f385 Author: Alan Garny '' Date: Mon Jun 11 17:11:18 2012 +0200 Addressed an issue with building tests on Mac OS X '(probably' also valid on 'Linux?...).' commit cc2139670e2d1e890f6957868f8bf6859cb82210 Author: Alan Garny '' Date: Sun Jun 10 20:55:43 2012 +0200 Support the opening of OpenCOR-associated files from the file manager '(closes' '#94).' Also some minor cleaning up '(#57).' commit d71857b38d455948e001336149b5d1f7825bf379 Author: Alan Garny '' Date: Sun Jun 10 00:23:50 2012 +0200 Working on the opening of OpenCOR-supported files from the file manager '(#94).' commit eca984f429e66f342a8279d8bfec33d66f2654a3 Author: Alan Garny '' Date: Sat Jun 9 19:04:20 2012 +0200 Working on the opening of OpenCOR-supported files from the file manager '(#94).' commit 8cbbfbd039a12ef729e41f0932a93ad0fc46af77 Author: Alan Garny '' Date: Fri Jun 8 20:57:32 2012 +0200 Addressed a small issue of an RDF 'triple'\''s' id containing %3A which should have been replaced by ''\'':'\''' '(#92).' commit ac0f0a17b28d64e2d1226efb1377b0676f9c52c5 Author: Alan Garny '' Date: Fri Jun 8 18:18:54 2012 +0200 Some minor refactoring '(#57).' commit 9bb729a43fe3f37a6ddbbf7a46117c42b50bef96 Author: Alan Garny '' Date: Fri Jun 8 17:36:15 2012 +0200 Allow to look up a resource in our BioModels.Net view for our CellML Annotation view '(#92).' commit 93ddef2beb331a08399d9473e2d3bf6cf18f41df Author: Alan Garny '' Date: Fri Jun 8 16:21:51 2012 +0200 Some trivial refactoring '(#57).' commit bbfd19ae631ad43b473db667e5b7280d0e5509f5 Author: Alan Garny '' Date: Fri Jun 8 15:14:59 2012 +0200 Fixed another GUI issue in our BioModels.Net view for our CellML Annotation view '(#92).' commit dc04dc0ce41f91eae0aab0e11de7fe2fde1a2947 Author: Alan Garny '' Date: Fri Jun 8 14:53:27 2012 +0200 Fixed a few GUI issues in our BioModels.Net view for our CellML Annotation view '(#92).' commit ecbd11c25accc473d44c228fc1aed0dcdeda03c7 Author: Alan Garny '' Date: Fri Jun 8 13:56:22 2012 +0200 Done with supporting identifiers.org URIs ''\''natively'\''' '(closes' '#93).' commit 0a995c7cf289f174015181c775b09b42ec85aa49 Author: Alan Garny '' Date: Fri Jun 8 13:09:37 2012 +0200 Some work on supporting identifiers.org URIs ''\''natively'\''' '(#93).' commit 7e17007048c7ab45545cd1e670fc71773a605ae6 Author: Alan Garny '' Date: Fri Jun 8 11:25:44 2012 +0200 Some work on supporting identifiers.org URIs ''\''natively'\''' '(#93).' commit 54000f7fb3216adf1eb4ccfe0bd71e2443103aee Author: Alan Garny '' Date: Thu Jun 7 17:46:42 2012 +0200 Slight improvement for testing things on Linux without first having to deploy OpenCOR. commit 470b907ee05f09b6c4761793ae6f3e837e43d776 Author: Alan Garny '' Date: Thu Jun 7 17:29:55 2012 +0200 Make sure to deploy the GIF and JPEG image format plugins so that we can view GIF and JPEG images from websites on Windows and Linux '(it'\''s' automatically deployed on Mac OS 'X).' commit ee9c3add479c8361948e8ba33a276dc8df45a05e Author: Alan Garny '' Date: Thu Jun 7 16:33:58 2012 +0200 Some minor improvements to our CellML Annotation View plugin when an error occurs when trying to look up a MIRIAM URN '(#92).' commit de4c12a7944555a0a17b9a0c36927f0f2457d3a6 Author: Alan Garny '' Date: Thu May 31 19:05:50 2012 +0200 Made the row of the selected MIRIAM URN bold '(#92).' commit d5be0c971877b41b5fe55065e7467875cd74b395 Author: Alan Garny '' Date: Thu May 31 18:37:13 2012 +0200 Some work on supporting the looking up of a BioModels.Net id from our BioModels.Net view '(#92),' and some more work also on our CellML Annotation View in general '(#78).' commit d7cf8ba31777b172b584a213b6d4e4c67b2a5a2e Author: Alan Garny '' Date: Thu May 31 12:22:43 2012 +0200 Some work on supporting the lookin up of a BioModels.Net id from our BioModels.Net view '(#92).' commit 3eab9f4e04abdce3fe9682cebc46a8a0fff4970b Author: Alan Garny '' Date: Thu May 31 12:14:41 2012 +0200 Starting work on supporting the lookin up of a BioModels.Net id from our BioModels.Net view '(#92).' commit 2957ac07a55ef89867e39858337ab5213e9f57f4 Author: Alan Garny '' Date: Wed May 30 17:55:58 2012 +0200 Minor improvement to our BioModels.Net view '(#92).' commit 18f6dadbabf91077b63ae38be21e669a9306dfc1 Author: Alan Garny '' Date: Wed May 30 17:47:09 2012 +0200 Some work on our BioModels.Net view '(#92).' Also some cleaning up and refactoring here and there '(#57).' commit ac1acf7f6e4d9f8558ea0eab4a4316b037e222c0 Author: Alan Garny '' Date: Wed May 30 15:16:47 2012 +0200 Minor improvement to our translation strategy. commit f99ac060074307c0391688d47aa7d7446e12fbd5 Author: Alan Garny '' Date: Wed May 30 14:27:32 2012 +0200 Some work on our CellML Annotation View plugin '(#78).' commit 20603670aa7e11a7f752520f9d6f5a8944a86998 Author: Alan Garny '' Date: Wed May 30 14:02:34 2012 +0200 Fixed an issue with the loading of plugins following our recent improvement '(see' commit '5b85057cebc0c99aa384e65f2ec1b4dbf3fc8981).' commit 3ab9a02ebdfa7d9c2d29f6a0e74808c925ba66b5 Author: Alan Garny '' Date: Wed May 30 14:00:37 2012 +0200 Some minor refactoring '(#57).' commit b9681bdb7d3120c9ce332ac5a5a28861872d74ee Author: Alan Garny '' Date: Wed May 30 10:47:32 2012 +0200 Some minor refactoring '(#57).' commit aca56be9010edeab8851b31887b0cc052dd8d296 Author: Alan Garny '' Date: Tue May 29 18:30:48 2012 +0200 Some cleaning up '(#57).' commit f9ea8f42e740c0465ae948ed10d5428d47b1eda2 Author: Alan Garny '' Date: Tue May 29 18:14:57 2012 +0200 Our plugin manager used to keep track of all the plugins, but not of their dependency '(even' though it would load the plugins in the right 'order).' This means that in some cases, retranslation 'wouldn'\''t' work for some plugins '(e.g.' the CellMLAnnotationView plugin since it was considered to be ''\''loaded'\''' before the Core 'plugin).' Now, 'it'\''s' all fine... commit 9615fc75e8e2b0ee1262f9577f654961d4598e59 Author: Alan Garny '' Date: Tue May 29 16:59:26 2012 +0200 Some ''\''major'\''' cleaning up '(#57).' commit 2b7f4593457c0625fd46e44480cacc64371f36aa Author: Alan Garny '' Date: Tue May 29 15:07:12 2012 +0200 Some minor cleaning up '(#57),' as well as some work on our CellML Annotation view '(#78).' commit 306c3071fa8c394c911842ea04cdb6668c4a6219 Author: Alan Garny '' Date: Tue May 29 11:36:43 2012 +0200 Some minor cleaning up '(#57).' commit b5e6dfa7915e6716f8b3a4d672713b587e7dcb24 Author: Alan Garny '' Date: Mon May 28 17:57:12 2012 +0200 Some work on our BioModels.Net view '(#92)' for our CellML Annotation view '(#78).' commit f04d6c9c38c9b686931bd1721fe87ead4a0fcc0a Author: Alan Garny '' Date: Mon May 28 17:33:27 2012 +0200 Some work on our BioModels.Net view '(#92)' for our CellML Annotation view '(#78).' commit 52caa5a7652ec5866bb2ea788fe6c34f38cf8e59 Author: Alan Garny '' Date: Mon May 28 16:13:30 2012 +0200 Working on a BioModels.Net view '(#92)' for our CellML Annotation view '(#78).' commit 7c6773e08efe8b87f157239e3e5eb71689ad9505 Author: Alan Garny '' Date: Mon May 28 15:48:59 2012 +0200 Some minor refactoring '(#57).' commit 1dc388c21031f2791fec0f8d6d5fb0adab3c4b90 Author: Alan Garny '' Date: Mon May 28 14:59:19 2012 +0200 Can now determine the type of an RDF triple, i.e. whether it refers to a BioModels.Net qualifier or to something unknown. In the former case, we can determine whether 'it'\''s' a model or a biology qualifier. As for the RDF 'triple'\''s' object, we can recognise both MIRIAM URNs and identifiers.org URIs '(which' we convert into a MIRIAM 'URN).' commit e7beb7bf5db0c4daf1446635b5f86596a8726065 Author: Alan Garny '' Date: Sun May 27 21:39:37 2012 +0200 Built all the different version of the LLVM plugin. commit f7e3f476405a4b27aa647ee4c023972aaeb20068 Author: Alan Garny '' Date: Sun May 27 21:38:35 2012 +0200 Forgot to edit one LLVM file which prevented MSVC from building a release version of LLVM. commit 2928e6f3334b113287c76a9befdc2128e82389ee Author: Alan Garny '' Date: Sun May 27 19:48:52 2012 +0200 Addressed a small issue which prevented us from building LLVM on Linux. commit ecc69cbd8a5424b86892b16679e800fc08cbcbb9 Author: Alan Garny '' Date: Sun May 27 17:39:23 2012 +0200 Some minor improvements for our Windows build. commit 63981599d358675af771d421708558e8aa5021f8 Author: Alan Garny '' Date: Sun May 27 08:21:25 2012 +0200 Upgraded LLVM from version 3.0 to 3.1. Right now, we have everything to build LLVM on Windows, but it should also work on Linux and Mac OS X. commit 1b5630a0362dd29b3fb3543b922b27b53f14b538 Author: Alan Garny '' Date: Thu May 24 10:28:52 2012 +0200 Some minor cleaning up '(#57).' commit 15676780f0bb65636e6c46600c92feb70ac90aec Author: Alan Garny '' Date: Wed May 23 17:53:43 2012 +0200 Minor cleaning up to please gcc on Linux '(#57).' commit 543e409aab9df41e8b10b55eefb6ded502953cd8 Author: Alan Garny '' Date: Wed May 23 17:48:19 2012 +0200 Determine the type of RDF triples we are dealing with '(#73).' commit a87d67ef6941c559d9016cfd4259301b65b21f70 Author: Alan Garny '' Date: Wed May 23 17:19:24 2012 +0200 Some minor cleaning up '(#57).' commit ccc9ff81f7396b6bedd7d3dab184ed0b20b458be Author: Alan Garny '' Date: Wed May 23 10:44:39 2012 +0200 Minor improvement to our tab order strategy '(#78).' commit f2b377300d82943670720ac415ba978c70acb3c2 Author: Alan Garny '' Date: Wed May 23 10:40:39 2012 +0200 Addressed a tab order issue between the list of CellML elements and the details GUI '(#78).' commit 2aeb0781d50158ffa32b2ea129348c711a2c22f3 Author: Alan Garny '' Date: Wed May 23 10:37:39 2012 +0200 Some minor cleaning up '(#57).' commit 20184aed16e9d00a53761fb25fc2e842bdd55b7e Author: Alan Garny '' Date: Wed May 23 08:56:50 2012 +0200 Improvements '(hopefully!)' to the GUI side of the CellML Annotation view '(#78).' commit cac3020502c6fcb2dd4aabe4e95b505856261ac1 Author: Alan Garny '' Date: Tue May 22 19:39:46 2012 +0200 Some minor cleaning up '(#57).' commit 6673aaf1aa868b9beab8b2c99baaa9ebcba0cf64 Author: Alan Garny '' Date: Tue May 22 19:35:55 2012 +0200 Improvements to the GUI side of the CellML Annotation view '(#78).' commit 5bbede4adb6aa5e1c56952e620bdd99fed7a3ca9 Author: Alan Garny '' Date: Tue May 22 19:21:13 2012 +0200 Improvements to the GUI side of the CellML Annotation view '(#78).' commit 259970206152cfa9260dae5f48dd3b088ae53ef2 Author: Alan Garny '' Date: Tue May 22 18:16:47 2012 +0200 Some cleaning up '(#57).' commit 7e0faf243b44402e0b7fe80a20a8f3a6956469e7 Author: Alan Garny '' Date: Tue May 22 18:14:23 2012 +0200 Some cleaning up '(#57).' commit a59f7ce12485f904ecfbda345b772f339c1c9ba6 Author: Alan Garny '' Date: Tue May 22 18:13:57 2012 +0200 Some cleaning up '(#57).' commit 54301d28d7c8c4859f92ac7aae3e72335cbab56a Author: Alan Garny '' Date: Tue May 22 11:31:16 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Minor improvement to our 'GUI'\''s' default settings. commit 17b60f06b752c853987f36e15888016693f04f9e Author: Alan Garny '' Date: Tue May 22 10:06:37 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Now, 'don'\''t' show any metadata if a CellML element 'doesn'\''t' have a cmeta:id value. commit dc08ab6bfb9044b7a794bd24785a655d67b6d6bf Author: Alan Garny '' Date: Tue May 22 09:55:19 2012 +0200 Minor fix for Mac OS X. commit 6de47549e07230e2dae4de3242e97ed58f5f5f67 Author: Alan Garny '' Date: Mon May 21 18:13:33 2012 +0200 Working towards retrieving the type of a group of RDF triples '(#78).' commit 4c1ee4a79f31e55d0a6f89719af03de67229adae Author: Alan Garny '' Date: Mon May 21 17:45:03 2012 +0200 A bit of refactoring '(#57)' for our CellML Annotation view for a CellML file '(#78).' commit 0ff51521cd1a708dbee607ffb7cb3df36f3cc92d Author: Alan Garny '' Date: Mon May 21 16:02:33 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Now uses a combo box '(filled' with metadata 'ids)' to change the value of a cmeta:id field. commit f8e4972e0939487e5099c41f19ed16e1b1497e6c Author: Alan Garny '' Date: Mon May 21 14:16:02 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Now, we update the metadata associated with a particular CellML element when modifying its cmeta:id value. Also improved the GUI side of things with regards to responsiveness. commit 9014ad674d8bfe948d711ecec171843c7dcd332a Author: Alan Garny '' Date: Mon May 21 10:40:17 2012 +0200 Some minor refactoring '(#57).' commit eba39b15e3f429646b28076d5b4dfd39635a3cb7 Author: Alan Garny '' Date: Sat May 19 18:37:43 2012 +0200 Minor fix following some previous refactoring '(#57).' commit 9107023f379812ad892a03ee3a20c25a531c49f0 Author: Alan Garny '' Date: Sat May 19 13:39:36 2012 +0200 Some cleaning up '(#57).' commit 4a28ed83b6c1766b0bab1e581a5eecc5747f10cc Author: Alan Garny '' Date: Sat May 19 05:31:23 2012 +0200 Some cleaning up '(#57).' commit 87de54e71ffb83b87b04d4924a63cdb0447e19aa Author: Alan Garny '' Date: Sat May 19 05:22:51 2012 +0200 Some minor cleaning up and refactoring '(#57).' commit de9e6ad69736fc0ef994bb0f9243a8512f6f1c4b Author: Alan Garny '' Date: Sat May 19 04:07:29 2012 +0200 Some minor cleaning up '(#57).' commit 9666227743a870852941d217cd515c36eac69e09 Author: Alan Garny '' Date: Sat May 19 03:47:34 2012 +0200 Some cleaning up '(#57).' commit 3be90e7769d28ecfdd6c9cdc01b203ecb23a67f5 Author: Alan Garny '' Date: Sat May 19 03:38:18 2012 +0200 Some refactoring '(#57).' commit 8b298e47604d48fea4b2297d12477ccbeee2a42c Author: Alan Garny '' Date: Sat May 19 03:29:40 2012 +0200 Some cleaning up of code '(#57).' commit 699e746cc07fc510d34c738ad7bc25ff79a136db Author: Alan Garny '' Date: Sat May 19 03:23:01 2012 +0200 Some cleaning up of code '(#57).' commit 2dc1005b9838fa3765d2e2d6ad16a80e94046ded Author: Alan Garny '' Date: Sat May 19 03:06:46 2012 +0200 Some cleaning up '(#57).' commit 48883cfb1782db050573dc62cda960876f086204 Author: Alan Garny '' Date: Sat May 19 03:01:58 2012 +0200 Some refactoring '(#57).' commit fef2021b28713138f0650ff92867fe5086626b90 Author: Alan Garny '' Date: Sat May 19 01:32:08 2012 +0200 Some cleaning up '(#57).' commit f9396de628e2f0650895dc55eb51bfb4220dde6b Author: Alan Garny '' Date: Fri May 18 20:13:30 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 4e2ac2f3c5dbc3eb4c01c9d2637a909fc2055c86 Author: Alan Garny '' Date: Fri May 18 19:35:35 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 3971e9ba90f3e060037897e197f579f687bfbf3a Author: Alan Garny '' Date: Fri May 18 18:38:45 2012 +0200 More refactoring for our CellML Annotation View plugin '(#57' and '#78).' commit 77b1607fc6abec4c4bff55ab276b623cb5639222 Author: Alan Garny '' Date: Fri May 18 17:43:03 2012 +0200 More refactoring for our CellML Annotation View plugin '(#57' and '#78).' commit 66725ec960a74b307aaae774d78b5ff6d979f009 Author: Alan Garny '' Date: Fri May 18 14:22:40 2012 +0200 Improved the listing of RDF triples '(#78).' commit f1fed1adf59b65556be836d04c23ab30c085096e Author: Alan Garny '' Date: Fri May 18 00:31:13 2012 +0200 Some heavy refactoring to make it easier to further develop our CellML Annotation View plugin '(#57).' commit fe99fad5a23f5f29d8b9f523ef12df6371bf7785 Author: Alan Garny '' Date: Thu May 17 17:10:18 2012 +0200 Some minor cleaning up '(#57).' commit 2906fbab19ac320af76b1c59aecd2fdd96a62461 Author: Alan Garny '' Date: Thu May 17 15:53:23 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 145ad343f8b1895c83bf5fbee757b43db273373f Author: Alan Garny '' Date: Thu May 17 15:37:10 2012 +0200 Some minor refactoring '(#57).' commit 20a2a9e2110a96c0a2dc7ed935e5740519fd7924 Author: Alan Garny '' Date: Thu May 17 14:52:06 2012 +0200 Some minor refactoring '(#57).' commit b7ed305c377e6572a5584c1bacfe89dd779e015d Author: Alan Garny '' Date: Thu May 17 14:42:22 2012 +0200 Some minor refactoring '(#57).' commit 6c2775735f7f9e68d095062aecaded2d875a0512 Author: Alan Garny '' Date: Thu May 17 13:06:14 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit a14ae858e3d41df7d8d77cfea9213b24a108a180 Author: Alan Garny '' Date: Thu May 17 11:56:39 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 7f07f7a69d4a307c7d6e04ee04b4b95d58f88ac2 Author: Alan Garny '' Date: Thu May 17 11:47:51 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 8d6932d9859ba9701fbcd77177f17d00bd034aed Author: Alan Garny '' Date: Wed May 16 22:21:00 2012 +0200 Some heavy refactoring '(#57).' commit a08b0c2c3f744187ce40ed71158e93c3e4fc5aab Author: Alan Garny '' Date: Wed May 16 10:40:30 2012 +0200 Some refactoring '(#57).' commit c98e30a2abaec6aaa116e49a80faa92eab4b2e26 Author: Alan Garny '' Date: Wed May 16 09:42:41 2012 +0200 Some minor refactoring '(#57).' commit 42023e4ed2217cec2bdc47d8303805eaafec1242 Author: Alan Garny '' Date: Tue May 15 17:02:04 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 67fcbff58d539a56161f062b0415140a8d352d6e Author: Alan Garny '' Date: Tue May 15 15:55:33 2012 +0200 TortoiseGit getting confused... commit ff056f753a9792d6a3d654f930aa40393f7e7266 Merge: 402637de1 27ff79746 Author: Alan Garny '' Date: Tue May 15 15:54:16 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor Conflicts: src/plugins/editing/CellMLAnnotationView/src/cellmlannotationviewdetailswidget.cpp commit 402637de1e6a30c9fa2a859260f956e7624e4205 Author: Alan Garny '' Date: Tue May 15 15:18:31 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 27ff79746ac19584f8bdbc65939aa7601024f7b9 Author: Alan Garny '' Date: Tue May 15 15:18:31 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 135768c04e8798833b54aea29aeec4956a51f36b Author: Alan Garny '' Date: Tue May 15 14:57:00 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit ebb433ebba0b360f3ea4729e8cac8d6e142270f7 Author: Alan Garny '' Date: Tue May 15 14:24:46 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 8d2309da97ffa6ff337f7321aea513f9bef0123d Author: Alan Garny '' Date: Tue May 15 14:18:34 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 926c5cc41fd960bc8063ffb35ad60dd607eefdff Author: Alan Garny '' Date: Tue May 15 13:50:28 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit ccc215b898fe8732718cc382c8febfc66118d338 Author: Alan Garny '' Date: Tue May 15 13:18:15 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 4ef4cc941782ccc19ea6b7f900eed93e4d3e81ee Author: Alan Garny '' Date: Tue May 15 11:47:50 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 21b53912d04793bfce78d51821a9727bbb0e52df Author: Alan Garny '' Date: Tue May 15 11:21:17 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 6679f7e2ed9cf310df626c46b1cd5f45e3361baa Author: Alan Garny '' Date: Mon May 14 18:23:02 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 6fcbc2429e8dda31fa9201c866bb19fd6f6c76b0 Author: Alan Garny '' Date: Mon May 14 18:21:44 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 0c45df17b1b01a014a76e40dc2a26c79226470b6 Author: Alan Garny '' Date: Mon May 14 18:13:02 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit e993cc10b6ce65240c0421e751b17968f4874785 Author: Alan Garny '' Date: Mon May 14 18:03:39 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 26415366ed535e1dcde0a1cd5c445350f0dd3323 Author: Alan Garny '' Date: Mon May 14 16:56:59 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit e1e99ea522587634f3b7af9c07f3281b0ba79a58 Author: Alan Garny '' Date: Mon May 14 15:45:43 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 2c4d3005e48c7edce12663bdb3258a4616872c40 Author: Alan Garny '' Date: Mon May 14 14:30:03 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 30fcadee1ddb7d2c0a6ce1ce95b40304458c3920 Author: Alan Garny '' Date: Mon May 14 13:52:49 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 8fdff51af3677ad9defe890e51d1f41773ae70df Author: Alan Garny '' Date: Mon May 14 00:15:07 2012 +0200 Minor fix to our common.cmake file. commit e60534c5bfc027b4d51091fc0638bed0ad21e77a Author: Alan Garny '' Date: Sun May 13 23:58:56 2012 +0200 Minor fix to our common.cmake file. commit e62a4dd4c5d0722cca44669d8c7d5088a7a830dc Author: Alan Garny '' Date: Sat May 12 13:42:43 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 2bd5bb6219becb7ff6f0dd6e7ff6b8edb7df9e35 Author: Alan Garny '' Date: Fri May 11 14:44:06 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 902959549f35dc142783c7e34ffd18fc84b0d279 Author: Alan Garny '' Date: Fri May 11 14:14:25 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 22fcff63b0f547e9b26d75d5b90b9fde84168338 Author: Alan Garny '' Date: Fri May 11 13:15:14 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit f35b6b4eb99053a6eb559be449a51f55c421196c Author: Alan Garny '' Date: Fri May 11 10:52:05 2012 +0200 Disabled an annoying MSVC warning which has nothing to do with OpenCOR. commit cb8b2448e76a1d946ed340e2684f82a32a1ca1db Author: Alan Garny '' Date: Fri May 11 10:44:17 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit de37a8149719f0e58123f375fc7ee8181def0fe0 Author: Alan Garny '' Date: Thu May 10 19:20:13 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit ddebc34e76d6b0ecc706d3523fa6f80f1994419e Author: Alan Garny '' Date: Thu May 10 17:53:13 2012 +0200 Minor cleaning up '(#57).' commit dd1545c4d9c8c4811b2798336fb61b15e7454fc2 Author: Alan Garny '' Date: Thu May 10 17:51:56 2012 +0200 Some refactoring '(#57).' commit 44e10f82df4161c38d774dcbdc0d22b992cfd2a4 Author: Alan Garny '' Date: Thu May 10 17:21:57 2012 +0200 Minor cleaning up '(#57).' commit f490a142b4aede40f53d7300f4fc0cd513c38252 Author: Alan Garny '' Date: Thu May 10 16:32:09 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit d2177ad2159f3dcb848f5248c0733ca8fdc071f1 Author: Alan Garny '' Date: Thu May 10 16:14:55 2012 +0200 Minor cleaning up '(#57).' commit b1bda1695af7f5327eacbc5552b5b6c980208324 Author: Alan Garny '' Date: Thu May 10 13:58:33 2012 +0200 Minor cleaning up '(#57).' commit 88b22009b6c8c253d71e1604e192174ead01342f Author: Alan Garny '' Date: Thu May 10 11:02:47 2012 +0200 Some minor cleaning up '(#57).' commit fb5b527c88f01ed8d0772320f82cbef675ff5e91 Author: Alan Garny '' Date: Thu May 10 10:18:28 2012 +0200 Some minor cleaning up '(#57).' commit 451934b15e8c1b1ed8c0086bd47570c1d21df968 Author: Alan Garny '' Date: Thu May 10 09:18:46 2012 +0200 Minor cleaning up '(#57).' commit afe83e902efbad84d138ceb116b85b356abe1c05 Author: Alan Garny '' Date: Wed May 9 13:17:33 2012 +0200 A couple of minor fixes. commit ce6bbe0a4510791c700f020c0a36165510caa2ce Author: Alan Garny '' Date: Tue May 8 19:56:54 2012 +0200 Minor cleaning up '(#57).' commit c9078cec4aa276e637911834c8dc7e8263537891 Author: Alan Garny '' Date: Tue May 8 01:24:48 2012 +0200 Some work on retrieving annotations from a CellML file '(#73).' commit 98502ae652e3666e9006b6b4df1689b8568ad3cb Author: Alan Garny '' Date: Tue May 8 01:09:13 2012 +0200 Some work on retrieving annotations from a CellML file '(#73).' commit 371132d785fce52f5317f5f53cfa9129f22e4d0e Author: Alan Garny '' Date: Tue May 8 00:41:13 2012 +0200 Some work on retrieving annotations from a CellML file '(#73).' commit 4085893be99f8c0623365aff9710292e28f60aeb Author: Alan Garny '' Date: Mon May 7 19:05:53 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 82df73f0de05eee9dc7c19bcb9d2a5e8fc31bb60 Author: Alan Garny '' Date: Mon May 7 16:44:13 2012 +0200 Minor cleaning up '(#57).' commit 3d152a0de5ff6af09d92efc55281d8f2e6d057f4 Author: Alan Garny '' Date: Mon May 7 13:43:44 2012 +0200 Minor cleaning up '(#57).' commit acd9ed53e1d1452c35dee45aa7ed2ea8b167a555 Author: Alan Garny '' Date: Sun May 6 21:06:45 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit febcabf170101118e7d98e93ca0e0dba5cade0d0 Author: Alan Garny '' Date: Sun May 6 21:04:10 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit f7b0961b387fa46af396ff4530bb00440df5f492 Author: Alan Garny '' Date: Sun May 6 19:01:28 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 9705015b31f9521b4b4c1d0311316c742252da0b Author: Alan Garny '' Date: Sun May 6 18:40:47 2012 +0200 Removed the listing of MathML element nodes in the CellML Annotation view, since no metadata can be associated to them as such '(no' cmeta:id which can be 'set;' '#78).' commit 6e05a28ef90d94dec6e2bb7089bb6d08c8f61cde Author: Alan Garny '' Date: Sun May 6 18:30:14 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit d82fe806843e6f5e19dea3d8ecb0254917cfd6e0 Author: Alan Garny '' Date: Sun May 6 17:52:24 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Also some minor cleaning up '(#57).' commit 801383aa48b8eb61cafced0d7c2f2603bd2dfa6f Author: Alan Garny '' Date: Sun May 6 14:28:18 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 93e788c6f6c11155a172eb3cf96ff530adc932b7 Author: Alan Garny '' Date: Sun May 6 14:00:16 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit b8ef86b6ac2a5cbc916248eeaec6533a002a7200 Author: Alan Garny '' Date: Sun May 6 11:40:53 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit a03549fc057283ecf53d95880478e2962a462d47 Author: Alan Garny '' Date: Sun May 6 02:28:20 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit f38ece8abb97fee24e52206f63e07f1849b78b6b Author: Alan Garny '' Date: Sun May 6 01:30:44 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit a5b953ddd95e1d37719e6a56058f93687b1b85d8 Author: Alan Garny '' Date: Sun May 6 00:40:22 2012 +0200 Some minor cleaning up '(#57).' commit c8b635d4cc19085ef0b197384adb3c8ca7d7bc46 Author: Alan Garny '' Date: Sun May 6 00:00:29 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 19a145d8c2f5dde76436fcfe974f43281f07c23c Author: Alan Garny '' Date: Sat May 5 20:14:14 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit d80e97374bcfbb302052bc357a45e4e47226a097 Author: Alan Garny '' Date: Sat May 5 18:59:21 2012 +0200 Some minor cleaning up '(#57).' commit 400c506cca36edf6949d2a51dd01dde155c94609 Author: Alan Garny '' Date: Sat May 5 15:57:20 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 6337cf878b6f1840629bf1358bad9b7ab79704f0 Author: Alan Garny '' Date: Sat May 5 15:01:21 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 0d10718bcdba9d631cacfc3c469061081cfc51a4 Author: Alan Garny '' Date: Sat May 5 14:43:45 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 5ba829ca811a712b6d94be8666a4bec120185a8c Author: Alan Garny '' Date: Fri May 4 18:41:44 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit ce86bd1707255ef1611f78f38416257d389f96d6 Author: Alan Garny '' Date: Fri May 4 16:54:39 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 4b5968e670c4db75818cec71da9af181e9ba38c8 Author: Alan Garny '' Date: Fri May 4 16:51:16 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit eca25d5477aeb9f0ec496649afbb358640ca64ce Author: Alan Garny '' Date: Fri May 4 16:16:10 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 64f5051c79263e4a05b260a2f12ca7d59dc27419 Author: Alan Garny '' Date: Fri May 4 15:50:42 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit c3c56b6285dbf13e283500d487a120f82070d76a Merge: b0b4fe0b2 8f7177a71 Author: Alan Garny '' Date: Fri May 4 15:16:48 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit b0b4fe0b21cf06d4525b19d382c3d6ce20f8115a Author: Alan Garny '' Date: Fri May 4 13:23:32 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 8f7177a715abc07e0e7cd47918abe91559bb9381 Author: Alan Garny '' Date: Fri May 4 13:23:32 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit baa02054a1cb4c138f3709a9cd20c57b02eaba60 Author: Alan Garny '' Date: Fri May 4 11:54:39 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit 18c2205dfd04b47a9fd7b3947741a66522456c8e Author: Alan Garny '' Date: Fri May 4 11:53:13 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit 20e5ae0e69271aef18227b638a97245043b21655 Author: Alan Garny '' Date: Fri May 4 10:29:18 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit 7941831e61c6d9de0018b87c4ad74e1d8e1df00f Author: Alan Garny '' Date: Thu May 3 18:40:15 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit d83c582ed6d3d1f1f0704f74d2742ab1b172591e Author: Alan Garny '' Date: Thu May 3 17:40:17 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit 419f0787dfe7b31f1e00aabfca48b6bd20376777 Author: Alan Garny '' Date: Thu May 3 17:13:40 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' commit 53842dd4bb813fd70c416dcda393315c93737b47 Author: Alan Garny '' Date: Thu May 3 15:10:05 2012 +0200 Working on retrieving existing annotations from a CellML file '(#73).' Just some code that I am currently using to understand the way annotations work in CellML... and 'it'\''s' a 'pain!' commit 1043fc1a9781c1d671bee5a56d043261f903142c Author: Alan Garny '' Date: Wed May 2 17:33:43 2012 +0200 Some refactoring of CellML-related code which used to leak '(see' 'https://tracker.physiomeproject.org/show_bug.cgi?id=3291).' commit feb646cfb8a05a86a8b57193d0439148950785fe Author: Alan Garny '' Date: Wed May 2 11:37:56 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 3c1d63d8d5f56c5886258d48b1321ccdaee859da Author: Alan Garny '' Date: Tue May 1 11:27:09 2012 +0200 Some minor cleaning up '(#57).' commit d7b0570d1a184e580d810b513e3a007374f4a6a0 Author: Alan Garny '' Date: Fri Apr 27 18:38:37 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Note: the metadata tree view 'doesn'\''t' its height initialised properly... 'Why?!' Well, because 'it'\''s' the end of the 'week!' ':)' '(see' line 93 of 'cellmlannotationviewplugin.cpp)' commit 25a781f0232ca13a8c157766f5ee26f62b60f030 Author: Alan Garny '' Date: Fri Apr 27 17:55:35 2012 +0200 Minor improvement '(#72).' commit 2aec6f8c0fa39b6553c079e59517b2d18a7ba00c Author: Alan Garny '' Date: Fri Apr 27 17:23:10 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Note: the metadata tree view 'doesn'\''t' its height initialised properly... 'Why?!' commit b3796fbe1c1d2fe84404e0ba2497ef9199d3a606 Author: Alan Garny '' Date: Fri Apr 27 17:00:47 2012 +0200 Updated the user and developer documentations to reflect the release of Ubuntu 12.04 LTS. commit 012821a847526e7469095210ee4d9601ba26efcf Author: Alan Garny '' Date: Fri Apr 27 14:37:51 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 1156d3baaad707d0f89f88837c12db18e36c9986 Author: Alan Garny '' Date: Fri Apr 27 11:50:15 2012 +0200 Minor cleaning up '(#57).' commit 471ab8fde692378e15ebf9f3a473001ef8db24d2 Author: Alan Garny '' Date: Fri Apr 27 11:16:13 2012 +0200 Minor refactoring '(#57).' commit 8614257c5031ad8e68b31d670ea4e2af37e88528 Author: Alan Garny '' Date: Fri Apr 27 10:32:17 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit e4355a21f9abc861000e9d79e493b780e5bbf3a7 Author: Alan Garny '' Date: Thu Apr 26 18:24:38 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit efc4db505b1a9dde04f780990e436114bde9d1ea Author: Alan Garny '' Date: Thu Apr 26 18:12:45 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 3bd3a66b7c25e058af6b3a8977530cf510d387c8 Author: Alan Garny '' Date: Thu Apr 26 16:48:04 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit e7f892fdd13891e8530e00297949542bbf432fa1 Author: Alan Garny '' Date: Thu Apr 26 16:07:44 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 34ba7210e5eaf33d0e9ee91de6e130f17222cd39 Author: Alan Garny '' Date: Thu Apr 26 15:40:29 2012 +0200 Some minor cleaning up '(#57).' commit e4483b579e0c9fda1a3e0a8e7bc7ad9bb8da1d9d Author: Alan Garny '' Date: Thu Apr 26 15:01:32 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' commit 97c65f618289f99fb4c6d5fc676defae7be0af02 Author: Alan Garny '' Date: Thu Apr 26 14:08:53 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Also some minor cleaning up '(#57).' commit f2aa6bc8cb14cd419e59ca54badaeb5802c1c13e Author: Alan Garny '' Date: Wed Apr 25 17:47:22 2012 +0200 Some work on the CellML Annotation view for a CellML file '(#78).' Some minor cleaning up '(#57).' commit 47531531824430790c219fb0b1fad5fee176d7ce Author: Alan Garny '' Date: Wed Apr 25 16:22:11 2012 +0200 Working on the CellML Annotation view for a CellML file '(#78).' Also fixed a few memory leaks '(oops!).' commit f34a320ed12c2641f08e5248eb02b5df7e9ecebe Author: Alan Garny '' Date: Wed Apr 25 15:03:06 2012 +0200 Working on retrieving the components '(#72).' Not quite sure what can be done with MathML elements... commit 7d9c1e7343e5ecd0e17fa4cf4e4c67b9ebd5ca4a Author: Alan Garny '' Date: Tue Apr 24 18:32:44 2012 +0200 Working on retrieving the components '(#72).' commit 243c4d11e843cad8d4ba0aecbe0995f707d5b8e0 Author: Alan Garny '' Date: Tue Apr 24 17:52:58 2012 +0200 Working on retrieving the components '(#72).' commit 223ce3d394b950495a42c0e448d40fd5dec29c2d Author: Alan Garny '' Date: Tue Apr 24 17:06:50 2012 +0200 Working on retrieving the components '(#72).' commit 48e222e7781c39770c7bc608d1275ba9c480bdc2 Author: Alan Garny '' Date: Tue Apr 24 16:06:54 2012 +0200 Working on retrieving the components '(#72).' commit 0fb96afbe6a73c621a7972216aafb650926e620c Author: Alan Garny '' Date: Tue Apr 24 15:34:41 2012 +0200 Working on retrieving the components '(#72).' commit b09c9c5f05aae0f8016b0ec48b79c24bbc5bd421 Author: Alan Garny '' Date: Tue Apr 24 15:32:05 2012 +0200 Working on retrieving the components '(#72).' commit a0fbf98e7768ab98079fb976195f520be096b55e Author: Alan Garny '' Date: Tue Apr 24 15:04:52 2012 +0200 Done with retrieving connections '(#72).' commit 31fafdb4a6c4fb823826d6117b8f6a83631c86eb Author: Alan Garny '' Date: Tue Apr 24 14:47:10 2012 +0200 Some more work on retrieving connections '(#72).' commit 820a51fc4e9ab0bd51c3a100df8268f0af0d5951 Author: Alan Garny '' Date: Tue Apr 24 14:21:05 2012 +0200 Working on retrieving connection information '(#72).' commit 602ee49cef6fc9a408d73d3e9b3fc5326c5bd9f0 Author: Alan Garny '' Date: Mon Apr 23 17:25:36 2012 +0200 Done with retrieving groups '(#72).' commit dd914c80ab7a60301862cf550d50a61ced2efc20 Author: Alan Garny '' Date: Mon Apr 23 16:41:10 2012 +0200 Some more work on retrieving groups '(#72).' commit c3bf3c9366e14cbf22a3b33719a8b8e8ada97be5 Author: Alan Garny '' Date: Mon Apr 23 14:52:16 2012 +0200 Some more work on retrieving groups '(#72).' commit 2ef026086bf06c57b3e4b212ed6b1b8fb65c7cc0 Author: Alan Garny '' Date: Mon Apr 23 11:39:35 2012 +0200 Some more work on retrieving units '(#72).' commit ecbc960dea179d5bf834a9b8c463fd96a18d401f Author: Alan Garny '' Date: Fri Apr 20 19:31:12 2012 +0200 Some refactoring and cleaning up '(#57' and '#72).' commit 00c6e8fe16be8fd69c72d8c6e4d0d8b5027ae259 Author: Alan Garny '' Date: Fri Apr 20 17:55:26 2012 +0200 Some more work on retrieving units '(#72).' commit 08ed5785c8e05c44eb56094b0fec7765c3153417 Author: Alan Garny '' Date: Fri Apr 20 16:22:12 2012 +0200 Working towards retrieving units information '(#72).' commit b59fd2a6d4227f5e75b12e8a6158e2c95340607b Author: Alan Garny '' Date: Thu Apr 19 17:43:22 2012 +0200 Minor refactoring '(#57).' commit 75e889474bd79e1cd56302b38dbe0f8bfd77e9a7 Author: Alan Garny '' Date: Thu Apr 19 16:13:25 2012 +0200 More work on retrieving imports '(#72).' commit e14173b4933c99efeec03bad48579941bd896030 Author: Alan Garny '' Date: Thu Apr 19 15:18:46 2012 +0200 Some work on retrieving imports from a CellML file '(#72).' commit 58a3816d5cd59825bef3c63e34f1901c7e61067d Author: Alan Garny '' Date: Thu Apr 19 14:58:03 2012 +0200 Resuming our work issue '#72.' commit eec5c697cb919b8fec176ce339aa671dc4c5f03c Author: Alan Garny '' Date: Thu Apr 19 11:52:13 2012 +0200 Minor cleaning up of the SingleCellSimulation plugin '(#57).' commit 0f4421af62c3bb0c64c42657f73e227c33414546 Author: Alan Garny '' Date: Wed Apr 18 15:44:37 2012 +0200 Fixed an issue regarding the retrieving of an indirect parameter assembly code index in the Computer plugin. commit 6936794405ff119e9dbd1b3b04e5338649245f4a Author: Alan Garny '' Date: Tue Apr 17 16:24:01 2012 +0200 Oops, forgot to undo 'something!' commit fb091fdd2d76adc2e82273cd25e2f3efd4d7bcae Author: Alan Garny '' Date: Tue Apr 17 15:40:11 2012 +0200 Added another over-constrained test CellML file. commit 60db292053ee719dd9ff8922d52c280e4607eab8 Author: Alan Garny '' Date: Tue Apr 17 15:02:35 2012 +0200 Addressed the height issue of the graph panels in the SingleCellSimulation plugin. Closes '#89.' commit 4f468d0536cdce25a8fe3d757b866c51843cc3ed Author: Alan Garny '' Date: Tue Apr 17 11:48:15 2012 +0200 Added a MSVC debug version of the LLVM and CellML API '(#87).' commit ea51d8b6c39f16e73edfcfc3fa72fd65f9d13999 Author: Alan Garny '' Date: Tue Apr 17 09:47:43 2012 +0200 Moved some CellML-related files. commit 33f7e38b042345bc7f71163638b8a33f8a743b8d Merge: 11ef597ef 16f8b61da Author: Alan Garny '' Date: Mon Apr 16 10:17:01 2012 -0700 Merge pull request '#88' from opencor/msvcPort Closes '#87.' commit 16f8b61daaa25e70bcdeab73744c56c1fda35818 Author: Alan Garny '' Date: Mon Apr 16 19:07:43 2012 +0200 Done with getting everything '(incl.' 'tests)' working again on Mac OS X '(#87).' commit eb6ea874eeb195211b395f687a6da0bff508f7f7 Author: Alan Garny '' Date: Mon Apr 16 18:13:54 2012 +0200 Some more work on getting the Mac OS X version to build fine '(#87).' commit 4e173222f16a345283585cd333ed46b4cc7ea722 Author: Alan Garny '' Date: Mon Apr 16 17:57:46 2012 +0200 Some more Qt dependencies '(as' a result of upgrading to Qt '4.8?)' for our Mac OS X build. commit 0b754c4aca17e7bc5ac6df0f574cd3ab4bc9389a Author: Alan Garny '' Date: Sat Apr 14 23:57:15 2012 +0200 Fixed something for Windows which got introduced when trying to get things to work on Linux again '(#87).' commit 61a692666f9b2dcb381c9fc29ddfd134233e83f5 Merge: 291efa311 22a8b03b3 Author: Alan Garny '' Date: Sat Apr 14 21:20:00 2012 +0200 Merge branch ''\''msvcPort'\''' of github.com:opencor/opencor into msvcPort commit 291efa311534332085138cd4a706a96ac1d86831 Author: Alan Garny '' Date: Sat Apr 14 21:19:33 2012 +0200 Got everything '(incl.' 'tests)' to work again on Linux '(#87).' commit 22a8b03b30e9688133a386b0e984c92ef3fd87b7 Author: Alan Garny '' Date: Sat Apr 14 18:43:04 2012 +0200 Minor cleaning up '(#57).' commit 4f45398f7922a009c2f27843341befd227ecc38c Author: Alan Garny '' Date: Sat Apr 14 14:45:28 2012 +0200 Fixed a couple of issues which got introduced as part of move to MSVC '(#87).' Can now run tests on Windows. commit 15dd9ddb110d27100801384a2b2628bf96db4150 Author: Alan Garny '' Date: Sat Apr 14 12:57:37 2012 +0200 Addressing the testing of plugins '(#87).' commit 71425f72064092efe03b07682faeee480ea9625b Author: Alan Garny '' Date: Sat Apr 14 00:31:24 2012 +0200 Minor update to the 'developer'\''s' documentation. commit d3e1155cc3b66356297d99de9447b4be2d454964 Author: Alan Garny '' Date: Fri Apr 13 23:58:14 2012 +0200 Some more minor cleaning up '(#57).' commit 39bc3aee095f25585b471e80a70e144859c51b5c Author: Alan Garny '' Date: Fri Apr 13 23:55:39 2012 +0200 Minor cleaning up '(#57).' commit 2b415906bed20ac434316946a47981e214a0798d Author: Alan Garny '' Date: Fri Apr 13 19:01:25 2012 +0200 Can now run a CellML file using a MSVC version of OpenCOR '(#87).' Now, need to do quite a bit of tidying 'up!' commit c14e96085a868d48c7ba829929a91c6b54155601 Author: Alan Garny '' Date: Fri Apr 13 13:50:34 2012 +0200 Minor improvement to our MSVC solution '(#87).' commit 94d352bb61f7d8e9f5e856acca57d35a5fb3a3bf Author: Alan Garny '' Date: Fri Apr 13 11:11:25 2012 +0200 Minor cleaning up '(#57).' commit dd354a79f1f2dd26fb2c6f278b3cb963c7656db6 Author: Alan Garny '' Date: Thu Apr 12 18:52:14 2012 +0200 Yet some more work on supporting MSVC '(#87).' commit bf19a36a69e8b5810f4cd821b15d248f9466d9c9 Author: Alan Garny '' Date: Thu Apr 12 18:37:01 2012 +0200 Some more work on supporting MSVC '(#87).' commit b826fc09561bbc05544e86e1a6eb0f4586e7ce7c Author: Alan Garny '' Date: Thu Apr 12 18:17:55 2012 +0200 Minor cleaning up '(#57).' commit 7bc05f0157aa67baeb7d71d096aef1a17abf8bdb Author: Alan Garny '' Date: Thu Apr 12 18:06:09 2012 +0200 Some minor cleaning up '(#57).' commit 471fcad3c1df89d734acbbdb5a0dbd9f3b6c8b48 Author: Alan Garny '' Date: Thu Apr 12 17:51:43 2012 +0200 Some more work on supporting '(VERY' 'annoying)' MSVC '(#87).' commit b6bc7faf1e5766ca796198ff8822599cc5c6a2bc Author: Alan Garny '' Date: Thu Apr 12 17:36:54 2012 +0200 Minor cleaning up '(#57).' commit 566feff072e1d08dfba51c9b3dd574434462288e Author: Alan Garny '' Date: Thu Apr 12 16:44:46 2012 +0200 Some more work towards supporting MSVC '(#87).' commit 37126adb68793cdeb659a2ee517b0020a125cd46 Author: Alan Garny '' Date: Thu Apr 12 16:34:18 2012 +0200 Minor cleaning up '(#57).' commit cc32db2f302305ce64e56942f1a53a16f92ec431 Author: Alan Garny '' Date: Wed Apr 11 20:41:39 2012 +0200 Minor fix to our LLVM 'plugin'\''s' CMake files. commit aed9d6b6c7d8fb8bcaf26b2949e4ceea663f334d Author: Alan Garny '' Date: Wed Apr 11 20:21:24 2012 +0200 Minor improvement to our LLVM 'plugin'\''s' CMake files. commit a4378d375da14e2ef5f1358f79a881083b95007b Author: Alan Garny '' Date: Wed Apr 11 18:53:36 2012 +0200 Some minor cleaning up '(#57).' commit 3b2f023513482a1e4ea78390613ad4cf0c626aa0 Author: Alan Garny '' Date: Wed Apr 11 18:39:49 2012 +0200 Minor cleaning up '(#57).' commit 7b6815c5d4b5ad7bcbf3f223a2f3c31ee0573579 Author: Alan Garny '' Date: Wed Apr 11 18:32:17 2012 +0200 Added binaries for the LLVM plugin, as well as fixed an issue with its CMakeLists.txt.use file '(#87).' Also some minor cleaning up '(#57).' commit cdc29bcc2b837950012ad410f2ccfc8f16a70d87 Author: Alan Garny '' Date: Wed Apr 11 17:55:26 2012 +0200 Some more work towards supporting MSVC on Windows '(#87).' commit 59dfb6b551b9a21410c74d8264952a6497a2879d Author: Alan Garny '' Date: Wed Apr 11 16:49:14 2012 +0200 Some minor cleaning up '(#57).' commit a5f568489d7e5fa421f3d6a8b5cc8d05c353ebb7 Author: Alan Garny '' Date: Wed Apr 11 15:14:57 2012 +0200 Updated the 'developer'\''s' documentation after the release of version 1.2.1 of the Qt SDK. commit f05a836a57505fb7f46d372bfe46d364ba49a06f Author: Alan Garny '' Date: Wed Apr 11 13:37:12 2012 +0200 Minor improvements to the CellMLSupport and SingleCellSimulation plugins '(#57).' commit bfa2327d4cae4b20683a33ff1df395056d405dbf Author: Alan Garny '' Date: Wed Apr 11 13:05:53 2012 +0200 Yet another minor improvement to our Computer plugin '(#57).' commit 5e21e3ed863f05f2f0634dea0d17af3fc3f04fa5 Author: Alan Garny '' Date: Wed Apr 11 13:03:37 2012 +0200 Minor improvement to our Computer plugin '(#57).' commit 15182cb7b60e68768dbb287a6c68216c68025fb1 Author: Alan Garny '' Date: Wed Apr 11 11:22:32 2012 +0200 Updated the CellML API to version 1.11 RC1 on Windows x86. commit 0e7f2d75ba2915d8106c0bc5290782a61ef23d56 Merge: 5cda756b0 4aced0233 Author: Alan Garny '' Date: Wed Apr 11 11:06:18 2012 +0200 Merge branch ''\''msvcPort'\''' of github.com:opencor/opencor into msvcPort commit 4aced02334f0ca99654aba432826e6170e5e9763 Author: Alan Garny '' Date: Wed Apr 11 00:37:38 2012 +0200 Some minor cleaning up '(#57).' More work on building LLVM with MSVC '(#87).' Note: there is still one unresolved function in the Computer plugin test. commit 359eb213b73dc0dea780d1a42bbf1ba208b31bc8 Author: Alan Garny '' Date: Tue Apr 10 22:27:55 2012 +0200 Addressed a small with MSVC which would just hang up while trying to build an optimised version of LLVM '(#87).' commit 5cda756b0df0d12a507abf7aba8bb8f6efb54e6b Author: Alan Garny '' Date: Tue Apr 10 18:50:08 2012 +0200 Fixed a typo issue '(#87).' commit 519e0554c754791fa5cd62588422a560e61b4159 Author: Alan Garny '' Date: Tue Apr 10 18:45:38 2012 +0200 Can now build the LLVM plugin, but 'it'\''s' probably full of things that we 'don'\''t' need, so we will have to check what we can get rid of, if anything '(since' the current version of the plugin is quite 'big).' Also, we 'don'\''t' currently export any class/function, so again this will have to be done. Otherwise, I really wish it was possible to directly build a shared library version of LLVM using MSVC. I mean, I had to generate some X86-related .inc files for each platform we want to support and those are 'big!' Some of them are identical from one platform to another '(especially' on Linux 32-bit and Linux 64-bit where the files are all 'identical),' so we might want to optimise that a bit. commit fbdf0410c7560b3f7e361eeff9454b04243556e6 Author: Alan Garny '' Date: Tue Apr 10 15:12:28 2012 +0200 Starting to get a meaningful LLVM shared library '(#87).' commit f2305d11f9f03fea14add3cf42bb6a529e70ec9d Author: Alan Garny '' Date: Tue Apr 10 13:30:19 2012 +0200 Some more work towards building LLVM with MSVC '(#87).' commit 2151c048e78b505a18d0dff3e70f8e97c690cba1 Author: Alan Garny '' Date: Tue Apr 10 13:16:05 2012 +0200 Some more work on supporting the compilation of LLVM using MSVC '(#87).' commit f46c3110e381b5a0921781285ad0fc640a13e3a9 Author: Alan Garny '' Date: Tue Apr 10 10:05:50 2012 +0200 Some more work on supporting the build of LLVM using MSVC '(#87).' commit 1000bd4738707eca2fdfdeae45b0da6f52c3124f Author: Alan Garny '' Date: Tue Apr 10 09:59:32 2012 +0200 Updated 'LLVM'\''s' config files and README file '(#87).' commit 7b3a0057d948504275b484d77d8794212d5e1cb7 Author: Alan Garny '' Date: Sun Apr 8 20:18:01 2012 +0200 Removed an unnecessary file '(#87).' commit 9b01abf4cf89d7b2b048e20fd8632176738df29a Author: Alan Garny '' Date: Sun Apr 8 19:42:26 2012 +0200 Some more work on supporting the compiling of LLVM using MSVC '(#87).' commit b4b5b9ecbbd91e3ad802e642dcaedb52a9f07d62 Author: Alan Garny '' Date: Sat Apr 7 23:32:59 2012 +0200 Minor update to our developer documentation '(#87).' commit ac2d0f3d0231fac54133964c318e354e0ba19a32 Author: Alan Garny '' Date: Sat Apr 7 20:56:38 2012 +0200 Working on building whatever we need from LLVM using MSVC '(#87).' Indeed, unlike with MinGW, 'it'\''s' not currently possible '(!!)' to build a shared library version of LLVM, so... commit f858b9e6c8c9f6a79f66efa1ed5729a018b8958b Author: Alan Garny '' Date: Sat Apr 7 19:55:46 2012 +0200 Minor editing '(#87).' commit 5d810a60df2327b811666d1cb6f6b5e20e697483 Author: Alan Garny '' Date: Sat Apr 7 19:31:34 2012 +0200 Some more support for MSVC on Windows '(#87).' commit f6c912ffba952e1e172fe31ea082ea7d8c999603 Author: Alan Garny '' Date: Sat Apr 7 19:28:31 2012 +0200 Some work on building OpenCOR using MSVC on Windows '(#87).' commit c8b30c6370499c98495afb1098b613fa5427dcf3 Author: Alan Garny '' Date: Sat Apr 7 02:41:51 2012 +0200 Updated the CellML API binaries on Windows to use the MSVC2010 ones instead '(#87).' commit dc95f33d871bb2af52960b42cf9b6cabb6fbc3d8 Author: Alan Garny '' Date: Sat Apr 7 02:31:07 2012 +0200 Minor update to the LLVM readme file. commit dd4af3850ec14f88ecb137846f5b8d0f8c42b5fb Author: Alan Garny '' Date: Sat Apr 7 01:15:55 2012 +0200 Can now build and deploy the CellMLModelRepository plugin using MSVC on Windows '(#87).' commit 5956e64ec5cf88d226dbf8e7b75dd0c3aafb0a4d Author: Alan Garny '' Date: Sat Apr 7 01:10:29 2012 +0200 Got the plugins to become selectable. It was related to an issue we were trying to address as a result of using MSVC '(#87).' commit ef089fe521a689c965c24aa77e0068a306601a42 Author: Alan Garny '' Date: Sat Apr 7 00:03:54 2012 +0200 Improved support for MSVC '(#87)' as well as warnings generation. commit dff193a1322306833b302edea69cdb9086072e8f Author: Alan Garny '' Date: Fri Apr 6 19:52:00 2012 +0200 Can now build and deploy yet some more plugins with MSVC '(#87).' Mind you, none of the plugins are now selectable '(including' on Linux and Mac OS 'X)!' Hmm... commit b4feaec8e401ab67e166df49f9547ff413425b5d Author: Alan Garny '' Date: Fri Apr 6 19:43:24 2012 +0200 Can now build and deploy a few more plugins with MSVC '(#87).' commit e1ae8f3edf7336a6f704e19ddb8e916a8e4d2f78 Author: Alan Garny '' Date: Fri Apr 6 19:36:57 2012 +0200 Fixed our main CMake files which should allow us to build once again on Linux and Mac OS X '(#87).' commit 0dca004059176a91ecee67dcda64c71f8a1adecf Author: Alan Garny '' Date: Fri Apr 6 18:17:34 2012 +0200 Can now build and deploy the Core plugin using MSVC on Windows '(#87).' Also fixed a minor issue as a result of using MSVC '(#57).' commit 0005bfc537a3f5e5c1888a71730b7b5c53ad549c Author: Alan Garny '' Date: Fri Apr 6 15:34:31 2012 +0200 Minor improvement with regards to Windows deployment '(#87).' commit af82de4ec44ad96d68c2b7139e0c0cc82245fd98 Author: Alan Garny '' Date: Fri Apr 6 15:19:40 2012 +0200 Some more work on building OpenCOR with MSVC on Windows '(#87).' commit 24435884ecf1515cc82a0aa440187e7c9a61c48b Author: Alan Garny '' Date: Fri Apr 6 13:41:15 2012 +0200 Some more work towards building OpenCOR with MSVC on Windows '(#87).' commit a50af0fc07e8fc7e3ba5690ecf8509b51a1dbcf3 Author: Alan Garny '' Date: Fri Apr 6 13:35:12 2012 +0200 Minor cleaning up '(#57).' commit 74dcabb459955d02119e74a664462673940fa263 Merge: 02c1d4183 2bf67926a Author: Alan Garny '' Date: Fri Apr 6 13:33:59 2012 +0200 Merge branch ''\''msvcPort'\''' of github.com:opencor/opencor into msvcPort commit 02c1d418308c6e757a0c97442950de46e117cfb9 Author: Alan Garny '' Date: Fri Apr 6 13:31:35 2012 +0200 Can now build and deploy 'OpenCOR'\''s' shell '(i.e.' OpenCOR without any of its 'plugins).' There is still a lot of work to be done, but progress is at least being made... '(#87)' commit 2bf67926a8535b1c4691e218bb33bf680c576702 Author: Alan Garny '' Date: Fri Apr 6 13:31:35 2012 +0200 Can now build and deploy 'OpenCOR'\''s' shell '(i.e.' OpenCOR without any of its 'plugins).' There is still a lot of work to be done, but progress is at least being made... commit 69a200d0f98563de1c8502e1d96d7467cb674f87 Author: Alan Garny '' Date: Fri Apr 6 11:21:43 2012 +0200 Support deployment using MSVC on Windows. commit bde2783054d48a43a12f2c344de1b03e67f20594 Author: Alan Garny '' Date: Fri Apr 6 00:28:15 2012 +0200 Minor updates to the developer documentation. commit b93e897aa534576c148568900c32e9dbb5260823 Author: Alan Garny '' Date: Thu Apr 5 23:28:23 2012 +0200 Minor update to the developer documentation. commit 16fc4c3ba0349874881820f7505dae5035b31a7a Author: Alan Garny '' Date: Thu Apr 5 21:46:34 2012 +0200 Minor improvement to the developer documentation. commit 20846ed38d4a940de6923fa4b10994f6da63381d Author: Alan Garny '' Date: Thu Apr 5 21:41:14 2012 +0200 Some work on trying to support MSVC on Windows. Indeed, the CellML API is built using the latest version of MinGW which is causing problems with OpenCOR on Windows which is built using an older version of MinGW '(the' one shipped with Qt 'though).' So, 'let'\''s' see whether we can get OpenCOR to build using MSVC 2010. This would make it easier for the CellML API guys to support Windows... commit 11ef597ef6afa4162d9f02d12b50234560f3e6e0 Author: Alan Garny '' Date: Thu Apr 5 20:38:02 2012 +0200 Minor MSVC-related improvement. commit 1e13010939c4951e0d3d0395e3918cb30117fc09 Author: Alan Garny '' Date: Thu Apr 5 15:21:29 2012 +0200 Minor update to the developer documentation. commit 14bebc15b04fb34310acd25b14761cd01a472c70 Author: Alan Garny '' Date: Thu Apr 5 00:57:21 2012 +0200 Minor update to the developer documentation. commit 4a5c1b96acf845817b548d472ec6d0419401848d Author: Alan Garny '' Date: Wed Apr 4 14:22:48 2012 +0200 SingleCellSimulationView plugin: now, keep track of the size of each graph panel, and of the output. Closes '#86.' commit 6bf15ab03dd31966627dc0b809dccdf70593a447 Author: Alan Garny '' Date: Wed Apr 4 13:49:08 2012 +0200 Minor cleaning up '(#57).' commit a9394e250078a59de5b7f8c2faaca3cfa6de125a Author: Alan Garny '' Date: Wed Apr 4 13:11:30 2012 +0200 Some minor refactoring '(#57).' commit f149d83e7d7b97d541ddafb99c6d7542f5452b39 Author: Alan Garny '' Date: Wed Apr 4 13:08:37 2012 +0200 Improved ''\''support'\''' for the Cortessa et al. 2006 model. commit 0882b6c1cb34d9ba019195e8f198101fd1c54b9b Merge: 4f9c14f2e 3f0751e5e Author: Alan Garny '' Date: Wed Apr 4 11:06:09 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 3f0751e5ecc751ff67e1be671ac563c82ff0ef94 Author: Alan Garny '' Date: Wed Apr 4 09:29:53 2012 +0200 Fixed a couple of 'ObjRef' related issues '(as' per instruction given at 'https://tracker.physiomeproject.org/show_bug.cgi?id=3246).' commit 60688a46d370fec50620ba26e05dfbe275837237 Author: Alan Garny '' Date: Tue Apr 3 19:24:17 2012 +0200 Cleaned up some code and fixed a couple of memory leaks. commit 8f2a678e72c5742f8ccde87055315048fc5bd4c1 Author: Alan Garny '' Date: Tue Apr 3 18:23:51 2012 +0200 Added ''\''support'\''' for the Cortessa et al. 2006 model in our SingleCellSimulationView plugin. commit 875004c3b838b096c2cd3c7f09050a563d39465f Author: Alan Garny '' Date: Tue Apr 3 18:23:04 2012 +0200 Some minor cleaning up and minor fix to our CellML File Manager. commit 07be681e1d529184fd97857b111513b52e498c65 Author: Alan Garny '' Date: Tue Apr 3 11:13:17 2012 +0200 Minor cleaning up '(#57),' as well as added support for double precision to the remainder and quotient functions '(closes' '#84' and closes '#85).' commit 4f9c14f2e3b58485ff8ad8b1f4165826687cf651 Merge: d5f5e5ac1 12074d2c3 Author: Alan Garny '' Date: Tue Apr 3 07:53:42 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 12074d2c341a0188637c17c7b61fbc501156b5fd Author: Alan Garny '' Date: Mon Apr 2 19:12:26 2012 +0200 Some more work on retrieving information from a CellML file '(#72).' commit 898c5f2a8c36731a71ca562f36b4e8319a295903 Author: Alan Garny '' Date: Mon Apr 2 18:23:42 2012 +0200 Some work on retrieving information from a CellML file '(#72).' commit 7d77f61e57ef1e3f4c3e4f7189165900e0b9a172 Author: Alan Garny '' Date: Mon Apr 2 13:10:28 2012 +0200 Minor refactoring '(#57).' commit 28a267a3fb76b162d80d05659d4e73fa420c5cae Merge: 40f6b056a f25eb27c6 Author: Alan Garny '' Date: Mon Apr 2 10:01:19 2012 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d5f5e5ac1347dc1e2e83c29d3b35d16818d3b4ba Author: Alan Garny '' Date: Sat Mar 31 18:53:49 2012 +0200 Some minor cleaning up '(#57).' commit f25eb27c63d2115e8c08d816b72a96fefc148674 Author: Alan Garny '' Date: Sat Mar 31 12:03:24 2012 +0200 Some work on our CellMLAnnotationView plugin '(#78).' commit b65bbffcd6a97e3f30adfb73b273ac874777e2f3 Author: Alan Garny '' Date: Fri Mar 30 22:49:23 2012 +0200 Improved the speed of our Viewer plugin '(and' improved QtMmlDocument, a third-party class we use, in the 'process).' Closes '#83.' commit 40f6b056ad6bf5247d990bc2a9e12c8e52ba9b1e Author: Alan Garny '' Date: Fri Mar 30 16:02:32 2012 +0200 Minor cleaning up '(#57).' commit 1f238068b4c29239707950fb13a9093aff2ed1ce Author: Alan Garny '' Date: Fri Mar 30 15:21:26 2012 +0200 Some additional cleaning up '(#57).' commit fe6b7eb379e83d38108dd8808542b198b1f80de7 Author: Alan Garny '' Date: Fri Mar 30 15:15:34 2012 +0200 Working on some cleaning up '(#57).' commit f761ef6a8961963ae9f3e7f81df65b6761d664e8 Author: Alan Garny '' Date: Fri Mar 30 14:23:18 2012 +0200 Minor cleaning up of our Viewer plugin '(#57).' commit 74d267fe1b23307e09ef09392ade4cb36cddb0cd Author: Alan Garny '' Date: Fri Mar 30 14:19:52 2012 +0200 Some work on our CellMLAnnotationView plugin '(#78).' commit bee05110483b68502d8a227eca44332a98868aad Author: Alan Garny '' Date: Fri Mar 30 14:19:13 2012 +0200 Some minor cleaning up '(#57).' commit 6efbdd993566b98a278017866ffe7e5d844e71c2 Author: Alan Garny '' Date: Fri Mar 30 11:08:18 2012 +0200 Minor improvement in a casting '(#57).' commit abb95aa995e1205de729d3232acfa3e4fd8b23cd Author: Alan Garny '' Date: Fri Mar 30 11:00:42 2012 +0200 Some refactoring of our FileBrowser plugin. commit 5ba5b1d8239e378d98cd3574cb9b3ea72dd16909 Author: Alan Garny '' Date: Fri Mar 30 10:47:00 2012 +0200 Some refactoring of our FileOrganiser plugin. commit 89559d1c9176b70c1e1e813ab05cc4a762838952 Author: Alan Garny '' Date: Thu Mar 29 18:38:10 2012 +0200 Some more refactoring '(#57).' Also some GUI improvement to our CellMLAnntationView plugin '(#78).' commit 461d7eb5f48b4e9857407269784f60a332677665 Author: Alan Garny '' Date: Thu Mar 29 18:07:13 2012 +0200 And yet some more refactoring... '(#57)' commit 01b8db317c15362ee7ffe9bd40d4ced32ed591a0 Author: Alan Garny '' Date: Thu Mar 29 18:01:37 2012 +0200 On a roll '(with' 'refactorisation)' '(#57).' commit 66f13579729fb7241ab90e8584c2feb17bd86615 Author: Alan Garny '' Date: Thu Mar 29 17:54:57 2012 +0200 In refactory mode, so some more... '(#57)' commit fa3887504ee248199227caadaf9ca285a57aa15b Author: Alan Garny '' Date: Thu Mar 29 17:29:18 2012 +0200 Some refactoring '(#57).' commit 7c2f779c47db259f559d5c25e28c831013f464b9 Author: Alan Garny '' Date: Thu Mar 29 17:05:14 2012 +0200 Some more GUI improvement to our RawCellMLView plugin '(#16).' commit 639f3568b5bd9ab8affd46c66c9d2efddbf428f9 Author: Alan Garny '' Date: Thu Mar 29 16:14:48 2012 +0200 Slight GUI improvement to our RawCellMLView plugin '(#16).' commit 2d6245e2f6e5a1ffd20faf5819a2c3568b6def98 Author: Alan Garny '' Date: Thu Mar 29 15:50:37 2012 +0200 Some refactoring and cleaning up of our CommonWidget class '(#57).' commit be8666b3357feac1ae20c39c4eb78359a06be2c7 Author: Alan Garny '' Date: Thu Mar 29 14:35:58 2012 +0200 Improved on our CommonWidget solution to issue '#82.' commit 5d12d3418ae82813d7fc5cedde16f21d5c4deca1 Author: Alan Garny '' Date: Thu Mar 29 11:56:25 2012 +0200 Working on making sure that CommonWidget uses the right colour to draw its border when docked '(#82).' commit 9aeaf3ab2032bc3b663e94452007534577599056 Author: Alan Garny '' Date: Thu Mar 29 00:38:08 2012 +0200 'Shouldn'\''t' work late at 'night!' In other words, reverting the previous commit... commit 280b7230fc6385d06d6b9987e18186580c1a4bbc Author: Alan Garny '' Date: Thu Mar 29 00:25:18 2012 +0200 Some minor refactoring '(#57).' commit 939d0fbab93155654a6fa0b83caca7ca1d0cd715 Author: Alan Garny '' Date: Wed Mar 28 17:51:02 2012 +0200 Minor comment. commit 1c20726eb3cb54a14d8342497409e78c67905f1f Author: Alan Garny '' Date: Wed Mar 28 17:14:36 2012 +0200 Minor improvement to our SingleCellSimulation view plugin. commit 39f98c63fb709dd382b31d19b31577a67ce4f934 Author: Alan Garny '' Date: Wed Mar 28 16:58:03 2012 +0200 Improved the rendering of a line in some places. commit 2c2a126365c2c553335752516cb15ce87336adc6 Author: Alan Garny '' Date: Wed Mar 28 15:46:34 2012 +0200 Minor cleaning up '(#57).' commit aec4bcf3fcb3d0b0b47d87fc99d77dc6a53081e2 Author: Alan Garny '' Date: Wed Mar 28 14:18:46 2012 +0200 Made sure that whatever relies on the 'system'\''s' palette gets updated whenever the system palette gets changed. commit bf2c8c5958741f4875e6dd02105f6e474299806b Author: Alan Garny '' Date: Wed Mar 28 13:35:52 2012 +0200 Improved the progress bar in our SingleCellSimulation view plugin. commit 04d2a48f8ce25927f45a71814de72862e95732b9 Author: Alan Garny '' Date: Tue Mar 27 20:31:33 2012 +0200 Some minor refactoring and cleaning up '(#57).' commit b54e913d9680777f84e3da9891491fe42af7a305 Author: Alan Garny '' Date: Tue Mar 27 19:54:53 2012 +0200 Some minor refactoring '(#57).' commit c89934dde837da6b17f4918156ff6cfa39896819 Author: Alan Garny '' Date: Tue Mar 27 18:59:29 2012 +0200 Minor improvement to our CellML annotation view '(#78).' commit 11e78a89f1df8f79031d7255898e90495df85776 Author: Alan Garny '' Date: Tue Mar 27 18:29:37 2012 +0200 Working towards retrieving all the units, components, groups and connections from a CellML file '(#72).' commit 97abbe9531ae61e7e4176d905a4decf48493ffb7 Author: Alan Garny '' Date: Tue Mar 27 18:27:55 2012 +0200 Closes '#81.' The issue was indeed that we were resetting our CellML object while we 'shouldn'\''t.' commit c46c9990c62a900c3d2f30fa9e37d8b4e21facbb Author: Alan Garny '' Date: Tue Mar 27 16:52:39 2012 +0200 Some work on our CellML annotation view '(#78).' Some minor cleaning up '(#57).' commit 98210c56f0f0ec4bc45a00da412e14479724f816 Author: Alan Garny '' Date: Tue Mar 27 15:29:00 2012 +0200 Some work on our CellML Annotation view '(#78).' commit 98523b546deed6705a536ffe5dc9b3a8af41c45b Author: Alan Garny '' Date: Tue Mar 27 14:37:53 2012 +0200 Some minor refactoring '(#57).' commit bf1cde9412314ac8061d25c0580b887ab3f515b3 Author: Alan Garny '' Date: Mon Mar 26 20:22:59 2012 +0200 Closes '#80.' commit 1c594a90f299749382591e2795cdc9e7e5c39033 Author: Alan Garny '' Date: Mon Mar 26 19:12:36 2012 +0200 Minor improvement to our SUNDIALS plugin. commit 92ff99cbe5dc05bb965d817a8042bcd620604b6f Author: Alan Garny '' Date: Mon Mar 26 18:56:38 2012 +0200 Upgraded the SUNDIALS library to version 2.5.0 from 2.4.0. commit 713494b8d6909a2279afbf0de6982616035936ec Author: Alan Garny '' Date: Mon Mar 26 18:05:35 2012 +0200 Some work on our CellML Annotation view '(#78).' Some minor cleaning up '(#57).' commit fe0553ffb5e8758b5678728737ca300efbc5e4f0 Author: Alan Garny '' Date: Mon Mar 26 17:28:28 2012 +0200 We have upgraded to Ubuntu 11.10, so updated the 'developer'\''s' documentation. commit 1d68a300b0150b16694cc55cd93e5987b98cf360 Author: Alan Garny '' Date: Mon Mar 26 17:27:17 2012 +0200 Minor cleaning up '(#57).' commit aa1118c795c0277396b507ee58b5f1eb3e91448c Author: Alan Garny '' Date: Fri Mar 23 21:50:41 2012 +0100 Made the views from our RawCellMLView and RawView plugins accept the focus. commit ac5450fefadaa5b5697ede89b243eb1f154bc9e7 Author: Alan Garny '' Date: Fri Mar 23 21:05:04 2012 +0100 Minor improvement to our central widget and some cleaning up '(#57).' commit 3fd543130ac3bb5dfb35158143b038667910b8d2 Author: Alan Garny '' Date: Fri Mar 23 19:56:57 2012 +0100 Keep track of the height of both the viewer and the editor in our RawCellMLView plugin '(#16).' commit 01fcf423895c0286eb86d4f99e3db5b054480aa9 Author: Alan Garny '' Date: Fri Mar 23 19:23:51 2012 +0100 Some work on our RawCellMLView plugin '(#16).' commit 0667e834558a282fce00abc7eec3a0e63cec503b Author: Alan Garny '' Date: Fri Mar 23 19:23:02 2012 +0100 Some more minor cleaning up '(#57).' commit 7968ea829b2034c67d65b91d211c4ba2bfcebdc0 Author: Alan Garny '' Date: Fri Mar 23 19:22:26 2012 +0100 Some minor cleaning up '(#57).' commit f9a9b6b02acc1b32192c7de4a05eddd7ea62f782 Merge: 78593618c 61627ca36 Author: Alan Garny '' Date: Fri Mar 23 09:34:24 2012 -0700 Merge pull request '#79' from mirams/master Re-implement build on oneiric function. commit 61627ca36312d4e76b1837d9832ce737b77927ae Author: Gary Mirams '' Date: Fri Mar 23 15:42:08 2012 +0000 re-implement new '#include' for oneiric commit 78593618ce2f5894e19d52b9a1c169923dfc2bbd Author: Alan Garny '' Date: Fri Mar 23 15:54:29 2012 +0100 Addressed a small bundling issue on Mac OS X with regards our RawCellMLView plugin '(#16).' commit fb8b08c5a7b7b54f2f7ee5f4ed7be785fe61f0f7 Author: Alan Garny '' Date: Fri Mar 23 15:50:25 2012 +0100 Some work on our RawCellMLView plugin '(#16).' commit bef2e41a3725103ba9c32526af2799941e03fb2e Author: Alan Garny '' Date: Fri Mar 23 15:38:23 2012 +0100 Minor cleaning up '(#57).' commit de1f2f1785ec4647ac29844f41d4f22fccfd1933 Author: Alan Garny '' Date: Fri Mar 23 15:36:59 2012 +0100 Worked some more on our RawCellMLView plugin '(#16).' commit b704b0575050aec37d4ce2a689b0e7855fdd8934 Author: Alan Garny '' Date: Fri Mar 23 15:20:23 2012 +0100 Some work on RawCellMLView plugin '(#16).' commit f5746adc7c1df13172a82090a3e64ebf3191dc3d Author: Alan Garny '' Date: Fri Mar 23 15:06:48 2012 +0100 Some work on our RawView plugin '(#76).' commit b599dfdd8a8d0605f9d0b1052b19c05bd35e4fc0 Author: Alan Garny '' Date: Fri Mar 23 14:42:47 2012 +0100 Some work on our CellMLAnnotationView plugin '(#78).' commit 9b6e342cfb8095b79bbbd27b02d2fd7854864d22 Author: Alan Garny '' Date: Fri Mar 23 14:40:30 2012 +0100 Some work towards our RawCellMLView plugin '(#16).' commit c317a18de5ee6bac07e7f8f1565537d74966878b Author: Alan Garny '' Date: Fri Mar 23 14:39:04 2012 +0100 Some more minor cleaning up '(#57).' commit 9958da08f9ac22cd405f8604ffdac5a687fa2848 Author: Alan Garny '' Date: Fri Mar 23 14:34:35 2012 +0100 Some minor cleaning up '(#57).' commit ac13ca2767383d9c17aba8c72fb2bd338c7c7293 Author: Alan Garny '' Date: Fri Mar 23 14:25:40 2012 +0100 Some work towards our RawView plugin '(#76).' commit 50561886e9b2d7fe79e483219ae3087ae44b39e3 Author: Alan Garny '' Date: Fri Mar 23 13:41:40 2012 +0100 Minor cleaning up '(#57).' commit 74a563c7394d47b4f3e6bea1d99af1b2bafe17a8 Author: Alan Garny '' Date: Fri Mar 23 13:28:17 2012 +0100 Some refactoring '(closes' '#75' and closes '#76).' commit 7edc6bcaaeaeaec620053e85ed6f7d6c11e4b8ef Author: Alan Garny '' Date: Fri Mar 23 10:41:18 2012 +0100 Addressed a small issue with trying to run an ''\''unsupported'\''' model '(see' '#69).' commit 3860bcdfe32e38d1f963e24893ab64115277f9a6 Author: Alan Garny '' Date: Fri Mar 23 10:28:49 2012 +0100 Some minor cleaning up '(#57).' commit 06047d567b03698673cb0794c4a64257b67a1e41 Author: Alan Garny '' Date: Thu Mar 22 15:59:37 2012 +0100 Keeps track of the active graph panel '(closes' '#70).' commit c7e8be03fbbf2a28888a6b5dad33585c14dc2339 Author: Alan Garny '' Date: Wed Mar 21 17:37:19 2012 +0100 Argh, the joy of developing a cross-platform application... commit 4426c8511f8dfbe1357a594dfbd50f76d6b8c37e Author: Alan Garny '' Date: Wed Mar 21 17:13:56 2012 +0100 Minor cleaning up '(#57).' commit 4b71215a1a2bd1d267bfce3fc9ba786dfdc90a68 Author: Alan Garny '' Date: Wed Mar 21 01:34:11 2012 +0100 Address an issue with '#includes' that were C-like rather than C++ like '(#69).' commit 3c2ccb490d88b3990f075b9ea6e7edaad37ce3d0 Author: Alan Garny '' Date: Tue Mar 20 13:46:19 2012 +0100 Added support for the Luo-Rudy 1991 model in our SingleCellSimulation plugin. commit 6fb49c02712f9d00b3bfbedbedbe17a8db02ac1f Merge: 3c4c8767c ce3ef39b3 Author: Alan Garny '' Date: Tue Mar 20 00:36:53 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit ce3ef39b3db079af2c23e7d7dda29b5de3f5b66e Merge: 56a9204e4 e7d7e39cd Author: Alan Garny '' Date: Mon Mar 19 16:36:37 2012 -0700 Merge pull request '#69' from mirams/master Get a build working on Oneiric Ocelot commit e7d7e39cd8325337c08a2d2a26a107652497e0e6 Author: Gary Mirams '' Date: Mon Mar 19 17:33:51 2012 +0000 Try and get a build working on Oeneiric using ubuntu packages for qt-sdk commit 3c4c8767c0801f1a3dbbd188edcd3894a84288d8 Author: Alan Garny '' Date: Mon Mar 19 14:31:50 2012 +0100 Minor cleaning up '(#57).' commit 56a9204e45146f2f11201f2564d594d3ad1371f7 Author: Alan Garny '' Date: Sun Mar 18 23:50:33 2012 +0100 Removed our ''\''support'\''' for events / reset rules since I 'don'\''t' currently believe that they are ''\''properly'\''' handled by the CellML API '(see' 'https://tracker.physiomeproject.org/show_bug.cgi?id=3238).' commit f2fa8dfdca8fb67d6d7e99e1dbf4ceb79385ae17 Author: Alan Garny '' Date: Sun Mar 18 23:40:29 2012 +0100 Some minor cleaning up of our SingleCellSimulation plugin '(#57),' as well as improvement to our IDA solver plugin '(#65)' by updating the old states/rates after each internal step of the IDA solver and by making sure that we retrieve the initial states/rates for the model '(following' the call to 'IDACalcIC()).' commit d70f1609c61db673b3917aa97475e2657e2cb24c Author: Alan Garny '' Date: Sun Mar 18 14:48:31 2012 +0100 Fixed the issue with the IDA solver working in some cases and not others. That was a stupid issue of arrays being randomly initialised '(classic!).' commit f0f435fe971789cc8964b9f6b798b539febacab1 Author: Alan Garny '' Date: Sun Mar 18 11:45:55 2012 +0100 Minor editing of comments. commit 27e82362153da1d0ae17c3a8e69e1bd5a1883349 Author: Alan Garny '' Date: Sun Mar 18 11:39:10 2012 +0100 Some minor cleaning up '(#57).' commit fcda74e1bdf786d5507692faacc747d949c9244a Author: Alan Garny '' Date: Sun Mar 18 11:27:26 2012 +0100 Added ''\''support'\''' for another DAE model. Also addressed an ''\''issue'\''' with CCGS generating a 'rootfind_' call in the case of some DAE models. Not sure what this call all about and 'it'\''s' not something that we currently support for the 'initializeConstants()' function, so we remove those calls '(since' CCGS 'don'\''t' allow us to customise things in that 'respect...).' commit 8eca66a81b428665335a223ad0768d9256a55f17 Author: Alan Garny '' Date: Sun Mar 18 09:19:06 2012 +0100 Updated the Windows version of the CellML API to the nightly build from 14 March 2012. Indeed, some more work has been done on trying to make the API faster on that platform. However, a very quick test revealed no improvement with regards to its 'speed...!?' commit c1349cc81617819d02fd82dfb49462ae5e9c732d Author: Alan Garny '' Date: Sun Mar 18 02:11:30 2012 +0100 Some minor editing for our solver plugins. commit 1dba04792dc56be0bd4625ba29d5b4577d3fd7dc Author: Alan Garny '' Date: Sun Mar 18 01:38:05 2012 +0100 Added ''\''support'\''' for another DAE model. commit 4fe4f58579a0e85f6988ee5401e531965de8c8dc Author: Alan Garny '' Date: Sun Mar 18 01:33:48 2012 +0100 Working some more on our IDA solver plugin '(#65).' Was able to solve a DAE model, but not 'another...?!' commit ee6d847f0d35ed3abc5b25fd9013ff6cb98c1c23 Author: Alan Garny '' Date: Sat Mar 17 16:54:46 2012 +0100 Minor cleaning up '(#57).' commit 09b25a0d85ecbd0d527ec4ddb62a59a878da4fcf Author: Alan Garny '' Date: Sat Mar 17 16:34:42 2012 +0100 Some cleaning up '(#57).' commit 6c3d814884f9a7951af956da5e8b234d35058ae7 Author: Alan Garny '' Date: Sat Mar 17 16:25:52 2012 +0100 Some minor work on our IDA solver plugin '(#65)' and some minor cleaning up '(#57).' commit 562d917e64f5abfc82adf49dd3f242b380d8e7ae Author: Alan Garny '' Date: Sat Mar 17 16:13:17 2012 +0100 Some minor refactoring '(#57).' commit c008b571126174109b7d1dd98fb752e5569139ac Author: Alan Garny '' Date: Sat Mar 17 16:09:40 2012 +0100 Some more work on our IDA solver plugin '(#65).' commit f26c99c47a5e575bb3a923c5d0269f318562cb5c Author: Alan Garny '' Date: Sat Mar 17 11:18:46 2012 +0100 Working on our IDA solver plugin '(#65).' commit 4ef4d21d111d54a1699a62b186596419ec07fbee Author: Alan Garny '' Date: Sat Mar 17 10:47:10 2012 +0100 Some cleaning up of our solver code '(#57).' commit 4c324a1ebe8a5e062b7dde406b8ea9bb7441d904 Author: Alan Garny '' Date: Wed Mar 14 11:41:45 2012 +1300 Minor cleaning up '(#57).' commit fdd9dad039c6cb773f6c0c61b2138be88c537260 Author: Alan Garny '' Date: Tue Mar 13 09:22:47 2012 +1300 Added the CellML Workshop 2012 presentation as a dissemination document. commit df7eb44a2567611a0ab68928fddc64c2b368612c Author: Alan Garny '' Date: Sun Mar 11 19:28:07 2012 +1300 Some refactoring '(#57)' by moving some GUI Interface methods to the Core Interface. commit 27d3c1b73342e248428023d3bfb2308e7911c3cc Author: Alan Garny '' Date: Sun Mar 11 18:31:42 2012 +1300 Some minor cleaning up '(#57).' commit e6ea792a4ea745eefc1483d5f0c0d9da71aa74a4 Author: Alan Garny '' Date: Sun Mar 11 15:15:02 2012 +1300 Minor update to the user documentation. commit eda93643b6c424c5f999cc01a3067615e232a549 Author: Alan Garny '' Date: Sun Mar 11 13:57:44 2012 +1300 Minor update to the README.txt file for building the LLVM shared library. commit f2faa43a447b3354d897b60d67aa0aaf61a5b9f5 Author: Alan Garny '' Date: Sat Mar 10 21:43:27 2012 +1300 Some more work for the CellML workshop by allowing ''\''fast'\''' plotting of simulation data. commit 3c4a6dd31463b35c79d732b66866590e7a9a1385 Author: Alan Garny '' Date: Sat Mar 10 21:33:09 2012 +1300 A bit more work for the CellML workshop by plotting the simulation data as they are being computed. 'It'\''s' very slow, but good enough to demonstrate things. commit 8c57016133fcdf2b016d95f475d05dc505ac45a8 Author: Alan Garny '' Date: Sat Mar 10 00:59:57 2012 +1300 Update the progress bar in the single cell simulation view. Need to make the progress visible though '(when' a long simulation is to be 'run)...' commit 09026b6a96077d74c19e0024839ce7c93a6a1128 Author: Alan Garny '' Date: Sat Mar 10 00:44:36 2012 +1300 Some minor refactoring for the CellML workshop '(#57).' commit 706a424393ab551b8a3519b3c0fea137a85ba97a Author: Alan Garny '' Date: Sat Mar 10 00:05:58 2012 +1300 A bit of refactoring '(#57)' in preparation for the forthcoming CellML workshop. commit dd05bcb396a15f3988e2ec4483f8b7e6b19d0e9c Author: Alan Garny '' Date: Fri Mar 9 18:08:25 2012 +1300 Slightly improved the speed of our CVODE solver. commit bdd2edf890d7990c3ded9f2ff9a56cab519d1c88 Author: Alan Garny '' Date: Fri Mar 9 17:56:31 2012 +1300 Minor improvement to our CVODE solver '(#64).' commit 016141b76b786a54a6741017e96748b84ae6b5f9 Author: Alan Garny '' Date: Fri Mar 9 17:51:13 2012 +1300 Can now get the CVODE solver to work '(#64),' but might be able to optimise it a bit. commit 074aef8abda2b23f8c65358fb8c598c483e0f0c8 Author: Alan Garny '' Date: Fri Mar 9 16:33:01 2012 +1300 Some more work on the CVODE solver '(#64).' commit d5bb05d52aef02bf4240b4daac8366e1ac0ca7e5 Author: Alan Garny '' Date: Fri Mar 9 15:46:09 2012 +1300 Working some more on the CVODE solver '(#64)' and on our solver interface '(#62).' commit 32d5943e6c2503e0fc10e6b92c3666c96c3972ba Author: Alan Garny '' Date: Fri Mar 9 14:24:59 2012 +1300 Some further work towards the CVODE solver '(#64).' commit e617474a53bd19fa5b410584f0c9c3a53f7f53eb Author: Alan Garny '' Date: Fri Mar 9 12:09:42 2012 +1300 Setting a few CVODE parameter values in our SingleCellSimulation plugin so we can later on test our CVODE solver '(#64).' commit 9eea5c34b6dd765ffb00a7ee7a72357c1531e608 Author: Alan Garny '' Date: Fri Mar 9 11:55:25 2012 +1300 Set stricter default tolerances for the CVODE solver '(#64).' commit e21efa5f66e170b12b41b1bbe3af1a2164dd2693 Author: Alan Garny '' Date: Fri Mar 9 11:47:32 2012 +1300 Working some more on the CVODE solver '(#64).' Some minor cleaning up too '(#57).' commit 8a5ab738cb522a76c68c47cab3955864c30e6446 Author: Alan Garny '' Date: Fri Mar 9 10:20:06 2012 +1300 Started work on a CVODE solver '(#64).' '(Right' now, 'it'\''s' just a copy/paste of the Forward Euler 'solver.)' commit 681180bbfee289e9c553742b3f4cdfd0d31db866 Author: Alan Garny '' Date: Fri Mar 9 09:35:07 2012 +1300 Some minor cleaning up and refactoring '(#57).' commit 96fa1115f6c26e0ff748ec6081c5f4aa99148712 Author: Alan Garny '' Date: Thu Mar 8 20:17:36 2012 +1300 Some minor cleaning up '(#57).' commit 0153db41239d0b2c43a01fb277995dc1a6a1f612 Author: Alan Garny '' Date: Thu Mar 8 20:16:14 2012 +1300 Can now run a CellML file using our Forward Euler solver plugin. Closes '#63.' commit 6b2fb6e6f5ea25fa0d7663f571472d4d8f04a22f Author: Alan Garny '' Date: Thu Mar 8 16:55:31 2012 +1300 Minor update to the developer documentation. commit 3cc7169e744c6bcb55fc0d63dbd2145d79a51368 Author: Alan Garny '' Date: Thu Mar 8 10:43:31 2012 +1300 Make the SingleCellSimulation plugin depend on the CoreSolver plugin. commit 0b760973edb48abf6b57ba9f1e344029bd1e6c15 Author: Alan Garny '' Date: Thu Mar 8 10:41:11 2012 +1300 Working towards '#62' and '#63' '(i.e.' solvers and ODE solvers in 'particular).' commit 6814fa03d11be2e9c6c6cff2f790235e01237205 Author: Alan Garny '' Date: Thu Mar 8 10:31:09 2012 +1300 Added a dependency on the CoreSolver plugin for the CoreSimulation plugin. commit f5cd9a5a42110bf10ae2816d29fdf56cd526280b Author: Alan Garny '' Date: Tue Mar 6 19:39:06 2012 +1300 Some minor refactoring '(#57).' commit 27a49b039e6494e2ad02119c995a2ec8ad436ade Author: Alan Garny '' Date: Tue Mar 6 19:32:42 2012 +1300 Output '(for' testing/debugging 'purposes)' the name and type of properties supported by a solver. commit fc340c874425710253959ffe6e1379c33fff72cd Author: Alan Garny '' Date: Tue Mar 6 19:17:57 2012 +1300 Some more work towards '#62' and '#63.' Now, we can specify properties that can be modified in a solver. commit 8d14c46b3c8e3382672e7e0d68f0d4e4206f6e99 Author: Alan Garny '' Date: Tue Mar 6 17:09:12 2012 +1300 Some cleaning up '(#57)' for '#62' and '#63.' commit 0a124658daf7e099cdc5abe605fe116a1eaf372f Author: Alan Garny '' Date: Tue Mar 6 16:53:45 2012 +1300 Getting there with '#63.' commit c560a99ae2790d655ac171c3249d469e5e3865b8 Author: Alan Garny '' Date: Tue Mar 6 15:20:56 2012 +1300 Working some more on '#62' and '#63.' commit f30285e94be51f0829f424d4d90952c21ed12b51 Author: Alan Garny '' Date: Tue Mar 6 14:37:33 2012 +1300 Working towards '#62' and '#63.' commit 696d85dbf6a1cd4b042b0a251a5b7a0e6afa5a3d Author: Alan Garny '' Date: Tue Mar 6 12:37:37 2012 +1300 Some minor cleaning up '(there' is no CellMLSupport plugin tests as such, 'so...;' see '#57).' commit a05e0a2e81b4b4995b58634b16c9072be255147f Author: Alan Garny '' Date: Tue Mar 6 12:35:10 2012 +1300 Working some more towards '#62' and '#63.' commit eba0218d1eba6398d73f2721e3538e60ac6dadad Author: Alan Garny '' Date: Tue Mar 6 12:27:46 2012 +1300 Working towards '#62' and '#63.' commit fdb7293d8fdd88de52dc71c627fe69cb36033850 Author: Alan Garny '' Date: Tue Mar 6 11:24:02 2012 +1300 Working towards '#63.' commit ed7f4c78148c06dc46d742b861f432c01d9ec6c8 Author: Alan Garny '' Date: Tue Mar 6 11:10:17 2012 +1300 Some work towards '#62' and '#63.' commit dc45aaddb78542fcc237e4eadb07f8b4711fac6a Author: Alan Garny '' Date: Tue Mar 6 11:03:37 2012 +1300 Minor cleaning up '(#57).' commit 052695d2b8c4aa753901648bf42724b07d143ec1 Author: Alan Garny '' Date: Mon Mar 5 18:00:59 2012 +1300 Some more work on '#62' '(solver' 'interface)' and '#63' '(Forward' Euler 'solver).' This time also adding the solver interface 'files!' commit 6040fe43459767e1d278807802814f971aa7610f Author: Alan Garny '' Date: Mon Mar 5 17:46:55 2012 +1300 Working on '#62' '(solver' 'interface).' commit c886e9f0331cbf9afdd4137dde71d3734d77bcfc Author: Alan Garny '' Date: Mon Mar 5 17:31:11 2012 +1300 Starting work on '#63' '(Forward' Euler solver 'plugin).' commit f5e487b923a61c999ec484406c468e9275369d01 Author: Alan Garny '' Date: Mon Mar 5 17:04:38 2012 +1300 Closes '#66.' commit 035a33683b81a09a32c4ef33a4562c95a99463c6 Author: Alan Garny '' Date: Mon Mar 5 15:22:49 2012 +1300 Minor refactoring '(#57).' commit b20c7f1d725d5154a485736b8eb105d6fa5c7a95 Author: Alan Garny '' Date: Mon Mar 5 14:29:57 2012 +1300 Addressed a couple of memory issues reported by Valgring. commit 9bc3bd630e220a49f7a0c6b2437522197f151508 Author: Alan Garny '' Date: Mon Mar 5 11:40:24 2012 +1300 Some minor cleaning up '(#57).' commit 4a6911d2eb6ef97b1e1f448f315d8fa2b4c264df Author: Alan Garny '' Date: Mon Mar 5 11:37:04 2012 +1300 Had forgotten to initialise a property in our HelpWidget class. This resulted in an ''\''error'\''' from valgrind. commit da17d477d0d25a353525730833d765fd2b3f5203 Author: Alan Garny '' Date: Sun Mar 4 16:14:40 2012 +1300 Closes '#61.' commit 7bae343a6dc279e0ce33eb319abbf074024f9e79 Author: Alan Garny '' Date: Sun Mar 4 16:00:48 2012 +1300 Some minor cleaning up '(#57).' Also a couple of minor fixes with regards to emitting some signals after having loaded the settings of some widgets which signals can be used to guide the availability of certain of their features. commit 913afedb38a048d6463207c925466a025b535900 Author: Alan Garny '' Date: Sun Mar 4 05:44:09 2012 +1300 Another minor fix for our FileOrganiserWidget class. commit 6aa54adc6d14af72a16439a81fb29e660a65930e Author: Alan Garny '' Date: Sun Mar 4 05:37:13 2012 +1300 Fixed a small bug in our FileOrganiserWidget class. commit f39104a19878dc82a6c4b0411a24a5e7b3b49337 Author: Alan Garny '' Date: Sun Mar 4 05:20:52 2012 +1300 Some more refactoring '(#57).' commit fab70f39238a27884feb6c400738c61b779d193b Author: Alan Garny '' Date: Sun Mar 4 04:35:58 2012 +1300 Some minor refactoring '(#57).' commit 677b7b6a35660c097b17ec833279520f54837a97 Author: Alan Garny '' Date: Sun Mar 4 04:10:58 2012 +1300 Minor refactoring '(#57).' commit 06d5d0c5458d20aefe553175414af07e3b50e204 Author: Alan Garny '' Date: Sun Mar 4 03:49:58 2012 +1300 Closes '#60.' commit b73e92153af165e1f4e0284b2104ec359272a9c7 Author: Alan Garny '' Date: Sun Mar 4 02:47:30 2012 +1300 Minor refactoring '(#57).' commit 8d70f65e30932a023a420828674eb31bc82d7cb5 Author: Alan Garny '' Date: Sun Mar 4 02:18:20 2012 +1300 Argh, forgot something in my previous commit... commit b6aceb6ad8676549955450454b897f493faa8a1f Author: Alan Garny '' Date: Sun Mar 4 01:53:19 2012 +1300 Minor cleaning up '(#57).' commit 5bcb36df20dfeb5699d850bb6e2ee632124cc397 Author: Alan Garny '' Date: Sun Mar 4 00:37:50 2012 +1300 Some minor cleaning up '(#57).' commit 86f26fa582b5293ec11d208b6afd5ffbf957c7ad Author: Alan Garny '' Date: Sat Mar 3 22:15:41 2012 +1300 Slight improvement to our FileBrowser plugin as part of issue '#60.' commit c120b099c4d443964a5116dca984fb2c3c7a3eff Author: Alan Garny '' Date: Sat Mar 3 21:20:18 2012 +1300 Slight update to the developer documentation. commit 0ba60ae726fb6c8f9adb359cb7a2b530c41b941e Author: Alan Garny '' Date: Sat Mar 3 20:03:09 2012 +1300 Some minor cleaning up '(#57).' commit 11d6d3541d4e6790b9e137a8b4bc15432d2360c1 Author: Alan Garny '' Date: Sat Mar 3 19:55:10 2012 +1300 Some more work towards '#60.' commit d5950f57e4bf1e7143ae9b88ebb55b41ca20c6a1 Author: Alan Garny '' Date: Sat Mar 3 18:56:08 2012 +1300 Some minor cleaning up '(#57).' commit b084b1dc474187c673e8f9329d317727b064ac75 Author: Alan Garny '' Date: Sat Mar 3 18:01:11 2012 +1300 Some more work towards '#60.' Also some cleaning up in the process '(#57).' commit 677c91a463d7d1e2d7552666cd860b006f96f822 Author: Alan Garny '' Date: Sat Mar 3 16:45:25 2012 +1300 Some cleaning up '(#57).' commit bb2c37f667b6f795a88b1c5959391492d8a06277 Author: Alan Garny '' Date: Sat Mar 3 16:45:15 2012 +1300 Some work towards '#60.' commit 35024efc3ffc28ac4be80d31f0cf9b2105d58335 Author: Alan Garny '' Date: Sat Mar 3 16:18:10 2012 +1300 Some more work towards '#60.' commit 85e0fe8371f75b81338e80bef6433357644ebc09 Author: Alan Garny '' Date: Sat Mar 3 16:15:49 2012 +1300 Some work towards '#60.' commit 82fab12f078bca96ed5f7c6bd8f672db051d3e63 Author: Alan Garny '' Date: Sat Mar 3 15:50:43 2012 +1300 Slight improvement to '#59.' commit 68ce3a0c91f655649c7e4f737674c26e05d6b3a3 Author: Alan Garny '' Date: Sat Mar 3 15:30:54 2012 +1300 Closes '#59.' commit 4cd80386f5c73ce23da61ba2de0755fdb575cef3 Author: Alan Garny '' Date: Sat Mar 3 13:40:26 2012 +1300 Closes '#58.' Also some cleaning up '(issue' '#57).' commit b4b4823f7f3a4a4e3f4c425809d7c29c244c7dc9 Author: Alan Garny '' Date: Sat Mar 3 11:43:24 2012 +1300 Closes '#56.' commit b10cd6e0830f4e88170e2acef867c470ccaf7bc0 Author: Alan Garny '' Date: Fri Mar 2 23:00:58 2012 +1300 Fixes '#55.' commit e30799259db8e66b752dd6b0cb71fe792aa19e98 Author: Alan Garny '' Date: Fri Mar 2 22:51:38 2012 +1300 Improved issue '#54' by taking into account the version of Mac OS X the user uses. commit 1d305eb2b8599f50b5ed4436a42cc9f1a71fa17f Author: Alan Garny '' Date: Fri Mar 2 22:35:07 2012 +1300 Closes '#54' '(again!).' commit 942789294db56d7794199c4af9ebe72236f1a419 Author: Alan Garny '' Date: Fri Mar 2 22:29:20 2012 +1300 Improved the implementation of '#54.' commit 071785235d6a020c455b64fd24eb24b4a89384b7 Author: Alan Garny '' Date: Fri Mar 2 22:14:52 2012 +1300 Closes '#54.' commit d510021284e91c90da75a94c0e1948b0c6b485f8 Author: Alan Garny '' Date: Fri Mar 2 22:00:40 2012 +1300 Closes '#53.' commit df73e01a208b17e7a34b104cb64355900387f48a Author: Alan Garny '' Date: Fri Mar 2 21:49:21 2012 +1300 Reworked part of the GUI interface a bit. commit 60d1522d69f85d79bdcdc8d6185b182a0ca76f93 Author: Alan Garny '' Date: Fri Mar 2 21:35:19 2012 +1300 Added a new Widget class which inherits both from QWidget and CommonWidget. commit fca6144b39bde1dc98ab6221919212f6805d4620 Author: Alan Garny '' Date: Fri Mar 2 21:34:34 2012 +1300 Reworked part of the Core interface. commit 5fae7c2e4430725d64243da0a3ab5e2d4ce4166c Author: Alan Garny '' Date: Fri Mar 2 21:11:28 2012 +1300 Minor improvement to our SingleCellSimulationGraphPanels class. commit f23bf322072f21045732cf9c9cece17f7e1bb63d Author: Alan Garny '' Date: Fri Mar 2 20:26:47 2012 +1300 Minor editing of comments. commit 36db03a5c1ad8ddbd1f77a2969b8ae431075acd6 Author: Alan Garny '' Date: Fri Mar 2 17:16:22 2012 +1300 Fixes '#52.' commit 8aaa404ac616d755cfcbe467f6ee9b70985902de Author: Alan Garny '' Date: Fri Mar 2 16:59:43 2012 +1300 Fixes '#51.' commit 5383b27e57ec301ab38be57008ea944dbb1aa178 Author: Alan Garny '' Date: Fri Mar 2 16:48:19 2012 +1300 Working some more towards issue '#51.' commit ff03233e271bdae7660e29c870db5889140a7705 Author: Alan Garny '' Date: Fri Mar 2 16:34:18 2012 +1300 Working towards issue '#51.' commit acbc2ba754057cce23e6882830c4fc08968a5798 Author: Alan Garny '' Date: Fri Mar 2 16:28:26 2012 +1300 Minor refactoring. commit ca0e11b9246427bf70b7e8b7bc8fe5f542ac61a8 Author: Alan Garny '' Date: Fri Mar 2 16:23:25 2012 +1300 Closes issue '#50.' commit cd9b567e8603133764be3e3ceaba815a7fc3e338 Author: Alan Garny '' Date: Fri Mar 2 15:21:17 2012 +1300 Closes '#49.' Also some cleaning up. commit c82c4fca2af798be241f5e7b2b960153538db1b6 Author: Alan Garny '' Date: Fri Mar 2 11:47:20 2012 +1300 Some refactoring of our single cell simulation plugin code. commit b24a7d78e5836e75d5be1a003f1eb74f94022a2e Author: Alan Garny '' Date: Fri Mar 2 10:38:54 2012 +1300 Slight update to the developer documentation. commit a2a4a94af4ad0802afd3b0c2a649fd156fa49310 Author: Alan Garny '' Date: Thu Mar 1 19:34:15 2012 +1300 Fixed a small issue with our single cell simulation view. The toolbar buttons 'didn'\''t' have their description shown on the status bar. commit 70065159ce63683cc427703151ec13695d9ddba2 Author: Alan Garny '' Date: Thu Mar 1 19:11:14 2012 +1300 Minor editing of comments. commit 96dacd0b8899a7ff0c278a7efb6a083ce66cc424 Author: Alan Garny '' Date: Thu Mar 1 19:08:35 2012 +1300 Added some buttons to the toolbar that we use in our single cell simulation view. commit d78cd10b41505bbbaf25b7035261d4303c896721 Author: Alan Garny '' Date: Thu Mar 1 18:30:19 2012 +1300 Minor editing with regards to tracing information. commit 04a7b8c69a80e2ed96f11493d28406e842a4ad83 Author: Alan Garny '' Date: Thu Mar 1 18:17:52 2012 +1300 Starting to make use of our simulation output widget to provide the user with some information about the simulation outcome. commit 6721d5b4a906228814e7e72a7a1d5e01eb204477 Author: Alan Garny '' Date: Thu Mar 1 18:03:17 2012 +1300 Have the graph panels take as much space as possible in our single cell simulation view. commit f1eb1d73a1f62b9255d83c0da521c5b509dac5bc Author: Alan Garny '' Date: Thu Mar 1 17:04:20 2012 +1300 Minor improvement to our SingleCellSimulation plugin. commit c278a9d2edeb395935145450bdbfc31ae066638d Author: Alan Garny '' Date: Thu Mar 1 16:03:43 2012 +1300 Worked some more on our single cell simulation view. commit ecde51b6aca3251d460b1be332c333f1f38b10ef Author: Alan Garny '' Date: Thu Mar 1 14:31:13 2012 +1300 Some work towards the SingleCellSimulation plugin. Also some minor cleaning up. commit c7f4c5c74ae45ce7a4538f7e38018f82fbc19db6 Author: Alan Garny '' Date: Wed Feb 29 17:02:47 2012 +1300 The Viewer plugin was still manageable while it 'shouldn'\''t' be anymore. commit b2d26cd54ecc99968f4e50570553d0f382dae3b5 Author: Alan Garny '' Date: Wed Feb 29 15:41:36 2012 +1300 Minor editing of comments. commit 9492a3b56cc9ed4b727c99732c3f9c6224c538f3 Author: Alan Garny '' Date: Wed Feb 29 14:56:24 2012 +1300 Smaller version of the new CellML header files. commit 6b6bcdaf70a24b630652d2bcdf5b44b07de7cba3 Author: Alan Garny '' Date: Wed Feb 29 14:50:03 2012 +1300 Upgraded the CellML API to the current snapshot from version 1.10. commit 2a623ad1020aebaab2eff371f52e78a6d5d2da60 Merge: add2bb173 b124be809 Author: Alan Garny '' Date: Tue Feb 28 18:12:00 2012 +1300 Merge branch ''\''master'\''' of github.com:opencor/opencor commit b124be809a794f7fd150829f5747a51c2ea0e6e2 Author: Alan Garny '' Date: Tue Feb 28 18:11:31 2012 +1300 Minor update to our developer documentation. commit add2bb173e34a2bd4b9159e731fad77cd1efe7bd Author: Alan Garny '' Date: Tue Feb 28 18:10:41 2012 +1300 Minor improvement to our qtdependencies shell script. commit 40be967c0496dd53913a41536c52686413701c0e Author: Alan Garny '' Date: Tue Feb 28 17:52:08 2012 +1300 Updated the developer documentation some more. commit 3289bd3242a0f04d038eb0be672dd74174a72b9f Author: Alan Garny '' Date: Tue Feb 28 17:31:34 2012 +1300 We had some encoding issues with our qtdependencies shell script. commit e7c15d237a22258f8672d7f385ca94757f084b12 Author: Alan Garny '' Date: Tue Feb 28 17:07:56 2012 +1300 Minor omission... commit edf22b716f5f88c389a683c0b3b52419ea394619 Author: Alan Garny '' Date: Tue Feb 28 17:05:28 2012 +1300 We are not currently using OpenGL, so... commit 74811f0f512dec79065c13e2ba5f098f42a1459b Author: Alan Garny '' Date: Tue Feb 28 16:29:46 2012 +1300 'MainWindow::showSelf()' was still not working on Linux, but I have finally found a 'solution!' It 'doesn'\''t' currently handle the case where we try to activate an instance of OpenCOR located on a different workspace, but 'that'\''s' a 'start!' commit 4c447c67f21e384041b9cc7c484e908a04ada80f Author: Alan Garny '' Date: Tue Feb 28 11:02:23 2012 +1300 Editing of a comment. commit b5f3a9a99b0e4ce3356005ea8cb9c1e1d09fe544 Author: Alan Garny '' Date: Mon Feb 27 22:57:21 2012 +1300 Fixed an issue '(introduced' as a result of us now using Qt '4.8?)' whereby OpenCOR would be brought to the foreground upon startup. commit 94777bac7ec0f83d0bdb2abde98e90edcacddaf1 Author: Alan Garny '' Date: Mon Feb 27 18:20:19 2012 +1300 Oops, forgot to commit a file... commit cb337a7b75f94dc6609edc4a28619a928200e17e Author: Alan Garny '' Date: Mon Feb 27 18:19:28 2012 +1300 Removed the toolbars from the main window. As for the file browser, file organiser and help windows, toolbars probably ought to be part of a window/view. commit c0a03fdc9f7a3fc9a73226b40938c732ff194a6f Author: Alan Garny '' Date: Mon Feb 27 17:47:29 2012 +1300 Some renaming and cleaning up. commit 3258ebecd130313de36d25171981c6369519c9a7 Author: Alan Garny '' Date: Mon Feb 27 17:23:55 2012 +1300 Started work on having a proper view for the SingleCellSimulation plugin. commit 3d6835f389d9485881047e73f0b99b0ab3cb6229 Author: Alan Garny '' Date: Mon Feb 27 15:49:41 2012 +1300 Minor update to a UI file. commit ee9f7fc07fcaca00f22f4466061a26cfac1848eb Author: Alan Garny '' Date: Mon Feb 27 15:36:07 2012 +1300 Minor editing. commit ab1acba4f49265da6cd3133681dffd4b94b9e907 Author: Alan Garny '' Date: Mon Feb 27 10:06:24 2012 +1300 Slight improvement to our CellMLSupport plugin. Some minor cleaning up in our SingleCellSimulation plugin. commit a7de96e70e20a00399a2763c1dc83d5f7c3f3f16 Author: Alan Garny '' Date: Sun Feb 26 15:05:13 2012 +1300 Minor editing. commit 6cd8ab8a2ba3e9cfaabc5ab627b8488d8043f86f Author: Alan Garny '' Date: Sun Feb 26 13:52:19 2012 +1300 Added some timers to determine how much time it takes to do certain CellML-related things. Bottom line: the API is $'well\342\200\246' somewhat slow... commit a80fd5686fc2181e6ff9345b36e44db17a996125 Author: Alan Garny '' Date: Sun Feb 26 13:31:17 2012 +1300 Minor refactoring of our CellMLRuntime class. commit 78f7aeb237d3b9e3c56b3cefbf8abc41e94e2725 Author: Alan Garny '' Date: Sat Feb 25 10:51:49 2012 +1300 Minor editing. commit a4d3071ea486e6b5f73023c141f4714460ced64b Author: Alan Garny '' Date: Fri Feb 24 19:41:34 2012 +1300 I had completely forgotten to revert the code of our Windows console version of 'OpenCOR...!' commit 256c92cac70d9bd6a8bfee36ee12423e0bf6af9b Author: Alan Garny '' Date: Fri Feb 24 19:14:26 2012 +1300 Minor editing. commit 434b6aad0dcad0d57e4163dd9749832590269dbb Author: Alan Garny '' Date: Fri Feb 24 19:03:35 2012 +1300 Argh, I was deleting the CellmlFile 'object!' 'That'\''s' why things were crashing in the previous 'commit!' 'Doh!' Time to enjoy my weekend, 'methinks!' ':)' commit 9e4e63ba4a047e21b8a6a1f84e1585d345ace78a Author: Alan Garny '' Date: Fri Feb 24 16:33:40 2012 +1300 Working on relying on the CellML file manager, but retrieving a CellmlFile object works fine the first time round, but not 'afterwards...!?' Also some minor improvements here and there. commit c91b1e26e04edfc239ebfdd6347d7e43d69682a1 Author: Alan Garny '' Date: Fri Feb 24 02:25:31 2012 +0100 Moved the Viewer plugin from the Editing category to the Miscellaneous one '(since' it might also be useful to non-editing 'views).' commit a77b0b14f11afd7bd86c41d63d1e31886a8c03d9 Author: Alan Garny '' Date: Fri Feb 24 14:17:33 2012 +1300 Renamed MmlViewerWidget to ViewerWidget in the Viewer plugin. commit 9ca235728bd6cb2b5b6c403fafba83c3bed606eb Author: Alan Garny '' Date: Fri Feb 24 14:10:41 2012 +1300 Removed the Viewer window from the Viewer plugin, but kept the viewer widget itself. Indeed, we probably 'don'\''t' want a Viewer window sitting around all the time if we are in, say, simulation mode. Instead, whatever view needs a viewer should then create an instance of it. commit cff19f54c5cecbe53a3930b0fc22bd3b525375ac Author: Alan Garny '' Date: Fri Feb 24 13:55:23 2012 +1300 A bit of refactoring of our Core plugin. commit feabf20e68a89fd65981d013141ba873d1f2cb33 Author: Alan Garny '' Date: Fri Feb 24 12:02:50 2012 +1300 Done with the aforementioned renaming. commit 9cf31de357fc34643d8b24c1315ce27c4d466007 Author: Alan Garny '' Date: Fri Feb 24 11:33:15 2012 +1300 Starting work on the renaming of some CellMLSupport classes. commit f194a6db0122cc6863f9e957459823abce3f1d1b Author: Alan Garny '' Date: Fri Feb 24 11:16:30 2012 +1300 Some work on our CellML file manager. commit 78c9a8246434db070102040c6f2b3fe0eb3e2362 Author: Alan Garny '' Date: Fri Feb 24 10:42:01 2012 +1300 Simplified error reporting in our ComputerEngine class. commit 7ab1105ad1931bfcde33d44a3e55308d49043adc Author: Alan Garny '' Date: Thu Feb 23 19:57:37 2012 +1300 Our ''\''C'\''' parser 'doesn'\''t' currently support recovery and probably never will since there is no major advantage in supporting it. So, we only support one error for our ''\''C'\''' parser '(as' opposed to a list of errors as was the case until 'now).' Also remove the extra information for a computer error since it was only used in case LLVM 'couldn'\''t' parse some LLVM assembly code. So, that kind of information is not useful to an end-user while a programmer will output it while debugging a problem, if needed. Updated our tests for the Computer plugin, as a result of the aforementioned changes. commit 3c66d48d5fb4095e5692903d12de70103e9e54d0 Author: Alan Garny '' Date: Thu Feb 23 18:58:01 2012 +1300 Minor improvement to our CellML model runtime class and our single cell simulation plugin. commit b5dd965c5220e2c23f31d121cc1287e1d32e3612 Author: Alan Garny '' Date: Thu Feb 23 18:43:37 2012 +1300 Removed some old tests that are not necessary anymore '(since' they are now accounted for in our test 'framework).' Also cleaned up some code. Fixed a small issue '(in' the parsing of a 'function)' with definite integrals not being supported. commit d1892c06bf87ddf07cbbb3ecd97bd2a546364a15 Author: Alan Garny '' Date: Thu Feb 23 17:29:41 2012 +1300 Renamed our quotient function to quot in our Computer plugin. Also added some more tests. commit c186890172bf55b1392619063892a5926fe5f499 Author: Alan Garny '' Date: Thu Feb 23 16:35:20 2012 +1300 Our tests were all passing on Windows, Linux 64-bit and Mac OS X, but not Linux 32-bit. So, replaced calls to QVERIFY2 with QCOMPARE since we are dealing floating point numbers and we can benefit from the fuzzy aspect of QCOMPARE. commit 5cb02a70ba518a18a47422cafc51601dcc5b8ed7 Author: Alan Garny '' Date: Thu Feb 23 15:52:44 2012 +1300 And again more tests for our Computer plugin. commit 04857be3c83137e45894170c7057b9303b44b8f2 Author: Alan Garny '' Date: Thu Feb 23 15:40:28 2012 +1300 And again more tests for our Computer plugin. commit c7762301435faad9244dde290fc17ed98629d68a Author: Alan Garny '' Date: Thu Feb 23 15:23:50 2012 +1300 Yet more tests for our Computer plugin. commit a70967573c590eb9c583774d14313ff861ca8d39 Author: Alan Garny '' Date: Thu Feb 23 15:14:16 2012 +1300 Some more tests for our Computer plugin. commit 8892a7b6e85aa17bc362c038bcff9a7ec2e53a86 Author: Alan Garny '' Date: Thu Feb 23 14:56:32 2012 +1300 Added more tests for our Computer plugin. commit d645df84df8bd23f8a78678123ea1ee9313683ed Author: Alan Garny '' Date: Thu Feb 23 14:22:44 2012 +1300 Some minor refactoring with regards to focusing. commit 0cbbed1762c8ef4dfe56e786f69384b56393c249 Author: Alan Garny '' Date: Thu Feb 23 11:47:36 2012 +1300 Fixed, once and for all '(still' need to check on Mac OS 'X),' the focusing issue upon starting OpenCOR. The focus was always on the CellMLModelRepository plugin. commit 49c538f5735be9f44cb2418ac50d46d2618910c4 Author: Alan Garny '' Date: Thu Feb 23 11:28:46 2012 +1300 Minor editing of a comment. commit 10eb7c5f21dd6d7f7670341c66113ac48d7c92a2 Author: Alan Garny '' Date: Thu Feb 23 11:10:54 2012 +1300 Addressed an issue with the focus not being properly set when starting OpenCOR. Ideally, we want to the focus to be on the central widget. I seem to remember that it used to work before... maybe before upgrading to Qt '4.8?' Whatever the case, hopefully, this commit fixes this focus issue. commit 8574652a35a248df730bbf3eb813fadef5e7c87b Author: Alan Garny '' Date: Wed Feb 22 18:56:54 2012 +1300 Some cleaning up. commit a3b07fcced8fbc156a9b3f85a2f008d5ab763370 Author: Alan Garny '' Date: Wed Feb 22 18:50:16 2012 +1300 Slight improvements to our test simulation view. commit 1548fa4703ea0408123eb8863338d954ae7192b6 Author: Alan Garny '' Date: Wed Feb 22 18:49:45 2012 +1300 Added support for the ''\''C'\''' parsing of definite integrals from a CellML file, but 'don'\''t' yet support them when it comes to the generation of binary code. Some minor cleaning up. commit cd696bfbe09e61fef34ee657406964f68f2b116c Author: Alan Garny '' Date: Wed Feb 22 18:21:55 2012 +1300 Made compiler warnings into errors. Also slight modification to our recently added test CellML file. commit 271fd803bb167f71b4cace5699abbcc0f498d49e Author: Alan Garny '' Date: Wed Feb 22 14:54:37 2012 +1300 Added a new test CellML file. commit de7cd45529204d08851882a291affb4fb2ab62b5 Author: Alan Garny '' Date: Tue Feb 21 22:51:43 2012 +1300 Minor update to our Linux / Mac OS X shell scripts. commit f9bd41b0daf1bb37d30dcfffeb57385eb43c29e1 Author: Alan Garny '' Date: Tue Feb 21 18:26:11 2012 +1300 Added some more tests for our Computer plugin. Fixed a small issue with our computer engine in the process. commit 8cbd27cb6653e40c009d429e6556059e260ffde5 Author: Alan Garny '' Date: Tue Feb 21 16:45:32 2012 +1300 Removed the generation of code for definite integrals since we 'don'\''t' currently support them. commit 40bd3d08c0754ea2464ec8f8517032246713924b Author: Alan Garny '' Date: Tue Feb 21 14:00:00 2012 +1300 Added a comment about the CellMLSupport plugin not currently supporting definite integrals. commit d05340e484101de7461b5378e009d7e82f3b1273 Author: Alan Garny '' Date: Mon Feb 20 18:24:26 2012 +1300 Forgot a header file when upgrading QScintilla. commit 4f396494d9d2ed28eec8af8837d30c20b178b577 Author: Alan Garny '' Date: Mon Feb 20 18:01:47 2012 +1300 Removed the support for some languages in QScintilla '(since' we 'don'\''t' use them at this 'stage).' commit 9816b4950e9aba5d42763065b49e2e858bd1715a Author: Alan Garny '' Date: Mon Feb 20 17:52:57 2012 +1300 Upgraded QScintilla from version 2.6 to version 2.6.1. commit 850a8a2158440058eacd51cae4e535f610dcc303 Author: Alan Garny '' Date: Mon Feb 20 17:40:58 2012 +1300 Minor fix to the developer documentation. commit 58b62b5b117b1a892b1b4030690fa261ad7fd051 Author: Alan Garny '' Date: Sat Feb 18 21:55:08 2012 +1300 Some minor refactoring. Also added some comments about our ''\''global'\''' instance strategy '(formerly' known as singleton 'strategy).' commit b3bc20238c8cabc277f17a22d15fcaf3401df68c Author: Alan Garny '' Date: Sat Feb 18 18:22:22 2012 +1300 Ok, our singleton solution works fine on all three platforms, so removed the corresponding debug traces. commit 5d5012e33c6292280c03c21049a7737460c7f65b Author: Alan Garny '' Date: Sat Feb 18 18:08:02 2012 +1300 Our singleton solution was working fine on Windows and Linux, but not on Mac OS X. There was a problem of read/write conflicts using QSettings, but because the singleton issue 'doesn'\''t' apply to Mac OS X, we could get away with just doing what we were hoping to do in the first place, i.e. just return the address of the 'class'\''s' default instance. commit cf49739fc72531cd42e57379d98889ab7b3ac177 Author: Alan Garny '' Date: Sat Feb 18 18:01:19 2012 +1300 Addressed a visibility issue with Linux and Mac OS X. commit 930eb6aa3504b09f72ddef5e3ac29928f7156075 Author: Alan Garny '' Date: Sat Feb 18 17:25:35 2012 +1300 Argh, after all, it 'wasn'\''t' obsolete but very critical code '(if' we want to the CellML file manager to 'work)' which we removed 'earlier!' commit 30b1ef1b8ef9c060af58d9ea2ac18ee37849f9c7 Merge: 0d0ae88df 07834b891 Author: Alan Garny '' Date: Sat Feb 18 17:17:18 2012 +1300 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 0d0ae88df89ed9ed221e5cb242981b71d12a63ca Author: Alan Garny '' Date: Sat Feb 18 17:16:55 2012 +1300 Removed some obsolete code. commit 07834b891cfa9dc0adfcb9b9c194ee3b73b0ffd5 Author: Alan Garny '' Date: Sat Feb 18 17:01:48 2012 +1300 Argh, I removed the debugging code which is needed to test things on Linux and Mac OS 'X!' commit 34faf92a9c93377ccc38662b9ed9a557155433da Author: Alan Garny '' Date: Sat Feb 18 16:56:36 2012 +1300 Managed to get the sinleton approach to work on Windows '(and,' hopefully, also on Linux and Mac OS 'X!).' Also fixed a silly mistake when checking whether a file is a CellML file or not. commit ed4c06da64fe14fd23611da9c14a5b20000db48f Author: Alan Garny '' Date: Sat Feb 18 15:03:16 2012 +1300 An approach to the singleton issue which I thought would work, but 'doesn'\''t' in the end. Now, I am going to try via the ''\''registry'\''.' commit 36d6717a64b1f0554b1c31c41ce4407c0f142eef Author: Alan Garny '' Date: Sat Feb 18 14:02:56 2012 +1300 Created a QtSingleApplication-based class with the view of having it handling singletons '(such' as for the file manager and CellML file 'manager).' Indeed, on Windows and Linux, but not on Mac OS X, the instance of, say, the ''\''global'\''' file manager is different depending on the plugin from which 'it'\''s' being queried. Thinking of it, 'it'\''s' not that surprising since plugins are really independent from one another, so their memory space ought to be too. As for Mac OS X, the reason for which it works is probably due to the bundling approach used by Apple. commit 5e3ea88be18c6ca14e69a814a77a3a7836776214 Author: Alan Garny '' Date: Sat Feb 18 13:54:20 2012 +1300 A few missing header files as a result of some of the last few commits. commit f1368ed2fae7ba66d04faa9a1c4e765285bdab1e Author: Alan Garny '' Date: Sat Feb 18 10:23:01 2012 +1300 More cleaning up of some of our 'plugins'\''' global header file. commit 82e36d8e5e5346212ea27470ec87de6ced3ea291 Author: Alan Garny '' Date: Sat Feb 18 10:03:36 2012 +1300 Reversed some of our main.cpp code. I thought we 'didn'\''t' need to go the pointer route for the application and main window, but thinking more about it and even though it was working fine, it might take a tiny bit longer to quit which might be critical when needing to restart OpenCOR, so... commit 9a250721446523a5f2d7ac34c62a1e6a5d8d0063 Author: Alan Garny '' Date: Sat Feb 18 09:57:58 2012 +1300 Minor debugging fix for Mac OS X '(and' probably also valid for 'Linux).' commit e2a18b6f39d8195fa61d833857e8d0b11d4db945 Author: Alan Garny '' Date: Sat Feb 18 09:57:07 2012 +1300 Minor cleaning up of some of our global plugin header files. commit 979b628e12883efdb28319cdb48425a676fb1a17 Author: Alan Garny '' Date: Sat Feb 18 09:48:21 2012 +1300 Minor editing of our main CMake files. commit 20c3d8d408a687cdb7476b08e70504b124128e2a Author: Alan Garny '' Date: Fri Feb 17 19:08:59 2012 +1300 Some minor refactoring and cleaning up. Also some work towards our CellML file manager, but things are not quite working as expected since we need access to our ''\''global'\''' file manager and depending on where we query ''\''our'\''' global manager '(i.e.' from the Core plugin or the CellMLSupport 'plugin),' we get a different ''\''global'\''' file manager. Thinking of it, I guess 'it'\''s' ''\''normal'\''' since a plugin is completely independent from another. Still, this is an issue that needs to be addressed otherwise our CellML file manager 'won'\''t' work... commit 4af97e26e00cb3f171cd92aa72635200339b8811 Author: Alan Garny '' Date: Thu Feb 16 18:10:13 2012 +1300 Going back to working on the CellML file manager which a pre-requisite to having CellML files properly managed in OpenCOR. Also some cleaning up and memory leak fix. commit 3cbe9067e8ea61e83e39d4a9a5d429319507085c Author: Alan Garny '' Date: Thu Feb 16 16:35:31 2012 +1300 Fixed a typo. commit dd134b294691824376cde292fd292497aaa84d31 Author: Alan Garny '' Date: Thu Feb 16 15:41:57 2012 +1300 Improved our ''\''C'\''' parser as a result of adding some tests for our Computer plugin. commit 033549e345865cb66136f5ed306c3b69e2caebb9 Author: Alan Garny '' Date: Thu Feb 16 14:22:39 2012 +1300 Slight improvements to our ''\''C'\''' parser. commit 24dc91ae2dd588de54bc6623cd9d8ec047c876a7 Author: Alan Garny '' Date: Thu Feb 16 13:53:58 2012 +1300 Minor improvement to our ''\''C'\''' parser. commit 382939486853eb3bab3cfee2af176df07cb6a848 Author: Alan Garny '' Date: Thu Feb 16 13:03:38 2012 +1300 Minor cleaning up. commit 282716eea846500c28955f44721285b2ba30f5e4 Author: Alan Garny '' Date: Thu Feb 16 12:39:31 2012 +1300 Added a test for the Computer plugin. commit 1a855c4349a8e3c5aa91f5ca89913eb9e62bf2e4 Author: Alan Garny '' Date: Thu Feb 16 12:30:38 2012 +1300 Forgot that in a test, we might want to link to the plugin for which the test is 'done!' commit d3183de53324b72293f5dc0cf2cb8a2ef5817b60 Author: Alan Garny '' Date: Wed Feb 15 18:48:40 2012 +1300 Our test framework 'wasn'\''t' working on Windows '(now' that we ''\''test'\''' things a bit 'better).' commit 4cd7d31071b47a02df366ee0c334353c1aaf2f49 Author: Alan Garny '' Date: Wed Feb 15 18:08:31 2012 +1300 Fixed an issue '(which' I thought 'didn'\''t' 'exist)' with regards to the running of tests. commit 559106b7faf22c85f923d0d4a66c8014dacfdf55 Merge: 49138e2f2 1c9bdef6e Author: Alan Garny '' Date: Wed Feb 15 16:16:43 2012 +1300 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 49138e2f2c57f2fcbb840644635154bb061feb80 Author: Alan Garny '' Date: Wed Feb 15 06:03:42 2012 +1100 For each '(plugin)' test, we give the test the same dependencies as the plugin itself, as well as a dependency on QtTest. This allows us to properly test the plugin. commit 0a4bfc105eb8828b6ce086f4a1fc3b9b5a71f62e Author: Alan Garny '' Date: Wed Feb 15 05:33:24 2012 +1100 Minor improvement to our CellML Model runtime class. commit 6e07b3df74301f6a0c8f6e5aaa96ec6d2b46760c Author: Alan Garny '' Date: Wed Feb 15 05:07:10 2012 +1100 Removed some debugging traces. commit 669ec42bfca5c4fca92b3e5475c4328f2fc9a09e Author: Alan Garny '' Date: Wed Feb 15 05:02:31 2012 +1100 Minor improvement to our computer engine and scanner. commit 1ee0cbb34a64687f748f1f592a0563ed225b6e64 Author: Alan Garny '' Date: Wed Feb 15 04:52:42 2012 +1100 Can now fully test plugins within our testing framework on Mac OS X. commit bd46db184d452521dcc6c28d8c4aa4ea7f475862 Author: Alan Garny '' Date: Wed Feb 15 04:23:35 2012 +1100 Make sure that any third-party library that is to be used as part of a test is properly ''\''deployed'\''' in the build directory. commit 8f468baba5b5acae210cbe13bbae1ebe21c533fc Author: Alan Garny '' Date: Wed Feb 15 04:17:56 2012 +1100 Added a few comments to our common CMake file. commit e00762681a0c8666f50b8a64b170946a943dfeec Author: Alan Garny '' Date: Wed Feb 15 03:20:01 2012 +1100 Some files were not picked up by GitX for the last commit on Mac OS X, so... commit d96c69e6f92f67f81836dcecff56d540edfaf5d0 Author: Alan Garny '' Date: Wed Feb 15 03:18:14 2012 +1100 Renamed the CellML plugin to CellMLAPI plugin. This is to avoid, on Mac OS X, name conflicts between our CellML API plugin '(originally' 'libCellML.dylib)' and the core CellML shared library '(libcellml.dylib;' yes, different not the same cases, but that 'doesn'\''t' seem to matter on Mac OS 'X).' So, now, the CellML API plugin has a filename of libCellMLAPI.dylib on Mac OS X. commit 092e09a6ffcd066b70533141ba161f0121e560de Author: Alan Garny '' Date: Mon Feb 13 13:56:21 2012 +0100 Addressed an issue with loading plugins from a test on Mac OS X. commit 1c9bdef6ea037aa9532d4aeadd9f9460205790d1 Merge: 8a5f5b9a7 1668e5086 Author: Alan Garny '' Date: Mon Feb 13 11:50:30 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 8a5f5b9a7ab3f2b09207ffdb5e9b7f7ef987f055 Author: Alan Garny '' Date: Mon Feb 13 11:50:09 2012 +0100 Minor update to the developer documentation. commit 1668e50862d088bc21eb5cc6619c28c927f46eeb Author: Alan Garny '' Date: Sun Feb 12 14:30:08 2012 +0100 Got a bit carried away and removed the qt.conf file on Linux while I 'shouldn'\''t' have since 'it'\''s' crucial to get the help to work on a deployed version of OpenCOR. commit 9d22caa9053e4a49ac037d82df617350f2f69a99 Author: Alan Garny '' Date: Sun Feb 12 11:51:51 2012 +0000 Replaced our use of the uncool LD_LIBRARY_PATH with RPATH on Linux. commit 5540c40f399c99aeb1bee6ad0703dd3e0c3ecf37 Author: Alan Garny '' Date: Sun Feb 12 11:01:06 2012 +0000 Forgot to address the CRLF issue of the package shell script when I last renamed it. commit 3e976cdfdfc10fc4c03dc1d8850d3894b52de22b Author: Alan Garny '' Date: Sun Feb 12 03:49:45 2012 +0100 Minor editing. commit 89bd6c32e0cceda03041a923398a71efe3f7b5cd Author: Alan Garny '' Date: Sun Feb 12 03:25:00 2012 +0100 Minor editing of a comment. commit bbc9ccba962bfd1f8fc6c3d50c7d8b4ce7c81acf Author: Alan Garny '' Date: Sun Feb 12 03:19:03 2012 +0100 Minor refactoring of our main CMake files. commit ae3d5e16d15a26a427fecff393337b06655e7bf9 Author: Alan Garny '' Date: Sun Feb 12 01:48:42 2012 +0100 Minor improvement to our common CMake file. commit 23fd4fe8f84a6c3fed448dd0ae8c7edf051b6813 Author: Alan Garny '' Date: Sun Feb 12 00:26:41 2012 +0000 Got our latest test-related commit to work on Linux. commit eb5d503f60962b6d10a6d6f6f5a6ef0c11b0ea5f Author: Alan Garny '' Date: Sun Feb 12 00:26:20 2012 +0100 Improved our testing framework. Can now load a plugin from a test. commit 1bdeec9976530eb603046cb494cd55ade5898896 Author: Alan Garny '' Date: Sat Feb 11 23:18:16 2012 +0100 Minor fix to our 'exec()' utility function. Also improved the loading of plugins. commit a65714c0f47ad491d0c5f4d2bfe5c8501cf705fe Author: Alan Garny '' Date: Sat Feb 11 14:39:01 2012 +0100 Improved the tracking/retrieving of the current mode/view in the central widget. commit a232b8ca067a4b36bf0be577271e9fe4fe3ec9ad Author: Alan Garny '' Date: Sat Feb 11 12:19:11 2012 +0100 Improved our central widget '(it' was making an unnecessary call to 'updateGui()).' Slight ''\''fix'\''' to our testing of CellML files. commit 00dc708c5bc97b63917f64a78042a357ad56bdda Author: Alan Garny '' Date: Sat Feb 11 02:08:54 2012 +0100 Simplified our 'main()' functions. Also fixed another remaining problem with our main test program. commit 722157229d4850d25958bd6f9aed8cd29875b0c4 Author: Alan Garny '' Date: Sat Feb 11 00:53:58 2012 +0100 Fixed a small issue when trying to run the tests from a different Windows drive. commit d3c3fc5b327be4f0848d930892199af3cd710af1 Author: Alan Garny '' Date: Fri Feb 10 19:48:18 2012 +0100 Added an overall report to our test framework. commit e1aa7665d22c7e4277b3943d4e151d3a139b1705 Author: Alan Garny '' Date: Fri Feb 10 19:33:32 2012 +0100 Fixed the issue of getting the tests to run on Linux and Max OS X. commit c6754d0b5e1a92a5c00b98bda15b01ac94165f9a Author: Alan Garny '' Date: Fri Feb 10 19:11:32 2012 +0100 Oops, forgot to clean up my debugging traces. commit ec28f081e42595fecc546e79c928dc571e8bec6d Author: Alan Garny '' Date: Fri Feb 10 19:09:55 2012 +0100 Fixed an issue with our test framework on Linux and Mac OS X. commit a84151dad961e8d3d620a1766e13234eb3b4bb8c Author: Alan Garny '' Date: Fri Feb 10 18:56:44 2012 +0100 And keep fixing things... commit eb3e68eb55aaf98ecd450d6e6670f302c80dfccb Author: Alan Garny '' Date: Fri Feb 10 18:52:33 2012 +0100 Minor fix to our main CMakeLists.txt file. commit 07a17065a47fb7f64441748267d2545eb93d1ec0 Author: Alan Garny '' Date: Fri Feb 10 18:48:51 2012 +0100 Minor refactoring. commit 329422ff69b83da4341254c15249664194dec5c5 Author: Alan Garny '' Date: Fri Feb 10 18:44:53 2012 +0100 Argh, the CRLF issue... commit 5d174022d83b9b707f1e1ec3c2ca89d9a6a1c487 Author: Alan Garny '' Date: Fri Feb 10 18:43:16 2012 +0100 Updated the access mode of the maketests and runtests shell scripts '(for' Linux and Mac OS 'X).' commit 7188f35f2aa7eef637e389f87d5cf37b42b49834 Author: Alan Garny '' Date: Fri Feb 10 18:39:03 2012 +0100 Added a plugin-level testing framework '(based' on 'QTestLib)' and added a dummy test to the CellMLSupport plugin as an example. commit 1659685737168cb06f05a217609a2a7dbc8e491b Author: Alan Garny '' Date: Thu Feb 9 13:30:13 2012 +0100 Updated the 'developer'\''s' documentation. commit 1d33bcc7d3b425f9904077b18477e801d478de11 Author: Alan Garny '' Date: Wed Feb 8 15:57:31 2012 +0100 Updated the developer documentation '(as' a result of renaming our shell/batch 'scripts).' commit 08befc264f4203c0f6125c5055b5dadfcfd7990f Author: Alan Garny '' Date: Wed Feb 8 15:49:42 2012 +0100 Updated the name of our shell/batch scripts. commit 28e8a683c2a2ebe3341e86cc6570d78e679180ee Author: Alan Garny '' Date: Wed Feb 8 14:18:52 2012 +0100 Hide the preferences and check for updates menu items since they are not fully implemented. commit 9e0d1548f290d731ee1dfb765416f1e12ea7458c Author: Alan Garny '' Date: Wed Feb 8 13:38:47 2012 +0100 Fixed an issue with our ''\''C'\''' code generator '(how' did I miss that one, I 'don'\''t' 'know!?).' Also, fixed a small issue in our CellML simulation test code. commit d9a5320e6604479103d7b347a696e9436d2dd6b3 Author: Alan Garny '' Date: Wed Feb 8 11:41:29 2012 +0100 Some updates to the user documentation. commit 55cc0ea8a7c179c467511fa05e40cf8a67edeb32 Author: Alan Garny '' Date: Wed Feb 8 11:02:38 2012 +0100 Removed the Logo widget in the Core plugin since we can achieve the same result using a style-sheet. commit 22ebf5126e476188801a4689689d3805f92f4654 Author: Alan Garny '' Date: Wed Feb 8 10:36:33 2012 +0100 Created the skeleton of the RICORDOSupport plugin. commit 9bfaca1fda7d731ac915293e3a7e3cbdde18ef9c Author: Alan Garny '' Date: Tue Feb 7 18:36:41 2012 +0100 Oops, typo... which suprisingly to me 'didn'\''t' matter on Windows and Mac OS X, but did on Linux. commit 16c71ae36bc8877a6f4fe57b068357094ba5bede Author: Alan Garny '' Date: Tue Feb 7 18:29:53 2012 +0100 Created the skeleton of the CellMLAnnotation plugin. commit 34f5bc39ba3357d2819597e7ed6a877755759f57 Author: Alan Garny '' Date: Tue Feb 7 16:38:19 2012 +0100 Some minor refactoring of our CellMLSupport plugin. commit 8c1b5fa65790b42dcc976ea4d71f42a826bd725b Author: Alan Garny '' Date: Tue Feb 7 15:29:43 2012 +0100 Removed the ''\''factorOf'\''' and ''\''xor'\''' functions and, instead, re-implemented the use of ''\''%'\''' and ''\''^'\''' in our ''\''C'\''' compiler. Also some cleaning up. commit e624b55d3092f557bbe099f29981fc9c44fa0339 Author: Alan Garny '' Date: Tue Feb 7 14:15:32 2012 +0100 Minor fix to our ''\''C'\''' generator. Also simplified our testing of some CellML models. commit 23f9e821fdd806c7d953bad52c0c4cb892ea44fb Author: Alan Garny '' Date: Tue Feb 7 10:46:03 2012 +0100 Allow the testing of the Mitchell-Schaeffer 2003 model. commit dc0dd23a51e67e1a73c4cca2beed9fda163d005f Author: Alan Garny '' Date: Mon Feb 6 18:56:26 2012 +0100 Oops, forgot some N98-related traces... commit 3c85d78e334e5e232579c1af246d51895ac75831 Author: Alan Garny '' Date: Mon Feb 6 18:55:53 2012 +0100 Added support for piecewise statements in our C-like compiler. Allow the testing of a few other CellML models. Note, though, that Noble 1998 'doesn'\''t' 'work...!?' commit 02b07a53781a7557b86f8f0cae968dbb647b7f3d Author: Alan Garny '' Date: Mon Feb 6 15:39:06 2012 +0100 Avoid a couple of warnings on Mac OS X. commit 0ef2a6300b518ed2b2ad1ead5f898d6226b85f9e Author: Alan Garny '' Date: Mon Feb 6 15:32:10 2012 +0100 Minor editing. commit 41ff3b9b325590922246ed3cbc92e1d863fc045b Author: Alan Garny '' Date: Mon Feb 6 15:28:07 2012 +0100 Added support for the logical operators. commit a26ad02d158b3cb6371c54a8e22d06f768037d98 Author: Alan Garny '' Date: Mon Feb 6 11:31:26 2012 +0100 Some more minor editing. commit dd14dce1899a326c364a6b7ce9183e088e08b14b Author: Alan Garny '' Date: Mon Feb 6 11:29:55 2012 +0100 Minor editing. commit 52e4b16a00d581dc0eb53867f9e141dfe5cb33ba Merge: b2418fc48 7628c488e Author: Alan Garny '' Date: Mon Feb 6 09:34:06 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 7628c488e570313d7698eb7add97c6d873c726dd Author: Alan Garny '' Date: Sun Feb 5 19:50:54 2012 +0100 Forgot a header file for Linux. commit 7df427bfadb0d988c24ebdbf9614ffd9d9eca7d9 Author: Alan Garny '' Date: Sun Feb 5 19:35:01 2012 +0100 Added support for multi-parameter functions and, as a result, added support the multi-parameter gcd, lcm, max and min functions in our ''\''C'\''' compiler. Minor change to the XOr function '(the' scanner now looks for ''\''xor'\''' rather than ''\''xOr'\'').' commit fbda3e4dd7987759200f7cd9b9f2264a5a87f73c Author: Alan Garny '' Date: Sun Feb 5 19:23:32 2012 +0100 Fixed the CellML-based multi-parametr gcd and lcm functions which were wrong '(loops' for 'ever).' commit de975e77a99c5dd75e4353fd40a10ea67489b05f Author: Alan Garny '' Date: Sun Feb 5 13:16:28 2012 +0100 Added a few new computer mathematical functions '(multi' gcd, lcm, max and 'min).' commit 009d123dc376625a566bc72d6388b8a64dcb8f69 Author: Alan Garny '' Date: Sat Feb 4 19:02:21 2012 +0100 Minor editing. commit d8fc3d7632ce34110f63ca56685abb843328ee52 Author: Alan Garny '' Date: Sat Feb 4 18:52:52 2012 +0100 Added support for the ''\''xor'\''' function in our ''\''C'\''' compiler. commit 48857559246f3f0523819dac00779046954d7db8 Author: Alan Garny '' Date: Sat Feb 4 18:32:29 2012 +0100 Added support for the ''\''quotient'\''' and ''\''rem'\''' function to our ''\''C'\''' parser. commit a2f1faf399788a822417413ddf3588f59f565039 Author: Alan Garny '' Date: Sat Feb 4 18:05:28 2012 +0100 Removed support for the modulo '(%)' operator in our ''\''C'\''' parser since it requires converting a double into an int, etc. So too much hassle considering that the CellML API only requires modulo in a couple of cases: ''\''factorof'\''' and ''\''rem'\''.' So, we can create and call a function instead which are now doing for ''\''factorof'\''' '('\''rem'\''' is yet to be 'supported).' commit b2418fc48af875217004e9d9bcd712bf91be5b68 Author: Alan Garny '' Date: Fri Feb 3 18:49:46 2012 +0100 Ok, not quite comparable, but something like 3 times slower than COR. Still pretty good for a first test though... commit 05af2295e8d178fda78322077388b87ccd2caea8 Author: Alan Garny '' Date: Fri Feb 3 18:40:17 2012 +0100 Can now test the van der Pol 1928, Noble 1962 and Zhang 2000 models, and simulation times are comparable to COR '(nice!).' commit 687f0a2954e7e9d945a9373e62f7e7c4c50009a3 Author: Alan Garny '' Date: Fri Feb 3 18:39:13 2012 +0100 Fixed a typo. commit 58ae341c9354001541f75021693b7bababbd052e Author: Alan Garny '' Date: Fri Feb 3 16:04:45 2012 +0100 Ok, the last commit trying to fix the issue with QtWebKit 'wasn'\''t' correct, so... commit b7da04506fe6cb61414c37ef5aaa26904ad7ca7d Author: Alan Garny '' Date: Fri Feb 3 15:39:28 2012 +0100 Fixed an issue which came about after upgrading from Qt 4.7.4 to Qt 4.8.0. It would seem that QtWebKit is now more fussy '(or' maybe it was too relaxed before and is now doing what it should have been doing all 'along?)' when it comes to importing a CSS file from another CSS file. Also simplified some of our Help widget code '(as' a result of upgrading to Qt '4.8.0?).' commit 600cc765f0e9fa6bfd15155594aa083328d3aca6 Author: Alan Garny '' Date: Fri Feb 3 13:25:08 2012 +0100 Minor issue with our Linux packaging. QtWebKit is still causing problems though... i.e. the Help plugin still 'doesn'\''t' work as it used to be before upgrading to Qt 4.8.0 from Qt 4.7.4. 'Argh!' commit 00c05de7804934a89901edfa4ee48b860f0751ee Author: Alan Garny '' Date: Thu Feb 2 17:38:08 2012 +0100 Minor editing. commit d3b80983cdc3eaa9b4c46bd1e4674978daa124fc Author: Alan Garny '' Date: Thu Feb 2 16:52:08 2012 +0100 Working towards getting the help to work on all three platforms. Indeed, after switching to Qt 4.8, there is an issue with the help '(in' fact QtWebKit it would 'seem).' commit 18dd55fd18861f2429e29c88dc1209474f7014e9 Author: Alan Garny '' Date: Thu Feb 2 15:57:28 2012 +0100 Minor change which makes the selection of the first visible plugin '(in' the plugins 'window)' more sensible '(this' came about as a result of recategorising the Core and Help 'plugins).' commit ec0a25f8d4289525ab8efc2317e65756dc1b7a7c Author: Alan Garny '' Date: Thu Feb 2 15:36:56 2012 +0100 Minor editing. commit 34d4034ea34ce8e76b69dc668d4af81686e6e86b Author: Alan Garny '' Date: Thu Feb 2 15:03:40 2012 +0100 Minor refactoring. Also updated the category to which the Core and Help plugins belong. commit a9498dde68e2602422c080e8f674e77febe2ad6f Author: Alan Garny '' Date: Thu Feb 2 11:17:30 2012 +0100 Moved the Core and Help plugins under the ''\''misc[ellaneous]'\''' folder '(rather' than have them under the ''\''application'\''' 'folder).' commit 642f0d62ad0395ca24d270a13c72ad3b71afd72d Author: Alan Garny '' Date: Thu Feb 2 11:05:09 2012 +0100 Argh, 'qDebug()' again... commit 788a932c6dbf1a91c795e06dec478b417c4cb85b Author: Alan Garny '' Date: Thu Feb 2 10:53:10 2012 +0100 Make use of qPrintable whenever possible which is makes the code cleaner. ''\''Fixed'\''' a few remaining 'qDebug()' related issues. commit 384205271b41cc549d9427d8f9da55b52f83b62d Author: Alan Garny '' Date: Thu Feb 2 10:31:38 2012 +0100 Some minor refactoring '(to' avoid warnings in our use of 'qDebug()).' commit b3d3181d1c3aa5f8b40fbd95647b518f169e62cd Author: Alan Garny '' Date: Thu Feb 2 07:35:48 2012 +0100 Minor cleaning up of one of our CMake files. commit bd31958f1d259ada9e66e7d992cec33767692e59 Author: Alan Garny '' Date: Wed Feb 1 23:04:39 2012 +0100 Minor editing of one of our resource files. commit cc8403ec336b26c4d1fb1f03d2cda7b909e532bf Author: Alan Garny '' Date: Wed Feb 1 20:37:35 2012 +0100 Oops, minor oversight. commit 7f9ee7cf1177fe582978a111feec1da4f46b2a17 Author: Alan Garny '' Date: Wed Feb 1 20:31:13 2012 +0100 Moved the generation of the help files to the Help plugin CMake file. commit 9c96412a523b9819f93485d6842635a405fe4a8e Author: Alan Garny '' Date: Wed Feb 1 17:56:19 2012 +0100 Minor refactoring. commit a65261530e49687d8548d74ed2acca3fb3a28dd9 Author: Alan Garny '' Date: Wed Feb 1 16:31:37 2012 +0100 Updated the copyright year everywhere in the project. Update the French Qt translations. commit 2628ed59fe57b67fc98931721ab85a03020ba5ef Author: Alan Garny '' Date: Wed Feb 1 15:43:13 2012 +0100 Updated the 'developer'\''s' documentation to reflect our upgrading from Qt 4.7.4 to Qt 4.8.0. commit 12836326cf3c783957398aaaddaad1601e336336 Author: Alan Garny '' Date: Wed Feb 1 15:41:52 2012 +0100 Minor editing of our cmake/common.cmake file. commit 66287d18f7324fc2c0475e5d7f29205eb18188d8 Author: Alan Garny '' Date: Wed Feb 1 15:04:53 2012 +0100 Upgraded to Qt 4.8.0 '(from' Qt '4.7.4).' commit e054567debd0296aa8c68ff42892f2b8c7a0c650 Author: Alan Garny '' Date: Wed Feb 1 14:45:21 2012 +0100 Added some code to test the Zhang et al. 2000 Rabbit SAN model, but it fails integrating the model at the 'moment...!?' commit 3dddfdb639adf126082628050a2616e5a6c33ac3 Author: Alan Garny '' Date: Wed Feb 1 14:32:15 2012 +0100 Worked on our CellML Model Runtime class by adding some methods to retrieve the number of states, constants, etc. commit 76c91d63ea601eba85894f0624c3fe21196a8344 Author: Alan Garny '' Date: Wed Feb 1 13:09:28 2012 +0100 Added support for the CellML-related 'arbitrary_log()' ''\''C'\''' function. commit 3af5694181efa40fb2ad29a3e93441d16a5c1f5b Author: Alan Garny '' Date: Wed Feb 1 12:00:13 2012 +0100 Added support for the 'log()' C function. commit 2f1a2548b5f6d27ce3877b6f03d14e043dcba4a6 Author: Alan Garny '' Date: Wed Feb 1 11:44:45 2012 +0100 Argh, I was defining a CellML-related math function in a non-cross-platform way. Also modified our test2 LLVM function. commit 55e4c6258e94cd826324ccdc85809ba76c860223 Author: Alan Garny '' Date: Wed Feb 1 11:20:56 2012 +0100 Minor editing of a comment. commit 41caea99f472505e5c6ec6097a978e8c40a0d797 Author: Alan Garny '' Date: Wed Feb 1 10:53:53 2012 +0100 Improved the generation of LLVM assembly for a number '(there' was the issue of a number being NaN or '+/-Inf).' Also added ''\''proper'\''' for some mathematical functions '(e.g.' 'asinh()),' and added support for the factorial function. commit f339c6b048ba383fd85291a4af508b38671f39d7 Author: Alan Garny '' Date: Tue Jan 31 15:17:10 2012 +0100 Oops, I had overlooked a couple of files that needed updating after adding support for some C functions. commit 068bf7823a330f3422f0dd0a29afd8f588d330fd Author: Alan Garny '' Date: Tue Jan 31 15:05:12 2012 +0100 Added support for the 'ceil()' and 'floor()' C functions. commit 248f1a2fb1000a2e2d24da16737ced72dda67e27 Author: Alan Garny '' Date: Tue Jan 31 15:00:26 2012 +0100 Added support for the 'asin(),' 'acos(),' 'atan(),' 'asinh(),' 'acosh()' and 'atanh()' C functions. commit 9702d4ea289f05a2cac3d28b53ce150fc0cd0278 Author: Alan Garny '' Date: Tue Jan 31 14:53:25 2012 +0100 Added support for the 'sinh(),' 'cosh()' and 'tanh()' C functions. Some minor improvements to the equation simplifier '(I' had overlooked simplifications for 'fabs()' and 'exp()).' commit 6a1c0a39cd0c3229926e6f961bd29ff543d79656 Author: Alan Garny '' Date: Tue Jan 31 14:31:34 2012 +0100 Fixed a small issue with the updating of a CellML 'model'\''s' runtime. Also added support for the 'fabs()' C function. commit 8c2ed42204318210908e9464692589bd2e058f10 Author: Alan Garny '' Date: Tue Jan 31 13:00:12 2012 +0100 Minor improvement to the generated LLVM assembly code. commit 775e7da1742bb288c9680a5f8dc2c5ebaf349fc0 Author: Alan Garny '' Date: Mon Jan 30 18:43:53 2012 +0100 Fixed a silly problem of savings 'OpenCOR'\''s' settings upon restarting after having changed which plugin should be loaded. commit 112afb9173a0055921cdf5826c2d65bd1b037fe9 Author: Alan Garny '' Date: Mon Jan 30 17:44:36 2012 +0100 Simplified the scanner/parser for our ''\''C'\''' language. Indeed, we 'don'\''t' want/need to support certain operators. commit b949bdb9ba97cb5b18be655e71fbccf1ae088848 Author: Alan Garny '' Date: Mon Jan 30 14:50:24 2012 +0100 Some refactoring of code, especially for the CellML model runtime. commit 52d1da72aa93d5ca2fcb80f7c40d6a54131cf122 Author: Alan Garny '' Date: Mon Jan 30 13:32:03 2012 +0100 Improved 'CellmlModelRuntime::update()' based on the CellML API code '(CDA_CellMLIntegrationService::compileModelODE()' and 'CDA_CellMLIntegrationService::compileModelDAE()).' commit 971cf42deb342db2fb41cf25a4b0e7f35ee59021 Author: Alan Garny '' Date: Mon Jan 30 11:48:26 2012 +0100 Simplified the update of a CellML model runtime. commit f61e61f5f7803373d549da9acc9643ab07966faf Author: Alan Garny '' Date: Sat Jan 28 18:30:37 2012 +0100 Added some debugging code to our compiler '(since' we are not fully done with it yet, so 'it'\''s' good to be told 'what'\''s' missing, if 'anything).' commit c9ec127cb2f06c4c4fba750755a4661e361de299 Author: Alan Garny '' Date: Sat Jan 28 17:16:52 2012 +0100 Minor improvement to the compilation of a function. commit 39ff9cb5b7f92d9920ab7ee95a1da045818d479b Author: Alan Garny '' Date: Sat Jan 28 16:00:14 2012 +0100 Slight improvement to the simplification of an equation. commit f5eddd68011c346f05948267826a11c321738a96 Author: Alan Garny '' Date: Sat Jan 28 13:40:08 2012 +0100 Minor improvement to our plotting of the van der Pol model. commit 93c8754c5f456bc02c62ce76d8fc8ece38b8f406 Author: Alan Garny '' Date: Fri Jan 27 20:13:36 2012 +0100 Some work on the CellML model runtime. Also done with demoing the running of the van der Pol model. commit 1c45e4cb40d8289ab4b5fd7e601c0fe77ce780de Merge: aa176472b 2e04bb6ba Author: Alan Garny '' Date: Fri Jan 27 18:45:09 2012 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 2e04bb6bad4c96a173c51f0d62fa20062519fc99 Author: Alan Garny '' Date: Fri Jan 27 18:20:10 2012 +0100 Getting ready to compute a model, but only for demonstration purposes, so everything will be hard-coded. commit 0cb5c265c1918f4f5d6642e9eff877360ee3b9fc Author: Alan Garny '' Date: Fri Jan 27 17:53:37 2012 +0100 Fixed a small memory leak and bullet-proofed the code a bit. commit 59bcf16f7ecc7f946db7b2e244392aa7023175cd Author: Alan Garny '' Date: Fri Jan 27 17:16:33 2012 +0100 Some refactoring. Support for some one- and two-argument functions. Improved/better simplification of an equation. Improved parser and scanner. commit aa176472b944a14f54f48a6b0fca57e5c6b56152 Author: Alan Garny '' Date: Thu Jan 26 23:32:25 2012 +0100 Minor update to the developer documentation. commit 097a2f568ffc4b13706c21d50e54e5c106d1f91f Author: Alan Garny '' Date: Thu Jan 26 18:51:02 2012 +0100 Minor editing. commit 6840c44061ce7b5bf08a17b51f256aa0ec8bdade Author: Alan Garny '' Date: Thu Jan 26 18:47:43 2012 +0100 Some refactoring which will make our computer engine code cleaner and more maintainable. Also added another LLVM function test. commit 005809c86aae9cec32e951fa7690bf88baa43658 Author: Alan Garny '' Date: Thu Jan 26 17:18:10 2012 +0100 Some minor refactoring. commit d8cc3035cebff8b66a822261186090073ca79b81 Author: Alan Garny '' Date: Thu Jan 26 16:55:20 2012 +0100 Fixed yet another small problem with the retrieving of an assembly code index. Also added support for multiplications and divisions. commit 8eaac2dd4f14c204cd1b28e0c1935e55fd2aef39 Author: Alan Garny '' Date: Thu Jan 26 16:46:58 2012 +0100 Fixed a small problem with the retrieving of an assembly code index. Also added support for subtractions. commit 0dc20dda1a304dbf22a056d7a6894a060fa99f19 Author: Alan Garny '' Date: Thu Jan 26 15:56:59 2012 +0100 Can now generate LLVM assembly code for the addition operator. commit 237584d77988487e0b04bbd3cf70f4f0f52f8395 Author: Alan Garny '' Date: Thu Jan 26 14:21:46 2012 +0100 More work towards the compilation of an equation. commit e93cf64f51ce4cd92c14d6f42010a52909f41905 Author: Alan Garny '' Date: Thu Jan 26 10:47:29 2012 +0100 Re-added improved LLVM assembly code generation. Some cleaning up. commit a05ad4676a441a306c14999ab6ad0300b65a5842 Author: Alan Garny '' Date: Wed Jan 25 17:41:04 2012 +0100 Can now generate and run '(after' it has been 'parsed)' LLVM assembly code for the initialisation of parameters. commit ea34a2022660b55e069bce39a4a4742bc1ef3ede Author: Alan Garny '' Date: Wed Jan 25 16:21:07 2012 +0100 Some more support for the simplification of an equation. commit f3537a91dea4c017c200188a3294ea59c3203619 Author: Alan Garny '' Date: Wed Jan 25 16:15:31 2012 +0100 Further work on the simplification of an equation. commit bf2e12f2b5fdc058e3cb6899ce8b15f4b199f9d4 Author: Alan Garny '' Date: Wed Jan 25 15:59:29 2012 +0100 A bit more simplification of an equation. commit 04da2da0e0e811baa9f200d7dd5937b2120629b6 Author: Alan Garny '' Date: Wed Jan 25 15:54:26 2012 +0100 Started work on simplifying an equation. commit d10a03ea23f636e42a64f3e458b073fa82bdad6d Author: Alan Garny '' Date: Wed Jan 25 14:14:18 2012 +0100 Some minor cleaning up. commit 5773536a6d33e0c1f7e55a8575dce246fb31acfc Author: Alan Garny '' Date: Wed Jan 25 13:56:04 2012 +0100 Can now generate some LLVM assembly code for the return ''\''equation'\''' of a ''\''C'\''' function. commit 695e6f7012db4b089a8cca3189a43b4b0d71c256 Author: Alan Garny '' Date: Wed Jan 25 09:50:48 2012 +0100 It 'shouldn'\''t' be the 'parser'\''s' job to optimise the ''\''C'\''' code that it parses. commit 6d6fa10d206b8ce6e51fdea9623ff7644c78c7de Author: Alan Garny '' Date: Tue Jan 24 19:52:04 2012 +0100 And still more work on our parser. commit 5d7b22c19e34b2f90bd8dd63c95cd2ec3a2c476d Author: Alan Garny '' Date: Tue Jan 24 16:58:33 2012 +0100 Yet more work on our parser. commit 1a2f5427a772cbe36ea7ec98181589d932d4ffd1 Author: Alan Garny '' Date: Tue Jan 24 16:35:42 2012 +0100 Still more work on our parser. commit 7161441d7a6301c1577cd3534143456e2b296391 Author: Alan Garny '' Date: Tue Jan 24 16:23:52 2012 +0100 More work on our parser. commit bd30957c78580ab201833c133078092f154be063 Author: Alan Garny '' Date: Tue Jan 24 15:20:42 2012 +0100 Some more work on our generation of an internal representation of an equation. commit 63f729992f2402be7f195fce1117a2d64f4c50a5 Author: Alan Garny '' Date: Tue Jan 24 14:53:23 2012 +0100 Minor fix to our 'parseGenericExpression()' method in our Computer plugin. commit b87214d4924b2d4811cf086af98801b534aca77c Author: Alan Garny '' Date: Tue Jan 24 14:49:10 2012 +0100 Re-added our long-deleted 'ComputerScannerToken::symbolAsString()' method '(it'\''s' proving too useful for debugging 'purposes).' commit a07b5818c61de5a5634db576a9724cae5aa9cecb Author: Alan Garny '' Date: Tue Jan 24 14:14:56 2012 +0100 Reduced possible memory leaks in our parser. commit 8343faada5449c344732dd1a9a811f8edb63a2eb Author: Alan Garny '' Date: Tue Jan 24 14:08:17 2012 +0100 Fixed a couple of typos. commit 56a1e1379569c4fd539848ee23185cf22187400c Author: Alan Garny '' Date: Tue Jan 24 14:06:20 2012 +0100 More work on generating an internal representation of an equation. commit fc94c49b973c071cbd2be525a8e0f285fc3bd8b0 Author: Alan Garny '' Date: Tue Jan 24 09:59:16 2012 +0100 Working on our parser and having it generate an internal representation of an equation '(which' can then be used to generate some LLVM assembly 'code).' commit 50220682b84ffdf216177c8bae72d66e45bcf911 Author: Alan Garny '' Date: Mon Jan 23 18:04:11 2012 +0100 Minor fix to our parser '(we' were not parsing 'cond?trueStmt:falseStmt' 'properly).' commit 623e52a5bc810afd5cb7ebd9ef8c1349eedb7ebf Author: Alan Garny '' Date: Mon Jan 23 17:37:05 2012 +0100 Working towards generating our equation data structure. Also some cleaning up, and simplified the LLVM assembly code we generate '(indeed' the previous version might have a bit too specific and therefore too 'risky).' commit 2ad38dd4f7d04bc931e83ac5030cb0837a244b61 Author: Alan Garny '' Date: Mon Jan 23 15:16:29 2012 +0100 Support, in our Computer plugin, double and 'double*' function parameters. Some slight code improvements. commit 2f0c61e951e641327916cbf89fa4bbe98edf27a0 Author: Alan Garny '' Date: Mon Jan 23 13:59:32 2012 +0100 Made the CellML validation code slightly faster by disabling the retrieval of the line/column of a warning/error '(!!).' commit 9fb2ae700df323f7b32c1ef47455bf563ae7164a Author: Alan Garny '' Date: Mon Jan 23 13:41:54 2012 +0100 Minor cleaning up. Re-added a simple CellML test. commit 68684ba9c49101d481a9b0005338d180f87bba55 Author: Alan Garny '' Date: Fri Jan 20 18:29:26 2012 +0100 Updated some dependencies for our new SingleCellSimulation plugin '(the' need for those dependencies only shows up when trying OpenCOR on Mac OS 'X).' commit 0fa0a0160a2d1db7b14a7c6928ad6556232cd2d7 Author: Alan Garny '' Date: Fri Jan 20 18:19:17 2012 +0100 Updated our new SingleCellSimulation plugin. commit f8582e4085d1816ae6386865393ee96f4b8e7228 Author: Alan Garny '' Date: Sat Jan 21 06:04:56 2012 +1300 Renamed the CellMLSimulation folder to SingleCellSimulation. 'It'\''s' not a perfect name, but the idea is that using this plugin you can run any kind of single ''\''cell'\''' model, be it encoded in CellML or another format '(e.g.' SBML in the 'future).' commit 3cdac865670969c0b9f46a0eef527759464a069a Author: Alan Garny '' Date: Fri Jan 20 17:46:34 2012 +0100 Moved our former CoreSimulation plugin contents to our CellMLSimulation plugin. Also some minor editing here and there. commit c4f29659950262f95207657ddbdd9d7b63e187d6 Author: Alan Garny '' Date: Fri Jan 20 16:32:38 2012 +0100 Some '(heavy)' refactoring of our CentralWidget widget. commit 507e54ee80cdf4a992b97c93ba9518aa3f7358e9 Author: Alan Garny '' Date: Fri Jan 20 09:57:08 2012 +0100 Allow support for 1+ simulation views. commit 4749365559ad523f5d9916a7b57718509aea0272 Author: Alan Garny '' Date: Fri Jan 20 09:48:28 2012 +0100 Reverted some code for the addition of a view. Also stopped making the CoreSimulation plugin '*the*' simulation plugin. In the end, we may want several simulation plugins '(for' single ''\''cell'\''' simulation, 'multi-'\''cellular'\''' simulation, 'etc.)' commit 68dc073edbdb6985939f4b881e28279e60404aab Author: Alan Garny '' Date: Fri Jan 20 09:32:36 2012 +0100 Removed some test code from our Raw CellML view plugin. commit a16f82766d14822a9f8827a1b9ff4a1c8b944ddd Author: Alan Garny '' Date: Thu Jan 19 17:15:19 2012 +0100 Allowing a view to be associated to a particular MIME type. This is going to be useful for the simulation mode, since we want only one widget per MIME type '(as' opposed to as many widgets per view as there are opened 'files).' commit e7fee30ff6420bfd8836d12492550e363e2eaf69 Author: Alan Garny '' Date: Thu Jan 19 16:28:10 2012 +0100 Minor improvement to our central widget. commit 90d63f43cafc2dec27916ca09f67a64694978314 Author: Alan Garny '' Date: Thu Jan 19 16:12:28 2012 +0100 Improved our central widget '(Core' 'plugin)' and have our OpenCOR logo gets displayed within the contents widget, thus allowing the user to see what modes/views are available, even when no files are opened. commit 88cc95d9f2ca7efbb0182ce6b4880be6db4ceeeb Author: Alan Garny '' Date: Thu Jan 19 10:27:33 2012 +0100 Minor editing. commit 4a8d47e7ea9383053d654225a2189b33098fd0f6 Author: Alan Garny '' Date: Wed Jan 18 16:48:57 2012 +0100 Fixed a small problem with the resetting/initialisation of our parser. commit 82b433dcb682ecdbe3e171ad18bb043e24c48a66 Author: Alan Garny '' Date: Wed Jan 18 16:12:18 2012 +0100 Fixed a small problem in our parser. Testing our parser/scanner. commit daa8e0a724d851e6fcd7d88d31f4aaa46febf0f5 Author: Alan Garny '' Date: Wed Jan 18 14:27:01 2012 +0100 Some more work on the parser/scanner. commit 0728539cef371d572ee1102a08ccba9e23c620b4 Author: Alan Garny '' Date: Wed Jan 18 10:52:07 2012 +0100 Removed the support for ++ and -- in the parser. Surely, we 'don'\''t' want to have to deal with 'this...?!' commit 94e688de437d9603090c92d113586b9d9ef2e08c Author: Alan Garny '' Date: Wed Jan 18 10:26:36 2012 +0100 Some minor refactoring. commit aa4bd9f09442c908c6a3ed6a1d81fc49b97f8af3 Author: Alan Garny '' Date: Wed Jan 18 09:42:46 2012 +0100 Minor editing. commit ac3a5d018d71ec04a9d7925be472df288e4deca6 Author: Alan Garny '' Date: Tue Jan 17 18:29:55 2012 +0100 Some more refactoring. commit 5471280f72f333edaa2b308e3e1b0c98095c56f0 Author: Alan Garny '' Date: Tue Jan 17 18:21:51 2012 +0100 An insane commit which is the result of various refactorings and cleaning ups. commit c2b341f446f2071908fa450ee27dcb85ee5f8ceb Author: Alan Garny '' Date: Tue Jan 17 13:34:59 2012 +0100 Some more refactoring of our Computer plugin. commit 48cc2d3c6e884fb3d1264744783e3f421508b746 Author: Alan Garny '' Date: Tue Jan 17 11:43:48 2012 +0100 Some refactoring of our Computer plugin code. commit 476eef331ad6f6384475344f45b953c5b7c1d2f3 Author: Alan Garny '' Date: Tue Jan 17 10:06:38 2012 +0100 Minor refactoring. commit 28b45633d7c6c63c8d73ae49eb7c9b9cd987d010 Author: Alan Garny '' Date: Mon Jan 16 18:50:12 2012 +0100 Some further fixes to our parser. Note that there is a pending issue with 'parsePostfixExpression()' and parsing something like: 'pParam[0]' = 'pow(pParam[1],' 'pParam[2]+pParam[3]);' commit 0b954e7753554034246a14d355d449c5ea301ae7 Author: Alan Garny '' Date: Mon Jan 16 18:14:31 2012 +0100 Minor fix to our ''\''C'\''' parser. commit e8e69def2720681df0db105c89dd46a3df08b697 Author: Alan Garny '' Date: Mon Jan 16 16:42:30 2012 +0100 ''\''Fixed'\''' some EBNF grammars. commit 56e57fff01a52459b66c9add7594369722b910e0 Author: Alan Garny '' Date: Mon Jan 16 16:30:39 2012 +0100 Pretty much done with the parsing of a ''\''C'\''' function '(but' no processing as 'yet).' commit 88fd9aee9958d3f60a2f47fab570b7bb43b32a5b Author: Alan Garny '' Date: Mon Jan 16 13:17:13 2012 +0100 Improved our parseUnaryExpression method in the Computer plugin. commit 353215e220f135b08c3137eb1ea4515cc99881eb Author: Alan Garny '' Date: Mon Jan 16 11:59:31 2012 +0100 And still some more work on parsing a ''\''C'\''' equation. commit ad8a322136c4f5e14cab6555726d204439e9ca4a Author: Alan Garny '' Date: Mon Jan 16 10:05:11 2012 +0100 Yet some more work on parsing a ''\''C'\''' equation. commit 4913c2fde034f2886bba8c4d1efb4bf6208c948b Author: Alan Garny '' Date: Mon Jan 16 09:53:44 2012 +0100 Further work on parsing a ''\''C'\''' equation. commit c86672648866e527858bf7a874769f792fc74063 Author: Alan Garny '' Date: Sun Jan 15 18:58:25 2012 +0100 Some more work on parsing a ''\''C'\''' equation. commit 09da8d3c9cf6936734905c192ea75b6a2f31ff26 Author: Alan Garny '' Date: Sun Jan 15 00:32:48 2012 +0100 Added support for external functions and TBAA in our LLVM assembly code generation. commit e2f85b8a10de145229166d4833118e946928c18f Author: Alan Garny '' Date: Sun Jan 15 00:10:30 2012 +0100 Minor refactoring. commit af1ab576954384a5f80cc7bdeb7d8d6faea9b885 Author: Alan Garny '' Date: Sat Jan 14 10:50:05 2012 +0100 Some refactoring and improvement to our parsing of ''\''C'\''' model. commit 62d639048b4d20e19e83097f7e7cd581840e4322 Author: Alan Garny '' Date: Sat Jan 14 00:52:56 2012 +0100 Started work on parsing C mathematical equations. commit 9bb84824a4bf4d46a36d372b4a1a3735931dd721 Author: Alan Garny '' Date: Fri Jan 13 19:37:04 2012 +0100 Removed our performance test '(I' just wanted to have it in 'Git).' commit ef1a95bfeedc3d3f0e90f751a6c8b22b5f435384 Author: Alan Garny '' Date: Fri Jan 13 19:36:00 2012 +0100 Just wanted to convince myself that myself that 'JIT::runFunction()' has a big overhead and... indeed, it 'does!' Using our simple LLVM function, there is a ratio of '~1:900!' commit a54f67033aedeb1349248f6e5cc649a032f1c84e Author: Alan Garny '' Date: Fri Jan 13 19:21:44 2012 +0100 Improved our LLVM test function to check the use of external functions '(sin()' in our 'case)' and all works fine. This means that we, in effect, can run any CellML file on any processor supported by 'LLVM!' ':)' commit f19b8eabd8fa60910e7fbcba3eed0477213b652f Author: Alan Garny '' Date: Fri Jan 13 19:04:47 2012 +0100 Ok, still learning about LLVM and indeed... the previous commit about creating a function stub, etc. 'wasn'\''t' necessary. To use 'ExecutionEngine::getPointerToFunction()' and then casting things properly is sufficient. I guess I got confused by the fact that things 'didn'\''t' seem right when debugging using Qt Creator. However, since the same Qt Creator issue occurred with the previous commit, 'it'\''s' pretty obvious that the issue is with Qt Creator, not least because the debug traces '(using' 'qDebug())' report the right results, so... commit 20c9b80f996a8cfb94e7e4e45ed30014442a2f7f Author: Alan Garny '' Date: Fri Jan 13 18:08:02 2012 +0100 Before, we had to use 'JIT::runFunction()' to run an LLVM-based function. However, the overhead is too big, so now we create a stub for the function which allows us to make very quick calls. Note that the current code is not 100% right. Even though it seems to work, tracing it in Qt Creator results in the debugger getting a bit lost while everything works as expected using 'JIT::runFunction().' Hmm... commit ab657bc0705da4bce63aea10b165c2a7b57c5080 Author: Alan Garny '' Date: Fri Jan 13 10:31:25 2012 +0100 Testing the passing of an array of doubles to a LLVM-based function. commit 38c5058c2ef0ab36a7db4aeb7fbe9e6f5711d298 Author: Alan Garny '' Date: Fri Jan 13 09:50:51 2012 +0100 Minor editing to a comment. commit ae98b1efae620d44829b7e8306ef6bed4e7bb612 Author: Alan Garny '' Date: Fri Jan 13 00:18:05 2012 +0100 Removed the target data layout information that we generate as part of our LLVM assembly code. Indeed, 'it'\''s' not necessary, since that information is part of the LLVM JIT execution engine... commit 32e0df8c54fd041deb753589224bf197381780df Author: Alan Garny '' Date: Fri Jan 13 00:01:56 2012 +0100 Fixed an issue with running some IR code in a LLVM JIT execution engine. commit 0c057f613dd7732e88264275e58297820d715337 Author: Alan Garny '' Date: Thu Jan 12 20:38:13 2012 +0100 Minor improvement to our LLVM code. commit c2028be809bac31147643f0347ae2bb97462d26d Author: Alan Garny '' Date: Wed Jan 11 18:06:11 2012 +0100 Some more cleaning up. commit e86ac84f46ead6a68c534dcb05759b9cc3b829fa Author: Alan Garny '' Date: Wed Jan 11 17:51:08 2012 +0100 Some cleaning up. commit b6c972a092e3ec78f8c8f33a53810de947550caa Author: Alan Garny '' Date: Wed Jan 11 17:23:22 2012 +0100 Fixed the translation file for the Computer plugin '(which' got a bit messed up following the renaming from Compiler to 'Computer).' commit 2c08ab5bda0e11cd8366af0d4b40d687725f8da2 Author: Alan Garny '' Date: Wed Jan 11 17:12:02 2012 +0100 Renamed the Compiler plugin to Computer plugin. commit 2a69a100fec2a7ece8a98fb5c5a35bdf04d0c66e Author: Alan Garny '' Date: Wed Jan 11 16:55:38 2012 +0100 Renamed src/plugins/misc/Compiler to src/plugins/misc/Computer. commit e7bbc8028a36c559cad36bf116d267ba7f86fd10 Author: Alan Garny '' Date: Wed Jan 11 16:44:18 2012 +0100 Testing the execution of a ''\''C'\''' compiled function. commit f36b669d1c8f6a9ce1b2fd71a4eeaa370a004ab6 Author: Alan Garny '' Date: Wed Jan 11 15:51:37 2012 +0100 Improved the compilation of a ''\''C'\''' function by better handling errors. commit dc5da8729911dd9565eb532dc4a033c844f308fd Author: Alan Garny '' Date: Wed Jan 11 13:45:22 2012 +0100 Now generate some LLVM assembly code which is then parsed '(by' 'LLVM)' to generate some IR code. We do this rather than generating some IR code directly using the LLVM API '(which' clearly works, but is not as convenient to use as the LLVM assembly 'code).' commit 64fb2bb210cbcc93419e6d2929cf23c3b89319dd Author: Alan Garny '' Date: Tue Jan 10 21:34:47 2012 +0100 Minor editing. commit ddbe4793346a0ffcdb0c1a9d485a7205e0e8e4de Author: Alan Garny '' Date: Tue Jan 10 19:49:43 2012 +0100 Some more work on the generation of binary code using LLVM. commit 1f8912f9c4a52c894c0da7ad5ce524ac1b305d6c Author: Alan Garny '' Date: Tue Jan 10 17:28:21 2012 +0100 Started work on the generation of LLVM JIT code using. commit 9300058713634f637aea3be12f84b40a05fb7114 Author: Alan Garny '' Date: Tue Jan 10 16:35:27 2012 +0100 Can now parse/scan a number, be it an integer or a double. Slightly improved our scanner '(by' making it less error prone by replacing 'getChar()' with 'getNextChar(),' i.e. as we did when replacing 'getToken()' with 'getNextToken()).' commit cc3d0524eebe8a4d4ed035f421c27cc8714e221a Author: Alan Garny '' Date: Mon Jan 9 17:03:27 2012 +0100 Updated the Oxygen library from version 4.7.3 to version 4.7.97. commit df94ce1ee5c9d84795cb2981cbc25a569cdbb249 Author: Alan Garny '' Date: Mon Jan 9 15:54:08 2012 +0100 Our compiler can now parse parameters of a void/double function. commit 29bc9c788aef0ef989959634161a622edcea3adc Author: Alan Garny '' Date: Mon Jan 9 14:49:16 2012 +0100 Further work on our compiler parser. commit 04c03f64485ea134b562237b30788f656c674bf5 Author: Alan Garny '' Date: Mon Jan 9 14:28:36 2012 +0100 Refactored our compiler parser a bit, so that 'it'\''s' less error prone. commit 5871b6d839b41fb12c35d0896a7b9d74fae0e108 Author: Alan Garny '' Date: Mon Jan 9 13:51:57 2012 +0100 Minor editing of a comment. commit ea1a2bd01d9ce2102561dcf778b9b5aa69e68bff Author: Alan Garny '' Date: Mon Jan 9 13:49:05 2012 +0100 A bit of refactoring of our compiler code. commit 9ab67226dd2bd4f7a7694f7d2bed1a3e98c500ec Author: Alan Garny '' Date: Sat Jan 7 22:17:41 2012 +0100 CRLF to LF. commit c52884cc619ae1a193a70e43e118af6859270224 Author: Alan Garny '' Date: Sat Jan 7 22:10:42 2012 +0100 Updated LibQxt from version 0.6.1 to version 0.6.2. commit 6c49845c39e962162442653b47740c2ec669e42a Author: Alan Garny '' Date: Sat Jan 7 19:12:55 2012 +0100 Minor update to our reduced C grammar. commit 43ad8dd7f350761ccf75bf84e2414a3f37bf6d1e Author: Alan Garny '' Date: Sat Jan 7 19:07:51 2012 +0100 Further work on our compiler parser. commit 9806af12f5c5371bd8453cafc4e6963c2c260496 Author: Alan Garny '' Date: Fri Jan 6 18:15:29 2012 +0100 Some more work on our compiler parser. commit f766baa6945d9b52c3ddda691ca999146124cf74 Author: Alan Garny '' Date: Fri Jan 6 17:44:45 2012 +0100 Argh, another minor fix to our scanner. commit 5a90b9843eb04dbf1d9fa265babc2980fa197c05 Author: Alan Garny '' Date: Fri Jan 6 17:40:21 2012 +0100 Minor fix to our scanner. commit 490764ee35c8014415b81106bc779bee21f82b62 Author: Alan Garny '' Date: Fri Jan 6 17:37:40 2012 +0100 Some minor refactoring. Started work on the compiler parser now that we have a basic scanner. commit 6ea6f8797ecdc1275786c024c084c469ad7bdde2 Author: Alan Garny '' Date: Fri Jan 6 16:02:44 2012 +0100 Can now scan: void 'test()' '{}.' commit 43fd422a736a5485b5d49b7829a107b5f826ed09 Author: Alan Garny '' Date: Fri Jan 6 14:40:07 2012 +0100 Slight update to the developer documentation. commit c989fc989e5aa7fa5901d8172a9ea5ac5484944f Author: Alan Garny '' Date: Fri Jan 6 11:58:23 2012 +0100 Our compiler scanner can now recognise keywords. commit 3519e5c6f5125a3146ba69432b8091d3940d35e0 Author: Alan Garny '' Date: Fri Jan 6 10:39:57 2012 +0100 Further work on our compiler scanner. commit 4df2447da5afd2eb11c0452978086b29d6e3ce8e Author: Alan Garny '' Date: Mon Jan 2 22:27:15 2012 +0100 Yet more work on our Compiler plugin. commit fa654008d122b33026a509e1afb2f3c08b0fcc9a Author: Alan Garny '' Date: Mon Jan 2 14:51:41 2012 +0100 More work on our Compiler plugin. commit b4a2b821d8cc399467938941a928fc900e600cb3 Author: Alan Garny '' Date: Mon Jan 2 12:03:35 2012 +0100 Some more work on our Compiler plugin and some cleaning up of plugin-related code. commit 3f129ad503e317b60d0defed004170370fc3ecf7 Author: Alan Garny '' Date: Mon Jan 2 11:42:37 2012 +0100 Added a Compiler unit to the Compiler plugin. commit ad942eaa7bea23be5cf7dea3c3a39f11dcbffa0b Author: Alan Garny '' Date: Thu Dec 29 15:58:41 2011 +0100 Minor editing. commit 42b3b00bc48baec2f5e78ea69647512e13ba4e5b Author: Alan Garny '' Date: Mon Dec 26 10:56:15 2011 +0100 Minor build fix for our Compiler plugin. commit d087d38aab4ab4a15d537ef80d455e6d311f3210 Author: Alan Garny '' Date: Sun Dec 25 20:09:27 2011 +0100 Created a compiler plugin which will take some C-like code and generate some binary code on the fly using LLVM-JIT. Updated the type of some plugins. commit c51a5380f176d5f02db9ff9216d1da34dd9fa825 Author: Alan Garny '' Date: Fri Dec 23 10:48:56 2011 +0100 More work on our CellMLModelRuntime class. commit 583800768406d6f9dc09884a7ce6441537db35b7 Author: Alan Garny '' Date: Thu Dec 22 22:02:00 2011 +0100 Further work on our CellMLModelRuntime class. commit e6f92231394c151068acd8aab38d5508051799da Author: Alan Garny '' Date: Thu Dec 22 20:59:22 2011 +0100 Slight improvement to our CellML test code. commit 700a279686140bbb1c95bef3c3806a2fd69859c6 Author: Alan Garny '' Date: Thu Dec 22 20:35:25 2011 +0100 Further refactoring of our CellMLModelRuntime class. commit 9faaaac535213f10300a28edcc120fdd660e357c Author: Alan Garny '' Date: Thu Dec 22 17:56:18 2011 +0100 A bit of refactoring of our CellMLModelRuntime class. commit 700691a3dab79d8913f0b735bd606c8bf38c333d Author: Alan Garny '' Date: Thu Dec 22 14:08:35 2011 +0100 Overlooked something in our test overconstrained CellML model. commit 0735e2a28699bc31485c70b2cac136706a07181c Author: Alan Garny '' Date: Thu Dec 22 14:04:17 2011 +0100 Moved some CellML files to our new tests folder. commit 29999780baf0c8d6570985db540f480e5e21db4f Author: Alan Garny '' Date: Thu Dec 22 13:58:55 2011 +0100 Added some test CellML files. commit 689c0f66e613c908c5ee637c61b6b40611b5bf59 Author: Alan Garny '' Date: Tue Dec 20 16:21:53 2011 +0100 To call 'codeInformation->algebraicIndexCount()' is not the right way to determine whether a model is a ''\''simple'\''' ODE model or a DAE model. Instead, one should '(still' using an ODE code generator rather than a DAE code 'generator)' check whether some equations have been flagged as needing a Newton-Raphson evaluation. commit d7df42bf9e596c7a84bf11deeb5618bf67c8da57 Author: Alan Garny '' Date: Tue Dec 20 15:24:52 2011 +0100 Was using the wrong kind of code generator to determine whether a model is a ''\''simple'\''' ODE model or a DAE model. commit bd1d62ac57f8b77d21dd62dbd5b0548fcad017a3 Author: Alan Garny '' Date: Tue Dec 20 14:35:18 2011 +0100 Further work on our CellML runtime class. commit 008993a06be1452a8483f80b7c54ba8fe73c86f9 Author: Alan Garny '' Date: Tue Dec 20 10:16:05 2011 +0100 Improved the opening of a file '(before,' a new tab was always added at the end of the tabbar while no 'it'\''s' added after the current 'tab).' commit 3accf1f702726361ef218694d679b87a1c8f684d Author: Alan Garny '' Date: Mon Dec 19 17:50:23 2011 +0100 To retrieve what is causing a model to be overconstrained, underconstrained or unsuitably constrained is rather cumbersome using the CellML API, so giving up on it for now... ':(' commit 6f994ca5023dd4a5e0d2c97f1febe60079249836 Author: Alan Garny '' Date: Mon Dec 19 16:38:47 2011 +0100 Minor improvement to our work on generating a runtime for a CellML model. commit c8ae6da823ea2775c72df10cbd70d3b43161ec54 Author: Alan Garny '' Date: Mon Dec 19 16:05:17 2011 +0100 More work on generating a runtime for a CellML model. commit 1f526215b03b19c89a35cf8b2a0c2a47d8951d0c Author: Alan Garny '' Date: Mon Dec 19 14:00:52 2011 +0100 Working on generating a runtime for a CellML model. commit 8627e3628a277fa7ae0ccf93ef234f8a90a7e4d2 Author: Alan Garny '' Date: Mon Dec 19 13:39:00 2011 +0100 Minor editing. commit b1f80c56a67c8fa82d42cbcaff5e12b242df63b7 Author: Alan Garny '' Date: Mon Dec 19 13:33:51 2011 +0100 Some cleaning up in our CellMLSupport plugin. commit afc66e881cfcbde3cb17c8e59dce1af07c5cbf28 Author: Alan Garny '' Date: Mon Dec 19 11:23:03 2011 +0100 Reverted our attempt at using Clang '(alongside' 'LLVM).' Indeed, not only is it yet another big library, but I 'couldn'\''t' get the Clang interpreter example to compile within OpenCOR. Could it be that some Clang-related things are 'missing...?' What is certain is that I did everything in the same way as I did for LLVM and while it works fine for LLVM, it 'doesn'\''t' for 'Clang...?!' commit 7004eeddb88990b7a2aea2765281b7dee3b6f02d Author: Alan Garny '' Date: Fri Dec 16 16:40:11 2011 +0100 Another minor editing of our LLVM CMakeLists.txt file. commit e7a0522413217b8697b367a6977ec6a827dd0313 Author: Alan Garny '' Date: Fri Dec 16 16:38:19 2011 +0100 Minor editing of our LLVM CMakeLists.txt file. commit 1795c580bfd3f9251d83ac28e8075f58a125504b Author: Alan Garny '' Date: Fri Dec 16 14:57:54 2011 +0100 Added the various header files for Clang '(which' is part of our LLVM 'plugin).' commit 9e754b3a45363a07c51df841d8ece78c8944a803 Author: Alan Garny '' Date: Fri Dec 16 13:26:41 2011 +0100 Started work on adding Clang to our LLVM plugin. commit 537062c5b060908838b3e26e0c3942ff812c43ec Author: Alan Garny '' Date: Fri Dec 16 13:25:41 2011 +0100 Minor editing of our CMakeLists.txt file for our CellML plugin. commit 891e2b7979e4274df5f4ddd345890737f441974d Author: Alan Garny '' Date: Thu Dec 15 18:50:31 2011 +0100 Addressed a small issue of uint32_t not being defined on Linux. commit d3a9f480fae90d38ae6ff990d103e164a8ed2c01 Author: Alan Garny '' Date: Thu Dec 15 17:39:08 2011 +0100 Just keeping track of some CellML-based code that I am ''\''playing'\''' with. commit 1f0ee02ceb42826f03f64f9c4a6dce79e6b26424 Author: Alan Garny '' Date: Thu Dec 15 11:35:00 2011 +0100 Some further refactoring of our CellMLSupport plugin code. commit 7ff5b3dc31708977c2b50bda2c64c8ae79a11f82 Author: Alan Garny '' Date: Thu Dec 15 11:07:04 2011 +0100 Some refactoring of the CellMLSupport plugin code. commit 84a091ee1329383a8cd1188f1c7ccffd3e75b3ed Author: Alan Garny '' Date: Wed Dec 14 18:36:02 2011 +0100 Worked some more on our CellMLSupport plugin. Did some cleaning up too. commit c563aeb2fc99457715022589b42eb121f4a2431f Author: Alan Garny '' Date: Wed Dec 14 18:26:17 2011 +0100 Minor improvement to our Help plugin. commit c1cd912ebb050988b2ed44c9d057e99a5185fe4b Author: Alan Garny '' Date: Tue Dec 13 18:06:31 2011 +0100 Minor editing. commit 42700077ca868fc932da963e8498f3a754021c98 Author: Alan Garny '' Date: Tue Dec 13 15:14:49 2011 +0100 Minor editing of our test DAE model. commit 83f9ffec0e4631b4b674035d0bc9e745e389ebba Author: Alan Garny '' Date: Tue Dec 13 13:50:20 2011 +0100 Updated some of our test CellML models. commit ab1d3d2116319bbfeaca897148835e32486fe68d Author: Alan Garny '' Date: Tue Dec 13 13:48:23 2011 +0100 Slight update to the developer documentation. commit ef8ede0c252fc5fc289ff782ebbb37187d88770e Author: Alan Garny '' Date: Tue Dec 13 13:19:49 2011 +0100 Removed a ''\''fix'\''' which I thought was relevant, but is not '(see' 'https://tracker.physiomeproject.org/show_bug.cgi?id=3166).' commit 637830f6fcf5579d974c65cb57a3584945fbc6bf Author: Alan Garny '' Date: Tue Dec 13 11:49:51 2011 +0100 Oops, silly me, I committed modifications to some our test CellML files which were only there for temporary testing reasons. commit 56dd01c74588a5a8e24d60e003f832e33a97f935 Author: Alan Garny '' Date: Tue Dec 13 11:47:10 2011 +0100 Minor reformatting of some of our test CellML files. Improved the message of a CellML issue. Addressed an issue related to the full instantiation of a 'model'\''s' imports. commit dfcf218fe14ab4b47de79336276133b4decdfab3 Author: Alan Garny '' Date: Tue Dec 13 11:22:22 2011 +0100 Minor cleaning up of our test CellML files. commit 413f36f8b6f6e24922469cfa993f9e52e318772e Author: Alan Garny '' Date: Tue Dec 13 11:13:19 2011 +0100 Added a test CellML 1.1 model. commit 1a1aab257a0ba75886924c0370ad4572510666b3 Author: Alan Garny '' Date: Tue Dec 13 10:35:18 2011 +0100 Pretending that our CellML binaries already implement the cleaner C++ interface '(see' 'https://tracker.physiomeproject.org/show_bug.cgi?id=3108).' commit 9180123875373ee7c5d64e3cb41b5ef99d17f201 Author: Alan Garny '' Date: Mon Dec 12 18:01:20 2011 +0100 Starting work on generating a runtime for a CellML model. commit 2fe861f190e26771389ccea6243e437ab2e1b23a Author: Alan Garny '' Date: Mon Dec 12 17:22:44 2011 +0100 Improved our validation of a CellML model. commit a20e1f0ee8362e4cda0ee8523ad96556383979ad Author: Alan Garny '' Date: Mon Dec 12 15:32:45 2011 +0100 More work on our CellmlModel class '(in' our CellMLSupport 'plugin).' commit d52793883f5d981e1fc2cfcf5c84420747251229 Author: Alan Garny '' Date: Fri Dec 9 18:08:32 2011 +0100 Minor editing. commit 59f4d46f41a859f86e898ee2b24f345149a6b415 Author: Alan Garny '' Date: Fri Dec 9 17:58:54 2011 +0100 Some more CellMLSupport-related work. commit fe5906b3dfecea268c18c0a2ec3c6e48811bc589 Author: Alan Garny '' Date: Fri Dec 9 15:10:35 2011 +0100 Cleaned up ''\''our'\''' CCGS code since this is not going to be the way to go about generating binary code. commit 7c198a6f1831e82cbb4f2c9aa6793152e304bf78 Author: Alan Garny '' Date: Thu Dec 8 17:52:24 2011 +0100 Some further work on our CellMLSupport plugin. Can now generate some C code '(pretty' much copied/pasted the CellML2C CCGS test code. commit 7fb31f1c908192b4b33fd2a959d0c09ee5acdf26 Author: Alan Garny '' Date: Thu Dec 8 13:13:18 2011 +0100 Addressed the issue of a file being dropped on our Scintilla editor, resulting in its text/plain '(MIME)' version to be inserted rather than opened. commit 930aec958be268f55354809752f8c4fef2145afe Author: Alan Garny '' Date: Thu Dec 8 11:41:49 2011 +0100 Minor editing of a comment. commit 70ea6b3f2b9a10a22dd1adef1970263052c4c016 Author: Alan Garny '' Date: Thu Dec 8 09:45:50 2011 +0100 Minor refactoring of some our CellMLSupport plugin code. commit ec8efe7e727bf7347a4bd7bd3886d100fe10292e Author: Alan Garny '' Date: Wed Dec 7 16:00:46 2011 +0100 Manually addressed the issue of QKeySequence::PreviousChild not working properly on Windows/Linux, and of QKeySequence::Quit not doing what I would have expected on Windows. commit 6ffe74bd9482a2d2ce97118aa245cdf976f01161 Author: Alan Garny '' Date: Wed Dec 7 15:27:21 2011 +0100 Some straightforward refactoring with regards to setting up shortcut for actions. Also addressed the issue of only one shortcuts being available '(e.g.' Close = Ctrl+F4 and 'Ctrl+W):' I was using 'setShortcut(0' while I had to use 'setShortcuts()' instead. commit 144daa84dd960372dd1863a83ee88b55baa20280 Author: Alan Garny '' Date: Wed Dec 7 15:08:37 2011 +0100 Now use QKeySequence to set shortcuts. This means that Qt decides on which shortcut should be used based on the operating system being used. Some strange things though: according to the documentation the close shortcut could be either Ctrl+W or Ctrl+F4 on Windows, yet only the latter seems to be working. More worryingly, the shortcut for selecting the previous file '(QKeySequence::PreviousChild)' results in Ctrl+Shift+Backtab which means... 'Ctr+Tab?!' commit 9981c40559039d9cd44ed3dafa7ff3fb0d9c0f76 Author: Alan Garny '' Date: Wed Dec 7 13:54:45 2011 +0100 Minor update to the developer documentation. commit bef5fc00c382778733346c2ae9d3ee324015d5ce Author: Alan Garny '' Date: Wed Dec 7 13:43:47 2011 +0100 Improved our selection the previous/next file. commit 2c46677c61383920e5322e492986e8ccd92ac042 Author: Alan Garny '' Date: Wed Dec 7 13:26:54 2011 +0100 A couple of Mac OS X build issues. commit 4edeef3ee9aae7968f1564bf5223621181a88cd0 Author: Alan Garny '' Date: Wed Dec 7 13:12:07 2011 +0100 Allow to select the previous/next file from the keyboard. commit 1d8768e0a41b6afd4a980b8214eaeb1fdaf14136 Author: Alan Garny '' Date: Wed Dec 7 11:49:02 2011 +0100 Created a QScintillaSupport plugin that simplifies our use of QScintilla. commit 78d6d1efa0d1c694f061cf57449bd18e6e1cba8c Author: Alan Garny '' Date: Wed Dec 7 11:06:02 2011 +0100 Minor editing. commit 473c81bded710853e707ee597d2ecbc642020c76 Author: Alan Garny '' Date: Tue Dec 6 18:34:55 2011 +0100 Check that we are dealing with a CellML file before creating a new raw CellML view for a file. commit c2f9113f6482abcb1198f01afa777fbadf0bf856 Author: Alan Garny '' Date: Tue Dec 6 18:05:15 2011 +0100 Move the CellML MIME type from the CellML plugin to the CellMLSupport plugin since the latter now exists and is certainly more appropriate. Also fixed an issue of translation for the CellML MIME type '(when' trying to open a file and checking the available file 'types;' only the English version used to be available because the CellML plugin 'didn'\''t' support the internationalisation 'interface).' commit 610602d0002b1b15ff4807e3f5865d871ed02eed Author: Alan Garny '' Date: Tue Dec 6 16:51:01 2011 +0100 Minor editing. commit 37908152ecc92e877e7389f5e8955374025b0fcb Author: Alan Garny '' Date: Tue Dec 6 16:00:34 2011 +0100 Minor refactoring. commit 88b1c179598483e846296ed32e06b19ced6c7f1c Author: Alan Garny '' Date: Tue Dec 6 15:02:47 2011 +0100 Started work on a CellML model manager. commit f4060bcfef111d2f711a87b3e94beebdf3773e39 Author: Alan Garny '' Date: Tue Dec 6 14:17:06 2011 +0100 Oops, forgot a couple of 'dependencies!' commit 8e8e29075f73fb8436c72d65a340e973a74154ef Author: Alan Garny '' Date: Tue Dec 6 14:12:48 2011 +0100 Addressed a small Mac OS X problem with external dependencies in the RawCellMLView plugin. commit a542d6dfdf3ab560637f2d8cb16ea9ce4d22b561 Author: Alan Garny '' Date: Tue Dec 6 13:59:50 2011 +0100 Allow the use of FileManager as both a singleton and a normal class. commit cbae69f52006d3eacb0425d7b97d934c5decd127 Author: Alan Garny '' Date: Tue Dec 6 10:32:01 2011 +0100 Some straightforward refactoring of our CellMLModel plugin '(now' known as CellMLSupport 'plugin).' commit 38ae48080c4fa039534f707eca444e3baa6ed39d Author: Alan Garny '' Date: Mon Dec 5 18:31:05 2011 +0100 Working towards our CellMLModel plugin which will handle the loading, validation, execution, etc. of a CellML model. Also, some minor cleaning up in the process. commit 4a9b24c42512930a99b77583269fd461c9eb53d7 Author: Alan Garny '' Date: Mon Dec 5 16:55:09 2011 +0100 Removed the CellML, LLVM, CVODE and IDA tests, now that we know they work fine. commit bfad9e9591788cae12d25661a1102ebcbdccb6ee Author: Alan Garny '' Date: Mon Dec 5 16:23:35 2011 +0100 Some minor cleaning up. commit a1178f31b59ad78c0b32388e4d08d9bb4fbeb089 Author: Alan Garny '' Date: Fri Dec 2 21:12:56 2011 +0100 Addressed some focusing issues. commit 73b1f20572b4d342ca4645c77b7a515676d77f11 Author: Alan Garny '' Date: Fri Dec 2 19:47:25 2011 +0100 Fixed an issue with regards to shutting down OpenCOR. commit cbcfbfc5f6f41b3f0892a8bb7e3cdd655ea8bf03 Author: Alan Garny '' Date: Fri Dec 2 18:55:54 2011 +0100 Keep track of the current mode/view from one session to another. commit f52e464357a26767e923535e713716bbec520371 Author: Alan Garny '' Date: Fri Dec 2 16:10:35 2011 +0100 Addressed a linker warning on Windows. commit 90af25de269cc489f21bdac07b480d27a82a952a Author: Alan Garny '' Date: Fri Dec 2 15:45:43 2011 +0100 Upgraded LLVM from version 2.9 to version 3.0 '(nice' 'upgrade!).' While building a shared version of LLVM on Windows, I found out that a new version of MinGW got released on 18 November, so... had to update our MinGW dependencies too. commit a5e5c4ca463e1aff7a32fd5cbbe5adcb72b0f9f6 Author: Alan Garny '' Date: Fri Dec 2 10:14:49 2011 +0100 Updated the developer documentation. commit 7e05b65c945da92e1e9de5e643dd25675b3940d1 Author: Alan Garny '' Date: Thu Dec 1 18:57:39 2011 +0100 Fixed a warning issue on Mac OS X which was, in fact, the result of a bad copying/pasting in the CellML plugin CMake file. commit 0ce417bf04010aadf8d936f3beb1b8fa13ba8e68 Author: Alan Garny '' Date: Thu Dec 1 18:18:12 2011 +0100 Missing dependencies in our CellMLModel plugin. commit bb51b3030ac43a3e57ad32b31c577dbc7fdf2004 Author: Alan Garny '' Date: Thu Dec 1 18:13:45 2011 +0100 Some further work on our new CellMLModel plugin. commit 57ec93bb6bc5db084492e4438b0df74a44471e06 Author: Alan Garny '' Date: Thu Dec 1 17:44:43 2011 +0100 Starting work on a CellMLModel plugin '(to' handle CellML files using the CellML 'API).' commit 7478a98bb142af5492a056deb7fd36de89ac459b Author: Alan Garny '' Date: Thu Dec 1 16:53:56 2011 +0100 Minor improvements to our CoreSimulation plugin. commit 92ca7d61fbb084acb83967b0f6227bfe76875da3 Author: Alan Garny '' Date: Thu Dec 1 13:42:59 2011 +0100 Fixed a small issue of trying to retrieve a view for a given file while no file is present. commit 90b9abfa69d2b18dea243a9cff03537aaac9847c Author: Alan Garny '' Date: Thu Dec 1 13:11:12 2011 +0100 Fixed a small issue with CellML not being properly referenced in the CoreSimulation plugin. This 'wasn'\''t' an issue on Windows and Linux, but definitely one on Mac OS X. commit 0a9e1aceb0b92a7bc1678320a9226ded2fd21ed4 Author: Alan Garny '' Date: Wed Nov 30 18:25:36 2011 +0100 Had a first stab at our raw CellML view. commit a25d9687e9002176c369acda939bccb639fc48bb Author: Alan Garny '' Date: Wed Nov 30 16:50:20 2011 +0100 Fixed an issue with the QScintilla plugin '(methods' were not 'exported!)' and makes use of QScintilla for our raw view plugin. commit dddb3b561133fa37a6b5c3ad6bf2f61d5f9599e5 Author: Alan Garny '' Date: Wed Nov 30 12:10:24 2011 +0100 Cleaned up our CMake code for building a plugin. commit bbcb5405d593d4b7133daefa3cf014c607a222c8 Merge: 86e087fdd 09f7c17d0 Author: Alan Garny '' Date: Wed Nov 30 11:45:51 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 86e087fdd4c738eca798b0df71ddc013eded9a79 Author: Alan Garny '' Date: Wed Nov 30 11:44:36 2011 +0100 Added a test for IDA in our CoreSimulation plugin. commit 09f7c17d0e882f7f0c73ee9f67bb4f250f553f9e Author: Alan Garny '' Date: Tue Nov 29 20:24:05 2011 +0100 CRLF issues. commit acbf49e53a908dd4af47814f6aef4563f52c2b31 Author: Alan Garny '' Date: Tue Nov 29 19:48:48 2011 +0100 Added a test for CVODE in our CoreSimulation plugin. As a result, fixed a small issue with the generation of a DLL on Windows. commit d15876276b9f2f5d5635bd4796e45db0cfbc6592 Author: Alan Garny '' Date: Tue Nov 29 18:36:02 2011 +0100 Moved the CellML test code to the CoreSimulation plugin. commit 98d29c4e7a0902a45459226894fb908d52b43bc1 Author: Alan Garny '' Date: Tue Nov 29 18:21:21 2011 +0100 Some refactoring to test some third-party plugins from within the CoreSimulation plugin. commit 3900a848baf737d9e9b5b4c67c0adda0efcedefd Author: Alan Garny '' Date: Tue Nov 29 18:00:03 2011 +0100 Fixed a small issue with IDA '(which' generates a warning on Linux, and maybe Mac OS X though I 'can'\''t' test it at the 'moment).' commit 7af48a92df9dccd333953e554ad319cbce30bcac Author: Alan Garny '' Date: Tue Nov 29 17:48:22 2011 +0100 Avoid duplicated files between CVODE and IDA. commit 260632725f17a9af91de939e78c04a383dccf6f1 Author: Alan Garny '' Date: Tue Nov 29 17:30:16 2011 +0100 Some cleaning up '(argh!).' commit f68439456fb1106215b7c9768248dfe950d69f3a Author: Alan Garny '' Date: Tue Nov 29 17:25:41 2011 +0100 Not quite sure what happened here, but some IDA files got deleted while just before the last commit, so... commit e5d44f643280ade1b6225253a52f2893c27987f5 Author: Alan Garny '' Date: Tue Nov 29 17:12:53 2011 +0100 The IDA plugin should now be fully functional. Also, non-MOC headers 'shouldn'\''t' be included in the list of files that need checking for translations. commit aba7ee0cb913313350554d7abdf06619340481b8 Author: Alan Garny '' Date: Tue Nov 29 15:52:51 2011 +0100 Fixed a small issue with CVODE '(which' generates a warning on Linux, and maybe Mac OS X though I 'can'\''t' test it at the 'moment).' commit 692656fa11546cea67a4dbe88c77c00049a6c64b Author: Alan Garny '' Date: Tue Nov 29 15:22:52 2011 +0100 Argh, Git forgot a 'file!' commit 08ff56303a0cd208885441a29861b80f1a49142b Author: Alan Garny '' Date: Tue Nov 29 15:21:21 2011 +0100 The CVODE plugin should now be fully functional. commit ba8d4bdd3539c8cc7c78699cfb9808c00008c066 Author: Alan Garny '' Date: Tue Nov 29 11:32:45 2011 +0100 Slight update to 'Qwt'\''s' source code to avoid an annoying warning. commit 3c8724165cccafded8ead6f890d3d5ca9c04abea Author: Alan Garny '' Date: Tue Nov 29 11:00:55 2011 +0100 Added some basic code for our forthcoming CVODE and IDA plugins. commit 85efc92e4855cb6277551f71dd43cebecc801d2d Author: Alan Garny '' Date: Fri Nov 25 14:44:24 2011 +0100 Cleaned up our test LLVM code. Note that there is the issue of running OpenCOR '(from' outside Qt 'Creator)' on Windows. When doing so, an error message pops up when closing OpenCOR. Not to call 'llvm::InitializeNativeTarget();' results in the error message not being 'shown...!?' Now, what is strange is that 'llvm::InitializeNativeTarget();' should normally be called, 'so...?!' commit 52e52e121c6e07f05689d6ff29fb0245d4b46605 Author: Alan Garny '' Date: Mon Nov 21 15:48:13 2011 +0100 Updated QScintilla to version 2.6 from version 2.5.1. commit f076c38c779181ea1ee132f378bc5257643573b7 Author: Alan Garny '' Date: Thu Nov 17 13:38:02 2011 +0100 Some more minor editing. commit 43f6418aa80c8f5b6dd1798a800c68f7d91b858e Author: Alan Garny '' Date: Thu Nov 17 13:34:56 2011 +0100 Minor editing. commit 458faaf7706fb2a28a00a9b2f0784598d25f31ed Author: Alan Garny '' Date: Tue Nov 15 18:33:49 2011 +0100 Minor editing of our LLVM readme file. commit ae518709877ec6f8db99cf4810fdc5e4a4a5a74b Author: Alan Garny '' Date: Tue Nov 15 17:36:03 2011 +0100 Improved the restarting of OpenCOR. commit 6871d4b3810aa06da85037bccfb4fdaef64b1a5b Author: Alan Garny '' Date: Tue Nov 15 17:08:10 2011 +0100 Minor editing of a comment. commit d64fe3bfc12aa2c9c345d670417adf423c94ca1f Author: Alan Garny '' Date: Tue Nov 15 16:47:41 2011 +0100 Fixed an issue with the loading of plugins '(their' loading state 'wasn'\''t' properly 'stored/retrieved).' commit f6e27403ff54f02e2e2e2d2a8b3e0c83df9a0265 Author: Alan Garny '' Date: Tue Nov 15 13:25:47 2011 +0100 Minor update to our LLVM test code. commit 1c94f3ea05239aa676edb19e2530cf38f5a2afed Author: Alan Garny '' Date: Tue Nov 15 11:44:55 2011 +0100 Cleaned up some of our CMake code. commit faf4175144e40205a99246a43388ec38691aff22 Author: Alan Garny '' Date: Tue Nov 15 09:28:43 2011 +0100 Minor editing of some of our CMake files. commit 06d95f66d88cb49910f1d1e3aa642346b29c7705 Author: Alan Garny '' Date: Mon Nov 14 19:03:19 2011 +0100 Slight refactoring of some of our CMake code. commit 4462da848f99c930c7ab549fbd9a177109851bb2 Author: Alan Garny '' Date: Mon Nov 14 18:02:14 2011 +0100 Finally got LLVM to work on 'Windows!' 'Hurray!' ':)' All along, I wrongly assumed that there was a problem with the way I was generating a shared version of LLVM. In fact, the problem was that I was using DLL Export Viewer '(http://www.nirsoft.net/utils/dll_export_viewer.html)' to check that functions were properly exported and since DLL Export Viewer reported no exported functions, I kept assuming that something had gone wrong. Someone suggested that I use PEInfo '(http://www.pazera-software.com/products/peinfo/)' and after doing so, I realised that the functions were properly exported and that the problem was that there was a broken dependency '(on' libpthread-2.dll which is part of the official MinGW, but not the version that is shipped with 'Qt...!).' So, by manually copying that file over, now 'everything'\''s' 'fine!' ':)' commit 5bcd6985537dcb8ad7b4325f669588178de26aef Author: Alan Garny '' Date: Thu Nov 10 20:01:57 2011 +0100 Cleaning up of code. commit dcb17f3830a9cd8ae4efd49014c2d3fa84db215f Author: Alan Garny '' Date: Thu Nov 10 19:06:25 2011 +0100 Improved the plugins window by allowing to show or not selectable plugins only. Also cleaned up some unused code. commit 35592049088286f1214952fe5cc163a5278112d9 Author: Alan Garny '' Date: Thu Nov 10 11:16:15 2011 +0100 Minor update to our LLVM readme file. commit c59b1f9023616c216b7a8e9942e94956aec89a30 Author: Alan Garny '' Date: Wed Nov 9 17:46:23 2011 +0100 Minor improvement to our instructions for building LLVM as a shared library. commit 7fabcd026a85235ed5e208841a29e409599c8fdc Author: Alan Garny '' Date: Wed Nov 9 17:37:27 2011 +0100 Updated a comment. commit 7ad07cb058a6946c3bc891a211e4515b25b8498d Author: Alan Garny '' Date: Wed Nov 9 17:31:06 2011 +0100 By default, LLVM is built with embedded libstdc++ for Win32 DLL, so... commit 421828ae61edb27dda33a8c249e7904326b5a706 Author: Alan Garny '' Date: Wed Nov 9 15:11:11 2011 +0100 Minor update to our 'LLVM'\''s' README file. commit 9dea8f0a733e04a75faa8ac1426387080f173ed7 Author: Alan Garny '' Date: Wed Nov 9 14:03:59 2011 +0100 Removed some CellML binary files which 'don'\''t' appear to be required. Modified our CellML test code so we can an information message when CIS was able to compile a model. commit 3bf2d771ea9e90922793864fbab1f84ae5d78b0c Author: Alan Garny '' Date: Wed Nov 9 13:46:19 2011 +0100 Minor update to the README.txt file for building LLVM on Windows. Note that the DLL that gets generated 'doesn'\''t' include any 'symbol...!?' So, could it be the reason it 'doesn'\''t' work on 'Windows...?' '(Could,' because I have found another LLVM DLL '(https://github.com/downloads/JakobOvrum/SDC/llvm-2.9-Win32-DLL.rar)' that 'doesn'\''t' contain any symbol either, 'so...)' commit e21a5f3385801f049a9f35a2e84e303da9e675ad Author: Alan Garny '' Date: Wed Nov 9 10:52:48 2011 +0100 Minor cleaning up of our CMake files. commit b49c0b9c35e23bd3d48b2ce69a9e3cecee2266ab Author: Alan Garny '' Date: Wed Nov 9 10:49:10 2011 +0100 Got LLVM to work on Mac OS X. commit 675a18c40bebcda780748c67117bc12aacca230d Author: Alan Garny '' Date: Tue Nov 8 18:49:08 2011 +0100 Minor editing of the LLVM test code. Note: it works on Linux '(both' x86 and 'x64)!' So, clearly something wrong with my handling of the LLVM binary on Windows and Mac OS X which is ''\''good'\'',' since it shows that the approach I have taken works. Just need to get things right on Windows and Mac OS X. commit ce20c2d9f5ae87541e1ef4abe58ee965562d79ab Author: Alan Garny '' Date: Tue Nov 8 17:19:19 2011 +0100 Minor update to the developer documentation. commit d5a9ba532c42004b82c1e405d51bb80a1c66b93e Author: Alan Garny '' Date: Tue Nov 8 16:29:50 2011 +0100 Minor refactoring of the LLVM test code. commit cdefcba8bdbcbf04e83368fd56985ee84ba9c21b Author: Alan Garny '' Date: Tue Nov 8 14:18:23 2011 +0100 Resumed our work on supporting LLVM by trying the example that comes with LLVM in the CoreSimulation plugin. However, the CoreSimulation plugin 'doesn'\''t' get loaded, so there is something wrong somewhere... commit f6a65b3f9b0cb5e13901aab6c0f5e2d92ee184f4 Author: Alan Garny '' Date: Tue Nov 8 14:16:33 2011 +0100 Fixed a CMake issue following some cleaning up of our CMake files. commit 03938fa0acf3e4db32a8aae564ba05b1dcb7a2fe Author: Alan Garny '' Date: Tue Nov 8 13:13:44 2011 +0100 Some more cleaning up of our CMake files. commit 3b2fb30fd9cc166e8a7ae7a894fd48876843c429 Author: Alan Garny '' Date: Tue Nov 8 13:03:50 2011 +0100 Some cleaning up of our CMake files. commit b4860134e99abca839797727d025896be3871db0 Author: Alan Garny '' Date: Tue Nov 8 12:17:53 2011 +0100 Minor changes to the developer documentation. commit aa11d075b72cabab16e0827401344af6972985de Author: Alan Garny '' Date: Mon Nov 7 17:14:42 2011 +0100 Git remembered about some files that used to be ignored but which should now be added. commit 473a44ec1a01ce33755bbb576b574a9a7f3ecf83 Author: Alan Garny '' Date: Mon Nov 7 17:10:55 2011 +0100 Minor editing. commit 41a9aad3b0211d75086d8d7c541fae7c4e321b6f Author: Alan Garny '' Date: Mon Nov 7 16:55:33 2011 +0100 A few more LLVM-related files that were not properly accounted for by Git. commit 383f285b298024ff56c18a56992156f5d02ca393 Author: Alan Garny '' Date: Tue Nov 8 04:52:39 2011 +1300 Some more work on supporting LLVM. We do as for the CellML plugin, i.e. have binaries '(shared' 'libraries)' which we can target using the plugin. It needs proper testing '(and,' most likely, 'fixing)' now... commit fb84481a508cd60a65a742ad0318820d31cf4772 Author: Alan Garny '' Date: Mon Nov 7 16:46:19 2011 +0100 Updated the developer documentation. commit 0c153c7d3146bc66051380e71179261caa89a74d Author: Alan Garny '' Date: Fri Nov 4 19:53:15 2011 +0100 Minor editing. commit 6c5dbb8f6c671777bdbdf48c26c6377b98c3284e Author: Alan Garny '' Date: Fri Nov 4 19:40:57 2011 +0100 Minor refactoring for the CMake code to add a plugin. commit 841bda14f28a8e89e6ffce0e2312ca1cb6c098fd Author: Alan Garny '' Date: Fri Nov 4 19:25:13 2011 +0100 Minor editing. commit dc0ef032c35b01a47d195f529a9b3d9611be0013 Author: Alan Garny '' Date: Fri Nov 4 18:03:43 2011 +0100 Minor update to our LLVM readme file '(for' some reasons, MinSizeRel generates bigger files than Release on Linux and slightly bigger on Mac OS X, 'so...?!).' commit 6039aa3c212f41cdba69e951a7c24d6817cdabfc Author: Alan Garny '' Date: Fri Nov 4 16:43:18 2011 +0100 Cleaned up the LLVM structure, since we are now aiming at using the binaries rather than compiling everything everytime which is rather time consuming for LLVM and is not that straightforward '(i.e.' not as easy as it was to include QJson for 'example).' commit bb28f03541613b5eca705eacedb40545d6b544a9 Author: Alan Garny '' Date: Fri Nov 4 16:08:11 2011 +0100 Minor update to our Batch/Shell files/scripts, so that we can call makeproj in a similar way to make, e.g. '"makeproj' -j '1",' rather than '"makeproj' '1"' which then resulted in '"make' -j '1"' being called. commit 986d56132758089f08272587fc80a08088d86276 Author: Alan Garny '' Date: Sat Nov 5 03:18:03 2011 +1300 Removed the Nanojit files '(since' we are very unlikely to ever use 'Nanojit;' LLVM seems more like the way to go than 'Nanojit!).' commit b705e7bbcc39b844653f58e55e60271abdaaeb7c Author: Alan Garny '' Date: Fri Nov 4 15:10:58 2011 +0100 Some more work on our LLVM support. Note though that I am wondering whether this is the best way to go about it. Indeed, it might be better/easier to just use the 'binaries?!...' I.e. as was done for the CellML API... commit c191c38cb6ef250a0fbb7a38da1cac544f0acc6e Author: Alan Garny '' Date: Fri Nov 4 12:58:58 2011 +0100 We 'don'\''t' want to use the LLVM namespace directly, so prepended the LLVM functions/types/etc. commit a61c4a55d015d88b3b7c50375d290b3c34a0e388 Author: Alan Garny '' Date: Fri Nov 4 11:50:12 2011 +0100 Removed our dependency on Nanojit. commit de32df7e797b6b857e6422f564a0bd1be0b5757b Author: Alan Garny '' Date: Fri Nov 4 11:42:29 2011 +0100 Some more work on supporting LLVM. commit 5b06c232ee8a6639bab3e94e5c0a49d67d3a709f Author: Alan Garny '' Date: Thu Nov 3 19:19:42 2011 +0100 A few more files that Git 'didn'\''t' include in the previous commit. Note: OpenCOR 'doesn'\''t' build at the moment. Still need to work on LLVM... commit b56248ba298a336c0a157d82be1ebc78b2aee589 Author: Alan Garny '' Date: Thu Nov 3 19:16:52 2011 +0100 Still working on supporting the JIT compilation side of LLVM. commit 8725e4cc381a79a2539112cfb6e57396b42f750f Author: Alan Garny '' Date: Thu Nov 3 18:52:31 2011 +0100 Minor updqte to our common CMake file. commit 0f19dadc3d54eb8ad71489e80965c38cc269b9d9 Author: Alan Garny '' Date: Thu Nov 3 17:23:22 2011 +0100 Minor update to the developer documentation. commit 57b50edc5deb166d008043e58a6f4f657738a919 Author: Alan Garny '' Date: Thu Nov 3 16:19:08 2011 +0100 Thinking about possible conflicts of filenames with external libraries or, more simply, trying to respect what third-party developers tried to achieve, which in the case of QScintilla means including header files in the Qsci folder, hence we remove it from our list of ''\''supported'\''' folders. commit 0d344faec6a5eac703020d81404a583153e54514 Author: Alan Garny '' Date: Thu Nov 3 16:02:01 2011 +0100 Cleaned up some Nanojit code in the CoreSimulation plugin. commit a0f011e1d6d727051101a2633dd4002abdd5eb7d Author: Alan Garny '' Date: Thu Nov 3 15:44:39 2011 +0100 Starting work on supporting the JIT compilation side of LLVM '(as' a possible replacement for 'NanoJIT).' commit 22fd017c71bc3baf3c109c2a30a5fcb72cca88d3 Author: Alan Garny '' Date: Tue Oct 18 22:34:04 2011 +0200 Added a few things to our Nanojit plugin. commit c2825990c465f8024a6954240336acea0f1227c4 Author: Alan Garny '' Date: Tue Oct 18 21:25:07 2011 +0200 Slight update to the developer documentation. commit f57c3faca1977282b9cdaec51e1d4427c8cbcd8f Author: Alan Garny '' Date: Mon Oct 17 23:59:19 2011 +0200 Hmm, 'it'\''s' not the CellML plugin which should require our new Nanojit plugin, but the CoreSimulation plugin, so... commit 8dfa1d85449719c1442560c2786d8d1ea917cd10 Author: Alan Garny '' Date: Mon Oct 17 23:52:40 2011 +0200 Minor cleaning up for our Nanojit plugin. commit bf6c5bd48b3291f560aab48dc638410cab16ec56 Author: Alan Garny '' Date: Mon Oct 17 23:51:59 2011 +0200 Added a couple of header files which I had overlooked for our Nanojit plugin. commit dcfe9436696ab7fcfce6627072e68593e0236bf9 Author: Alan Garny '' Date: Mon Oct 17 23:41:15 2011 +0200 Added header files to the Nanojit plugin so that other plugins can really make use of Nanojit. Also added the x64 files which I had completely 'overlooked!' commit 8d11db95cdb3d9d430386e571f5fd1441cb929b9 Author: Alan Garny '' Date: Mon Oct 17 23:35:17 2011 +0200 Made the CellML plugin depend from our new Nanojit plugin. Fixed a minor issue with our new Nanojit plugin. Updated the developer documentation. commit ad27ae2d2730d424180e5f729359bd9afaf2cd3d Author: Alan Garny '' Date: Mon Oct 17 23:14:07 2011 +0200 Oops, forgot to update the main CMakeLists.txt. commit 1cb4928b871fefbf5b4dff86cfd1d42dceb063f5 Author: Alan Garny '' Date: Mon Oct 17 23:13:22 2011 +0200 Added a plugin to get access to Nanojit. commit 83a96e123cb66066e06a868ce1aa7f53fb6b4426 Merge: 8394eb05b e080bfdec Author: Alan Garny '' Date: Mon Oct 17 21:22:22 2011 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 8394eb05bf4b4465ae178b3cdd7b52a6efa4f510 Author: Alan Garny '' Date: Mon Oct 17 21:21:43 2011 +0200 Slight improvement to the CellML plugin. commit e080bfdec2173e9c6666b01680773db649e459d2 Author: Alan Garny '' Date: Sat Oct 15 15:19:05 2011 +1300 Some more minor edits '(for' 'cleanproj[.bat]' this time 'round).' commit 8a094cc89b3504c87d2df44be52a029976cf164b Author: Alan Garny '' Date: Sat Oct 15 15:16:10 2011 +1300 Minor editing of runproj.bat. commit 39b51030e4588ca47404b45f74554976f091de3f Author: Alan Garny '' Date: Fri Oct 14 16:59:26 2011 +1300 Minor update to the user and developer documentations. commit e91051e349b391ce35f1dc0795d2e67912ca10f0 Author: Alan Garny '' Date: Thu Oct 13 19:03:19 2011 +1300 Finally done with the adding of separators to make it easier to read 'OpenCOR'\''s' source 'code!' commit 6dd7f432614eb4f7590a62f233d8e92fb3ecd4da Author: Alan Garny '' Date: Thu Oct 13 18:42:08 2011 +1300 Yup, yet more adding of separators to make it easier to read 'OpenCOR'\''s' source code... commit 89b079ab31a37232388f3848d1120883a9a83343 Author: Alan Garny '' Date: Thu Oct 13 18:34:41 2011 +1300 And some more adding of separators to make it easier to read 'OpenCOR'\''s' source code. commit 3c730fae7784087aa6d7be4a05ba2e929ba7c27c Author: Alan Garny '' Date: Thu Oct 13 18:25:55 2011 +1300 Some more adding of separators to make it easier to read 'OpenCOR'\''s' source code. commit cf7bca491d0b0e3ece8c6be6c026172d99cad0e9 Author: Alan Garny '' Date: Thu Oct 13 18:17:44 2011 +1300 Added some separators to make it easier to read 'OpenCOR'\''s' third-party 'plugins'\''' source code. commit c00162e63ffc576578cc0a57dca04e3057ceab12 Author: Alan Garny '' Date: Thu Oct 13 18:09:26 2011 +1300 Started adding some separators to make it easier to read 'OpenCOR'\''s' source code. commit 774e2f85e8d5cacce94379808e733637e29d4b02 Author: Alan Garny '' Date: Thu Oct 13 16:40:31 2011 +1300 Added support for OpenGL in OpenCOR since we will most likely end up using it. Alternatively, someone might want to create an OpenGL-based plugin, so... commit 76debecc7eac7898afee8d55ed73a16e7a4ee30b Author: Alan Garny '' Date: Wed Oct 12 17:33:55 2011 +1300 Minor update of the error messages generated by our CellML plugin when trying to test the CellML API binaries. commit 3bbe4c74cbf722db614ef6493ab7271da7d4b3a7 Author: Alan Garny '' Date: Wed Oct 12 15:45:35 2011 +1300 Removed the frame around the editing Raw view. commit 08de7b8ec24568402a33aa2886e4bf727c65b572 Author: Alan Garny '' Date: Wed Oct 12 12:13:01 2011 +1300 Handle the change of file selection in the central widget. commit 244e27e3d44f560d258024431853fe5ad2a256cd Author: Alan Garny '' Date: Wed Oct 12 12:09:20 2011 +1300 Fixed a small problem with our GuiInterface::viewWidget function. commit aebec1976caaf326a500e700c77f011c46b748d3 Author: Alan Garny '' Date: Wed Oct 12 10:02:11 2011 +1300 Updated our test CellML files. Mocked something up for the RawView plugin '(for' demonstration 'purposes).' commit b7f888d694bcbcd19821abb5754b69ced44e723a Author: Alan Garny '' Date: Wed Oct 12 09:11:28 2011 +1300 Minor fix to the CellML plugin. commit 08cb7bbce1abb44d46092f9403f9c0752c90d1bd Author: Alan Garny '' Date: Wed Oct 12 09:07:49 2011 +1300 Makes use of that pre-computed test CellML results in case something went from with our use of the CellML API binaries. commit 247554e692a12875c9bf02f5ffa56df399af9ecf Author: Alan Garny '' Date: Wed Oct 12 09:07:08 2011 +1300 Added some pre-computed test CellML results '(just' for demonstration 'purposes).' commit 39836573026cac1c072635e28360b71f40bc7c27 Author: Alan Garny '' Date: Wed Oct 12 08:58:58 2011 +1300 Replaced QMessageBox calls with qDebug ones in the CellML plugin '(used' to test the CellML API 'binaries).' commit 2adbe0c3eda44cab0680c2d882b2cdee4eba4cdd Author: Alan Garny '' Date: Tue Oct 11 17:54:48 2011 +1300 Fixed a small problem with the no view widget message. commit da8d0e71bff99cd47e6efde9b436abf7feaac30a Author: Alan Garny '' Date: Tue Oct 11 16:25:58 2011 +1300 Put a light frame around the central 'widget'\''s' contents, thus making it look better. commit 170a6145762856631c1e5fb07d484f5d6706bfb4 Author: Alan Garny '' Date: Tue Oct 11 16:10:09 2011 +1300 Allow the no view warning message to be word-wrapped. commit 9e9a4fb24598e0121101b1a03a9c792abf9a58cc Author: Alan Garny '' Date: Tue Oct 11 15:54:34 2011 +1300 Added a warning message in case a view is selected for a particular file name, but the view 'doesn'\''t' support the file type of that file. Reworked the way plugins provide information about the name of the views they create. Also improved the retrieving of a widget for a particular view and file name '(it' used to work only for the case where a plugin creates only one view while we want to allow the creation of one or several 'views).' Some minor cleaning up. commit 04313d72b91e5b23ea31313beef371c438ae2115 Author: Alan Garny '' Date: Mon Oct 10 18:29:14 2011 +1300 Minor cleaning up for the CellML plugin. commit 8589f57385912b830b4eed6ab2855e3885a5e089 Author: Alan Garny '' Date: Mon Oct 10 17:58:59 2011 +1300 Minor change to a comment. commit 56aae214079fd9192120b4b541d2542e00216b31 Author: Alan Garny '' Date: Mon Oct 10 16:18:31 2011 +1300 Plotting, as part of the CoreSimulation plugin, some pre-computed CellML simulation results. commit 34081d627e94981c6d6f69873437a9a2ec09f853 Author: Alan Garny '' Date: Fri Oct 7 23:16:39 2011 +1300 Minor rephrasing of a comment. commit d7678667da505947c309be68db29172c60f96ef0 Author: Alan Garny '' Date: Fri Oct 7 22:24:27 2011 +1300 Removed a couple of files that are effectively empty and therefore not useful. Also cleaned up misc/utils.cpp and added ''\''support'\''' for Mac OS X 10.7 '(Lion).' commit e9b3b65cfe260bf908b1abfa4e6e1bd88d08844b Author: Alan Garny '' Date: Fri Oct 7 18:00:20 2011 +1300 A first go at handling the change of modes/views. The interest here is with the simulation mode for which we are currently showing a calendar just to check the underlying infrastructure works as expected. commit 570e1a7d72462728af6ffdc2a95997b7d3cdabd9 Author: Alan Garny '' Date: Fri Oct 7 15:49:28 2011 +1300 Some minor improvement to the Central widget. commit baa6e91f39693518450ecb11cb3f44ec7fd9219a Author: Alan Garny '' Date: Fri Oct 7 15:34:47 2011 +1300 Some cleaning up as a result of our support only one view for the Simulation mode. commit 927c1921e20774bd3f78a0608aa2f6dcd8db1c37 Author: Alan Garny '' Date: Fri Oct 7 15:26:35 2011 +1300 Support only one view for the Simulation mode. commit 18767e54d3575f4f2b4745829d10a3647c78b5cc Author: Alan Garny '' Date: Fri Oct 7 13:22:27 2011 +1300 Minor refactoring of one of 'Qwt'\''s' files which generated warnings on both Linux and Mac OS X '(but' not 'Windows).' commit 2847765e59c4fe11025d60fbe64817c790ad4643 Author: Alan Garny '' Date: Fri Oct 7 13:12:31 2011 +1300 Output the results of a CellML simulation in a temporary .CSV file. commit 6b04138e31b1a62829582578804e16a64a5b71b1 Author: Alan Garny '' Date: Fri Oct 7 10:29:34 2011 +1300 Was delaying things unnecessarily in our CellML test. commit cb22bfaa04669ba9587f74b1e221a4890a50db4c Author: Alan Garny '' Date: Thu Oct 6 19:23:28 2011 +1300 Improved a few things with regards to the use of palettes. commit b8bc55414aeae6ca9bdea2a392777a9d57759b40 Author: Alan Garny '' Date: Thu Oct 6 18:12:42 2011 +1300 Get the Qwt library to properly build. Updated the developer documentation. commit bba21b3654cc46224d2faf3ef5cd9e9d478ff004 Author: Alan Garny '' Date: Thu Oct 6 16:04:50 2011 +1300 Had forgotten to update the CoreSimulation 'plugin'\''s' Qt dependencies for Mac OS X deployment. commit 26b0bba1746b58456a1fe4065c924a597ce5ec75 Author: Alan Garny '' Date: Thu Oct 6 14:14:18 2011 +1300 Added the Qwt library as a plugin. Also created a dependence for the CoreSimulation plugin the new Qwt plugin. commit 1dd26a8d4bd4c190815b0872c3f2d22e0b66b0d0 Author: Alan Garny '' Date: Thu Oct 6 12:34:55 2011 +1300 Minor refactoring of some CMake files. commit 4eeac630b48b52c56a99a22442f40d611e198d07 Author: Alan Garny '' Date: Wed Oct 5 17:37:12 2011 +1300 Got some code to run a CellML file. However, though it all works fine, it looks rather cumbersome to me. commit 410969d7223ec9811141169ebad3330f51969b9f Author: Alan Garny '' Date: Wed Oct 5 17:35:46 2011 +1300 Slight improvement to the CellML Model Repository plugin '(use' a better regular expression engine and 'don'\''t' have things 'case-sensitive).' commit b9792671cefbfe2f38bc20b02bfa4da9201f4a4e Author: Alan Garny '' Date: Wed Oct 5 09:31:20 2011 +1300 Slight update to the developer documentation '(added' a reference to the CellML API '1.10).' commit efdf0120ee209c76634e7596a33b23b5e524870c Author: Alan Garny '' Date: Tue Oct 4 17:05:59 2011 +1300 Modified the CellML test so that it now uses a more C++ like syntax. Note, however, that using the current approach, one should call 'release_ref()' for objects '(e.g.' for the CelML 'bootsprap)' and 'free()' for strings '(e.g.' for 'CellMLComponent::name()),' but we 'don'\''t' here since it would make the code somewhat crazy again. This means that the current code badly leaks memory, but... we 'don'\''t' care for now. We just want to check that we can do what we want with the CellML API. Later on, we will have to write a C++ wrapper to the CellML API which offers a C++ like syntax to the CellML API and handles those 'release_ref()' and 'free()' for us. commit 7f36f35816a64024d4bc5a6cf1777f834c257260 Author: Alan Garny '' Date: Tue Oct 4 14:20:17 2011 +1300 Updated the two CellML files that we ship with OpenCOR so that they now contain some metadata. commit 0b4ca6b9daeddd2e34881ed6c092831391371680 Author: Alan Garny '' Date: Tue Oct 4 13:33:31 2011 +1300 Some more retrieving of information from a CellML model. commit 36890239c86ca3df5fdfe03c9072707ff2e3197b Author: Alan Garny '' Date: Tue Oct 4 13:01:27 2011 +1300 Doing our CellML testing using the Hodgkin-Huxley 1952 model. Retrieving the name of the model, as well as the name of its components and 'components'\''' variables. commit d6a9528ab4ff31d08e2a406033634ddfe8833ec4 Author: Alan Garny '' Date: Tue Oct 4 12:06:35 2011 +1300 Updated the link to the JSON list of CellML models, so that it now points to the live repository. commit d244156c454ad7c808abe4908e5991ca8cf0be5c Author: Alan Garny '' Date: Tue Oct 4 09:21:57 2011 +1300 Fixed a silly overlook in the CellML Model Repository plugin '(was' trying to give the focus to a disabled 'widget!).' commit f792b32084bcfd2299c91d2a93a451f2b24ca679 Author: Alan Garny '' Date: Mon Oct 3 19:06:20 2011 +1300 Oops, a file got overlooked by 'TortoiseGit...?!' commit fd8c888493988a36f35fa4273816fa3f6d685e0c Author: Alan Garny '' Date: Mon Oct 3 19:03:53 2011 +1300 Use only one copy of the CellML header files '(rather' than distinguishing between Windows, Linux x86, Linux x64 and Mac OS 'X),' since they are all the same. Removed cda_config.h though, since 'it'\''s' not useful for using the CellML API. commit 6ba6f1d692a81cc058cd63cff61645c7334eb821 Author: Alan Garny '' Date: Mon Oct 3 18:32:09 2011 +1300 Work on the CellML test. commit bb099c74ddf932b591b0a3cfdfeb871f4b64076f Author: Alan Garny '' Date: Mon Oct 3 17:48:52 2011 +1300 Minor refactoring. commit 4961e5dd570a874f8ed544280c066fd19072c1a6 Author: Alan Garny '' Date: Mon Oct 3 17:21:37 2011 +1300 Going back to hard-coding some CellML test, since the GUI is not yet ready for what we want to do which is to test/use the CellML API to run a CellML model. commit 4a8b5fe53f34f34ec308f81c8189e1d00022a57c Author: Alan Garny '' Date: Mon Oct 3 17:00:22 2011 +1300 For commit e59a00383951d7fded382e0ae57e47713bef40b9 to be fully effective, we also need to copy some libraries to '${CMAKE_BINARY_DIR}.' commit fa836d78f9baf27817aede45ca6ace996d9a06b1 Author: Alan Garny '' Date: Mon Oct 3 15:58:54 2011 +1300 Minor cleaning up of the CellML plugin. commit 08b6c6524c68c8e3970e22f9bf4fa391b7e6cd6f Author: Alan Garny '' Date: Mon Oct 3 13:38:03 2011 +1300 Added a new raw view for the editing of files using a text editor. commit a935bbe0ddbcacb5fe77ae5377a7cbdae1b0536a Author: Alan Garny '' Date: Mon Oct 3 12:41:10 2011 +1300 Got our various current actions to be properly enabled/disabled. commit e6251cd9c6b86fa083e6dbeccae0e1c53f3ec3bd Author: Alan Garny '' Date: Mon Oct 3 12:25:21 2011 +1300 Updating the actions after retranslating OpenCOR 'doesn'\''t' seem required anymore. It could be that it was a know issue and that it got fixed in a recent version of Qt. commit 990b46b9c641868f101abee1b78834179003f8bf Author: Alan Garny '' Date: Mon Oct 3 11:22:43 2011 +1300 Connected mFileCloseAction and mFileCloseAllAction in the Core plugin. commit 3d3bfb453bb08d68e37cfd9a580fd29bd2c3f595 Author: Alan Garny '' Date: Mon Oct 3 08:46:40 2011 +1300 Improved the CellML Model Repository plugin, even though it would only be noticeable if we were not to disable/enable the GUI. commit 988be84f7e164828a429f89337647c72b08738a7 Author: Alan Garny '' Date: Sun Oct 2 12:51:04 2011 +1300 Make use of a regular expression to filter the list of CellML Models in the CellML Model Repository plugin. commit c6db0fe7925f2892bf59b2ba0c4c653819829dfb Author: Alan Garny '' Date: Sat Oct 1 18:01:57 2011 +1300 Slight improvement to the CellML Model Repository plugin '(updated' a tooltip and status 'tip).' commit 6df1460a3555af3647ce67331675cd44f3a27ea5 Author: Alan Garny '' Date: Sat Oct 1 15:11:03 2011 +1300 Fixed a small issue with the CellML Model Repository plugin: its GUI was being re-enabled in the wrong place. commit 42c1d658acbbbfce53a83447d37a3297cdefbad5 Author: Alan Garny '' Date: Sat Oct 1 14:50:50 2011 +1300 Make sure that the icon of the reload button in the CellML Model Repository plugin is 16x16 in size '(was' the case on Windows and Mac OS X, but not on 'Linux).' commit 2579fe29c33ab4c95e9c100dc5c608ea183d8cf0 Author: Alan Garny '' Date: Sat Oct 1 14:35:28 2011 +1300 Improved the CellML Model Repository plugin by adding a Reload button to it. commit 128feb7918a7285a00ab6dc162aa15e706a41263 Author: Alan Garny '' Date: Fri Sep 30 16:34:45 2011 +1300 Some cleaning up. Added a 'File|New' menu with CellML 1.0/1.1 menu items that get added as part of the CoreCellMLEditing plugin. commit 376cbcac6541359bdbec97e4fb55e36eb68a65e5 Author: Alan Garny '' Date: Fri Sep 30 14:18:00 2011 +1300 Revised the Core interface by adding a setup method to allow plugins to set themselves up knkowing what other plugins are about. Incidentally, this fixed a pending, though unknown, problem whereby we were trying to setup a plugin while we 'didn'\''t' yet know what the other plugins were about '(check' 'CorePlugin::initialize).' As a result of the above, the File Browser and File Organiser plugins now work fully. commit df2131ab81d7eee4e53d44120e6ea55ee83ad45f Author: Alan Garny '' Date: Fri Sep 30 11:19:57 2011 +1300 Minor refactoring for the Viewer widget. commit 016a7441011a4e09b81a08e8974c2474514092db Author: Alan Garny '' Date: Fri Sep 30 10:58:33 2011 +1300 Minor refactoring. commit 3627a90d587008e3f291f2fb9f3b1033da13b459 Author: Alan Garny '' Date: Fri Sep 30 10:37:58 2011 +1300 Some minor improvements to the CellML Model Repository plugin. commit 86233daa564388f3df4aa5ed3e9e2b7da9bc10ce Author: Alan Garny '' Date: Fri Sep 30 09:44:38 2011 +1300 Slight improvement to the Help plugin when it comes to retranslating it. commit 19e6d549cd6eae175611be83e446cc4b3d7959df Author: Alan Garny '' Date: Fri Sep 30 08:40:27 2011 +1300 Minor update to the developer documentation as a result of the release of Qt Creator 2.3.1. commit d0e182286608f9084e147a5a811e090b289c88fe Author: Alan Garny '' Date: Thu Sep 29 20:27:02 2011 +1300 Slight overlook... commit f636538b61b140e3427afb64c75bff1c84415e48 Author: Alan Garny '' Date: Thu Sep 29 20:25:47 2011 +1300 Got rid of the InternetFile class which was being used to synchronously retrieve our list of CellML models in a JSON format. Indeed, that was too blocking '(what' a 'surprise!).' Anyway, now done with the CellML Model Repository plugin. For now, at least, i.e. while ''\''proper'\''' Web Services to PMR2 become available... commit 9885d8694e220950bcb8a64bf10ef40219ed293c Author: Alan Garny '' Date: Thu Sep 29 20:00:58 2011 +1300 Minor improvement to the Help widget when it comes to changing the locale. Now generate a list of CellML models which gets updated on the fly based on the 'user'\''s' search criteria. commit d97d47f80674011166f4b04c0bf4eaf795a5b1b4 Author: Alan Garny '' Date: Thu Sep 29 18:33:26 2011 +1300 Some more work on the CellML Model Repository plugin. Also fixed/improved a couple of things with regards to translations. commit 061654e9296beafd87d7eddacd60942f4bf7f920 Author: Alan Garny '' Date: Thu Sep 29 17:25:16 2011 +1300 Re-added the CellML Model Repository widget since we want to demonstrate the search of of models using 'PMR2'\''s' Web service. Can now read JSON code. commit f16d5541ad53b63efe413b6249252363171a1217 Author: Alan Garny '' Date: Thu Sep 29 15:15:14 2011 +1300 Slight update to the developer documentation. commit 4e64b14ea1ec59a67e26a4c5314ae4b0d37786ec Author: Alan Garny '' Date: Thu Sep 29 14:52:17 2011 +1300 Very minor fix '(was' getting a warning on Linux and Mac OS 'X).' commit 6644a129b60fb4fa6e769fdf7078dceea49502d9 Author: Alan Garny '' Date: Thu Sep 29 14:22:28 2011 +1300 Can now synchronously retrieve a file off the Internet. We could have done that asynchronously natively, but the GUI would have to let the user know that something is happening and 'couldn'\''t' be bothered to do it for now. So, instead we just ''\''block'\''' until we the file. Anyway, used the above to retrieve the automatically generated JSON file off http://50.18.64.32/workspace/rest/contents.json. commit 3e7b05804862c972ed93410fbba4086f1b362529 Author: Alan Garny '' Date: Thu Sep 29 10:46:48 2011 +1300 Removed the CellML Model Repository widget since it was here just to demonstrate a web connection and nothing more. commit 5d6841c2aec19167d6d0d8907fc452e0b6106d01 Author: Alan Garny '' Date: Thu Sep 29 10:24:46 2011 +1300 Slight update to the File Organiser plugin. commit dc312f083475718ca900d840d8ad144d083c382b Author: Alan Garny '' Date: Thu Sep 29 10:05:57 2011 +1300 Minor editing of comments. commit 9a914106dd0de4293a459480622f0c35c90d62a2 Author: Alan Garny '' Date: Wed Sep 28 18:06:13 2011 +1300 I thought I was done with the loading of plugins, but clearly not. Now, with our new QJson plugin, something 'wasn'\''t' working on Windows. Had I not reverted some code at some point '(see' commit e1b91e5e728bf5207ddc5c993f7b7bec863598bd and then commit f2393841eec04a6146e4df12212fa5b48cee0920, commit 289e75c49ba9bb7e1845a29b7ed59b15a6f34733 and commit '54e27a4497d9678d26d4a65257c5a350a999d761),' it would have worked, but... Anyway, now, 'everything'\''s' fine on all three platforms... with our current set of plugins... commit dcb783f110dbf66b0a630d83f53110ddc91c821f Author: Alan Garny '' Date: Wed Sep 28 17:39:25 2011 +1300 ... and a few more files that TortoiseGit 'didn'\''t' pick up in the first 'place!' commit a8a9af417be1ad8b7de72be00f1288c54f4c77c9 Author: Alan Garny '' Date: Wed Sep 28 17:38:13 2011 +1300 Created a new plugin so we can use QJson 0.7.1, thus providing OpenCOR with JSON support '(at' least required by our CellML Model Repository 'plugin).' commit 46d0c5b7fff9f2216490b6b812bd4d256499b95e Author: Alan Garny '' Date: Wed Sep 28 13:55:40 2011 +1300 Minor 3rd party related updates. commit 41dfe2fcf978365009e8dfc2aeb3fec20ed906fb Author: Alan Garny '' Date: Wed Sep 28 13:18:37 2011 +1300 Even though the Core and Help plugins are not special cases anymore, there are still a couple of things that we want to be done only by them. commit eb0fd057d4f1441b6764278234f7f7047a8af699 Author: Alan Garny '' Date: Wed Sep 28 13:05:21 2011 +1300 The Core plugin is not considered as a special case anymore. commit dce398fa0b05dd046cbff6e71f1de3a0e24a2c06 Author: Alan Garny '' Date: Wed Sep 28 12:15:20 2011 +1300 Fixed a small issue related to the sorting of menu item titles that contains accentuated characters. commit cc4655521e9e99d72d1f7cd9cbf1bbac5419bd5b Author: Alan Garny '' Date: Wed Sep 28 09:46:24 2011 +1300 The Viewer plugin is now visible within OpenCOR. Updated the treatment of the View menu as a result. commit 21b7bf630cc340afa658598db2dd88bcf486009a Author: Alan Garny '' Date: Tue Sep 27 14:28:32 2011 +1300 The Help plugin is not considered as a special case anymore. Also, as a result, now have a menu item for our various Organisation windows. Some cleaning up. commit e421e855e2f2262981349d4e8edcd11d9bd6c57f Author: Alan Garny '' Date: Tue Sep 27 10:32:39 2011 +1300 Working towards not making the Core and Help plugins a special case. commit 1d315ffd4a9555790111a64983e519ff1b3edba7 Author: Alan Garny '' Date: Tue Sep 27 10:19:29 2011 +1300 The CellML Model Repository, File Browser and File Organiser plugins now have their respective window up and running. Revised the GUI interface in the process '(no' need for 'addWindow).' Otherwise, there is currently no communication between those 'plugins'\''' window and OpenCOR itself. Will need an interface for communication to occur. Also, will need to add a 'View|Organisation' menu to show/hide those 'plugins'\''' window. commit ee5d16dcabb416ab7134af25c9d1ca284e715502 Author: Alan Garny '' Date: Mon Sep 26 19:10:05 2011 +1300 Renamed the API interface to File interface, since it had nothing to do with an API while everything to do with file support. commit dee365fe530d9e9d48a8e5cd9b9abd1341db71e1 Author: Alan Garny '' Date: Mon Sep 26 19:04:23 2011 +1300 Slightly reworked the GUI and API interfaces, so that a plugin can implement both if needed. commit e487caad75accaa612150e69d571f841932390df Author: Alan Garny '' Date: Mon Sep 26 18:56:40 2011 +1300 Made the GUI interface independent of the core interface, i.e. the way it should have been in the first place. commit fe9eadc60fa1c0e0afd36a8934b485151c7aed6e Author: Alan Garny '' Date: Mon Sep 26 17:52:47 2011 +1300 Made the API interface independent from the core interface. commit f0dea57a1f4dee92db93a23a2073d26567191cbd Author: Alan Garny '' Date: Mon Sep 26 17:36:30 2011 +1300 Some cleaning up in the 'interface(s)' implemented by our various plugins. Minor refactoring too. commit 3db2298bc360e5cd283176455c2643c370cd151a Author: Alan Garny '' Date: Mon Sep 26 17:01:10 2011 +1300 Minor cleaning up of cmake/common.cmake. Created a new interface for internationalisation '(as' part of an effort to modularise our plugin interfaces, as opposed to having them inheriting from the core interface, as well as ensuring that non only GUI plugins may support 'internationalisation).' Some refactoring of of the core and GUI interfaces. Improved the CellML plugin by not having ''\''hard-coded'\''' translations for the CellML file type description '(indeed,' there was really no need to do it the way it was originally 'done!).' commit 2f7d51d9456f8fa759a62e54d410c9a50e7156be Author: Alan Garny '' Date: Mon Sep 26 12:58:14 2011 +1300 Moved the PluginInfo class to src/plugins/plugininfo.cpp/h from src/plugins/coreinterface.cpp/h. commit c549e93c3fd62bc1dd6dce09655471ffa519d52d Author: Alan Garny '' Date: Mon Sep 26 08:47:09 2011 +1300 Minor refactoring. commit 03e4897d422a573d4ca3f50abf1956fd310fa6fc Author: Alan Garny '' Date: Sun Sep 25 20:27:59 2011 +1300 Some straightforward refactoring: move Version from CoreInterface to PluginInfo. Also renamed InterfaceVersion to Version. commit fbcd377cf4a283ef4cfff06f7615cc0abaf9eb1c Author: Alan Garny '' Date: Sat Sep 24 15:13:02 2011 +1200 Renamed PluginInterface to CoreInterface. Also updated the plugins side of the developer documentation. Some minor cleaning up. commit 6c0538d575129379988718027ff064094550b51e Author: Alan Garny '' Date: Fri Sep 23 19:53:47 2011 +1200 Reorder the menu items from the 'View|Toolbars' menu, thus making the contents of that menu look ''\''better'\''.' commit 6c4e6cd1bf8d5954ff28026f5f2456c4132fb358 Author: Alan Garny '' Date: Fri Sep 23 19:17:35 2011 +1200 Done with the merger of menus/toolbars created by plugins, should they have the same name. commit 2aef82252e78764db788868597602edaff24cd11 Author: Alan Garny '' Date: Fri Sep 23 16:32:17 2011 +1200 Working towards the merger of menus/toolbars created by plugins, should they have the same name. commit cb96aed177aaca4ca34a4ba94b34c892f8b154f2 Author: Alan Garny '' Date: Fri Sep 23 16:14:44 2011 +1200 To check whether a given toolbar/menu has already been created by another plugin 'can'\''t' work the way it was done using GuiInterface::toolbars and GuiInterface::menus, since these were static to the CURRENT plugin '(as' opposed to ALL the 'plugins).' This is kind of obvious when you think of it, but well... Anyway, now, we just create the menu or toolbar, and it will be up to the main window to reconcile things '(i.e.' merge the contents of two 'toolbars/menus),' if needed. commit 2e42802f79db20170c3e0cb082ec7f61a3ca8740 Author: Alan Garny '' Date: Fri Sep 23 15:59:39 2011 +1200 What made the Edit toolbar not show/hide was the fact that its menu action was not 'checkable!' commit 1c278e94263b21fb9a5129e6f3132f1eadcbe3d6 Author: Alan Garny '' Date: Fri Sep 23 15:36:04 2011 +1200 Minor refactoring. commit 9bc1b089f10c93a3c2547b22c8eba5f0d0bb2643 Author: Alan Garny '' Date: Fri Sep 23 15:02:09 2011 +1200 Change the size of the icons in the toolbars created by a plugin. commit 4bd974a29abe8cb2836ac7a2b09f0c781ba988f0 Author: Alan Garny '' Date: Fri Sep 23 14:50:27 2011 +1200 Now have a menu item added to the 'View|Toolbars' to control the visibility of a toolbar that has been added by a plugin. Note that for some weird reason, it 'doesn'\''t' work for the Edit 'toolbar...!?' Fixed a few icon issues with the File menu. commit 3b9944fde2a286aefe41d1178933bb7bc93e89e8 Author: Alan Garny '' Date: Fri Sep 23 11:48:38 2011 +1200 Done with being able to add a toolbar from a plugin and made use of it for the CoreEditing plugin. commit f8bd5055e0d842a3b4186a3cdfe68039714406ee Author: Alan Garny '' Date: Fri Sep 23 10:03:47 2011 +1200 Support for one application toolbar of a given name across the plugins. commit 49a0aafbefd306326ca0180c9426efda972dec99 Author: Alan Garny '' Date: Fri Sep 23 09:51:53 2011 +1200 Support for one application menu of a given name across the plugins. commit 707c3c7eb86b01f862f9c80ef81510747a0f888b Author: Alan Garny '' Date: Fri Sep 23 09:27:42 2011 +1200 Oops, we want QToolBar toolbars, not DockToolBar. commit 6b1acde59bd4001e0f53e62d8d3e00bf0d896662 Author: Alan Garny '' Date: Fri Sep 23 09:14:48 2011 +1200 Started work on supporting toolbars in plugins. commit 15450777046191e706527d8063d604f60270e1fb Author: Alan Garny '' Date: Thu Sep 22 19:55:12 2011 +1200 Fixed an issue with our use of CMake when it comes to copying the CellML binaries to our bin folder. When building in parallel, then it could happen that the bin directory might not have been created when trying to copy the CellML binaries, thus messing things up in the end. Now, 'it'\''s' all fine, no matter whether we build in parallel or not. commit 72ae123e57ac9bd9362eaee6d1b3b8a0563669a4 Author: Alan Garny '' Date: Thu Sep 22 18:56:20 2011 +1200 Minor fix to the winConsole CMakeLists.txt file. commit 25ff78b774780b7a4c6c1f12ceaa6a88f08cd3cc Author: Alan Garny '' Date: Thu Sep 22 17:54:05 2011 +1200 The refactoring I was talking about in the last commit. commit c8df0fbb55e0aa9ea73e2d9058cbe4430dd88d1d Author: Alan Garny '' Date: Thu Sep 22 17:03:39 2011 +1200 Donne with opening any file, including those that are supported. Need to do a bit of refactoring though. commit 76959d21f033f316fd20fc306559988837a27c77 Author: Alan Garny '' Date: Thu Sep 22 16:33:07 2011 +1200 Improved the way settings are loaded/saved. Some cleaning up. commit 2c9b15ab1cd663688ac29ae29cd57f549087348f Author: Alan Garny '' Date: Thu Sep 22 15:26:22 2011 +1200 Some refactoring to have the loading/saving of GUI 'plugin'\''s' settings done within the GUI interface rather than in the main window as it used to be the case '(why' on earth did I do it that way the first time 'round?!).' commit 9d5ad6896c576f09f8583f6f252dde568c904a95 Author: Alan Garny '' Date: Thu Sep 22 14:44:48 2011 +1200 Minor refactoring. commit 7c5c6434ce2da8e54e86f5eb8ff1b98289be07fd Author: Alan Garny '' Date: Thu Sep 22 14:04:49 2011 +1200 Some minor refactoring to make it easier to use certain parameters from a plugin. commit 589d37145eaf76dfdd8fb725e2a0f729e39aec95 Author: Alan Garny '' Date: Thu Sep 22 13:12:21 2011 +1200 Minor refactoring. Started work towards the opening of a file. commit 4ce20378306acbfac2d47bb4edc686e69cd5ff48 Author: Alan Garny '' Date: Thu Sep 22 09:35:11 2011 +1200 Removed the Core plugin dependency from the CellML plugin '(since' we 'don'\''t' have our small CellML test, which needed access to Core::saveResourceAs, in the CellML plugin 'anymore).' commit 2acee7f18cf233cfb38411fd6c9add7ff550f8e9 Author: Alan Garny '' Date: Thu Sep 22 09:29:32 2011 +1200 Minor update to the documentation. commit 33f32107c7490f08eed0a71f3bf888363e1da57f Author: Alan Garny '' Date: Thu Sep 22 09:10:09 2011 +1200 Reverted commit 289e75c49ba9bb7e1845a29b7ed59b15a6f34733 '(about' the loading of plugins on 'Linux)' and came up with a ''\''proper'\''' solution, i.e. not one that is ''\''black' 'magic'\''!' commit 920b884ee9ffb7dfdf70318539a680c60d49dff5 Author: Alan Garny '' Date: Wed Sep 21 17:10:49 2011 +1200 Created an API interface. The fileTypes method is now part of it rather than part of the default plugin interface. Some minor cleaning up. commit b8534091c06973e74073d8f8967432b3f64f3fb7 Author: Alan Garny '' Date: Wed Sep 21 16:30:33 2011 +1200 Minor refactoring. commit 726cd56fa03944b63d5af7ed3e65ce1014a990fa Author: Alan Garny '' Date: Wed Sep 21 16:11:06 2011 +1200 Minor refactoring. Also, support file types through plugins. E.g. the CellML plugin adds support for a CellML file type. This means that whenever we want to open a file, it will be possible to open a CellML file. commit da8e2626b6cebcc7b819153c81b47730d2ed1b07 Author: Alan Garny '' Date: Wed Sep 21 14:36:09 2011 +1200 Now that the CellML binaries work fine on all three platforms, we can remove our small CellML test. commit d48b5bb3cf0129ac1b327edcbf1c6cd01371aa1e Author: Alan Garny '' Date: Wed Sep 21 14:04:06 2011 +1200 Been getting confused with the loading of plugins on Linux, but I think I have finally nailed it even though it still 'doesn'\''t' fully make sense to 'me!' commit 3082d4910418500a6a0ff497671d34db4f2d4918 Author: Alan Garny '' Date: Wed Sep 21 11:21:06 2011 +1200 Fixed the issue of testing plugins on Linux. commit 445a1ea9a85a24b085131dcfee9c9c6a365c58c1 Author: Alan Garny '' Date: Tue Sep 20 19:14:46 2011 +1200 Rearranged a few files. commit 162af6135243b72e3d3571ab7c0da262b1bb32f2 Author: Alan Garny '' Date: Tue Sep 20 19:03:42 2011 +1200 Cleaned up our main CMakeLists.txt. Also got the CellML binaries to work on Windows '(i.e.' our missing 'platform),' even though it does require an extra DLL. commit a203a37268d7546226e7b967201c31665962301a Author: Alan Garny '' Date: Tue Sep 20 18:20:13 2011 +1200 'Wasn'\''t' deploying the CellML binaries in the right place on Windows. commit e3a18fdaff7bc35f307c1084d4214e9d25ce55d3 Author: Alan Garny '' Date: Tue Sep 20 14:31:09 2011 +1200 Aesthetic update. commit c97a07da046bc5949a241ad2a3b2baf286b69203 Author: Alan Garny '' Date: Tue Sep 20 13:27:01 2011 +1200 Minor refactoring of CMake files. commit 55fea4cd28c8fd6072b8b8a569e88f63d5f5905e Author: Alan Garny '' Date: Mon Sep 19 22:42:13 2011 +0200 Fixed a minor issue of text encoding with src/plugins/api/CellML/CMakeLists.txt. commit b8866b0723888a399fff5b7fcbdb44d73578b91c Author: Alan Garny '' Date: Sat Sep 17 22:05:01 2011 +0200 Done with deploying the CellML binaries on Mac OS X and it all 'works!' Man, I should work from an airport more 'often!' ':)' commit 9c6c4f981c0136843b72273443a1375fb2b2ed8f Author: Alan Garny '' Date: Sat Sep 17 21:32:00 2011 +0200 Working towards the deployment of the CellML binaries on Mac OS X. commit 0feef23862f6b01eeac54e8d4e3502d8b9b6e4c3 Author: Alan Garny '' Date: Sat Sep 17 21:12:46 2011 +0200 Some more cleaning up for the Mac OS X deployment. commit 78d026b5fc56aa32f6eac28b83f6bbdb5aa18cea Author: Alan Garny '' Date: Sat Sep 17 20:54:39 2011 +0200 Some cleaning up regarding deployment on Mac OS X. commit eafabaa0985562a6e9e504597a17f7215bc9a31f Author: Alan Garny '' Date: Sat Sep 17 00:43:53 2011 +0200 Removed the CellML binaries from the CellML 'plugin'\''s' resource '(it' was done for Linux x86, but not Windows x86, Linux x64 and Mac OS X 'x64).' commit dc2b9f73f624c1b72943ba6f78265d27e3c3c6a2 Author: Alan Garny '' Date: Sat Sep 17 00:35:21 2011 +0200 Refactored the CMake code so that we can now deploy the CellML binaries on Mac OS X. commit a85f4e567bb056ce278ceec0206a116059bb25c9 Author: Alan Garny '' Date: Fri Sep 16 21:58:32 2011 +0100 Ok, it seems like my wish to have the CellML binaries as a resource to the CellML plugin 'can'\''t' work '(when' running a deployed version of 'OpenCOR).' So, instead, we must deploy the CellML binaries in the same way that we deploy the Qt libraries. Oh well... commit cd5986bc662dff66b0e443c8fec67df08b395a2e Author: Alan Garny '' Date: Fri Sep 16 19:06:05 2011 +0100 Minor refactoring of distrib/application.sh.linux.in. commit bb5d205b55763286c884a653914f581454464deb Author: Alan Garny '' Date: Fri Sep 16 18:05:57 2011 +0100 Forgot to update the CellML plugin info function to account for the fact that the CellML plugin requires the Core plugin. commit 1a2d14ece4a957b3ffa65d6747035f2ceebb9ed1 Author: Alan Garny '' Date: Fri Sep 16 16:05:34 2011 +0200 Minor refactoring of our cmake/common.cmake file. commit 2fec08b2a5784f2f58092ad4248ae02390fe66c7 Author: Alan Garny '' Date: Fri Sep 16 15:21:08 2011 +0200 Minor refactoring of our main CMakeLists.txt file. commit cd459cf73425215e32b36499a541f6a8d17cb6c8 Author: Alan Garny '' Date: Fri Sep 16 14:18:41 2011 +0100 Oops, I had slightly messed things up by adding the phonon library to the Linux deployment process. commit 1d77d596a615908db7a5ef4a70f8e4e3c59d8772 Author: Alan Garny '' Date: Fri Sep 16 11:11:36 2011 +0100 Added the phonon library to the Linux distribution since 'it'\''s' required '(according' to 'ldd).' commit 0f946a8583b68b5e98c44ed4ee90b76969a5966c Author: Alan Garny '' Date: Thu Sep 15 20:51:42 2011 +0100 Use a local test CellML file '(for' our testing of the CellML 'API)' as opposed to using a CellML file which located on PMR2 '(thus' making testing unnecessarily 'slow).' commit 7e20c8995c17f731bd4b39ea5aea5856d2c8bde5 Author: Alan Garny '' Date: Thu Sep 15 10:40:03 2011 +0100 Minor refactoring that got CellML to work on Linux '(to' start with / at 'least).' commit 3d3d614b3fd886e7dd6e48c8e4989dbf807b8399 Merge: 6ee745776 f16753306 Author: Alan Garny '' Date: Wed Sep 14 22:47:04 2011 +0200 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 6ee745776d1c52dc7657d809642ea19a6e0e57a0 Author: Alan Garny '' Date: Wed Sep 14 22:46:03 2011 +0200 Addressed the small problem of building OpenCOR on Mac OS X using Qt Creator. commit f16753306860b800f49623cbdce6b007f3cd01c7 Author: Alan Garny '' Date: Tue Sep 13 22:05:33 2011 +0100 Oops, 'didn'\''t' properly updated the CellML.qrc files. commit 4165149b13a288d84720f262b0873fded94f4ff1 Author: Alan Garny '' Date: Tue Sep 13 21:57:56 2011 +0100 Now extract and load the CellML libraries upon loading the CellML plugin '(and' unload everything on unloading the 'plugin).' Yet, the CellML library still 'doesn'\''t' work... Need to figure out why... Slightly refactored the help window with regards to extracting the help files. commit 84f8685d309b844694c75df35fb84089bdca8c7f Author: Alan Garny '' Date: Tue Sep 13 17:50:27 2011 +0100 Working towards making use of the CellML binaries within OpenCOR. Right now, everything builds fine '(at' least, on Linux 'x86),' but 'won'\''t' work as such since the binaries need to be unzipped '(from' the CellML 'resource)' and loaded. commit fd0108f2acf591a5b1bf9bf6bdb5d0d1ffd98068 Author: Alan Garny '' Date: Mon Sep 12 00:42:02 2011 +0200 Hmm, ok, to use @rpath on Mac OS X '(for' an OpenCOR 'plugin'\''s' dependencies on one or several other OpenCOR 'plugins)' seems to require a bit more work which is not documented at http://doc.qt.nokia.com/latest/deployment-mac.html, $'so\342\200\246' reverting to @executable_path commit cf63468cb4ebbd393501f3b185a540d957289207 Author: Alan Garny '' Date: Sun Sep 11 23:33:45 2011 +0200 Very minor update to the Mac OS X deployment '(note:' it 'doesn'\''t' make any difference whatsoever, but at least 'it'\''s' consistent with what has been done 'elsewhere).' commit 1c20fd4de56c60ec5f3634f92b77b13f25b17021 Author: Alan Garny '' Date: Mon Sep 5 20:32:22 2011 +0200 Slight update to the developer documentation. commit b2e13d44176e527095cdabd604da3337654040ed Author: Alan Garny '' Date: Sat Sep 3 17:26:32 2011 +0100 Oops, forgot to update the name of a manually deployed library. commit f5a02b7ee94c72288b54448b7b9f93e16677b650 Author: Alan Garny '' Date: Sat Sep 3 16:56:28 2011 +0100 Slight improvement to the Mac OS X deployment of our plugins '(as' a result of trying to mimic what is done in Qt 'Creator).' commit 4829222e78dedba14a1b3f3f1fc5856cc0987281 Author: Alan Garny '' Date: Sat Sep 3 16:50:53 2011 +0100 Some fixes related to Mac OS X deployment. Still not able to get the Help plugin to work 'again...!?' commit b08f2e62d3c1dfb278e2f46f37630a9a6dee2519 Author: Alan Garny '' Date: Sat Sep 3 15:42:57 2011 +0100 For Mac OS X, added the QtXml framework to the bundle, since 'it'\''s' required by the QtMmlWidget plugin and is therefore not automatically deployed by macdeployqt. Also fixed the issue of the plugins not being properly deployed by macdeployqt. commit cfee6b78995f63c01529b293c784eb95c28caf2d Author: Alan Garny '' Date: Fri Sep 2 12:33:41 2011 +0100 Now require the version of Qt that we are actually '(i.e.' 4.7.4 at the 'moment).' People can always use a different version if they want '(see' the Pre-requirements 'documentation),' but then to their own risk. Updated the documentation to account for the fact that we are not using Qt 4.7.3 and Qt Creator 2.2.1 as individual packages, but Qt 4.7.4 and Qt Creator 2.3 as part of Qt SDK 1.1.3. Note that there is still something that needs to be done with regards to deploying on Mac OS X, but this will have to wait a bit since I really ought to get going with my move back to France... commit 6cc402271650ce20237d68a291e8777fea71fabd Author: Alan Garny '' Date: Fri Sep 2 00:25:24 2011 +0100 Added another Mac OS X peculiarity '(Cmd+H)' even though the automatic application menus '(i.e.' Hide, Hide Others, Show 'All)' 'don'\''t' enable/disable as they should '(Qt' 'issue?).' commit d87e785c88d05d6f579dcd34e47a51c5906a48ce Author: Alan Garny '' Date: Fri Sep 2 00:09:59 2011 +0100 Fixed a few Mac OS X deployment issues as a result of switching to Qt SDK 1.1.3 '(i.e.' Qt 4.7.4 and Qt Creator '2.3).' commit b674c65a3147c9ec2bdb3e389c7ec5d9209327ef Merge: d1c092b79 154ccd206 Author: Alan Garny '' Date: Thu Sep 1 17:19:42 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit d1c092b7981f7011ddbbf5fc70ce2085650fe116 Author: Alan Garny '' Date: Thu Sep 1 17:18:57 2011 +0100 Slight improvements for the CMake build on Mac OS X. commit 154ccd206c074603e6a97c0c12afd5e8bc11a902 Author: Alan Garny '' Date: Wed Aug 31 19:48:09 2011 +0100 Removed an obsolete comment in the CMake file for the LibQxt library. commit 0175ff0023a35016b2e22486950f4ddffe7a3a6e Author: Alan Garny '' Date: Wed Aug 31 18:40:09 2011 +0100 Minor improvement to our common CMake file. commit 62e2a8d1e73b985ea86598c11b7576c7e1fdc016 Author: Alan Garny '' Date: Wed Aug 31 18:09:36 2011 +0100 Forgot to update the include directories for the CellML plugin. commit 4bad95df67274fa933b2c42aea048647a285e0c4 Author: Alan Garny '' Date: Wed Aug 31 14:30:07 2011 +0100 Minor improvement to our CellML 'plugin'\''s' CMakeLists.txt file. commit dcddecf7e0df145eda1f35e266599b74def5d30b Author: Alan Garny '' Date: Wed Aug 31 14:26:34 2011 +0100 Oops, somehow managed to overlook a couple of files... commit 6ff2b2b53a783a9f3e951963ff6f148fa3ddf81b Author: Alan Garny '' Date: Wed Aug 31 14:24:16 2011 +0100 Our CellML plugin now has the CellML 1.10rc1 binaries as a ZIP resource. Not sure it can be used as such though. So, yes, some testing is required, but at least 'that'\''s' how things would be done with regards to the CellML plugin, i.e. have the plugin file containing everything that is related to the CellML API rather than have several library files as is the case with the CellML API binaries. commit 0c7327a15624eda4075dd7e124500b7af7b4abbf Author: Alan Garny '' Date: Wed Aug 31 10:00:14 2011 +0100 Added the Mac OS X version of the CellML 1.10rc1 binaries. commit afdaf839953946825f5f8bea46f4e7560576903c Author: Alan Garny '' Date: Wed Aug 31 08:46:48 2011 +0100 Added the Linux 64-bit version of the CellML 1.10rc1 binaries. commit 311eb815f6acbadd920b99807d35e30a39450d7a Author: Alan Garny '' Date: Wed Aug 31 08:45:21 2011 +0100 Added the Linux 32-bit version of the CellML 1.10rc1 binaries. commit 5cc0fd037f207f39c624b42bf3f75a37625c7cce Author: Alan Garny '' Date: Wed Aug 31 08:30:29 2011 +0100 Added the Windows version of the CellML 1.10rc1 binaries. commit cf64e84e5781fbaac40f1027564a8b91ce37295d Author: Alan Garny '' Date: Tue Aug 16 17:35:27 2011 +0100 Minor refactoring. commit c6c0ea99229ac88b3bae2fa8d69ac1ab4d5261e6 Author: Alan Garny '' Date: Tue Aug 16 17:32:54 2011 +0100 Cleaning up of code. commit 0f0d6bb5987731b5b5b1487a7526d9ff33bfe8b2 Author: Alan Garny '' Date: Fri Aug 12 18:34:51 2011 +0100 Removed uses of prepend for QList variables. In the end, this was counter-intuitive, so... commit d0a5722c94ee9e335173f79bb91bc4c787380d3f Author: Alan Garny '' Date: Fri Aug 12 17:46:03 2011 +0100 Some refactoring of GuiInterface: addAction was replaced by addMenuAction, since we may also want to add an action to a toolbar '(yet' to be coded 'up).' commit d85c79dc21badbeb1647916a8deeb93b51b125f0 Author: Alan Garny '' Date: Fri Aug 12 17:32:53 2011 +0100 Straightforward refactoring of the CentralWidget class. commit fb42451b3a66e2546f4124a126a1307790e9a833 Author: Alan Garny '' Date: Fri Aug 12 15:53:16 2011 +0100 Still working on a QTabBar+QStackedWidget solution. commit de1d66c2d5f22c1064d77f554c6d91ca840ccf34 Author: Alan Garny '' Date: Fri Aug 12 14:33:22 2011 +0100 Started work on not relying on TabWidget anymore, but on QTabBar for keeping track of the files that are opened and QStackedWidget to keep track of the different views associated to the different files. Note that '(Q)TabWidget' might sound like the obvious choice and it indeed would be if it was for the fact that a simulation view '(and' maybe an analysis 'view?)' should be common to ALL the files unlike an editing view, so... commit 65b7624f0c77c080f5c5937bed91c4808528861c Author: Alan Garny '' Date: Fri Aug 12 13:09:14 2011 +0100 Some more minor refactoring. commit ad3fc3dc7438bbd5bef75f0398fc0c7835245d25 Author: Alan Garny '' Date: Fri Aug 12 13:07:02 2011 +0100 Some more minor refactoring. commit 49b9cc518f30599fe0c4dd352aae277761b87a4e Author: Alan Garny '' Date: Fri Aug 12 13:00:30 2011 +0100 Minor refactoring. commit 36977ab7e3750d66d97305261e4436b040345d76 Author: Alan Garny '' Date: Fri Aug 12 12:30:48 2011 +0100 Modified the rest of OpenCOR to account for the renaming of CellMLXMLView to RawCellMLView. commit c026ffc4ef9b83e161a7dda95de2e514432853c2 Author: Alan Garny '' Date: Fri Aug 12 12:21:36 2011 +0100 Renamed the CellMLXMLView folder to RawCellMLView since 'it'\''s' more appropriate indeed. commit b9cb7b12740d34850c6cf4d69c5d0f31cb6524fb Author: Alan Garny '' Date: Fri Aug 12 12:17:43 2011 +0100 Decided to re-add the tab bar for the simulation views. Indeed, we may have a view for CellML simulations, SBML simulations, both CellML and SBML simulations, etc. I initially thought we could have one simulation view which would be completely independent of the modelling format used, but then how do we get the model from the model 'file?!' commit 2bf51052c67bf2679fa00a6b46c0507108470a49 Author: Alan Garny '' Date: Thu Aug 11 19:26:48 2011 +0100 Reworked some code after realising that, on Mac OS X, to change the language makes the mode tabs in the central widget to flash '(since' they used to be removed and re-added with the right 'translation).' commit f9c9f8137ba02f86c93e6c2a70dafd1f28b249d7 Author: Alan Garny '' Date: Thu Aug 11 17:21:38 2011 +0100 Reworked some code, so we can now have the view tab bar names translated. commit 41f10802adf0cefade2095cd2c6e4c6d30b0f325 Author: Alan Garny '' Date: Thu Aug 11 12:04:22 2011 +0100 The simulation mode can have only one view, so we 'don'\''t' a QTabBar for the 'simulation'\''s' ''\''views'\''.' commit 8e1756250e54270d03ae59cde18d2b3426db572d Author: Alan Garny '' Date: Sat Aug 6 19:00:57 2011 +0100 Fixed a small issue of flickering of the central widget on Mac OS X '(when' changing modes and therefore updating the 'views),' as well as fixed a small issue of showing/hiding the views the first time round. commit 82d226f5911b60aa97f7e8d8b908a1390e6383dc Author: Alan Garny '' Date: Sat Aug 6 16:52:38 2011 +0100 Minor fix to the last commit. commit 81a792a1ff4af9943951b0c7d12d6501b9a51716 Author: Alan Garny '' Date: Sat Aug 6 16:34:09 2011 +0100 Now have a QTabBar for each set of views '(i.e.' for the Editing, Simulation and Analysis 'modes)' and show it, depending on whether the corresponding mode is active. Can also handle the selection of a new mode. commit c45e250f8773aba34c801b2b01ec0e0494089364 Author: Alan Garny '' Date: Fri Aug 5 18:27:25 2011 +0100 Further work on supporting views in the central widget. commit 07168dae7d11e4f9cbf1eb54b55e1ccadf071706 Author: Alan Garny '' Date: Fri Aug 5 15:23:49 2011 +0100 Working towards having views supported '(in' addition to the modes which is now working 'fine)' in the central widget. commit 121fd07719d546ebfdf45930a838e95906b8834f Author: Alan Garny '' Date: Fri Aug 5 15:07:19 2011 +0100 Take advantage of our new GuiViewSettings class to enable a mode in the central widget. commit 01e74049f88cf4226d359e1c7a5835b1df93cbe6 Author: Alan Garny '' Date: Fri Aug 5 14:25:01 2011 +0100 Simple refactoring / cleaning up of code. Also added a new GuiViewSettings class so that we can allow plugins to declare a view for our main central widget. commit 701b3dc4377720691f4e6b9a245e05205d431acb Author: Alan Garny '' Date: Fri Aug 5 13:30:32 2011 +0100 The CellMLSimulation plugin now requires the Simulation mode to be active. commit 91805d8dbc98bf09d00a54d2b9d6304e3cb2f247 Author: Alan Garny '' Date: Fri Aug 5 11:12:57 2011 +0100 Only enable the 'File|Save' based actions if the Editing mode is active. commit 47b9deec264b85825cfcc222c5517b7f79b25a35 Author: Alan Garny '' Date: Fri Aug 5 11:02:00 2011 +0100 Moved some resources from the CoreEditing plugin to the Core plugin. commit d4cd7bae867a3d92b77eb8f3fed58cf7ab3baf3e Author: Alan Garny '' Date: Fri Aug 5 10:51:31 2011 +0100 Working towards having the File actions back in the Core plugin. Indeed, since we want to be able to simulate a file without first having to ''\''edit'\''' it. This means that we therefore need access to the 'File|Open,' etc. actions. commit f0f3f743e28c3590be574a66bb77b56b07d43585 Author: Alan Garny '' Date: Fri Aug 5 10:32:47 2011 +0100 Minor editing of an action title. commit b4199ef52aab8b464e64627b329e9cfc419d6c0a Author: Alan Garny '' Date: Fri Aug 5 10:15:41 2011 +0100 There is no reason why we 'couldn'\''t' simulate a CellML file without first having to ''\''edit'\''' it, so... commit 6faf0293ba94e862b7e57849fde7d89a3171c9a1 Author: Alan Garny '' Date: Thu Aug 4 20:40:31 2011 +0100 Fixed an issue with the error status for non-loaded plugins. commit b16b278bafcf30104fd19ba15ad6e726c6352422 Author: Alan Garny '' Date: Thu Aug 4 20:03:03 2011 +0100 Some heavy refactoring and work on making it possible for the Core plugin to determine which plugin requires which '(editing,' simulation or 'analysis)' mode, if any. Also some cleaning up here and there. commit 75a9ce4843bae28a1a8a4081e4d30abb7fe9001a Author: Alan Garny '' Date: Thu Aug 4 15:22:22 2011 +0100 Oops, we actually want to pass a list of the plugins that have been loaded, not all the plugins that are 'available!' commit 39e9995877fc92607fc8181d20c3928df21d7b1b Author: Alan Garny '' Date: Thu Aug 4 15:17:39 2011 +0100 Pass a list of all of the plugins to the initialze method of any plugin interface. commit 45b1edf24fc8c69b2a274142af5091aa459ae3af Author: Alan Garny '' Date: Thu Aug 4 11:21:08 2011 +0100 The CellMLSimulation plugin should require the CoreCellMLEditing plugin, not the CellMLXMLView plugin. Indeed, the latter would be too restrictive '(what' if the user is not interested in the CellML XML 'View?!).' So, instead, we should require the CoreCellMLEditing plugin. It would then be the CoreCellMLEditing 'plugin'\''s' job to let us know whether there is at least one view available, meaning that the user would then be able to open a CellML file and therefore simulate it. commit 0ae232a482e2a2505396ed049ef5e5147353373a Author: Alan Garny '' Date: Wed Aug 3 17:40:12 2011 +0100 Simple refactoring to use foreach rather than iterators. commit 5a9ca6cd877ba82c08ef4fdf79f805daaaad5acc Author: Alan Garny '' Date: Wed Aug 3 15:11:31 2011 +0100 Only accept the dropping/opening of files in the central widget if at least one mode is available. commit 278644c0c3b3f377374544f0157898e497c344ce Author: Alan Garny '' Date: Wed Aug 3 15:03:08 2011 +0100 Allow to enable/disable the editing, simulation and analysis modes in the central widget. commit 28d9d0b674e3631ec5554e2bbbbfe5791caaf23e Author: Alan Garny '' Date: Wed Aug 3 09:29:34 2011 +0100 Updated the description for the Viewer plugin. commit b1bdb23df76d4e6b9e58fb086cd2f9ad2597f001 Author: Alan Garny '' Date: Tue Aug 2 18:57:13 2011 +0100 Moved actions/menu from the Core plugin to the CoreEditing plugin. Also updated some resources. commit 68f073c62b89c55072ec7fdcc8797e953b74604c Author: Alan Garny '' Date: Tue Aug 2 17:48:37 2011 +0100 Simple refactoring for our TreeView widget. commit 7e5c1dca6c6dd777a7f677cf810e048c0eeb1ea5 Author: Alan Garny '' Date: Tue Aug 2 17:15:18 2011 +0100 Refactoring of code with the view of moving some of the Core plugin menus/actions to the CoreEditing plugin. commit 2793759d285a24c696f1a802f58b0dcac9076408 Author: Alan Garny '' Date: Tue Aug 2 16:43:25 2011 +0100 Some overdue cleaning up. of the GUI plugin interface. commit de28bd119dcccfe5765b9f9653d58c294f2a64e3 Author: Alan Garny '' Date: Tue Aug 2 15:48:33 2011 +0100 Argh, I 'can'\''t' be sure for certain what things are going to be like for the console side of OpenCOR when it comes to plugins. So, ok, 'let'\''s' not think too much about it for now. The code is completely modular anyway, so when the issue of the console of side of OpenCOR arises, it should be relatively straightforward to refactor our code, if necessary. This also means that for the time being, we only focuse of the GUI side of things, hence some plugin updates... commit e156137e3141608f7a5b3bfe8633b6ec3ffccd93 Author: Alan Garny '' Date: Tue Aug 2 15:33:42 2011 +0100 Forgot to remove some OpenCOR dependencies on the CellML and CoreSimulation plugins. commit 56bd71de80438fc4de2cb986b1ca089673fa126c Author: Alan Garny '' Date: Tue Aug 2 14:41:02 2011 +0100 Updated the Core plugin. commit ceb2f70f8c212b11e1bb3a64053a4fcf8bbf22e2 Author: Alan Garny '' Date: Tue Aug 2 14:38:44 2011 +0100 Updated the core simulation plugin. commit 2b3aed30fd20ad77f3b08d228b72377c2df920d4 Author: Alan Garny '' Date: Tue Aug 2 14:31:28 2011 +0100 Updated the dependencies of some plugins. commit c7f819c64ec86bec3124f6c8ee175f53c5204f04 Author: Alan Garny '' Date: Tue Aug 2 13:25:21 2011 +0100 We want the CellML plugin to be usable from the console version of OpenCOR. commit a1db81adbdfc710911caa855a9759e295b251917 Author: Alan Garny '' Date: Tue Aug 2 13:11:43 2011 +0100 Added the skeleton of some simulation plugins. commit 472b6c3846ebcceb04d7e79f2a110bae70892347 Author: Alan Garny '' Date: Tue Aug 2 12:55:18 2011 +0100 Minor update to our main CMakeLists.txt file. commit 08ed92860ddebc5d03f8c46f7cb7a847638616fc Author: Alan Garny '' Date: Tue Aug 2 12:39:20 2011 +0100 Updated the Qt dependencies of the newly added editing plugins. commit 3fb2e13a31a05e797d6411850efb8e9e138c950f Author: Alan Garny '' Date: Tue Aug 2 12:27:12 2011 +0100 Added the skeleton of further '(editing)' plugins: CoreEditing, CoreCellMLEditing and CellMLXMLView. commit 9dfd981feaf566d9b4e87b06b07c0a6d570ff123 Author: Alan Garny '' Date: Tue Aug 2 11:49:24 2011 +0100 Added, for Mac OS X, the Qt dependencies for the new CellML plugin. commit 54142eaa6e7d68e0e0d12ef97de21c9f620d39a1 Author: Alan Garny '' Date: Tue Aug 2 11:45:37 2011 +0100 Updated the developer documentation '(the' file 'structure).' commit b0df3b41cbca8e8af7f11d52517bea65da7af911 Author: Alan Garny '' Date: Tue Aug 2 11:39:58 2011 +0100 Added the skeleton of a CellML plugin. commit 417e2104ae17812c63df2f843657c151cd96f82a Author: Alan Garny '' Date: Tue Aug 2 11:24:43 2011 +0100 Updated the main CMake file as a result of renaming some plugin category folders. commit 5e0fa94951dbd4129678c8b8ff1f2bfa1598739e Author: Alan Garny '' Date: Tue Aug 2 11:19:36 2011 +0100 Oops, forgot to rename '[OpenCOR]/src/plugins/misc' to '[OpenCOR]/src/plugins/application...' commit c9ac3aa4c970c94c72707641f6e4a38d4bb52cbd Author: Alan Garny '' Date: Tue Aug 2 11:15:34 2011 +0100 Renaming '[OpenCOR]/src/plugins/edit' to '[OpenCOR]/src/plugins/editing' and '[OpenCOR]/src/plugins/organise' to '[OpenCOR]/src/plugins/organisation.' This to be in par with our different plugin categories. commit 1d3337fb20b2c0e0241b89aa2c684363fa21c5fe Author: Alan Garny '' Date: Tue Aug 2 10:11:31 2011 +0100 Removed, in the developer documentation, a statement about the manageability of plugins since a plugin '(e.g.' the forthcoming XML editing view for a CellML 'file)' may perfectly be managed by a user and yet be required by another plugin '(e.g.' the forthcoming CellML simulation 'plugin).' commit f00493c1587eb5b6850b32254c72a456b48b8618 Author: Alan Garny '' Date: Mon Aug 1 20:05:32 2011 +0100 I had forgotten to update the developer documentation... commit a933425ffa2e068dee0f960fef187dff7acf6dd7 Author: Alan Garny '' Date: Mon Aug 1 18:34:38 2011 +0100 Done with categorising plugins. commit c8ce4a7769264e8a78424f1c361640b5211fdb2a Author: Alan Garny '' Date: Mon Aug 1 17:35:53 2011 +0100 Added different plugin categories. commit 39f2090488c63afde4dc172493ffa4ec81afbdf2 Author: Alan Garny '' Date: Mon Aug 1 16:57:05 2011 +0100 Minor improvement to the plugins window. commit 6654ea972e7750b4f6cd226800cc59ca29012990 Author: Alan Garny '' Date: Mon Aug 1 16:48:48 2011 +0100 Some further work on the categorisation of plugins. commit 0265f970abc006947cf24ffc7bfecb40ffb732b8 Author: Alan Garny '' Date: Mon Aug 1 16:01:41 2011 +0100 Working on grouping plugins since we may end up with quite a few plugins. commit 856e73fa1b879e9353e2a9ee6331cb899d6c5533 Author: Alan Garny '' Date: Sun Jul 31 19:24:37 2011 +0100 Oops, forgot one 'change!' commit 519c744c4db95d55dfec5b593391d4a1596f4916 Author: Alan Garny '' Date: Sun Jul 31 19:22:20 2011 +0100 Minor updates to the documentation. commit f72d2e08f3d9811f086c81caac8d410b52638f15 Author: Alan Garny '' Date: Sat Jul 30 14:55:53 2011 +0100 Prevent the Core plugin from being managed by the end-user since there is really no reason for which it should be. commit 899c5ba01c62eaadfad8b4678bd40f8a402b4139 Author: Alan Garny '' Date: Sat Jul 30 12:34:16 2011 +0100 Simple refactoring of the code related to the Core plugin. commit 23722fa4e484aaa4cdc341f1ad7ae9da051ce46e Author: Alan Garny '' Date: Fri Jul 29 18:10:05 2011 +0100 Added the contents of our Edit menu for the Core plugin. commit 59e6398c2055777a2b1fc8fbea58d47d4022e88c Author: Alan Garny '' Date: Fri Jul 29 17:42:43 2011 +0100 Support the addition of menus for the Core plugin, and added an Edit menu. commit 7c1d6deb0bb7d58044cec3431ae4a974d1189090 Author: Alan Garny '' Date: Fri Jul 29 16:16:29 2011 +0100 Working towards making the Core plugin fully operational. Fixed a small issue with the visibility of the modes and views tab bars not being initialised in the central widget. commit 4da1b4c1319c2bcf75ac0e0da64644d6395a0d16 Author: Alan Garny '' Date: Fri Jul 29 13:54:57 2011 +0100 Hmm... the last commit 'doesn'\''t' quite work as expected on Linux and Mac OS X, so... commit f78ba78dacda982724105b2d96c56d277e10d1a1 Author: Alan Garny '' Date: Fri Jul 29 13:49:52 2011 +0100 Minor editing. Also show/hide the modes and views tab bars depending on whether files are opened in the central widget. commit d82c77e29034f3fd3092330cf593c75ed9b64db2 Author: Alan Garny '' Date: Fri Jul 29 13:02:13 2011 +0100 There had to be a stupid reason for the translation problem with the modes tab bar in the central widget and indeed... there 'was!' commit ce72adf512aae1be2cf9da86ee466b370b94be62 Author: Alan Garny '' Date: Fri Jul 29 12:29:17 2011 +0100 Minor improvement to the central widget. commit 09ff864a89d657ded7b9d89b6e8d900319ee1ba9 Author: Alan Garny '' Date: Fri Jul 29 12:24:05 2011 +0100 Still experimenting with the central widget. '(Note:' there is something going on with the translation of the modes tab bar. First time round, English translations are used, then after switching to French, we still have English translation, but then after switching back to System '(i.e.' English on my 'system),' we get French 'translations!)' commit 3b1ab647ca635092cfecc59611b9cb3a25ea81bd Author: Alan Garny '' Date: Fri Jul 29 10:34:33 2011 +0100 Testing things further with the central widget. commit b998077311f666290ba4091a8b4c9d2a506b3136 Author: Alan Garny '' Date: Thu Jul 28 17:59:47 2011 +0100 Experimenting with the GUI for the different modes: editing, simulation and analysis. commit 8930a23826d561e9bdad95f1c3ab312d927cba60 Author: Alan Garny '' Date: Thu Jul 28 16:58:41 2011 +0100 Only allow to accept/apply the plugins window if the loading state of a plugin has changed. commit 0f2a61fd76e112710596cdf20aff743005360d5e Author: Alan Garny '' Date: Thu Jul 28 16:03:59 2011 +0100 Can now apply changes to the loading state of plugins. This means that we get told that this involves restarting OpenCOR. If the user agrees to it, then 'OpenCOR'\''s' settings are saved and OpenCOR restarted. commit 935862ce65809ee2bfe4cea052e0674dc50cb32c Merge: 90e23362e 67d022b1d Author: Alan Garny '' Date: Thu Jul 28 14:05:56 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 90e23362ebd942756e66e59a3f1b26c69d853b98 Author: Alan Garny '' Date: Thu Jul 28 14:05:21 2011 +0100 A bit of refactoring with regards to the plugins. commit 67d022b1d6d0c14d9465cc3ca93768f8b09a3ca9 Author: Alan Garny '' Date: Tue Jul 26 19:59:43 2011 +0100 Another minor update to the developer documentation. commit 31d5aeb934fa0cd8a493068bffdf2dac4195576f Author: Alan Garny '' Date: Tue Jul 26 19:58:14 2011 +0100 Minor update to the developer documentation. commit 3ed91f9afdd3c0b282e47146d17cdc33d85dc07e Author: Alan Garny '' Date: Mon Jul 25 19:52:12 2011 +0100 'Don'\''t' add a border to the tab widget '(in' the central 'widget)' if on Mac OS X. commit c2e94681730cb8aaf937c91f91d0a5001959ec47 Author: Alan Garny '' Date: Mon Jul 25 18:42:10 2011 +0100 Removed the dependency on QtSvg. commit 268456f172b5cf88952a642ad48c62a03b5b8013 Author: Alan Garny '' Date: Mon Jul 25 18:40:23 2011 +0100 Something I 'hadn'\''t' realised when it comes to SVG is that 'it'\''s' quite CPU intensive to render '(not' surprisingly I 'guess)' and this is somewhat noticeable when resizing the main window which then resizes the central 'widget'\''s' tab widget and therefore re-renders the logo if there is no document opened. So, we are dropping the idea of SVG for this and reverting to a QPixmap which we 'don'\''t' resize when there is not enough space to see all of it '(i.e.' it 'doesn'\''t' look ''\''ugly'\''' as it used to be when 'shrunk).' In the end, I think we have a better solution, so 'that'\''s' good. We will, however, have to remove our dependency on SVG for now... commit 0500d4b4473731e43c87e0324bfa40e3fb7ae797 Author: Alan Garny '' Date: Mon Jul 25 14:59:36 2011 +0100 Make sure that the logo in the tab view never ends up with dimensions of '(0,' '0)' which would be equivalent to using all of the viewport to render the logo '(which' is clearly not what we 'want!).' commit 8a2cd1625d8a87f21e9a2e3201324d106c26e9ff Author: Alan Garny '' Date: Mon Jul 25 13:55:36 2011 +0100 Reorganised the plugin code a bit, so that we now consider the Core and Help plugins as special plugins that need special treatment '(as' opposed to generic 'treatment).' commit b5049d56307b9387effe89f2fb8ef40a72b13b4b Author: Alan Garny '' Date: Sun Jul 24 20:00:20 2011 +0100 Edited the SVG version of our OpenCOR logo in Inkscape and added a shadow by ourselves. Then, cleaned up the SVG code and updated the PNG version for the website. commit 770a0f826e83c01167a626ad92ba09154c615fad Author: Alan Garny '' Date: Sun Jul 24 19:18:48 2011 +0100 Slight improvements to the SVG and PNG versions of the OpenCOR logo. commit b91a0dbde5357bb3310b2ae38cc303cbbaac5343 Author: Alan Garny '' Date: Sun Jul 24 19:02:32 2011 +0100 Removed a now unnecessary file. commit 25ec0296890f31276b58437e020ee2c01214a28d Author: Alan Garny '' Date: Sun Jul 24 03:55:50 2011 +0100 Slight update to the 'website'\''s' homepage. commit 6fd2fa3e629c5aec0e423e883e22ab86848d4bff Author: Alan Garny '' Date: Sun Jul 24 03:21:34 2011 +0100 Minor update to the developer documentation. commit 4923102bad4d6c9872556b0d8608a247e04af872 Author: Alan Garny '' Date: Sun Jul 24 03:13:30 2011 +0100 Updated the packaging for Mac OS X. commit eee3a93e4f8bbdf1a63bcf847da17ca0bed10983 Merge: dad01b43c 68c1eee58 Author: Alan Garny '' Date: Sun Jul 24 02:56:26 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit dad01b43c7c1ce868c800b2b6235d12db6726bfd Author: Alan Garny '' Date: Sun Jul 24 02:55:51 2011 +0100 Minor update to the 'developer'\''s' documentation. commit 68c1eee58713a06d062492ab0849d8b1d2258fb1 Author: Alan Garny '' Date: Sun Jul 24 02:35:42 2011 +0100 Updated the packaging for Linux '(following' our use of 'QtSvg).' commit 6368fdc4c8f846967db3aba82a79b3d6498b3514 Author: Alan Garny '' Date: Sun Jul 24 02:24:51 2011 +0100 Updated the general documentation '(i.e.' the 'website'\''s' 'homepage)' by adding a PNG version of a shaded SVG version of our logo '(Note:' we 'don'\''t' use the SVG version itself because some browsers, e.g. Chrome, 'don'\''t' render it 'properly).' Now use a SVG version of our logo in TabWidget since it obviously scales much better than a raw image. Note that this means that we now need QtSvg when deploying OpenCOR. This has been dealt with for Windows, but still needs to be done for Linux and Mac OS X. commit 6a2104212677ef020c6dc1a90138844183a7cb94 Author: Alan Garny '' Date: Sun Jul 24 00:21:27 2011 +0100 Minor cleaning up. commit cc9f9a428dd6e956bb33032131791d30ead0a70e Author: Alan Garny '' Date: Sat Jul 23 17:22:49 2011 +0100 The algorithm for resizing the logo in TabWidget was wrong, so... commit aa2c909104b80f953303fedef0a8510d19aca1ae Author: Alan Garny '' Date: Sat Jul 23 15:50:02 2011 +0100 Minor fix for the resizing of the logo in TabWidget. commit 01dd8534bc089179c1d11fc215919130c4e79552 Author: Alan Garny '' Date: Sat Jul 23 14:59:08 2011 +0100 Some simple refactoring for TabWidget. commit c8180c49291974338fa324c28c1528212f8ed5ec Author: Alan Garny '' Date: Sat Jul 23 04:00:44 2011 +0100 Resize the logo if it 'doesn'\''t' fit in the central widget. commit 67cc244c18d2d41774cb0484f8c3af4972547154 Author: Alan Garny '' Date: Fri Jul 22 20:21:05 2011 +0100 Starting work on making the Core plugin effective within OpenCOR. commit 93acde0558ee031a102e4df2c8e9f1163f9d933b Author: Alan Garny '' Date: Fri Jul 22 12:38:36 2011 +0100 Include the build directories, so that we can from Qt Creator access the UI header files '(e.g.' '[OpenCOR]/build/ui_mainwindow.h).' commit 3fbe8688aa0f344d4d175984e4dec744f4992025 Author: Alan Garny '' Date: Thu Jul 21 23:27:21 2011 +0100 Minor update to the developer documentation '(as' a result of installing Qt Creator 2.2.1 at some point in the 'past?)' commit aa163535d9701fcb051d7749fb696f724aec892a Author: Alan Garny '' Date: Thu Jul 21 08:46:19 2011 +0100 Minor update to the developer documentation. commit 44808134482170c18334d4ca5a7a3a176181a255 Author: Alan Garny '' Date: Thu Jul 21 01:31:38 2011 +0100 Updated the documentation following our upgrade to Mac OS X 10.7 '(Lion).' commit 958b9c8085546ee0364dd3d70ff6dae6f518e724 Author: Alan Garny '' Date: Wed Jul 20 19:31:46 2011 +0100 Fixed issue '#44' related to the full screen mode. commit 437fcf5c088c76b70a462c5d6c4d41b34c589590 Author: Alan Garny '' Date: Mon Jul 18 10:23:49 2011 +0100 Changed the icons used in the plugins window. commit f63fad002200a671e34766d03f73c50d3559d76f Author: Alan Garny '' Date: Sun Jul 17 17:04:39 2011 +0100 While working on the plugins, I thought it would be a good thing, on Windows, to move the SQLite driver to our plugins folder '(i.e.' '[OpenCOR]/plugins/sqldrivers' rather than '[OpenCOR]/bin/sqldrivers,' since all of our OpenCOR plugins are under '[OpenCOR]/plugins/OpenCOR).' What I had forgotten is that, by default, Qt looks for non-OpenCOR plugins in '[OpenCOR]/bin' '(or' wherever OpenCOR.exe is 'located).' So, that meant that when running a deployed version of OpenCOR, we 'couldn'\''t' see the help. In the end, all that was required, for Windows, was to add '[OpenCOR]/plugins' to our 'OpenCOR'\''s' library path. commit a854db93a71c20162ccf2eae8841c98dd01e4b0d Author: Alan Garny '' Date: Sun Jul 17 16:44:16 2011 +0100 Some minor cleaning up. commit aa28b7a3a2201aca6b00090b03fbb4dca533054c Author: Alan Garny '' Date: Sun Jul 17 16:39:24 2011 +0100 Fixed a minor issue in the user documentation for use in OpenCOR. commit 50144ef25be58eecd23e4e0dd90eefd194c6ab0a Author: Alan Garny '' Date: Sun Jul 17 16:01:37 2011 +0100 Minor cleaning up. commit a5524472a59287d37b85bedf5b7987500fb7b38f Author: Alan Garny '' Date: Sun Jul 17 12:45:11 2011 +0100 Reverting the type of icon to show for a plugin in the plugins window. In the end, it only makes sense to have a ''\''tick'\''' if the plugin has been loaded. Also fixed a small issue with console-type plugins. Even though they are manageable, they 'shouldn'\''t' be checkable. commit 8f87f4b72030a2ba87486e0bf0e8a4ac80a6a40e Author: Alan Garny '' Date: Sun Jul 17 12:33:17 2011 +0100 Minor improvement to the plugins window. commit 022288f81d5e23c9e233199d0dcc4df6b05a96da Author: Alan Garny '' Date: Sun Jul 17 12:24:17 2011 +0100 Fixed another small problem with the plugins window '(when' a general plugin is not 'wanted).' commit eb3b5e5b6197f3ffcd6c15ffca97854ff7628238 Author: Alan Garny '' Date: Sun Jul 17 12:12:26 2011 +0100 Minor fix to the plugins window. commit 389d98fc779df403551cba8a18fbc95df8b06c0c Author: Alan Garny '' Date: Sun Jul 17 11:54:46 2011 +0100 Display a warning message if we want to open the plugins window, but no plugin could be found. This is indeed better than showing the plugins window, since its contents would look rather odd '(since' no plugin would be 'listed...).' commit 5041e92af0f30a15be789cf7b7721f57973dc11a Author: Alan Garny '' Date: Sun Jul 17 00:46:13 2011 +0100 Show an icon which, at first glance, indicates whether a problem occurred or not when trying to deal with a given plugin. commit 29f4b05d56fe568c9135bbc609b1adf286f9b4cc Author: Alan Garny '' Date: Sun Jul 17 00:10:53 2011 +0100 Updated the developer documentation following. Some cleaning up. commit dfde6f38cee0a4b8850bac0aaf89808c9e01f5fc Author: Alan Garny '' Date: Sat Jul 16 23:51:32 2011 +0100 Implemented a mechanism by which a plugin must specify the version of the interface that it uses. This way, 'OpenCOR'\''s' plugin manager can check that a plugin is compatible with the version used by OpenCOR, and can therefore be loaded '(or' 'not!).' commit f7f083202ffbbecc4dd0338d76d0a1ea8a80c99d Author: Alan Garny '' Date: Sat Jul 16 20:04:09 2011 +0100 Minor editing. commit a5bc2d24d7e2107190e4367b2fc64abae9dd79b6 Author: Alan Garny '' Date: Sat Jul 16 19:55:55 2011 +0100 Minor editing. commit 34e29a7fcd4ca0df696871469eab7d6e1523321d Author: Alan Garny '' Date: Sat Jul 16 19:45:40 2011 +0100 Done with allowing all the plugins, except those that really 'don'\''t' bring anything at all when loaded on their own '(e.g.' the QScintilla 'plugin),' to be managed by the user. commit 53c21b9164254661f3b0c71aad477348f6538b3a Author: Alan Garny '' Date: Sat Jul 16 19:37:59 2011 +0100 Minor reformatting. commit afcacd2ae6d0a49f8851800b63a1a73a7d65a7ef Author: Alan Garny '' Date: Sat Jul 16 10:17:31 2011 +0100 Working towards allowing all the plugins, except those that really 'don'\''t' bring anything at all when loaded on their own '(e.g.' the QScintilla 'plugin),' to be managed by the user. commit 82b11d1a631d057bce39c96ac646285360662096 Author: Alan Garny '' Date: Fri Jul 15 18:40:47 2011 +0100 Minor editing. commit 5f1133e75a0c0ec779e92d6e5d76bc4d34ba5aba Author: Alan Garny '' Date: Fri Jul 15 18:39:00 2011 +0100 Can now load/save a 'plugin'\''s' settings. commit a4ec2756df5ff7dcb0b0c388d2e8560c0e04528f Author: Alan Garny '' Date: Fri Jul 15 17:54:46 2011 +0100 Working towards the loading/saving of a 'plugin'\''s' settings. commit b3d95f091482d740186d38ed0a9f74be0a44ec83 Author: Alan Garny '' Date: Fri Jul 15 17:25:35 2011 +0100 Minor adjustment for Linux and Mac OS X. commit 2f3e5db68712ef91f37e6ed797063b3a9afb15ca Author: Alan Garny '' Date: Fri Jul 15 17:14:33 2011 +0100 Some simple refactoring and cleaning up. commit 247b01050a8042ec8322860e207b4863d79c6535 Author: Alan Garny '' Date: Fri Jul 15 14:20:02 2011 +0100 Handle the showing/hiding of the help window through the help 'plugin'\''s' action. commit 986ba6612c582fdf8f50dd930b5565543dd25276 Author: Alan Garny '' Date: Fri Jul 15 14:09:42 2011 +0100 Can now add a plugin action to a menu and/or a tool bar, and have done it for the Help plugin. Will next need to make the action active. Some minor cleaning up. commit d7c0faeb25d9b53dc3d53376d74a292be433e212 Author: Alan Garny '' Date: Thu Jul 14 18:38:40 2011 +0100 Working on allowing the plugin to specify actions that are to be incorporated in OpenCOR. commit 6d32520db7c0e1d8ea95eb928d5f98fc5b60d6bd Author: Alan Garny '' Date: Thu Jul 14 18:05:16 2011 +0100 Minor cleaning up. commit 3c08b1e0df58b54742af77609870a1aec6ab0a55 Author: Alan Garny '' Date: Thu Jul 14 17:42:21 2011 +0100 Reverted my idea of moving the UI side of MainWindow in MainWindow itself. This 'wouldn'\''t' have solved anything '(unfortunately),' since to access to the contents of MainWindow, we would need to have it part of the Core plugin '(if' 'anything)' which is clearly not an 'option!' commit e7a649d8e367c86a5e0e9655e4e1b537767f82fc Author: Alan Garny '' Date: Thu Jul 14 17:26:38 2011 +0100 Now have our plugins translated when switching languages in OpenCOR. commit ec087d4312056cb9e0b3822b31ea461bb73ff5f7 Author: Alan Garny '' Date: Thu Jul 14 13:27:10 2011 +0100 Started work on moving the UI side of MainWindow in MainWindow itself, as opposed to having it in mainwindow.ui. The idea is that this will allow plugins to access 'OpenCOR'\''s' GUI in a ''\''simple'\''' way. commit ebefb1c39ecf947187576d035263aa48421b6da0 Author: Alan Garny '' Date: Wed Jul 13 18:26:24 2011 +0100 Oops, reverted something that I should have 'reverted!' commit 5d2e19091a40663c2aa29227b1b209e14a86dd44 Author: Alan Garny '' Date: Wed Jul 13 18:22:00 2011 +0100 Minor improvement by passing a MainWindow object rather than a QMainWindow object to GUI plugins. commit 8f42a00a06279a0b2708e2b7e745729aec0b8316 Author: Alan Garny '' Date: Wed Jul 13 17:39:55 2011 +0100 Minor improvements to our Help plugin. commit 263d501acbcfc60e3c422e847431127c38ee1919 Author: Alan Garny '' Date: Wed Jul 13 17:33:11 2011 +0100 Some cleaning up. Also fixed some issues with the help '(which' we 'couldn'\''t' test earlier, but now can since the Help plugin can be 'loaded).' commit 83715e332be9febb1c495832ab1bbd09e97d92bd Author: Alan Garny '' Date: Wed Jul 13 17:24:45 2011 +0100 Minor translation update. commit 6c97514069e6b8aa9adf02ea426ce4543539e456 Author: Alan Garny '' Date: Wed Jul 13 16:04:35 2011 +0100 Improved the plugins window. commit e22cd23f1b112b75a037300fcb3f3487481348a8 Author: Alan Garny '' Date: Wed Jul 13 15:36:55 2011 +0100 Only load the plugins that the user wants to load. Handle the checking/unchecking of plugins from the plugins window. commit 4454863bdf37119f0c04ef5da38de1daa42ea5eb Author: Alan Garny '' Date: Wed Jul 13 10:54:04 2011 +0100 Very minor refactoring. commit e0ffb514e3179f5d59c73772add134dcd2337407 Author: Alan Garny '' Date: Wed Jul 13 10:33:40 2011 +0100 Fixed an issue with the size of the plugins window. commit cfe2d8ed1ac1f7f129df53317c417d9cbaf5104a Author: Alan Garny '' Date: Wed Jul 13 10:10:09 2011 +0100 Updated a comment about ordering the loading of the plugins, now that things have been tested on Mac OS X. commit efc0370f9c315694c1f786c984e8db0c054ff49e Author: Alan Garny '' Date: Tue Jul 12 17:57:22 2011 +0100 Working towards handling changes made by the user to the plugins window. commit 7f49e34630e6ce0a11ff6eacdfabfd8e0346556d Author: Alan Garny '' Date: Tue Jul 12 17:01:43 2011 +0100 Some cleaning up. commit a4c405a3a5940500b6c583f3124d889e7188f722 Author: Alan Garny '' Date: Tue Jul 12 15:48:26 2011 +0100 Further work on the windows plugin. Now, we can retrieve whether a plugin should be shown as being to be loaded. commit 4cfe4df5c00464f38684be6baf20bba1f22eb6b7 Author: Alan Garny '' Date: Tue Jul 12 14:57:11 2011 +0100 Minor improvement to the plugins window. commit 2e3a39fc5bcec532a0bc33590931e740a1bc68aa Author: Alan Garny '' Date: Tue Jul 12 14:38:39 2011 +0100 List missing plugin dependencies, should there be any. Also ensure that plugins are loaded in the right order '(i.e.' respect the 'plugins'\''' 'dependencies).' commit 8c8307da8cde8fe1dfbb50cdd96521457743d860 Author: Alan Garny '' Date: Tue Jul 12 13:50:55 2011 +0100 Check, on Linux and Mac OS X, that a 'plugin'\''s' dependencies have been loaded. commit 19352f0b63ac7136596b5d4e8127c132b44d6a71 Author: Alan Garny '' Date: Tue Jul 12 13:18:21 2011 +0100 Slight improvements to the plugins window. commit a759466cbb8d0f7f406f89b9c38eaeeb388e2a04 Author: Alan Garny '' Date: Tue Jul 12 12:25:46 2011 +0100 Improved the status description of a plugin in the plugins window. commit 6be3711ac5f44ac46776953b54385d3c0601b117 Author: Alan Garny '' Date: Tue Jul 12 11:43:02 2011 +0100 Some more work on the plugins window by adding the status of a plugin. commit f3736e89b09609d1a932c122be25920ae05b7bad Author: Alan Garny '' Date: Mon Jul 11 23:23:02 2011 +0100 There is a strange issue with the word-wrapping of the description value in the plugins window. If the description requires several line, then widening the window should normally get the description to fit on one line. However, all that happens is that line 2..n eventually disappear and the first line only contains the text that was there in the first 'place...!?' commit dd97f2cb51daea858d569fa66fa6b2189a5ed7b6 Author: Alan Garny '' Date: Mon Jul 11 22:50:21 2011 +0100 For some reasons, the C++ compiler on Mac OS X 'doesn'\''t' like our direct use of QMap for the default value of pDescriptions in the PluginInfo constructor '(in' 'src/plugins/plugininterface.h),' so... we defined a type for it and now 'everything'\''s' fine. commit efa73148d4341b009f615fe3581c6776ec5eb8a4 Author: Alan Garny '' Date: Mon Jul 11 15:03:03 2011 +0100 Updated the developer documentation with regards to plugin development. commit c91f6d378372823afff01870e6f895d467c74882 Author: Alan Garny '' Date: Mon Jul 11 14:23:58 2011 +0100 Some minor simplification to our common.cmake file. commit 79c13e45a66ea05b30b5447be31f517207682e06 Author: Alan Garny '' Date: Mon Jul 11 13:46:59 2011 +0100 Some cleaning up following our slight change of strategy for the translation of 'plugins'\''' descriptions. commit 9137f3d2106e6dc56140e18d8ce0304118396333 Author: Alan Garny '' Date: Mon Jul 11 12:56:07 2011 +0100 Changed the way a language-specific description of a plugin is obtained. Indeed, I initially thought of taking advantage of 'Qt'\''s' translation feature, but having thought more about it I cannot see how it could be applied in the case of our 'PluginInfo()' function which is available from the plugin file, but is not part of the plugin itself. So, instead, the different translations of a 'plugin'\''s' description are in the 'plugin.cpp' file as a map of descriptions which can then be used to retrieve the right description based on the 'application'\''s' locale. Note that for the plugin itself, we should definitely be able to take advantage of 'Qt'\''s' translation feature... commit 6891c546e4eea2f544c6ce02333db205c524cb80 Author: Alan Garny '' Date: Sun Jul 10 01:20:13 2011 +0100 Addressed the issue of native vs. non-native painting of a plugin item in the plugins window. commit 91336f86e22f782733ed03f92012442c44bebf62 Author: Alan Garny '' Date: Sun Jul 10 00:39:35 2011 +0100 Can now see the information of all the plugins in the plugins window. However, the selection of a plugin item 'doesn'\''t' look as as good '(on' Windows at 'least)' as before when were not using a delegate. Why is 'that?!' Otherwise, did some minor cleaning up. commit d204fc8f1c9412739c7c58e820fea300c621c0cc Author: Alan Garny '' Date: Sat Jul 9 19:29:23 2011 +0100 Minor improvement to the plugins window. commit c4f3b63e058e6432c83640c239efa0be326d7d3e Author: Alan Garny '' Date: Sat Jul 9 17:52:55 2011 +0100 Handle the activation of a link in the description of a plugin in the plugins window. Minor improvements to the plugins window too. commit f79960c2df5be7e7e18d1fc5fcc3f64e18141406 Author: Alan Garny '' Date: Sat Jul 9 17:34:42 2011 +0100 Refined the plugins window. Getting there... with a first ''\''draft'\''' of it... commit e99c042a04a3bb836236a92d7b5e823e91d14d52 Author: Alan Garny '' Date: Sat Jul 9 17:05:12 2011 +0100 A bit more work on the plugins window. commit aac83269df470dcf37f4fa00921cbbf4cb555660 Author: Alan Garny '' Date: Sat Jul 9 15:32:35 2011 +0100 Worked some more on PluginsWindow. commit 498d51cbb2d620fdf6b79bc463b59447cd09bc0c Author: Alan Garny '' Date: Fri Jul 8 19:57:11 2011 +0100 Prevent the list of plugins in PluginsWindow from being edited. commit f3f98f541bc489fa7f9d79d6eebeb9a42a3e8d06 Author: Alan Garny '' Date: Fri Jul 8 18:03:56 2011 +0100 Some work on the plugins window. Some minor cleaning up. commit a879db37c0bf0918557dd1d32faadb9c9bf91e15 Author: Alan Garny '' Date: Fri Jul 8 15:49:51 2011 +0100 Added a description for the plugins. This involved a bit of reworking since translations are now required for all the plugins. Updated the developer documentation with regards to plugin development. Remved the CellML plugin, since we are not making use of it at this point '(indeed,' 'it'\''s' 'empty!).' commit 1268632dca0ec8bceaeed5e75d1f5677a61edb52 Author: Alan Garny '' Date: Fri Jul 8 11:27:30 2011 +0100 Improved the default contents CheckForUpdatesWindow, PluginsWindow and PreferencesWindow. commit 5dfd3244527bbe74047c343cd578ed58754e6a9c Author: Alan Garny '' Date: Fri Jul 8 10:51:38 2011 +0100 Made the GUI Interface inherit from our Plugin Interface. Also some cleaning up. commit ac169c0c71f134b5b399da84a5e792432a594827 Author: Alan Garny '' Date: Thu Jul 7 17:35:08 2011 +0100 Minor update to the documentation. commit c913111ab5c4f8eb66c2ceb3031c3df3d98c27d5 Author: Alan Garny '' Date: Thu Jul 7 16:59:03 2011 +0100 Made the check for updates window accessible from the GUI. commit 55213593d2d3611cddb59d322d43ef77eff31c42 Author: Alan Garny '' Date: Thu Jul 7 15:53:39 2011 +0100 Made the plugins window accessible from the GUI. commit 267d92eb6ad8ad2c23965b0de459d8be8e2a8335 Author: Alan Garny '' Date: Thu Jul 7 15:43:14 2011 +0100 Made the prefererences window accessible from the GUI. commit 833aa7f7ad192ba8878fc8361b8a89924545c6a4 Author: Alan Garny '' Date: Thu Jul 7 15:23:48 2011 +0100 Moved the CheckForUpdatesWindow, PluginsWindow and PreferencesWindow to OpenCOR itself. Same reasons as for the last couple of commits. commit cc498eae60dba7fdcee41414a4dd5c4f344803c5 Author: Alan Garny '' Date: Thu Jul 7 11:44:02 2011 +0100 Moved the MainWindow code one directory up, and updated the documentation accordingly. commit bbe2ca8c2a209e7a86ef1175f396ebd436b6a07c Author: Alan Garny '' Date: Thu Jul 7 11:31:47 2011 +0100 Moved the version manager back to OpenCOR itsel, as opposed to having it as a plugin. Indeed, since we may very well run OpenCOR withuot any plugin at all, we might want to have the version manager to be part of OpenCOR itself, so we can update things, if necessary. commit 3a28bbd4837be4b44632b072aa6779674c898085 Author: Alan Garny '' Date: Wed Jul 6 22:36:26 2011 +0100 Now, only load the plugins and their dependencies, and not the plugins that are not required. commit 46efe23a8be00c04ab18f697a57ff6194762e257 Author: Alan Garny '' Date: Wed Jul 6 20:07:25 2011 +0100 Minor cleaning up. commit 9767867024d11f5ce3805803f526c55d8215f95c Author: Alan Garny '' Date: Wed Jul 6 19:56:13 2011 +0100 Some simple refactoring. Working towards only loading the plugins that are necessary, i.e. self-contained plugins are only loaded if actually needed. commit 7123c2b621ae68861efe31b242a739e09cbee1f6 Author: Alan Garny '' Date: Wed Jul 6 18:44:01 2011 +0100 Playing yo yo, i.e. removed the manageable property for plugins, since '(currently,' at 'least)' if a plugin 'doesn'\''t' have any dependencies, then there is no need to load it, unless 'it'\''s' required by a plugin that is to be loaded. Also reintroduced the Plugin::name, Plugin::fileName and Plugin::info functions, since they are going to be useful to determine which self-contained '('\''unmanaged'\'')' plugin should be loaded. commit d49e39dfa8e63927732f3d8c6b8bec8c4be9d676 Author: Alan Garny '' Date: Wed Jul 6 17:38:16 2011 +0100 Specify whether a plugin can be managed by the user. For example, the Core plugin cannot since it should only be loaded if actually needed by another plugin. On the other hand, the Help plugin can be managed, since the user should be allowed to decide whether to have it loaded. commit e48ea4993207b29e6c2de963d1b6ed6e3cfe1c24 Author: Alan Garny '' Date: Wed Jul 6 17:08:45 2011 +0100 Worked some more on the plugins. commit fb66626dcdf1d32906b7ebb3db824fc55e334e89 Author: Alan Garny '' Date: Wed Jul 6 12:03:19 2011 +0100 Further update to the 'user'\''s' documentation. commit 55c23de6371f644b36eb5c2c39dca904b1e79cd2 Author: Alan Garny '' Date: Wed Jul 6 11:55:18 2011 +0100 Minor update to the 'user'\''s' documentation. commit ca5637db423a223c8c4addbadd02184724318baf Author: Alan Garny '' Date: Wed Jul 6 11:50:47 2011 +0100 Added an initialize and a finalize method to the plugin interface. commit 8642d8f203c8cd5acea41e5d5444b8c4a3a7370b Author: Alan Garny '' Date: Wed Jul 6 11:09:08 2011 +0100 Plugins are now in their own namespace. Updated the 'developer'\''s' documentation. commit 9488d764cf4d52f5d7bedc04e5aa978070ae657f Author: Alan Garny '' Date: Wed Jul 6 09:12:41 2011 +0100 Make sure that, on Windows '(note:' it 'doesn'\''t' apply on Linux and Mac OS 'X),' our plugins refer to either the debug or release version of the Qt libraries, depending on the version of OpenCOR we want to build. commit aae8aa02f9c1b752493808ad14ed522b72b793c3 Author: Alan Garny '' Date: Tue Jul 5 19:19:10 2011 +0100 Ok, the only reason our call to QMessageBox::information from the GUI 'interface'\''s' setupUi method 'wasn'\''t' working was because I had a ''\''dirty'\''' build environment. To do a clean build solved the problem. 'Doh!' commit 75261f6a6e0019845737a38dd080f79c1a37a016 Author: Alan Garny '' Date: Tue Jul 5 17:54:38 2011 +0100 Removed some debug traces. commit 9ecd4b8da15864278dfc87b338d36ddb32861107 Author: Alan Garny '' Date: Tue Jul 5 17:49:24 2011 +0100 Found out why the plugins 'wouldn'\''t' work. I had forgotten to add 'Q_INTERFACES(OpenCOR::GuiInterface)' in their class definition. Otherwise, our call to QMessageBox::information from the GUI 'interface'\''s' setupUi method 'doesn'\''t' 'work...?!' commit b966dfe4223c5c8a5974549ea1127524d0a4d3eb Author: Alan Garny '' Date: Tue Jul 5 16:55:02 2011 +0100 Simple refactoring. Also added a GUI interface so that our plugins can start being useful. 'It'\''s' not working at the moment though, so I am clearly still missing something here... commit bdea7dc578da44b3ec866263b7536a4070fb69c8 Author: Alan Garny '' Date: Tue Jul 5 15:05:28 2011 +0100 Minor update. commit 661182aff12f18ed3656b5d57960831ee7a2cb12 Author: Alan Garny '' Date: Tue Jul 5 14:28:36 2011 +0100 Getting there with the loading of plugins... I think, I 'hope!' commit 628a5708465eeceb2eb5c3cec1cd702228a875c9 Author: Alan Garny '' Date: Mon Jul 4 18:11:02 2011 +0100 More minor refactoring. commit 078605cabc3963b409ae12edf2087072a2fe987a Author: Alan Garny '' Date: Mon Jul 4 18:06:00 2011 +0100 Minor refactoring. commit dfaa518fc7f9511c889dd0c2cd0680fe0c15716b Author: Alan Garny '' Date: Mon Jul 4 17:45:48 2011 +0100 Simple refactoring. commit d5dc7d6a3c5187f68bfcb90094847771b5997157 Author: Alan Garny '' Date: Mon Jul 4 13:55:37 2011 +0100 Some cleaning up, now that we are pretty much done with the loading itself of plugins. commit 803ab87a4a89abe5f15791b5b8c4cd0b3e10eb4f Author: Alan Garny '' Date: Mon Jul 4 13:46:11 2011 +0100 Hmm... ok, all that business about extracting '(from' the PE 'header)' a 'plugin'\''s' dependencies, etc. is not 'necessary!' All that was required was to set the current directory to that of the plugins folder '(!!).' commit a823bc487880b65cd129e0b117a95c5a963ee3a7 Author: Alan Garny '' Date: Sun Jul 3 19:19:47 2011 +0100 Can now, on Windows, determine a 'plugin'\''s' dependencies '(from' the PE 'header).' Check 'http://www.qtcentre.org/threads/42849-Plugin-can-load-or-not-depending-on-whether-my-app-is-launched-from-Qt-Creator-or-not?p=196011&posted=1#post196011' for some background on the reason behind this. commit 9a97fa47643ba1c83bfca21f2f2b6e9ee36e6fc0 Author: Alan Garny '' Date: Sun Jul 3 03:03:53 2011 +0100 Minor editing of a foreach statement in pluginmanager.cpp. commit 051b7b84f857d44ca6efb9fbc56949315635f6b8 Author: Alan Garny '' Date: Sat Jul 2 17:21:27 2011 +0100 Typo in the plugin information function. '(Strange' that it still worked despite the case 'difference!)' commit 4e58a2f8678dfbaec9af667d203eb6a6f282d8bb Author: Alan Garny '' Date: Sat Jul 2 10:18:46 2011 +0100 Minor editing. commit 2cda30bf4013d11f750fcc92b4b29089a1cc84a8 Author: Alan Garny '' Date: Fri Jul 1 20:06:49 2011 +0100 Oops, slight Linux / Mac OS X overlook in the last commit. commit fddca02e39440174c8262fd9fc629e80aa2db7e2 Author: Alan Garny '' Date: Fri Jul 1 19:59:52 2011 +0100 Now load the plugins in the right order '(i.e.' take into account plugin 'dependencies).' Strangely enough, though, a debug version can load all of the plugins, but the release version cannot load the CellMLModelRepository plugin. 'QFileInfo::exists()' reports that the file exists, but then QLibrary::load cannot load it '(?!).' Something to investigate... commit 6f3ed28202172aed2f228b1741f114b71615277e Author: Alan Garny '' Date: Fri Jul 1 11:48:52 2011 +0100 Minor refactoring. commit 8b5f1cbc61a8fc2f9b528d9b486fa3ae03b7e536 Author: Alan Garny '' Date: Fri Jul 1 11:30:39 2011 +0100 Made the plugin manager console/GUI specific. commit 3c8c491b8a7f3e2caee105517e6dc7ecfe9e304d Author: Alan Garny '' Date: Thu Jun 30 18:27:35 2011 +0100 Some refactoring of plugin-related code. Some more work towards the loading of plugins. commit 3fe5f1016a310c86ad9f71fa94f69a416d2e2cbf Author: Alan Garny '' Date: Wed Jun 29 20:41:53 2011 +0100 Fixed a small issue with loading plugins on Linux and Mac OS X. commit e5d96dfd4c5a6295ab0565a696f0240f5ab21462 Author: Alan Garny '' Date: Wed Jun 29 20:31:59 2011 +0100 Cleaned up and fixed the developer documentation, as well as updated our plugins page. commit 849f1c20c7a6506453ec83446bbd2b5b9877d0fd Author: Alan Garny '' Date: Wed Jun 29 20:12:38 2011 +0100 Aesthetic changes... commit 91dc69711c781c1f856dc605fcacf2b5f6e409d0 Author: Alan Garny '' Date: Wed Jun 29 20:04:57 2011 +0100 Can now extract the plugin information about its dependencies, if any, and its type '(console,' GUI or 'both).' commit 48ac28d3bb06825ddce73577ac1f489520b87ece Author: Alan Garny '' Date: Wed Jun 29 16:44:26 2011 +0100 Slight refactoring for the QtMmlWidget plugin. commit 59fc6cc36ab5042b914a8b27302cfa7ae4b26ddf Author: Alan Garny '' Date: Wed Jun 29 16:07:07 2011 +0100 Minor update to the developer documentation. commit 0e8586c6ea97da37418166576470f50ac8874d6d Author: Alan Garny '' Date: Wed Jun 29 16:02:35 2011 +0100 Resuming work on the loading of plugins. commit f966bf8c8d984e76eecbcb51f6f0d3a08a6a074f Author: Alan Garny '' Date: Wed Jun 29 15:47:59 2011 +0100 Aesthetic update. commit 8025797859fecdea98986740a97133c93554f5ee Author: Alan Garny '' Date: Wed Jun 29 15:36:15 2011 +0100 Updated the Oxygen icons to version 4.6.90 from version 4.6.2. commit 5b444f6364664df8b3d8bf4eb5e5257745842ba5 Author: Alan Garny '' Date: Wed Jun 29 15:13:42 2011 +0100 Minor documentation update. commit 46e7aa8621c5b03a5c07a04a837eb8d6d9e7b677 Author: Alan Garny '' Date: Wed Jun 29 15:03:20 2011 +0100 Oops, forgot to remove an obsolete link. commit 21ab2b7869b6ceca18f0d1c1d8cb7447398cfabe Author: Alan Garny '' Date: Wed Jun 29 15:00:33 2011 +0100 Some more update to the developer documentation. commit d9275423f294c1776cacc09b7f92d4a145918220 Author: Alan Garny '' Date: Wed Jun 29 14:25:59 2011 +0100 Further updates to the developer documentation. commit 3cc0994e35400758272b98286a8843db2b1dc347 Author: Alan Garny '' Date: Wed Jun 29 13:57:40 2011 +0100 Updated the developer documentation. commit 1fccd736036c5a1aefd6ad24a2c6535eace5940c Author: Alan Garny '' Date: Wed Jun 29 12:15:30 2011 +0100 Working towards loading the plugins properly, i.e. respecting their dependencies. commit c81272628f031be370fcc57525b4cb30574138f9 Author: Alan Garny '' Date: Tue Jun 28 00:04:45 2011 +0100 Very minor update to the developer documentation '(plugins).' commit 2670960868780f2d954eb3466d55375ebd010ed3 Author: Alan Garny '' Date: Tue Jun 28 00:02:09 2011 +0100 Updated the developer documentation for plugins. commit 09ba8644deee87c8dc7ddd7787addd08ba3bcbc2 Author: Alan Garny '' Date: Mon Jun 27 23:47:11 2011 +0100 Replaced tabs with spaces in qtdependencies. commit 3445f3c78ce8b51fe821086cf8d89c1a0b6b65af Author: Alan Garny '' Date: Mon Jun 27 23:38:59 2011 +0100 Improved our qtdependencies shell script. commit b63842cfb0df23459d9bf6fc5590d9f68dbd78b6 Author: Alan Garny '' Date: Mon Jun 27 19:46:08 2011 +0100 Changed the right accesses to qtdependencies. commit 36a87fee9cfbbd4d08629c53e7d3e879347ec530 Author: Alan Garny '' Date: Mon Jun 27 19:44:56 2011 +0100 Minor update to the developer documentation. commit f5c34dffb1b1de7b0f26f7b5eac20ea2ea72052d Author: Alan Garny '' Date: Mon Jun 27 17:30:33 2011 +0100 Fixed an issue that prevented a release version of OpenCOR from loading the plugins on Windows. '(CMAKE_BUILD_TYPE' needed to be set in the case of the release version and finding the Qt4 package needed to be done after setting 'CMAKE_BUILD_TYPE.)' commit c32530f8655645203dc839341ce22b76748a5c01 Author: Alan Garny '' Date: Mon Jun 27 16:35:29 2011 +0100 Oops... commit bd735071553a1c976fbf0480bf8c25c11f629d76 Author: Alan Garny '' Date: Mon Jun 27 16:34:34 2011 +0100 Cleaned up the INITIALISE_PROJECT CMake macro. commit 350fe234ce03a97053af0a3b2e0d94d7ae3b0410 Author: Alan Garny '' Date: Mon Jun 27 15:50:26 2011 +0100 Some cleaning up of our CMake code. commit 5c0acd004da8d460969e1ecb2ad6b89acc4e0211 Author: Alan Garny '' Date: Mon Jun 27 15:00:46 2011 +0100 Revised the deployment of plugins on Windows and Linux. Fixed some minor mistakes. Slight revision to pluginmanager.cpp. commit 6accd1a3d0e20b58f14024afb31883c8aa102d65 Author: Alan Garny '' Date: Mon Jun 27 12:13:18 2011 +0100 Reorganised and cleaned up our help. commit 76fdba0287e5c4a23bc01ad4a6354243a2cd23c4 Author: Alan Garny '' Date: Mon Jun 27 11:38:20 2011 +0100 Updated the developer documentation to account for our work on plugins. commit ab6c1f4c9de9b5760859df1cf7a4b2985288b6e3 Author: Alan Garny '' Date: Sun Jun 26 18:42:15 2011 +0100 Minor improvements to the Windows and Linux packagings. commit 3de0a912ed777a5fb3dab9da927decebaf63706e Author: Alan Garny '' Date: Sun Jun 26 11:00:28 2011 +0100 I think I now know why QtHelp and QtWebKit were not being deployed by macdeployqt '(and' therefore prevented OpenCOR from working 'properly).' So, updated a comment to reflect this. commit 3a14bccc059e088a2407289f2e046f766a891822 Author: Alan Garny '' Date: Sun Jun 26 02:53:14 2011 +0100 Minor editing. commit b4db4c7bdc360d54922d9e320e783be3768df10f Author: Alan Garny '' Date: Sun Jun 26 02:44:14 2011 +0100 Finally got 'it!' Now, we also deploy QtHelp and QtWebKit, meaning that OpenCOR works fine and 'doesn'\''t' have any problem of Qt dependencies. Wow, very long, but very good day at ''\''the' 'office'\''!' commit cd9059cd8a1ec281b52644e8ed526e6fb0266910 Author: Alan Garny '' Date: Sun Jun 26 00:10:12 2011 +0100 Fixed a couple of things in the OpenCOR dependencies of plugins '(on' Mac OS 'X).' Our current use of install_name_tool seems reasonable to me now. Yet, though one can launch OpenCOR on Mac OS X '(and' the plugins load fine or so it 'seems),' it nonetheless remains that the application 'doesn'\''t' respond and all that one can do is to ''\''manually'\''' close it '(by' clicking on the top left red 'button).' Apparently, we are still using two different versions of QtGui: our own and the one on my development system '(/Users/Alan/OpenCOR/build/OpenCOR.app/Contents/MacOS/../Frameworks/QtGui.framework/Versions/4/QtGui' and '/Library/Frameworks/QtGui.framework/Versions/4/QtGui)...' commit 6958d1c642e5eedd8098e4818a99d83cb549cfde Author: Alan Garny '' Date: Sat Jun 25 19:32:47 2011 +0100 Aesthetic update. commit 8b785a8d98640c56ac150ead318aa6397040601c Author: Alan Garny '' Date: Sat Jun 25 16:40:16 2011 +0100 Following the refactoring in the previous commit, refined the macro and applied it to the other plugins. commit ef831fc195bbfef2b80d0d4a877ef4a7014751cd Author: Alan Garny '' Date: Sat Jun 25 16:10:10 2011 +0100 Combining all the CMake code for a plugin into one big nice macro, and tested it with the QtMmlWidget plugin. commit 835f78e3ee3a82b52d44193a2587c0cbe255ce7c Author: Alan Garny '' Date: Sat Jun 25 13:10:18 2011 +0100 Working towards making sure that our plugins refer to our embedded version of our plugins and Qt libraries. Still not quite there though, despite things looking right, e.g. 'Alan@Venus:~/OpenCOR/build/OpenCOR.app/Contents/PlugIns/OpenCOR$' otool -L libCore.dylib libCore.dylib: @executable_path/../PlugIns/OpenCOR/libCore.dylib '(compatibility' version 0.0.0, current version '0.0.0)' @executable_path/../Frameworks/QtCore.framework/Versions/4/QtCore '(compatibility' version 4.7.0, current version '4.7.3)' @executable_path/../Frameworks/QtGui.framework/Versions/4/QtGui '(compatibility' version 4.7.0, current version '4.7.3)' /usr/lib/libstdc++.6.dylib '(compatibility' version 7.0.0, current version '7.9.0)' /usr/lib/libSystem.B.dylib '(compatibility' version 1.0.0, current version '125.2.11)' 'Alan@Venus:~/OpenCOR/build/OpenCOR.app/Contents/PlugIns/OpenCOR$' commit f1d13b0c6db4712f2cea94bd2616e0973d97a98e Author: Alan Garny '' Date: Sat Jun 25 10:06:03 2011 +0100 Make sure that the CellML, Core, QScintilla, QtMMlWidget, VersionManager and Viewer plugins use the right Qt libraries. '(Note:' yes, we have yet to do the same for the CellMLModelRepository, FileBrowser, FileOrganiser and Help 'plugins.)' For the record, to find out which Qt libraries a plugin '(or' any other shared library for that 'matter)' uses, one should use: otool -L '.' commit bdac3b7426046ded2a36e43d19a36cd6f5598512 Author: Alan Garny '' Date: Sat Jun 25 09:41:18 2011 +0100 Minor cleaning up. commit d902732de641fe21e034f4d92fb12c52877a4734 Author: Alan Garny '' Date: Fri Jun 24 20:42:58 2011 +0100 Ok, to remove the whole contents of the PlugIns directory was a bad 'move!' Instead, we should only remove things that gets created by macdeployqt. Otherwise, this means that we can re-add the checking of the sqldrivers and OpenCOR folders under the PlugIns directory... commit 20926754f2c24b966bc8e5e86885c9e566422bd3 Author: Alan Garny '' Date: Fri Jun 24 20:26:34 2011 +0100 Slight improvements to our CMake code for Mac OS X. Basically, we delete the whole contents of PlugIns before building things '(after' having built the project 'before).' If we 'don'\''t' do that, then we will get various errors about not being able to copy the Qt libraries. As part of that process, we 'don'\''t' check whether the sqldrivers folder exists under the PlugIns folder. Indeed, if we were to keep checking, then the SQL drivers 'wouldn'\''t' get copied properly '(?!).' For consistency, we 'don'\''t' check for the OpenCOR folder under the PlugIns folder either. commit cd5d8e6a24322a508acd73221493d27512ffab26 Author: Alan Garny '' Date: Fri Jun 24 19:54:25 2011 +0100 Make sure that the Viewer plugin uses our version of the Qt libraries. commit 62eb35a7e59dbe0178ae58b7e473201d9bce3433 Author: Alan Garny '' Date: Fri Jun 24 19:05:47 2011 +0100 Made the FileOrganiser plugin a ''\''proper'\''' plugin. commit bfa71f0c2771879234fdcc42f8e11fe85e333cc6 Author: Alan Garny '' Date: Fri Jun 24 19:00:10 2011 +0100 Made the FileBrowser plugin a ''\''proper'\''' plugin. commit 4ec45460f03f5e1c3e9df6cef3a4f57f678de518 Author: Alan Garny '' Date: Fri Jun 24 18:55:39 2011 +0100 Made the CellMLModelRepository plugin a ''\''proper'\''' plugin. commit 42a73e1f7c0f63819c13b2456e1c8b482098342f Author: Alan Garny '' Date: Fri Jun 24 18:49:52 2011 +0100 Made the Help plugin a ''\''proper'\''' plugin. commit 5cfcd472ccecfe497015b893e7e967605736d4de Author: Alan Garny '' Date: Fri Jun 24 18:22:22 2011 +0100 Minor update to the loading of plugins. commit 095e490fec04557382472131d33c2ea7782c889c Author: Alan Garny '' Date: Fri Jun 24 18:14:49 2011 +0100 Made the Core plugin usable by other plugins. This means that now, the Viewer plugin '(which' needs the Core and QtMmlWidget 'plugins)' builds fine and can be loaded as a ''\''proper'\''' plugin. 'Yeah!' commit 4b824df80d339ee4ccf4885a9095e070a4d9d904 Author: Alan Garny '' Date: Fri Jun 24 18:02:55 2011 +0100 Some cleaning up, as well as made the QtMmlWidget plugin usable by other plugins '(or,' rather, it seems like it should 'work!).' commit bdcc2ddd182801da80b5b8dac7fd8f12e9ac455a Author: Alan Garny '' Date: Thu Jun 23 17:15:32 2011 +0100 Minor update to the main CMakeLists.txt file. commit 637f825ea3c6f1bdbcb5e76d2022acec2759c452 Author: Alan Garny '' Date: Wed Jun 22 19:56:20 2011 +0100 Added a new plugin-specific CMake macro to make sure that a given plugin refers to our embedded version of the Qt libraries which it needs. Without that, OpenCOR would sitll work, but we '1)' would get loads of warning messages on the console and '2)' Cmd+Q 'wouldn'\''t' work close OpenCOR anymore. There might also be other side effects, but those are the two obvious ones I observed. Anyway, now 'it'\''s' all 'fine!' commit dcbb50c6a75e2c3f1f6a1beb1e0d9090bfcf15a5 Author: Alan Garny '' Date: Wed Jun 22 18:12:08 2011 +0100 Minor refactoring. commit 8b017660a71599d8d65649d4715caccaf7af739f Author: Alan Garny '' Date: Wed Jun 22 17:32:56 2011 +0100 Made the VersionManager plugin a proper plugin. commit a9d2c9cb6223f3ee8e78d1c1efe5bbbde26d76b5 Author: Alan Garny '' Date: Wed Jun 22 16:53:24 2011 +0100 Made the CellML, QScintilla and QtMmlWidget plugins proper plugins. commit c7787bc4e1cc8c43215a913f3ad45e9c14801ff0 Author: Alan Garny '' Date: Wed Jun 22 16:30:15 2011 +0100 Made the Core plugin a proper plugin, i.e. it can now be loaded. Disabled the other plugins for the time being. commit 3488110fda47a2f29a17fa99f148a7b02378a3ba Author: Alan Garny '' Date: Wed Jun 22 13:37:08 2011 +0100 Addendum to the previous commit. commit 51c3e7399d39398f7e43e0296056f5520a2843ac Author: Alan Garny '' Date: Wed Jun 22 13:31:09 2011 +0100 Working on loading the plugins which currently fails since our ''\''plugins'\''' are only shared libraries at this stage. commit 3ee5b55c167879005f5a9f70fabaa54823563f23 Author: Alan Garny '' Date: Tue Jun 21 15:11:40 2011 +0100 Minor typo. commit 980a8e14dc878d4c6246ba6bc4126f4aecd8a17d Author: Alan Garny '' Date: Tue Jun 21 09:14:39 2011 +0100 Minor update to the developer documentation following the release of Qt Creator 2.2.1. commit 66c5b5b9d5e64134c988f0797ea9bc99eed0a7bf Author: Alan Garny '' Date: Mon Jun 20 19:44:57 2011 +0100 Moved the plugins to PlugIns/OpenCOR on Mac OS X, thus ensuring that there is no risk of plugins being mixed up '(since' a Mac OS X bundle includes everything that is required by a Mac OS X application and in our case, there are definitely other plugins, 'so...).' commit ab2c7a1107d44c38b4be835201d0735d6bd3411f Author: Alan Garny '' Date: Mon Jun 20 19:16:34 2011 +0100 Minor fix to PluginManager for Mac OS X. commit 4870a26489640adcccbc56700beb2add8919fee7 Author: Alan Garny '' Date: Mon Jun 20 17:59:20 2011 +0100 'Can'\''t' just move the plugins, since on Linux '(and' I imagine Mac OS 'X),' the .so file contains import information and may therefore '(e.g.' in the case of the Core 'plugin)' be required to build a plugin '(e.g.' the Viewer 'plugin),' so... commit ff730d52124991cf9f487e0ed8925915b7cc16af Author: Alan Garny '' Date: Mon Jun 20 17:53:26 2011 +0100 Working on the loading of plugins. commit 70f4e921b392813fb45ecf7af47266b2020c403d Author: Alan Garny '' Date: Mon Jun 20 17:36:19 2011 +0100 Straightforward refactorisation. commit 299c108b9eb19958f4fc7d2ba36a0989f5dd9f0c Author: Alan Garny '' Date: Mon Jun 20 17:04:19 2011 +0100 Started work on automatically loading the plugins. commit d903a435fdf0ba3302d7382efe6f506cd849ff41 Author: Alan Garny '' Date: Mon Jun 20 16:36:52 2011 +0100 Some more cleaning up, including moving '(rather' than 'copying)' a plugin from the build folder to the plugins folder. commit a3fe1878b506f3d569048939d0cdd21001fba10f Author: Alan Garny '' Date: Mon Jun 20 16:32:28 2011 +0100 Made VersionManager a plugin. Some simple cleaning up. commit 3136d0eca1ed5341793941e9ee53fd68b11bba61 Author: Alan Garny '' Date: Mon Jun 20 16:13:58 2011 +0100 Minor cleaning up. commit 7be598740137694fdb2bfee2024692ec99cd3498 Author: Alan Garny '' Date: Mon Jun 20 15:59:27 2011 +0100 Minor update to the developer documentation. commit 6fa895eb62ce8fd3f5ae5be6179d518ca147f385 Author: Alan Garny '' Date: Mon Jun 20 15:42:49 2011 +0100 Moved Info.plist.in from the res folder to the distrib folder since this is where it ought to be. commit 407d6355ffbfbb5466d53619c1c50cce1b69ba2a Author: Alan Garny '' Date: Mon Jun 20 15:39:25 2011 +0100 Moved the CellML plugin to the misc folder from the 3rdparty folder. Moved a few resources to plugins. commit b95995759a3dcf4580f5712335dc6bcd18f727c4 Author: Alan Garny '' Date: Mon Jun 20 15:28:13 2011 +0100 Created a CellML plugin. Need to move it to the misc folder '(from' the 3rdparty 'folder)' though... commit ae19e057a6f6f3258f2c4a7490474877e78d5a68 Author: Alan Garny '' Date: Mon Jun 20 15:01:23 2011 +0100 Big commit '(argh,' not good 'practice!).' Moved everything away from the ''\''bare'\''' OpenCOR itself and '(termporarily)' deleted things or moved them to a plugin. Some cleaning up is to follow though... commit 3aa35cd1e1a385e99b083f92d622455e12820b75 Author: Alan Garny '' Date: Mon Jun 20 13:16:21 2011 +0100 Had forgotten to update some UI files following the renaming of the CoreUI plugin to Core. commit 971dcd74399494ced64d30dbcd1256d11e5b3646 Author: Alan Garny '' Date: Mon Jun 20 12:58:23 2011 +0100 Moved CentralWidget to the Core plugin. commit 70461613bc97a9e7737c0c8dc7f0d7c3ad06288c Author: Alan Garny '' Date: Mon Jun 20 12:44:53 2011 +0100 Moved PluginsWindow to the Core plugin. commit 1f3c6ad4819289162fd7936afa1ce98efdb03371 Author: Alan Garny '' Date: Mon Jun 20 12:34:18 2011 +0100 Added CheckForUpdatesWindow and PreferencesWindow to the Core plugin. commit 3b9c8d9d88b38f00d9aa238b53c0d50b95a7ead2 Author: Alan Garny '' Date: Mon Jun 20 12:21:51 2011 +0100 Moved the TabWidget component to the Core plugin. commit 6e230f4081b96822105843ca9952c5135fa2ae1b Author: Alan Garny '' Date: Mon Jun 20 11:48:51 2011 +0100 Minor cleaning up to the main CMakeLists.txt file. commit d237714bdd5ff22992f2c33b58801f0a8e0d978f Author: Alan Garny '' Date: Sun Jun 19 18:30:21 2011 +0100 A few more minor updates to the developer documentation. commit 3a7c46b7fd2f517c3c5ea5f0f9362abb6d84edfc Author: Alan Garny '' Date: Sun Jun 19 18:24:51 2011 +0100 A few minor updates to the documentation. commit 1e414e58ad230105ad07fd4d9c02be2787bf82d9 Author: Alan Garny '' Date: Sun Jun 19 14:10:26 2011 +0100 Forgot a few things following the renaming of the CoreUI plugin to Core. commit a04bdc8731591096d7a87dd4c3a34ac0d93e09be Author: Alan Garny '' Date: Sun Jun 19 14:04:35 2011 +0100 Finish renaming the CoreUI plugin to Core. commit 16b738476309724f0871d999cfae243f71c6cf3f Author: Alan Garny '' Date: Sun Jun 19 14:03:44 2011 +0100 Reverted a previous decision to have both a Core and a CoreUI plugin. The original idea was to have the Core plugin used by both the GUI and console '(on' 'Windows)' versions of OpenCOR, and the CoreUI plugin only used by the GUI version of OpenCOR. In the end, even if the ''\''new'\''' Core plugin contains GUI-related stuff, it can still be used by the '(Windows)' console version of OpenCOR, so... commit c8d9f736ab3d3c57401f1fb650f578f5de218e2b Author: Alan Garny '' Date: Sun Jun 19 12:27:01 2011 +0100 Very minor update to the developer documentation. commit 2cd024fa9272d9187f1c35cb08c6df404b863229 Author: Alan Garny '' Date: Sun Jun 19 12:18:12 2011 +0100 Cleaned up some of our CMake code. commit 96e35991b698ba194b2747910c09df02c653a506 Author: Alan Garny '' Date: Sun Jun 19 11:56:31 2011 +0100 Include the third-party libraries AFTER having updated the language files. Indeed, if we do that before, then some third-party libraries '(e.g.' 'LibQxt)' will require translations which is not something we should be worried about. commit 03e16e957722d7829d9395c1294ab0ed4b057ee6 Author: Alan Garny '' Date: Sun Jun 19 11:50:58 2011 +0100 Updated the developer documentation. commit fd558652b4baa2f8e8cb6fa29e3b540a8e0750b3 Author: Alan Garny '' Date: Sun Jun 19 11:39:27 2011 +0100 Removed the QxtTemporaryDir dependency from the Help plugin '(no' need for it in the end, 'so...).' This means that some LibQxt files were also removed. Moved the CMake-related stuff for LibQxt and QtSingleApplication to their respective directories and INCLUDE them in the 'project'\''s' CMakeLists.txt file instead '(i.e.' cleaner that 'way).' commit 851375b14b023122021e315613c83a40bf8f075d Author: Alan Garny '' Date: Sun Jun 19 10:33:03 2011 +0100 Removed the CMakeLists.txt file for QtSingleApplication which is not required anymore '(but' 'couldn'\''t' be directly removed as part of the previous 'commit).' commit 4da03e84f87b4b146e2dd926e8ceb624c454eec9 Author: Alan Garny '' Date: Sun Jun 19 10:32:11 2011 +0100 Embedding QtSingleApplication to OpenCOR, i.e. we are not making it a plugin anymore or even a shared library. Indeed, the idea is really to embed in OpenCOR everything that is critical to its functioning, as opposed to making those things a plugin. This means that part '(all?)' of LibQxt will also have to be embedded. commit 58fb54d0174ebddd726b5da070824c92fc2564e7 Author: Alan Garny '' Date: Thu Jun 16 18:35:55 2011 +0100 Cosmetic update to plugin.cmake. commit 4d1fe3b8dd5098896e2945193a591540cffca699 Author: Alan Garny '' Date: Thu Jun 16 17:36:03 2011 +0100 Minor update to the View menu which gets its Organise and Edit items enabled/disabled depending on whether they contain any items. commit cef17f73df521c932c457317bc032ee08ea977df Author: Alan Garny '' Date: Thu Jun 16 14:58:37 2011 +0100 Further cleaning up of CMake files. commit 20f5b6a825fa586ae49189b048c0836e98a953b7 Author: Alan Garny '' Date: Thu Jun 16 14:01:53 2011 +0100 Some cleaning up in the CMake files. Now copy the OpenCOR-specific plugins in the right folder on Mac OS X. commit b2d1bdfe7601fc4c0cb641482bd682b62ebf944f Author: Alan Garny '' Date: Thu Jun 16 12:46:04 2011 +0100 Added QShortcut to the include list of src/ui/mainwindow.cpp. I had removed it not realising that 'it'\''s' needed on Mac OS 'X!' commit 22f3c966e35ac09077f2894a8fa2f080f2e5460d Author: Alan Garny '' Date: Thu Jun 16 12:44:31 2011 +0100 Minor adjustment for Windows after making use of CMAKE_SHARED_LIBRARY_PREFIX in plugin.cmake. commit 3e4e65c64e03a1f4d79662a44796b54616853f35 Author: Alan Garny '' Date: Thu Jun 16 12:38:48 2011 +0100 Slight modification to plugin.cmake so that OpenCOR can build on Linux. commit 7538ca7fbaae30abd0d255b40dce6375c7a879b4 Author: Alan Garny '' Date: Wed Jun 15 18:03:56 2011 +0100 Working towards having the plugins in their proper directory, both after building OpenCOR and when packaged. commit d6c33b54b22a622673374246c004f1b8b5dc9d2c Author: Alan Garny '' Date: Wed Jun 15 16:53:04 2011 +0100 Cleaned up our CMake files. commit cbcaf5cb87d929d40ce339f77a26de0d7811037f Author: Alan Garny '' Date: Wed Jun 15 16:14:22 2011 +0100 Removed 'OpenCOR'\''s' direct dependency on the Help plugin. commit ddcaa1fe9fbd8cf87c73a35d1f478afccd0fbca5 Author: Alan Garny '' Date: Wed Jun 15 16:03:08 2011 +0100 Working towards removing 'OpenCOR'\''s' direct dependency on the Help plugin. commit a167cd119512f04815535e6844a5fe4610d1d7c2 Author: Alan Garny '' Date: Wed Jun 15 14:57:31 2011 +0100 Removed 'OpenCOR'\''s' direct dependency on the QScintilla and QtMmlWidget plugins. commit 166e17b2ae507a42ea6736dedfb988f987eff216 Author: Alan Garny '' Date: Wed Jun 15 14:15:06 2011 +0100 Removed 'OpenCOR'\''s' direct dependency on the CellMLModelRepository, FileBrowser and FileOrganiser plugins. commit 6ef40be0c230dfbd510ae705a3fbada8df231181 Author: Alan Garny '' Date: Wed Jun 15 13:58:03 2011 +0100 Removed 'OpenCOR'\''s' direct dependency on the Viewer plugin. commit 5ba22a1173c81dc662de472de7f54725d0c17367 Author: Alan Garny '' Date: Wed Jun 15 13:31:18 2011 +0100 Updated some UI files following our renaming and moving of plugins '(Core' to 'CoreUI).' commit ebfd54b0d08012832851c9afd8104e4cf6a9b0ed Author: Alan Garny '' Date: Wed Jun 15 13:02:13 2011 +0100 Updated the .ts files so that they use a UNIX type of convention for end of lines '(as' opposed to a Windows convention which caused the file to be ''\''modified'\''' every time one would build OpenCOR on 'Windows).' commit 076e67a98641d6407913931729ff049916a2a366 Author: Alan Garny '' Date: Wed Jun 15 12:07:42 2011 +0100 Renamed the Core plugin to CoreUI, since its contents is really about UI. commit 5ba5056404b1d5eeb8e89da00aff5a4699497476 Author: Alan Garny '' Date: Wed Jun 15 11:35:55 2011 +0100 Moved the Core and Help plugins to the misc folder. commit fa360381be0800247165ef745cbbf9a06d3fba36 Author: Alan Garny '' Date: Sat Jun 11 02:31:54 2011 +0100 Minor updates to the developer documentation. commit f0f677c54824c0297b122e91fc7280a3385a58a1 Author: Alan Garny '' Date: Sat Jun 11 01:58:51 2011 +0100 Moved the various resources where they should be '(following' our creation of 'plugins).' commit fe64b0d15222e3f4362e840548d032c4f6029a96 Author: Alan Garny '' Date: Fri Jun 10 21:42:30 2011 +0100 Forgot to update 'packageproj[.bat].' commit 14b87f11d5380dd9931da6cc6ec02aff3c378902 Author: Alan Garny '' Date: Fri Jun 10 21:37:37 2011 +0100 Fixed the issue of the two '"Help"' targets generated by CMake '('\''just'\''' renamed the name of the CMake project for the plugins while ensuring that the generated library has the right name using the OUTPUT_NAME property in 'SET_TARGET_PROPERTIES).' Some minor cleaning up too. commit e63161acad6f39bd6a0ca27766387c024d94c999 Author: Alan Garny '' Date: Fri Jun 10 21:29:32 2011 +0100 Removed 'cleanprojall[.bat]' since we 'don'\''t' really need them now that the third-party libraries are plugins, and anyway it 'doesn'\''t' that long to compile everything. commit 73bcd96adb8a8753bf69734c4a03ea4f0907d558 Author: Alan Garny '' Date: Fri Jun 10 20:44:53 2011 +0100 Slight update to the 'developer'\''s' documentation following the conversion of the 3rd party libraries into plugins. commit 600e032fb885e3fda1844cef4835009c9d58a067 Author: Alan Garny '' Date: Fri Jun 10 20:13:33 2011 +0100 Converted the third-party libraries to plugins. This does indeed not only make sense, but also simplifies our CMake files. commit e872c6dd930b6eaddc24436eebe922ede886c224 Author: Alan Garny '' Date: Fri Jun 10 19:43:43 2011 +0100 Minor update to the 'developer'\''s' documentation. commit 95d58d1a3e7411876e7fe73817f55d10796069c3 Author: Alan Garny '' Date: Fri Jun 10 19:35:26 2011 +0100 Minor renaming of the 'plugins'\''' folder commit dba37c928cadeac7e5cd97c9137b9bbf4b77732d Author: Alan Garny '' Date: Fri Jun 10 19:22:15 2011 +0100 Minor improvements to the CMakeLists.txt files. commit 3c4703414b5018746d7020a4e266992d9f888c19 Author: Alan Garny '' Date: Fri Jun 10 17:02:23 2011 +0100 Converted the organiser widgets/windows to plugins. commit efc5d8c0b4262f6298f384606279fb8316fec0e5 Author: Alan Garny '' Date: Fri Jun 10 15:12:46 2011 +0100 Made the help window and widget into a plugin. Note that it currently results in the following message when building OpenCOR: makefile:1227: warning: overriding commands for target '`Help'\''' makefile:257: warning: ignoring old commands for target '`Help'\''' This is because the Help plugin is called... well, '"Help"' and that CMake generates a '"help"' target, hence conflict... So, this will have to be sorted out somehow. commit db2ad0ff4e452fc82358df82ef0172e435721c7e Author: Alan Garny '' Date: Fri Jun 10 11:25:51 2011 +0100 Added the skeleton of a plugin class. commit d31fd47321843249856dd2f6a9b673b2466516dd Author: Alan Garny '' Date: Thu Jun 9 22:07:37 2011 +0100 Argh, the double quotes are apparently important to refer to '${LINK_FLAGS_PROPERTIES}' on Mac OS X within common.cmake. '(For' consistency, we also put them in case of 'WIN32.)' commit 73f656250e3aa888697935f10e96724a511eacae Author: Alan Garny '' Date: Thu Jun 9 21:59:13 2011 +0100 Another minor update to the filename format of shared libraries / plugins. Indeed, if something like libViewer.XX is not common on Windows, it happens that it is on Linux and Mac OS X, so... commit 7c9d547a0835c43de19297e28b84953f82daea87 Author: Alan Garny '' Date: Thu Jun 9 14:52:25 2011 +0100 Minor update to the filename format of shared libraries / plugins. It used to be something like libViewer.XX while now 'it'\''s' Viewer.XX '(for' the Viewer 'plugin).' commit 860c84decb6796a9db8c2a9bfc7d24b202ce9d0c Author: Alan Garny '' Date: Thu Jun 9 13:54:46 2011 +0100 Fixed a small '(but' 'vicious!)' issue on Ubuntu which prevented the language file for the Viewer plugin from working. Interestingly enough, everything was fine on Windows and Mac OS X. In the end, and thanks to a Qt developer '(http://lists.qt.nokia.com/pipermail/qt-interest/2010-December/029558.html),' it was just an issue with the .qrc filename being the same for OpenCOR itself and the Viewer plugin '(i.e.' 'ui.qrc).' To rename one of the two '(that' of the Viewer plugin in our 'case)' fixed the problem on Ubuntu. Crazy, but well... it now 'works!' commit 6b10311c6bddc6d989b4b5c53f68420b5bb907f1 Merge: a7161f4aa a234a0c9a Author: Alan Garny '' Date: Wed Jun 8 18:06:37 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit a7161f4aa5a9f6fca3fb24b818e7a4bfa30b7089 Author: Alan Garny '' Date: Wed Jun 8 17:55:30 2011 +0100 Minor editing of comments. commit a234a0c9ae69b74b59733fb0cddd1337027c4a78 Author: Alan Garny '' Date: Wed Jun 8 17:55:30 2011 +0100 Minor editing of comments. commit e4ad0a9a6aa4d07dc54d9a37b10bcda41efd54fb Author: Alan Garny '' Date: Wed Jun 8 17:52:13 2011 +0100 Some minor cleaning up. commit c76850e136bee64351c39b048f37dc8dbc5e3f45 Author: Alan Garny '' Date: Wed Jun 8 17:34:14 2011 +0100 Oops, when the language files are updated for OpenCOR itself is important. Indeed, we need an icon for OpenCOR which means that we eventually update SOURCES which causes problem with lupdate. commit 9982083081b975e559c6b52ae9c2402412611965 Author: Alan Garny '' Date: Wed Jun 8 17:23:08 2011 +0100 Some cleaning up in the CMake code for plugins. Also improved the CMake code for third-party libraries. commit bf0409d48b1045f94fb6d34f341c4d9de02ffd4f Author: Alan Garny '' Date: Wed Jun 8 16:47:04 2011 +0100 Minor cleaning up while trying to understand why the internationalisation of the Viewer plugin 'doesn'\''t' work on Linux '(while' it works perfectly fine on 'Windows).' commit 7cbb374e110df50123dad7aaa1267e20266a6688 Author: Alan Garny '' Date: Wed Jun 8 16:20:51 2011 +0100 Forogot to finish the documentation on internationalisation in the context of a plugin. commit 4e0524dd3ca0d3d3b643eb7bbf6e63a9aadec306 Author: Alan Garny '' Date: Wed Jun 8 16:10:13 2011 +0100 Added support for internationalisation in the plugins and improved our CMake code in the process. commit e49cc002c49a865be3b07530d4b8f6fa3ecaef73 Author: Alan Garny '' Date: Wed Jun 8 10:28:29 2011 +0100 Slight update to the developer documentation. Also, slight update to our common.cmake file. commit 15038f40df7ca1c400da1a2be9914ddbae1acb3a Author: Alan Garny '' Date: Tue Jun 7 17:52:23 2011 +0100 Started work on issue '#11' '(support' for 'plugins)' by moving some code to a ''\''pure'\''' shared library which will eventually become a ''\''proper'\''' plugin. commit a1dece4f4d6e6974ed66ee137a0c64c2c64e6e8b Author: Alan Garny '' Date: Tue Jun 7 15:46:38 2011 +0100 Added a menu item and window for plugins management. commit 19e3a199b4bbe2588aaa6948df20a76ce161ec28 Author: Alan Garny '' Date: Tue Jun 7 14:38:01 2011 +0100 Created a new macro for packaging third-party libraries. commit 73689d592106d8593ce10b075721b2a08eb3545b Author: Alan Garny '' Date: Tue Jun 7 14:33:20 2011 +0100 Very minor cleaning up. commit e8cb94ab94f7f48ff60f89bd8ed3d910715e57fc Author: Alan Garny '' Date: Tue Jun 7 14:32:12 2011 +0100 Some more work on the initialisation macro. commit a24ec1b7580471c0ac9b6b285f5c5bd52afb9c6e Author: Alan Garny '' Date: Tue Jun 7 14:15:28 2011 +0100 Some cleaning up. commit 0baa18d5bebccb0d4ce77a5155d33cb5560100d9 Author: Alan Garny '' Date: Tue Jun 7 14:08:27 2011 +0100 Further work on the initialisation macro. commit e49e24c214e4fb0186729b3e44d3cfd16a37618d Author: Alan Garny '' Date: Tue Jun 7 13:29:51 2011 +0100 Created an initialisation macro for our two main CMakeLists.txt files. This allows to set up things that are common to our various CMakeLists.txt files. commit 94096ab249af17de3cc3c9f1f38fd1ce247560cf Author: Alan Garny '' Date: Mon Jun 6 17:32:25 2011 +0100 Updated the internationalisation documentation. commit 4cd4ca38eae2d508e991528782762e3d2d8a4132 Author: Alan Garny '' Date: Mon Jun 6 16:25:31 2011 +0100 Renamed gui.qrc to ui.qrc '(more' consistent with the 'rest)' and updated our .ui files to point to ui.qrc '(rather' than the ''\''old'\''' 'OpenCOR.qrc).' Added some initial documentation about internationalisation in OpenCOR. commit 2830ed0dccff89490f30ababcf88caf782982dc1 Author: Alan Garny '' Date: Mon Jun 6 15:40:33 2011 +0100 Oops, forgot to add a couple of 'files!' commit f14345a7c96595d1f30649069497e225daade631 Merge: 40b12a276 d6c458f54 Author: Alan Garny '' Date: Mon Jun 6 15:38:53 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 40b12a276422bbacea40bcf1bec7f929c4dedb34 Author: Alan Garny '' Date: Mon Jun 6 14:57:07 2011 +0100 Improved the sharing of code between the Windows console version and the main version. commit 63af6c8e340c3f37e6fb07f70d786567f3e28fa7 Author: Alan Garny '' Date: Mon Jun 6 14:52:23 2011 +0100 Updated the version of qt_fr.qm to that of the latest Qt version '(i.e.' '4.7.3).' commit d6c458f54e99d8e850c7b3fc6fd576e0ce1da3b8 Author: Alan Garny '' Date: Sat Jun 4 18:12:08 2011 +0100 Aesthetic changes. commit 49d94dfbccd07ae5cde1a11cf93b96d8c58ffe87 Author: Alan Garny '' Date: Sat Jun 4 01:56:52 2011 +0100 Cleaned up some more code and made some code common to the command line and GUI versions of OpenCOR. commit eb46c3749f69c58273f78efc1cc912b8fb8ae8f7 Author: Alan Garny '' Date: Sat Jun 4 00:49:03 2011 +0100 Some cleaning up in the CMakeLists.txt files. commit 5d5f91e3170ff5df09014ea58e0633686ff11016 Author: Alan Garny '' Date: Fri Jun 3 12:10:51 2011 +0100 Some reorganising of files. commit 4d12668ca17dc61345ea586dfa8074c2953c517a Author: Alan Garny '' Date: Fri Jun 3 12:06:57 2011 +0100 Reorganised the file structure a bit to account for the fact that, as much as possible, 'OpenCOR'\''s' features are available through plugins. commit 5b1fcae0e0fcef4ffc8628c6d3a0995892ac2820 Author: Alan Garny '' Date: Wed May 18 16:09:02 2011 +0100 Some simple cleaning up. commit 4851480377de7cd1f68ad8e268c4007dc76fcbcc Author: Alan Garny '' Date: Wed May 18 15:41:04 2011 +0100 Some simple cleaning up. commit be9690782239f7a7cee8f0077240194d3d5d6db4 Author: Alan Garny '' Date: Wed May 18 14:40:33 2011 +0100 Added the skeleton of a plugin manager. commit a2e90f47abb1347e1926c8cfb78bf3df4277ccfd Author: Alan Garny '' Date: Wed May 18 13:36:02 2011 +0100 Yet another renaming of UpdatesManager to VersionManager, since we 'don'\''t' only want to update, but revert to an older version if necessary '(see' issue '#37).' commit 4ba8d55f9dafc4c912808ac59453f5e98290aa6f Author: Alan Garny '' Date: Tue May 17 13:50:12 2011 +0100 Oops, simple renaming of our updateS manager. commit 10f657f5770f02e303cc7690c2ac25b17c3fbb72 Author: Alan Garny '' Date: Tue May 17 13:46:17 2011 +0100 Added the skeleton of our update manager class. commit 6a9cd27d201509b699e072b0fabb4caab7776176 Author: Alan Garny '' Date: Mon May 16 18:24:50 2011 +0100 Oops, silly 'oversight!' commit 3e3fa01f5c37fb0ebc8baf601b4685f076f7cbe7 Author: Alan Garny '' Date: Mon May 16 14:54:17 2011 +0100 Some cleaning up. commit 99641e71aa5ca6d2b5f56c25847efe94613f94dc Author: Alan Garny '' Date: Mon May 16 13:43:21 2011 +0100 Determine the application bit version '(i.e.' 32-bit or '64-bit).' Also determine the type of OS '(i.e.' Windows, Linux or Mac OS 'X).' Some cleaning up. commit 10fcdc2e55b66c28dc6970bbd94dee2819abbf29 Author: Alan Garny '' Date: Sun May 8 15:05:24 2011 +0100 Renamed the UpdateWindow class to CheckForUpdatesWindow. This means that there would most likely be no need for using a namespace anymore, but still it 'doesn'\''t' harm using one, so... commit f68577ed6263d72b8a4d19885e8a2cd4d252690e Author: Alan Garny '' Date: Sun May 8 14:59:28 2011 +0100 Getting ready '(with' regards to 'translations)' for when PreferencesWindow and UpdateWindow get some contents that needs translating. commit c1b75925b2b98f066c9de5fa76c878b23c8949d9 Author: Alan Garny '' Date: Sun May 8 14:18:34 2011 +0100 Added a '(n' 'empty)' preferences window. commit ac79b9daf24c2eabf2744cf11c3c84eb353ae7f8 Author: Alan Garny '' Date: Sun May 8 12:31:37 2011 +0100 Make use of the OpenCOR namespace throughout the project. commit 1315a8b8a2b698d288b06340bc5471b3ce731a48 Author: Alan Garny '' Date: Sun May 8 11:36:51 2011 +0100 Make a simple call to our '(empty)' update window from the '"Check' for 'Updates"' menu in the main window. Note that this required using a namespace since UpdateWindow is indeed used by at least Windows, so there was a conflict of name. Talking of the namespace, we created one called OpenCOR '(yes,' it 'doesn'\''t' respect our name convention -- it ought to be Opencor, if anything -- but that will have to be our exception that confirms the 'rule).' The use of that namespace now needs to be extended to the rest of the project. This is, actually, something I meant to do for some time, but thought I would delay it until it actually proved useful/necessary. Well, that time has now 'come!' commit 34ac5a82870388f113f69ad3c8451b9c03f2c990 Author: Alan Garny '' Date: Sun May 8 03:06:46 2011 +0100 Aesthetic update to UpdateWindow. commit 6c1d4ebcaf9d8b0ce0580746f81f79314356012e Author: Alan Garny '' Date: Sun May 8 03:06:25 2011 +0100 Moved CommonWidget from src/widget/misc to src/widget. Slight update to the developer documentation as a result of that move. commit a6fe33f49b409de15be5a51c676516fb56a5ffd3 Author: Alan Garny '' Date: Sat May 7 18:21:13 2011 +0100 Renamed an action in the main window. commit f5c02400705c5e3f80d965b46025e0c10b9ef56c Author: Alan Garny '' Date: Sat May 7 18:18:26 2011 +0100 Some minor updates to the main menu. Also added a new '(blank' and unused at this 'stage)' window for the update feature. commit 92c545d165cc169d07ca6d4292fe242d923296bd Author: Alan Garny '' Date: Sat May 7 16:15:37 2011 +0100 Slight improvement to the opening of files from the open dialog box. commit 78d610022c0c5d81f25737c59b10c4d6fc9541e4 Author: Alan Garny '' Date: Sat May 7 10:08:05 2011 +0100 Minor updates to the documentation. commit cf887facbc35a57f56f2337140fda7a114c0e6b3 Author: Alan Garny '' Date: Fri May 6 19:23:33 2011 +0100 Keep track of the last used directory when calling opening files using the file dialog box. It 'doesn'\''t,' however, address the case where the user goes to a particular directory and closes the file dialog box without selecting a file. In fact, I am not sure it can be done. I am waiting to hear from the Qt community on this. commit 67ad9a9b34a5d3dcb9c1c72b994f42cbbe769f23 Author: Alan Garny '' Date: Fri May 6 13:57:56 2011 +0100 Implemented the opening of files from the menu and toolbar. commit 378865304bba2fd4846053f13dabf72482213260 Author: Alan Garny '' Date: Fri May 6 12:16:58 2011 +0100 Slight update to the developer documentation following the release of Qt Creator 2.2.0. commit 987f5f8629817716b201739abc530c017868cc52 Author: Alan Garny '' Date: Thu May 5 17:40:55 2011 +0100 The previous commit was merely to keep track of changes that might become definitive at some point. Indeed, Qt SDK 1.1 is a no-go at this stage, since it contains issues that prevent us from building/packaging OpenCOR on Windows and Mac OS X. So, we are back to installing Qt 4.7.3 and Qt Creator 2.1.0 individually. commit 7d74d1b8eb605f52c5172dc54c6cdc2f7933b684 Author: Alan Garny '' Date: Thu May 5 12:58:59 2011 +0100 Updated the developer documentation following the release of Qt SDK 1.1. Also corrected a few links that were still pointing to SourceForge, despite our move to GitHub. Some minor aesthetic changes. commit 39fde29b8035b5ad7e719950499f7815ad539382 Author: Alan Garny '' Date: Wed May 4 16:55:00 2011 +0100 Updated our Linux packaging as a result of upgrading to Ubuntu 11.04. Indeed, to package on Ubuntu 11.04 and then deploy on Ubuntu 10.04 '(which' we want to support since 'it'\''s' the current 'LTS)' requires the right version of libstdc++.so.6 to be used. commit 28943b39d2bf9ec5bbb63149023e4c2bb2bf6226 Author: Alan Garny '' Date: Wed May 4 12:58:53 2011 +0100 The audio and phonon libraries are not required anymore for Linux '(probably' as a result of my changing the Qt requirements in OpenCOR at some 'point).' commit dda7f4b43cbb6369b3c6eba8879a1305bfd7b8ad Author: Alan Garny '' Date: Wed May 4 12:20:54 2011 +0100 Slight improvement to the Shell script used to run a deployed version of OpenCOR '(this' was prompted from a deployed folder containing a space in its 'name).' commit a9e0f8a151ba6db69ed411c596837c58ff41c7b3 Author: Alan Garny '' Date: Wed May 4 12:00:11 2011 +0100 Some cleaning up of the main CMakeLists.txt file, as well as improved the packaging on Linux '(this' was prompted by the fact that Ubuntu 11.04 uses a different version of phonon than on Ubuntu '10.10).' commit a40f4ea4367267db34166b3484db030f6750b75f Author: Alan Garny '' Date: Tue May 3 21:58:11 2011 +0100 Some further cleaning up following the removal of the CellML DOM API 1.9 RC1 binaries. commit 06fef80ce4a56d32820cb43654737673f47b8871 Author: Alan Garny '' Date: Tue May 3 21:54:01 2011 +0100 Removed version 1.9 RC1 of the CellML DOM API binaries, since it 'won'\''t' be possible to fully integrate version 1.9 in OpenCOR '(see' 'https://tracker.physiomeproject.org/show_bug.cgi?id=2787).' commit 14f7785bb1ffdf5a13b567cc914c6b6e3567c2bf Author: Alan Garny '' Date: Mon May 2 15:29:16 2011 +0100 Updated the readme file. commit 904d05fdc9bfc93415bc1409a609edd06c9f05e4 Author: Alan Garny '' Date: Sun May 1 13:58:30 2011 +0100 Started integrating the pre-compiled CellML DOM API to OpenCOR. commit c27d63428bab109bca70892b71e0d31cfd4a0539 Author: Alan Garny '' Date: Sun May 1 12:05:14 2011 +0100 Slight update to the developer documentation. commit 5ce8b0b4dcbab07ea7c7ab7112b239c2465bb614 Author: Alan Garny '' Date: Sat Apr 30 23:45:51 2011 +0100 Simple renaming of variables in the various CMakeLists.txt files. commit 36c713949f49f1f2bf925f0e224d7d034a290652 Author: Alan Garny '' Date: Sat Apr 30 22:36:16 2011 +0100 Minor comment update to 3rd party CMakeLists.txt files. commit 487bfb171cd75bb88e2fb60aefc95d90b358ce54 Author: Alan Garny '' Date: Sat Apr 30 15:43:35 2011 +0100 Minor update to the user documentation. commit 7d1d6e209133afbecaaa31a6789be1939fd7f350 Author: Alan Garny '' Date: Sat Apr 30 10:43:14 2011 +0100 Updated the documentation, mainly to reflect our upgrade to Ubuntu 11.04 '(Natty' 'Narwhal)' from Ubuntu 10.10 '(Maverick' 'Meerkat).' commit 016528c3db10f0292d5c7e8fcb7a32713d8ea5c0 Author: Alan Garny '' Date: Fri Apr 29 15:38:07 2011 +0100 Updated the Oxygen icons to version 4.6.2 '(from' version '4.6.1).' commit f9de9c73cd32fcbb02308588304ee18450a9dbe9 Author: Alan Garny '' Date: Thu Apr 28 20:32:44 2011 +0100 Update QScintilla to version 2.5.1 '(from' version '2.5.0).' Minor updates to the developer documentation. commit 1f81c106db7ea2b36314bc9fbdadb5c217d8acb1 Author: Alan Garny '' Date: Thu Apr 28 20:05:02 2011 +0100 Minor update to the developer documentation. commit b4ddf2b7b4c32d6c8c9fe0899e2a38924bcc17cf Author: Alan Garny '' Date: Thu Apr 28 20:02:58 2011 +0100 Renamed the CellmlApi directory to CellmlDomApi '(better' name for what it 'is).' commit c5d9ff3583237b2c096e0fc77cee716ae63b2616 Author: Alan Garny '' Date: Thu Apr 28 19:56:37 2011 +0100 Updated the developer documentation '(following' the addition of the CellML DOM 'API).' commit 9e26fdeb77d088987f2827a6cd111cb1c6bac554 Author: Alan Garny '' Date: Thu Apr 28 19:43:22 2011 +0100 '(Simply)' added the CellML API binaries. commit 7c8a5b2dcf285e7b573441a9841d8934320158cc Merge: a27fed5ef 23dc1f86f Author: Alan Garny '' Date: Thu Apr 28 19:05:48 2011 +0100 Merge branch ''\''master'\''' of github.com:opencor/opencor commit 23dc1f86fff8582ed8537064ade38ebf8c22f172 Author: Alan Garny '' Date: Thu Apr 28 18:37:01 2011 +0100 Addressed the issue of Cmd+M not working on Mac OS X. Closes issue '#9.' commit a27fed5ef368a83afe6252ae5d37f04ce92ee9e6 Author: Alan Garny '' Date: Thu Apr 28 17:44:55 2011 +0100 Reset 'OpenCOR'\''s' version to 0.0.0. commit 4671ce0062b09890469d26f04fb2d085ea944d99 Author: Alan Garny '' Date: Thu Apr 28 15:58:25 2011 +0100 Updated the different style sheets for the documentation. Also updated the help widget error HTML file '(I' had completely forgot about 'it!).' commit 07efaa8692a74efcf2279e50d186bc2bfc1d942d Author: Alan Garny '' Date: Thu Apr 28 15:38:01 2011 +0100 Minor update to the developer documentation. commit a055deafc5379b68d1c2e00e5ada0ea7f6d5a122 Author: Alan Garny '' Date: Thu Apr 28 11:11:29 2011 +0100 Minor update to the developer documentation. commit 2cf0aaea87c77447958527cc62518074f25c1923 Author: Alan Garny '' Date: Wed Apr 27 16:57:13 2011 +0100 Slight updates to the user and developer documentations. commit a651b5f8f2643c7ca057774a00223d0e348311fa Author: Alan Garny '' Date: Wed Apr 27 14:52:27 2011 +0100 Updated the documentation following our move from SourceForge to GitHub '(which' is MUCH 'better!).' commit 4a2500fbf56b9216112b9f06f231baf4d7ba447d Author: Alan Garny '' Date: Tue Apr 26 10:13:49 2011 +0100 Cosmethic change. commit 9405d204423d4ff370e1044455faf3b22169494e Author: Alan Garny '' Date: Tue Apr 26 10:05:47 2011 +0100 Fixed issue '#11' -- Deleted files 'don'\''t' show up as such in the file organiser widget when starting OpenCOR. commit 54d1578e6d730b630707da9c961ea46da95480e1 Author: Alan Garny '' Date: Tue Apr 26 10:04:56 2011 +0100 Made the tabs in the central widget movable. commit 14f5a9fd1c416bc8e468127a30c2cc0c3f42ccef Author: Alan Garny '' Date: Sun Apr 24 00:36:56 2011 +0100 Updated the two CellML files that are distributed as examples. Mainly did that, so that I could change their write access from 644 to 444. commit 7572b76169538a16c0a45606213a81a010db58bc Author: Alan Garny '' Date: Fri Apr 22 18:04:49 2011 +0100 Limit the number of recently opened files shown in our menus, and from what I can tell this finishes our work on the list of recently opened 'files!' commit 3809768602b03042e482a5979d8a3833b3b26f0b Author: Alan Garny '' Date: Fri Apr 22 17:56:13 2011 +0100 Now keep track and retrieve our list of recently opened files. commit d173fbfa4a71f74eb1f85d3ab72c03e21730b6e5 Author: Alan Garny '' Date: Fri Apr 22 17:26:36 2011 +0100 Improved our implementation of our list of recently opened files. commit 059c1001d757401054cc4c4747f215d17e8c56a8 Author: Alan Garny '' Date: Fri Apr 22 17:16:45 2011 +0100 Some more work towards the list of recently opened files. commit 09f13e7b954f918c07de285abbc748ee73704a6a Author: Alan Garny '' Date: Fri Apr 22 16:57:46 2011 +0100 Still working towards the recently opened files. Now update the main window title with the name of the currently active file, if any. commit f83efca20b51f645af279b40c68541943fbcb2da Author: Alan Garny '' Date: Fri Apr 22 15:58:31 2011 +0100 Still working towards the list of recently opened files. commit bc770f3a1691d46fc76379d4013ff80972aa6ae0 Author: Alan Garny '' Date: Fri Apr 22 15:56:22 2011 +0100 Fixed a small problem with our central widget '(we' 'didn'\''t' keep track of the name of a file using its native 'format).' commit 39c86d170d07340093696959d2a44c7a7708d923 Author: Alan Garny '' Date: Fri Apr 22 14:17:10 2011 +0100 Oops, mninor mistake. commit 0f05b38c3cd1f263ef3d28727456954e0c0aaca4 Author: Alan Garny '' Date: Fri Apr 22 14:15:40 2011 +0100 Working towards implementing a list of recently opened files. commit 3e50f176d0340c1a79964930871f94116e8986b8 Author: Alan Garny '' Date: Fri Apr 22 09:06:52 2011 +0100 Done with renaming DocumentManager to FileManager. commit d31b7d14ff44a3a352efa87c0c3a39b587e52118 Author: Alan Garny '' Date: Fri Apr 22 09:00:18 2011 +0100 Started work on renaming DocumentManager to FileManager '(still' need to be 'completed).' commit 785e91f898e389a39b67f7d0fe796ac1ead5d7c0 Author: Alan Garny '' Date: Thu Apr 21 19:32:19 2011 +0100 Moved our main document manager from MainWindow to CentralWidget, since everything is actually done there '(e.g.' open/close 'files).' Fixed a small problem in the loading of the 'CentralWidget'\''s' settings. commit 697adc467d0288fae97c9ce1efb1efb9623a5709 Author: Alan Garny '' Date: Thu Apr 21 18:41:42 2011 +0100 Reworked some code related to our central widget. Also completed the work on keeping track of opened files. commit e36ffe09ba7f21ae58bf7a4314a525baf3faff25 Author: Alan Garny '' Date: Thu Apr 21 16:12:20 2011 +0100 Working towards keeping track of opened files. commit 1711b4066877ffe2bdf4527262fdef69a89c66e2 Author: Alan Garny '' Date: Thu Apr 21 09:01:37 2011 +0100 Slight improvement to the file browser widget when it comes to selecting several entries and needing to deselect folders. commit 79b355e785e5a0b4f34f4a6a27fd5a7546294a71 Author: Alan Garny '' Date: Wed Apr 20 17:51:48 2011 +0100 Added a timer to our document manager so that it can regularly check the status of the documents it monitors. Made use of our document manager to display the right file icon '(i.e.' existing file or non-existing 'file)' within our file organiser widget. commit 8c911118048c8ebda172af88db9e55359072c31a Author: Alan Garny '' Date: Wed Apr 20 17:24:48 2011 +0100 Added a new icon to show that a file has been deleted. commit aa86fb7cf00dc8ef0f93f9c7a05478ddb9ff3a90 Author: Alan Garny '' Date: Wed Apr 20 17:03:02 2011 +0100 Some cleaning up. commit 678800de52ffb5d0f679ec9e5346c41ae9052cff Author: Alan Garny '' Date: Wed Apr 20 16:48:51 2011 +0100 Our document manager class can now check the new status of a document. commit eeb71a0f4f9b54a2a1c08229883920421fa626b0 Author: Alan Garny '' Date: Wed Apr 20 16:22:56 2011 +0100 Can now compute the SHA1 value of file in the document manager. commit c58eb255c6b1372ce6076493d29e4f5135b4c7bd Author: Alan Garny '' Date: Wed Apr 20 13:26:21 2011 +0100 Started work on taking advantage of our document manager '(which' still needs further work 'itself)' within our file organiser widget, so that we can show the user whether a file is still physically present or not. commit 3f16459d6d3f7054d00e368530a348416ccba9df Author: Alan Garny '' Date: Wed Apr 20 11:35:31 2011 +0100 Keep track / restore the expanded state of an item. This is used when moving items around within the file organiser widget. Indeed, the way we currently move an item '(i.e.' using takeRow and 'insertRow/appendRow)' 'doesn'\''t' keep track of the expanded state of folder items, so... commit b0d6a1ed0937cf28ea7c3e6d6aecf7192220629e Author: Alan Garny '' Date: Wed Apr 20 10:12:25 2011 +0100 Fixed the issue of moving several items around within the file organiser widget '(we' were relying on the index of those items while we should have relied on the items 'themselves).' commit b1736844b59893e5f34d356ed069644b31e88717 Author: Alan Garny '' Date: Tue Apr 19 17:57:01 2011 +0100 Minor comment change. commit 5d17ee4b4f3df90aa047a8a85a4b17720186a2fd Author: Alan Garny '' Date: Tue Apr 19 17:45:46 2011 +0100 Fixed a problem which occurred when trying to move an item within its location '(in' the file organiser 'widget).' commit 5e3e076b89cfdfb439270db703e1a0d817a905ae Author: Alan Garny '' Date: Tue Apr 19 17:38:40 2011 +0100 Improved the drag and drop feature for the file organiser widget '(one' could drop an item on one of its 'children!).' commit f5e6900929eecf8fbc75ed81a19af6d873e2d39a Author: Alan Garny '' Date: Tue Apr 19 16:17:32 2011 +0100 Addressed the issue of a moved '(file)' item already present at the destination '(drag' and drop an item from and to our file organiser 'widget).' commit 1ce3f681ed1aab93a8c8b315c4c4e4e95a0e95e5 Author: Alan Garny '' Date: Tue Apr 19 15:09:28 2011 +0100 First go at allowing the moving around of items in the file organiser widget. This seems to be working pretty well, even though there is moved folders end up collapsed. Also, we 'don'\''t' currently check that a file item is already present at the destination. commit 54642e4fe5cb578147f424845a6ce9d11fc16262 Author: Alan Garny '' Date: Tue Apr 19 13:39:39 2011 +0100 Added some code to clean a list of indexes to be moved around within the file organiser widget '(as' a result of a drag and drop 'operation).' commit d1f92691e6586177c8b3f0020a4a7c1d29f84b00 Author: Alan Garny '' Date: Tue Apr 19 12:47:17 2011 +0100 Simple refactoring. commit 486a31f795fc47fa8afe590362d6c246d1fdf03a Author: Alan Garny '' Date: Tue Apr 19 12:16:13 2011 +0100 Slight improvement to encode/decdode of mime data for the file organiser widget. Some minor cleaning up. Allow the dragging of objects only above/on/below certain items within FileOrganiserWidget::dragMoveEvent. commit 8047f550b6ba3efc33288624bc04a1705c0d4593 Author: Alan Garny '' Date: Tue Apr 19 11:12:57 2011 +0100 Keep track of the currently selected item in the file organiser widget. commit 1010ba1f64a1da0ec0bcc8a80c7c1ca7e0878919 Author: Alan Garny '' Date: Tue Apr 19 09:57:11 2011 +0100 Some simple refactoring in the perspective of keeping track of the selected item in the file organiser widget. commit 44acc6b03bc019a87abd12477ff842a81e6a1be2 Author: Alan Garny '' Date: Mon Apr 18 17:43:32 2011 +0100 Simplified the encoding of the mime data for our file organiser widget, since what we want is to be able to retrieve the QModelIndex values of the dragged items, not the information they hold. Implemented the decoding of the mime data. commit 7141fd7a5d6c54592d5bf5768531a003304465e0 Author: Alan Garny '' Date: Mon Apr 18 16:46:35 2011 +0100 Done '(I' 'think!)' with the encoding of the mime data for the file organiser widget. commit 2d9819d15ec0580e8edb870ad0a96d6a7b8d7bd8 Author: Alan Garny '' Date: Mon Apr 18 09:42:25 2011 +0100 Moved a comment. commit d3a2251d9c292dbbc7f519a81bceb2de9897b5b9 Author: Alan Garny '' Date: Sun Apr 17 17:50:03 2011 +0100 Improved the deselection of folders '(I' had forgotten to reimplement 'mousePressEvent!).' commit b231bcf5dd6644d6ca10795375fadc470d6ae081 Author: Alan Garny '' Date: Sun Apr 17 11:13:38 2011 +0100 Ok, ping pong game 'here!' The last code did indeed make things faster on Windows, but it 'didn'\''t' make any difference on Linux and Mac OS X '(the' previous code was already 'fast!).' So, thanks Windows for 'that!' Also, for some reason, the new code 'didn'\''t' allow for the file browser widget to scroll ''\''properly'\''' when selecting items using the mouse. Bottom line, the old code is not that bad in terms of performance '(on' 'Windows),' so reverted to 'it!' commit e97e1df61739725ae9d5671ba67ef10eb53b2ac5 Author: Alan Garny '' Date: Sun Apr 17 10:48:57 2011 +0100 Greatly improved the speed '(on' Windows at 'least)' of the last committed code '(which' was about deselecting any folder item in the file browser widget whenever more than one item was selected, since we 'didn'\''t' want to give the impression that we could ''\''open'\''' or drag 'folders).' commit 96cbcf360bd5332eddc07e070a531f88ab5f5f21 Author: Alan Garny '' Date: Sun Apr 17 09:46:20 2011 +0100 Deselect any folder item in the file browser widget whenever more than one item is selected, since we 'don'\''t' want to give the impression that we can ''\''open'\''' or drag folders. commit 94eb6c4fe6288004324cb72d09bdbd702aa490e6 Author: Alan Garny '' Date: Sun Apr 17 09:08:58 2011 +0100 Some cleaning up. commit 5aceada23233eb264cf08e697ab67bc72cd788fd Author: Alan Garny '' Date: Sat Apr 16 23:29:53 2011 +0100 Minor cleaning up. commit 08e5c14c877666b34c14bf10a507384f18af0572 Author: Alan Garny '' Date: Sat Apr 16 20:15:52 2011 +0100 Modified the file browser widget by having its 'model'\''s' flags method reimplemented rather than its mimeData method. Indeed, 'it'\''s' better to make a folder not draggable than removing a folder from a list of dragged objects. commit 053dc2e70d57d7f2d432c225ad701dd47b909a74 Author: Alan Garny '' Date: Sat Apr 16 18:11:42 2011 +0100 Some simple refactoring. commit c48a0478f927d9d0d88656ec707fac3e1ab4c92f Author: Alan Garny '' Date: Sat Apr 16 16:48:26 2011 +0100 Working towards moving items around within the file organiser widget. commit 1620666ccf489796a75972b01e85a0cea7c993ef Author: Alan Garny '' Date: Sat Apr 16 10:25:17 2011 +0100 Removed references to SBML. Though we definitely want to support SBML at some point, 'it'\''s' not going to be done in the immediate future '(CellML' 'first!).' So... commit 3789364fb7cc51336d46d6ba55ba917b94b48e9a Author: Alan Garny '' Date: Sat Apr 16 08:51:12 2011 +0100 Resized the size of our presentation at the CellML 2011 Workshop '(I' had forgotten to resize it in the first 'place!).' commit 09171d3bc6e96b1a49c85b02dd579b1589227990 Author: Alan Garny '' Date: Fri Apr 15 17:48:08 2011 +0100 Fixed a problem that got introduced at some point and which was related to the collapsing of empty folders following the deletion of items in the file organiser widget. Fixed a bug in Qt '(?)' which 'didn'\''t' make the drop indicator disappear upon dropping. Can now drop external objects anywhere on our file organiser widget '(i.e.' above/on/below a folder, above/below a file or on the invisible root 'folder).' commit 61c0d80e6f5233a766ef43cdf3b34563b0743332 Author: Alan Garny '' Date: Fri Apr 15 14:14:35 2011 +0100 Made it possible to see the drop indicator for external objects being dragged on our file organiser widget. commit cb75307d76c5c74c388fe6a36a77f6a06555d56d Author: Alan Garny '' Date: Fri Apr 15 12:03:41 2011 +0100 - Now check that there are effectively objects to drop on the file organiser widget. Indeed, the user might perfectly be trying to drag and drop folders '(and' no 'file)' from our file browser widget onto our file organiser widget. If so, then this 'shouldn'\''t' be allowed, since there is effectively nothing to drop. commit a1a40a38970b102a9930e2e9805a97e4bc16dcc5 Author: Alan Garny '' Date: Fri Apr 15 12:02:36 2011 +0100 Minor cleaning up. commit 7d27deaa0b78ede1fe90790198fb1c306cf56a27 Author: Alan Garny '' Date: Thu Apr 14 18:45:42 2011 +0100 Have our own QFileSystemModel-based model for our file browser widget. The idea of that QFileSystemModel-based model is to have its mime data not containing any folder. So, we can ''\''select'\''' folders, but 'can'\''t' drag them. commit 62934632241e12b2bb6af2e0638a664a91e6a725 Author: Alan Garny '' Date: Thu Apr 14 17:44:35 2011 +0100 Worked some more on our file organiser widget, so that it can handle drag n drop properly. commit 6b072195861a1d80accf64e1394d4c5640a5d5a3 Author: Alan Garny '' Date: Thu Apr 14 17:41:40 2011 +0100 Added a comment. commit 007f9ce591f287025a3643200f7dde8369eda27c Author: Alan Garny '' Date: Thu Apr 14 15:31:03 2011 +0100 Reminder to myself about the restart solution. commit eb339593696b27ae01fe56adf83893c563664426 Author: Alan Garny '' Date: Thu Apr 14 13:33:24 2011 +0100 Reformatting of code. commit f3b4812c420690059784e5d0e010983fefe10a7c Author: Alan Garny '' Date: Thu Apr 14 10:59:24 2011 +0100 I thought it would be a good thing for folders not to be selectable in the file browser widget, but in the end it makes it difficult for the user to see that a folder is the currently ''\''selected'\''' item. Sure, we 'don'\''t' want to give the impression that you can drag folders, but well... Anyway, we are now re-allowing the selection of folders... commit 338b506daeccd6840edb976c70f585c7c2206457 Author: Alan Garny '' Date: Wed Apr 13 20:17:44 2011 +0100 Updated the user documentation. commit e7b18d6aaadcbcee65c12db0ff08d0caa172d216 Author: Alan Garny '' Date: Wed Apr 13 19:54:01 2011 +0100 Updated a comment. commit 12d2867b4582ad87e9f59b3eb23b4e051421eb2b Author: Alan Garny '' Date: Wed Apr 13 18:22:51 2011 +0100 Fixed a couple of memory leaks in the main procedure. Some cleaning up. commit e9b661734c1c92f058b87d47f3b5de66b75f78e0 Author: Alan Garny '' Date: Wed Apr 13 18:10:10 2011 +0100 Improved the restart of OpenCOR. Cleaned up some code. commit b1ab7ea685a45e164395bf34e4df22f3eed724e1 Author: Alan Garny '' Date: Wed Apr 13 17:18:05 2011 +0100 Cosmetic change. commit e96a144cf549e763b1c2e7ef6df42f79ce6297b9 Author: Alan Garny '' Date: Tue Apr 12 19:59:20 2011 +0100 Minor improvement to the start/restart of OpenCOR on Mac OS X. commit a8ad2b52670e4fd979e0bb2232c84a88fcf8f41f Author: Alan Garny '' Date: Tue Apr 12 19:22:11 2011 +0100 Some straightforward refactoring. commit 7957f50f67e8cc5df13380e745b74476fbfc4ae8 Author: Alan Garny '' Date: Tue Apr 12 17:48:48 2011 +0100 Added the CellML Workshop 2011 presentation to the documentation. commit 83a2fe93a608b8a710c98966e9a1d47bef306f1f Merge: 23203ca0d 58b97c5fb Author: Alan Garny '' Date: Tue Apr 12 14:52:56 2011 +0100 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 23203ca0d7f5128fc44fafa0bdad163bbb840a56 Author: Alan Garny '' Date: Tue Apr 12 14:52:15 2011 +0100 Improved the resetting of OpenCOR. During a live demo, OpenCOR 'didn'\''t' properly restart on Windows '(it' was fine on 'Linux).' It was most probably because of my 'computer'\''s' CPU being quite busy at the time. Still, the new solution to the resetting of OpenCOR should work no matter what since we restart OpenCOR just before returning the result of the execution of OpenCOR. In other words, we 'can'\''t' do 'better!' commit 58b97c5fb316989302e4975e71aaa24d3394bac4 Author: Alan Garny '' Date: Mon Apr 11 20:52:16 2011 +0100 Minor update to the developer documentation. commit 9f6ec8463d48b94d6de1303b414610d033d5b243 Author: Alan Garny '' Date: Mon Apr 11 16:42:50 2011 +0100 Minor update to the developer documentation. commit bb48946ee4df6fb6007a50fb7ad40ca9c2992b6a Author: Alan Garny '' Date: Mon Apr 11 16:11:03 2011 +0100 Minor update to the developer documentation. commit c730a6950a7f06e7f0eccc53c7b7ab254c384c81 Author: Alan Garny '' Date: Mon Apr 11 12:36:08 2011 +0100 Minor update to the developer documentation. commit 6f0bce1dd35a12e2f6e43288d3c65dcecce5d194 Author: Alan Garny '' Date: Fri Apr 8 19:31:12 2011 +0100 Added a comment. commit d3fed4542c7bf4f31e215d6bd2e6d37619056c58 Author: Alan Garny '' Date: Fri Apr 8 18:31:18 2011 +0100 Just committing some code which needs refactoring, but at least there is a trace of it. commit d4a655fe9b62d430def8bca8d6dcb5a18369f3e1 Author: Alan Garny '' Date: Fri Apr 8 16:24:19 2011 +0100 Actually, some File actions '(in' the main 'window)' ought to always be enabled. commit c46dea396a253d4adb0cf0191c285979f5edffa6 Author: Alan Garny '' Date: Fri Apr 8 16:22:58 2011 +0100 Updated the enabled state of the various actions in the main window. commit 5a2cfa0bba7f9adcd36d13d66ba52025be9ec83e Author: Alan Garny '' Date: Fri Apr 8 16:14:56 2011 +0100 Some cleaning up and some further work towards allowing the dragging and dropping of folders/files from within the file organiser widget. commit 5f30796e376caa905bdad3604d4448f64eb27c38 Author: Alan Garny '' Date: Fri Apr 8 12:39:29 2011 +0100 Some cleaning up. Started work on moving folders/items in the file organiser window. Collapse folders in FileOrganiserWidget after their contents has been removed. commit bfbfd0effc6fdc69b19615b0e02c440b7f5793a7 Author: Alan Garny '' Date: Fri Apr 8 11:42:05 2011 +0100 Straightforward refactoring. commit db3e54eeebe59534bf100520000d1c1e8b328520 Author: Alan Garny '' Date: Fri Apr 8 11:38:41 2011 +0100 Updated a comment. commit 0a0acaa180424ffc48b245fc05d02053b254f6ba Author: Alan Garny '' Date: Fri Apr 8 11:32:13 2011 +0100 Fixed a small issue CentralWidget::closeFile '(Oops!!).' commit 2c4faf6452e9cf62ffe295e64143137767798e0b Author: Alan Garny '' Date: Fri Apr 8 10:44:47 2011 +0100 Addressed the issue mentioned in the last commit. commit 1d78b93bcfd264ea12369c87deceb44ba675559f Author: Alan Garny '' Date: Fri Apr 8 09:16:24 2011 +0100 Improved our tab widget '(central' 'widget)' by having the editor '(tab'\''s' 'widget)' getting the focus upon selecting a new tab. There is still the issue of another widget '(other' than our tab 'widget)' having the focus and then clicking on the active tab. This would, ideally, give the focus to the 'tab'\''s' widget, but it 'doesn'\''t' '(unless' one clicks on a non-active tab and 'back).' Still looking for a solution for this. commit cb4f6071683fdacdab04193312be78ffaee0ad97 Author: Alan Garny '' Date: Thu Apr 7 23:58:57 2011 +0100 Tabs in the tab widget '(central' 'widget)' now distinguish between CellML files and other files '(based' on the their complete 'suffix).' commit cb612794a4f4d6b685e611f2b92668882b085acf Author: Alan Garny '' Date: Thu Apr 7 23:15:14 2011 +0100 Improved the file browser widget '(as' a result of folders not being selectable 'anymore).' commit ddcc74ec57df7801a6762f78d870e3584f658ca7 Author: Alan Garny '' Date: Thu Apr 7 22:55:34 2011 +0100 Give the focus to the editor when a new file is created or activated. commit 0f6d869b2c071f71f840584d535c2639a9f4ff86 Author: Alan Garny '' Date: Thu Apr 7 22:41:17 2011 +0100 Make use of a default font family and size '(operating' system 'dependent)' for the editor. commit 660db21b5679bbe0d392a5c884cea35152f08af0 Author: Alan Garny '' Date: Thu Apr 7 18:48:13 2011 +0100 Minor improvement to the central widget after having tested things on Mac OS X. commit 11fe998ff1a1683e506203eb59ebc30f8a8a1006 Author: Alan Garny '' Date: Thu Apr 7 18:36:59 2011 +0100 Have the enabled state of some '(working)' actions updated whenever required. commit 7d57057691ec01fa6c935bce9e6ab53ebec84a9d Author: Alan Garny '' Date: Thu Apr 7 17:46:49 2011 +0100 Some cleaning up. Central widget: can close a file in the central widget. Can also activate a file that was already opened. commit 170a07603ed3478a18acc6eda43dc437020319cc Author: Alan Garny '' Date: Thu Apr 7 15:55:32 2011 +0100 Made the central widget '(rather' than the main window ')the' dropping region for dropping files on OpenCOR. This means that, now, it 'doesn'\''t' look like one could drop files on, say, the help window or, worse, the file browser window '(which' is definitely not something we 'want!).' commit 5f5ba0cd7a30d3c98e3d3d283de89765a87698f8 Author: Alan Garny '' Date: Thu Apr 7 15:40:18 2011 +0100 Some cleaning up. Allow for files '(but' not 'folders)' from the file organiser to be dragged and dropped on the main window '(this' should be the central widget in the 'future).' commit dfe3f530bfdfc495450b20c05374b43c0a64c101 Author: Alan Garny '' Date: Thu Apr 7 13:48:41 2011 +0100 Support our own mime type for the items in the file organiser widget '(this' will allow us to accept the dropping of items from the file file organiser on 'OpenCOR).' commit a5980cb6b639913fc48d378501ff8d0089c4b35b Author: Alan Garny '' Date: Thu Apr 7 12:32:31 2011 +0100 Reimplemented the supportedDropActions method in FileSystemModel to only allow dragged items to be copied to their target. commit 16fd03eaea54b4e35f4c17c581acff505371bb6d Author: Alan Garny '' Date: Thu Apr 7 12:17:44 2011 +0100 Some minor cleaning up. commit 2977ad96c85afb0d5a86bc360b9e2905e76416c2 Author: Alan Garny '' Date: Thu Apr 7 11:41:44 2011 +0100 Have our own version of QFileSystemModel which 'doesn'\''t' allow folders to be selected/dragged, only files. commit 415b0714c086e6c9753fda6b961899ca2708b069 Author: Alan Garny '' Date: Thu Apr 7 10:12:37 2011 +0100 Improved the pixmap associated with the dragging action in TreeView. commit c2dedc5fc715e87a654a53731079aee4f76b9c31 Author: Alan Garny '' Date: Wed Apr 6 18:06:17 2011 +0100 Improved our new TreeView class. commit e2dea8f817bd4fd95cd0797aca5235d7d9a1c179 Author: Alan Garny '' Date: Wed Apr 6 17:08:21 2011 +0100 Made FileBrowserWidget to inherit from our new TreeView class. Also made FileBrowserWidget to accept objects from being dragged from it. commit 8c4ccba12f9c83ad029dbe93d8f6cb5e7358f371 Author: Alan Garny '' Date: Wed Apr 6 17:03:43 2011 +0100 Moved the startDrag code from the FileOrganiserWidget class to the new TreeView class. commit 07312988e50ac0b1024b84df5949eecee2e3871b Author: Alan Garny '' Date: Wed Apr 6 16:53:10 2011 +0100 Working towards the TreeView class which inherits from QTreeView and CommonWidget, and which will reimplement QAbstractItemView::startDrag. Some cleaning up. commit 1c4d747f84bff6930bd86473e2e8cf59aeebf3e4 Author: Alan Garny '' Date: Wed Apr 6 15:38:17 2011 +0100 Might have found a way to deal with the dragging action from the file organiser/browser windows. For now, I have implemented something for the file organiser, but we will have to put that in a new QTreeView-based class, so that the file browser window can also take advantage of it. Otherwise, the drag pixmap is not great, but sufficient at this stage '(and,' most importantly, should work fine on all three 'platforms).' commit 26a549eae997911c7ff53683e79fa419b81bd140 Author: Alan Garny '' Date: Wed Apr 6 10:44:29 2011 +0100 Slight update to the user documentation. commit 468de5e680b7e9ab4505764e1f09b228a8213ff5 Author: Alan Garny '' Date: Mon Apr 4 10:02:17 2011 +0100 Decided to give up on having shortcuts in windows other but the main window. At least for now. The idea was to have the same shortcut '(e.g.' 'Ctrl+C)' for different windows '(e.g.' the main window and the help 'window),' but it seems to be a bit tricky to implement '(even' when changing the value of 'QAction::shortcutContext).' Anyway, there are more important things to do for now, so this is something that might revisit at some point... commit decab190bcc676c92ef7f7681086c9f11ca1034b Author: Alan Garny '' Date: Sun Apr 3 19:08:47 2011 +0100 Updated a couple of shortcuts '(for' the home page/directory in the help and file browser windows, 'respectively).' Implemented a way to have the same shortcut for different actions '(e.g.' 'Ctrl+C)' in different widgets '(e.g.' the main window and the help 'window).' This is not quite satisfactory though '(I' 'can'\''t,' for example, get the Alt+Home sequence in the help window and the file browser window to work 'properly).' So, this will need refining... maybe using 'eventFilter?' commit 078f0aec9f5b5ddd59087d47637db582b033a107 Author: Alan Garny '' Date: Sun Apr 3 15:20:59 2011 +0100 Some minor cleaning up in the main CMakeLists.txt file. Also updated the winConsole/CMakeLists.txt file for debug/release versions. commit 305c32b1af32bbe104fdb573b39be31090031225 Author: Alan Garny '' Date: Sun Apr 3 12:43:11 2011 +0100 Updated QScintilla from version 2.4.6 to version 2.5 '(which' uses the latest version of 'Scintilla).' Also got the lexers to work '(i.e.' if we open a CellML file, we can now see some syntax highlighting even though this was a quick and dirty way of showing things 'off).' commit b5999c4bfe51fba14b062b6358fcd0541b9f5c9a Author: Alan Garny '' Date: Thu Mar 31 12:51:54 2011 +0100 Updated the documentation by providing links to the Git repository rather than local files '(useful' for the website version of the 'documentation).' Some minor updates and cleaning up. commit 219d36b8d533d8412216b6d127d60fd7e0e8a36f Author: Alan Garny '' Date: Wed Mar 30 23:22:32 2011 +0100 Forgot to change the size of the icons on the new toolbars '(Edit' and 'Run)' for Mac OS X. commit 6e9d35cde0b1e0af7df8bc511710db9bca5f0073 Author: Alan Garny '' Date: Wed Mar 30 17:49:35 2011 +0100 Added/updated shortcuts for some actions. Note that some actions share the same shortcut '(e.g.' 'Ctrl+C).' This is completely fine '(as' long as the action is the same, e.g. to copy 'something),' but 'doesn'\''t' yet work. commit 45980f807416a9c83f3df33727648e0257b7ace0 Author: Alan Garny '' Date: Wed Mar 30 12:22:11 2011 +0100 Added the SBML logo as a resource. commit c9d7f81c85cb62e5a707109e890618802f00955c Author: Alan Garny '' Date: Tue Mar 29 16:18:19 2011 +0100 Added a debug mode to the Run menu/toolbar. Added an Edit menu/toolbar. commit 76eaac945d8c6ae94a257b5753eba5afff70eb25 Author: Alan Garny '' Date: Tue Mar 29 11:17:34 2011 +0100 Added a Run menu and toolbar. commit 42d20184dddbdb698c6888845ce7b10a30a111e8 Author: Alan Garny '' Date: Tue Mar 29 10:19:14 2011 +0100 Added a print toolbar button. commit 7f73232563f3f1e2b1198dd8587d5b2457ff51df Author: Alan Garny '' Date: Tue Mar 29 10:08:22 2011 +0100 Added a print menu item. commit b6064541dd0fe10a63a3ba05bf976b4e5ad8bbf3 Author: Alan Garny '' Date: Fri Mar 25 17:19:44 2011 +0000 WARNING - Quick and dirty way to get a file opened in an editor '(for' demonstration purposes tomorrow in 'Cambridge).' This will definitely have to be removed 'afterards!' commit 5ad5a996978df5374c9ff82c1a52e6963a3d6ef4 Author: Alan Garny '' Date: Fri Mar 25 16:26:59 2011 +0000 Main window: created a new widget which inherits from QTabWidget. The idea being that if the widget 'doesn'\''t' have any tab associated with it, then we display our CellML logo otherwise we revert to the default paint handler. Added an instance of that new tab widget to our central widget '(from' which we took the logo 'code).' commit ea01fa9a60d4dbc361f14df430b1ed0039770628 Author: Alan Garny '' Date: Fri Mar 25 15:19:37 2011 +0000 Main window: some further work on the opening of files. commit 99ac9c58317afb53d5a59bc83b3d36dd7782ed01 Author: Alan Garny '' Date: Fri Mar 25 14:32:36 2011 +0000 Main window: renamed the filesOpened slot to openFiles. commit 78652b8de4f05968754cbcf4a9ae59c630e41321 Author: Alan Garny '' Date: Fri Mar 25 14:30:05 2011 +0000 Main window: working towards opening files. Slightly improved the document manager as a result. commit 8c29341595bc33e0a6e806fa13d27d45589e6804 Author: Alan Garny '' Date: Fri Mar 25 14:21:15 2011 +0000 Main window: removed an obsolete function. Improved the handling of the dropping of files by making use of the filesOpened slot. commit 1ddf5bad660d929c77147c05fc873f4bde9e4fae Author: Alan Garny '' Date: Fri Mar 25 13:39:13 2011 +0000 File browser widget: what I thought fixed the problem with determining when the loading of the directories 'didn'\''t' work on Mac OS X, so did it in a different '(and' better, in 'fact)' way. commit 050276337a26aab06994d738eed43d22bf1c5ca7 Author: Alan Garny '' Date: Fri Mar 25 11:42:40 2011 +0000 Updated the documentation after having registered a domain name for OpenCOR: http://www.opencor.ws/. commit 8268f1af9abad4aa010284ab0ab6cf0a94cfbc5e Author: Alan Garny '' Date: Fri Mar 25 09:17:36 2011 +0000 File browser widget: fixed a problem with determining when the loading of the directories is done when the initial item is a file '(everything' seemed to be fine with an initial folder even though it 'wasn'\''t' the end of the loading of the directories 'wasn'\''t' accurately dtermined which it now 'is).' commit d8144c60f7043c66fb51b90a5279e658a94df8a9 Author: Alan Garny '' Date: Fri Mar 25 08:33:15 2011 +0000 File browser window: improved the code for keeping track of the previous item '(so' that the user can go back to it, 'etc.)' by using disconnect rather than a boolean. commit 4df6a9f8ae701fac50f2162040d8ac07c8df0195 Author: Alan Garny '' Date: Fri Mar 25 00:39:35 2011 +0000 File browser widget: refactored and improved the loading of settings code. commit fbfb0652e79ea3abe5e9ecc2a4b8eabe67154256 Author: Alan Garny '' Date: Thu Mar 24 23:51:08 2011 +0000 Some trivial refactoring of code. commit 0d15395193aadd891dc075df3ea32ec2357cb6c4 Author: Alan Garny '' Date: Thu Mar 24 17:21:23 2011 +0000 I had forgotten how to ''\''properly'\''' capture Cmd+Down on Mac OS X... commit d48e851aa7994974755681cf4d94a56203bbc3a1 Author: Alan Garny '' Date: Thu Mar 24 16:46:16 2011 +0000 File organiser window: as for the file browser window, we can now ''\''open'\''' selected files by pressing the enter/return key. commit cc1f9ca73166ed7f84b1a9c4e7a80f65bf41aea1 Author: Alan Garny '' Date: Thu Mar 24 16:24:17 2011 +0000 File browser window: can now ''\''open'\''' one or several fiels by first selecting them and then pressing the enter/return key. This also required remaking the file browser widget focusable which, in turn, required showing the focus on all the columns at once '(rather' than individual cell which looked really bad considering the purpose of this 'widget).' commit fd645aebc808e0cf90ae8d1a76852309828559b5 Author: Alan Garny '' Date: Thu Mar 24 15:34:41 2011 +0000 Trivial refactoring. commit e9f40965a07fe9353783f7754f2cb4e7917e63b7 Author: Alan Garny '' Date: Thu Mar 24 15:24:34 2011 +0000 File browser window: fixed a small '(weird)' problem. commit 4cdf9306b0527df0cabfd29a9af692fae5e277ca Author: Alan Garny '' Date: Thu Mar 24 13:53:29 2011 +0000 File browser/manager windows: Allow for files to be double clicked, and letting people know '(through' the emission of a 'signal)' that it has been the case. From there, within the main window, we have a slot that connects to that signal, to handle it '(nothing' is currently being done to actually handle the double clicking of the file 'though).' commit cd82299f5871388158e1d8f5863363f88e09edde Author: Alan Garny '' Date: Thu Mar 24 12:49:18 2011 +0000 File organiser widget: have the icon of a folder reflecting its expanded/collapsed state. commit 2942b753765e45866e0c46a8b7d0dd5f64ba2551 Author: Alan Garny '' Date: Wed Mar 23 19:23:41 2011 +0000 Fixed a minor issue with the about box under Linux which got introduced as a result of some old refactoring. commit 426d96855a5dc166dd3c08584b10ef89115cd2e7 Author: Alan Garny '' Date: Wed Mar 23 18:07:55 2011 +0000 Added a few more icons. '(That' Oxygen icon set is actually rather 'cool!)' commit eedecf95936a92fb93c9c2f935ed7755ab81cbd1 Author: Alan Garny '' Date: Wed Mar 23 16:12:44 2011 +0000 Forgot to remove an icon that has been replaced by another. Otherwise, we are sticking to the Oxygen icon set indeed, since the Crystal one 'didn'\''t' look as good. Still, the Oxygen set is very rich, so 'it'\''s' a good choice in the end. commit 305c89da8e3ef2404605a6f263a6ea595875540c Author: Alan Garny '' Date: Wed Mar 23 16:11:07 2011 +0000 Added a few more icons to the application. commit 79a88cc06abb05a54fbf73618f952b6ef28b9804 Author: Alan Garny '' Date: Wed Mar 23 14:40:15 2011 +0000 Reverted the recent changes to QtMmlWidget. The original code was 'correct!' commit c8ddf602d0c23197dc5ef20f77fd5fcebb34238e Author: Alan Garny '' Date: Wed Mar 23 13:38:11 2011 +0000 Replaced the Boomy icon set with the Oxygen one. Not sure I like it 'though!' Might end up using the Crystal icon set. commit 4b76af9ec436a52e6da0d895657ea41d997d5217 Author: Alan Garny '' Date: Wed Mar 23 11:59:31 2011 +0000 Ok, we are going to keep using the ''\''heart'\''' icon for the application icon. commit 6394fb35a0b8d60be77e46bd44c7164d831b2367 Author: Alan Garny '' Date: Wed Mar 23 11:35:50 2011 +0000 Updated the developer documentation with regards to the third party libraries we are using. Note: we are going to replace our use of the Boomy multiplatform icons with the Oxygen 4.6.1 icons, as reflected in the documentation but not yet in the source code. commit 8a89f33f7ce47910322898d479bb8c99ad1d91c8 Author: Alan Garny '' Date: Wed Mar 23 11:32:32 2011 +0000 Updated our copy of QtMmlWidget. commit b8bdb964c6e9c04e3981bc2d4e35e02015fb2831 Author: Alan Garny '' Date: Wed Mar 23 10:55:39 2011 +0000 File organiser widget: allow the dropping of symbolic links. commit 2973e6c0495988bee12312373a03b7b529fc447b Author: Alan Garny '' Date: Tue Mar 22 20:48:53 2011 +0000 File organiser widget: expand the folder where one drops a file. commit 23b7d1a61029942a8aabb444f7f563ff529973b6 Author: Alan Garny '' Date: Tue Mar 22 18:24:11 2011 +0000 'Oops!' Overlooked something during the merging / conflict checking... commit a44c3776dfcbbfdbe89446bbbc0d621cf36ed9da Merge: 9a83f3e75 7c419607c Author: Alan Garny '' Date: Tue Mar 22 18:15:39 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: src/widget/organise/fileorganiserwidget.cpp commit 9a83f3e75784dd249a4f111aa1f63b85f4eb5519 Author: Alan Garny '' Date: Tue Mar 22 17:58:37 2011 +0000 Minor refactoring. commit 7b546540c6e0c2a848636fe8b2ece05444eb875c Author: Alan Garny '' Date: Tue Mar 22 16:59:50 2011 +0000 Specifically accept the dropping of URIs on the main window and on the file organiser widget. Improved the enabling/disabling of the New action in the file organiser window. Only accept the dropping of files '(i.e.' not folders and no symbolic links 'either)' on the file organiser widget. Check that a file being dropped on the file organiser widget is not already present in the folder item where we want to drop it. Check that the creation of a folder in the file organiser widget is only done within another folder '(i.e.' we 'can'\''t' create a folder ''\''in'\''' a 'file!).' commit 7c419607c779ce9fcfbda3208193bac0690cd60f Author: Alan Garny '' Date: Mon Mar 21 20:29:35 2011 +0000 ''\''Fixed'\''' an issue with QWebView taking over other widgets that are being scrolled. Basically, the problem was that if one was, on Mac OS X, scrolling '(using' the two-finger trackpad 'method)' the file browser widget, then either the CellML Model Repostory widget or the help widget would also scroll which is clearly not what we 'want!' commit 3663c0e0f68f6cbee506e57ac6fa682718828084 Author: Alan Garny '' Date: Mon Mar 21 20:00:30 2011 +0000 File organiser widget: made sure that we can always see the whole contents of the widget. commit 178b427ab90240e417c204272a940a314965939c Author: Alan Garny '' Date: Mon Mar 21 19:27:13 2011 +0000 File organiser window: reverted the automatic selection of a folder/file upon its creation/addition. Indeed, in the case of a folder, if we create several folders in a row, the first folder will be created where one would expect, but then any subsequent folder will be created in the first folder which is not what we want '(we' indeed want all the folders to be created in the same parent 'folder).' In the case of a file, it 'doesn'\''t' make any difference, so we are just being consistent here. commit 5d5ca557a8bf03b163109c50b82da79103740583 Author: Alan Garny '' Date: Mon Mar 21 19:06:33 2011 +0000 CellML Model Repository widget: used the same trick as for the help widget when it comes to the border that is to be drawn when the widget is on a docked window. commit 42ead9fe693b92b21d80b00896beb45b802a2834 Author: Alan Garny '' Date: Mon Mar 21 18:06:25 2011 +0000 Prevent the dropping of objects on the help and CellML Model Repository widgets. Indeed, they are based on QWebView which by default accept the dropping of objects. Also override dragMoveEvent which I 'hadn'\''t' realised needs overriding to get the dropping of objects to work. Added support for the dragging and dropping of objects on the file organiser widget. Fixed a minor issue with FileOrganiserWidget::newFolderName which 'wouldn'\''t' always use '"New' 'Folder",' even though the name is not used by another folder. commit adb7e0d4907ec1d347395b9513207beadd95c0a8 Author: Alan Garny '' Date: Mon Mar 21 16:48:45 2011 +0000 Cleaning up of code. commit 963a92fa18c4d7a41bad6b2c60488226fe7c98c3 Author: Alan Garny '' Date: Sun Mar 20 19:09:13 2011 +0000 File organiser window: implemented the loading of settings and it works fine with both folders and files, even though the latter can still not be added to the organiser as such. Also show the full path of a file using the tooltip whenever hovering over a file item. commit 5509ecdd9a13924bebe69fe84616b149ea8a4672 Author: Alan Garny '' Date: Sun Mar 20 16:41:33 2011 +0000 File browser/organiser widgets: re-allow a right mouse click to activate an item. commit ff6a27b3813d4a078c55029ca7eb1c39bc943d4f Author: Alan Garny '' Date: Sun Mar 20 12:50:22 2011 +0000 File organiser window: can now save the settings of the file organiser widget. '(Still' needs further testing though, not least because we 'don'\''t' yet have the loading of the settings implemented and files are not, through drag and drop, yet 'supported.)' commit 097834a19b6409aaf28b8433147f69fa46b144c0 Author: Alan Garny '' Date: Fri Mar 18 17:42:04 2011 +0000 Oops, forgot to remove something that I was using for testing purposes. commit 77b621cccbc010b0b2c4583ef9a517a4343c4105 Author: Alan Garny '' Date: Fri Mar 18 17:39:26 2011 +0000 File organiser window: added a context menu to the file organiser widget. commit 3e9fc3906d307374fef11e21947a8ea8bed09c98 Author: Alan Garny '' Date: Fri Mar 18 16:27:08 2011 +0000 Added a custom context menu in the file browser window. Very minor editing. commit b1a40f8949bae89be56c38aedd5d961bd0d0637e Author: Alan Garny '' Date: Fri Mar 18 15:52:43 2011 +0000 File organiser window: prevent the selection of an item using the right mouse button '(since' this should be used for a popup menu, if 'needed).' commit cf7c646c53db19e8345ed619240959417542ae6a Author: Alan Garny '' Date: Fri Mar 18 15:48:21 2011 +0000 File organiser window: make sure that the contents of the widget is always visible. commit ab1fb1405b2098403f43d5d70afc6312ed970175 Author: Alan Garny '' Date: Fri Mar 18 15:20:57 2011 +0000 File organiser window: only go into edit mode, upon adding a new folder item, only if no other folder item is already being edited '(otherwise' this generates an error message on the console -- on Linux at 'least).' commit ac86589dca254b9ec0e94b921593680c08b25b29 Author: Alan Garny '' Date: Fri Mar 18 15:09:51 2011 +0000 File organiser window: allow the editing of a newly added folder item. commit c13c5285e51cc6e236311e4344814d0a66578bf3 Author: Alan Garny '' Date: Fri Mar 18 14:54:52 2011 +0000 File browser window: can now delete selected items. commit f17a8f802b76298cb14593066f9e9dcbb61f309d Author: Alan Garny '' Date: Fri Mar 18 13:17:43 2011 +0000 File browser window: removed a couple of connections in the file browser widget which are not relevant anymore. commit d498f5b827cea5dca769f02594ad7c8fdbbc04e2 Author: Alan Garny '' Date: Fri Mar 18 12:45:10 2011 +0000 File organiser window: enable/disable the toolbar buttons depending on what is selected, if anything. commit 7f9f0977573c0d3fd0b6efe87220ad914ab81d03 Author: Alan Garny '' Date: Fri Mar 18 12:03:51 2011 +0000 Though some more work is definitely required, here is a first shot at allowing the creation of folders in the file organiser window. commit 7b394055991c30b9ff8b253cdfa5974bf3166f69 Author: Alan Garny '' Date: Fri Mar 18 11:58:35 2011 +0000 Some more minor editing. Slight improvement to the file browser widget. commit a61c382872ad27fc048567d42acdb65d141b6740 Author: Alan Garny '' Date: Fri Mar 18 11:56:56 2011 +0000 Added an icon for the preferences menu item. Some very minor editing. commit 5a13512485b46482cce7e706acef30a5f72fb4cf Author: Alan Garny '' Date: Thu Mar 17 16:54:45 2011 +0000 Slight update to the about box. commit df1d4a034d1a67e318f6617aae7e92e5a84f3d9a Author: Alan Garny '' Date: Thu Mar 17 15:51:49 2011 +0000 Forgot to add a header file to src/ui/organise/fileorganiserwindow.cpp in the last commit. commit d40099bdce174fd0912c1ea31dcf53d621c22829 Author: Alan Garny '' Date: Thu Mar 17 15:50:43 2011 +0000 Working some more on the file organiser window. commit 213e0d4727ec80740382eaaadad19bfcbb6396e2 Author: Alan Garny '' Date: Thu Mar 17 15:32:34 2011 +0000 Added a new menu item to allow the user to specify his/her preferences for OpenCOR. commit 9983d90de85ed8aa36e5a3c620af03abf7bd475d Author: Alan Garny '' Date: Thu Mar 17 12:08:08 2011 +0000 Hmm... ok, I 'wouldn'\''t' have thought that a '"\"' would have caused a problem in a .rc file, but I guess 'it'\''s' because we are doing things through 'CMake...?' commit d352cc6d6477f8ce137f0488c8dada913e8a42c3 Author: Alan Garny '' Date: Thu Mar 17 11:56:43 2011 +0000 Slight changes to our main CMakeLists.txt file and makeproj.bat file. commit cd47e5f465deaad213f2bb34dc3ce511a33f4f1b Author: Alan Garny '' Date: Thu Mar 17 11:41:44 2011 +0000 Slight oversight for Mac OS X '(following' the last 'commit).' commit 311b494a88d663166499a6230b97601eb7427bcf Author: Alan Garny '' Date: Thu Mar 17 11:36:25 2011 +0000 Minor update to the developer documentation. Also better organised the resources that we are using. commit 9aff6c02baa4689a39298aa692d21935b000391a Author: Alan Garny '' Date: Thu Mar 17 08:22:15 2011 +0000 Re-added the demo equation in our MmlViewerWidget, for demonstration purposes. commit 3457dc12ecda5fdadd3c4535a108339d7eb0d897 Author: Alan Garny '' Date: Thu Mar 17 08:14:43 2011 +0000 Minor update to the 'runproj[.bat/.vbs]' scripts. commit be4852d45a42904d50dec3648a93405e23630ae0 Author: Alan Garny '' Date: Wed Mar 16 14:52:49 2011 +0000 Minor update to the developer documentation. commit 6a31db368a057fa50f7e7f1168e3dad2a474bfd1 Merge: 50d3bda5e 2c5cfd7fd Author: Alan Garny '' Date: Wed Mar 16 14:38:48 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 50d3bda5e03b7638ebc2815d7831e36e888b730a Author: Alan Garny '' Date: Wed Mar 16 14:37:35 2011 +0000 Updated the developer documentation following the addition of a ''\''proper'\''' debug build process. commit 754adf7d56b8f206697cff72802685f9bc91f061 Author: Alan Garny '' Date: Wed Mar 16 13:51:23 2011 +0000 Improved the debug build process. commit 8f245e82ebd23fe77b570770a3e7d5dd698e4fd5 Author: Alan Garny '' Date: Wed Mar 16 11:24:14 2011 +0000 Trying a possible approach to debugging on Windows '(since' this is not ''\''straightforward'\''' when using 'CMake).' This will most likely be replaced with another solution though... commit 7315fce3b3dc12a83fae95f1cc0026e3587d4a36 Author: Alan Garny '' Date: Wed Mar 16 09:21:57 2011 +0000 File organiser window: removed the horizontal spacer between the New and Delete buttons in the toolbar. Though ''\''nice'\'',' I am not sure 'it'\''s' good UI practice. commit 2c5cfd7fdc5d094db98da7cb0bb7d29406f1248c Author: Alan Garny '' Date: Tue Mar 15 19:03:25 2011 +0000 Set some properties for the file organiser widget, and remove the focus border which is shown on Mac OS X but messes up our toolbar '(i.e.' same story as for our file browser 'widget).' commit 1c97334526220d62e67a26f7460defb5f673c004 Author: Alan Garny '' Date: Tue Mar 15 17:32:11 2011 +0000 Minor improvements to original status tips and their translation. Started work on the file organiser window. commit 55c8c1b723cac720adf4dd4dc14c03332c25f800 Author: Alan Garny '' Date: Tue Mar 15 16:55:26 2011 +0000 Some cleaning up of code. commit 28021ed544db086493387a615a2d241e5300d1cd Author: Alan Garny '' Date: Tue Mar 15 16:24:29 2011 +0000 File browser window: improved the go to previous/next folder/file feature. commit 2aabf157b0236f4c99ccaaf0bb297ea38855c3de Author: Alan Garny '' Date: Tue Mar 15 14:45:11 2011 +0000 Some more cleaning up '(following' the reworking of the file browser 'window).' Also, going to the previous/next item '(in' the file browser 'window)' should now work '(still' need some more testing 'though!).' commit fb4d1d4b90832bab8acb574f672770ff951212a1 Author: Alan Garny '' Date: Tue Mar 15 12:07:35 2011 +0000 File browser window: some more cleaning up and improvement to the previous/next folder/file feature. commit 09c6b3032589ec136c1a58392b44dd06b29e95e4 Author: Alan Garny '' Date: Tue Mar 15 10:59:56 2011 +0000 File browser window: simplified the code, not least because we 'don'\''t' have the New and Delete features anymore. commit d5e62a1ca8cfadd26d97a7a5a029ff456bd8a5d0 Author: Alan Garny '' Date: Tue Mar 15 09:25:42 2011 +0000 Minor updates to the developer documentation. commit 57eb7bc213d76ee18bf4fdbcdf5e2969d042ffb3 Author: Alan Garny '' Date: Mon Mar 14 17:37:25 2011 +0000 Fixed a stupid problem with CommonWidget '(which' was setting the name of its parent rather than 'itself!).' commit 14399ad9285d7ca9af0b3deb4aea40d743b65b04 Author: Alan Garny '' Date: Mon Mar 14 17:24:49 2011 +0000 Some further improvements with regards to CommonWidget. commit c16999f85ac56121b811b9ef83c79c5b14a88bd2 Author: Alan Garny '' Date: Mon Mar 14 17:03:26 2011 +0000 Improved our reliance on our CommonWidget class '(which' support the loading/saving of settings, retranslation, 'etc.).' Improved our implementation of loading/saving settings. commit 7a265f86d637d56e9cd44d81b6bc05dfe6270927 Author: Alan Garny '' Date: Mon Mar 14 14:34:58 2011 +0000 File browser window: simplified it by removing the New and Delete actions. Indeed, QTreeView '(when' used with 'QFileSystemModel)' 'doesn'\''t' refresh as nicely as one would hope/expect '(e.g.' adding a new folder will result in that new folder being ''\''listed'\''' even if it should be first because of its 'name).' It might be possible to get things to work as hoped/expected, but it might take too much time and there are plenty of other things to do, so... Well, 'it'\''s' probably better that way anyway... '(I.e.' things are left nice and 'simple.)' commit 11410c9e5b1b746ac37f49d8ff49f0d049a717bb Author: Alan Garny '' Date: Sun Mar 13 19:28:28 2011 +0000 File browser window: updated the code for going to the parent directory. commit ecf0ec452e6e14e09a4120d7282312409d1ef64f Author: Alan Garny '' Date: Sun Mar 13 18:22:46 2011 +0000 Slight updates to the doc/developBuildTestAndPackage.html file. commit c4c8a17f7e9ef88df6779a4fa1be899984c21a96 Author: Alan Garny '' Date: Sun Mar 13 12:07:04 2011 +0000 File browser window: made symbolic links visible, since they are common on Linux / Mac OS X. commit 54f0d797b62ddf8a922c7c7effc6f88a793bbca7 Author: Alan Garny '' Date: Sat Mar 12 23:46:58 2011 +0000 Argh, another overlook for Mac OS 'X!' '(Also' 'changed/reset(?)' the permissions on 'distrib/application.sh.linux.in)' commit aea9e073d72cf7a86acbe083e0f2673b4f46620a Author: Alan Garny '' Date: Sat Mar 12 23:39:44 2011 +0000 Slightly improved the deployment on Linux and Mac OS X. commit 898a776d218f622744efb9943cc58960af0f5fb4 Author: Alan Garny '' Date: Sat Mar 12 23:37:24 2011 +0000 Fixed a small oversight regarding the Mac OS X deployment. commit c8ce54e53f270bf96df7eb446c83e0eba0f8ca8a Author: Alan Garny '' Date: Sat Mar 12 23:28:13 2011 +0000 Fixed a small mistake regarding the Windows deployment. commit 6b7fce7997233a501f99409c5b91f4c3694cb825 Author: Alan Garny '' Date: Sat Mar 12 23:22:56 2011 +0000 Improved a few things when it comes to deployment. commit ae1b63f23f82dda671b308898692365923de3e69 Author: Alan Garny '' Date: Sat Mar 12 19:30:09 2011 +0000 Reworked some code '(with' regards to the creation of a new CellML file from within the file browser 'window)' to take advantage of the signal/slot approach. commit 4678d2e7f857813a8cf28d4ac3abc5c7b89e9f0d Author: Alan Garny '' Date: Sat Mar 12 19:10:30 2011 +0000 Slight improvements to the file browser window. commit b3ddf810e3f49e4c84186f286fe7032ac19d9a9b Author: Alan Garny '' Date: Sat Mar 12 18:31:44 2011 +0000 Improved the tracking of folders navigation in the file browser window. commit bd587503b02eb6cd824a4f88b22485a336164ed8 Author: Alan Garny '' Date: Sat Mar 12 15:44:49 2011 +0000 Slight improvements to bringing OpenCOR to the foreground '(as' a result of running a second instance of 'OpenCOR).' commit 7c4ad9c1a6797fea93e0a6884f860c2a14881c26 Author: Alan Garny '' Date: Fri Mar 11 18:52:36 2011 +0000 Fix to a small issue in the document manager '(a' dropped file would be recorded its url rather than its system-specific format file 'name).' commit 53b5a2747cf466c6dda7895d9bcc80bdcc2ab142 Author: Alan Garny '' Date: Fri Mar 11 18:29:49 2011 +0000 Minor fix to the creation of a CellML file '(not' quite the right information was being displayed when trying to create a CellML file that already 'existed).' commit 955a454e0b9f26945811e0cdfc0cfcf4193d6dba Author: Alan Garny '' Date: Fri Mar 11 18:22:28 2011 +0000 Can now create a new CellML 1.0/1 file from the file browser window, and have it managed by OpenCOR. commit a783e0597dcaaeb7c0d125a49bfb84fa1cb3ef3a Author: Alan Garny '' Date: Fri Mar 11 17:50:28 2011 +0000 Replaced '#define' statements by static const '(i.e.' slightly 'better).' Added a document manager to the main window. commit a1d95eecb1a4346dd5ed867e65d6c879aae5a2ab Author: Alan Garny '' Date: Fri Mar 11 17:47:55 2011 +0000 Minor corrections to the best practices document. commit 847e1b93eb3e555027ba4e713958fe3f44005990 Author: Alan Garny '' Date: Fri Mar 11 14:48:16 2011 +0000 Cosmetic update to the best practices '(developer)' document. Implemented a basic document manager which is a prerequisite to handling documents in OpenCOR. commit 5a7c78e93578c43dc318700d001223211519ef34 Author: Alan Garny '' Date: Fri Mar 11 13:46:40 2011 +0000 Created the skeleton of a document manager which will be used to keep track of the various documents opened in OpenCOR. commit f9b7e4a531963895ef6e068de39f1d76cda7778c Author: Alan Garny '' Date: Fri Mar 11 13:01:30 2011 +0000 Starting work on adding a new CellML 1.0/1 file from the file browser window. commit 5e73788cac8759eb5c75b7150548162256883d02 Author: Alan Garny '' Date: Fri Mar 11 12:08:10 2011 +0000 Use our own Info.plist file '(Mac' OS X 'specific),' since it allows to associate .cellml files to OpenCOR. commit 4bc4198450810e663d20d13f16684393e5c1aaed Author: Alan Garny '' Date: Thu Mar 10 19:29:39 2011 +0000 Simplified the main CMakeLists.txt file. commit c5f8c1b9ba4cdba24eb56124d0c1b8656e7f987c Author: Alan Garny '' Date: Thu Mar 10 19:05:33 2011 +0000 Who would have thought that a ''\''wrong'\''' choice of parameter name in the main CMakeLists.txt file could have resulted in such a spurious 'error?!' commit 2413ba9c77ad0ed2c14385df60cd3d442b14d6a1 Author: Alan Garny '' Date: Thu Mar 10 18:42:03 2011 +0000 Replaced tabs with spaces. commit 29d4c35d95826ca4085a9f08954389ee551aeb59 Author: Alan Garny '' Date: Thu Mar 10 16:01:07 2011 +0000 Slightly improved the Mac OS X build. commit baa56f8ac5b125acb133a0875aac5fb546dee729 Author: Alan Garny '' Date: Thu Mar 10 15:21:24 2011 +0000 Some minor improvements to the main CMakeLists.txt file in general and for Mac OS X in particular. commit 078ed03a872fe0c2a31a4bbbbe5f32375b667a58 Author: Alan Garny '' Date: Thu Mar 10 12:47:34 2011 +0000 Oops, I had modified packageproj.bat to make my tests faster '(for' the last 'commit)' and forgot to revert 'it!' commit e26e2abeee7a3ee31790c79553127cddb2c7a67a Author: Alan Garny '' Date: Thu Mar 10 12:45:43 2011 +0000 Added file type association for the Windows installer '(i.e.' .cellml files are now associated to 'OpenCOR).' commit 59c535e2d630689dd4974b1c5f31c7537d353601 Author: Alan Garny '' Date: Wed Mar 9 19:05:39 2011 +0000 Fixed a small issue with the utils functions. Also updated the main CMakeLists.txt file to account for the two CellML files that were added in the last commit. commit 4ca4051d7421bc8898c188bd71173453816e4ae8 Author: Alan Garny '' Date: Wed Mar 9 18:09:54 2011 +0000 Added two CellML files '(the' original Hodgkin-Huxley model and the van der Pol 'model)' which will act as some kind of examples for OpenCOR. commit bcfa85333155fab1b183eae50551e75e35d27a82 Author: Alan Garny '' Date: Wed Mar 9 16:40:36 2011 +0000 Stupidly big commit. Update the best practices '(developer)' document, as a result of some reworking of event-related code. Reworked some of the utils functions, and added a new one '(removePath).' Did some cleaning up. Added a tooltip for when hovering an entry in the file browser window '(the' idea being to show the full path for that 'entry).' Fixed a small problem of initialisation '(of' the previous 'folder)' in the file browser window. Can now delete a file/folder in the file browser window '(recursively' in the case of a 'folder).' commit c70338e5b6fd8f829a70a5b046ec9709edfe1e0b Author: Alan Garny '' Date: Wed Mar 9 09:46:33 2011 +0000 Improved the creation of a folder, in the file browser window, by adding a regular expression to validate a folder name. commit 9b5bb3640f1a356c02112d2c89d12c523f03b1ff Author: Alan Garny '' Date: Tue Mar 8 19:07:38 2011 +0000 Can now create a new folder from within the file browser window. commit 9b19ac53e1f6712d87b146692652dfbde8fafec5 Author: Alan Garny '' Date: Tue Mar 8 13:55:18 2011 +0000 Getting there with the previous 'commit!' commit 9051ca549f54ab0696ad959edec083cd799a7131 Author: Alan Garny '' Date: Tue Mar 8 13:53:56 2011 +0000 Reverted part of the previous commit since we still need to decide on the license for OpenCOR. commit 0c953aff7907916ad51928382004554bbc8dc8c4 Author: Alan Garny '' Date: Tue Mar 8 13:45:30 2011 +0000 Slight update to the third party libraries information. commit c71a2c264956839cbb15ba0932a518489d5b40a7 Author: Alan Garny '' Date: Tue Mar 8 12:57:01 2011 +0000 Updated the developer documentation by adding some information about parallel compilation. commit 4660326d5c1e03a95870bf0e68ce2d7846c740b0 Author: Alan Garny '' Date: Tue Mar 8 11:17:30 2011 +0000 Dealt with the default behaviour of the New button in the file browser window. commit 6b2b52bbd9a6cdbe7129d94402b06de7e1374746 Author: Alan Garny '' Date: Tue Mar 8 09:15:53 2011 +0000 A bit of refactoring and started resuming work on the file browser. commit 97fcf3c591778c738ee814637c88d9db26e7b75a Author: Alan Garny '' Date: Mon Mar 7 17:47:05 2011 +0000 Updated the developer documentation '(regarding' installing Qt Creator on 'Ubuntu).' commit 7ec79e20810c93e5d12a5c610e59d75e0a4efbb5 Author: Alan Garny '' Date: Mon Mar 7 16:26:26 2011 +0000 Set the first version of OpenCOR to 0.1.0 '(rather' than '0.1.1).' commit 647f58f0f99a622f67e3d15d092ae1e352a4d845 Author: Alan Garny '' Date: Mon Mar 7 16:24:10 2011 +0000 Slight update to the developer documentation. Also slightly updated the style sheets for the documentation. commit 56cd2395a1a3fef1282a0c443b7dae343898b3b6 Author: Alan Garny '' Date: Sun Mar 6 19:28:49 2011 +0000 Updated the developer documentation to give more detailed instructions on how to get a Qt 4.7.2 and Qt Creator 2.1.0 environment on all three platforms, this using individual components '(rather' than the overblown Qt SDK 1.1 Beta which is causing problems -- 'it'\''s' a beta after 'all!).' commit 6f41c4311bad297f0ec602ba9fbc41d165bb1579 Author: Alan Garny '' Date: Sat Mar 5 18:22:27 2011 +0000 Minor updates to the developer documentation. commit cd1292a6613d7e0e6ddaa68c38f7fc085c88e24b Author: Alan Garny '' Date: Fri Mar 4 19:26:14 2011 +0000 Allow to specify the number of processors for the build/packaging. commit a8d82a8981ab4655899919b8023e4f2a27d43bde Author: Alan Garny '' Date: Fri Mar 4 14:15:35 2011 +0000 Minor update to the developer documentation. commit 02210bbc4db31387bfb77fa901fd78507afad19d Author: Alan Garny '' Date: Fri Mar 4 13:25:23 2011 +0000 Started work on the New button in the file browser window. commit 9b1b4473c9e1173b8c08e4cf6a17154bcd58e7b1 Author: Alan Garny '' Date: Fri Mar 4 11:40:19 2011 +0000 Slight update to the developer documentation. commit 889f78056ae04518b086f85196fd89128d18c3c4 Author: Alan Garny '' Date: Fri Mar 4 10:13:52 2011 +0000 Updated the developer documentation following the release of an updated version of Qt Creator and Qt itself. commit c590d218ee4c77b98d5409c5bb2d1982383c0284 Author: Alan Garny '' Date: Thu Mar 3 19:32:52 2011 +0000 Minor GUI improvement to the loadSettings of the file browser window. commit 27ee984041b8451ac1216898c8752fdebb4f3b71 Author: Alan Garny '' Date: Thu Mar 3 19:18:28 2011 +0000 Minor improvement/fix to the file browser window. commit b439a32d2d047387f46e03f572c89ef0697d4a7a Author: Alan Garny '' Date: Thu Mar 3 19:09:59 2011 +0000 Implemented the parent folder button in the file browser window. commit 334a9aead93a2ea6d5afda61f8b56ccb11c39f28 Author: Alan Garny '' Date: Thu Mar 3 17:40:22 2011 +0000 Implemented the previous folder and next folder actions. commit 2e7a6018c95f59ff959674ceae654dd7c316f751 Author: Alan Garny '' Date: Thu Mar 3 15:44:34 2011 +0000 Started work on implementing the other buttons in the file browser window. commit bd3505fb8e77f74c8cc8856798b9fc1872a2cd3e Author: Alan Garny '' Date: Wed Mar 2 18:16:36 2011 +0000 Improved the CMakeLists.txt files for the 3rd-party libraries we use. commit 51fe97adf8f4eaa50dcc05b941bda8a7c1111e9b Author: Alan Garny '' Date: Wed Mar 2 17:00:44 2011 +0000 Improved the main CMakeLists.txt file. commit 92226123bb28a2b62db22b4f0fb4fee9bbb814a6 Author: Alan Garny '' Date: Wed Mar 2 09:58:13 2011 +0000 Slight update to the developer documentation as a result of a new version of Qt Creator. commit 73b9f60256c23be5d2c3baa5e1e273a11a6c2776 Author: Alan Garny '' Date: Sun Feb 27 18:50:11 2011 +0000 Some cleaning up of code. commit 3b16c3788f6e3ebd6ea49c48f53a886c6eb06bbd Author: Alan Garny '' Date: Sun Feb 27 18:39:37 2011 +0000 Hmm... Ok, I started doing some inlining and 'it'\''s' quite insane. I really 'don'\''t' like some code to be in header files, so not going ahead with inlining and really leaving it to the compiler to do a good job at optimising things. commit df886992401fa7af740389672269efe961f71403 Author: Alan Garny '' Date: Sun Feb 27 17:16:17 2011 +0000 Modified, in the developer documentation, the best practice rule regarding inline functions. commit 9617608134a11152060c6b44a594b9d8379b9c22 Author: Alan Garny '' Date: Sat Feb 26 02:10:47 2011 +0000 Addressed a small issue with the help widget. commit c939a8a23c2d4865b7185ddb625d7082c93f4b79 Author: Alan Garny '' Date: Sat Feb 26 01:51:43 2011 +0000 Slight improvements to the style sheets for the documentation. commit 4f41de55568f01792ca9006accb0965430b88ac8 Author: Alan Garny '' Date: Sat Feb 26 01:36:35 2011 +0000 Moved a couple of files. Updated the developer documentation. commit 03bbcf4ac04b7e2beb2efed267620c494bbeeb5d Author: Alan Garny '' Date: Sat Feb 26 00:59:44 2011 +0000 Improved the style sheets for the documentation. Also fixed a small style sheet problem in the user documentation. commit 019b8a0c871265d460b8fb184ed39b03f84f29c9 Author: Alan Garny '' Date: Fri Feb 25 23:08:21 2011 +0000 Re-added the setUnifiedTitleAndToolBarOnMac code, but commented it out, since there is a known bug that prevents the loading/restoring of the application geometry from working properly '(see' 'http://bugreports.qt.nokia.com/browse/QTBUG-3116).' commit 5404be8e16c1d5010e5f3161d8caf0ace9aafd4e Author: Alan Garny '' Date: Fri Feb 25 22:50:10 2011 +0000 Slight update to the developer documentation. commit 4ff6dee6eba7a5f235c98f5e3ff4d55d9c78dddf Author: Alan Garny '' Date: Fri Feb 25 19:02:41 2011 +0000 Prevent right clicking with the mouse from selecting the row beneath the mouse in the file browser widget '(useful' if we want to display a context menu which we happen to 'want!).' commit cc15c8f0413d2e6ecac29827bbb25f77526244cb Author: Alan Garny '' Date: Fri Feb 25 18:19:27 2011 +0000 Slight improvements to the code for the context menus in the file browser and help windows. commit ac7cc31e912cdf54e6d5d7fc9a6fd7b7d69601d7 Author: Alan Garny '' Date: Fri Feb 25 17:30:14 2011 +0000 A bit of refactoring '(to' make the update of the enabled state of actions 'easier).' Some cleaning up. Got the home button on the file browser window fully functional. commit c2f8baa9c29a05c0b87444185e3e490c167fa3a5 Author: Alan Garny '' Date: Fri Feb 25 15:27:09 2011 +0000 Following our best practices and ''\''improved'\''' our drag '&' drop settings. commit f8e455026e2bdb5dc1c01e90c756c7851e6c58c7 Author: Alan Garny '' Date: Fri Feb 25 11:53:13 2011 +0000 Added a custom context menu to the file browser window. commit d6f9ee4f967951e05bd5c04212915815ff5903fa Author: Alan Garny '' Date: Fri Feb 25 10:53:56 2011 +0000 Renamed PMR Explorer to CellML Model Repository. commit 4e2e298bfd4cc1b70373cd56b644b0d247f3abb8 Author: Alan Garny '' Date: Fri Feb 25 10:29:47 2011 +0000 Made the PMR Explorer widget inherit from QWebView, and load the CellML Model Repository page for now. commit 0ff2aecf391fb933127188797f949ed58011e53b Author: Alan Garny '' Date: Fri Feb 25 10:14:09 2011 +0000 Some cleaning up. commit c462c80fdec7103154a2a3c14ddf0bfbe7d6b4bc Author: Alan Garny '' Date: Thu Feb 24 21:02:16 2011 +0000 Added a few menu items to the Help menu. commit c8b10af81a3eb084af3af572120cb34ac92c70da Author: Alan Garny '' Date: Thu Feb 24 20:05:39 2011 +0000 Sub-classed QDockWidget so that we can style its title bar for Mac OS X '(by' removing the padding for the float and close buttons since it makes the title bar of a docked '(not' 'floating)' window insanely 'big).' commit 844d9a6f8032ddf094e5bdb8bf851a9cead14d00 Author: Alan Garny '' Date: Thu Feb 24 19:21:20 2011 +0000 Being pedantic. commit 90147fd82b2ef3b34c58dd9378a03078d9a480d9 Author: Alan Garny '' Date: Thu Feb 24 19:03:34 2011 +0000 Removed some obsolete French translations '(had' forgotten to do that in the last 'commit).' Also hard-coded '(!!)' the size of the toolbar icons '(they' are really big on Mac OS 'X!).' Finally, removed the focus border that is drawn on the file browser widget on Mac OS X '(it' used to mess up our 'toolbar!).' commit d860677c8ce5f8d75a26e5bd897909d3e558ffa0 Author: Alan Garny '' Date: Thu Feb 24 18:40:51 2011 +0000 Here goes for a cleaner solution to the toolbar ''\''issue'\''.' Implemented in both the file browser and help windows. commit e809477f418f431449494ac00c9d4a145c342eae Author: Alan Garny '' Date: Thu Feb 24 17:47:42 2011 +0000 Just realised '(doh!)' that for the dock windows that need a toolbar '(the' file browser and help windows at this 'stage),' we can programmatically add a QToolBar object to the window. I guess I got misled by the fact that the UI editor in Qt Creator 'doesn'\''t' allow one to do everything. In fact, it might even possible to add this directly in a .ui file. Whatever the case, the stylesheet file is not required anymore which is a very good thing '(since' it ''\''forced'\''' to have a common 'look&feel' for QToolButton on all three platforms which was really not 'great).' commit fcdb90e1be21540073926d519c5ef566648ac544 Author: Alan Garny '' Date: Thu Feb 24 16:50:57 2011 +0000 Added a drop-down menu to the New button in the file browser window. Need to improve the style sheet for QToolButton though since it 'doesn'\''t' currently handle drop-down menus. commit 113eaf53797ba67fb4abb2916580bf9bda9eb290 Author: Alan Garny '' Date: Thu Feb 24 15:38:24 2011 +0000 Added a delete button to the file browser window. commit 2a278a767fd861a7270c574409ef6a9a0ff7f185 Author: Alan Garny '' Date: Thu Feb 24 14:04:18 2011 +0000 A bit of cleaning up of the CSS files. Added Google Code Prettify so that demo codes can be syntax highlighted. '(This' is currently only relevant for the developement documentation, but will to be for the user documentation when we give snippets of COR-like 'codes).' commit 289f7852b16f7d2a14413c17efe79fdd8ae52a3c Author: Alan Garny '' Date: Wed Feb 23 20:08:28 2011 +0000 Corrected a French translation with a wrong HTML tag. commit 1f2e85b88eee13ef91807c480aa92c0f26105828 Author: Alan Garny '' Date: Wed Feb 23 20:00:01 2011 +0000 Some cleaning up in the file browser windows. Renamed a few things and updated some French translations. commit c835e674a968d4628a1b341bd08dd28b74e16bc8 Author: Alan Garny '' Date: Wed Feb 23 19:50:48 2011 +0000 Confirmed that the file browser also works on Mac OS X. commit 85c5bd5674b8f870e6ef21f6e2948e1ed4d3378f Author: Alan Garny '' Date: Wed Feb 23 18:20:37 2011 +0000 Added a '"New"' button to the file browser window. Still nothing functional in there though. commit dbcdf5fe28f8c3e0f4fa2b2dbdef6d01d927af51 Author: Alan Garny '' Date: Wed Feb 23 17:43:54 2011 +0000 Improved the CSS file. commit f7e33853283bd28512935cf740050e03f02e3832 Author: Alan Garny '' Date: Wed Feb 23 16:48:23 2011 +0000 Added some ''\''proper'\''' separators in the secondary toolbars. commit b4f98d7b3a7491f09d54543c04cc1f054278d0e0 Author: Alan Garny '' Date: Wed Feb 23 15:08:32 2011 +0000 The columns of the file browser can now be resized '(and' properly initialised the first time 'round).' commit b0fa3747c7adcf32d8005f5c42da7fad36b85276 Author: Alan Garny '' Date: Wed Feb 23 14:37:36 2011 +0000 Our recent file browser work was perfect for Windows, but on Linux there were still some events that needed processing, so we now do that and it all works fine now. commit 9d48b93dc987faf2fa9d4e30f785645336b191c7 Author: Alan Garny '' Date: Wed Feb 23 14:02:10 2011 +0000 Slightly revised the default layout. commit b82eff61463c6fcb2abc5f7308a1459570eecd3a Author: Alan Garny '' Date: Wed Feb 23 13:57:08 2011 +0000 Finally got the file browser to properly retrieve the folder/file that was last selected. The ''\''trick'\''' consisted of handling the QFileSystemModel::directoryLoaded signal commit 351f47122c292b00ae206dd4fb409e7f14835adb Author: Alan Garny '' Date: Tue Feb 22 13:57:26 2011 +0000 Some simple cleaning up of code. commit 770a666a4f6675439bf9b262afdcf770f9266ca5 Author: Alan Garny '' Date: Tue Feb 22 12:27:19 2011 +0000 Refactored the overall code so that we 'don'\''t' make use of 'defaultSettings()' anymore. Instead, things get either moved to the constructor or 'loadSettings().' commit 9c44b9f5fb9ce31b127d91af865d3d0012a825ec Author: Alan Garny '' Date: Mon Feb 21 18:08:21 2011 +0000 Updated the Known Issues/Limitations user documentation with a known problem not with OpenCOR but with Windows. commit cf4d36d8e68d88816458d069e72dfe8e7b89950b Author: Alan Garny '' Date: Sun Feb 20 11:52:53 2011 +0000 Changed a comment. commit 85a9a26d8d745c15ec7b45c07ef5592adda66f1d Author: Alan Garny '' Date: Sun Feb 20 11:39:45 2011 +0000 Some cleaning up of code. commit 128d7544305fb14979d516904df72442a8e70b91 Author: Alan Garny '' Date: Sat Feb 19 02:37:34 2011 +0000 Slightly reformatted OpenCOR.css. Also, tweaked FileBrowserWindow a bit for Mac OS X. commit d108947381e7286a1274d660bf4906d72383a4f1 Author: Alan Garny '' Date: Sat Feb 19 02:04:36 2011 +0000 Added a toolbar for FileBrowserWindow '(none' of the buttons is active 'though).' Moved the style sheet for QToolButton '(originally' in 'helpwindow.ui)' to a resource file '(OpenCOR.css)' which is then applied upon starting OpenCOR. Updated the GUI for HelpWindow. commit a75287d0cba56db0227bc89693218f24b67cbc36 Author: Alan Garny '' Date: Fri Feb 18 19:12:31 2011 +0000 Since we 'haven'\''t' managed to get scrollTo to work as expected, we need to call setExpanded. commit ecf5339f052341809059afad01072c7c386c6bc8 Author: Alan Garny '' Date: Fri Feb 18 18:28:56 2011 +0000 Added some comments on my failed attempts at trying to get the file browser to behave in the way I would like. commit f903c527e0e6da4074b751296ad691b9be49593c Author: Alan Garny '' Date: Fri Feb 18 15:40:43 2011 +0000 Keep track / retrieve, from one session to another, the directory/file that was selected in the file browser. commit d0f89ac8ecc73a17ec5847249a77a0d48fcd56ed Author: Alan Garny '' Date: Fri Feb 18 11:53:54 2011 +0000 Best practices compliance. commit b27032689fbe9b9f89193fcd8c2da33dbef9e109 Author: Alan Garny '' Date: Fri Feb 18 11:52:57 2011 +0000 Have the file browser start in the 'user'\''s' home directory. Also have its columns resizing automatically based on their contents '(not' sure this is really what is best 'though!).' commit 5ce9f499f9d04be10c9aff176f0dd63f3ad5f61b Author: Alan Garny '' Date: Fri Feb 18 10:50:29 2011 +0000 We 'don'\''t' need a border for the file browser widget '(since' it inherits from QTreeView which does a good job of its 'own).' commit ae7fc5c87c1550744c25228e17e69e8f2db591dd Author: Alan Garny '' Date: Fri Feb 18 10:46:17 2011 +0000 Added a new best practices rule '(about' always explicitly accepting/ignoring 'events),' and made sure 'it'\''s' followed. Did a bit of minor refactoring while at it. commit 72fb198210df71ac028c11b3e704421d6e9fce7c Author: Alan Garny '' Date: Thu Feb 17 16:38:52 2011 +0000 To have 'mFileSystemModel->setRootPath(QDir::rootPath());' will, on Windows, set the root path to 'C:\' and thus prevent us from sorting things properly, so clearly not what we 'want!' So, back to 'mFileSystemModel->setRootPath("");!' commit c3bcf914eb3d6cce50c99f9eb7ba44b974509bf4 Author: Alan Garny '' Date: Thu Feb 17 16:26:35 2011 +0000 Minor cleaning up. commit 4749d98bf9e7826d76252441efecfd62f36926a4 Author: Alan Garny '' Date: Thu Feb 17 16:07:39 2011 +0000 Removed the sample MathML equation, since we know the MmlViewerWidget class works fine. commit 5996df20f56b7917ded3dff7f97822a6f6cf869d Author: Alan Garny '' Date: Thu Feb 17 15:38:57 2011 +0000 Started work on the file browser widget. Can now display the full structure and specify the sorting informaiton '(which' is tracked/retrieved as 'necessary).' commit 483b106c4eaf075a22520a461d37d74b0ab3f2a4 Author: Alan Garny '' Date: Thu Feb 17 14:47:14 2011 +0000 Wherever possible, use qobject_cast instead of dynamic_cast. commit 5e2a61882d1eeb8e74cec2656f1a839a52899157 Author: Alan Garny '' Date: Thu Feb 17 14:40:51 2011 +0000 Reinforced a use of qobject_cast. commit 6ae4813c74eb7cd8ee7578552ac665b77df8ca03 Author: Alan Garny '' Date: Thu Feb 17 14:39:30 2011 +0000 Some minor changes to respect our best practices rules. commit 15d5d8065a7a8dc8ca63d85f4d111ed4731a2fb6 Author: Alan Garny '' Date: Thu Feb 17 12:43:16 2011 +0000 Improved a piece of code. Have the file browser and file organiser widgets tabified. commit 18e7ccf0286dc7347fa0ac765fa224b3d99b33d3 Author: Alan Garny '' Date: Thu Feb 17 10:52:52 2011 +0000 Slight update to some user messages '(incl.' their French 'translation).' commit 52db2253719f539fa63a1e4b424ca42211541395 Author: Alan Garny '' Date: Thu Feb 17 10:39:36 2011 +0000 Slight update to the developer-specific documentation. commit cc068f31e5ba99b4e79376752130ef37732d11f0 Author: Alan Garny '' Date: Thu Feb 17 10:29:41 2011 +0000 Minor updates to the documentation. commit ae423109730f9b31a698d311d16c769ea68d58e0 Author: Alan Garny '' Date: Wed Feb 16 21:31:32 2011 +0000 Improved the drawing of the border of a widget when on a window that is docked. This stems from the fact that the help widget '(and' probably other future 'widgets)' would benefit from a top border on Mac OS X, and this at all times. Also added a new best practices rule about having the code fit within 80 columns whenever possible, and updated the code accordingly. commit af803ce9b25799dd11562bc8793b02ec6922d7ec Author: Alan Garny '' Date: Wed Feb 16 18:56:22 2011 +0000 Improved the cleanproj.bat file. commit d464ff02329fc0f4a053d2e015f4f87ce4d82547 Author: Alan Garny '' Date: Wed Feb 16 18:42:05 2011 +0000 Added a comment explaining the strategy used in the last commit. commit fd9c8148d125e323f76f86b86e65a26ff5ee8d69 Author: Alan Garny '' Date: Wed Feb 16 18:36:34 2011 +0000 Allow for the MmlWidget class to resize itself automatically and optimally. commit be9031f9f3a55d49bbb4da452094e6d8996b1ded Author: Alan Garny '' Date: Wed Feb 16 17:59:48 2011 +0000 Allow a CommonWidget object to have its border drawn if its parent is a QDockWidget object which happens to be docked. Indeed, should a QDockWidget object be docked, then no border will drawn '(and' 'can'\''t' be drawn 'effectively)' on Windows and Linux '(there' is one on Mac OS 'X),' so the idea is to have the children of a QDockWidget object to have their border drawn if their parent is docked. commit 4da7d10527bbf0d073739c87722e1014c9ba492b Author: Alan Garny '' Date: Wed Feb 16 15:58:31 2011 +0000 Some cleaning up. commit 11a20604ac9648a20194756eb2c28e0572664d4d Author: Alan Garny '' Date: Wed Feb 16 15:00:56 2011 +0000 Slight update to a comment. commit 23a94dcc5e18376b84ea937f899cde73053dce85 Author: Alan Garny '' Date: Wed Feb 16 14:58:16 2011 +0000 Fixed and improved a few initialisation issues with some menu items. commit 01909a28457cc9bc9d59241b6785e2517fe51140 Author: Alan Garny '' Date: Wed Feb 16 14:07:11 2011 +0000 Renamed the command viewer window and widget. commit 2e49ae3227208df38ca1b2973037e74778ea2409 Author: Alan Garny '' Date: Wed Feb 16 13:20:18 2011 +0000 Use toLatin1 rather than toAscii '(toAscii' is the same as toLatin1, but only if no codec has been specified, which is the case by default, but you never know, so better be safe than 'sorry!).' commit 08284560461faa6c4797499ec435b571dd629b7e Author: Alan Garny '' Date: Tue Feb 15 19:58:01 2011 +0000 Some cleaning up. Made the command viewer widget to inherit from QtMmlWidget, and added a sample equation to see that it is indeed working fine. commit 344163f2050cae7b31758633b8bcddfbf860e8df Author: Alan Garny '' Date: Tue Feb 15 18:44:30 2011 +0000 Respecting our best practices rules. commit 1ec2cb137751348f974f3a6d94852a956d4c29ef Author: Alan Garny '' Date: Tue Feb 15 18:37:38 2011 +0000 Change the default location of the different docking areas. commit 18b31f580b5bec346c12f149ccdef3ae12b6cd10 Author: Alan Garny '' Date: Tue Feb 15 18:23:14 2011 +0000 Added a command viewer window and widget. commit 57d7d95943cfac380ec52e5aad7cb734ffde0f62 Author: Alan Garny '' Date: Tue Feb 15 16:53:04 2011 +0000 Added a defaultSize method for the widgets. commit 22293a5d99b579e404cda19dacba734991f79d8f Author: Alan Garny '' Date: Tue Feb 15 15:39:43 2011 +0000 Added loadSettings and saveSettings to the CommonWidget class, and updated the rest of the code accordingly. commit abe562e8c131dae799620a96f4209ca273b49d08 Author: Alan Garny '' Date: Tue Feb 15 13:33:32 2011 +0000 Moved the organisation-specific widgets to their own folder. commit 3c6772c1c80ec4b32a9071d51352acbe12f7c309 Author: Alan Garny '' Date: Tue Feb 15 13:25:19 2011 +0000 Added the CommonWidget class which currently has only two methods: retranslateUi and defaultSettings. This class is used as a base class for all of our dock windows and their corresponding widget, if any. commit 4dab90f62f1bdd27dbc551266e1b7f61bc47e310 Author: Alan Garny '' Date: Tue Feb 15 11:56:49 2011 +0000 Renamed the Physiome Modelling Repository Client window to PMR Explorer window. Also made them visible within OpenCOR. Still need to create a super class to handle common features to our various dock windows. Indeed, for now, the defaultSettings method cannot be applied, meaning OpenCOR is currently ''\''broken'\''.' commit 2e441ff3d7a0f79a05764531ba4b9b878a0d290e Author: Alan Garny '' Date: Tue Feb 15 11:03:08 2011 +0000 Simple reorganisation of some code. commit b318069b8ef01ee7ffbe60f2db8ad84e16d72643 Author: Alan Garny '' Date: Tue Feb 15 10:39:55 2011 +0000 Oops, minor mistake in the documentation following the last commit. commit 89e41e0a3921e90bbd7d91dc3449945cc8e75dc6 Author: Alan Garny '' Date: Tue Feb 15 10:38:42 2011 +0000 Moved the organise windows to their own folder, thus making things a bit ''\''cleaner'\''.' commit e6cb01158a7f1e6cadb116fbcf43c6bc89a565ab Author: Alan Garny '' Date: Tue Feb 15 09:10:37 2011 +0000 Removed the icon associated with each dock window, since they 'don'\''t' make use of it on either Windows, Linux or Mac OS X. commit 306403e3a8d1391cc8e8497b8cdf5b3fea7a1804 Author: Alan Garny '' Date: Mon Feb 14 19:38:06 2011 +0000 Minor update to the Reset All feature. commit 2ecd6099bcb0872cfbe9e9fabdf8295871a94346 Author: Alan Garny '' Date: Mon Feb 14 18:17:02 2011 +0000 Updated the three new widgets '(might' have to create a CommonWidget class to encapsulate some features common to all of our 'widgets),' and created a corresponding window class for each of them. commit 7b9d05a975bcc1f951c4dd49045084e4c5dae581 Author: Alan Garny '' Date: Mon Feb 14 17:23:54 2011 +0000 Cleaned up src/ui/helpwindow.cpp. commit caf111e94f0b17f39ba42d38e6b6d538da3b7954 Author: Alan Garny '' Date: Mon Feb 14 17:15:55 2011 +0000 Created the skeleton of three new widgets: a PMR client '(to' access the CellML 'Repository),' a file browser '(to' access local CellML 'files),' and a file organiser '(to' organise our CellML files within 'OpenCOR).' commit 75d0ba6af82ba368c6683f0fa76f20e8f58a6c1d Author: Alan Garny '' Date: Mon Feb 14 15:34:10 2011 +0000 Dealt with some warnings in the QtMmlWidget library. commit bad15e547bffda72677442362d43aab019431830 Author: Alan Garny '' Date: Mon Feb 14 15:06:36 2011 +0000 Slight improvement to the CMakeLists.txt file for the QtMmlWidget library. commit 0430d8eae44b36392943dc1090b49b4f86cb81e3 Author: Alan Garny '' Date: Mon Feb 14 14:41:13 2011 +0000 Remove our patch file from our copy of the QtSingleApplication library. commit 59b2b3e6af5f13ffdab700f305afbb16ec7f9094 Author: Alan Garny '' Date: Mon Feb 14 14:38:15 2011 +0000 Minor update to the Reset All feature. commit 1f69706076394b4ab302166ae0993fcbacc3935e Author: Alan Garny '' Date: Mon Feb 14 14:21:46 2011 +0000 Added the QtMmlWidget library. commit b0b7436c3a5126832cf6c2339296aa8d7a6a98aa Author: Alan Garny '' Date: Mon Feb 14 13:46:10 2011 +0000 Updated the documentation in preparation for the addition of the QtMmlWidget third-party library. Also, simplified the links to the OpenCOR code SourceForge. commit 4c76b77501e1d6bb8e4d18791d4e40cdcf391f36 Author: Alan Garny '' Date: Mon Feb 14 13:25:18 2011 +0000 Improved our use of HTML/CSS for the documentation. commit 7d3af1beff7840dc53b386180680786aea0d1cbe Author: Alan Garny '' Date: Mon Feb 14 12:52:47 2011 +0000 Ask the user to confirm the Reset All feature. commit 1a28076a3ad5c993eecc2a2bad390188f6649388 Author: Alan Garny '' Date: Mon Feb 14 12:01:45 2011 +0000 Reformatted the CSS code in the HelpWindow widget. commit c51c3d1e5b54219af75f091b1a07b70b79211e28 Author: Alan Garny '' Date: Sun Feb 13 14:06:15 2011 +0000 Minor reformatting. commit 29ddf7f390a98654dbba3cb11d028f2d26dc6aed Author: Alan Garny '' Date: Sun Feb 13 02:37:22 2011 +0000 Some cleaning up in the CSS. Also replaced '#RRGGBB' with 'rgb(RRR,' GGG, 'BBB)' for colours, since 'it'\''s' easier to read/maintain. commit 014a7e0656ad6f2853fec5d61b70b0fc0bd47753 Author: Alan Garny '' Date: Sat Feb 12 19:01:36 2011 +0000 Reformatted the whole documentation '(use' lower-case for tags, attributes, 'etc.).' commit 7f74f75ab05a09d7413e7ec1d7b8be44bbd15a6e Author: Alan Garny '' Date: Sat Feb 12 16:28:26 2011 +0000 Replaced our use of the BR HTML tag by the DIV HTML, since BR is about presentation as opposed to contents, which is what HTML code should be all about '(presentation' being decided through 'CSS).' commit 4a09b8b4f99d74e4dd535cd5cd3482e38c312096 Author: Alan Garny '' Date: Sat Feb 12 16:19:02 2011 +0000 Replaced CSS bold code on the SPAN HTML tags by EM HTML tags. commit 312583504b7512d0f08b13818f3ddc2e0c9ea09c Author: Alan Garny '' Date: Sat Feb 12 16:10:51 2011 +0000 Replaced CSS italic code by EM HTML tags. commit 818f5f078c966feb6afd3859e2ba449368126a11 Author: Alan Garny '' Date: Sat Feb 12 00:24:12 2011 +0000 Slight improvement to the document '(CSS' style for the 'copyright).' commit 3e4c584a11f1f97693b62fd403de1034a64b6d20 Author: Alan Garny '' Date: Fri Feb 11 20:46:16 2011 +0000 Removed the rounded corners in the documentation, since it really 'doesn'\''t' look great on Mac OS X '(pixelised!).' commit 4a2cdb0e93dbd9e6e5fd1c5f6198a56512455f1d Author: Alan Garny '' Date: Fri Feb 11 18:49:28 2011 +0000 Might finally be done with the best practices document. Minor updates to the overall documentation. Removed some unnecesary include files. commit 094cef26af5f1f99e2abc63cdac965ab8ac0e4aa Author: Alan Garny '' Date: Fri Feb 11 16:47:42 2011 +0000 Added some more best practices rules, and updated the code a bit. commit d770f0d8b135558effbcf77adc37e4b32eb131a3 Author: Alan Garny '' Date: Fri Feb 11 15:28:34 2011 +0000 Some straightforward reformatting of the documentation. commit 440dcfe50384505618b1cfccc27664a5893a01e0 Author: Alan Garny '' Date: Fri Feb 11 15:05:27 2011 +0000 Some more information for the best practices document. commit 6d266fbf616c55a8b3565c3973094abbcf588b32 Author: Alan Garny '' Date: Fri Feb 11 14:49:15 2011 +0000 Added some more best practices rules, and updated the code accordingly. commit c59622664e6ca97a5c179f90d9d1b1b16fbf9b0d Author: Alan Garny '' Date: Fri Feb 11 11:48:25 2011 +0000 Reformatted the documentation a bit. commit 7aa86d1ef070510fc31e8ce354eba00a6b21b30c Author: Alan Garny '' Date: Fri Feb 11 10:54:36 2011 +0000 Some updates to the best practices document. commit 445ddc9726a2446fa2399b6590e11c1f494c0505 Author: Alan Garny '' Date: Thu Feb 10 19:06:49 2011 +0000 Added a couple of links to the developer documentation. commit 8026aad1222687f5ecee0641fa38aa3b94e51cf7 Author: Alan Garny '' Date: Thu Feb 10 19:01:07 2011 +0000 Slight improvement to the best practices document. commit fdd78bf5065c67082988b7fccc1405860fc77329 Author: Alan Garny '' Date: Thu Feb 10 18:26:30 2011 +0000 Added some more best practices rules. Updated the source code so that it respect them. commit 19971914c6407bffa44839c091c0d90348947367 Merge: 8dc277d73 531368ebb Author: Alan Garny '' Date: Tue Feb 8 18:35:18 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 8dc277d731708bb75aa8a8224b1e0c21dc0643ee Author: Alan Garny '' Date: Tue Feb 8 18:34:03 2011 +0000 Updated the best practices page, and modified the code to respect them. commit 9a7a8bceed7564f73fa6b4212574977463391c20 Author: Alan Garny '' Date: Mon Feb 7 18:19:53 2011 +0000 A few first rules for the coding style document. commit eea3dbce0b07cc93638c5cb9d829c538d786fe87 Author: Alan Garny '' Date: Mon Feb 7 17:35:07 2011 +0000 Updated the file structure bit of the best practices document. commit 531368ebb3fb0ebb34063104f218cbbfc4028786 Merge: aef460bc5 24a66e8dc Author: Alan Garny '' Date: Sun Feb 6 23:36:40 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit aef460bc54aea0770ea654e6372947f6d0452090 Author: Alan Garny '' Date: Sun Feb 6 23:36:08 2011 +0000 Removed an empty line in ui/mainwindow.cpp. commit 24a66e8dc0bab5cba023fa8ab3b12afb5af1b05a Merge: 3f03063dc 3d8dfd027 Author: Alan Garny '' Date: Sun Feb 6 18:10:10 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: doc/developer/bestPractices.html commit 3f03063dcc60f31bd2a2b76c03cfcfc3ab748365 Author: Alan Garny '' Date: Sun Feb 6 17:45:35 2011 +0000 Updated the developer docmentation. commit 3d8dfd02787ecea764823eed841a90be79517a33 Author: Alan Garny '' Date: Sun Feb 6 17:45:35 2011 +0000 Updated the developer docmentation. commit e8dcb44bf2987ca00cea632048889a1c994434d0 Author: Alan Garny '' Date: Sat Feb 5 19:08:34 2011 +0000 Added a couple of translations. commit 0ce32ce5364bdbfeb37b6854fca62e55d20a3720 Author: Alan Garny '' Date: Sat Feb 5 16:56:37 2011 +0000 Improved the stylesheet for the buttons in the Help window. commit 444f1cfcd4b1eae6c29a4d15c1c020ead8c9c0ea Author: Alan Garny '' Date: Sat Feb 5 16:11:45 2011 +0000 Minor update to the main window UI file '(after' noticing that there is a context menu that can be shown when right clicking within the toolbar area, and blank menu items were shown for the File and Help 'toolbars).' commit bdb9ad885f3fdd00a6c50e79de129cc5887b3e22 Author: Alan Garny '' Date: Fri Feb 4 19:17:05 2011 +0000 Minor update to the documentation. commit db29506c6736c50ee624224d6596e22beaa8abfa Author: Alan Garny '' Date: Fri Feb 4 18:40:30 2011 +0000 Updated the user documentation, since the help buttons look fine now on Linux since we applied our style sheet code. commit 0224a1a41d77fe2a7bcf300b05510199bf29d315 Author: Alan Garny '' Date: Fri Feb 4 18:37:04 2011 +0000 Toying with the dropping of files on OpenCOR. commit b95ba3eaaf904fe33e21a7ae51c2db461a8581a0 Author: Alan Garny '' Date: Fri Feb 4 16:41:08 2011 +0000 Minor update to cleanproj for Mac OS X. commit 287715a4d6dc47bf0c2b7a43994d149dc64e8609 Author: Alan Garny '' Date: Fri Feb 4 16:00:31 2011 +0000 Minor fix to the 'cleanproj[.bat]' files '(didn'\''t' take into account the _CPack_Packages folder which gets creaked when packaging 'OpenCOR).' commit 57aafd0e6c573c1601560ecd7698097b2f9ce4ee Author: Alan Garny '' Date: Fri Feb 4 15:42:02 2011 +0000 Updated the developer documentation as a result of the previous commit. commit 6c4f51a295101cd5240fbe6332d9371133a657ef Author: Alan Garny '' Date: Fri Feb 4 15:40:30 2011 +0000 Finally figured out what was wrong with running OpenCOR on Mac OS X and resulting in several messages being displayed about OpenCOR loading two different sets of Qt binaries. Basically, it was ''\''just'\''' a matter of letting the SQLite plugin know that it should use our embedded version of the Qt binaries rather than the one installed on 'someone'\''s' system. For this, one must use the install_name_tool command with the -change option. commit 536ce9b850ef97ec18fb9a75d05a1e6c33e221f6 Author: Alan Garny '' Date: Fri Feb 4 14:57:54 2011 +0000 Added some style sheet code for the help buttons '(since' it really looks ugly on Mac OS 'X).' Note that, when pressed, the image on the button 'shouldn'\''t' move ''\''down-right'\''' '(unlike' on Windows and 'Linux),' which seems to be the expected behaviour on that platform. commit 491bcaa290cbde162801ab629b31cf60c336dc8b Author: Alan Garny '' Date: Fri Feb 4 12:16:31 2011 +0000 Updated the execution bit of cleanprojall. commit e559f3ef345835014ebd51aba2ecbb076951cbb1 Author: Alan Garny '' Date: Fri Feb 4 12:13:15 2011 +0000 Done with implementing an ''\''optimised'\''' build environment where one can decide to clean only 'OpenCOR'\''s' files or also the third-party 'libraries'\''' files. commit 907dea79688161a25fe2883a660a36b2854eb6b4 Author: Alan Garny '' Date: Fri Feb 4 11:41:12 2011 +0000 Updated the 'packageproj[.bat]' files. commit e21719ccdd09506e274002659fbfbc5f820fce77 Author: Alan Garny '' Date: Fri Feb 4 10:39:50 2011 +0000 Added a new set of batch/shell files/scripts aimed at cleaning all of the OpenCOR environment '(i.e.' including third-party 'libraries).' commit 82d0e5760f1fd3f6b3655d93c201fbbc8c5afffd Author: Alan Garny '' Date: Fri Feb 4 10:10:12 2011 +0000 Renamed the batch/script files in the view of optimising the build system. commit 04c8340bee628ff8ad62099782b792412dd4e5be Author: Alan Garny '' Date: Fri Feb 4 10:02:29 2011 +0000 Added a comment to the main CMakeLists.txt file. commit 28b2ebab0110551d4665a9c2b8ba74dec59d8307 Author: Alan Garny '' Date: Thu Feb 3 19:48:20 2011 +0000 Updated the help and, in particular, the developer one to discuss the messages that get generated when running OpenCOR on Mac OS X. commit 04054adfc9f6d009370eeea36e9d2c647d3169e9 Author: Alan Garny '' Date: Thu Feb 3 17:42:58 2011 +0000 Updated a comment in the main CMakeLists.txt. commit 94a70148590d5c6b415c8a4c66c8ecc8d8141b9b Author: Alan Garny '' Date: Thu Feb 3 17:33:30 2011 +0000 Slight improvements to the main CMakeLists.txt file. commit bd2bdf2d3cb402c3eb3cc81c788046f26fed5b68 Author: Alan Garny '' Date: Thu Feb 3 13:00:06 2011 +0000 Removed an unnecessary connection for the status bar. commit 39d75cc58076deeb215d7835692b11e613e04491 Author: Alan Garny '' Date: Thu Feb 3 12:54:08 2011 +0000 Added a way to show/hide the status bar '(trying' to offer a means to the user to have as much screen estate as 'possible).' commit dcea1e8535283fc35dce76cb487b25707cf6597d Author: Alan Garny '' Date: Thu Feb 3 11:54:53 2011 +0000 Can now switch to / back from full screen mode. commit 44f4ae4e383b3f415889f2fd5158daae71b99173 Merge: f52dc87e3 aa490e605 Author: Alan Garny '' Date: Thu Feb 3 09:19:58 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit f52dc87e3c7cf67236af004fb5c95b4caf30df73 Author: Alan Garny '' Date: Thu Feb 3 09:13:55 2011 +0000 Added a background image '(the' CellML 'logo)' to the central widget. commit aa490e60518a74632eefbf5cf2841973de551206 Author: Alan Garny '' Date: Wed Feb 2 21:05:00 2011 +0000 Minor update to MainWindow::notYetImplemented. commit 4e0692b7146f4129f1eb44f0217b83261194864e Author: Alan Garny '' Date: Wed Feb 2 18:59:13 2011 +0000 Oops, I was messing around the central widget and forgot to save the .ui file before 'committing!' commit a333835fc7af8a9e334b679df089f7c65261e5a0 Author: Alan Garny '' Date: Wed Feb 2 18:58:06 2011 +0000 Added a central widget which will be used as a... central 'widget!' commit 5a6dc6ca68c4453bbc14979227de0342264afbe9 Author: Alan Garny '' Date: Wed Feb 2 18:03:43 2011 +0000 Updated the Help toolbar. commit d2fc20decf7e8adc47dc5823845ca5976340228c Author: Alan Garny '' Date: Wed Feb 2 17:57:41 2011 +0000 Had missed one translation. Updated another translation. commit 467d942d7310002b336fd79ed0a7d35f79c31e55 Author: Alan Garny '' Date: Wed Feb 2 17:53:34 2011 +0000 Added a file toolbar. commit 65f2a21390489fc240a7bf11bf4202af3d804660 Author: Alan Garny '' Date: Wed Feb 2 17:06:19 2011 +0000 Added the QScintilla library. commit 51dc0fb3559ea8e86a3c12253ba91c69e4e0dd15 Author: Alan Garny '' Date: Wed Feb 2 14:37:28 2011 +0000 Simple aesthetic clean up. Added a known ''\''issue'\''' to the 'user'\''s' documentation. commit 360499e9f3ad8c3513ddeb9f7b8cde29995efa10 Author: Alan Garny '' Date: Tue Feb 1 18:08:32 2011 +0000 Forgot the Qt bug that forces one to hard code the iconVisibleInMenu property so that it can work fine on Linux '(and' maybe also on Mac OS 'X).' commit e472167afcfa4deee33e97b3d8a3775b08aa626b Author: Alan Garny '' Date: Tue Feb 1 18:05:04 2011 +0000 Added a few menu items to the File menu. commit 582cc1b1268fd1381cac2c4105e65f097e342d75 Author: Alan Garny '' Date: Tue Feb 1 15:21:48 2011 +0000 Fixed a small issue with the help '(which' got introduced when renaming user/knownIssues.html to user/knownIssuesAndLimitations.html. commit 65c8837d946a7fa3ab4d6095a912e2926c688e12 Author: Alan Garny '' Date: Tue Feb 1 13:23:56 2011 +0000 Minor fix the locale change handling. commit 14ca747f60636a6223ade0b4d3d543d8a2b8f48f Author: Alan Garny '' Date: Tue Feb 1 11:41:18 2011 +0000 Added support for the use of the 'system'\''s' language as the language to be used by OpenCOR. Updated the documentation to mention something about the language used by OpenCOR. commit b042c92908f63e512e5265b77c2c342978228a2d Merge: baf97b33c 811605582 Author: Alan Garny '' Date: Mon Jan 31 18:18:20 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit baf97b33c0326867b16965ee04b1e95dc7e01d5a Author: Alan Garny '' Date: Mon Jan 31 16:44:21 2011 +0000 Removed any reference to a '"name' of the 'organisation".' Also added the Qt French translations as a resource to OpenCOR. '(Still' 'can'\''t' get Qt-specific things to translate 'though!' ':s)' Edit: the reason I 'couldn'\''t' get Qt-specific things to translate is because I was testing with a QFileDialog and, by default, thise makes use of the native file dialog window which language cannot be translated by Qt. If one really wants to use a translated version of the file dialog, then we must use the Qt version of that dialog by specifying the QFileDialog::DontUseNativeDialog option. However, this looks rather ugly on Windows 7 '('\''ok'\''' on Linux and not sure on Mac OS 'X).' So, bottom line: we leave things as they are. If there is something Qt-specific that can be translated, then great otherwise tough... for now at least. commit 811605582db6d02e7431b5daeef22135ba8075d9 Author: Alan Garny '' Date: Mon Jan 31 16:44:21 2011 +0000 Removed any reference to a '"name' of the 'organisation".' Also added the Qt French translations as a resource to OpenCOR. '(Still' 'can'\''t' get Qt-specific things to translate 'though!' ':s)' commit 301851b6f7c6e8972359374a2d672a9b7ab8876f Author: Alan Garny '' Date: Sun Jan 30 14:38:32 2011 +0000 Added an about option for the console version of OpenCOR. commit 19f1544e73eca01ed982f182a31ef67fafa47cf3 Author: Alan Garny '' Date: Sun Jan 30 13:09:25 2011 +0000 Implemented a safeguard mechanism preventing us from accidentally running a non-renamed '(to' ''\''.com'\'')' version of the console version of OpenCOR. Indeed, this used to keep recalling the console version '(since' we assumed the console version had an extension of ''\''.com'\''' and we were therefore launching the ''\''.exe'\''' version of OpenCOR, which happened to still the console version, hence the vicious circle in which we 'were...).' commit 3aa2b13921ce72786a39a53f9eaf8ff12c1e6c7f Author: Alan Garny '' Date: Sun Jan 30 12:39:21 2011 +0000 Aesthetic change to winConsole/CMakeLists.txt. commit 2167cb02984a9bf92869877f015fb158403bffc7 Author: Alan Garny '' Date: Sun Jan 30 12:38:15 2011 +0000 Minor problem with the setting up of link flags properties on Mac OS X '(and' probably on Linux 'too).' commit 9c86b677419a6cc74df770d651443871ad1985f0 Author: Alan Garny '' Date: Sun Jan 30 12:32:42 2011 +0000 Can now display OpenCOR version information '(at' the console 'level).' commit b74bf4a9f46f16a55929f0ae381353647b8a7ba3 Author: Alan Garny '' Date: Sun Jan 30 12:21:44 2011 +0000 Now make use of initApplication '(the' initialisation code we moved to 'src/misc/common.[cpp|h])!' commit 6ab09325eb3de2f9ccd7049a489581591a69c168 Author: Alan Garny '' Date: Sun Jan 30 12:05:24 2011 +0000 Renamed 'src/misc/console.[cpp|h]' to 'src/misc/common.[cpp|h],' and moved some common '(for' the console and GUI version of 'OpenCOR)' initial setting up code there. commit f05cc9db23af810498b31c8a06355705612ddac4 Author: Alan Garny '' Date: Sun Jan 30 12:02:51 2011 +0000 Fixed a small issue with the link flags properties in our main CMakeLists.txt file. commit f60338aafc66b7bed4f9c8d5bfd2dee9080908b9 Author: Alan Garny '' Date: Sun Jan 30 01:15:47 2011 +0000 Minor change to the CMakeLists.txt file. commit 848aeec38ccff9b824e5a916e1efa8eadc83f669 Author: Alan Garny '' Date: Sun Jan 30 01:08:05 2011 +0000 The -Wl,-s linker option is now obsolete on Mac OS X, so removed it for that platform. commit d412c586d49d80857cfb38bd58880c9370f774cc Author: Alan Garny '' Date: Sun Jan 30 00:53:56 2011 +0000 Finally found what used to make the .com '(consolve)' version of OpenCOR so damn big '(the' symbols were all 'included!).' Also improved the cleanall.bat file. commit 935c516ec9ad7c8801254e5a2f622c07eb8bf617 Author: Alan Garny '' Date: Sat Jan 29 23:34:55 2011 +0000 Minor updates to the '[winConsole/]CMakeLists.txt' files. commit 57fd30fb010dc3f279a7acb376d5e0bf5fd4220a Author: Alan Garny '' Date: Sat Jan 29 23:10:31 2011 +0000 Slight overlook in the list of header files in the CMakeLists.txt file. commit 961d972724b23c4c45e991fe2fa1e968ad092af6 Author: Alan Garny '' Date: Sat Jan 29 23:04:28 2011 +0000 Minor updates to the 'cleanal[.bat]' files, as well as the makeall.bat and run.bat files. commit cad3c213fa4fa4fb103966c17db78fa132ab219a Author: Alan Garny '' Date: Sat Jan 29 18:11:46 2011 +0000 Some minor changes. commit 88b128fe5d67942d6d265ae861ecddd35aa973ab Author: Alan Garny '' Date: Sat Jan 29 15:21:39 2011 +0000 Updated the 'packageall[.bat]' files as a result of renaming the 'buildall[.bat]' files. commit bf5c750b2328f6cfe307731b5926d39d6b3a2fb6 Author: Alan Garny '' Date: Sat Jan 29 15:20:55 2011 +0000 Renamed the 'buildall[.bat]' files and updated the documentation accordingly. commit a2e84132f9d0326a6f8ccaf7297dc0680c897c60 Author: Alan Garny '' Date: Sat Jan 29 08:39:16 2011 +0000 Further cleaning up of CMakeLists.txt files. commit b82def0966e467371de31f85102817f26b5d66e1 Author: Alan Garny '' Date: Sat Jan 29 08:08:41 2011 +0000 Minor cleaning up of the CMakeLists.txt file now. commit 8cb4e9ab2090c9c33c26afa84f7aa63a894ed508 Author: Alan Garny '' Date: Sat Jan 29 08:00:46 2011 +0000 Minor cleaning up of the winConsole/CMakeLists.txt file. commit 62f9df5cc481acb92413e9c06fb3757ebde9def9 Author: Alan Garny '' Date: Fri Jan 28 21:36:35 2011 +0000 Minor updates. commit 37d7fe8be9c85afdae398784e7f9a11d2debc8a9 Author: Alan Garny '' Date: Fri Jan 28 20:43:43 2011 +0000 Now package '(on' 'Windows)' the .com '(console)' version of OpenCOR, as well as OpenCOR.bat. Next, we will have to find why the console version of OpenCOR is so damn big '(3.6MB!).' commit b0abc843b1d1b6bdcc137b14049287523c94a3a7 Author: Alan Garny '' Date: Fri Jan 28 20:29:51 2011 +0000 Remembered the ''\''proper'\''' way to use ADD_CUSTOM_COMMAND, so now can make the move of the console version of OpenCOR to the main build folder using CMake '(as' opposed to through using 'buildall.bat).' commit b0d5df59ce3a29dadb20af71c112aa3db6f981f2 Author: Alan Garny '' Date: Fri Jan 28 20:16:21 2011 +0000 Slight update to the developer documentation '(as' a result of run.bat having been 'added).' commit 632d991be28af93db329ad7ea9b4221a9f739686 Author: Alan Garny '' Date: Fri Jan 28 19:59:26 2011 +0000 Can now move the .com '(console)' version of OpenCOR to the main build folder. Note that we do this within the buildall.bat file as it 'doesn'\''t' seem possible through CMake '(I' tried ADD_CUSTOM_BUILD with POST_BUILD, but to no 'avail).' Also created a run.bat file so that we can run OpenCOR from an existing console window. Indeed, to use run.vbs will create a new console window, so... commit 58fb383600cb0eb56160a9a533d6c4c10b680454 Author: Alan Garny '' Date: Fri Jan 28 19:06:23 2011 +0000 Fixed a few remaining renaming issues '(cmdLine' to 'console).' commit 7fa97b5696a31f46f6c30388d43c2f971998fa72 Author: Alan Garny '' Date: Fri Jan 28 19:01:50 2011 +0000 Oops, messed the winConsole/CMakeLists.txt file at some 'point!' commit d8798e0fcf482ba5ee1f3ca0fbe772a6d3bf9c36 Author: Alan Garny '' Date: Fri Jan 28 18:59:39 2011 +0000 Renamed the winCmdLine folder to winConsole. commit de662f3d8861369753f9ea3ddef2165a680ac196 Author: Alan Garny '' Date: Fri Jan 28 18:56:54 2011 +0000 Renamed command line to console everywhere, except for winCmdLine which will be done next. commit 4a380b958029e2d57ee6808254eb39a43fb37221 Author: Alan Garny '' Date: Fri Jan 28 17:58:47 2011 +0000 Can now build a console application. commit c20c7a1189f0729fae53c0a91357c36daa8bdd90 Author: Alan Garny '' Date: Fri Jan 28 17:44:41 2011 +0000 Can now generate a command line version of OpenCOR, but it 'doesn'\''t' work '(!!)' and still needs to be renamed to .com and then moved to the main build folder. Also, we need to include it to the Windows packaging. commit 7e1e694dfec15aad332a00a941040d6954601433 Author: Alan Garny '' Date: Fri Jan 28 16:30:57 2011 +0000 Minor improvements to the command line options stuff. commit a97107ba421a36492975021765b2741f09c7d96e Author: Alan Garny '' Date: Fri Jan 28 16:05:26 2011 +0000 Argh, I was developing on Windows and 'hadn'\''t' got a chance to test on Linux. Now that 'it'\''s' done, I had to fix a couple of minor issues. commit 2fcb6dd0f676b6b0e7b474cd08cedae1e336b4fd Author: Alan Garny '' Date: Fri Jan 28 16:02:34 2011 +0000 Finally found a way to make OpenCOR both a console and a GUI application on Windows '(not' a problem on Linux and Mac OS 'X),' so working towards that. commit 76fed28ec025f7c1064511a7e06e1f039fe82261 Author: Alan Garny '' Date: Fri Jan 28 10:22:21 2011 +0000 Some minor cleaning up. commit c8836fbc3eb80460c18e668ac4c7518fdd8dcc21 Author: Alan Garny '' Date: Wed Jan 26 15:59:52 2011 +0000 Some very minor cleaning up. commit 7a916f0ff771025bf39802e3233714192dd179e2 Author: Alan Garny '' Date: Tue Jan 25 16:46:26 2011 +0000 Updated the QtSingleApplication tree. commit ef8e42e8d752ff8a1ec8fb2e5ce28e4eedf661a2 Author: Alan Garny '' Date: Tue Jan 25 16:32:08 2011 +0000 Some cleaning up. Set up the orgnization name at the application level. commit 793f7a4796dac0379e17f7fed466ad5ef0d0bb37 Author: Alan Garny '' Date: Tue Jan 25 16:25:55 2011 +0000 Now use the QxTemporaryDir from the LibQxt library, rather than ''\''hacking'\''' our own solution around QTemporaryFile. commit 6326f6369f8de38c3196feb29146f5d442daac38 Author: Alan Garny '' Date: Tue Jan 25 14:53:49 2011 +0000 Slight improvement to our use of the LibQxt library. commit 4f7892c4fc5a9d5c465e809ba1afed48742bd721 Author: Alan Garny '' Date: Tue Jan 25 13:37:04 2011 +0000 Added the QxtCommandOptions class from the LibQxt library. Updated the main CMakeLists.txt file as a result of it, as well as the developer documentation. commit 29039624c70f02195598399a11e03643574b2912 Author: Alan Garny '' Date: Tue Jan 25 12:09:03 2011 +0000 Cleaned up the QtSingleApplication/CMakeLists.txt file. commit 1c08747bf29734dd4c82d0f1ee9f676c28a318a6 Author: Alan Garny '' Date: Mon Jan 24 13:01:06 2011 +0000 Updated the shell scripts that call OpenCOR, so that they support the passing of arguments to OpenCOR. commit 2a1ec0c97e8e011cc2f9eb04763128fd320c1608 Author: Alan Garny '' Date: Mon Jan 24 12:44:35 2011 +0000 Updated the VBScript files to run OpenCOR, so that they now support arguments that are passed to OpenCOR. commit 314e725be1ab566f4c0931ac65990fc82cf17c3f Author: Alan Garny '' Date: Mon Jan 24 11:49:32 2011 +0000 Updated the information about the command line feature for OpenCOR. Also added some information about the multi-cellular feature which would be nice to have in OpenCOR at some point. commit e8c643174d947d20cfc568491a95acb1f25a4c40 Author: Alan Garny '' Date: Mon Jan 24 11:12:02 2011 +0000 Slight update to the 'developer'\''s' miscellaneous documentation page. commit b1c0d0db0184b9bab39d24ac13214c86eb28508b Author: Alan Garny '' Date: Mon Jan 24 11:08:50 2011 +0000 Renamed the scrapbook.html file to miscellaneous.html, since scrapbook is definitely the wrong wrod for what it is meant to be. commit 7cf6c82475aaf89ccf61b21f7b78e5c2fc9cd0a4 Author: Alan Garny '' Date: Mon Jan 24 07:53:01 2011 +0000 Minor update to the 'developer'\''s' documentation '(scrapbook).' commit 47c59bbc8079522bac230cfb463820a7c057cc66 Author: Alan Garny '' Date: Sat Jan 22 17:44:07 2011 +0000 ... and yet some minor '(HTML)' updates to the help files. commit 540f54795c3352c4f2046c9140e670f2fea20972 Author: Alan Garny '' Date: Sat Jan 22 17:25:35 2011 +0000 Some further minor '(HTML)' updates to the help files. commit 25050e18eb96b179550c8aea4e2fdb9ee65234ca Author: Alan Garny '' Date: Sat Jan 22 16:44:11 2011 +0000 Minor '(HTML)' updates to the info files. commit 26cc86ef2bcf9011db40daa75b74879e3585628f Author: Alan Garny '' Date: Fri Jan 21 18:07:23 2011 +0000 Updated the developer documentation. commit 63ab062d9cb4ab8cb460d4f22a9ea3d0a67a3e72 Author: Alan Garny '' Date: Thu Jan 20 18:46:34 2011 +0000 Added some template developer documents which will get populated later on. commit 411f29f0eab456f6da41966922f3118bc7bf3682 Author: Alan Garny '' Date: Thu Jan 20 17:47:51 2011 +0000 Minor reformatting. commit 2f1da1844e7fa1995400506ed76a34e279c4ed76 Author: Alan Garny '' Date: Thu Jan 20 17:42:59 2011 +0000 Huge commit, i.e. something that should never have 'happened!' Anyway, re-allowed text selection in the help window '(after' all, we may, in the future, provide information that the user may want to copy/paste, 'so...).' Updated the help window to support the text selection, and added a context menu. Reworked '(and' made 'cleaner)' the code for the restart of OpenCOR '(which' happens as a result of a reset 'all).' Various cleaning ups '(e.g.' initialize all class 'members).' Commented the code as much as possible '(this' should become good 'practice!).' commit 1cfc907efb31213d1c36a0728a929ff46d8c0552 Author: Alan Garny '' Date: Thu Jan 20 11:09:01 2011 +0000 Updated the flag icons. commit 7ad749c2da734ed9dfb8025e27483c24b6b587b9 Author: Alan Garny '' Date: Wed Jan 19 20:49:32 2011 +0000 Rearranged the help files, so that we now have a user section and a developer section, of which only the former is deployed with OpenCOR. commit 85af639e1f4452c17abf2a102c0f2afc0eb5fc3f Author: Alan Garny '' Date: Wed Jan 19 20:20:32 2011 +0000 Removed the need for translations in the help widget. Inded, this proved to be a bit tricky and, in the end, unnecessary to translate '(since' the end user should never see the error message that results from an unevailable help 'page),' so... commit 2732190c2ed90a75ad6a12bc0500a13ea39a1843 Author: Alan Garny '' Date: Wed Jan 19 17:42:17 2011 +0000 The translation of the help window resulted in the ''\''toolbar'\''' buttons being wrongly enabled or disabled, so upon translation we now make sure to reset the enabled state of the various actions on which the ''\''toolbar'\''' buttons rely. commit 53c4be5cb808cc30dc77d60efa7745c2d44cac86 Author: Alan Garny '' Date: Wed Jan 19 17:33:05 2011 +0000 Addressed a small issue related to the restart of OpenCOR following a reset all. commit e957401deafb7254acd2645c84b2e6ed4a19c6cd Author: Alan Garny '' Date: Wed Jan 19 17:09:09 2011 +0000 Updated the French translations. Also made sure that obsolete translations get removed. commit 005f3bd423c694f19cb9833875a73140f0597aa5 Author: Alan Garny '' Date: Wed Jan 19 16:58:56 2011 +0000 Ensure that the help window also gets translated. Added the remaining French translations. commit 775758d2c05042d6d99c80859a5b140f432303e8 Author: Alan Garny '' Date: Wed Jan 19 16:09:10 2011 +0000 Moved the translators to the MainWindow class '(as' opposed to declaring them in main.cpp and passing them to the MainWindow 'class).' commit bed88f14250b1608093706e1357e2d5fb0b4d5bb Author: Alan Garny '' Date: Wed Jan 19 16:01:51 2011 +0000 Added a few more French translations. commit 250d7dd36ecd5d73e46e91562f280fc3f959337a Author: Alan Garny '' Date: Wed Jan 19 15:44:08 2011 +0000 Finally spotted what I had missed for the translation to 'work!' commit cb0dcd78f44baac8540242a374df75493fe112bb Author: Alan Garny '' Date: Wed Jan 19 15:17:43 2011 +0000 Renamed the French translation file '(see' previous 'commit).' commit 3c67d1eb45fae574f7f8680bf2cdad985750bb25 Author: Alan Garny '' Date: Wed Jan 19 15:16:25 2011 +0000 Just realised that Qt translation files use '"_fr"' '(as' opposed to, say, '"_Fr")' and that, therefore, on Linux / Mac OS X, this causes problems '(because' of the case sensitiveness of filenames on those 'systems),' so... reverting a few things... '(Another' commit will follow from Linux to have the translation file renamed, since it 'can'\''t' be done on Windows -- because of the non case sensitiveness of filenames on that 'system).' commit 78e466378345d0f07a716b93433df2b5e3968831 Author: Alan Garny '' Date: Wed Jan 19 15:06:11 2011 +0000 Updated the CMakeLists.txt file. commit ce8d4fb517eb3f37e65b512b72d9265af04089ab Author: Alan Garny '' Date: Wed Jan 19 15:00:38 2011 +0000 Argh, something I undid in earlier commit was actually very much 'necessary!' commit ba5df88004e772fa720f93fb8cd9b01c1de4be4e Author: Alan Garny '' Date: Wed Jan 19 14:55:01 2011 +0000 Trivial update to the CMakeLists.txt file. commit d1eb176374307be200562c663a9bfb9065587e7c Author: Alan Garny '' Date: Wed Jan 19 14:19:38 2011 +0000 Some cleaning up. commit 0cc8d58a91a85174da188d6356c631c4925c358d Author: Alan Garny '' Date: Wed Jan 19 12:18:06 2011 +0000 Various cleaning ups. commit ba76aee53055e1706fee6e8f03215a0642e8941e Author: Alan Garny '' Date: Wed Jan 19 12:08:21 2011 +0000 Fixed a small issue with our resource file '(as' a result of renaming the French translation 'file).' commit 88849668b8c650c2cdcfeb5dede65e9ab639219a Author: Alan Garny '' Date: Wed Jan 19 12:01:23 2011 +0000 Some more cleaning up of the CMakeLists.txt file. commit 97da785ef70d220cc6225fbadb90f3e841b3009a Author: Alan Garny '' Date: Wed Jan 19 11:51:12 2011 +0000 Added the original language for the French translation. commit 5863b348b17c0373e02a578fab8f143beef0bae7 Author: Alan Garny '' Date: Wed Jan 19 11:23:09 2011 +0000 Cleaned up the CMakeLists.txt file '(some' variable names were unnecessarily 'complicated).' commit 838cdfeafc6ce232a3652e2dec3f2ec18ec2a51a Author: Alan Garny '' Date: Wed Jan 19 11:10:20 2011 +0000 Reworked some of the locale code. Some cleaning up. commit aaa7d3e05487aedb4b7c926c98d0dc32a22683df Author: Alan Garny '' Date: Wed Jan 19 11:08:06 2011 +0000 Renamed the translation file. commit 9a2920dfba2ce0fdd66a5f2dc0b6a9769a50d15a Author: Alan Garny '' Date: Tue Jan 18 20:22:32 2011 +0000 Fixed a small issue with doing a reset all '(and' therefore restarting 'OpenCOR)' on Mac OS X. Some cleaning up. commit 61e38b0eb7856b987dbf56ccd1a512d889e1a492 Author: Alan Garny '' Date: Tue Jan 18 18:59:46 2011 +0000 Further work on the internationalisation bit. Various cleaning ups. commit dfc7b3df318f15accdf9e946760ea7fdbb82e489 Author: Alan Garny '' Date: Tue Jan 18 16:55:30 2011 +0000 Still working on the internationalisation bit. commit 2caf1dc0a8d4fbb8aeba1d7eee7cc9132443c94d Author: Alan Garny '' Date: Tue Jan 18 16:13:29 2011 +0000 Started work on internationalisation. commit 1b59f06efcdc30c464e7fb6857579a87e454eb40 Author: Alan Garny '' Date: Tue Jan 18 15:29:29 2011 +0000 Added a scrapbook to the developers section of the help. Various help-related improvements. commit 8ac727acc55a91e62ddcfc295e233ac9b0259e8f Author: Alan Garny '' Date: Tue Jan 18 12:52:19 2011 +0000 Reorganised the help file a bit. commit dc23e99b36431632ac1b5d16dbb36669cbdc293b Author: Alan Garny '' Date: Tue Jan 18 10:55:49 2011 +0000 Found a way to ''\''properly'\''' restart OpenCOR '(as' a result of a reset 'all).' commit 56f8fce3c6d53deb1ba22ae65f47f34e47dbdc68 Merge: b762ef0e3 725d8073a Author: Alan Garny '' Date: Mon Jan 17 19:01:39 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit b762ef0e3a4cc4a6a7a002b7f82b978cc75da0b0 Author: Alan Garny '' Date: Mon Jan 17 17:47:30 2011 +0000 Move the no text selection style '(for' the 'help)' into a resource '(a' bit neater and should work for text files too, should we ever have some in the 'help).' commit d40216ce3485e23c9cb2bba3c35e9a659a7cb98d Author: Alan Garny '' Date: Mon Jan 17 16:53:16 2011 +0000 Minor ''\''improvement'\''' to the name of the temporary folder. commit 455cae7a2e6565ad42cb3b7597fb6e9e6f7bea98 Author: Alan Garny '' Date: Mon Jan 17 15:46:58 2011 +0000 Changed the detault layout of OpenCOR by having the help docked to the main window '(as' opposed to having it 'floating).' Looks more ''\''integrated'\''.' As a result, we had to find a way to get the reset all feature to work ''\''properly'\''.' Indeed, the dimensions of the docked help window 'wouldn'\''t' get reset. The way around this was to have OpenCOR automatically restarted after clearing the user settings. There is, however, one big downside to this solution at the moment: QWebView 'doesn'\''t' render things properly anymore. Surely, there must be a way to get that to 'work...?!' commit 9453904d511113e6e5cda629d1cc3b12865183ec Author: Alan Garny '' Date: Mon Jan 17 15:32:49 2011 +0000 Default size for the help widget. commit 725d8073a33bd0616104aec934f6fae63e96377b Author: Alan Garny '' Date: Sun Jan 16 15:32:06 2011 +0000 Minor refactoring. commit 79d00b4361bacf899818e2b18b729ee77b94fde0 Author: Alan Garny '' Date: Sun Jan 16 00:39:16 2011 +0000 Cosmetic change to the 'run[.vbs]' files. commit e25a4fb99c1f9208675044dc0df5f39f14729ca0 Author: Alan Garny '' Date: Sat Jan 15 16:57:24 2011 +0000 Some cleaning up. commit c4bd32cd183352159e1ff1e80f1841c004c9a44a Author: Alan Garny '' Date: Sat Jan 15 16:32:25 2011 +0000 Improved the GUI side of the help window '(by' enabling/disabling the homepage button when 'appropriate).' commit 0b131d7e97d4f3f7fdd637f03f3965915faa27a4 Author: Alan Garny '' Date: Sat Jan 15 15:16:11 2011 +0000 Slight improvement to the help window. Also makes the help window visible by default '(this' could be useful for someone who uses OpenCOR for the first 'time).' commit 4d0516ced2ac7e4008e4d2750e855fd76afd8229 Author: Alan Garny '' Date: Sat Jan 15 01:56:11 2011 +0000 Slight improvement to the GUI side of the help window. commit 53e4c67c933366fa460eed32d7338429e50d4501 Author: Alan Garny '' Date: Fri Jan 14 20:43:36 2011 +0000 Updated the about box. commit fb6e839e6ff7cc9cdc187a808ed21411b896f79c Author: Alan Garny '' Date: Fri Jan 14 19:30:54 2011 +0000 Forgot to update the 'cleanall[.bat]' files. commit 12721d9642d396454583372c4ec4948c26fbbf29 Author: Alan Garny '' Date: Fri Jan 14 19:28:15 2011 +0000 Improved the version the version of OpenCOR is handled, i.e. directly within CMakeLists.txt, as it should, rather than in a version file, as it was done before. commit c4fbc59fc3ff1344bca71547fc4805fe64e4934f Author: Alan Garny '' Date: Fri Jan 14 19:13:59 2011 +0000 Slight improvement to the help widget. commit dcc73fd2d02d68404504511ad892b2d3f3b6eeb6 Author: Alan Garny '' Date: Fri Jan 14 19:08:01 2011 +0000 Improved the handling of the zooming in/out within help window. commit 3b890a284abad1a0be4a01240c4a9885b387913f Author: Alan Garny '' Date: Fri Jan 14 17:16:06 2011 +0000 Added the build information to the help '(under' the programming 'section).' Various updates to the help in general. Added a way to retrieve the default zoom for the help. commit 717de493284bf7d0ddfeecef9d9c0d29ca09f8c9 Author: Alan Garny '' Date: Fri Jan 14 15:15:03 2011 +0000 Updated the CMakeLists.txt file. Updated and restructured the help. commit d60d35848ac1ce87a58b1c483ef6bc9a53478f3b Author: Alan Garny '' Date: Fri Jan 14 15:03:20 2011 +0000 Renamed a file. commit 5a6cb955dc780633fa0c304021dde2217d848e42 Author: Alan Garny '' Date: Fri Jan 14 13:19:06 2011 +0000 Added zoom in/out buttons to the help window. commit 4500a69e3c46381694f3c235c677cd17d887b417 Author: Alan Garny '' Date: Fri Jan 14 12:28:19 2011 +0000 Reworked the help window by making use of actions '(i.e.' the ''\''proper'\''' way of doing 'things).' commit 550c789de42b1beffb35267af7eb821bb93de1e0 Author: Alan Garny '' Date: Fri Jan 14 11:34:17 2011 +0000 Re-allowed the text selection of a web page '(since' a user may need that after 'all).' Re-allowed the opening of external URLs in the 'user'\''s' default web browser '(probably' better indeed to keep in the help window only things that are part of OpenCOR 'itself).' commit 3fcda688b945269e282d4ca1f797e20cf30b4374 Author: Alan Garny '' Date: Fri Jan 14 10:35:29 2011 +0000 Removed the support for Qt Assistance in the help, since we 'don'\''t' use it in the end and that the help can be tested in a normal web browser, if needed. commit fd97039d5a8869d398a207d0400a8f541bb32d4b Author: Alan Garny '' Date: Fri Jan 14 00:52:06 2011 +0000 Rather than only being able to increase/decrease the size of the text in the help window, we can now increase/decrease the size of everything '(i.e.' proper zooming 'in/out).' commit 562c6fca114be311dd69a077c6dc19d0ea5eb353 Author: Alan Garny '' Date: Thu Jan 13 23:48:22 2011 +0000 Prevent the text selection of any web page. commit 0e66b340070c0db90f3c19a910d563cf482a0086 Author: Alan Garny '' Date: Thu Jan 13 23:41:34 2011 +0000 'Argh!' commit fdc1e3dbb92ad57269dd8f86e21219abc2fea304 Author: Alan Garny '' Date: Thu Jan 13 23:40:52 2011 +0000 Renamed the known_issues.html file to knownIssues.html. commit 632f04ea669656047b347014e7e273a99f5620e3 Author: Alan Garny '' Date: Thu Jan 13 19:48:52 2011 +0000 Made the backward and forward buttons enabled/disabled whenever required. Consistency of code. commit 9237770a18e8ad3c856392668bb06c8d6f9c2b3e Author: Alan Garny '' Date: Thu Jan 13 19:14:35 2011 +0000 Added a couple of new icons '(backward' and 'forward)' that are used in the help window. Replaced the homepage icon. Updated the help window with the aforementioned buttons. Need to enable/disable them depending on the history of the help browser. commit f6b8bf23ca1010cd9e367fd7c44dde350d36703c Author: Alan Garny '' Date: Thu Jan 13 18:37:31 2011 +0000 Working on the GUI of the help window. commit 7f7086ef6a63b5171dd63910efa8e3fc56cbae37 Author: Alan Garny '' Date: Thu Jan 13 16:56:37 2011 +0000 A column which should have been part of what needs translating '(since' in some languages, a space is expected before a 'column).' commit bd90a738fe56777ffa52288b37ef09b7de1849c2 Author: Alan Garny '' Date: Thu Jan 13 16:45:36 2011 +0000 Updated the known issues help page. commit 7942c6b290020d2475babecefa897480c48b3d46 Author: Alan Garny '' Date: Thu Jan 13 16:39:55 2011 +0000 Renamed license to licensing wherever appropriate, since we may end up distributing OpenCOR under more than just one license. commit b5bdfaadc13cf0a37e596560bb673999f663e90d Author: Alan Garny '' Date: Thu Jan 13 16:32:08 2011 +0000 Can now open external pages within the help window. commit 69bd98ecc62b22be8b5c2eb55ab3d9da11d7ea88 Author: Alan Garny '' Date: Thu Jan 13 15:57:58 2011 +0000 Added a '"known' 'issues"' help page. commit 7243abb1fe730a84f5be94d596236b928a2d189e Author: Alan Garny '' Date: Thu Jan 13 14:57:17 2011 +0000 Fixed a Qt '(?)' problem with the web history in the help widget. commit 186e6ed57750ecb760758421371de568195567a0 Author: Alan Garny '' Date: Thu Jan 13 13:58:24 2011 +0000 Removed the call to 'setUnifiedTitleAndToolBarOnMac(true)' on Mac OS X, since that resulted in the dimensions of OpenCOR not being properly remembered '(!!).' Improved the help window by adding offering a way to go back to the homepage. Also implemented a resetAll function. commit f45200ce8ff001c71c1be3ae27bc2b1cea357a81 Author: Alan Garny '' Date: Thu Jan 13 12:56:59 2011 +0000 Support further means of navigation within the help widget. commit e7feca925f06d9c4032acbbd79dcc059b1931a58 Author: Alan Garny '' Date: Thu Jan 13 12:19:13 2011 +0000 Modified the source code to use my coding convention when it comes to the naming of variables. Basically, any parameter passed to a function must have the form pMyVariable, while any class member property '(!?)' must have the form mMyVariable, any global variable '(!!' None so far 'though!)' gMyVariable, and and local variable myVariable. Oops, missed a couple of 'files!' '(!?)' commit 27a30312501536cf4435bca7983bf9afeae150f4 Author: Alan Garny '' Date: Thu Jan 13 12:18:02 2011 +0000 Modified the source code to use my coding convention when it comes to the naming of variables. Basically, any parameter passed to a function must have the form pMyVariable, while any class member property '(!?)' must have the form mMyVariable, any global variable '(!!' None so far 'though!)' gMyVariable, and and local variable myVariable. commit 3078a303ef8395d04b687bf5a99cede4ec1d3d4b Author: Alan Garny '' Date: Thu Jan 13 11:22:05 2011 +0000 Some cleaning up. Added an error page for the help '(it' ought never to be seen, but one never knows, 'so...).' commit c6547c08c2c3a0e773dc746c42606a1b527c5437 Author: Alan Garny '' Date: Wed Jan 12 19:03:57 2011 +0000 Cleaned up the help viewer. Will most likely put back some features '(e.g.' determine whether the backward/forward action is 'enabled).' Also need to allow for external URLs to be loaded within the help viewer '(the' original code would load such URLs in the 'user'\''s' default web 'browser).' commit 77bb71acffa6c385da5097b3e0383ab09a810ba4 Author: Alan Garny '' Date: Wed Jan 12 15:50:28 2011 +0000 Some cleaning up. commit 3872eded6a333e43f32a1b4078ccf01f574af957 Author: Alan Garny '' Date: Wed Jan 12 14:45:27 2011 +0000 Some cleaning up. commit 5c7ac7b58d6362d5b303e1ccdaafad2529eac4ab Author: Alan Garny '' Date: Wed Jan 12 14:24:37 2011 +0000 Some more cleaning up. commit 656f1762d544462cf2a5c86c58cd64018af98372 Author: Alan Garny '' Date: Wed Jan 12 14:05:18 2011 +0000 Some cleaning up. commit f9035af28005fb64485cb1e68d2ecd3b53a5283a Author: Alan Garny '' Date: Wed Jan 12 12:36:06 2011 +0000 Improved the help system. commit c78a08e3aff697c16ed361d86aaa93ba4a7762f8 Author: Alan Garny '' Date: Tue Jan 11 15:17:02 2011 +0000 Added the correspind viewHelp shell script for Linux / Mac OS X. commit 250468f45f2f05e577fb8adb63d5a840fafea4cd Author: Alan Garny '' Date: Tue Jan 11 15:15:39 2011 +0000 Added batch file to view the help using Qt Assistant '(useful' for testing the help 'file).' commit daf95a641027e71bd9a4ee4b008740af15f37f47 Author: Alan Garny '' Date: Mon Jan 10 19:58:07 2011 +0000 Make the application look more like a Mac OS X application on Mac OX S. commit 4e27c1d34b741b4978be49f8666858a9b54c3eb2 Author: Alan Garny '' Date: Mon Jan 10 19:10:17 2011 +0000 Improved the reset all feature. commit 5dfdfba861ebdaec678f80ce2b74b4730e5edf27 Author: Alan Garny '' Date: Mon Jan 10 18:58:09 2011 +0000 Added a help toolbar. Made the code a bit more Qt-like by making use of signals/slots wherever possible. Some cleaning up. commit f9b0738f5208940c05debf999f2f509616ec831e Author: Alan Garny '' Date: Sat Jan 8 20:53:14 2011 +0000 Removed the Debian packaging for Linux. Indeed, there 'doesn'\''t' seem to be 'a(n' 'easy)' way to get a working Debian package out of our current packaging script. Thus, if Debian packaging was allowed, we would for example try to install the qt.conf file under /usr/bin and the readme file under /usr, which is clearly not desired. I guess we could always create a specific CPack script for Debian packaging, but probably not worth it. Also, this would ''\''break'\''' the nice generic solution that we have a the moment '(i.e.' everything within 'CMakeLists.txt),' so... commit 8eb1b122a6498232e30742f93e78b2de44f69229 Author: Alan Garny '' Date: Sat Jan 8 20:12:41 2011 +0000 Updated the deployment script for Linux. commit 1107bdc9af8109a77ee21c190964c73647ad73f7 Author: Alan Garny '' Date: Sat Jan 8 18:56:02 2011 +0000 Removed some Linux-specific code which 'isn'\''t' required in the end '(and' thank god for that, since it was a rather ugly 'hack!).' commit cdccb90e42723f0532d292d3660e1717b32bd3a9 Author: Alan Garny '' Date: Sat Jan 8 17:59:34 2011 +0000 Fixed a small problem which prevented the settings of the help window, when docked, from being properly saved. commit 6af7737984a4574d0684533f0916a905954caf49 Author: Alan Garny '' Date: Sat Jan 8 15:47:40 2011 +0000 Some cleaning up of code. commit 5a3e008f4dfecc898e1f50a9895893b1e4baa092 Author: Alan Garny '' Date: Sat Jan 8 03:49:20 2011 +0000 Removed the macdeployqt call in the build shell script, since it really ought to be done as part of the make process. So, this is where it now is, together with adding libsqlite.dylib to the bundle, thus ensuring that the help can be seen properly. Note: when building and running OpenCOR from within Qt Creator, we get 3 messages like: '~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' QObject::moveToThread: Current thread '(0x102b01880)' is not the 'object'\''s' thread '(0x102a29b60).' Cannot move to target thread '(0x102b01880)' On Mac OS X, you might be loading two sets of Qt binaries into the same process. Check that all plugins are compiled against the right Qt binaries. Export DYLD_PRINT_LIBRARIES=1 and check that only one set of binaries are being loaded. '~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' I have checked and 'couldn'\''t' see any library that is loaded twice. Not sure about the version of the Qt libraries though, but then again they are automatically added by macdeployqt and libqsqlite.dylib is also unique and from Qt, 'so...?!' commit 3f4e4a5eb76656916bc497662a6548fc36f29f85 Author: Alan Garny '' Date: Sat Jan 8 00:50:53 2011 +0000 Added the QSqlLite DLL which is also required on Windows to get the help to work fine. commit 7a9f2f765bf7194c9850765a150f3617639aade8 Author: Alan Garny '' Date: Fri Jan 7 18:36:17 2011 +0000 Working on the Windows deployment. For some reason QtHelpd4.dll '(and,' as a result, a few other Qt 'DLLs)' is required while a release version of other Qt DLLs is required '(e.g.' QtCore4.dll, 'QtGui4.dll).' 'Why?!' Otherwise, the SQL drivers are not currently deployed, but this clearly needs to be done '(from' past 'experience).' commit 746c89e15e7f9a08e99749f46aaaaca16d62af11 Merge: 6c7c39057 faeaf637f Author: Alan Garny '' Date: Fri Jan 7 16:48:05 2011 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 6c7c39057bcf5085f22b994711669ec422806295 Author: Alan Garny '' Date: Fri Jan 7 16:45:17 2011 +0000 Hide the help window straightaway before setting it up, thus avoiding that it shows up for a microsecond '(so' to 'speak!).' commit faeaf637ffbc5302c83d960be60343cf5f981ac6 Author: Alan Garny '' Date: Fri Jan 7 16:07:39 2011 +0000 Minor rewording. commit c54c2d2d81e7a0f76cf3f3a5e3ddd427d59af0df Author: Alan Garny '' Date: Fri Jan 7 11:59:52 2011 +0000 Fixed a small issue, on Linux, which showed a blank window in place of the help window when this one was supposed to be hidden upon starting OpenCOR. commit 9b9c0a0091ae68e801bce517b65f6d603f04cf18 Author: Alan Garny '' Date: Fri Jan 7 11:39:40 2011 +0000 Updated the reset all method to match what is also done in loadSettings. commit 373ab1ccbc1a9c5411c3f137369a4e7c054646f1 Author: Alan Garny '' Date: Fri Jan 7 11:23:34 2011 +0000 Added a means by which the user can reset all its user settings. commit f84cae2a5bcae16ee640d518e40be1367db0e2b6 Author: Alan Garny '' Date: Fri Jan 7 10:42:42 2011 +0000 Some trivial refactoring. commit c1ecef07f821114487e349986235489826539cc6 Author: Alan Garny '' Date: Fri Jan 7 10:34:42 2011 +0000 Minor reformatting. commit 51f94699ff98ec519def1c2f7d09b6d0b08810ad Author: Alan Garny '' Date: Fri Jan 7 10:20:25 2011 +0000 Generate the help files from within CMake, as opposed to from within the help batch/shell file/script. This allows for OpenCOR to be buildable from both the command line and from within Qt Creator. commit c57a703a53a563c03d24d9effb590c8cde34f7a6 Author: Alan Garny '' Date: Fri Jan 7 00:26:23 2011 +0000 Minor rewording of some text. commit cee3c665117e78de4f8031b99cd1c61977f6e908 Author: Alan Garny '' Date: Thu Jan 6 21:23:03 2011 +0000 Removed the About Qt menu item '(don'\''t' like it in the 'end!).' commit 8c54566aaebc019f7749425c0ef9fcd4d4514450 Author: Alan Garny '' Date: Thu Jan 6 20:32:40 2011 +0000 Argh, I take it back. It seems '(will' find out once I have committed from Windows and pulled things on Mac OS X to 'test)' that the help files need to be built on each platform. As a consequence, we 'don'\''t' version control the generated .qch and .qhc files, and instead generate them in the build folder. This also means we can get rid, once again, of the help batch/shell file/script 'files!' commit 76b911bf650b1fc422bc2ce9716540ced1839114 Author: Alan Garny '' Date: Thu Jan 6 20:17:58 2011 +0000 Changed the x permission of the help script. commit d7457a3dc687907fa4704ed0baffba1dd5ab334b Author: Alan Garny '' Date: Thu Jan 6 20:13:17 2011 +0000 Various cleaning ups of the code. Otherwise, decided not to rely on Qt Assistant '(couldn'\''t' find any ''\''proper'\''' documentation on how to deploy it effectively on all three 'platforms;' note: the current solution 'doesn'\''t' deploy for now, but I know how to do 'that).' Instead, have our own help viewer. So, implemented a skeleton of what will be our future help viewer. In the process, recreated the help batch/shell file/script, since there 'shouldn'\''t' be a need to rebuild the help everytime we need to build a Qt application '(from' past 'experience).' commit 50589075bd432041a141a2035c02be854aedbf27 Author: Alan Garny '' Date: Thu Jan 6 12:56:36 2011 +0000 Set the application icon on all three platforms. Added an about Qt menu item. commit 5cf46514f3b45f793e00440e88d6544684ad59b8 Author: Alan Garny '' Date: Wed Jan 5 12:47:47 2011 +0000 The choice of the right license for OpenCOR needs further thinking, so remove any direct reference to a specific license. Merged the help and buildall batch/shell files/scripts '(the' help file needs building every 'time!).' Fixed a small issue in the Assistant class. commit e8b21e6f0e0d80b80e0b3eb80fb82ffaa5005bfa Author: Alan Garny '' Date: Tue Jan 4 17:32:32 2011 +0000 Whatever I did in a previous commit required rebuilding the help file, so... commit fb056de35d6472cb350582f3e12fce3d2ce6ea4d Author: Alan Garny '' Date: Tue Jan 4 17:23:31 2011 +0000 Cleaned up the CMakeLists.txt files. commit 2f5cf983ce31cb4229a7c4af35e2b1e3a56992bf Author: Alan Garny '' Date: Tue Jan 4 16:19:08 2011 +0000 Cleaned up the CMakeLists.txt files. commit 16c09b1d13b59bb7bcf4acd1ba001701a40e042c Author: Alan Garny '' Date: Tue Jan 4 15:54:23 2011 +0000 Made Qt 4.6 the minimum requirement for building OpenCOR '(check' BUILD.txt for more 'information).' Fixed a small problem with the name of the application '(OpenCOR' instead of 'OpenCell).' commit ebbf8e5ade135720662a1cf7df729e869474be9c Author: Alan Garny '' Date: Sun Jan 2 21:25:55 2011 +0000 Changed the license from LGPLv2.1 to GPLv2 '(or' 'later),' since OpenCOR is not a library but an application, and it seems to me that this would be a more suitable license for OpenCOR. commit eadea357b470ca8f203d651f6478c84303d682b0 Author: Alan Garny '' Date: Sun Jan 2 16:11:24 2011 +0000 Got the CMake/CPack side of things to work fine with QtSingleApplication library on Mac OS X. commit bf006c05fbd4e7799f7e4c0428926b0a3749c9e7 Author: Alan Garny '' Date: Sun Jan 2 15:25:45 2011 +0000 Renamed qtsingleapplication to QtSingleApplication. commit 592f728886104e12317f7395e551d0cee537c548 Author: Alan Garny '' Date: Sun Jan 2 14:54:17 2011 +0000 Decided to revert to a shared version of QtSingleApplication. Need to finish things on Mac OS X though. commit affe68c0fa0f778393bcd4e801707a08470e3b22 Author: Alan Garny '' Date: Sat Jan 1 17:55:33 2011 +0000 Connected OpenCOR to its help file '(using' Qt Assistant which needs to be packaged along 'OpenCOR).' commit 19866124a72b9de5c04712de4391748e1b5478ad Author: Alan Garny '' Date: Sat Jan 1 16:37:32 2011 +0000 Extract the help files upon starting OpenCOR '(and' delete them upon leaving 'OpenCOR).' commit 304de75d506943c0ade89c5e838c971da6dc304f Author: Alan Garny '' Date: Sat Jan 1 16:30:19 2011 +0000 Added the Assistant class '(from' a Qt 'example),' so that we can nicely display the help '(not' done yet 'though).' commit 4501a9236bcf81fefe1531b0711a57e6f0340674 Author: Alan Garny '' Date: Sat Jan 1 16:16:39 2011 +0000 Moved a few files around. commit fdc880d2785b7782077f3d9949fda85b71663be4 Author: Alan Garny '' Date: Sat Jan 1 13:33:08 2011 +0000 Changed the x right access on the help shell script. commit 9ffe068e48ca6aec36c6ceb0f79aae2f0a78d0b2 Author: Alan Garny '' Date: Sat Jan 1 13:30:49 2011 +0000 Added a basic help file '(not' connected to OpenCOR 'yet).' commit abfb8d2c85401b2387d7e32cd1251b1be1d67edb Author: Alan Garny '' Date: Fri Dec 31 16:49:07 2010 +0000 Take advantage of VERSION.txt in CMake, i.e. within CMakeLists.txt. Reminder: this is a ''\''trick'\''' to get access to the version information with OpenCOR itself, since VERSION.txt is used as a resource within OpenCOR. commit aa6231df56744d92bc2cec502f1f6aa0f6e06b0e Author: Alan Garny '' Date: Fri Dec 31 13:51:04 2010 +0000 Fixed a problem that got introduced as part of some refactoring. commit ecb73a3208971996519ef292a328e4e48d8b3a12 Author: Alan Garny '' Date: Fri Dec 31 13:41:35 2010 +0000 Cross-platform development. Argh, missed something for Mac OS 'X!' commit f62f8ed681ad16fa4d147089b0844305be051139 Author: Alan Garny '' Date: Fri Dec 31 13:26:53 2010 +0000 Argh with '#ifdef' '&' Co. commit 29e936371e2f7179ab12903189fef26fd5368f50 Author: Alan Garny '' Date: Fri Dec 31 13:18:23 2010 +0000 'Oops!' Renamed execProg, but not 'everywhere!' commit 99fe5dbea6cf4254fb14581f697f33a8434bee19 Author: Alan Garny '' Date: Fri Dec 31 13:16:29 2010 +0000 Updated the about box. Retrieved the ''\''correct'\''' application name and version information. Also retrieve the operating system information. Some refactoring. commit 8dfb239e353ce24bbacb44fcd03f039e7b1f54b9 Author: Alan Garny '' Date: Thu Dec 30 21:54:05 2010 +0000 Added a Debian packaging '(for' 'Linux).' commit 1628cb3796479ecb51c792fac19175e82f390ad0 Author: Alan Garny '' Date: Thu Dec 30 21:11:04 2010 +0000 Added a handler for the about box menu item. commit 2fb499878cb43a2b01d2710dffd8b3b15f29d0a5 Author: Alan Garny '' Date: Thu Dec 30 20:30:33 2010 +0000 Retrieve and keep track of the geometry of OpenCOR and locale used. Added/replaced some icons. commit ab7851103e810a625039e475dd1238bd477f32ac Author: Alan Garny '' Date: Thu Dec 30 17:49:56 2010 +0000 Some more work on the current menu and added some handlers. commit 40033999c12c3145e6fa02f426cc17c6247ad302 Author: Alan Garny '' Date: Thu Dec 30 17:26:19 2010 +0000 The iconVisibleInMenu property '(for' menu 'items)' is set by default on Windows and Mac OS X, but not Linux, so... commit 6f0922405fd282a73be15b12814649c9fb9cad1c Author: Alan Garny '' Date: Thu Dec 30 17:21:06 2010 +0000 Added an icon to some menu items. commit 7eada045316084ea4cb91be773b8e997225f3b8f Author: Alan Garny '' Date: Thu Dec 30 17:01:23 2010 +0000 Started work on the GUI with a non-functional menu. commit ec3c9e7dd787af8b9c6ffdc605eebc3cff77f35f Author: Alan Garny '' Date: Thu Dec 30 16:30:18 2010 +0000 Argh, I had to test the existence of OpenCOR as a directory on Mac OS X, not as a file. commit 023f2eeb8ac51f76203106643f566182e41daec3 Author: Alan Garny '' Date: Thu Dec 30 16:26:17 2010 +0000 Updated the run shell script to add a warning message in case OpenCOR 'hasn'\''t' been built. commit 18d4e4e01a0531cd58622cabff1f7285ce1ca344 Merge: e74b9a35a 28b58f024 Author: Alan Garny '' Date: Thu Dec 30 13:13:26 2010 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor Conflicts: 3rdparty/qtsingleapplication/CMakeLists.txt CMakeLists.txt commit e74b9a35ad5495c1ba86df850c83510068a4f9d5 Author: Alan Garny '' Date: Thu Dec 30 13:03:40 2010 +0000 Forgot to add QtNetwork to the packaging rules. commit 4e1c4f1270dcbfeb3a1ccb1adfec3d46c2396e6b Author: Alan Garny '' Date: Wed Dec 29 23:41:33 2010 +0000 Now build QtSingleApplication statically. commit 28b58f0241cbfa0f56b1acd94ec58d3fbe53cbce Author: Alan Garny '' Date: Wed Dec 29 23:41:33 2010 +0000 Some cleaning up. commit 2d375df938be0e042d88f35c1396d7aa8c01ffdd Author: Alan Garny '' Date: Wed Dec 29 23:24:32 2010 +0000 Got QtSingleApplication to work on Windows, but as a shared library while it would be better to have it working as a static library. Also, the only way to currently get OpenCOR to work is by packaging it, since the DLL is not generated in the same folder as OpenCOR.exe. commit a095908fd2ac912c19ea737923a53ce204a22241 Author: Alan Garny '' Date: Wed Dec 29 18:02:21 2010 +0000 '#include' '' rather than '#include' '' commit 37a1f759a0b5873d7cd5ce1c2a753ce3b465beb3 Author: Alan Garny '' Date: Wed Dec 29 17:51:54 2010 +0000 Removed 'qtsinglecoreapplication.*' from QtSingleApplication, since 'it'\''s' not required. Also applied the patch which is required to get QtSingleApplication to work. Note that the original code works fine with the '(QMake)' examples provided with the QtSingleApplication package, but not with our 'code...?!' No time '(and' 'point)' in trying to figure out why this is the case. Other Qt/CMake projects have done something similar to us, so... commit df38ece470d683eced9a9f9b0218cdc7383a4704 Author: Alan Garny '' Date: Wed Dec 29 15:02:12 2010 +0000 For correctness, put back the '(current)' official version of QtSingleApplication '(http://qt.gitorious.org/qt-solutions).' The idea is to generate a patch/diff file '(to' be added to the QtSingleApplication 'folder),' since the official version 'doesn'\''t' work with Qt 4.7. commit e84f4f27d79e853be60a704a17a9dd10ad6e39f5 Author: Alan Garny '' Date: Wed Dec 29 13:24:04 2010 +0000 Updated the cleanall batch/shell script '(forgot' to account for the renaming of extra to '3rdparty).' Added some code to handle the activation of an existing instance of OpenCOR. commit 9643c270fe0be9c4fdaae8a11aa283007479c385 Author: Alan Garny '' Date: Wed Dec 29 01:00:31 2010 +0000 Renamed the extra directory to 3rparty which makes more sense considering 'it'\''s' for third-party libraries. commit 52d89fb2a7055e6b952ad20dfab044afda588574 Author: Alan Garny '' Date: Wed Dec 29 00:57:09 2010 +0000 Reverted a change to buildall.bat that mistakenly got committed. commit 6ca3f8b2a8b690a3919170bd8340a362b34ca44f Author: Alan Garny '' Date: Wed Dec 29 00:52:42 2010 +0000 Modified parts of QtSingleApplication to get it to compile fine. Added a readme file for the third-party libraries. Updated OpenCOR to support only one instance at a time. Note: the updated CMake project 'doesn'\''t' currently allow for OpenCOR to build... commit 5160106d9d60ea95748e044b7f740b6391e5177b Author: Alan Garny '' Date: Tue Dec 28 23:05:36 2010 +0000 Fixed a copy/paste problem in the CMakeLists.txt file for QtSingleApplication. commit dd4703b327261816f5d5caf53be6e05d8663b00b Author: Alan Garny '' Date: Tue Dec 28 21:37:40 2010 +0000 Added the QtSingleApplication source code which comes from http://qt.gitorious.org/qt-solutions. commit a6a886fd29ccdfa11822780b322f01b83dd8d283 Author: Alan Garny '' Date: Tue Dec 28 18:06:16 2010 +0000 Some reformatting and cleaning up. Added an application icon for Windows and Linux '(it' was already done for 'Mac).' Set the title of the main window to OpenCOR. commit b3d6828624490334a83eb12f01e54e579eb3fbc6 Author: Alan Garny '' Date: Tue Dec 28 16:49:21 2010 +0000 Some reformatting. commit e05c8028b0670b33b1f08a06b703ff47ae191473 Author: Alan Garny '' Date: Tue Dec 28 16:44:34 2010 +0000 Updated the build information. commit 86d2b721d24bf03a330bcc2e7e6ee29e89f6d551 Author: Alan Garny '' Date: Mon Dec 27 17:52:50 2010 +0000 Updated the Linux packaging, which was missing some libraries. commit 03172eb3652f7f6eb2fc67cb59832c4c513a1b99 Author: Alan Garny '' Date: Sun Dec 26 21:20:14 2010 +0000 Argh, when working on the packaging for the Mac OS X version, I removed the license information for the Windows version of the packaging. commit b97a402cb3c4be11b03daf85d169594cf303080d Author: Alan Garny '' Date: Sun Dec 26 21:06:50 2010 +0000 Oops, forgot something the OpenCOR shell script that needs distributing in the case of Linux and Mac OS X. commit c978ab7fa9e52792756dafdd689230261947d2cc Author: Alan Garny '' Date: Sun Dec 26 21:02:23 2010 +0000 Added ZIP packaging for Windows and Mac OS X. Replaced run.bat with run.vbs, i.e. a VBScript file which allows us to run OpenCOR without the Command Prompt window. commit f4da68d739518b9821724c0626c3a0c9b2b8f5c9 Author: Alan Garny '' Date: Sun Dec 26 17:13:08 2010 +0000 Some cleaning up. commit 3b59e784086ecb24c3f5044d8fbe5f79aef5d7a3 Author: Alan Garny '' Date: Sun Dec 26 17:12:04 2010 +0000 Updated the buildall shell script to ensure that OpenCOR can work on a Mac OS X machine that 'doesn'\''t' have Qt. commit eabc708b48730afe64d7f52ca3befc1774135f17 Author: Alan Garny '' Date: Sun Dec 26 16:39:22 2010 +0000 Updated the Mac OS X specific packaging information '(can' now generate a meaningful 'installer).' Updated the readme and '(Mac' OS 'X)' welcome messages. commit cbf47f534ef84aebe8de89cc02601a0ef5137829 Author: Alan Garny '' Date: Sun Dec 26 15:26:00 2010 +0000 Updated the Mac OS X specific packaging script. commit 55c3e561518e8c96b0a4aa69bd4912b85380b287 Author: Alan Garny '' Date: Fri Dec 24 15:34:27 2010 +0000 Slight improvement to the packaging code. commit a1c8c6c4993ab341226f9e4725e483d03f1923fa Author: Alan Garny '' Date: Fri Dec 24 10:54:10 2010 +0000 Revert '"Minor' fix for the Linux 'packaging."' This reverts commit 9f16a9e42683b04d6dc0ec0bf697f6055c7d5b4d. Indeed, the change that was introduced prevented the shell script from working when double clicking on it. commit 58dd2311f27efd62dae2fdf473c23aadf59532dd Author: Alan Garny '' Date: Fri Dec 24 10:49:10 2010 +0000 Minor fix for the Linux packaging. commit e79fe8d74fd20f72d256153007df2330c44eb2b4 Author: Alan Garny '' Date: Fri Dec 24 10:38:39 2010 +0000 Minor fix for the Windows packaging. commit 761fe94d64842736a7fb7f40653fe035b6007fc5 Author: Alan Garny '' Date: Thu Dec 23 21:03:49 2010 +0000 Updated the build information. commit 02ea4a5e0a2901589d55bbf539be36aca23e28f7 Author: Alan Garny '' Date: Thu Dec 23 20:08:15 2010 +0000 Improved the compiler options. commit 68a09e05a8e88b8dd948123aafb6e292ca387281 Author: Alan Garny '' Date: Thu Dec 23 10:12:17 2010 +0000 Set the the permissions of the Linux shell script right. commit ef0cfcf29dd839cf3331baa3073773d97821b871 Author: Alan Garny '' Date: Thu Dec 23 09:59:25 2010 +0000 Updated the x bit of the shell script distrib/OpenCOR. commit fc23c74272c5f196fc310af96b7dabce24b528bb Author: Alan Garny '' Date: Thu Dec 23 09:55:22 2010 +0000 Added the Linux shell script to run an installed version of OpenCOR. commit e04aaecf75f83294f4c0299fdeab40db4e082c96 Author: Alan Garny '' Date: Wed Dec 22 22:32:28 2010 +0000 Cleaned up CMakeLists.txt and added a few files for packaging. commit 86f82dc96efa3add6c6832f3d91f528a5e791ee8 Author: Alan Garny '' Date: Wed Dec 22 22:02:29 2010 +0000 Updated CMakeLists.txt as part of the work on packaging OpenCOR. commit 6205ef89d2301c0ad3870161fb64d72a27330112 Author: Alan Garny '' Date: Wed Dec 22 17:56:24 2010 +0000 Select the packager in a different way '(my' currently limited knowledge of cmake/cpack means that the way I tried to set CPACK_BINARY_NSIS '&' Co. 'doesn'\''t' do the job, 'so...).' Updated the build information. commit c4eb8316297701178ed9f68769fe000ffc2b5a2d Author: Alan Garny '' Date: Wed Dec 22 15:31:17 2010 +0000 Changed the Linux packaging from RPM to .stgz. Updated the build documentation. commit c7b4fec50314519ab91f12aca559677db6f4da2b Author: Alan Garny '' Date: Wed Dec 22 14:50:28 2010 +0000 Oops, forgot to remove something in CMakeLists.txt. commit f7ca22f007702301f02145b109d3030bd819ca07 Author: Alan Garny '' Date: Wed Dec 22 14:33:55 2010 +0000 Cleaned up the CMakeLists.txt file and '(hopefully)' selected the right packagers for the various platforms. commit c7972c2f9a148e05a6a1070540652024b0d9910b Author: Alan Garny '' Date: Wed Dec 22 14:17:56 2010 +0000 Cleaned up and updated some shell scripts. commit cb2245de6b18b9528228b7109e4b09176cea47c1 Author: Alan Garny '' Date: Wed Dec 22 13:58:56 2010 +0000 Done with packaging on Windows. commit f320d59b55b9bb67c4054ae67ba0a4b5f4e4a695 Author: Alan Garny '' Date: Wed Dec 22 10:50:28 2010 +0000 Started work on packaging rules. commit 2003755eebcbef216eff74e1e728e5bee56a345d Author: Alan Garny '' Date: Wed Dec 22 10:39:09 2010 +0000 Minor reformatting of CMakeLists.txt. commit 17607bbf59590b96b7b057ddf6c24391f80127e0 Merge: 1dda43f6b bd052e49f Author: Alan Garny '' Date: Wed Dec 22 10:33:32 2010 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit 1dda43f6b7f494bc86b08abb9ad96c09f7e949fc Author: Alan Garny '' Date: Wed Dec 22 10:31:18 2010 +0000 Updated CMakeLists.txt so that the application icon gets set up '(on' Mac OS X to start 'with).' commit 0b70d9d0edd2886d3b87bdd02e16932f3cb0157f Author: Alan Garny '' Date: Wed Dec 22 10:24:24 2010 +0000 Added an application icon. It is most likely going to be a temporary one, but it 'doesn'\''t' matter. 'It'\''s' just to get things set up at this stage. commit 2eca6504941fa0baae7d02d35c8e9c4017a06d70 Author: Alan Garny '' Date: Wed Dec 22 10:14:13 2010 +0000 Updadted the formatting and slightly improved CMakeLists.txt. commit bd052e49fee6ef8d40b715af137c1dcb7f5ac42d Author: Alan Garny '' Date: Tue Dec 21 23:10:53 2010 +0000 Added the shell equivalent of the packageall batch file. Cleaned up some files. commit 33e887df23de3cc728c802708ce147c3ff3ddb6a Author: Alan Garny '' Date: Tue Dec 21 22:58:24 2010 +0000 Tested things on Ubuntu 10.10 64-bit and therefore updated the documentation accordingly. Also various minor updates/improvements to text and batch files. Added a batch file that will be used for packaging OpenCOR. commit ab83758a82dc861b55f222e00c8fa6a38d359be4 Merge: c06b42253 cdc090d66 Author: Alan Garny '' Date: Tue Dec 21 16:12:48 2010 +0000 Merge branch ''\''master'\''' of ssh://opencor.git.sourceforge.net/gitroot/opencor/opencor commit c06b42253f2b958182e422094785155e71980dcc Author: Alan Garny '' Date: Tue Dec 21 16:11:56 2010 +0000 Updated the cleanall batch file. commit cdc090d66bd47bc46fdccff242c703d2b89b2bdb Author: Alan Garny '' Date: Tue Dec 21 16:11:05 2010 +0000 Updated the cleanall shell script. commit 17f5e7dd6c0ae52e7602710d9346789af98402af Author: Alan Garny '' Date: Tue Dec 21 14:19:42 2010 +0000 Updated the CMakeLists.txt, buildall and run files to get things to work on Mac OS X. commit 6e305af7c94986862522c88143474e880d696183 Author: Alan Garny '' Date: Mon Dec 20 22:28:54 2010 +0000 Updated the build file. commit 80946078386fb01765c453b5b8362589d7ec7aa9 Author: Alan Garny '' Date: Mon Dec 20 22:24:31 2010 +0000 Updated the cleanall shell script. commit 48fd5da1ba52b8aa3cecf137eef9e628e23f0efb Author: Alan Garny '' Date: Mon Dec 20 20:20:04 2010 +0000 Added CMakeLists.txt.user to the ignore list. commit bdf7333ef74cdab78597bcde203e2ae5fb23a547 Author: Alan Garny '' Date: Mon Dec 20 20:03:50 2010 +0000 Updated the build file. Updated the casing in CMakeLists.txt. commit 68d5cbd363eee194f2a0e3e762b9c9bf1be74e50 Author: Alan Garny '' Date: Mon Dec 20 10:58:23 2010 +0000 Added shell files for Linux to build, run and clean the OpenCOR environment. commit 4789544efb49bb4806307d76efeb0f68589b0558 Author: Alan Garny '' Date: Mon Dec 20 10:55:06 2010 +0000 Minor update to the cleanall batch file. commit 7c7dd97080da87b917e03e5f7c5851171c76c8e0 Author: Alan Garny '' Date: Mon Dec 20 10:38:19 2010 +0000 Renamed some batch files. commit c97ce8b98f865af7ae63c1a9e39ae17e20cc2452 Author: Alan Garny '' Date: Sun Dec 19 21:15:11 2010 +0000 Updated the build and clean batch files. commit ac3dfb2b494f938c452ad8fcd9bc86ef58159574 Author: Alan Garny '' Date: Sun Dec 19 21:00:37 2010 +0000 Added a few batch files to clean, build and run OpenCOR. Updated the build file. commit 833adb61dd67920ab90c1b03701d6f0f054fb298 Author: Alan Garny '' Date: Fri Dec 17 14:44:58 2010 +0000 Trivial changes to the CMake lists file. commit eb9000bdb2009188eb53b7c574b6dfb2c7a52d21 Author: Alan Garny '' Date: Thu Dec 16 17:39:32 2010 +0000 Updated the build file. commit 3fc700fd6229d8c33ad3d30df9fbd64c6f060892 Author: Alan Garny '' Date: Thu Dec 16 17:33:54 2010 +0000 Updated the readme file. Added a minimal Qt project. Added a '(how' 'to)' build file. commit 074c779b715caeef3491481629a29fb10ac0b14f Author: Alan Garny '' Date: Thu Dec 16 17:08:22 2010 +0000 Added license information. commit d6f31f02f0782b559e3d61a3acc42452e97c676f Author: Alan Garny '' Date: Tue Dec 14 10:00:14 2010 +0000 Updated the readme file. commit 3fa09ba01d2dd0d4a28fe0e65e5a1fee5474d6ca Author: Alan Garny '' Date: Mon Dec 13 16:54:28 2010 +0000 Initial readme file. commit 73dc874228caa227f4a552084e75900f925d5ce4 Merge: 5a13167db 37ad4a231 Author: Alan Garny Date: Fri Oct 16 11:59:28 2020 +1300 Merge 37ad4a231f543cbb07cf454d49bf6e3632420ce6 into 5a13167dbd47e74e0941dbd65e6e387cff31c258 commit 37ad4a231f543cbb07cf454d49bf6e3632420ce6 Author: Alan Garny Date: Fri Oct 16 11:59:21 2020 +1300 Just for testing Jenkins [006]. commit 17ded538fdb481ca80e26056d4c8f7505a1d30d0 Author: Alan Garny Date: Fri Oct 16 11:57:48 2020 +1300 Just for testing Jenkins [005]. commit 237d70fe8d96fdc82d23459ae2e2e901ce7223d1 Author: Alan Garny Date: Fri Oct 16 11:48:34 2020 +1300 Just for testing Jenkins [004]. commit 3993aa16c22d2768eba371a0cfbc8072cd8f56a8 Author: Alan Garny Date: Fri Oct 16 11:41:40 2020 +1300 Just for testing Jenkins [003]. commit 52b8cc7a915916406b7e3fc9eaa8dd5e757f2d55 Author: Alan Garny Date: Fri Oct 16 11:39:35 2020 +1300 Just for testing Jenkins [002]. commit c2002a62634275f254e28f3af85dedc87c965fe8 Author: Alan Garny Date: Fri Oct 16 11:36:11 2020 +1300 Just for testing Jenkins [001]. commit 5a13167dbd47e74e0941dbd65e6e387cff31c258 Merge: d5b932fe7 b5bf6b18f Author: Alan Garny Date: Mon Oct 12 12:37:38 2020 +1300 SUNDIALS: upgrade to version 5.4.0 (#2407). commit b5bf6b18f0275e55126bfbfbb84ce8552ae51f06 Author: Alan Garny Date: Mon Oct 12 11:51:48 2020 +1300 Slight update to our downloads page (#2407). commit 32e93cc4562349ab8fdef026ed48da5b874c562d Author: Alan Garny Date: Mon Oct 12 11:49:41 2020 +1300 SUNDIALS: binaries for version 5.4 (#2407). commit 04cf919b20bfdb588fda9680f3c8e4c3001348c4 Author: Alan Garny Date: Mon Oct 12 11:40:08 2020 +1300 SUNDIALS: upgraded to version 5.4 (#2407). commit d5b932fe71c5c979f14dcd7c42c3b6ba69fe3a28 Merge: 9d89e203c 0344ecb5e Author: Alan Garny Date: Fri Sep 25 17:54:54 2020 +1200 Cleaning up. commit 0344ecb5e55d656fdb4293ccfd311e9b34645784 Author: Alan Garny Date: Fri Sep 25 16:57:49 2020 +1200 Some minor cleaning up. commit 91e17e07d9b1aacf40a89be5762f653b7846c958 Author: Alan Garny Date: Fri Sep 25 16:53:32 2020 +1200 Tool bar widget: enforce the use of a parent. commit fe7d19ee0009a64b42a879d989fab8feee39a231 Author: Alan Garny Date: Fri Sep 25 16:52:56 2020 +1200 Busy widget: changed the signature of its constructor. To be in line with what we do elsewhere. commit 9d89e203c8e423f62d72c66eb4f987af3f3635b0 Merge: d1457da1c 3959f2f25 Author: Alan Garny Date: Wed Sep 23 17:44:01 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target (closes #2402). Some third-party libraries haven't been updated since they were built under macOS 10.14. This means that whenever they get updated, they will be fine if they are being built using CMake, but not fine if they are built in a different way (e.g. with `configue`/`make`). So, we will need to update the building process for those third-party libraries so that we do something to what we have done for `src/plugins/thirdParty/OpenSSL/CMakeLists.txt` (i.e. use something like `-mmacosx-version-min=${CMAKE_OSX_DEPLOYMENT_TARGET}`). commit 3959f2f25adf4e756ecd51cfc2ffd3223eb75c0c Author: Alan Garny Date: Wed Sep 23 16:26:25 2020 +1200 macOS: updated some third-party binaries (#2402). commit 17ca4514c113f0df8fbf4fb26573776fd3f3c6bf Author: Alan Garny Date: Wed Sep 23 16:07:02 2020 +1200 macOS: updated some third-party binaries (#2402). commit 0d0617f7aab8fde667ad7e50e531165a0ba2905d Author: Alan Garny Date: Wed Sep 23 10:45:57 2020 +1200 macOS: build all our third-party libraries using our minium supported deployment target (#2402). commit d1457da1c5a2c61755b4fa45e978b8633de4bc6b Merge: d687dc464 abad678cf Author: Alan Garny Date: Wed Sep 23 10:33:23 2020 +1200 OpenSSL: upgrade to version 1.1.1h (closes #2399). commit abad678cf3bb41a0bdbc4d1382852622e35bf27b Author: Alan Garny Date: Wed Sep 23 09:36:42 2020 +1200 Slight update to our downloads page (#2399). commit 0fa55f091b7ceef41947fe588303eed085748540 Author: Alan Garny Date: Wed Sep 23 09:35:29 2020 +1200 OpenSSL: binaries for version 1.1.1h (#2399). commit bcc1c8a5ddd78c851b9c18fad7fdc1df3ce53f3d Author: Alan Garny Date: Wed Sep 23 09:14:18 2020 +1200 OpenSSL: upgraded to version 1.1.1h (#2399). commit d687dc464aa9e8efe9b5e3e491cf5e87b2dc8f71 Merge: 6e65d4d63 503456e76 Author: Alan Garny Date: Fri Aug 21 18:22:51 2020 +1200 Zinc widget: improved/fixed various things. commit 503456e7620abcff7297998136761358af9da5ff Author: Alan Garny Date: Fri Aug 21 16:49:23 2020 +1200 Zinc widget: fixed our reset() method. We didn't need to call QOpenGLWidget::context()->create() after all! commit 5f801ae305cb5d6283428617f99642ef20b6d2b4 Author: Alan Garny Date: Fri Aug 21 15:11:18 2020 +1200 Some minor cleaning up. commit 95eb294f305bd5357b3559fe302b3c3214cff44b Author: Alan Garny Date: Fri Aug 21 14:31:20 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. Don't use a timer after all... since we now have a call to `resizeEvent()` rather than a couple to `resize()`. commit d58a68448b10ef0bc7bf288ae5b6c8207581eb40 Author: Alan Garny Date: Fri Aug 21 14:18:15 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. commit 5f73676e0440fb2448021750e5c4bcbf5343e4b1 Author: Alan Garny Date: Fri Aug 21 12:17:23 2020 +1200 Zinc widget: reworked the way we handle a change in the device pixel ratio. Now use a timer to check for a change in the device pixel ratio value. Also did some minor cleaning up. commit 97d2ce7402892e6ecaef0d91fce92e6ab03fe20a Author: Alan Garny Date: Fri Aug 21 11:28:53 2020 +1200 Some minor cleaning up. commit d10bc711b1b2f1c692a0f0dd697f431d2ad0d0dc Author: Alan Garny Date: Fri Aug 21 11:00:02 2020 +1200 Zinc widget: added a way to retrieve the FPS. commit 6e65d4d63eeb3582bfa0343daf261a8b6a8f5605 Author: Alan Garny Date: Wed Aug 19 15:18:56 2020 +1200 Some minor cleaning up. commit 86010b4f03dd3c81b56c04721a89c1433e38220a Merge: 590e8894c 58891bae3 Author: Alan Garny Date: Wed Aug 19 15:14:14 2020 +1200 Improved Zinc support. commit 58891bae3f0bfe155a89b2bc114967703c9e484c Author: Alan Garny Date: Wed Aug 19 14:37:02 2020 +1200 Some minor cleaning up. commit 69f94ce9bdd34dc21eed7b33b03c3a19f54d88b8 Author: Alan Garny Date: Wed Aug 19 14:32:41 2020 +1200 Zinc window: various improvements. - Can show/hide axes, points, lines, surfaces and isosurfaces; and - Can load (an)other Zinc mesh file(s). commit cdb8213f8dcd896a6100ecec6be732593af50019 Author: Alan Garny Date: Wed Aug 19 14:31:26 2020 +1200 Zinc widget: various improvements. - Support for a context menu; - Default white background; - Support for resetting the widget; and - Improved support for high DPI. commit 590e8894c39282243535334d8f19850d5618c3dc Merge: 24f71e56b e52730b4e Author: Alan Garny Date: Tue Aug 18 17:37:59 2020 +1200 Some minor cleaning up. commit e52730b4e8c1504dddfa69d28891b31c8e1d982a Author: Alan Garny Date: Tue Aug 18 16:59:50 2020 +1200 Some minor cleaning up. commit 24f71e56b7e3645ee6c1e4189191072620f656db Merge: d2d08172e 7b64a430f Author: Alan Garny Date: Tue Aug 18 13:39:43 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit 7b64a430f2857dcefb41a765d904d84368f2e7cc Author: Alan Garny Date: Tue Aug 18 11:49:19 2020 +1200 Some minor cleaning up. commit 1fb2d0acfd0609e62e205774d0831f241a2874b5 Author: Alan Garny Date: Tue Aug 18 11:35:48 2020 +1200 Zinc window: automatically retrieve the coordinates field, independent of its name. commit d2d08172eb37edf72475a76f90d9300832c351f5 Author: Alan Garny Date: Mon Aug 17 13:03:02 2020 +1200 Some minor cleaning up. commit 3bfcf86430fe27d9f457c89497a14b28d6b124fc Author: Alan Garny Date: Fri Aug 14 18:10:17 2020 +1200 Some minor cleaning up. commit 0f08c4bccf3656dc2d94cbbba38e6d238918f9ea Merge: deb5b82e9 71a6078b8 Author: Alan Garny Date: Fri Aug 14 10:35:46 2020 +1200 Zinc: don't allocate our Zinc context on the heap. See the square-bracket comment at #2369 (comment). commit 71a6078b87656fbbd02287b69fefa8300d416c25 Author: Alan Garny Date: Fri Aug 14 09:58:25 2020 +1200 Zinc: don't allocate our Zinc context on the heap. See the square-bracket comment at https://github.com/opencor/opencor/issues/2369#issuecomment-673350896. commit deb5b82e906d5420f7be63d36fe7950c490375d3 Author: Alan Garny Date: Thu Aug 13 16:19:49 2020 +1200 Fixed a typo. commit 7c9fe2c27b8463311b2c11c87179035f1f6b989a Merge: 5993f9f14 dbebe3e58 Author: Alan Garny Date: Thu Aug 13 13:42:05 2020 +1200 Zinc window: some minor improvements. commit dbebe3e58cb8560b5167e6ac5520022f3ef2d2ba Author: Alan Garny Date: Thu Aug 13 12:21:14 2020 +1200 Zinc window: keep a temporary copy of our .exfile file. commit ee98ba2be7d0eb52aa6945855461c6de4206e695 Author: Alan Garny Date: Thu Aug 13 12:19:32 2020 +1200 Zinc window: skip createAndSetZincContext() when closing OpenCOR. commit 5993f9f144fc44d6819502209c3317b90003c57f Merge: 3295700d3 d6d67a04b Author: Alan Garny Date: Wed Aug 12 20:41:30 2020 +1200 Made Clang-Tidy happy. commit d6d67a04bf8d8440616bdb962526788d38417d5d Author: Alan Garny Date: Wed Aug 12 18:18:03 2020 +1200 Make Clang-Tidy happy. commit 8263da36185a70d15654f0fe63137ea0bdf4ecf7 Author: Alan Garny Date: Wed Aug 12 15:58:38 2020 +1200 Some minor cleaning up. commit 3295700d3e92ec2944e1e887589adb36ce1edcf6 Merge: 999457f65 540120998 Author: Alan Garny Date: Wed Aug 12 00:41:56 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 (closes #2371). commit 540120998a31d2ee8f1157047531e8bb61943d88 Merge: 27a79c8af 999457f65 Author: Alan Garny Date: Wed Aug 12 00:01:41 2020 +1200 Merge branch 'master' into issue2371. commit 999457f65ffba70fd167ec8910602edf7e6ec70b Merge: 7035b6117 da0992711 Author: Alan Garny Date: Wed Aug 12 00:00:10 2020 +1200 Varis improvements to our tests. commit da0992711cc9cfe7ebef5a72c0c109dfb4786d66 Author: Alan Garny Date: Tue Aug 11 22:54:06 2020 +1200 Don't make external processes time out. commit f5347c818099cd8d57e92ca2b6487c42590a6a0a Author: Alan Garny Date: Tue Aug 11 17:01:31 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit a4864f0fe109cbbe9bc0651c60c027134f3a3bf3 Author: Alan Garny Date: Tue Aug 11 16:44:31 2020 +1200 Core tests: we need our MathML tests to use QTEST_GUILESS_MAIN() on Windows. Otherwise, we get something like: ``` CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Start testing of MathmlTests CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Config: Using QtTest library 5.12.9, Qt 5.12.9 (x86_64-little_endian-llp64 shared (dynamic) debug build; by MSVC 2017) PASS : MathmlTests::initTestCase() QFATAL : MathmlTests::plusTests() ASSERT: "!m_baseURI.isRelative()" in file environment\qgenericstaticcontext.cpp, line 82 FAIL! : MathmlTests::plusTests() Received a fatal error. Unknown file(0) : failure location Totals: 1 passed, 1 failed, 0 skipped, 0 blacklisted, 91ms CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src Finished testing of MathmlTests CMakeLists.txt Jenkins.txt LICENSE.txt NOTICE.txt.in README.rst build clean clean.bat cleanall cleanall.bat cmake distrib doc ext format format.bat formats i18n make make.bat maketests maketests.bat models package package.bat res run run.bat run.vbs runtests runtests.bat scripts src ``` commit 3da6f4997e19efb4346bedf699e59874c4837b80 Author: Alan Garny Date: Tue Aug 11 14:12:04 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 0480536a12b543e76fddd98aeafd8c51372ca31f Author: Alan Garny Date: Tue Aug 11 12:32:55 2020 +1200 Some minor cleaning up. commit f22483b3766df0e7d2827375d163d6bdc56a5e50 Author: Alan Garny Date: Tue Aug 11 11:55:40 2020 +1200 Some minor cleaning up. commit 31741f88fbc099e894c57d28bf8a3fa084add328 Author: Alan Garny Date: Tue Aug 11 00:06:29 2020 +1200 Revert "Core: slight improvement to our MathML tests." This reverts commit e22409987af5bb83081999f9cd24fa9ccca8845f. commit e22409987af5bb83081999f9cd24fa9ccca8845f Author: Alan Garny Date: Tue Aug 11 00:04:44 2020 +1200 Core: slight improvement to our MathML tests. commit 13b5ab781674fb7f2f7af49d4b509a34c5422af7 Author: Alan Garny Date: Mon Aug 10 19:41:49 2020 +1200 Make CodeFactor happy. commit 993984d0fed308257602c4a26bd804626010e6ac Author: Alan Garny Date: Mon Aug 10 19:29:08 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit a92008c7f538baa9232ad1e7f2fead3b39d7fdb4 Author: Alan Garny Date: Mon Aug 10 19:07:39 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 901996717ea0bb29c263d37f739d21d1e62557d5 Author: Alan Garny Date: Mon Aug 10 18:56:22 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 552e5aaeaaa11aef454496742dd08e5ee8a4551d Author: Alan Garny Date: Mon Aug 10 18:39:06 2020 +1200 Some minor cleaning up. commit ef3a639afdd76b281ac5c68878ab0686efe20383 Author: Alan Garny Date: Mon Aug 10 18:38:53 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit 14ae94e5a936ddf7332da4c36b12eefae50ed0e8 Author: Alan Garny Date: Mon Aug 10 17:12:51 2020 +1200 Some minor cleaning up. commit 0e30b06c30b95488159ddbb1c70cd91745d1061e Author: Alan Garny Date: Mon Aug 10 17:06:13 2020 +1200 Improved the testing of our Python interface. The idea is to have only one output file per Python test (as opposed to one for each platform and each release/debug mode). commit b476b7f1d5721646f6a6c29f6a8a387ac59e1bf6 Author: Alan Garny Date: Mon Aug 10 12:08:31 2020 +1200 Revert "clcachewrapper: don't escape double quotes since we only use paths with no spaces." This reverts commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac. commit c22068da6e1873424b49c9424f019303eb858a8a Author: Alan Garny Date: Sat Aug 8 13:36:01 2020 +1200 Tests: wherever possible, use QTEST_APPLESS_MAIN() rather than QTEST_GUILESS_MAIN(). commit 27a79c8af8184f81e87368b060d904342f3c6745 Author: Alan Garny Date: Thu Aug 6 21:30:41 2020 +1200 Slight update to our downloads pages (#2371). commit 457f5d8fc96ea32180e7f6169bfb8b6a5d15f13d Author: Alan Garny Date: Thu Aug 6 21:28:17 2020 +1200 LLVM-Clang: binaries for version 10.0.1 (#2371). commit b1a90ec3e13cc923352141e75b19209cc8dc60e2 Author: Alan Garny Date: Thu Aug 6 17:09:21 2020 +1200 LLVM+Clang: upgraded to version 10.0.1 (#2371). commit 7035b6117c120b7135c1a9bb2ebf0f13dc3c8fac Author: Alan Garny Date: Sun Jul 5 11:54:41 2020 +1200 clcachewrapper: don't escape double quotes since we only use paths with no spaces. commit 7f94f451095e63ca5222499a9f8b481326e8bfc2 Merge: 6990b24c3 3b22f4731 Author: Alan Garny Date: Wed Jul 1 16:29:26 2020 +1200 Qwt: upgraded to version 6.1.5 (closes #2365). commit 3b22f4731b020543712cc7faef04faa4683f36d4 Merge: 3485a019b 6990b24c3 Author: Alan Garny Date: Wed Jul 1 15:43:08 2020 +1200 Merge branch 'master' into issue2365. commit 6990b24c34168c3861396a5dff51d46326be483c Merge: f09e0e9ad 3b8fd35ab Author: Alan Garny Date: Wed Jul 1 15:42:19 2020 +1200 QScintilla: upgraded to version 2.11.5 (closes #2364). commit 3485a019b83f4a537034d72ac8f69717d0fb69ac Author: Alan Garny Date: Wed Jul 1 15:24:47 2020 +1200 Slight update to our downloads pages (#2365). commit c8305cd7f53811c5cf36f3a4933a88707a309dc9 Author: Alan Garny Date: Wed Jul 1 15:24:28 2020 +1200 Qwt: binaries for version 6.1.5 (#2365). commit d78200ed6847944dc5be6d49d36ad6ea288c7550 Author: Alan Garny Date: Wed Jul 1 15:09:09 2020 +1200 Qwt: upgraded to version 6.1.5 (#2365). commit 3b8fd35abffa38d776cb02291af9a2d32a578923 Merge: 9bf99ab82 f09e0e9ad Author: Alan Garny Date: Wed Jul 1 15:03:03 2020 +1200 Merge branch 'master' into issue2364. commit f09e0e9ad24993a9738362badea13afe4228ad7b Merge: f8e03df6c c07e75092 Author: Alan Garny Date: Wed Jul 1 15:02:21 2020 +1200 Mesa: upgraded to version 20.1.2 (closes #2363). commit 9bf99ab82692e2caa664316e247616c7478363d4 Author: Alan Garny Date: Wed Jul 1 14:50:46 2020 +1200 Slight update to our downloads pages (#2364). commit 842fc76582ec9d06864bfcc6fed64d105ae6de28 Author: Alan Garny Date: Wed Jul 1 14:47:56 2020 +1200 QScintilla: binaries for version 2.11.5 (#2364). commit 027e382df4dba671c559d895fa0abe8012d3a921 Author: Alan Garny Date: Wed Jul 1 14:38:20 2020 +1200 QScintilla: upgraded to version 2.11.5 (#2364). commit c07e750925a77e2ea673d68bb4da2e482997e214 Author: Alan Garny Date: Wed Jul 1 14:25:43 2020 +1200 Mesa: binary for version 20.1.2 (#2363). commit b7a2fb8538e65c012dc799af4c5e70ffaf71c826 Author: Alan Garny Date: Wed Jul 1 14:10:05 2020 +1200 Revert "Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (#2358)." This reverts commit 1e7a08f264dd449a1752306ed6837fcae18e763f. Indeed, we STILL need to know whether we are building OpenCOR with Python support, in case we need to build ONLY a third-party library (e.g. Mesa). commit c6c4b6d91ae48bfb05aca20940b75b9923811b6c Author: Alan Garny Date: Wed Jul 1 13:42:46 2020 +1200 Mesa: upgrade to version 20.1.2 (#2363). commit f8e03df6ccff94f632b7d91841b68d51fecf53bf Author: Alan Garny Date: Fri Jun 19 15:42:53 2020 +1200 Properly retrieve OpenCOR's date. Oops, at some point we added an " " to the version file, which means that retrieving the last item returned an empty string...! commit f2cbf85c3987e72075a4bef5c78022dfff903d1a Merge: 7fd1280a2 168b40985 Author: Alan Garny Date: Fri Jun 19 14:23:25 2020 +1200 New snapshot. commit 168b4098575781b40587e6f2c57a959a0538dd3d Author: Alan Garny Date: Fri Jun 19 12:56:48 2020 +1200 New snapshot. commit 7fd1280a2ad97548cc8bdf5c2b5a2f4a4cea2269 Merge: 75d571005 1e7a08f26 Author: Alan Garny Date: Fri Jun 19 12:55:26 2020 +1200 Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (closes #2358). commit 1e7a08f264dd449a1752306ed6837fcae18e763f Author: Alan Garny Date: Fri Jun 19 12:25:39 2020 +1200 Build system: no need to set `PYTHON_SUPPORT` since we always have Python support (#2358). commit 75d57100514a07a77f91fd6b48225cd6ce72ba47 Merge: 7c3b22342 03244d904 Author: Alan Garny Date: Fri Jun 19 12:24:03 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 (closes #2359). commit 03244d904eafad2f07c1f3741aeca785aae2087c Author: Alan Garny Date: Fri Jun 19 11:24:11 2020 +1200 QtWebKit: reverted back to version 5.212.0 Alpha 3 (#2359). commit 7c3b2234235e4cdab84cd3641a534367f95eaf0c Author: Alan Garny Date: Thu Jun 18 17:38:07 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (#2354). commit 83777d3a249a68f37dbf03ea90664f814e4c9d9a Merge: 2f10cedf0 03dd0d7bb Author: Alan Garny Date: Thu Jun 18 17:21:23 2020 +1200 Linux: deploy libffi.so.6 (closes #2353). commit 03dd0d7bb2c0259561a730af67fbc89ca6326167 Author: Alan Garny Date: Thu Jun 18 16:51:16 2020 +1200 Linux: deploy libffi.so.6 (#2353). commit 2f10cedf0f1f7d070736f0668edbf0d1abf18843 Merge: 5a4ec4ed0 e7a3fbf78 Author: Alan Garny Date: Thu Jun 18 13:26:50 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (closes #2354). commit e7a3fbf7842866c9247d5df86dba78be11b3b611 Merge: 49fcbb1b2 5a4ec4ed0 Author: Alan Garny Date: Thu Jun 18 12:57:34 2020 +1200 Merge branch 'master' into issue2354. commit 5a4ec4ed06a237ee8cb97128c247cf642ccb7d0a Merge: a35cd9ab7 35bdbd595 Author: Alan Garny Date: Thu Jun 18 12:55:58 2020 +1200 Cleaning up. commit 49fcbb1b2bb8e200b5d637e6b2352dea8fa61544 Author: Alan Garny Date: Thu Jun 18 12:28:28 2020 +1200 Some minor cleaning up. commit 8826a39803591f7180b58fb59e96d657f4818677 Author: Alan Garny Date: Thu Jun 18 12:28:21 2020 +1200 macOS: support macOS Mojave 10.14.4 and later (#2354). commit 35bdbd59536fb6fa25e8ced57acf0272bc081b39 Author: Alan Garny Date: Thu Jun 18 11:39:06 2020 +1200 Revert "Unneeded plugins." This reverts commit d785793f64abd650721aa31d4ccb231809e19d8a. commit d785793f64abd650721aa31d4ccb231809e19d8a Author: Alan Garny Date: Wed Jun 17 17:59:24 2020 +1200 Unneeded plugins. At least, they don't seem to be needed anymore. commit 857cd1f85881ac5a35f26e1db8cd6684d304ab9a Author: Alan Garny Date: Wed Jun 17 16:46:22 2020 +1200 OpenSSL: new macOS binary. Not sure what happened, but our previous binary wasn't working on macOS 10.13, only macOS 10.14 and 10.15...!? (macOS 10.13 claims that OpenSSL was built for macOS 10.15.) commit d0702f63748da26c6c930795a49355c5bbf96c79 Author: Alan Garny Date: Wed Jun 17 16:43:21 2020 +1200 Qt WebKit: new Linux binary. This is a revert of commit b45dfd332 where we built Qt WebKit with a special RPATH value, which we don't need. commit 66d8722dede0893fdf5067842bc71f6587fffe55 Author: Alan Garny Date: Wed Jun 17 16:33:26 2020 +1200 Linux: libffi.so.6 is needed by Python (well, NumPy), not Qt WebKit. Yet, there is no point in shipping it since it's not one of "our" files that needs libffi.so.6. Our solution may be to upgrade NumPy. Will have to see... commit b45dfd33287a6407ada7f047734925831318970b Author: Alan Garny Date: Wed Jun 17 15:59:43 2020 +1200 Qt WebKit: new Linux binary. On Ubuntu 20.04, we now need access to libffi.so.6! commit 85d83a8034c6a8f805fe48abbac939cd2fbb9f64 Author: Alan Garny Date: Wed Jun 17 14:51:12 2020 +1200 Qt WebKit: new macOS binary. Not sure what happened, but our previous binary wasn't working on macOS 10.13, only macOS 10.14 and 10.15...!? (macOS 10.13 claims that Qt WebKit was built for macOS 10.15.) commit a35cd9ab7d3fa43e5ba9679f6dbdb9bdee2fb1e0 Merge: e3b172cd8 a4df8db11 Author: Alan Garny Date: Wed Jun 17 09:36:46 2020 +1200 New snapshot. commit a4df8db1184e5b974aa51a1a49cce097f5d55953 Author: Alan Garny Date: Wed Jun 17 08:57:36 2020 +1200 New snapshot. commit e3b172cd874f5e277d49a91befacf68dcc6f675f Merge: 950f55422 4ddecf941 Author: Alan Garny Date: Mon Jun 15 17:45:54 2020 +1200 Some minor cleaning up. commit 4ddecf9416d631620d13ff8ba95e088773c8d975 Author: Alan Garny Date: Mon Jun 15 17:08:23 2020 +1200 Some minor cleaning up. commit 950f5542239adf00a8b707a2e75810aff2877b90 Merge: 52c155bd0 71c0acbfd Author: Alan Garny Date: Mon Jun 15 14:12:57 2020 +1200 Cleaning up. commit 71c0acbfdde5cb32a9468c4a3bdb10f72d145118 Author: Alan Garny Date: Mon Jun 15 13:36:02 2020 +1200 Some minor cleaning up. commit 33c6cd5d98462988b535e24b2efc9f8cde2659bc Author: Alan Garny Date: Sun Jun 14 16:00:22 2020 +1200 Some minor cleaning up. commit 6f9bd7c9b862b7b59ad0e5f817815314339bfbf0 Author: Alan Garny Date: Sun Jun 14 15:50:26 2020 +1200 Some minor cleaning up. commit 57ed29a3fbc4822afce35b475cb562665152e52a Author: Alan Garny Date: Sun Jun 14 15:36:16 2020 +1200 Some minor cleaning up. commit a0e0b715c4e409ed921fd79e06f492b0bcb930ef Author: Alan Garny Date: Sun Jun 14 15:35:00 2020 +1200 Some minor cleaning up. commit af4affc677c29157d5144a9d2ab214a9ebfdde81 Author: Alan Garny Date: Sun Jun 14 15:33:25 2020 +1200 Some minor cleaning up. commit cd8d81fc76cc46dbc97df4c0dfd68c3c9fcc999a Author: Alan Garny Date: Sun Jun 14 15:22:04 2020 +1200 Some minor cleaning up. commit f4797eafe5017f1e6f97e60064fcdd01440505e5 Author: Alan Garny Date: Sun Jun 14 14:18:54 2020 +1200 Some minor cleaning up. commit c5c2c2c701e848109ac83e1911d5db437c7a6a3b Author: Alan Garny Date: Sun Jun 14 14:15:59 2020 +1200 Some minor cleaning up. commit ca22dd814730dfbdc1e294c70dab49f4de5bf9b3 Author: Alan Garny Date: Sun Jun 14 13:27:01 2020 +1200 Some minor cleaning up. commit d1c387820e2a93110fbecd87625fcc742eb6c925 Author: Alan Garny Date: Sun Jun 14 13:23:49 2020 +1200 Some minor cleaning up. commit afd99931fc1473bacf2439f5fb39e2784bc8f222 Author: Alan Garny Date: Sun Jun 14 13:17:32 2020 +1200 Some minor cleaning up. commit eda680fcd77a5dae58458f1d872475939540b093 Author: Alan Garny Date: Fri Jun 12 18:22:15 2020 +1200 Some minor cleaning up. commit 52c155bd02c3f3c18fd39e634b131dfd9c7f9273 Merge: 8bf7a1ef7 8db859df3 Author: Alan Garny Date: Fri Jun 5 16:36:35 2020 +1200 libgit2: upgraded to version 1.0.1 (closes #2348). commit 8db859df305051db3ba020b8ac4e63b80aefd155 Author: Alan Garny Date: Fri Jun 5 09:13:12 2020 +1200 Slight update to our downloads page (#2348). commit af3fe65ab5445a795bd1cdd87845a8c160b43d83 Author: Alan Garny Date: Fri Jun 5 08:57:21 2020 +1200 libgit2: binaries for version 1.0.1 (#2348). commit bea92b0cc734c78131e6fbc89cdf7c599a1d30db Author: Alan Garny Date: Fri Jun 5 08:49:22 2020 +1200 libgit2: upgraded to version 1.0.1 (#2348). commit 8bf7a1ef7b31331aacd356df8fa1e162b282de3e Merge: 1f1da792f 9cbbb7370 Author: Alan Garny Date: Sun May 31 13:14:15 2020 +1200 libgit2: upgrade to version 0.28.5 (closes #2346). commit 9cbbb7370fb99dce64c496ac71d1ab71c3d9972b Author: Alan Garny Date: Sun May 31 12:50:11 2020 +1200 PMR support: ported (back) our libgit2-related code to version 0.28.5 (#2305). commit 71ddf9e2cf8f61ea61732c93039922c37b6495f8 Author: Alan Garny Date: Sun May 31 12:44:25 2020 +1200 Slight update to our downloads page (#2346). commit 53cc0c12b8298989c618c90f0e246cd1d659fb07 Author: Alan Garny Date: Sun May 31 12:43:18 2020 +1200 libgit2: binaries for version 0.28.5 (#2346). commit b3a222572951ff5ba06c775f3d29acc6d67318dd Author: Alan Garny Date: Sun May 31 12:31:33 2020 +1200 libgit2: upgraded to version 0.28.5 (#2346). commit 1f1da792f27a3ed203cc5dd6b2f940204daeeba7 Merge: 357e5345c 6f71bfee8 Author: Alan Garny Date: Tue May 26 18:50:56 2020 +1200 SUNDIALS: upgraded to version 5.3.0 (closes #2344). commit 6f71bfee8a519ee344f026b4318dfc03cdcf6688 Author: Alan Garny Date: Tue May 26 18:06:34 2020 +1200 Slight update to our downloads page (#2344). commit a5d44d865def80031b51935163ef52a17484b393 Author: Alan Garny Date: Tue May 26 18:05:29 2020 +1200 SUNDIALS: binaries for version 5.3.0 (#2344). commit 18fd583dd4bc300b4d9b871732f0bb8bfe12de2e Author: Alan Garny Date: Tue May 26 17:58:18 2020 +1200 SUNDIALS: upgraded to version 5.3.0 (#2344). commit 357e5345c21c2a32da94bbf51cbc9061282cb5ce Merge: 5747f9d00 2a26b250d Author: Alan Garny Date: Fri May 15 17:29:12 2020 +1200 Mesa: upgraded to version 20.0.7 (closes #2342). commit 2a26b250d3ab1d10b56161565b3b5ba01f0c5f75 Author: Alan Garny Date: Fri May 15 16:41:46 2020 +1200 Slight update to our downloads page (#2342). commit 68caa9fc6e566d14661e8788a4b3a23f5f828ab0 Merge: 977ce4012 5747f9d00 Author: Alan Garny Date: Fri May 15 16:39:59 2020 +1200 Merge branch 'master' into issue2342. commit 5747f9d006ced6283f7f9126a42e5205e71e753b Merge: c80d70e03 c76ee1185 Author: Alan Garny Date: Fri May 15 16:39:06 2020 +1200 libgit2: upgraded to version 1.0.0 (closes #2340). commit 977ce4012e26d5ce09024bff0172448d99ae3e08 Author: Alan Garny Date: Fri May 15 16:02:25 2020 +1200 Mesa: binary for version 20.0.7 (#2342). commit 3040e95d2914bdaf461c35992d161c7348c06c4a Author: Alan Garny Date: Fri May 15 15:54:15 2020 +1200 Mesa: upgraded to version 20.0.7 (#2342). commit c76ee1185756c92fe85d29e92bcbedd66e402b9e Author: Alan Garny Date: Fri May 15 15:42:15 2020 +1200 Slight update to our downloads page (#2340). commit 81022ef9dd9c34fcbec805bc993adbdb45769daf Author: Alan Garny Date: Fri May 15 15:42:02 2020 +1200 libgit2: binaries for version 1.0.0 (#2340). commit 51992b84d4225372d1ad3fb1696d29dd7dd47a8e Author: Alan Garny Date: Fri May 15 15:25:14 2020 +1200 libgit2: upgraded to version 1.0.0 (#2340). commit c80d70e0346672b28df54720bea2fe2d9a560ee8 Merge: b91bc8425 856777886 Author: Alan Garny Date: Fri May 15 15:04:41 2020 +1200 jQuery: upgraded to version 3.5.1 (closes #2338). commit 8567778864b8e5972fa0c797eed380f6cf2428b0 Author: Alan Garny Date: Fri May 15 14:38:35 2020 +1200 Slight update to our downloads page (#2338). commit d3c2544b8ab3f0a50fabbb8142db24f6db9b5bd6 Author: Alan Garny Date: Fri May 15 14:36:51 2020 +1200 jQuery: upgraded to version 3.5.1 (#2338). commit b91bc84254d9eb5bba5b0186cad0557b9be694ec Merge: 622139c56 3c55e6254 Author: Alan Garny Date: Tue May 12 14:17:27 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object (closes #2336). commit 3c55e625489387673b067cb6697cf4fcc7006546 Author: Alan Garny Date: Tue May 12 13:23:43 2020 +1200 Slight update to our downloads page (#2336). commit f30d20688d19e4b3de675bffc4a2b075273d57d8 Author: Alan Garny Date: Tue May 12 13:19:43 2020 +1200 Slight reordering of our CellML variable type (#2336). Just so that the order looks "better". commit 5559289a1f8ece9976c7ac5710c359cf3397db7a Author: Alan Garny Date: Tue May 12 13:13:45 2020 +1200 Python support: make it possible to retrieve the type of a DataStoreVariable object (#2336). commit 622139c56990ceb7833d0db1a14af9bc2b2a5edf Merge: d2535c38b 66f01fbcf Author: Alan Garny Date: Mon May 4 14:05:29 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit 66f01fbcfc9aaf0bbf0a63650faa020e83092853 Author: Alan Garny Date: Mon May 4 13:18:26 2020 +1200 Oxygen library: upgraded to version 5.68.0. commit d2535c38b2e13bfeb2472138a4620591c8a46214 Merge: e64c399c8 14a447c89 Author: Alan Garny Date: Sat Apr 25 19:06:31 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches (#2332). commit 14a447c893e83ed31b3ce6f2656c8878ffe979aa Author: Alan Garny Date: Sat Apr 25 18:00:33 2020 +1200 Slight update to our downloads page (#2332). commit 5536aa7a2188a71af74c253b877908804c65a51a Author: Alan Garny Date: Sat Apr 25 17:59:12 2020 +1200 Simulation Experiment view: fixed a couple of GUI glitches (#2332). commit e64c399c81f12a02da02bf6327119c3c3c223fcc Merge: 0aca40edc c864195f4 Author: Alan Garny Date: Wed Apr 22 15:23:59 2020 +1200 CellML Annotation view: can't look up a resource or an id anymore?! (closes #2190). commit c864195f4130249f8b7ade893371a34857dac9f8 Merge: 9ddccda5e 0aca40edc Author: Alan Garny Date: Wed Apr 22 14:57:02 2020 +1200 Merge branch 'master' into issue2190 commit 9ddccda5ec64fe9b389fb1464ef5a3b86110f3c6 Author: Alan Garny Date: Wed Apr 22 14:55:44 2020 +1200 Merge branch 'master' into issue2190. commit a19d95172df7fbdbf2e03591d198810c4206905a Author: Alan Garny Date: Wed Apr 22 14:52:40 2020 +1200 Slight update to our downloads page (#2190). commit fc2f03a3cd8994eef4b556106facb99aa8fb988f Author: Alan Garny Date: Wed Apr 22 14:49:20 2020 +1200 Some minor cleaning up. commit 0aca40edc7c208a2c5415cc646c7449c6003c8fe Merge: 8323419f2 0987196ad Author: Alan Garny Date: Wed Apr 22 13:07:58 2020 +1200 OpenSSL: upgraded to version 1.1.1g (closes #2326). commit 0987196ad61638161cd53605378e8027eeedec0e Author: Alan Garny Date: Wed Apr 22 09:10:20 2020 +1200 Slight update to our downloads page (#2326). commit d7153c1c1a6ba7f37553cd0fa1bcb1aaf61a0bbe Author: Alan Garny Date: Wed Apr 22 09:10:06 2020 +1200 OpenSSL: binaries for version 1.1.1g (#2326). commit 6837bbf7a03fcf4e1d87c56724b9c13eedb1ec89 Author: Alan Garny Date: Wed Apr 22 08:39:45 2020 +1200 OpenSSL: upgraded to version 1.1.1g (#2326). commit 8323419f27260424c26c2045833c00099c3cd746 Merge: 5136211dc dc57483d3 Author: Alan Garny Date: Tue Apr 21 17:44:02 2020 +1200 SUNDIALS: upgraded to version 5.2.0 (closes #2322). commit dc57483d3059f1d2c2f9a43c6ad180d98d21aa84 Author: Alan Garny Date: Tue Apr 21 17:13:59 2020 +1200 Slight update to our downloads page (#2322). commit dfa0b24b3a73e6e1a7a21a5c39f4b11b734aed6b Author: Alan Garny Date: Tue Apr 21 17:13:48 2020 +1200 SUNDIALS: binaries for version 5.2.0 (#2322). commit f0247410e4a36ac64acda1b446c9e53bc2cd908d Author: Alan Garny Date: Tue Apr 21 17:01:24 2020 +1200 SUNDIALS: upgraded to version 5.2.0 (#2322). commit 6acaaf3e0f181ea55e877d6622e18ddc8d95f0b6 Merge: bcf2ef76b 5136211dc Author: Alan Garny Date: Thu Apr 9 18:23:30 2020 +1200 Merge branch 'master' into issue2190. commit 5136211dc69710e55256a2f725ec3b1cf17734ab Author: Alan Garny Date: Thu Apr 9 18:22:50 2020 +1200 Some minor cleaning up. commit bcf2ef76b8b70583310bba52b4dfe5362bc6777c Merge: b8d9e28ee e4b938a97 Author: Alan Garny Date: Thu Apr 9 17:37:24 2020 +1200 Merge branch 'master' into issue2190. commit e4b938a9721899c52dbfe16e424e467f7a4afdfc Author: Alan Garny Date: Thu Apr 9 17:35:36 2020 +1200 Added the 2019-12-20 snapshot. For some reasons, it got removed... by mistake, I imagine! commit b8d9e28ee795307f611547fab25e97568729768a Merge: 60e37baa1 cdacb2dc4 Author: Alan Garny Date: Wed Apr 8 10:28:24 2020 +1200 Merge branch 'master' into issue2190. commit cdacb2dc448e07c7d1375281ff6cef07532ab8ae Author: Alan Garny Date: Wed Apr 8 10:27:37 2020 +1200 Make it possible to run a debug version of OpenCOR from within Qt Creator. commit 60e37baa10461118890bea6aaf596061f02fe125 Author: Alan Garny Date: Fri Apr 3 12:02:56 2020 +1300 Some minor cleaning up. commit 37135d7b13a00113843e2e4bb1c7cb6c0620c5bb Author: Alan Garny Date: Fri Apr 3 11:49:15 2020 +1300 CellML Annotation view: updated our use of identifiers.org (#2190). commit 47354444a9b8c7da8f4496b471f2909ee8c82dd2 Merge: 046d54b05 9c2c8985a Author: Alan Garny Date: Thu Apr 2 18:31:33 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 (closes #2314). commit 9c2c8985ad90e4d6aed6717b716b3d72e764d894 Author: Alan Garny Date: Thu Apr 2 17:30:02 2020 +1300 Use the C++14 standard for both our main executable and all our plugins (#2314). We need support for the C++14 standard so that we can use LLVM+Clang 10.0.0. So, technically speaking, our main executable doesn't need that support, only our plugins that directyle or indirectly rely on LLVM+Clang. commit 248ff7ac47ad41240492812cdcccae92fee072e1 Author: Alan Garny Date: Thu Apr 2 10:54:29 2020 +1300 Compiler: account for clang::CompilerInvocation::CreateFromArgs()'s new signature (#2314). commit 95d321008e5396a5abec16723d1a3191d384567e Author: Alan Garny Date: Wed Apr 1 23:09:27 2020 +1300 Slight update to our downloads page (#2314). commit c0da74d04dbba41934a500c04b0e803faa78b39c Author: Alan Garny Date: Wed Apr 1 23:04:34 2020 +1300 LLVM+Clang: binaries for version 10.0.0 (#2314). commit 097e34c62634d883b88b290eabb84e528c02e6c0 Author: Alan Garny Date: Wed Apr 1 18:49:04 2020 +1300 LLVM+Clang: binaries for version 10.0.0 (#2314). commit b66a1be21f53b567a81bbe4ef356d4429ac74084 Author: Alan Garny Date: Wed Apr 1 13:40:51 2020 +1300 LLVM+Clang: handle new options / remove old options (#2314). Partly reverted commit 6f30b98d3 (#2314). Indeed, those options were listed when doing a `ccmake`, but they are not actually used afterwards...!? As confirmed by `cmake -LA`. commit 6f30b98d35de582f53ec2749ffd288d7eb45bb2e Author: Alan Garny Date: Wed Apr 1 13:06:00 2020 +1300 LLVM+Clang: handle new options / remove old options (#2314). commit 62afa82e6873e16524613f0d011c5f77b5510f52 Merge: 47ed2cdbe 046d54b05 Author: Alan Garny Date: Wed Apr 1 11:44:25 2020 +1300 Merge branch 'master' into issue2314. commit 046d54b0558d90cd73569bcff8917007111b7305 Merge: 2a07b83ae 3e682debc Author: Alan Garny Date: Wed Apr 1 11:43:29 2020 +1300 OpenSSL: upgraded to version 1.1.1f (closes #2318). commit 3e682debc192aeae2b863051cb6bfee095cbbf1d Author: Alan Garny Date: Wed Apr 1 10:12:03 2020 +1300 Slight update to our downloads page (#2318). commit 5de9a85afd64cd70cd48c48a2eab9a5457a4938e Author: Alan Garny Date: Wed Apr 1 10:11:43 2020 +1300 OpenSSL: binaries for version 1.1.1f (#2318). commit eab7c142b07f9b37966d63caadf9d041dc3ebf64 Author: Alan Garny Date: Wed Apr 1 09:47:36 2020 +1300 OpenSSL: upgraded to version 1.1.1f (#2318). commit 47ed2cdbe9ee61ed45d475db15d295d37ed6bf7d Author: Alan Garny Date: Tue Mar 31 10:46:58 2020 +1300 LLVM+Clang: upgraded to version 10.0.0 (#2314). commit 2a07b83ae6b66247a6f554054e71abd8b7a4c181 Merge: e08a46833 16eeba596 Author: Alan Garny Date: Mon Mar 30 22:19:19 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 (closes #2309). commit 16eeba59684f4ecf06db55f226b1b08d6468f688 Author: Alan Garny Date: Mon Mar 30 21:50:14 2020 +1300 QtWebKit: binaries for version 5.212.0 Alpha 4 (#2309). commit 43abcf852f05e0852f91e28377936a344fa789c2 Author: Alan Garny Date: Sat Mar 28 19:25:22 2020 +1300 QtWebKit: slight update to our README.rst file. commit 6d8a4328d8ed3485ce4006a3bd79cc220853fecd Author: Alan Garny Date: Sat Mar 28 19:22:38 2020 +1300 QtWebKit: Python 3.x is now needed to build the library (#2309). commit 890702a4f98bc6ef9f742ef793fab48a580182d5 Author: Alan Garny Date: Sat Mar 28 19:21:57 2020 +1300 QtWebKit: slight updates to our prerequisites to building the library. commit 2c254f0a2c66a63a755d35b2fdb4fcddabd79cdf Author: Alan Garny Date: Sat Mar 28 19:18:27 2020 +1300 QtWebKit: Python 3 is now needed to build the library (#2309). commit b82f9bd4302c668a4c5be4146bc40c0296d07b19 Author: Alan Garny Date: Fri Mar 27 16:20:03 2020 +1300 QtWebKit: use the PORT option to build the library (#2309). commit 350f42f6928768b51056f393f85f4c1f81205b0b Author: Alan Garny Date: Fri Mar 27 09:13:55 2020 +1300 QtWebKit: upgraded to version 5.212.0 Alpha 4 (#2309). commit e08a468335e831b7dc89280aa9e191d83d891f7d Merge: 5100976da f33e14152 Author: Alan Garny Date: Thu Mar 26 19:07:06 2020 +1300 QScintilla: upgraded to version 2.11.4 (closes #2307). commit f33e1415247192ce76842f484fae54fa9fd4ed0b Author: Alan Garny Date: Thu Mar 26 18:15:08 2020 +1300 Slight update to our downloads page (#2307). commit 207da208484266835a2d85e736216feb80147cf4 Author: Alan Garny Date: Thu Mar 26 18:14:52 2020 +1300 QScintilla: binaries for version 2.11.4 (#2307). commit 651faf190b4217092fe3bca4bf1cd6ddd30e4ecb Author: Alan Garny Date: Thu Mar 26 18:05:43 2020 +1300 QScintilla: upgraded to version 2.11.4 (#2307). commit 5100976daed63908e9f1004e78c2c8cc5516001c Merge: ddd99e05a fa667974b Author: Alan Garny Date: Thu Mar 26 16:59:35 2020 +1300 OpenSSL: upgraded to version 1.1.1e (closes #2310). commit fa667974bcb5d5ee367109060cabc86dda30cd31 Author: Alan Garny Date: Thu Mar 26 16:07:38 2020 +1300 Slight update to our downloads page (#2310). commit 044eae571edcf9350684ccf7d472d3eddc1e72a8 Author: Alan Garny Date: Thu Mar 26 16:07:18 2020 +1300 OpenSSL: binaries for version 1.1.1e (#2310). commit ecb636c38d67a993946534776adbccaa0a8e485c Merge: 9abf84843 ddd99e05a Author: Alan Garny Date: Thu Mar 26 15:42:22 2020 +1300 Merge branch 'master' into issue2310. commit ddd99e05a5d7ae9673f0183c9cb5382cab0bde24 Merge: f88280ef7 db48daaf8 Author: Alan Garny Date: Thu Mar 26 15:41:07 2020 +1300 libgit2: upgraded to version 0.99.0 (closes #2305). commit db48daaf8edb982e1178a0038dd23ec2e11fa561 Author: Alan Garny Date: Thu Mar 26 15:04:33 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit d62b159cf95730acf113362664b86adbb1f70600 Author: Alan Garny Date: Thu Mar 26 14:54:11 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit 24b0ba037206a215f72a98d39d20e67de526d4ac Author: Alan Garny Date: Thu Mar 26 14:51:08 2020 +1300 libgit2: version 0.99.0 now requires the major version in the filename (#2305). commit 9abf8484362885a2e05129fe68fc3c470fe73480 Author: Alan Garny Date: Thu Mar 26 11:56:53 2020 +1300 OpenSSL: upgraded to version 1.1.1e (#2310). commit 8302b448af2a130677a0ec80630e8c43dc6512d8 Author: Alan Garny Date: Mon Mar 23 16:02:06 2020 +1300 Slight update to our downloads page (#2305). commit 83995ad1f7a379f1a9d6264c4a0cd4ef95ce4b82 Author: Alan Garny Date: Mon Mar 23 15:58:39 2020 +1300 PMR support: ported our libgit2-related code to version 0.99.0 (#2305). commit 37b1a2f7620b9c3b0923e022baf2bcb50f6e2896 Author: Alan Garny Date: Mon Mar 23 15:57:54 2020 +1300 libgit2: binaries for version 0.99.0 (#2305). commit 2c2d2f7fabb6fd53ae1e7dd630e0c0831de207eb Author: Alan Garny Date: Mon Mar 23 15:40:22 2020 +1300 libgit2: upgraded to version 0.99.0 (#2305). commit f88280ef7a3af68a80a9192aabf44ce96b175e5d Merge: 9fdcb0c94 b71947729 Author: Alan Garny Date: Mon Mar 23 10:59:32 2020 +1300 Mesa: upgraded to version 20.0.2 (#2311), commit b719477298de6a73e2e9f17313d77a8aa5c8582c Author: Alan Garny Date: Mon Mar 23 10:10:02 2020 +1300 Slight update to our downloads page (#2311). commit f24976785885a2d32cd88875dd1eccf751d90e2e Author: Alan Garny Date: Mon Mar 23 10:08:56 2020 +1300 Mesa: binary for version 20.0.2 (#2311). commit dfe3536cf056a8b41e8e63a88413953b9f022b6c Author: Alan Garny Date: Mon Mar 23 10:00:11 2020 +1300 Mesa: upgraded to version 20.0.2 (#2311). commit 9fdcb0c94b7f28616ed45b93bf9311d1442b3863 Merge: 90b09d1d5 9c7a1c400 Author: Alan Garny Date: Fri Feb 28 18:31:33 2020 +1300 Mesa: upgraded to version 20.0.0 (closes #2306). commit 9c7a1c400c37801ce53b1d3e05881a1301baccc7 Author: Alan Garny Date: Fri Feb 28 16:16:52 2020 +1300 Slight updates to our downloads pages (#2306). commit 9545a3258818aecf318c35905adc66fc0310041e Author: Alan Garny Date: Fri Feb 28 16:14:23 2020 +1300 Mesa: binary for version 20.0.0 (#2306). commit 9d2a803781ed9ce352f58bce3bc2190345adb922 Author: Alan Garny Date: Fri Feb 28 16:02:15 2020 +1300 Mesa: upgraded to version 20.0.0 (#2306). commit 90b09d1d5b27e48ab35d0552b34d890612f0339a Merge: f4aded802 db1dd56da Author: Alan Garny Date: Thu Feb 20 15:00:35 2020 +1300 Some minor cleaning up. commit db1dd56da6255014e932259b9e8b1cb0b2c44f5b Author: Alan Garny Date: Thu Feb 20 14:08:28 2020 +1300 Slight update to our Jupyter notebook. So that it can use our new Python interface! commit c323d79e1b70210d8c1c19db6945e4bea1906275 Author: Alan Garny Date: Thu Feb 20 13:32:02 2020 +1300 Slight changes to our Lorenz SED-ML file / COMBINE archive. commit f4aded802e29eb508b751348ab6c1fdffc676d1a Merge: 74a7e9b41 e98727d0d Author: Alan Garny Date: Fri Feb 14 16:03:25 2020 +1300 New snapshot. commit e98727d0d4d83893a13e02636b9a708f5bec0961 Author: Alan Garny Date: Fri Feb 14 15:31:53 2020 +1300 New snapshot. commit 74a7e9b41700f373c867693c788241500bd73ed3 Merge: df56c43cf a3edca5f6 Author: Alan Garny Date: Fri Feb 14 15:29:39 2020 +1300 CellML support: improved the generation of runtime (closes #2285). commit a3edca5f60d4a93c08a232361034e495701609ff Author: Alan Garny Date: Fri Feb 14 14:51:34 2020 +1300 Slight updates to our downloads and what is new pages (#2285). commit 0e2319f882243f58ad048bad8b27f21e4cbd0907 Author: Alan Garny Date: Fri Feb 14 14:45:38 2020 +1300 Reverted part of commits 7dce10c34, 683f9df4b, f3da3f05c, 616d61b86 and 264b434a2. commit dc7098830546dc39e91e03a20919f6bac97f6607 Merge: 264b434a2 df56c43cf Author: Alan Garny Date: Thu Feb 13 17:55:10 2020 +1300 Merge branch 'master' into issue2285. commit df56c43cf118584aa928b28f028097a240de6a79 Merge: ece521b4e 41b8f9110 Author: Alan Garny Date: Thu Feb 13 17:54:32 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs (closes #2299). commit 41b8f9110e7b6276d8c66881eb27b43c31693969 Author: Alan Garny Date: Thu Feb 13 17:24:42 2020 +1300 Slight update to our downloads page (#2299). commit e1874e473876f3ea036fb642a5e4970f95e51ea5 Author: Alan Garny Date: Thu Feb 13 17:23:29 2020 +1300 Simulation Experiment view: fixed a small problem with not being able to reset a simulation that generates NANs (#2299). We used to compare using qIsNull() and then, at some point, we replaced it with qFuzzyCompare() which ought to be the correct way of doing things except that it doesn't work with NAN (and probably INF) values. At least, not in release mode (yes, everything works fine in debug mode!), so we are now also checking for INF and NAN values. commit 264b434a225958d1fa1bd9ac930ea4d05e17c2a2 Author: Alan Garny Date: Thu Feb 13 15:23:40 2020 +1300 Plugins dialog: make categories checkable if they contain selectable plugins. This is part of our work on issue #2285. commit 616d61b86c792acea70a7b3a23112111dc2ab99f Author: Alan Garny Date: Thu Feb 13 15:00:41 2020 +1300 Plugins dialog: show/hide non-selectable plugins. This is part of our work on issue #2285. commit af3b6c48fd9c5129fa097250a91293e1c339edc1 Author: Alan Garny Date: Thu Feb 13 14:40:03 2020 +1300 Some minor cleaning up. commit f3da3f05c05fe1806d24176c454fff2ceb9faf12 Author: Alan Garny Date: Wed Feb 12 18:00:31 2020 +1300 Plugins/preferences dialog: make sure that, the first time round, the description is correct. This is part of our work on issue #2285. commit 683f9df4b18244271e5d0fd2a11bbef8722fd910 Author: Alan Garny Date: Wed Feb 12 17:15:35 2020 +1300 Plugins dialog: make sure that we can see the check boxes and icons. This is part of our work on issue #2285. commit dbc87b32f55316fc1d2a324100628c6a9e53817a Author: Alan Garny Date: Wed Feb 12 16:42:23 2020 +1300 Some minor cleaning up. commit 7dce10c342edaf48b73ffa0064a07ce1936629a9 Author: Alan Garny Date: Wed Feb 12 15:26:06 2020 +1300 Plugins and preferences dialog: improved our use of tree views. This is part of our work on issue #2285. commit 5215a3848fb0ff66885d7ca8dc6eb54db75fa7e9 Author: Alan Garny Date: Mon Feb 10 17:53:54 2020 +1300 Some minor cleaning up. commit d49e2bd8f7f52008424a48324a3ba2d7e32a9dbd Merge: cb0237f84 ece521b4e Author: Alan Garny Date: Mon Feb 10 16:51:49 2020 +1300 Merge branch 'master' into issue2285. commit ece521b4ee54e51bbe6bf82295b7e76082a364e5 Merge: 6d212ca3b 2083b26d6 Author: Alan Garny Date: Mon Feb 10 16:51:09 2020 +1300 Graph Panel widget: fixed a small problem that resulted in the legend being misplaced when exporting a graph panel (closes #2297). commit 2083b26d668e27c6c1f1df3618ef695d4b6244a6 Author: Alan Garny Date: Mon Feb 10 16:19:33 2020 +1300 Slight update to or downloads page (#2297). commit b9dc7194004dc8573d52f1d40ccd151c9c88983d Author: Alan Garny Date: Mon Feb 10 16:14:47 2020 +1300 Graph Panel widget: fixed an issue that resulted in the legend being misplaced when exporting a graph panel (#2297). commit badc44dae18b0eb9b36a3583c5662f90469bfc1d Author: Alan Garny Date: Mon Feb 10 11:12:50 2020 +1300 Some minor cleaning up. commit cb0237f84b1f84c98d818193b578f8f30fee5935 Author: Alan Garny Date: Wed Feb 5 17:30:00 2020 +1300 Some minor cleaning up. commit 0945f1df4e7a84039755d95541f35592cb441062 Author: Alan Garny Date: Wed Feb 5 17:11:25 2020 +1300 CellML support: improved the speed with which we update our runtime (#2285). commit 32caa507baa3ba9975dc955bce59338a95ab75e1 Merge: cfad002dd 6d212ca3b Author: Alan Garny Date: Wed Feb 5 16:08:42 2020 +1300 Merge branch 'master' into issue2285. commit 6d212ca3b84c1471bd730727e0374ef5d2f9be49 Merge: e0dcdb50a 7c3a13ead Author: Alan Garny Date: Wed Feb 5 16:06:59 2020 +1300 Some minor cleaning up. commit 7c3a13eadadab13924da73172f74027c62a52091 Author: Alan Garny Date: Wed Feb 5 15:18:37 2020 +1300 Some minor cleaning up. commit fce9896abf2b7d6c62a94bce9890b1acdfd24217 Author: Alan Garny Date: Wed Feb 5 14:53:54 2020 +1300 Reverted part of commit 0c9e02cf3. I did a bit too much cleaning up! commit cfad002dd04c2ddae1a867a40182c737f1de5482 Merge: e682da9a1 e0dcdb50a Author: Alan Garny Date: Wed Feb 5 14:13:08 2020 +1300 Merge branch 'master' into issue2285. commit db573dfaef78253f3f20e6aba5f593f2e998c215 Merge: e682da9a1 e0dcdb50a Author: Alan Garny Date: Wed Feb 5 14:12:44 2020 +1300 Merge branch 'master' into cleaning-up. commit e682da9a1a17ae74802617a19a0eae8e3f985081 Author: Alan Garny Date: Wed Feb 5 14:09:51 2020 +1300 Some minor cleaning up. commit f6075c33825e31991b455d8e93336f7397439d23 Author: Alan Garny Date: Wed Feb 5 14:00:34 2020 +1300 Some minor cleaning up. commit 776b7f936b210dc06200184aa4aba82394924799 Author: Alan Garny Date: Wed Feb 5 13:51:55 2020 +1300 Some minor cleaning up. commit 1d552c27a53697f54b96d788978ee707f53e2307 Author: Alan Garny Date: Wed Feb 5 13:32:32 2020 +1300 Some minor cleaning up. commit 549a4ecf810c9d12075e4dac718721c38eba6fcb Author: Alan Garny Date: Wed Feb 5 13:14:46 2020 +1300 Some minor cleaning up. commit 0c9e02cf333377d787e4e3dd6a28485d7380e88c Author: Alan Garny Date: Wed Feb 5 13:13:57 2020 +1300 Some minor cleaning up. commit e0dcdb50a34078f65d37a17929f6250ed3ef2317 Merge: e94033e73 dc121d836 Author: Alan Garny Date: Wed Feb 5 11:55:48 2020 +1300 Cleaning up. commit dc121d836021aaaf2e77fad6624d7b5947dcfc43 Author: Alan Garny Date: Tue Feb 4 17:36:41 2020 +1300 Some minor cleaning up. commit 4edb0305b9ac0823ec240e58d3ad23487faa81f4 Author: Alan Garny Date: Tue Feb 4 17:21:41 2020 +1300 Some minor cleaning up. commit 889a50558acb681bf4b10dd87dea35501e6b3f35 Author: Alan Garny Date: Tue Feb 4 16:21:26 2020 +1300 Some minor cleaning up. commit 31a7df4c0df5acf7674f7fdf8931fa12716a6528 Author: Alan Garny Date: Tue Feb 4 16:13:16 2020 +1300 Some minor cleaning up. commit 23d4c2f088b27b63083b801541274b0b44401883 Author: Alan Garny Date: Tue Feb 4 14:49:35 2020 +1300 Some minor cleaning up. commit ab8b775f19253fe3088407d56f176dc0478afc6f Author: Alan Garny Date: Tue Feb 4 11:26:13 2020 +1300 Some minor cleaning up. commit 18c008ec0f361eb0c63cd0e45ada93eacdc155bb Author: Alan Garny Date: Tue Feb 4 11:24:39 2020 +1300 Some minor cleaning up. commit 6309d4a8f8373a9db16c4f66fcca7a2746312f90 Author: Alan Garny Date: Tue Feb 4 10:52:03 2020 +1300 Some minor cleaning up. commit e94033e73a746c8464a95c5fdf3f926b9f33e05e Merge: 9eda69688 968153727 Author: Alan Garny Date: Tue Feb 4 09:34:28 2020 +1300 CellML Text view: greatly reduced the time and memory required to do syntax highlighting (closes #2284). commit 968153727a9c592b5d4db077be7d87b18ab57eb5 Author: Alan Garny Date: Mon Feb 3 17:52:06 2020 +1300 Slight updates to our downloads and what is new pages (#2284). commit 6f685ee9a878f4656e0d6d60614af8bc3ba3d45b Author: Alan Garny Date: Mon Feb 3 17:46:32 2020 +1300 Some minor cleaning up. commit 7396401b5bacdd594730b4e7c3795d8df4094a90 Author: Alan Garny Date: Mon Feb 3 17:39:24 2020 +1300 Some minor cleaning up. commit f4330e97ed8915ef0e21ef19bc3295f92ed128cd Author: Alan Garny Date: Mon Feb 3 17:19:39 2020 +1300 CellML Text view: improved our lexer by not keeping track of both a QString and a QByteArray version of our full text (#2284). We are only dealing with the QByteArray version, which means that we don't have to convert QByteArrays to QStrings anymore (in fullTextPosition()), something that was very time consuming. This also resulted in a lot of cleaning up and of minor speedups here and there. commit 21239582b49561cb54200265ce41316d9bf3a9e4 Author: Alan Garny Date: Fri Jan 31 12:35:47 2020 +1300 Some minor cleaning up. commit ac0d29f911a3660c28ab5395540f2c46d0c2b0c1 Author: Alan Garny Date: Fri Jan 31 12:21:56 2020 +1300 CellML Text view: slight improvements to our lexer (#2284). commit 0216e99a430b54f206d9950abf2364ad385f414f Author: Alan Garny Date: Fri Jan 31 12:04:52 2020 +1300 Some minor cleaning up. commit 51f6a97744f5c612f21761d3100a49e9534249e3 Author: Alan Garny Date: Fri Jan 31 11:08:59 2020 +1300 Some minor cleaning up. commit c3ce2ac4837cb46f529e44be9f84009ef8dd3863 Author: Alan Garny Date: Fri Jan 31 10:59:01 2020 +1300 CellML Text view: slight improvements to our lexer (#2284). Also some minor cleaning up. commit 81bb8c1488367539e4e2ce19e54f81bc68bb3ad7 Author: Alan Garny Date: Fri Jan 31 10:01:27 2020 +1300 CellML Text view: some minor refactoring of our lexer code (#2284). commit d73a54485c01208eb7684bf82517850ddecdd7c0 Author: Alan Garny Date: Fri Jan 31 09:53:07 2020 +1300 CellML Text view: increased the size of chunk of text to style (#2284). commit 7f6a53f93d31df99243aae1b0fe7d7cceb4c126d Author: Alan Garny Date: Fri Jan 31 09:35:45 2020 +1300 Some minor cleaning up. commit 64610d43be70e308db0bfd6d52a88f00ef8e767e Author: Alan Garny Date: Thu Jan 30 18:11:26 2020 +1300 CellML Text view: style a CellML file in chunks (#2284). This means that for very big CellML file we don't end up with OpenCOR using GBs of RAM. commit b7b8acbe1ece19b7fca6dd284d9f6854218c918c Author: Alan Garny Date: Thu Jan 30 16:48:43 2020 +1300 CellML Text view: slight improvement to our lexer. commit 9eda696887ae28099e87c1f97f83f9f5f4bba069 Author: Alan Garny Date: Wed Jan 22 12:44:18 2020 +1300 Some minor cleaning up. commit c1cd761b145f60d4549cf42070077938312c041a Merge: d7d77df76 bed39e642 Author: Alan Garny Date: Wed Jan 22 12:32:54 2020 +1300 Removed references to team@opencor.ws commit bed39e64298d00c7e17179a94981b0aa56127a47 Author: Alan Garny Date: Wed Jan 22 11:41:21 2020 +1300 Removed references to team@opencor.ws. commit d7d77df769da0b956aa7deebf72f614765d8d4f4 Merge: 96a6abb8e c5d7dc98c Author: Alan Garny Date: Tue Jan 21 07:50:53 2020 +1300 New snapshot. commit c5d7dc98c3fca501eabd84428ec2c0323e46e984 Author: Alan Garny Date: Mon Jan 20 18:17:24 2020 +1300 Slight update to our downloads script and page. ... to account for the fact that we are now distributing a `.pkg` file on macOS rather than a `.dmg` one. commit a25d418df660a87c0cfad8be5cff8584885d2d07 Author: Alan Garny Date: Mon Jan 20 18:03:33 2020 +1300 New snapshot. commit 96a6abb8eaba27979551188c066d5f50cafe2b47 Merge: 95ee8d53f ea951951c Author: Alan Garny Date: Mon Jan 20 18:01:04 2020 +1300 Fixed an issue with reloading a SED-ML file / COMBINE archive potentially crashing OpenCOR (closes #2290). commit ea951951c5081625bb382066eb1c29be1b10a4ee Author: Alan Garny Date: Mon Jan 20 17:09:10 2020 +1300 Slight update to our downloads page (#2290). commit 5a9ab30a2b034152d9a9fbd643c3b29476db4e0c Author: Alan Garny Date: Mon Jan 20 17:04:48 2020 +1300 Simulation Experiment view: improved the way we check graph panels and graphs. commit f92f607a3d92db7bb2af9e790f58c58f8700ea5b Author: Alan Garny Date: Mon Jan 20 16:08:24 2020 +1300 Fixed an issue with the reloading of a SED-ML file / COMBINE archive potentially crashing OpenCOR (#2290). commit dd6341da28e38249aa258b0cdf0a2896816dcbfc Author: Alan Garny Date: Mon Jan 20 13:38:30 2020 +1300 Some minor cleaning up. commit 95ee8d53f1b79d85b8d0fabec91df46ecbab38a9 Merge: b504b488b c4f8ad400 Author: Alan Garny Date: Mon Jan 20 12:42:31 2020 +1300 Removed support for Windows 7 (closes #2288). commit c4f8ad40011c755713785ea8a32c91871ab6c0bd Author: Alan Garny Date: Mon Jan 20 11:59:36 2020 +1300 Removed support for Windows 7 (#2288). commit b504b488b84292719d8e050962f43260fbc5d683 Merge: 391bbc7d5 369d3e80b Author: Alan Garny Date: Fri Jan 17 20:00:04 2020 +1300 General: provided a shortcut to reload a file (closes #2286). commit 369d3e80b0f616c811dedba3855c70e0e27cedd8 Author: Alan Garny Date: Fri Jan 17 12:05:21 2020 +1300 Slight update to our downloads page (#2286). commit 4ed81feeada6c750342694e5361a1a2f0e228780 Author: Alan Garny Date: Fri Jan 17 12:01:20 2020 +1300 General: provide a shortcut to reload a file (#2286). commit 391bbc7d546ecf0b7dfee78544dee6e0d9cf2193 Merge: 6e30e6fc3 d638b6f44 Author: Alan Garny Date: Fri Jan 17 10:07:11 2020 +1300 Mesa: upgraded to version 19.3.2 (closes #2281). commit d638b6f4417d97946dcde314435ae9183d5b974d Merge: 020aa50a9 6e30e6fc3 Author: Alan Garny Date: Thu Jan 16 16:16:43 2020 +1300 Merge branch 'master' into issue2281 commit 6e30e6fc3f01590bd641922beb00c8d20d01dc9d Author: Alan Garny Date: Thu Jan 16 16:07:00 2020 +1300 Some minor cleaning up. commit 020aa50a98d8b86697c3f7955301b286f357dab3 Author: Alan Garny Date: Thu Jan 16 15:35:31 2020 +1300 Slight update to our downloads page (#2281). commit d89f5b39f21531e70ce30e32f010ff5d7dc81c05 Author: Alan Garny Date: Thu Jan 16 15:32:17 2020 +1300 Mesa: keep using SCons (#2281). They moved to meson, but not sure how to get the same build as with SCons, so keep using it for now. commit 312527e66e8dc2524de3ac8e8633596ea3f00d65 Author: Alan Garny Date: Thu Jan 16 15:30:30 2020 +1300 Mesa: binary for version 19.3.2 (#2281). commit be01355b3ef645fa25909950d47a3f4351cc9f73 Author: Alan Garny Date: Thu Jan 16 15:20:45 2020 +1300 Revert "Mesa: require meson to build rather than SCons." This reverts commit 3476b706803f102549fffbaf4d0f5ce130f118d8. commit 0d73f1026dd81197bd3244979e9f438edfa0d4ce Merge: 3476b7068 303641f39 Author: Alan Garny Date: Thu Jan 16 14:51:45 2020 +1300 Merge branch 'master' into issue2281. commit 3476b706803f102549fffbaf4d0f5ce130f118d8 Author: Alan Garny Date: Thu Jan 16 14:51:12 2020 +1300 Mesa: require meson to build rather than SCons. commit 303641f39886ba77ce63284bf8880645e63153cc Merge: 6bea32568 857a122fa Author: Alan Garny Date: Thu Jan 16 14:50:04 2020 +1300 libgit2: upgraded to version 0.28.4 (closes #2280). commit 1971a27e4664938089469069e0518e6840d58ea8 Author: Alan Garny Date: Thu Jan 16 14:36:53 2020 +1300 Mesa: upgraded to version 19.3.2 (#2281). commit 857a122fa02577f8e027048e62da7e530b8e6771 Author: Alan Garny Date: Thu Jan 16 14:10:54 2020 +1300 Slight update to our downloads page (#2280). commit bc0eec0be542c51cd3b968246dc6651bf1cb47a9 Author: Alan Garny Date: Thu Jan 16 14:10:42 2020 +1300 libgit2: binaries for version 0.28.4 (#2280). commit 3ef762b554ff6242ea2c560433b43904ddb98732 Author: Alan Garny Date: Thu Jan 16 13:56:19 2020 +1300 libgit2: upgraded to version 0.28.4 (#2280). commit a9d1b70ec162191c8655de9350b1d1695bdeb693 Author: Alan Garny Date: Thu Jan 16 12:54:54 2020 +1300 Oxygen icons: use a hard copy rather than symbolic links. commit 7f7e59626d03e937657f3291cb8eb824c531a318 Author: Alan Garny Date: Thu Jan 16 12:20:55 2020 +1300 Oxygen icons: use symbolic links rather than a hard copy. commit 6bea3256818af5ef8a933fb89ad3c57904d7cbb0 Author: Alan Garny Date: Thu Jan 16 11:02:36 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). commit f321c5aa0034710b112ce3b478e09bfb28bf1b78 Merge: 5d0d1ec81 9ff984bb2 Author: Alan Garny Date: Thu Jan 16 10:21:53 2020 +1300 Simulation Experiment view: fixed a small GUI glitch on macOS (closes #2277). commit 9ff984bb2688bdd265d7936649d0d0a13829fe33 Author: Alan Garny Date: Thu Jan 16 09:47:58 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). commit 1b216483b70e902c5d5b159eeacc62b9cb281aa3 Author: Alan Garny Date: Wed Jan 15 18:39:52 2020 +1300 Slight update to our downloads page (#2277). commit 23211d4788da298d5d7e4d67ea6279425b56749a Author: Alan Garny Date: Wed Jan 15 18:37:49 2020 +1300 Simulation Experiment view: fixed a slight GUI glitch on macOS (#2277). Also cleaned up the relative size of different resizable widgets. commit 5d0d1ec8119de7a27c4e4a22045a8b4171379c23 Merge: bdf3b0334 7a6b811b1 Author: Alan Garny Date: Wed Jan 15 15:02:17 2020 +1300 Packaging: only distribute a `.pkg` file rather than a `.dmg` file that contains our `.pkg` file (closes #2275). commit 7a6b811b152e2fa64ec97636503d03f57bb64332 Author: Alan Garny Date: Wed Jan 15 14:27:22 2020 +1300 Packaging: only distribute a `.pkg` file rather than a `.dmg` file that contains our `.pkg` file (#2275). commit 5b368105c5393ba07e0a4e0ab51e416906d41a38 Merge: 4944c0c0f bdf3b0334 Author: Alan Garny Date: Wed Jan 15 09:35:03 2020 +1300 Merge remote-tracking branch 'upstream/master'. commit bdf3b0334ef224b9284d062c8e357f1a1f1f4e55 Author: Alan Garny Date: Wed Jan 15 09:34:40 2020 +1300 Simulation Experiment view: updated our French translations. commit 4944c0c0f810fbbf7bcbcb711922136c66edd671 Merge: d719f1765 d3da38638 Author: Alan Garny Date: Tue Jan 14 23:32:43 2020 +1300 Merge branch 'master' of https://github.com/agarny/opencor. commit d719f17654689630be578dae3fc4abcc8238fb4f Author: Alan Garny Date: Tue Jan 14 23:31:15 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel (closes #2271). commit ec4c41edb73eb6abe4f090f5bb18b38271ab5069 Merge: 680720ba2 2242d93e0 Author: Alan Garny Date: Tue Jan 14 23:29:28 2020 +1300 Simulation Experiment view: can now customise the font size of the different bits of text in a graph panel (closes #2271). commit 2242d93e0085c7836b2b66c39da0ae6db4e40112 Merge: 197463622 680720ba2 Author: Alan Garny Date: Tue Jan 14 22:33:03 2020 +1300 Merge branch 'master' into issue2271 commit 197463622581c9b411809c41d34d3929f082fbec Merge: 1a4f60e14 d3da38638 Author: Alan Garny Date: Tue Jan 14 20:13:50 2020 +1300 Merge branch 'master' into issue2271. commit d3da38638022c4904ecd1b322745cac987deb396 Author: Alan Garny Date: Tue Jan 14 20:05:19 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (closes #2272).. commit 680720ba2246cad4078efa7ed79cc05fb3b84740 Merge: 1f56f742c 6a53a6c38 Author: Alan Garny Date: Tue Jan 14 20:04:01 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (closes #2272). commit 6a53a6c386a86455dbea64f36b1df1eeab3f9b84 Author: Alan Garny Date: Tue Jan 14 15:51:29 2020 +1300 Slight update to our downloads page (#2272). commit f6f154bf858dd351c90813b6003bfa30816892fc Author: Alan Garny Date: Tue Jan 14 15:46:05 2020 +1300 SUNDIALS: binaries for version 5.1.0 (#2272). commit 039a714e147112c9d50c7dcc89c80ec28c894bee Author: Alan Garny Date: Tue Jan 14 15:36:56 2020 +1300 SUNDIALS: upgraded to version 5.1.0 (#2272). commit 1a4f60e149696383fe124a3e3fd7d05222d4fd6c Author: Alan Garny Date: Tue Jan 14 13:02:59 2020 +1300 Slight update to our downloads page (#2271). commit 01e574239899b9c202629a882b8ce726477d095c Author: Alan Garny Date: Tue Jan 14 12:52:47 2020 +1300 Keep track of our old plot 2d annotation SED-ML files (#2271). ... and updated our SED-ML files and COMBINE archives. commit 41c85a2a2d327c3b0624300abe311d7181c6c259 Author: Alan Garny Date: Tue Jan 14 12:34:43 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes (#2271). commit a8f292b167509682b6491aba00263416a84c9305 Author: Alan Garny Date: Tue Jan 14 12:23:32 2020 +1300 Graph panel widget: can now customise the font size of the (main) title (#2271). commit 6569e617dedb0123470befc38f9dae0217b87ccd Author: Alan Garny Date: Tue Jan 14 12:22:09 2020 +1300 Some minor cleaning up. commit 302700f04fe67ddce071c3274615b3466cce28bc Author: Alan Garny Date: Tue Jan 14 10:50:22 2020 +1300 Some minor cleaning up. commit 292c89263cdccf2e9d10763b03bdb4aa1d26070a Author: Alan Garny Date: Mon Jan 13 17:13:03 2020 +1300 Simualtion Experiment view: make sure that everything is in the OpenCOR namespace. commit 0fc539b0a1790efe7f8dd5bc05b077a72122b7d1 Author: Alan Garny Date: Mon Jan 13 16:57:19 2020 +1300 Some minor cleaning up. commit 97d01e644e8e4f917ce89a5b9f5c9730684d5063 Author: Alan Garny Date: Mon Jan 13 16:53:32 2020 +1300 Graph panel widget: can now customise the font size (and visibility) of a legend (#2271). commit d634b833cee3d00f48dfcb7fde9e560606318b6f Author: Alan Garny Date: Mon Jan 13 16:48:38 2020 +1300 Simualtion Experiment view: always initialise a property that we add. This is just to be on the safe side. commit b68a8630524dfa692dbc644274ee93189b23d863 Author: Alan Garny Date: Mon Jan 13 15:25:43 2020 +1300 Some minor cleaning up. commit 92d7c0ac12c606b6deba0b8f105a35e329438742 Author: Alan Garny Date: Mon Jan 13 15:19:01 2020 +1300 Some minor cleaning up. commit b13ec7460caed223d5b1d37f21873acde9dbb45e Author: Alan Garny Date: Mon Jan 13 14:24:18 2020 +1300 Some minor cleaning up. commit bcb69db60d9e3cabc8edb72fc861e0cf11e7384b Author: Alan Garny Date: Mon Jan 13 14:02:36 2020 +1300 Some minor cleaning up. commit 8e7bdadeff7a6930ebd469b9a12d8c6c67bbee0d Author: Alan Garny Date: Mon Jan 13 13:56:03 2020 +1300 Graph panel widget: can now customise the font size of our X and Y axes (#2271). commit e7f3337b7967c7a4071d839958d4ac41f2831039 Author: Alan Garny Date: Fri Jan 10 15:59:08 2020 +1300 Some minor cleaning up. commit 7659db0b1bae3e35be4422ef5caf68db360d9ffc Author: Alan Garny Date: Fri Jan 10 15:37:10 2020 +1300 Graph panel widget: can now customise the font size of point coordiantes and zoom region coordinates (#2271). commit 771e55ba5091c8fa7252c139c690d7bc4c8f0021 Author: Alan Garny Date: Fri Jan 10 15:29:18 2020 +1300 Some minor improvement. commit ed5fa0320fb3c7bde2e651acadfcaeae3c2655cb Author: Alan Garny Date: Fri Jan 10 11:50:39 2020 +1300 Models: slight updates to our SED-ML files and COMBINE archives. commit 7f9a09e42642b62d9723a61f63e524241bcd9dd9 Author: Alan Garny Date: Thu Jan 9 16:48:28 2020 +1300 Models: renamed a couple of COMBINE archives. commit 1f56f742cb1b3c33da9c432569bc266111f94312 Author: Alan Garny Date: Wed Jan 8 17:30:33 2020 +1300 Packaging: simplified things on macOS. commit e75a1fa617d90fff232bea84fec4f179f1e268bd Merge: dba70c3a8 99661a5f7 Author: Alan Garny Date: Fri Jan 3 16:46:49 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 (closes #2269). commit 99661a5f73f26ca1c7b3166be95599cc807b9c94 Author: Alan Garny Date: Fri Jan 3 16:13:18 2020 +1300 Slight update to our downloads page (#2269). commit a4b1705fed94dc8b4c367ea8d34b23f62b721f3a Author: Alan Garny Date: Fri Jan 3 16:11:37 2020 +1300 LLVM+Clang: binaries for version 9.0.1 (#2269). commit e8543df8489f341930b5271dbdc174035619063e Author: Alan Garny Date: Fri Jan 3 12:59:51 2020 +1300 LLVM+Clang: upgraded to version 9.0.1 (#2269). commit dba70c3a8b650d0a2edfe673134d9d512d9b59a3 Merge: ea3202727 1610308a7 Author: Alan Garny Date: Sat Dec 21 20:04:41 2019 +1300 Fixed a small issue with our splash screen window on Windows. Also, some minor cleaning up. commit 1610308a74d719abd1586f2365f9a66c84772f24 Author: Alan Garny Date: Sat Dec 21 18:58:25 2019 +1300 Splash Screen window: make sure that OpenCOR has been initialised on Windows. Indeed, on Windows, we never try the CLI version of OpenCOR (since we have a special main.cpp for it), which means that OpenCOR was not initialised as an application prior to showing our splash screen. commit adc6df3641f3bd4c7776c7756e421de72f2e9031 Author: Alan Garny Date: Sat Dec 21 18:58:01 2019 +1300 Splash Screen window: renamed our closeAndDeleteAfter() to deleteLater(). ... since we don't close and delete anymore, but only delete. commit e146b5f8ce3ac478e31253952f22ec126da78bd1 Author: Alan Garny Date: Sat Dec 21 18:48:22 2019 +1300 Some minor cleaning up. commit ea3202727c1cefdff6fbbb14259e35ccc16811e2 Merge: 72b342448 fc56dce00 Author: Alan Garny Date: Fri Dec 20 19:18:21 2019 +1300 New snapshot. commit fc56dce00e028966bb5e14e1b893b67838d2de26 Author: Alan Garny Date: Fri Dec 20 14:27:38 2019 +1300 New snapshot. commit 72b34244852a75fc18edcf11e1fc6ce871f21a2b Merge: ff7164e91 9459ad5f1 Author: Alan Garny Date: Fri Dec 20 14:22:04 2019 +1300 Fixed a couple of issues with our splash screen (closes #2265). commit 9459ad5f19879bbad2d7600228848cc34507d235 Author: Alan Garny Date: Fri Dec 20 12:51:04 2019 +1300 Slight update to our downloads page (#2265). commit 4aa99de212991f1298e78d43cd33acc2bb1c0a40 Author: Alan Garny Date: Fri Dec 20 12:46:35 2019 +1300 Some minor cleaning up. commit 60006cd3c90b493283c7904c8b55cd8a5b27810a Author: Alan Garny Date: Fri Dec 20 12:43:13 2019 +1300 Splash screen: delete ourselves rather than closing ourselves (#2265). Since we can't close ourselves anymore. commit 9c63f0ab0312c529af0aba2bcc4eb04b79b7e31d Author: Alan Garny Date: Fri Dec 20 12:41:56 2019 +1300 Prevent the splash screen from being closed (#2265). This could indeed have happened when the splas screen appearead and we pressed Ctrl+Q before the main window would be created (and not necessarily showing). commit 9496364c10a3888684351f5f4389a61ed259de81 Author: Alan Garny Date: Fri Dec 20 11:54:23 2019 +1300 Main window: make sure that we keep track of the fact that we are about to quit (#2265). Not sure why, but this somehow got removed at some point, which means that we couldn't anymore catch when someone was closing our main window while we were showing our splash screen...! commit 1302d2822210876865d7c12fc23bc32cf8a39b5d Author: Alan Garny Date: Fri Dec 20 11:12:47 2019 +1300 Splash screen: don't hide ourselves when pressed (#2265). commit 5760de1bd396edb9808785d653ecfda5af84f736 Author: Alan Garny Date: Fri Dec 20 09:43:39 2019 +1300 Slight improvements to the way we use our splash screen (#2265). commit 94bc4e6ee92de244be1d4128c69400e7ef4acd83 Author: Alan Garny Date: Fri Dec 20 09:40:40 2019 +1300 Slight improvements to the way we use our splash screen (#2265). commit ff7164e91086d71815573c821cb51940af5d6699 Merge: 80ad6e4b9 821f3d820 Author: Alan Garny Date: Thu Dec 19 17:15:49 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled (closes #2263). commit 821f3d820b515c0d59602a40b85ada16cafb4d16 Author: Alan Garny Date: Thu Dec 19 16:43:25 2019 +1300 Slight update to our downloads page (#2263). commit 044356cb0a9e4aef1c3343223f9a8ec9d4d5eed4 Author: Alan Garny Date: Thu Dec 19 16:39:10 2019 +1300 Graph Panel widget: prevent it from flickering when it is shown as disabled (#2263). commit 80ad6e4b9242c23a14a3270405a56c3685ee3067 Merge: a1e8dd9e4 64167769d Author: Alan Garny Date: Thu Dec 19 11:53:07 2019 +1300 General: don't ask to confirm the overwriting of a file when on macOS 10.15 (closes #2261). commit 64167769dbb5326fc57aecd350bc2387476f1e4a Author: Alan Garny Date: Thu Dec 19 11:15:11 2019 +1300 Some minor refactoring. commit b17d0befa8e91d55765e19b8edbde686bb86504b Author: Alan Garny Date: Thu Dec 19 11:12:33 2019 +1300 Some minor cleaning up. commit 37cd0e1151bc22300efa2f7a0f03ed7c5dc053d2 Author: Alan Garny Date: Thu Dec 19 11:12:17 2019 +1300 Some minor cleaning up. commit 989919d938d2a8e90b2a78a47f75c218fcac7cee Author: Alan Garny Date: Thu Dec 19 11:04:33 2019 +1300 Slight update to our downloads page (#2261). commit 53b5d53951b53f5757c9a409c0b1ec2e6095f2cf Author: Alan Garny Date: Thu Dec 19 11:03:15 2019 +1300 General: don't ask to confirm the overwriting of a file when on macOS 10.15 (#2261). commit a1e8dd9e424126a2ee92002f27b588c246251466 Merge: 324d77d3c 688a7b12c Author: Alan Garny Date: Tue Dec 17 18:11:16 2019 +1300 Simulation Experiment view: can now reopen a remote CellML file from a SED-ML file (closes #2191). commit 688a7b12c43be156061888d25a713f9679141c89 Author: Alan Garny Date: Tue Dec 17 17:29:30 2019 +1300 Slight updates to our downloads and what is new pages (#2191). commit c25941143c282e3d5f0d61ff599774358f0d0c86 Merge: 2967feaa7 324d77d3c Author: Alan Garny Date: Tue Dec 17 17:18:48 2019 +1300 Merge branch 'master' into issue2191. commit 324d77d3c41c27515eed62dd0e825ce18b13c0bb Merge: be92b58b4 10447c14b Author: Alan Garny Date: Tue Dec 17 17:16:10 2019 +1300 QtWebKit: upgraded to v5.212.0-alpha3 (#2252). commit 2967feaa76e4b15a1c8623763f0ae28a8bdaf0fd Author: Alan Garny Date: Tue Dec 17 17:14:33 2019 +1300 Simulation Experiment view: make sure that we can reopen a remote CellML file from a remote SED-ML file (#2191). commit 10447c14b510c622d2a248ac32b480514d4ee16f Author: Alan Garny Date: Tue Dec 17 16:39:49 2019 +1300 Slight updates to our downloads pages (#2252). commit 4604764d735c4b030d31f8bfc88419ac17b7db6f Author: Alan Garny Date: Tue Dec 17 16:33:48 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 (#2252). commit 297e694dd40b9ad19e18d90777845f8193f7f4a6 Author: Alan Garny Date: Tue Dec 17 16:20:02 2019 +1300 Some minor cleaning up. commit 3e6850ff8c404ede23e781c42e338444b2a4fad1 Author: Alan Garny Date: Tue Dec 17 10:52:26 2019 +1300 QtWebKit package: fixed a small problem in our CMakeLists.txt file (#2252). commit 5aa68df8755b203e3bfb727703c8507bff6714b7 Merge: a84489df6 be92b58b4 Author: Alan Garny Date: Mon Dec 16 17:53:26 2019 +1300 Merge branch 'master' into issue2252. commit be92b58b43a8d28875df917fbbaaf69b2fcffa1c Author: Alan Garny Date: Mon Dec 16 17:52:25 2019 +1300 Common widget: slight improvement to our hideBusyWidget() method. Now, we can really see the final state of a progress busy widget. commit a84489df69ceec44dbe9baa78b6636ba5f31ef78 Author: Alan Garny Date: Mon Dec 16 16:27:01 2019 +1300 QtWebKit: binaries for v5.212.0-alpha3 (#2252). commit ab28d7e20ed271b3a1c44c1e1f566ba81dc112b0 Author: Alan Garny Date: Mon Dec 16 16:26:35 2019 +1300 Don't only build QtWebKit (#2252). commit 890f711a114ab2cc4f87c6cb7cf4d1770a4fb584 Author: Alan Garny Date: Mon Dec 16 15:40:07 2019 +1300 QtWebKit: make sure that we use the correct release tag (#2252). commit 192a0c26c5a1fe28c69474fa21c6137b8a9a2364 Merge: e33783d06 539c7fcb1 Author: Alan Garny Date: Mon Dec 16 15:37:07 2019 +1300 Merge branch 'master' into issue2252. commit e33783d06f946affd91ff9efa0ec531837defddf Author: Alan Garny Date: Mon Dec 16 13:36:54 2019 +1300 Partially reverting commit cc29b06. We tried to optimise things a bit too much, but for example we need ICU on Linux to build QtWebKit! commit 539c7fcb13e100ff4e8a51e5f69978457777093a Merge: 76a1ffc47 ae303c434 Author: Alan Garny Date: Fri Dec 13 18:33:02 2019 +1300 New snapshot. commit ae303c4342362f46493a20ddbd4e7504622c57e2 Author: Alan Garny Date: Fri Dec 13 16:04:49 2019 +1300 Some minor cleaning up. commit fa7aec731caa68d68525815e42c5540ca4ababe3 Author: Alan Garny Date: Fri Dec 13 14:11:14 2019 +1300 New snapshot. commit 76a1ffc4777f7fcc656e4f7b5954096e524d4a7f Merge: afe3b538f 8650758b3 Author: Alan Garny Date: Fri Dec 13 14:07:01 2019 +1300 Python package: updated our macOS binary (closes #2256). commit 8650758b3ebddcf5920b4a72c3ac99b5b3a8d669 Author: Alan Garny Date: Fri Dec 13 13:28:48 2019 +1300 Python support: added a test to ensure that we can import all the modules that we should have (#2256). commit 6fccf814ed1d14f6ac6ffb3e509122ef001535eb Author: Alan Garny Date: Fri Dec 13 11:19:50 2019 +1300 Python package: update our macOS binary (#2256). The old one didn't contain lzma! commit afe3b538fcd89157f6e007b54308779acadd32c4 Merge: 9f90a3b16 a377cd5c9 Author: Alan Garny Date: Thu Dec 12 21:55:03 2019 +1300 Python support: added some Python-based tests (closes #2178). commit a377cd5c931583f5ddc3e7aecbac19bded2bfd53 Author: Alan Garny Date: Thu Dec 12 19:34:17 2019 +1300 Python support: test results for a Windows debug are different on different machine (#2178). So, using the test results from our CI machine. Ridiculous! commit b3baf3f2efda1580490fd2e55ad7df414db23861 Author: Alan Garny Date: Thu Dec 12 18:55:14 2019 +1300 Python support: test results for a Windows release are different on different machine (#2178). So, using the test results from our CI machine. Ridiculous! commit aa710320468867f514d9f74b046dbbf4b3c932ab Author: Alan Garny Date: Thu Dec 12 18:14:10 2019 +1300 Python support: distinguish between the release and debug versions of our test results (#2178). And yes... not only are there slight differences between platforms, but also between targets! commit 26237e2eefb2816ed115ab98e277387af33061c1 Author: Alan Garny Date: Thu Dec 12 17:41:15 2019 +1300 Python support: test results for Windows and Linux (#2178). commit 99ca2373ed7f42a7d5fcd9ec1cc2241c87ac6c2d Author: Alan Garny Date: Thu Dec 12 17:26:10 2019 +1300 Python support: have our tests use the results for the current platform (#2178). commit 1ba1c577f85b9b7bcc78897a3d2f37c7bf679ac8 Author: Alan Garny Date: Thu Dec 12 17:25:08 2019 +1300 Python support: added platform-specific expected results (#2178). Still need to update our Windows and Linux ones though. commit db315e658f62474b3bf2b840454419824678508a Author: Alan Garny Date: Thu Dec 12 17:13:31 2019 +1300 Python support: use full accuracy for numbers (#2178). Indeed, we are having problems with our release version on Windows, which would require a one significant digit accuracy to get our tests to pass. This is clearly ridiculous, so instead we are going to use full accuracy and then distinguish between our platforms...! commit ee49c7cfa29af8a1fa46282757d48594322e049e Author: Alan Garny Date: Thu Dec 12 15:46:01 2019 +1300 Python support: addresses issues from codefactor (#2178). See https://www.codefactor.io/repository/github/opencor/opencor/pull/2255. commit c2e8949a1d3dfb2e9fb1602b9c0b94a7c6f9deb5 Author: Alan Garny Date: Thu Dec 12 15:26:15 2019 +1300 Slight update to our downloads page (#2178). commit 6c7100faf9118bd033d1b1d39eebf3356e2bc91a Author: Alan Garny Date: Thu Dec 12 15:10:53 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI (e.g. using a Python script) on Windows (#2178). See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit e53c9630519357b6f88609af0cacbdb1a90400f2 Author: Alan Garny Date: Thu Dec 12 14:43:12 2019 +1300 Some minor cleaning up. commit 370c593eeac26225fc03619d4ccab00d4cc21629 Author: Alan Garny Date: Thu Dec 12 14:29:39 2019 +1300 Python support: addressed an issue with running a DAE model without a GUI (e.g. using a Python script) on Windows (#2178). See https://github.com/opencor/opencor/issues/2178#issuecomment-564806410. commit bd6864f5718a80b66cdf6a9ddf7f094c6e8fbeb8 Author: Alan Garny Date: Thu Dec 12 10:20:10 2019 +1300 Python support: test our numerical results using two significant digits (#2178). Three significant digits are indeed still too much. commit fccf5d06786555134c38bd27f3641699cbfe6881 Author: Alan Garny Date: Thu Dec 12 10:15:21 2019 +1300 Python support: test our numerical results using three significant digits (#2178). commit 783d965e695520034a1d9e4d4b22828750894000 Author: Alan Garny Date: Thu Dec 12 10:06:01 2019 +1300 Python support: quickly test the full extent of differences in numerical results between platforms (#2178). commit c56a8cb4afcd54e10f888bf2f8642b3536578d8d Author: Alan Garny Date: Thu Dec 12 09:29:24 2019 +1300 Data store interface: got rid of all our assertions. Indeed, although those methods are not officially part of our Python wrappers, they could still be called from Python. So, we need to ensure that they don't cause problems (if the original assertion was to be false), which is what we are already doing for methods that are officially part of our Python wrappers. commit 7fc8976ec19f37b98455a47310810c11a820413c Author: Alan Garny Date: Wed Dec 11 20:23:39 2019 +1300 Python support: fixed a small Unicode (?) problem in one of our tests (#2178). This was failing on Windows. commit d1661b78f9fdeea534ac28c2ba45fb888de856ff Author: Alan Garny Date: Wed Dec 11 20:20:15 2019 +1300 Python support: use 2-digit precision for our Python values (#2178). Indeed, 3 digits still raises issues between platforms! commit 09e26c4e714c528eb44b4f241508bcc277bfd2c2 Author: Alan Garny Date: Wed Dec 11 19:35:43 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit 90625cfe9b21626a48873083af257ad1a1878b08 Author: Alan Garny Date: Wed Dec 11 19:27:28 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit d82945952b821c70b0ca7f193b1afa2361932121 Author: Alan Garny Date: Wed Dec 11 19:14:09 2019 +1300 Python support: replace -0.000 with 0.000 when printing numbers in our Python tests (#2178). This was indeed causing problems between platforms. commit e32290a9e0c4294b4e7aecc08cf6efd5fa54a539 Author: Alan Garny Date: Wed Dec 11 19:03:43 2019 +1300 Python support: slight update to our the number of digits we want to print our Python tests (#2178). This is so that we don't floating rounding issues between platforms. commit f65d47464b6ceaa3b115318f5a690ffb30e9c049 Author: Alan Garny Date: Wed Dec 11 18:47:38 2019 +1300 Python support: reorganised our Python tests (#2178). So that we can run every test individually, if needed. commit 7ee92f1e50212594907585cc09f11f07fb9e3552 Author: Alan Garny Date: Wed Dec 11 18:31:24 2019 +1300 Python support: some minor refactoring of our Python tests (#2178). commit 955c6f3b87a3aa2a1dd7fb94312e0e82c1b29e94 Author: Alan Garny Date: Wed Dec 11 18:22:05 2019 +1300 Some minor cleaning up. commit 90c89351e26552d1a8367900c1e28e8c18d309fd Author: Alan Garny Date: Wed Dec 11 18:15:56 2019 +1300 Python support: added Python tests for vdP28 (#2178). commit e5ec9ad95f6ffe9b8dd33fc3eb5cc48c80b7402a Author: Alan Garny Date: Wed Dec 11 18:12:20 2019 +1300 Python support: added Python tests for N62 (#2178). commit 62de089f09a8356e1a9da9e5f6e6aa24168d5460 Author: Alan Garny Date: Wed Dec 11 18:06:03 2019 +1300 Python support: added Python tests for HH52 (#2178). commit fa7c7b6e3e8b1f1d1a688da7767ad73db7809e1c Author: Alan Garny Date: Wed Dec 11 17:54:14 2019 +1300 Some minor cleaning up. commit 0ae900b48c63e5f11aa30144d3f1282b9f397b6c Author: Alan Garny Date: Wed Dec 11 17:47:51 2019 +1300 Some minor cleaning up. commit 9fa25ec26f024b44cb3277340487c9b4c1dd8042 Author: Alan Garny Date: Wed Dec 11 17:27:26 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 9140a7a64254e30f515fee68f004ab0971c0b7c3 Author: Alan Garny Date: Wed Dec 11 17:08:07 2019 +1300 Python support: some minor refactoring of our coverage tests (#2178). commit e8e37e83af6a23da98b280a7716667d1dc65a55a Author: Alan Garny Date: Wed Dec 11 16:55:08 2019 +1300 Python support: have our coverage testing use a DAE model (#2178). commit 19a86396f4d2d848f106f8caffd01d4a45ffc547 Author: Alan Garny Date: Wed Dec 11 16:51:56 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 23d2eff396eda2439d8111040732a8425d978386 Author: Alan Garny Date: Wed Dec 11 16:31:21 2019 +1300 Some minor cleaning up. commit a19099d6a6e662ec1cd4fdacbc93445c12004124 Author: Alan Garny Date: Wed Dec 11 16:28:16 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit cb20f42a69dcf4f28adff4cb080f4ab39d8dcc42 Author: Alan Garny Date: Wed Dec 11 16:27:48 2019 +1300 Some minor cleaning up. commit 5ead3a6bc5514b0131409cf35e1d374284ab1621 Author: Alan Garny Date: Wed Dec 11 16:13:54 2019 +1300 Some minor cleaning up. commit e993f61e886c8ce037ef4bf64eca3fb8b4d3c730 Author: Alan Garny Date: Wed Dec 11 16:06:30 2019 +1300 Some minor cleaning up. commit ae158e4e017346c88e4a191a93581f3af8bf9b45 Author: Alan Garny Date: Wed Dec 11 16:04:14 2019 +1300 Some minor cleaning up. commit f7b5c421fe645ac94a99410c74853710b967285a Author: Alan Garny Date: Wed Dec 11 16:01:20 2019 +1300 Simulation support: added ode_solver_property() and nla_solver_property() as Python wrappers to our SimulationData class (#2178). commit 2ae3ee04a199d866ac45126ecd843f27127ae266 Author: Alan Garny Date: Wed Dec 11 15:57:56 2019 +1300 Some minor cleaning up. commit 225b1932776fa50f9e48747222a4e4eef3f4e97a Author: Alan Garny Date: Wed Dec 11 15:23:38 2019 +1300 Python support: some work on coverage testing SimulationData (#2178). commit 02fef2bcb89d587bce306ee90dfba6ea80903b3f Author: Alan Garny Date: Wed Dec 11 14:56:12 2019 +1300 Simulation support: added set_value() as a Python wrapper to our DataStoreValue class (#2178). commit 1f82a3acab539bf4754c870881194ee6a569b7e8 Author: Alan Garny Date: Wed Dec 11 14:55:31 2019 +1300 Some minor cleaning up. commit fab624e9030b02aca21a74508d80c980f99b9502 Author: Alan Garny Date: Wed Dec 11 14:12:05 2019 +1300 Some minor cleaning up. commit d258aa27e14f147129ed13e75cec4b7b2c4f232f Author: Alan Garny Date: Wed Dec 11 14:10:28 2019 +1300 Some minor cleaning up. commit 48c203a24949ac80517a0a9c50ad36106ebe71fa Author: Alan Garny Date: Wed Dec 11 13:44:33 2019 +1300 Some minor cleaning up. commit d9bb208208dfd4f954dee971e8e1cb85ec0ac709 Author: Alan Garny Date: Wed Dec 11 13:24:49 2019 +1300 Python support: renamed our edge tests to coverage tests (#2178). commit a04843cc1d1b76d91489de3def7df6e719ce253b Author: Alan Garny Date: Wed Dec 11 13:19:43 2019 +1300 Python support: some work on edge testing of DataStore (#2178). commit efaa317ea16c38a1373dfba4605ce2c23ea59c0d Author: Alan Garny Date: Wed Dec 11 13:19:07 2019 +1300 Some minor cleaning up. commit 583cb968d12723c0a084ea5e43a1f69039f17d5a Author: Alan Garny Date: Wed Dec 11 13:10:14 2019 +1300 Some minor cleaning up. commit 980b0f9a334c4c9fa1e19e2eb12eb334317ca1af Author: Alan Garny Date: Wed Dec 11 12:51:00 2019 +1300 Python support: some work on edge testing a list of DataStoreVariable items (#2178). commit 0455b2fe7421123e70b1024860fa46fcbae66fb6 Author: Alan Garny Date: Wed Dec 11 12:48:08 2019 +1300 Some minor cleaning up. commit dd9c541a349087596baa1c31d6762cc81a26dff2 Author: Alan Garny Date: Wed Dec 11 12:19:22 2019 +1300 Simulation support: added runs_count() and values_count() as Python wrappers to our DataStoreVariable class (#2178). commit 665c98c563ec5379e28cad13cb39f31d08f1614f Author: Alan Garny Date: Wed Dec 11 11:24:16 2019 +1300 Python support: some work on edge testing DataStoreVariable (#2178). commit f5322cb27087435812c414ad0282cd2e5de7c9ef Author: Alan Garny Date: Wed Dec 11 11:15:58 2019 +1300 Some minor cleaning up. commit 390a60bb725de2f497827190c89ccbfe93d74f30 Author: Alan Garny Date: Wed Dec 11 11:06:56 2019 +1300 Python support: some work on edge testing DataStoreVariable (#2178). commit 3881439c5a352b8bcd45572f737b812d05e139c4 Author: Alan Garny Date: Tue Dec 10 19:19:22 2019 +1300 Python support: make sure that we ask to open a valid and existing file (#2178). commit c7445148322eb2bc5f3a509e0b8e44daab860ddd Author: Alan Garny Date: Tue Dec 10 19:04:13 2019 +1300 Some minor cleaning up. commit 48cae8d0c06135132911bbdca701d543c17269d7 Author: Alan Garny Date: Tue Dec 10 18:42:03 2019 +1300 Some minor cleaning up. commit 2f37e071d2182df541e91ee0fc1da599adb74369 Author: Alan Garny Date: Tue Dec 10 18:20:12 2019 +1300 Python support: partially reverted commit ea352e4b2 (#2178). Indeed, we could (obviously!) not run our script from the Python Console window, only from the command line. commit 04951dd2f9e344d7d7332e653017420d10949969 Author: Alan Garny Date: Tue Dec 10 18:02:07 2019 +1300 Some minor cleaning up. commit 40c61b757a01523c32db9696a69ba648b60c4050 Author: Alan Garny Date: Tue Dec 10 17:50:05 2019 +1300 Python support: some minor refactoring our basic tests script (#2178). commit d0d1b3e79a93c4cad6995a575c444a3cccb8f632 Author: Alan Garny Date: Tue Dec 10 17:47:14 2019 +1300 Python support: prevent the creation of a .pyc file for our imported basictests module (#2178). commit ee49d3893f2eefcef164ae4b8c53de768c7d2e42 Author: Alan Garny Date: Tue Dec 10 17:42:54 2019 +1300 Scripts: don't protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents [Python]/bin/jupyter (and therefore our Jupyter console, lab and notebook scripts) from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit fe23804be7c82ebec70ad6bca1412ddbca81d3e6 Author: Alan Garny Date: Tue Dec 10 16:59:02 2019 +1300 Python support: some minor refactoring our basic tests script (#2178). commit 1f735e2bfa9d74bc35da7eb5eba880d4d923fc78 Author: Alan Garny Date: Tue Dec 10 16:40:30 2019 +1300 Python support: renamed our basic tests file (#2178). commit 64be3b08970cb11c402211729e9b79a8edb6d53a Author: Alan Garny Date: Tue Dec 10 16:33:36 2019 +1300 Python support: added some edge tests (#2178). They come from commit 3ff8a2f03. commit 3ff8a2f03fcd1f09a03e19438791cf01d8499aac Author: Alan Garny Date: Tue Dec 10 16:26:40 2019 +1300 Pythonh support: removed some of our tests (#2178). They are going to be moved to a different Python script. commit ea352e4b258bf6e92da06f7f9a84a797b4b7a815 Author: Alan Garny Date: Tue Dec 10 16:25:35 2019 +1300 Some minor cleaning up. commit 984956e425bbd47f7c1b8869fd41947227f6c80c Author: Alan Garny Date: Tue Dec 10 15:33:33 2019 +1300 Some minor cleaning up. commit f482ee1135884e5bdf706d297e95a133a4c6d105 Author: Alan Garny Date: Tue Dec 10 15:20:50 2019 +1300 Some minor cleaning up. commit e10069e9709f567179f795b6df0bc00dc79c44f0 Author: Alan Garny Date: Tue Dec 10 14:32:53 2019 +1300 Test models: slightly changed the look of one of our curves in the Lorenz SED-ML file / COMBINE archive. commit 61b01c17da3bde9b31d4323f30acb227631b9669 Author: Alan Garny Date: Tue Dec 10 14:12:44 2019 +1300 Python support: replace Heun with Forward Euler in our test (#2178). commit 30fac6e7900535fb8ff06383202ad75bb817cc2a Author: Alan Garny Date: Tue Dec 10 13:53:59 2019 +1300 Some minor cleaning up. commit f949eda8915a54e1fed189f6ff368892e42a6086 Author: Alan Garny Date: Tue Dec 10 13:50:49 2019 +1300 Python support: use the same initial settings to test our local/remote CellML file (#2178). commit ae5411529b34ae4e0f64a7a027c91be7759be9da Author: Alan Garny Date: Tue Dec 10 13:46:51 2019 +1300 Some minor cleaning up. commit 2d493fb8e8e93793e8733ce4197ec0ee09720a64 Author: Alan Garny Date: Tue Dec 10 12:53:39 2019 +1300 Test utils: further clean up our test output (#2178). commit 921fb66171125f40007d3db32577d7c34def3722 Author: Alan Garny Date: Tue Dec 10 12:35:24 2019 +1300 Some minor cleaning up. commit e886f9cb3e5d080c155efd6a7ae2576a29ae9e57 Author: Alan Garny Date: Tue Dec 10 12:03:47 2019 +1300 Allow arguments to our runtests.bat script. commit 7bd5a6efe929ce0aec605c016f2dac67a05b32cf Author: Alan Garny Date: Tue Dec 10 12:03:28 2019 +1300 Slight improvement to our make[tests] scripts. commit c3f03c28322138334262d950a9efd03f0c2906d7 Author: Alan Garny Date: Tue Dec 10 10:56:50 2019 +1300 Test utils: further clean up our test output (#2178). commit 7f49449a989ab744aaa968c1f990c021e82ed5c2 Author: Alan Garny Date: Tue Dec 10 10:22:20 2019 +1300 Test utils: further clean up our test output (#2178). commit a96eb8c27682c7980a86e1bc62e6ad8b374316b5 Author: Alan Garny Date: Mon Dec 9 20:19:31 2019 +1300 Some minor cleaning up. commit 17cad5a74cf6b607fc868cc6b122eb052338f821 Author: Alan Garny Date: Mon Dec 9 20:14:58 2019 +1300 Simulation support: simplified our set_starting_point() Python wrrapper (#2178). commit 9a3a6df8a0e79c7627902d52230363c7f088a4bb Author: Alan Garny Date: Mon Dec 9 20:04:35 2019 +1300 Python support: some work on our Python test (#2178). commit cc2f02c5a752e1ec36b55096451384b624e24460 Author: Alan Garny Date: Mon Dec 9 20:03:46 2019 +1300 Python support: some work on our Python test (#2178). commit 96de7e79f63afc9a485e4faa15406be890888ac8 Author: Alan Garny Date: Mon Dec 9 19:58:18 2019 +1300 Simulation support: added set_[ode|nla]_solver_property() as Python wrappers (#2178). commit 87a83ec9c7e37d3ef6b396f832837056534ba484 Author: Alan Garny Date: Mon Dec 9 19:57:32 2019 +1300 Some minor cleaning up. commit 09a4f7cf0516b0afea2ae7fd2fba260a1ccd5e87 Author: Alan Garny Date: Mon Dec 9 19:49:54 2019 +1300 Simulation support: renamed our add[Ode|Nla]SolverProperty() method to set[Ode|Nla]SolverProperty() (#2178). No idea why it was called add[Ode|Nla]SolverProperty() in the first place, but what we are doing is setting and not adding, so... commit ba56f3cfc1f3685fa49b91fdd9980bb452607195 Author: Alan Garny Date: Mon Dec 9 19:45:16 2019 +1300 Simulation support: added a Pythonic method to retrieve the name of an ODE/NLA solver (#2178). commit 16fe10138bb403cdfc83988c3e9e093ad7974b31 Author: Alan Garny Date: Mon Dec 9 19:24:54 2019 +1300 Some minor cleaning up. commit c5c3b2a4db2d481b0b916caa773a2c160fcce7eb Author: Alan Garny Date: Mon Dec 9 19:18:54 2019 +1300 Python support: have our Python test output simulation results (#2178). commit b51518394a05ac385ebb3e2409a4f205a15fca98 Author: Alan Garny Date: Mon Dec 9 18:11:19 2019 +1300 Python support: some work on our Python test (#2178). commit c030b54690e9aa27f19903262348efa96ed9d8c3 Author: Alan Garny Date: Mon Dec 9 18:09:56 2019 +1300 Simulation support: added starting_point(), ending_point() and point_interval() as Python wrappers (#2178). commit c9b94d15b48357dca0a27cb99765ff41b50b97e0 Author: Alan Garny Date: Mon Dec 9 17:28:13 2019 +1300 Some minor cleaning up. commit 37d295c9316b6c01993f012218bcd05bee3d3ad0 Author: Alan Garny Date: Mon Dec 9 17:12:43 2019 +1300 Data store interface: renamed setLabel() and label() to setName() and name(), respectively. commit 4ea4845a18bdac3c5b782e299129a98bf0cdfa7b Author: Alan Garny Date: Mon Dec 9 16:41:40 2019 +1300 Some minor cleaning up. commit 4d8c55617b7c18f2ae63086a37516e06a70619ef Author: Alan Garny Date: Mon Dec 9 16:29:13 2019 +1300 Some minor cleaning up. commit 663727e73b1930106ae016e8dd08c6fa66193b91 Author: Alan Garny Date: Mon Dec 9 16:25:37 2019 +1300 Some minor cleaning up. commit e4ca20eb9660fe554cfc2bf3773b21757d73f954 Author: Alan Garny Date: Mon Dec 9 16:04:54 2019 +1300 Python support: check for an invalid local and remote file (#2178). commit 9148ea7985d691709e4d4b37b15bc10fdf821f76 Author: Alan Garny Date: Mon Dec 9 16:04:26 2019 +1300 Python support: check for the validity and issues of a simulation file (#2178). commit daa172b13634c29317494226f83f8cba4c9a2f6e Author: Alan Garny Date: Mon Dec 9 15:45:01 2019 +1300 Some minor cleaning up. commit f882ec7e833ce740c066b47fb727e5a1913db04f Author: Alan Garny Date: Mon Dec 9 15:40:22 2019 +1300 Python support: test for an unknown local and remote file (#2178). commit e79887a05d3d49ea156194270e1ed9494d3f088b Merge: d4796faf3 9f90a3b16 Author: Alan Garny Date: Mon Dec 9 15:16:04 2019 +1300 Merge branch 'master' into issue2178. commit 9f90a3b165cda3ae808c3b63bef8231bfe74ef25 Merge: 70e4b07b5 7d879a283 Author: Alan Garny Date: Mon Dec 9 15:15:20 2019 +1300 Various cleaning ups. commit d4796faf31b90c48d8193ca212a7fa167c32cdd9 Author: Alan Garny Date: Mon Dec 9 15:14:42 2019 +1300 Some minor cleaning up. commit a7e8382a89876c35b4ddea89636d7dd2b5c477cb Author: Alan Garny Date: Mon Dec 9 15:11:24 2019 +1300 Python support: added some Python-based tests (#2178). commit 418964e8ac59f6417349347c60a898331dbf7302 Author: Alan Garny Date: Mon Dec 9 14:48:01 2019 +1300 Python support: get our Python script to use the right path (#2178). commit 105cff2c666eb6b041465a1ba56180e1c9e18b4e Author: Alan Garny Date: Mon Dec 9 14:36:24 2019 +1300 Python support: renamed our Python script (#2178). commit 2090f9fb7f2ead1b70bb18ab602919f9551acdb2 Author: Alan Garny Date: Mon Dec 9 14:35:49 2019 +1300 Python support: moved our Python script (#2178). commit 7d879a283fce122a86d1c527d60006dd405f2be5 Author: Alan Garny Date: Mon Dec 9 14:09:09 2019 +1300 Some minor cleaning up. commit d6d8037be8794a847c828c3675c6f1b150790e58 Author: Alan Garny Date: Mon Dec 9 13:30:11 2019 +1300 Scripts: don't protect using double quotes. The original plan was to support spaces in directory names, hence our use of double quotes. However, to have spaces in a directory name prevents [Python]/bin/jupyter (and therefore our Jupyter console, lab and notebook scripts) from working fine. So, to make our code simpler and easier to maintain, we remove those double quotes from our scripts. commit 10f106b217bb22dbaaf1d700b5a3c5a4d48b0504 Author: Alan Garny Date: Sat Dec 7 16:26:17 2019 +1300 Simulation Experiment view: make sure that our file tab icon gets properly updated when running a simulation from Python. commit 52c716acb69cb1dd167d844202068efec9d530f9 Author: Alan Garny Date: Fri Dec 6 16:05:37 2019 +1300 Some minor cleaning up. commit 908206d331c50d4aebee87d189f6b04c457f63e8 Author: Alan Garny Date: Fri Dec 6 15:48:41 2019 +1300 Some minor cleaning up. commit 7f0cbe1c04c0b3adbf87090abad43d34f7203a2f Author: Alan Garny Date: Fri Dec 6 15:17:09 2019 +1300 Some minor cleaning up. commit 9fd2dbaa11079122bf5f8e9168bde5cf6ba7af83 Author: Alan Garny Date: Fri Dec 6 15:13:42 2019 +1300 Simulation support: fixed a problem with SimulationSupportPythonWrapper::run(). Indeed, it may happen, when trying to call disconnect() on pSimulation, that pSimulation has been deleted just before. So, to call disconnect() hangs up IPython and renders our Python Console window unusable. Unfortunately, there is no (easy?) way to test whether pSimulation is still valid. So, we don't call disconnect() anymore and, instead, pass Qt::UniqueConnection in our calls to connect(). This leaves the connection with waitLoop, but this isn't (shouldn't be?) a problem since waitLoop gets out of scope when leaving SimulationSupportPythonWrapper::run(). commit aba11c46607d3e524c8ae3cbbb775504c1a7c089 Author: Alan Garny Date: Thu Dec 5 18:06:35 2019 +1300 Some minor cleaning up. commit 76d232b174057ac5b8b9953e603870d5c3408f70 Author: Alan Garny Date: Thu Dec 5 17:42:46 2019 +1300 Core plugin: make sure that we get told if there is something wrong with guiOpenFile() and guiOpenRemoteFile(). commit 6b257b26616806e137969901af7db762744e3eb9 Author: Alan Garny Date: Thu Dec 5 16:46:37 2019 +1300 Simulation support: added a data_store() wrapper for our SimulationResults class. commit f1c0a75cf85ce29461f2c2517d74c608722cfd94 Author: Alan Garny Date: Thu Dec 5 16:45:59 2019 +1300 Some minor cleaning up. commit a857304a2de5316749f43fc26b4918d883c770d2 Author: Alan Garny Date: Thu Dec 5 16:42:18 2019 +1300 Some minor cleaning up. commit 63de2b17c7e6f9935165a55e9dc4ef1a4641fea2 Author: Alan Garny Date: Thu Dec 5 16:29:21 2019 +1300 Some minor cleaning up. commit 999b8992995301c5428c821aebdfec7dbecb90f5 Author: Alan Garny Date: Thu Dec 5 16:26:29 2019 +1300 Some minor cleaning up. commit 14f9f09cc25c39d5d6ec25fcd96e00adcc8e36cd Author: Alan Garny Date: Thu Dec 5 15:58:30 2019 +1300 Some minor cleaning up. commit 118d760b35cd52d8abc2e68a83695a570f6d77f9 Author: Alan Garny Date: Thu Dec 5 15:51:31 2019 +1300 Some minor cleaning up. commit 49fb9e0597d53326bf4ffef845346df8d66be5e9 Author: Alan Garny Date: Thu Dec 5 15:45:54 2019 +1300 Some minor cleaning up. commit beca477d5b954eee2d10ca5fe1839621ef976c6d Author: Alan Garny Date: Thu Dec 5 15:44:40 2019 +1300 Python support: use Pythonic names for our Python wrappers. commit e94ea9ac3fdd4cac86403f71362e6d6984a79862 Author: Alan Garny Date: Thu Dec 5 15:44:32 2019 +1300 Some minor cleaning up. commit 3f7806d2722e7972ff8c85762bb06591371d02c3 Author: Alan Garny Date: Thu Dec 5 13:41:58 2019 +1300 Some minor cleaning up. commit f1d124f663e53d6940fa03172a2c50970ec4d877 Author: Alan Garny Date: Thu Dec 5 13:21:45 2019 +1300 Python support: use Pythonic names for our OpenCOR Python module. commit 06c9b5cdbfa99fcf8788d0e75e4636f354800c61 Author: Alan Garny Date: Thu Dec 5 10:19:30 2019 +1300 Python support: provide some user documentation (#2216). commit f94529ea713e3e48c64676dab85815c9b55adff3 Author: Alan Garny Date: Wed Dec 4 11:32:15 2019 +1300 Qt WebKit: upgraded to v5.212.0-alpha3 (#2252). commit 70e4b07b56b9bdc54fb06bb7b1802bcaeea64441 Author: Alan Garny Date: Wed Dec 4 09:52:59 2019 +1300 Some minor cleaning up. commit c82e25f7f245c17ab3c1914139450a39c4d422ae Author: Alan Garny Date: Tue Dec 3 17:53:56 2019 +1300 Some minor cleaning up. commit 6a8a88ccdb9f6c10549cae7960c96627f689450e Author: Alan Garny Date: Tue Dec 3 17:02:02 2019 +1300 Some minor cleaning up. commit 7dc27ae057d776940fa6e924aa38f425e0c5e150 Merge: 04e6628f0 6f3e54972 Author: Alan Garny Date: Tue Dec 3 17:01:00 2019 +1300 Jupyter kernel: make sure that `implementation` and `implementation_version` are properly set (closes #2250). commit 6f3e54972a81f8409ebaeecb9fc69ab294321158 Author: Alan Garny Date: Tue Dec 3 16:27:10 2019 +1300 Slight update to our downloads page (#2250). commit 527e8837e489ceedaff111c539b84a2a4e51b42e Author: Alan Garny Date: Tue Dec 3 16:24:15 2019 +1300 Jupyter kernel: make sure that `implementation` and `implementation_version` are properly set (#2250). commit 4d5593934b171684635aa96fc4358f480d2f634f Author: Alan Garny Date: Tue Dec 3 16:21:00 2019 +1300 Some minor cleaning up. commit 04e6628f0fd208ef3e48df4088cfa2e9e33b2c51 Merge: fd809ff8a 029def067 Author: Alan Garny Date: Tue Dec 3 15:40:47 2019 +1300 Various improvements. commit 029def067ce23b076590843d06c089b5dc32c504 Author: Alan Garny Date: Tue Dec 3 15:05:39 2019 +1300 Some minor cleaning up. commit fce3a2ae1af10c6a57bd99d501eb006f44376f58 Merge: 91602edf4 fd809ff8a Author: Alan Garny Date: Tue Dec 3 15:04:31 2019 +1300 Merge branch 'master' into codefactor. commit 91602edf429d910827a03918b6171e9e8a371d4d Author: Alan Garny Date: Tue Dec 3 15:03:05 2019 +1300 Tests: make it possible to run specific tests. commit ee37f9fed38611c8b149180df59b53b56719efa3 Author: Alan Garny Date: Tue Dec 3 14:44:58 2019 +1300 Tests: no point in passing arguments to our tests. commit 511dc359a26c33b8934d8496c9e48346b71c96b8 Author: Alan Garny Date: Tue Dec 3 14:44:11 2019 +1300 Some minor cleaning up. commit fd809ff8ac3b7a1b87b847fd679b8522d79be0e1 Merge: bcacc483f cd3bf6f81 Author: Alan Garny Date: Tue Dec 3 14:34:22 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin (closes #2247). commit 61a48ed1c1dd601bfe3e7e4a207514ab4f6e7e42 Author: Alan Garny Date: Tue Dec 3 13:56:09 2019 +1300 Revert "Let ESLint know that our jsonData variable is used elsewhere." This reverts commit cf611adb97aadb9e5abb391331a99c093111bdcd. commit cf611adb97aadb9e5abb391331a99c093111bdcd Author: Alan Garny Date: Tue Dec 3 13:38:31 2019 +1300 Let ESLint know that our jsonData variable is used elsewhere. See https://eslint.org/docs/rules/no-unused-vars. commit 141b6a377b08b29fd29037cf67fc5a1c1a375802 Author: Alan Garny Date: Tue Dec 3 13:30:11 2019 +1300 Redundant blank line at the end of a code block should be deleted. See https://google.github.io/styleguide/cppguide.html#Vertical_Whitespace. commit b622b8e886c2d58c3d94f5aed18c9ed537f5356f Author: Alan Garny Date: Tue Dec 3 13:27:31 2019 +1300 Unnecessary escape character. See https://eslint.org/docs/rules/no-useless-escape. commit 0418c9a0010d9d5ce4a22846d730d7f60ac57a98 Author: Alan Garny Date: Tue Dec 3 13:26:23 2019 +1300 Don't use units for zero length. See https://stylelint.io/user-guide/rules/length-zero-no-unit. commit f446e6d4782deac927fddf74d15a91b793e9560e Author: Alan Garny Date: Tue Dec 3 13:19:17 2019 +1300 Slight improvement to our COR page. We should prefer to @import (see http://www.stevesouders.com/blog/2009/04/09/dont-use-import/). commit cd3bf6f8181d9a712ae877be69054a7aabd5136e Author: Alan Garny Date: Tue Dec 3 13:02:36 2019 +1300 Slight update to our what is new page (#2247). commit ef0d0bce17f938ee3efb7fed134ead88c5c7fc13 Author: Alan Garny Date: Tue Dec 3 13:01:47 2019 +1300 Slight update to our downloads page (#2247). commit 090abdcc6884d5a7ccf4c30e465921cb7d51a647 Author: Alan Garny Date: Tue Dec 3 13:00:11 2019 +1300 Plugins: a selectable plugin cannot be needed by another plugin (#2247). commit d97d363d660c72eff066a8507b924cbda2b90082 Author: Alan Garny Date: Tue Dec 3 12:11:07 2019 +1300 Some minor cleaning up. commit 0cc36173871cc4dfc1868bffad2b70670c4b96bf Author: Alan Garny Date: Tue Dec 3 12:07:06 2019 +1300 Some minor cleaning up. commit bcacc483f7c21f6c4afee026153bae86b6bc5d6a Merge: ad0bae9fc b7ba21527 Author: Alan Garny Date: Tue Dec 3 09:59:00 2019 +1300 Don't make our JupyterKernel and PythonShell plugins selectable (closes #2245). commit b7ba21527e391602897a2a9f1c4d0ea5ca6ccd98 Merge: a6ff41fc1 ad0bae9fc Author: Alan Garny Date: Tue Dec 3 09:20:17 2019 +1300 Merge branch 'master' into issue2245. commit a6ff41fc12d6c731877a0c128975df35b54c7994 Author: Alan Garny Date: Tue Dec 3 09:19:38 2019 +1300 Slight update to our what is new page. commit 60495e713dd74bcb7c1e50617dde967a5c5b536e Author: Alan Garny Date: Tue Dec 3 09:16:15 2019 +1300 Slight update to our downloads page (#2245). commit ad0bae9fc75d560d4e76e6d5f7fb40be092ec64d Author: Alan Garny Date: Mon Dec 2 17:47:04 2019 +1300 Some minor cleaning up. commit 341220da65ec282ff2d7869beea9dff3d6f7b38e Author: Alan Garny Date: Mon Dec 2 17:34:24 2019 +1300 Some minor cleaning up. commit 07bb1ccc687aa25a058d923f2bd434417fa962bb Author: Alan Garny Date: Mon Dec 2 17:33:27 2019 +1300 Some minor cleaning up. commit a3e3622ea77f1fec8be1b9fff25cc835dc7fad22 Author: Alan Garny Date: Mon Dec 2 17:18:06 2019 +1300 Don't make our JupyterKernel and PythonShell plugins selectable (#2245). commit 74a77cb40b1222d7d9d8b4ea30bd1bcf1c2a8c7d Author: Alan Garny Date: Mon Dec 2 17:05:02 2019 +1300 Some minor cleaning up. commit 798c239e240c48e15605a702f45167759c4639b9 Author: Alan Garny Date: Mon Dec 2 16:11:55 2019 +1300 Some minor cleaning up. commit a7cba0dfa44c46edfff22221440add61f5cbc980 Author: Alan Garny Date: Mon Dec 2 16:11:14 2019 +1300 Some minor cleaning up. commit fabb238958182722eba44f3d8bed756f9fa67102 Merge: 01269be75 2fcb71697 Author: Alan Garny Date: Mon Dec 2 16:07:32 2019 +1300 Replaced `http` with `https` wherever possible (closes #2164). commit 2fcb7169715f02724ef175d7282ae9e3b24ffc71 Author: Alan Garny Date: Mon Dec 2 14:46:52 2019 +1300 Some minor cleaning up. commit 0f00f1afdd313a4d2c36ca7a0da9a3ccf1d646ab Author: Alan Garny Date: Mon Dec 2 14:23:38 2019 +1300 Python: slight update to our README.rst file. commit bc2cd1e227de3a40cca1dbe2507b56cab7c2fa85 Author: Alan Garny Date: Mon Dec 2 14:23:27 2019 +1300 Some minor cleaning up. commit 07069ae0427fe37ced823723a6f124cc20c8807b Author: Alan Garny Date: Mon Dec 2 14:23:05 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 6213dc216019dbabebfb4825941d47b5017d5ca5 Author: Alan Garny Date: Mon Dec 2 14:04:55 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 162b66569840e86aa794fbbb4014c2514337e7dd Author: Alan Garny Date: Mon Dec 2 13:55:31 2019 +1300 Some minor cleaning up. commit 6fb5cc17fdfeb735ce5f63b3697ecdec969b305a Author: Alan Garny Date: Mon Dec 2 13:51:48 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit b08e07f1b8a619b9278ecefba076fb7a5af0be3f Author: Alan Garny Date: Mon Dec 2 13:30:35 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 826dc77d8e39e61d99c31aa4f34d7db40969014e Author: Alan Garny Date: Mon Dec 2 13:30:09 2019 +1300 Some minor cleaning up. commit e503ced83fa6bb3309bfe7030e6a7e32b4957239 Author: Alan Garny Date: Mon Dec 2 13:28:17 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 0fec2b1f4244991e512a67e0b31e73e70b036d13 Author: Alan Garny Date: Mon Dec 2 13:22:41 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit 1b2b7d9dd5c86aa9a810435ee322a17258582f38 Author: Alan Garny Date: Mon Dec 2 13:08:55 2019 +1300 License: removed double spaces. commit f6b7f2f54259611932df18842b54b4b43b564cd4 Author: Alan Garny Date: Mon Dec 2 12:57:31 2019 +1300 Removed `www.` wherever possible. commit a8ef7e1e1427cdda29e2f8009fd41b4ab936e426 Merge: 7b25a4144 01269be75 Author: Alan Garny Date: Mon Dec 2 12:43:42 2019 +1300 Merge branch 'master' into issue2164. commit 01269be751fec9e96d7ecc9d696df142d720fe0a Merge: 47e9fb2bc cfc38db33 Author: Alan Garny Date: Mon Dec 2 12:11:51 2019 +1300 Added LZMA extension to Python. commit 7b25a414465ed8f796b4fe42308fb4ec0a851f31 Author: Alan Garny Date: Mon Dec 2 12:08:25 2019 +1300 Replaced `http` with `https` wherever possible (#2164). commit cfc38db33f9d3aada078bb75c6ff8093322efaa4 Author: Alan Garny Date: Mon Dec 2 11:09:02 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit d2759ad34f8c1199febcbfcf195a06133a440b20 Author: Alan Garny Date: Mon Dec 2 11:00:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 5ade7acf51bbb70baa25ee38614bc2e0fc63516c Author: Alan Garny Date: Mon Dec 2 10:57:48 2019 +1300 Python package: slight cleaning up of our README.rst file. commit f69c0c7f71fd42b85d59eaa96bd9ae16ed852ac4 Merge: 3f3769f38 47e9fb2bc Author: Alan Garny Date: Mon Dec 2 10:51:10 2019 +1300 Merge remote-tracking branch 'upstream/master' into python-lzma. commit 3f3769f388bd04ab217ef42d13c6310a3f219b39 Author: Alan Garny Date: Mon Dec 2 10:49:56 2019 +1300 Python package: slight cleaning up of our CMakeLists.txt file. commit 9a9c5d38c02439f42759b27692dcbbc56865e8f0 Author: Alan Garny Date: Mon Dec 2 10:39:07 2019 +1300 Python package: slight updates to our README.rst file. Just reformatted things and removed the Windows "dependencies" since they are actually taken care of in our CMakeLists.txt file. commit 47e9fb2bccb66dbd3313770db3e63a126e6170cc Merge: 1251c8660 edc9d8de1 Author: Alan Garny Date: Fri Nov 29 23:28:59 2019 +1300 CellML support: fixed an issue with the CellML API wrongly allowing code generation for non-runnable models (closes #2240). commit edc9d8de1faa95bef83156c50ed4ee5c2a6cf0f5 Author: Alan Garny Date: Fri Nov 29 19:58:39 2019 +1300 Slight update to our downloads page (#2240). commit d1faca68c6311565a2e8e53f2e7e4ac3831f9739 Author: Alan Garny Date: Fri Nov 29 19:53:38 2019 +1300 CellML API : new binaries for version 1.12 (#2240). commit e4f50865a81b1128322d0f6076eed4a62c64339b Author: Alan Garny Date: Fri Nov 29 19:53:07 2019 +1300 CellML API: prevent some warnings (and therefore an error) on Linux. commit ff7a761d53b667af53c1fbcfe3e6a52d8d7b58ee Author: Alan Garny Date: Fri Nov 29 19:25:35 2019 +1300 CellML API: prevent a warning (and therefore an error) on Windows. commit 442a1fc873881256f5f33467e3408f7c218c79d6 Author: Alan Garny Date: Fri Nov 29 14:23:30 2019 +1300 Improved our formatMessage() method. The second character must be lower case or space type. Also, we don't change the casing if the message starts with "CellML". Indeed, should a message start with "CellML", we wouldn't want it now to start with "cellML"...! commit 6af2bb317828fd64a2cdfaa7935a0af8fb18b75f Author: Alan Garny Date: Fri Nov 29 14:21:03 2019 +1300 Some minor cleaning up. commit d2bd5117cd4bf1ec3bb0985f638482569ab12bac Merge: dabd6c38b 1251c8660 Author: David Brooks Date: Thu Nov 28 23:20:22 2019 +1300 Merge branch 'master' into python-lzma commit dabd6c38bb798d69207ecc17abaa56f2e23216f0 Author: David Brooks Date: Thu Nov 28 23:17:43 2019 +1300 Python: note build dependencies. commit b553e91f08e0df575b847bf4506ff0677a799b10 Author: David Brooks Date: Thu Nov 28 23:01:45 2019 +1300 Python: use installed BZip2 library under Linux instead of building it ourselves. commit 01b0f1845a63628800f1972d9179d55819fdf959 Author: David Brooks Date: Thu Nov 28 22:58:51 2019 +1300 Python: tidy up building SQLite3 extension. commit 97b5e02700183abaad0dd0032ce995350fb666a0 Author: David Brooks Date: Thu Nov 28 22:55:01 2019 +1300 Python: include the `lzma` extension when building Python. commit 1251c86600cd7785d459b8436a2d1b2790b0e321 Merge: 6999d18c6 63da22bee Author: Alan Garny Date: Thu Nov 28 18:27:12 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 63da22bee3ddc0def96686f4144491346804bc61 Author: Alan Garny Date: Thu Nov 28 16:41:09 2019 +1300 Simulation Experiment view: fixed a small issue with updating our output widget. commit 6999d18c61da43122deb7701d65e67b5b0792b94 Author: Alan Garny Date: Thu Nov 28 14:40:42 2019 +1300 Some minor cleaning up. commit 77e6d571f6c6e707c78fbc49934e4d8bc28180a9 Merge: b1e7f85da 0101a5457 Author: Alan Garny Date: Thu Nov 28 14:38:51 2019 +1300 Simulation Experiment view: don't access our central widget directly anymore (closes #2218). commit 0101a54575d6441f80632f9435b2d772b51be216 Author: Alan Garny Date: Thu Nov 28 13:23:39 2019 +1300 Simulation Experiment view: don't access our central widget directly (#2218). commit 7725addb198d5292e2d031dc26b377d44faba22c Author: Alan Garny Date: Thu Nov 28 13:23:34 2019 +1300 Some minor cleaning up. commit 276292a42521d3838ddecdbfb31d01310f94e04a Author: Alan Garny Date: Thu Nov 28 12:49:40 2019 +1300 Slight update to our downloads page (#2218). commit 2ba34dea9d7519042fed35f9e8b3d40318e51d8c Author: Alan Garny Date: Thu Nov 28 12:47:44 2019 +1300 Some minor cleaning up. commit 4dededb601e34bb29bb4a0604c9fb633f18442e2 Author: Alan Garny Date: Thu Nov 28 12:40:07 2019 +1300 Simulation Experiment view: don't access our central widget directly (#2218). commit 214be55171b7e5088fe9e577a36ea5badad3d9f4 Author: Alan Garny Date: Thu Nov 28 11:51:03 2019 +1300 Simulation Experiment view: don't access our central widget directly (#2218). commit 4f8f88fa21687f9ba04128084e6af659a5a6a8e4 Author: Alan Garny Date: Thu Nov 28 11:49:23 2019 +1300 Some minor cleaning up. commit b1e7f85daefbe1869c81a07a8f721e64a593c401 Author: Alan Garny Date: Thu Nov 28 10:44:08 2019 +1300 Some minor cleaning up. commit a5087ee3051e1d50c6703bf023677b676385b7ac Merge: 734637cd0 266db8d9c Author: Alan Garny Date: Thu Nov 28 10:40:58 2019 +1300 Simulation support: don't require all our solvers to be installed anymore (closes #2234). commit 266db8d9ce20f8c96f921cfa1dd236d7c1307ea1 Author: Alan Garny Date: Thu Nov 28 09:43:22 2019 +1300 Slight update to our downloads page (#2234). commit 7582459fbba18152c93a00d7cfa5cae508cbe015 Author: Alan Garny Date: Thu Nov 28 09:22:26 2019 +1300 Plugin manager: all our solvers should be loaded when in CLI mode (#2234). This ensures that we can do whatever we want from Python when in "CLI mode". If we are in GUI mode, we want to allow the user to be able to select whatever solver s/he wants to have. When it comes to Python support, if a solver is not loaded but needed by a Python script, then we will get an error (see commit d51e9669d). commit d51e9669d6146086c1059d9d4c6c828764de3406 Author: Alan Garny Date: Wed Nov 27 19:37:18 2019 +1300 Simualtion Experiment view: improved our our simulation Python wrapper (#2234). This needed since different types of issues may occur, e.g. a solver is not present. This also means that our Python console now generates the same error as our Simulation Experiment view. commit e01a134878bdb3d182faa115a24f640e1e99999c Author: Alan Garny Date: Wed Nov 27 19:30:39 2019 +1300 Some minor cleaning up. commit 7a893ba7c3e2234640b963148ab894828a7042fe Author: Alan Garny Date: Wed Nov 27 19:22:57 2019 +1300 Some minor cleaning up. commit dd3c836461e6500e5561d462db7c37d4cd21c333 Author: Alan Garny Date: Wed Nov 27 18:11:42 2019 +1300 Some minor cleaning up. commit 18a77b66e416d1f204a83665bdcbe091745f402a Author: Alan Garny Date: Wed Nov 27 17:38:02 2019 +1300 Simulation Experiment view: make sure that we always update ourselves when our enabled state changes. commit 24abad8c6bae61a5d97f917ec5060795cddd2407 Author: Alan Garny Date: Wed Nov 27 17:23:51 2019 +1300 Simulation Experiment view: reverted commit af84fb6 and properly fixed the issue we had. Indeed, it definitely didn't fix our problem while we do (should!) now. commit 5c967de7deaaeb71079a82dadb59865ddb51ea1a Author: Alan Garny Date: Wed Nov 27 17:22:52 2019 +1300 Some minor cleaning up. commit e38b6effa76f8886e23f3a0e108c5a9b3adbbf23 Author: Alan Garny Date: Wed Nov 27 15:56:48 2019 +1300 Simulation support: don't require all our solvers to be installed (#2234). commit 734637cd03358da2381a7c441e4367110b039661 Merge: bbd473b5b 373d1d4c1 Author: Alan Garny Date: Wed Nov 27 15:44:35 2019 +1300 Python support: merged duplicated code (closes #2225). commit 373d1d4c15c36c184138efcb556825e3bdbc01a9 Author: Alan Garny Date: Wed Nov 27 14:18:42 2019 +1300 Slight update to our downloads page (#2225). commit 4d22669524d067ed4add897b6f5eaa7e033099b1 Author: Alan Garny Date: Wed Nov 27 14:17:15 2019 +1300 Some minor cleaning up. commit 28002af3bae8f5437ee658bcf2885aa7b98c0ccc Author: Alan Garny Date: Wed Nov 27 14:09:57 2019 +1300 Python support: merge duplicated code (#2225). commit 9d03e24159cd39895540565c745801d32b2a7180 Author: Alan Garny Date: Wed Nov 27 13:08:17 2019 +1300 Some minor cleaning up. commit 1d7f062a39ec969dff47e33c1332e58abc15a7e9 Author: Alan Garny Date: Wed Nov 27 13:02:38 2019 +1300 Python support: merge duplicated code (#2225). commit ccc0719fb859fca831c62eddd7f58bb6a9a4668b Author: Alan Garny Date: Wed Nov 27 12:12:10 2019 +1300 Python support: merge duplicated code (#2225). commit 21cf3e262c458aab86bf815528dc2d8923ef45d7 Author: Alan Garny Date: Wed Nov 27 10:31:02 2019 +1300 Python support: merge duplicated code (#2225). commit 0c1ec6de9a7eded9067070f84d64135f0a847a3c Author: Alan Garny Date: Wed Nov 27 09:50:16 2019 +1300 Python support: merge duplicated code (#2225). commit 303cc0b561a024eee8399f6d699fb075f3a32413 Author: Alan Garny Date: Wed Nov 27 09:42:03 2019 +1300 Python support: merge duplicated code (#2225). commit f2accb69b303da0e641912970d2fd5218bd005d5 Merge: d8cad0458 bbd473b5b Author: Alan Garny Date: Tue Nov 26 18:10:16 2019 +1300 Merge branch 'master' into issue2225. commit bbd473b5b2d0bfdda337c29647acad85f588b82c Merge: 5a33bd367 1d194e025 Author: Alan Garny Date: Tue Nov 26 18:09:08 2019 +1300 Cleaning up. commit d8cad0458c9746dab86a680cd6f375b8e5ccde34 Author: Alan Garny Date: Tue Nov 26 17:52:05 2019 +1300 Moved (and renamed some of) our inline files to [OpenCOR]/src/misc. Indeed, some inline files that we will want to have (e.g. for opensimulation) are going to be needed by different plugins, so... commit b1f35b60d5e58cb6e18672c8f5a582d63c4bc556 Author: Alan Garny Date: Tue Nov 26 17:41:14 2019 +1300 Packaging: make sure that we can create our NSIS-based installer on Windows. CMAKE_INSTALL_DEFAULT_COMPONENT_NAME is needed on macOS for productbuild to work fine, but it's somehow causing us problems with NSIS on Windows, so... commit 2302cd2246833af9f18d2377fb7143fa6430df94 Author: Alan Garny Date: Tue Nov 26 17:07:43 2019 +1300 Moved our ICU and Mesa libraries to a better place. commit 38b9c7b412145a0155647b41c6bd319abaaba5ca Author: Alan Garny Date: Tue Nov 26 16:40:34 2019 +1300 Python support: prevent duplicated code (#2225). commit d37e7b4390ab5b3a65d8e58ce5286f1a5e460977 Author: Alan Garny Date: Tue Nov 26 16:21:36 2019 +1300 Python support: prevent duplicated code (#2225). commit 1d194e025643ea99daba1fc6c46d759aa603a73a Merge: 96c1dd918 5a33bd367 Author: Alan Garny Date: Tue Nov 26 16:15:50 2019 +1300 Merge branch 'master' into cleaning-up. commit 5a33bd3673ad29737f13c25ee44f6bb76a5b1556 Merge: cdbf2d18a 4ae5bb107 Author: Alan Garny Date: Tue Nov 26 16:14:57 2019 +1300 Some minor cleaning up. commit 96c1dd918f4a1cdda35257a6f4d305dd13447320 Author: Alan Garny Date: Tue Nov 26 16:14:16 2019 +1300 Make sure that our preferred C and C++ compilers are used to build external projects. We now guarantee this for CMake-based projects, but not sure about QMake-based ones...!? commit e1dd907ce270975719da8ca66e0bf54df8293441 Author: Alan Garny Date: Tue Nov 26 15:45:40 2019 +1300 Python support: prevent duplicated code (#2225). commit 4ae5bb1079291044b99e70b35e87c118c54ccb0b Merge: d67a3bcd3 cdbf2d18a Author: Alan Garny Date: Tue Nov 26 14:51:27 2019 +1300 Merge branch 'master' into issue2224 commit d67a3bcd31a8c8cd6e74d27dbf165d1aac541d8f Author: Alan Garny Date: Tue Nov 26 14:41:54 2019 +1300 Jupyter kernel: remoevd our README.rst file (#2224). It contained some information about debugging a Jupyter notebook, but things have changed a bit and I wasn't able to get a Jupyter connection file using the instructions (couldn't find the debug output?!). Either way, we should be able to come up with up-to-date debugging information when actually needed. commit cdbf2d18aef06631e011903ac2a6afb6f69727af Merge: aef10983a c167e3663 Author: Alan Garny Date: Tue Nov 26 14:32:56 2019 +1300 Python: build and link to our libbz2 under Windows and Linux. commit bf4f5506f83ecc474b8be8cc0d01d4c126c268c8 Author: Alan Garny Date: Tue Nov 26 14:10:03 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file (#2224). commit fcbcf48f77c105ad856bca41f40d381353395f35 Author: Alan Garny Date: Tue Nov 26 14:06:39 2019 +1300 Jupyter kernel: some minor cleaning up of our README.rst file (#2224). commit b3010e4b9f183802db5c9ac332bcce69421edb3f Author: Alan Garny Date: Tue Nov 26 14:00:25 2019 +1300 Jupyter kernel: renamed our NOTES.rst file to README.rst (#2224). commit c167e36635c5b5fbf1ff745b6fd8c565af019929 Author: Alan Garny Date: Tue Nov 26 13:58:13 2019 +1300 Python: new Windows binaries. commit 8df7378889d2d3ae0002c2219f29d545ea4cbbec Author: Alan Garny Date: Tue Nov 26 13:53:47 2019 +1300 Python package: we definitely need to make sure that our package's binaries directory exists. commit 333c5a063514da8c36ae859d874dc45e41b4055f Author: Alan Garny Date: Tue Nov 26 13:04:22 2019 +1300 Some minor cleaning up. commit 8f561b7c788b5002b5a1d8d6573593727ed77839 Merge: b592228e2 b75be1f52 Author: Alan Garny Date: Tue Nov 26 12:52:09 2019 +1300 Merge branch 'python_bzip2' of https://github.com/dbrnz/opencor into python_bzip2. commit b592228e236525ebfb576d13ee23aee20eda0c38 Author: Alan Garny Date: Tue Nov 26 12:51:08 2019 +1300 Python package: some minor cleaning up. commit b75be1f52cbcd29d4d401f0ec2fffcac35b5914b Author: David Brooks Date: Tue Nov 26 12:38:19 2019 +1300 Python: there's no need to create the external binaries directory. commit b48387f0806877ce52143d5590ebb902775cbc4c Author: Alan Garny Date: Tue Nov 26 12:28:49 2019 +1300 Python: new Linux binary. commit c7a5ada82b6f37dbfdbdd3d09b9fd151196def63 Merge: a06e35646 aef10983a Author: David Brooks Date: Tue Nov 26 10:44:59 2019 +1300 Merge branch 'master' into python_bzip2 commit a06e35646467edeeac20aa6c08298c51c06d5c32 Author: David Brooks Date: Tue Nov 26 09:48:22 2019 +1300 Python: use correct name for bzip2 library built under Windows. commit b1ac6ca48d6b05500bd0f892b3515ffdeb6f55ea Author: David Brooks Date: Tue Nov 26 09:47:41 2019 +1300 Python: use our bzip2 repository. commit aef10983aaaa82b926d1adc847036e8a55efa2fb Merge: a67d0aa58 1515d523b Author: Alan Garny Date: Tue Nov 26 08:53:00 2019 +1300 Mesa: upgraded to version 19.2.6 (closes #2230). commit 1515d523b0daa715ae2139ca81d12c0323956e64 Author: Alan Garny Date: Mon Nov 25 18:14:14 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 35ffce1a29c05b02a68ee698342197938cd70ce0 Author: Alan Garny Date: Mon Nov 25 18:07:32 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit a15bcb4d03eca4be2c8cdd899bd798364d53dedc Author: Alan Garny Date: Mon Nov 25 17:51:24 2019 +1300 Mesa: binary for version 19.2.6 (#2230). commit eea0ecf5d6d5fc95e6b6a9a30b675d366ba3225f Merge: 7913c7846 a67d0aa58 Author: Alan Garny Date: Mon Nov 25 17:44:10 2019 +1300 Merge branch 'master' into issue2230. commit 7913c784620bebbb30c0307cc30d0e7d035de830 Author: Alan Garny Date: Mon Nov 25 17:42:13 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit 358349c9204fc2e27d42822189aec6d248774073 Author: Alan Garny Date: Mon Nov 25 17:41:38 2019 +1300 Make sure that we can build OpenCOR without Python support on Linux. commit e1f59cfb75414e967993f0d48f8302648bbe1a1b Author: Alan Garny Date: Mon Nov 25 17:39:08 2019 +1300 Some minor cleaning up. commit a67d0aa589083d5a4620156f1f208c584ea02292 Merge: deb571a0b d09b69e66 Author: Alan Garny Date: Mon Nov 25 17:34:19 2019 +1300 macOS packaging: replaced our use of PackageMaker with that of productbuild (closes #2210). commit 847cb9b5a5fb17dcbcacef29c0297edc996c82e0 Author: Alan Garny Date: Mon Nov 25 17:25:23 2019 +1300 CMake: only install our Python-related scripts if we built OpenCOR with Python support. commit ad331eeff41a663a251398edfe7cb99802abfb0a Author: Alan Garny Date: Mon Nov 25 17:21:49 2019 +1300 Slight update to our downloads page (#2230). commit 5fdff63c2eeead9f55cf2f24e2f132f4b668b95f Author: Alan Garny Date: Mon Nov 25 17:20:04 2019 +1300 Mesa: binary for version 19.2.6 (#2230). commit 85774812cf68cd23c7a7ef23a659e36cbaf796b7 Author: Alan Garny Date: Mon Nov 25 17:06:24 2019 +1300 Mesa: upgraded to version 19.2.6 (#2230). commit d09b69e664fa3d7092d35359bf4fc43ca1fd83a7 Author: Alan Garny Date: Mon Nov 25 16:19:44 2019 +1300 Slight update to our downloads page (#2210). commit 3a2f3cce5dfad50eed62e1f6a7d36ddcb002c46e Merge: a24ec55f7 deb571a0b Author: Alan Garny Date: Mon Nov 25 15:50:45 2019 +1300 Merge branch 'master' into issue2210. commit deb571a0ba8857301cfea0613c650d1ab62597bb Merge: 7c5f4884c 37d250636 Author: Alan Garny Date: Mon Nov 25 15:50:06 2019 +1300 Some minor cleaning up. commit a24ec55f79a4c8cf0d68852af980b7bab3fae0f6 Author: Alan Garny Date: Mon Nov 25 15:48:03 2019 +1300 macOS packaging: replace our use of PackageMaker with that of productbuild (#2210). commit 37d250636d04c91ea26c935fe5a7c08609131e3d Merge: 4a66e86af 7c5f4884c Author: Alan Garny Date: Mon Nov 25 15:16:15 2019 +1300 Merge remote-tracking branch 'upstream/master'. commit 7c5f4884c0cfa36b8f8672e1db8539b15f902281 Merge: be13ada23 bf231de79 Author: Alan Garny Date: Mon Nov 25 15:15:24 2019 +1300 Apply fixes from CodeFactor commit 4a66e86af6ef695781e38f35f632ab63ddecd051 Author: Alan Garny Date: Mon Nov 25 14:39:47 2019 +1300 Some minor cleaning up. commit d1692ff9c28f9ada697aa85459edb504dae32ca1 Author: Alan Garny Date: Mon Nov 25 14:35:02 2019 +1300 Some minor cleaning up. commit 75f6a96caaefe18189001313b61e5f074e26bb97 Author: Alan Garny Date: Mon Nov 25 14:23:44 2019 +1300 Some minor cleaning up. commit 90c29024bd7e943fb3e133fa9765b1ef158d22cf Author: Alan Garny Date: Mon Nov 25 14:22:54 2019 +1300 Some minor cleaning up. commit ee1ae8da7d9b122c8f555ed783759e2338200046 Author: Alan Garny Date: Mon Nov 25 14:20:09 2019 +1300 Some minor cleaning up. commit af54d4b2411fe6da4337135e2c8a59bcc46eccde Merge: 480a54497 217e8c4b4 Author: Alan Garny Date: Mon Nov 25 14:17:58 2019 +1300 Apply fixes from CodeFactor. commit 217e8c4b47dd9b00c36866330725726ddec58742 Author: codefactor-io Date: Mon Nov 25 01:17:33 2019 +0000 [CodeFactor] Apply fixes commit 480a54497d9651b0fbdbc3df8bdb7293bace84fd Merge: be13ada23 d8391f5e8 Author: Alan Garny Date: Mon Nov 25 14:16:43 2019 +1300 Apply fixes from CodeFactor. commit d8391f5e89b2e77acf94be3b1ab414b8a42b969a Author: codefactor-io Date: Mon Nov 25 01:15:47 2019 +0000 [CodeFactor] Apply fixes commit bf231de7934c86de6b9622dbc70ac6a56f788c73 Author: codefactor-io Date: Mon Nov 25 01:12:47 2019 +0000 [CodeFactor] Apply fixes commit d8aa1a539b43215c0d5ce1ff5b18fa68b9242faa Author: Alan Garny Date: Mon Nov 25 13:11:36 2019 +1300 macOS packaging: slight improvement to the way we package OpenCOR on macOS. This is basically the proper way to handle packaging using CPack rather than customising things in our package script. commit c66ecc5b6e21ab812bf670d88b8668d8846923e9 Author: Alan Garny Date: Mon Nov 25 11:40:34 2019 +1300 macOS: added support for SED-ML files and COMBINE archives in our Info.plist file. commit 93244c571cb8ef406d64c62dac4ba039e47b5a15 Author: Alan Garny Date: Mon Nov 25 10:37:03 2019 +1300 macOS: specify, in our Info.plist file, the minimum version of macOS that we support. commit 336983c85f57250821762ab85790dff2d02d1197 Author: Alan Garny Date: Mon Nov 25 10:36:18 2019 +1300 macOS: make sure that we support high resolution in our Info.plist file. It looks like it was working fine until now, but it can't harm having this key set. commit bf40e3c5cab262c76db09c5693d8087a59a8ef87 Author: Alan Garny Date: Mon Nov 25 10:31:45 2019 +1300 macOS: slight update to our Info.plist file. commit 99339ec2f737ffd66192e5e7c73dea304229431d Author: Alan Garny Date: Mon Nov 25 10:21:45 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit 4c0c949c90ccfae69bc603a2c6c4b6bfeb3cddfe Author: Alan Garny Date: Mon Nov 25 10:05:52 2019 +1300 macOS: slight updates to our Info.plist file. As per https://developer.apple.com/library/archive/documentation/General/Reference/InfoPlistKeyReference/Articles/AboutInformationPropertyListFiles.html#//apple_ref/doc/uid/TP40009254-SW1. commit cd1365a3c4cd2133a18012b49de32bc709911a5f Author: Alan Garny Date: Mon Nov 25 09:49:46 2019 +1300 macOS: alphabetically order the keys in our Info.plist file. commit 34d3d361d79ba45fd7a18726b5d6d67d0d253801 Author: David Brooks Date: Sun Nov 24 09:24:51 2019 +1300 Python: use the same compiler for building Python as used for building OpenCOR. commit 1e691e6d953849818ad4733a18463f85569a2363 Author: David Brooks Date: Fri Nov 22 16:48:06 2019 +1300 Python: tidy up building of bzip2. commit e53db9f54c6f5ea09628ec288abef8e83c202d68 Author: David Brooks Date: Fri Nov 22 16:29:54 2019 +1300 Merge branch 'master' into python_bzip2 commit 818edc3f97c03e903694274ade20df13729eb357 Author: David Brooks Date: Fri Nov 22 16:08:03 2019 +1300 Python: built bzip2 library includes version on Linux. commit be13ada23b22b5e5984e4ada7a9b892e15580234 Merge: bf13bef1d f95de828f Author: Alan Garny Date: Fri Nov 22 16:00:00 2019 +1300 CMake: specify the compiler we want to use. commit 3a362e1beb2b1da850ec7fbe0ec9916fa5c490a3 Author: David Brooks Date: Fri Nov 22 15:56:20 2019 +1300 Python: we need a shared bzip2 library for Linux. commit 9d22d514d57f72554269e94828b235acbd337306 Author: David Brooks Date: Fri Nov 22 15:30:27 2019 +1300 Python: build bzip2 library under Windows and Linux. commit f95de828f12af07fe8e655d3590a0f077c834eb0 Author: Alan Garny Date: Fri Nov 22 15:26:20 2019 +1300 CMake: specify the compiler we want to use. commit 8654f205f7190d65c8846e0bb8687bd29a9c4285 Author: Alan Garny Date: Fri Nov 22 14:22:04 2019 +1300 CMake: specify the compiler we want to use. commit cf4fde03949ba88e9899f73bf46e4e8bccf2e7ab Merge: e762a5c51 bf13bef1d Author: Alan Garny Date: Fri Nov 22 14:18:32 2019 +1300 Merge branch 'master' into set_compiler commit bf13bef1dce409ffa66ac6cd00e0588f0034e6d5 Merge: 8d3fe9f5b 3fea2f2a4 Author: Alan Garny Date: Fri Nov 22 14:17:41 2019 +1300 Python: Upgraded Jupyter notebook to 6.0.2. commit e762a5c51c3b9f7cb9169242e5b7b57453845176 Author: David Brooks Date: Fri Nov 22 12:34:29 2019 +1300 CMake: specify the compiler we want to use. commit 3fea2f2a4cda0a3efd4e5ee386e72e0194472c11 Author: David Brooks Date: Fri Nov 22 12:23:02 2019 +1300 Python: Upgrade Jupyter notebook to 6.0.2. See https://github.com/jupyter/notebook/blob/master/docs/source/changelog.rst for details. commit 8d3fe9f5b9510a1643f750c581e8159918b2d6b2 Merge: 4048a366b 6a34f01f0 Author: Alan Garny Date: Fri Nov 22 11:13:00 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (closes #2219). commit 6a34f01f007ad6a219211f6ea48c43458588411e Author: Alan Garny Date: Fri Nov 22 10:18:04 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (#2219). commit 5fc09367422414f52e655e280452d00702c7f3ea Author: Alan Garny Date: Fri Nov 22 10:06:34 2019 +1300 Slight update to our downloads page (#2219). commit e6c3c645ef79b8c5fc9e4370e018ae4d9a663c5c Author: Alan Garny Date: Fri Nov 22 10:03:41 2019 +1300 Python support: update the PATH using `\` rather than `/` on Windows (#2219). commit 4048a366b3ed5b10109b80cc87cf04414dd4a3f8 Author: Alan Garny Date: Thu Nov 21 16:30:36 2019 +1300 Python: updated our test Python script. So that our remote files now point to our master branch. commit 6729b7432e263680f31904a022def936efa21b61 Merge: 76fbc4c37 257054155 Author: Alan Garny Date: Thu Nov 21 14:21:40 2019 +1300 General: added support for Python (closes #1255). commit 25705415599102f40df8362342d80ce705cb6dfb Author: Alan Garny Date: Thu Nov 21 13:25:44 2019 +1300 Slight updates to our downloads and what is new pages (#1255). commit a0ee6fbe58eb8a7f39df8ff7a79d7a87cb1d6f87 Author: Alan Garny Date: Thu Nov 21 12:35:24 2019 +1300 Some minor cleaning up. commit 79e61f8de0f9afbef8104316ad5a49cf7ff906e3 Author: Alan Garny Date: Thu Nov 21 12:19:06 2019 +1300 PythonPackages and PythonQt packages: updated our binaries. commit d2f3b5ba909ea5309ad50a2aecfa97fb25669c19 Author: Alan Garny Date: Thu Nov 21 11:49:29 2019 +1300 Python package: updated our binaries. commit 130064adc7f8e1402a3e043d1015d4b911ec694e Author: Alan Garny Date: Thu Nov 21 11:31:56 2019 +1300 Some minor cleaning up. commit f2d16f01a646f56f1b4d6c057c3438baf2ee7195 Author: Alan Garny Date: Thu Nov 21 10:54:15 2019 +1300 Some minor cleaning up. commit 561b9841725ffdf14efb67c477027d44fd2816e0 Author: Alan Garny Date: Thu Nov 21 10:24:25 2019 +1300 Some minor cleaning up. commit 5e363992a192fdc9474c4ed27d2ca059e79c9959 Author: Alan Garny Date: Thu Nov 21 10:05:49 2019 +1300 Some minor cleaning up. commit ef3ccfbe58b37ea2750de4ca8cde567a425791d5 Author: Alan Garny Date: Thu Nov 21 09:47:39 2019 +1300 Some minor cleaning up. commit a5c5d38e7dc7cff0b777e4d6205c4ad9c83d543a Author: Alan Garny Date: Wed Nov 20 18:49:16 2019 +1300 Python interface: it shouldn't rely on a plugin being installed! commit a0c591925e09d824806b07d40daffe8e1600a28c Author: Alan Garny Date: Wed Nov 20 18:48:55 2019 +1300 Some minor cleaning up. commit b3c63862b5bc49bd16ec27bee4b8efcfe1b0663e Author: Alan Garny Date: Wed Nov 20 18:18:31 2019 +1300 Python: removed unneeded patch files for Matplotlib. commit 9dad9568ea8aa87f5e73c18eabb45e97e49e842f Author: Alan Garny Date: Wed Nov 20 17:54:03 2019 +1300 Some minor cleaning up. commit 5d8846b7fcfcf649043605463fd655b5aa6d5ce7 Author: Alan Garny Date: Wed Nov 20 17:30:15 2019 +1300 Some minor cleaning up. commit 7f8c2142919c302b77fed948b3342dceb00e5201 Author: Alan Garny Date: Wed Nov 20 17:12:31 2019 +1300 Some minor cleaning up. commit 8a646eb3a35e01a59d3b0171d33b30ec2f62fcde Author: Alan Garny Date: Wed Nov 20 17:05:59 2019 +1300 Some minor cleaning up. commit 8e7f704456ecfcde47736d146a4c53c3b2a3c872 Author: Alan Garny Date: Wed Nov 20 16:29:25 2019 +1300 Simulation support (Python): properly handle the addition of a run to a simulation prior to running that simulation. commit 39954b74039bc42b48509f83d5eaf06fb5c52a16 Author: Alan Garny Date: Wed Nov 20 15:56:48 2019 +1300 Simulation support (Python): reworked our clearResults() wrapper. Indeed, it was working as expected from the GUI, i.e. the results were properly cleared, but not from a Python shell since we used to emit a signal that was only handled by our Simulation Experiment view. commit 1523fd27178ea68d4410b757b0a14ff540efc4bb Author: Alan Garny Date: Wed Nov 20 15:26:22 2019 +1300 Revert "Some minor cleaning up." This reverts commit 90288a41778e6f0cb51db61de73d627071658a20. commit 5ae000982104a0ed159d1525d2c217929e4cec02 Author: Alan Garny Date: Wed Nov 20 15:06:23 2019 +1300 Some minor cleaning up. commit 90288a41778e6f0cb51db61de73d627071658a20 Author: Alan Garny Date: Wed Nov 20 15:02:59 2019 +1300 Some minor cleaning up. commit 96c7109786c23aa4c3ccde3d37add0988daccbd0 Author: Alan Garny Date: Wed Nov 20 14:28:19 2019 +1300 Some minor cleaning up. commit 59178ab26ed0e65eb6fd7669b5bfdbf5adcf86ab Author: Alan Garny Date: Wed Nov 20 14:14:13 2019 +1300 Simulation support (Python): renamed resetParameters() to reset(). And allow for everything, or not, to be reset, i.e. mimic what the GUI can do. commit e3d183190b4dd41f1c8d003874dffe99ec1b286d Author: Alan Garny Date: Wed Nov 20 14:12:35 2019 +1300 Some minor cleaning up. commit b2b1b3628de377899f24d2a7e2f5868503859382 Author: Alan Garny Date: Wed Nov 20 14:04:21 2019 +1300 Some minor cleaning up. commit 6e27f9d6b4141305684fbbc15e5e52806a1183a7 Author: Alan Garny Date: Wed Nov 20 14:00:49 2019 +1300 Some minor cleaning up. It was last used in openRemoteSimulation() in [OpenCOR]/src/plugins/support/SimulationSupport/src/simulationsupportpythonwrapper.cpp, which is now gone. commit 6f701b063cfad6304bafe06936b3a0a5a58008d6 Author: Alan Garny Date: Wed Nov 20 13:57:39 2019 +1300 Some minor cleaning up. commit ec909942f43198f4446eb0b2ac446ccddbf78b86 Author: Alan Garny Date: Wed Nov 20 13:46:24 2019 +1300 Simulation support: merged our openSimulation and openRemoteSimulation Python wrappers. commit 9f0c9b24c714b7703bb91bc84e23e54114cd23de Author: Alan Garny Date: Wed Nov 20 12:06:40 2019 +1300 Some minor cleaning up. commit 555b9e00069d1ce436932bebb19978a72debef8b Author: Alan Garny Date: Wed Nov 20 11:29:16 2019 +1300 Python: updated our Lorenz Python script. Also handle remote files. commit d04a644d6e938e1593d4dd68969a4598993af4fe Author: Alan Garny Date: Wed Nov 20 11:10:57 2019 +1300 Some minor cleaning up. commit 471399db1bd24d201b7ee4335d06345643f166ce Author: Alan Garny Date: Wed Nov 20 10:46:01 2019 +1300 Some minor cleaning up. commit af84fb65982a6e9cb3c994c608acc0103ebc8e4c Author: Alan Garny Date: Wed Nov 20 10:45:44 2019 +1300 Simulation Experiment view: fixed a small issue with the tracking of the end of a simulation. If we were to run several simulations at the same time, we might have ended up with one of them having its progress updated *after* the simulation finished. commit 7056eaf2c9d5067206a42c4b07770fa4aaeb7787 Author: Alan Garny Date: Wed Nov 20 10:09:33 2019 +1300 Some minor cleaning up. commit 2676b35ecb46067dafc03cb14ef74427f037eb61 Author: Alan Garny Date: Wed Nov 20 09:41:13 2019 +1300 Python: updated our Lorenz Python script. Use our new OpenCOR module name. commit 08c7c1aeab53ace6dee7ad5ef3796f3d46d13470 Author: Alan Garny Date: Wed Nov 20 09:41:00 2019 +1300 Python: updated our Lorenz Python script. Don't generate a 3D plot, so that we can also run our script from a Python shell. commit b0a6ecc21152346be0366685d7409c949e6e6935 Author: Alan Garny Date: Wed Nov 20 09:40:07 2019 +1300 Python: respecting PEP 8 when it comes to the name of our OpenCOR module. commit 8dfd52aba0842f34a1c703b5c03fe8d8d17240a2 Author: Alan Garny Date: Wed Nov 20 09:38:46 2019 +1300 Some minor cleaning up. commit e629ca0bbd516e1fb53f98ffb8129273c362d60b Author: Alan Garny Date: Wed Nov 20 09:22:51 2019 +1300 Some minor cleaning up. In fact, and as a general rule, we should always use full class names in signals/slots. Simple as that. commit 0f0bc5a64b51fe40b46d86bb9613ba78d96c8f74 Author: Alan Garny Date: Wed Nov 20 09:19:11 2019 +1300 Python: PythonQt requires full class names for result types. commit 9ab91ae64bbd8cba9a468e3a62680c7a7b4176ba Merge: 0d2512b7e 4835353ca Author: Alan Garny Date: Wed Nov 20 09:16:42 2019 +1300 Python: PythonQt requires full class names for result types. commit 4835353ca4dde56fcd4f953156dfea740f3ef35a Author: David Brooks Date: Wed Nov 20 08:38:01 2019 +1300 Python: PythonQt requires full class names for result types. commit 0d2512b7e2c8373812f919647a9b1ed4002e75ae Author: Alan Garny Date: Tue Nov 19 19:05:29 2019 +1300 Python: updated our Lorenz Python script. commit 87a2257b51c5bda6580c08a0ce35d3c2894a7226 Author: Alan Garny Date: Tue Nov 19 18:38:49 2019 +1300 Some minor cleaning up. commit 4535f126f84013ffd3b94715bc6b5fcec4773968 Author: Alan Garny Date: Tue Nov 19 18:35:24 2019 +1300 Some minor cleaning up. commit 1ce2114b558ba04872f3009075b983bfad6b88a9 Author: Alan Garny Date: Tue Nov 19 18:23:52 2019 +1300 Some minor cleaning up. commit 50f1f0520a7e59b03c377822b3008fa22f885417 Author: Alan Garny Date: Tue Nov 19 18:23:41 2019 +1300 Some minor cleaning up. commit f94484a9663f6ccda45e0fd6507009ad7bf1564f Author: Alan Garny Date: Tue Nov 19 18:10:10 2019 +1300 Some minor cleaning up. commit 8df403c61574b29746488af7d32c16a34eadc4fb Author: Alan Garny Date: Tue Nov 19 18:08:53 2019 +1300 Python: updated our Lorenz Python script. commit 9419001f4d8aa850a1fef5e6e9e476d16085f670 Author: Alan Garny Date: Tue Nov 19 18:08:12 2019 +1300 Added a Lorenz COMBINE archive. commit 302371495c06edf7f1fdcfc637dd655af63293b6 Author: Alan Garny Date: Tue Nov 19 18:08:02 2019 +1300 Lorenz SED-ML file: added some title to our plots. commit 641af0ed1a94b28c9e7334ef9a6100a244863350 Author: Alan Garny Date: Tue Nov 19 15:09:31 2019 +1300 Some minor cleaning up. commit 9a6b83e77a16aa49acdbe871b62eb6b7d935720c Author: Alan Garny Date: Tue Nov 19 13:42:59 2019 +1300 Some minor cleaning up. commit 82b59e89ca47d20a19569e2ee8a530b068674e27 Author: Alan Garny Date: Tue Nov 19 13:27:43 2019 +1300 Some minor cleaning up. commit 48f052ec9039557bf28de4caedd1fda4f901540f Author: Alan Garny Date: Tue Nov 19 13:24:02 2019 +1300 Web Browser window: remove our support for Python. Indeed, there is, at this stage at least, no need for accessing our Web Browser window from Python. commit 82bceeaf9d2d7e7a209873677c75943749d9f540 Author: Alan Garny Date: Tue Nov 19 13:12:48 2019 +1300 Some minor cleaning up. commit e9a28d0bdc3ee0683ac914823ac729eaaf1a1f9f Author: Alan Garny Date: Tue Nov 19 11:46:36 2019 +1300 Some minor cleaning up. commit 29f78b7f53c17030edec0f08a45e6ab697915e4b Author: Alan Garny Date: Tue Nov 19 11:42:52 2019 +1300 Added a Lorenz CellML and SED-ML files, as well as a corresponding Python script and Jupyter notebook. The idea of the Python script will be to test all of our Python wrappers. commit 98eeeadb7bc6e654007a6e225bfef1302763e41a Author: Alan Garny Date: Tue Nov 19 09:40:04 2019 +1300 Some minor cleaning up. commit 33f3be81c8caf79b9be2e9d02dad6205a18ab8ba Author: Alan Garny Date: Tue Nov 19 09:26:58 2019 +1300 Some minor cleaning up. commit e60dc46ff5613fbda5ce5d0b85a70f51de60d8bc Author: Alan Garny Date: Mon Nov 18 15:25:14 2019 +1300 Some minor cleaning up. commit 741cdf3997f01111786a354a722cb56844984870 Author: Alan Garny Date: Mon Nov 18 15:07:00 2019 +1300 Some minor cleaning up. commit 0ef8fc0fb108f58e06be1d3ed6faed5a6bafa9c3 Author: Alan Garny Date: Mon Nov 18 14:47:51 2019 +1300 Some minor cleaning up. commit 5ef67f08d219d31553eb78d26f6678e23103eff6 Author: Alan Garny Date: Mon Nov 18 14:04:47 2019 +1300 Some minor cleaning up. commit 7c6ff6986ab6fc43bf75c6c9616c561a6677e672 Author: Alan Garny Date: Mon Nov 18 10:52:11 2019 +1300 Some minor cleaning up. commit cd01836b49560888c93c34e62031ece2ac4debd3 Author: Alan Garny Date: Fri Nov 15 18:51:39 2019 +1300 Check. commit 58d4d4beab55686f6e8bba8b193627ceffa4d41e Author: Alan Garny Date: Fri Nov 15 16:30:37 2019 +1300 Some minor cleaning up. commit 8aacb311dfce137145fce6cb5862d381715b0476 Author: Alan Garny Date: Fri Nov 15 16:13:46 2019 +1300 Some minor cleaning up. commit 303e83fe92eab90a65d01252d2d359634f34afe6 Author: Alan Garny Date: Fri Nov 15 16:07:57 2019 +1300 Some minor cleaning up. commit 66eeb036d8a550fdfdb67757413d88e30bfcf191 Author: Alan Garny Date: Fri Nov 15 16:01:03 2019 +1300 Some minor cleaning up. commit f51a69537a83ac4ac52175e2fd33b0b64a28c8c9 Merge: 85727a6e7 76fbc4c37 Author: Alan Garny Date: Fri Nov 15 12:44:43 2019 +1300 Merge branch 'master' into issue1255. commit 76fbc4c37a9727ecdd8f41538e94c4c23d22739d Merge: 73101f48d 890a115ed Author: Alan Garny Date: Fri Nov 15 12:42:40 2019 +1300 Some minor cleaning up. commit 890a115edf77dd179ce82e6d02adf61299c3ab28 Author: Alan Garny Date: Fri Nov 15 12:15:41 2019 +1300 Some minor cleaning up. commit 85727a6e7f9fa714560fde8966b21bbd1a9528bd Author: Alan Garny Date: Fri Nov 15 11:57:55 2019 +1300 Some minor cleaning up. mSimulationResults in SimulationData is not used anywhere...!? commit 309009d5b5e3c0acc251ad13e4e52512100dfe5e Merge: edbd8731e 73101f48d Author: Alan Garny Date: Fri Nov 15 11:37:26 2019 +1300 Merge branch 'master' into issue1255. commit 73101f48db26ad48a7a74f81a25acea6fb3e72cc Merge: 6be4bce7b bfb67dbcc Author: Alan Garny Date: Fri Nov 15 11:35:33 2019 +1300 Some minor cleaning up. commit bfb67dbcc4ea2eb624692825b8eeae39bc19c097 Author: Alan Garny Date: Fri Nov 15 11:01:25 2019 +1300 Some minor cleaning up. commit 3e7d14f0d47ba958b41f641cfd18f8bb423b53ee Author: Alan Garny Date: Fri Nov 15 11:01:21 2019 +1300 Some minor cleaning up. commit d1981409c0edbd819121c986ccd881040345c75e Author: Alan Garny Date: Fri Nov 15 11:01:09 2019 +1300 Some minor cleaning up. commit 8a08b0f0bed875c2d184314664441aea62f2232d Author: Alan Garny Date: Fri Nov 15 10:27:22 2019 +1300 Optimised our use of Q_OS_XXX. We "only" support Windows, Linux and macOS. So, if we, for example, check for Windows and Linux, then the only one left must be macOS, in which case there is no need to test for it. commit 6be4bce7bfb610061d08507fca9c0d2aff03c8ba Merge: 1a01626b1 652e833fb Author: Alan Garny Date: Thu Nov 14 19:19:17 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR (closes #2211). commit edbd8731e9fc14e57bded650c8c43b5ae339d20d Author: Alan Garny Date: Thu Nov 14 19:13:06 2019 +1300 Some minor cleaning up. commit b0db4d92e7a0da12573c015751ec25b7b3e2df4a Author: Alan Garny Date: Thu Nov 14 19:05:05 2019 +1300 Some minor cleaning up. commit 652e833fba18eed37e31239d703334343eba7630 Author: Alan Garny Date: Thu Nov 14 17:28:37 2019 +1300 Qt 5.12.5+: fixed an issue wit our property editor that would crash OpenCOR (#2211). commit 1fffe3f8c7273952395992fae46afc8ec4ba8ebd Author: Alan Garny Date: Wed Nov 13 17:57:56 2019 +1300 Some minor cleaning up. commit 177fd3b3b8b8fb9e96e74e52ad269cab86882d7a Author: Alan Garny Date: Wed Nov 13 17:55:13 2019 +1300 Some minor cleaning up. commit bcf00672f23717edd1ab4cce4b6057cce51f3bd8 Author: Alan Garny Date: Wed Nov 13 17:42:08 2019 +1300 Some minor cleaning up. commit ead196055e4d835c369d5f19bffb1cd365b91cf3 Author: Alan Garny Date: Wed Nov 13 17:41:22 2019 +1300 Some minor cleaning up. commit 727b3943e94ae45cf49ff6d07563e7284c697063 Author: Alan Garny Date: Wed Nov 13 17:07:51 2019 +1300 Some minor cleaning up. commit 439b155af1a7e3c2e6c9d3a67101f12253ddcdec Author: Alan Garny Date: Wed Nov 13 15:29:44 2019 +1300 Simulation Experiment view: some clarification. commit 6cd51cdfeeac96e2c16f0047df214c40b143d7ad Author: Alan Garny Date: Wed Nov 13 15:29:23 2019 +1300 Some minor cleaning up. commit 61737f228a74056bcc88f11d2cbd7a201db79f74 Author: Alan Garny Date: Wed Nov 13 15:12:11 2019 +1300 SimulationExperiment view: updated our translations. commit 9b72057d7660f88159e442780d2dfb03cf4a9f3c Author: Alan Garny Date: Wed Nov 13 14:52:44 2019 +1300 Some minor cleaning up. commit 23a6258b7f21467a4131218960278805f0e0f074 Author: Alan Garny Date: Wed Nov 13 14:21:55 2019 +1300 Some minor cleaning up. commit fbb323a18c8b02081b4ff5618510debca75253c8 Author: Alan Garny Date: Wed Nov 13 13:55:57 2019 +1300 Some minor cleaning up. commit d770b80ecee6af848e54936df0240134d534d444 Author: Alan Garny Date: Wed Nov 13 13:09:44 2019 +1300 Python: disable our Jupyer-related scripts in debug mode under Windows. commit 2b428f5bd0a727f2456a7d905b46e81b928c00bf Author: Alan Garny Date: Wed Nov 13 13:09:22 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit cf92cca986bc01361f0239cb67d37c84f1a2265c Author: Alan Garny Date: Fri Nov 8 14:46:42 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 8a3246820c2cb02b64019b69bd0cd7842969f09a Author: Alan Garny Date: Fri Nov 8 14:45:08 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit a5f33b56a107c11ddde3aeb9a1d0a241f2c4c303 Author: Alan Garny Date: Fri Nov 8 14:39:06 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 46f003dcee4ce14394f5dd41102755a585f3d3e3 Author: Alan Garny Date: Fri Nov 8 12:47:09 2019 +1300 Python: disable the PythonConsole window in debug mode under Windows. commit 3687c17fb67ca972fdd9c6c9db1a442f57378c3b Author: Alan Garny Date: Mon Nov 4 15:28:34 2019 +0900 PythonPackages: binaries for version 3.7.5. commit 3adfa5b17e766e9d56c812ae341dc3360bf991fa Author: Alan Garny Date: Mon Nov 4 15:17:59 2019 +0900 Python: binaries for version 3.7.5. commit b9b69f54a5cf34fb83523fd44ea704f8479a24c6 Author: Alan Garny Date: Mon Nov 4 14:46:40 2019 +0900 Python: binaries for version 3.7.5. commit 89817670500088ab92b06dd795a694ac906e3e28 Author: Alan Garny Date: Mon Nov 4 14:17:58 2019 +0900 Python: update to version 3.7.5 (#1255). commit 934708e087102d89591f686b67bf275ee24d690c Author: Alan Garny Date: Mon Nov 4 12:43:37 2019 +0900 Python: track the proper version of Python! commit a2f69c91d32501a7dd91d8b917999896dec2ec1b Author: Alan Garny Date: Mon Nov 4 12:21:13 2019 +0900 Python: binaries for version 3.7.5. commit 61af6bcdc75f4ccda0d2ee5dfc1e8fe910ff0496 Merge: 0b851e28b eba254c1f Author: Alan Garny Date: Mon Nov 4 12:04:57 2019 +0900 Python: update to version 3.7.5. commit eba254c1f3056b8f739c70bbdc2406a90dbef045 Author: David Brooks Date: Mon Nov 4 15:47:28 2019 +1300 Python: update to version 3.7.5 (#1255). commit 0b851e28b0947efab89f68be4d07eb59042ed1ed Merge: ccfddeb2b 1a01626b1 Author: Alan Garny Date: Mon Nov 4 09:45:13 2019 +0900 Merge branch 'master' into issue1255. commit 1a01626b1a4438a4ee63dbfe40ad0518d3619d9c Merge: 3bb61195f 721cee407 Author: Alan Garny Date: Mon Nov 4 09:44:25 2019 +0900 QScintilla: upgraded to version 2.11.3 (closes #2208). commit 721cee4072cf12859fc150feb05e8e89c6b1f026 Author: Alan Garny Date: Mon Nov 4 09:18:16 2019 +0900 Slight update to our downloads page (#2208). commit 6faeda4309117e631b720e48250c5dd9d6e74472 Author: Alan Garny Date: Mon Nov 4 09:18:00 2019 +0900 QScintilla: binaries for version 2.11.3 (#2208). commit 94341e39d990f573a0045879fe00f91502f926fd Author: Alan Garny Date: Mon Nov 4 09:06:26 2019 +0900 QScintilla: upgraded to version 2.11.3 (#2208). commit ccfddeb2ba607b7645ae239fba9820931e98aa88 Author: Alan Garny Date: Sun Nov 3 11:41:08 2019 +0900 Some minor cleaning up. commit d4213fb7f3436dd8d194a355dc626b4ca65d9666 Author: Alan Garny Date: Sun Nov 3 11:36:58 2019 +0900 Some minmor cleaning up. commit 4d5b2f0f02deba426a8cce94404954024fbd34c2 Author: Alan Garny Date: Sun Nov 3 11:34:31 2019 +0900 Revert "Some minor cleaning up." This reverts commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7. commit e1cd277a1988da6bd7e24c1d8ce8915970ed00b7 Author: Alan Garny Date: Sun Nov 3 11:30:28 2019 +0900 Some minor cleaning up. commit 866a2f5297e287838c3d5bb6b0d2049956114c56 Author: Alan Garny Date: Sun Nov 3 10:55:44 2019 +0900 Some minor cleaning up. commit 02879e98d5a756f35bc804c7b0aa96cd596a531e Author: Alan Garny Date: Sun Nov 3 10:53:02 2019 +0900 Some minor cleaning up. commit ef63de284fcce11b4ffe3b19b6b61ecafecf4588 Merge: 104584f0e 3bb61195f Author: Alan Garny Date: Sun Nov 3 10:44:54 2019 +0900 Merge branch 'master' into issue1255. commit 3bb61195fa3d40c6dec38b3d201acbadaffdb232 Merge: 2be730ae2 5cf3abd29 Author: Alan Garny Date: Sun Nov 3 10:44:11 2019 +0900 Some minor cleaning up. commit 5cf3abd293298a54956cbe1193c7dc141b3345a5 Author: Alan Garny Date: Sun Nov 3 10:18:52 2019 +0900 Some minor cleaning up. commit 104584f0e2f542dd6caaf6bd3dff275bcf3ea8eb Author: Alan Garny Date: Sun Nov 3 09:33:13 2019 +0900 Python: make sure that our Python home directory exists. commit 4fbf21a924915ab561b933332905e511e52e4e20 Author: Alan Garny Date: Sun Nov 3 09:28:17 2019 +0900 Python: make sure that our Python home directory exists. Indeed, it's causing us problems on Windows since [OpenCOR]/python existed...! commit 6c7e4bcbd60272a8218190a9fc42edb4f1c8d82b Author: Alan Garny Date: Sun Nov 3 09:27:33 2019 +0900 Python: make sure that our Python home directory exists. commit c726d92547f77c17e8ddf39e839e24db357c6f25 Author: Alan Garny Date: Sat Nov 2 23:26:17 2019 +0900 Some minor cleaning up. commit fcb75e14bac595274c3b56cd486915c0c45ee324 Author: Alan Garny Date: Sat Nov 2 21:40:55 2019 +0900 Some minor cleaning up. commit bce956fed6f3845c4bf76e665fae2c742efaaa55 Author: Alan Garny Date: Sat Nov 2 21:35:59 2019 +0900 Some minor cleaning up. commit 95c1cffe44bf69237e49c07f15dc33be2eedc178 Author: Alan Garny Date: Sat Nov 2 17:01:56 2019 +0900 Some minor cleaning up. commit f427489eb66dd45c6c3e7545f917e13a14e5efde Author: Alan Garny Date: Sat Nov 2 16:47:01 2019 +0900 Some minor cleaning up. commit 01b20dbf844d2a52c1e69eae9357286bdf47cc6d Author: Alan Garny Date: Sat Nov 2 15:24:17 2019 +0900 Some minor cleaning up. commit 9ed9adf8b1dd887f86a5cb45884d0ba71eb9e72f Author: Alan Garny Date: Sat Nov 2 12:42:45 2019 +0900 Some minor cleaning up. commit 586cb3860defa36308f2ae1616179eb4bfd8e19e Author: Alan Garny Date: Sat Nov 2 12:02:29 2019 +0900 Some minor cleaning up. commit 669ff1b4b9e128e04bb913aef471130e2d252f0c Author: Alan Garny Date: Sat Nov 2 08:04:12 2019 +0900 Some minor cleaning up. commit afa06adce3280b4b68d9176cd23c396fe7a4decb Author: Alan Garny Date: Sat Nov 2 07:55:22 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 7d1eb56d79090a3002ea073cc660fd4fe46ee357 Author: Alan Garny Date: Sat Nov 2 07:53:40 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 5809a68b9133906edea760ea5e6c68421343b945 Author: Alan Garny Date: Sat Nov 2 07:48:11 2019 +0900 Some minor cleaning up. commit 3436e0ef1e343f890c92b274f96b75f70ae2427d Author: Alan Garny Date: Fri Nov 1 23:56:02 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 590a1fd93f2d78bb5932466a13391d5e1dee9e14 Author: Alan Garny Date: Fri Nov 1 23:47:28 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit c1f6deecd6e9959bc07600e11beeb239c93139ad Author: Alan Garny Date: Fri Nov 1 23:45:47 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit df48d3e6076f23d553ff886d92f4042fd7680d7a Author: Alan Garny Date: Fri Nov 1 18:10:18 2019 +0900 Some minor cleaning up. commit c9d89622bf33b7906a9817e6e44fcda7a1dc0e22 Author: Alan Garny Date: Fri Nov 1 17:32:24 2019 +0900 Python: moved the `runjupyter` to our Python script directory. commit 476ef936c8cd115faa2962e824add62d3d210c3b Author: Alan Garny Date: Fri Nov 1 16:23:30 2019 +0900 Some minor cleaning up. commit 9f6fc04bb9c136a24f6a72f570bdbc7f56a5bed7 Author: Alan Garny Date: Fri Nov 1 16:15:53 2019 +0900 Some minor cleaning up. commit 06941a50e7af02858c68375b738faec9a7bbc21f Author: Alan Garny Date: Fri Nov 1 16:10:55 2019 +0900 Some minor cleaning up. commit 7b9ed093ecc5208d54111de40be9db5874739599 Author: Alan Garny Date: Fri Nov 1 16:09:10 2019 +0900 Python: renamed our `runpython` script to `pythonshell`. commit 37bbfefaa71b462303f5717d34da847d90b752b0 Author: Alan Garny Date: Fri Nov 1 16:05:45 2019 +0900 Python: renamed our `runpython` script to `pythonshell`. commit 2d2e21fd4050bcb0d8d1c0527dcf861ba40b37fb Author: Alan Garny Date: Fri Nov 1 14:00:58 2019 +0900 Python: make sure that our scripts support spaces in the OpenCOR path. commit c3f7ff9bf5d03436bf60a72703fd8c84a2fe40ee Author: Alan Garny Date: Fri Nov 1 13:56:20 2019 +0900 Python: merged `setpythonpath` into `runjupyter` since, now, it's only used there. commit 417a7b888bd6fcbd216e8b50b7a0a6faeb3a9ad1 Author: Alan Garny Date: Fri Nov 1 12:27:39 2019 +0900 Python package: new binaries for version 4.7.4 (#1255). commit 8bc603fe70629249d8eedef134e84c764da05c92 Merge: e7597e8ad d3b802067 Author: Alan Garny Date: Fri Nov 1 12:15:32 2019 +0900 Run the set_python_path.py script when starting OpenCOR (closes #2205). commit d3b8020676cb61bd37b2f88761b516353d06f5c0 Author: David Brooks Date: Fri Nov 1 14:41:08 2019 +1300 Python: run the `set_python_path` script at initialisation time and no longer during installation or when running the Python shell (#2205). commit 1a9301f4dfe04755ab3c30980af45882a077966c Author: David Brooks Date: Fri Nov 1 11:24:16 2019 +1300 Python: tidy code (#2205) commit e7597e8ad25d768f3cf9af586981177b7f7d7cb9 Author: Alan Garny Date: Fri Nov 1 09:31:02 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 58ef84ef1588c4abc8dd2deaba075adba6b917f7 Author: Alan Garny Date: Fri Nov 1 09:29:24 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 3eb2a5d9c3925ddeac0d8d9fe723b5c6f6596283 Author: Alan Garny Date: Fri Nov 1 09:13:49 2019 +0900 Python: removed the sensitivity analysis code. Indeed, this has nothing to do with issue #1255, but issue #2206. commit 8808a8e9e42831c951082b6e5055925302a8af05 Author: Alan Garny Date: Wed Oct 30 20:44:10 2019 +0900 Python: remove the SolverSupport plugin, which is not used anywhere. commit 5bba18ca8b1bad724ac8d98f88c1f8b84ac37da0 Author: Alan Garny Date: Wed Oct 30 17:55:49 2019 +0900 Some minor cleaning up. commit 3932af3fab4846176ce86f83f2196afe0737b564 Author: Alan Garny Date: Wed Oct 30 17:44:56 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit ba8d83e7fd386ae96af29ea37e2e0e84b37d3543 Author: Alan Garny Date: Wed Oct 30 17:37:11 2019 +0900 Python: cleaned up the code for the PythonSupport plugin. commit 700f5daeca26b3811fb12a3be27ae3a689da6a47 Author: Alan Garny Date: Wed Oct 30 16:57:33 2019 +0900 Python: cleaned up the code for the PythonQtSupport plugin. commit fc5f70dfb9181f9ebd1aa1990e2c3a20c0466266 Author: Alan Garny Date: Wed Oct 30 16:46:24 2019 +0900 Some minor cleaning up. commit b6a77b79b6e4363a9b3fc97432c3557f0b829aa0 Author: Alan Garny Date: Wed Oct 30 16:29:14 2019 +0900 Some minor cleaning up. commit ae4767057a9d25830db39e3758f25d8f87726aaa Author: Alan Garny Date: Wed Oct 30 15:39:55 2019 +0900 Some minor cleaning up. commit 8cacd17f14c5bb9d39f30db36260b3af6bb1b786 Author: Alan Garny Date: Wed Oct 30 14:36:00 2019 +0900 Some minor cleaning up. commit 21ad718ab5bb09e27d50516732c8ecffb86cf5cc Merge: 1a89a681d 2be730ae2 Author: Alan Garny Date: Wed Oct 30 14:30:35 2019 +0900 Merge branch 'master' into issue1255. commit 2be730ae23ec2911dc8ca64cadb116ddbf9c678a Merge: 11fd66a6f 216df6d95 Author: Alan Garny Date: Wed Oct 30 14:30:06 2019 +0900 Some minor cleaning up. commit 216df6d95736d3950ea945bb5ef086bf70410c62 Author: Alan Garny Date: Wed Oct 30 14:04:29 2019 +0900 Some minor cleaning up. commit 1a89a681de3c9c0ede2d086f2c8cf57c6a9902d5 Author: Alan Garny Date: Wed Oct 30 13:48:48 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit a829f58ad595facefdf4ab8e1a5fa109f42f8c15 Author: Alan Garny Date: Wed Oct 30 13:12:40 2019 +0900 Some minor cleaning up. commit db2fcfcd5f79caa95a0bfa73934f9344e20c20bc Merge: 52e066cad 11fd66a6f Author: Alan Garny Date: Wed Oct 30 12:37:40 2019 +0900 Merge branch 'master' into issue1255. commit 11fd66a6f53d8c7d7619f8f93ecc1e3e464f5415 Merge: 647590818 dd3b2848d Author: Alan Garny Date: Wed Oct 30 12:35:55 2019 +0900 Some minor cleaning up. commit dd3b2848d09fb0c61dadcc43115e5668e326145c Author: Alan Garny Date: Wed Oct 30 12:12:29 2019 +0900 Some minor cleaning up. commit 52e066cad34b6c522c379e3a307330c4eaaad38b Author: Alan Garny Date: Wed Oct 30 12:07:12 2019 +0900 Python: cleaned up the code for the WebBrowserWindow plugin. commit 86b59af18f0fc55b1d945d1a958da2a9b01fb70b Author: Alan Garny Date: Wed Oct 30 11:25:37 2019 +0900 Python: cleaned up the code for the PythonShell plugin. commit 60dc1e51d9f50c301a6adbb8bc6b109d31b83758 Author: Alan Garny Date: Wed Oct 30 11:21:17 2019 +0900 Python: some minor cleaning up. commit b7ed4c58578030810a54e6355654f4e5a923b98b Author: Alan Garny Date: Wed Oct 30 11:20:49 2019 +0900 Python: some minor cleaning up. commit 00f7becffc3ae002c58932f563ef6dbbd5f56fb9 Author: Alan Garny Date: Wed Oct 30 10:20:28 2019 +0900 Python: cleaned up the code for the Python Console window. commit b75f7cfe1f1c4c4a768fe444e7a125cf0eaac95d Author: Alan Garny Date: Wed Oct 30 10:06:16 2019 +0900 Python: cleaned up the code for the Python Console window. commit 32d6ccd31a6b37eb3b27f29e3b22dc2bc38095bc Author: Alan Garny Date: Wed Oct 30 09:34:48 2019 +0900 Some minor cleaning up. commit bc80eb92bffe50db50c9e242c3a873222b4ba99b Merge: e734433c5 647590818 Author: Alan Garny Date: Tue Oct 29 23:19:30 2019 +0900 Merge branch 'master' into issue1255. commit 647590818266a85e9521a4776620bae76684ba95 Merge: cb1248213 d62d645ea Author: Alan Garny Date: Tue Oct 29 23:15:35 2019 +0900 Make Clang-Tidy happy. commit d62d645ea67db5399e34786b4dc95a3c48c54206 Author: Alan Garny Date: Tue Oct 29 22:01:48 2019 +0900 Make Clang-Tidy happy. commit e734433c5af1ae4e0547b3e0408ef49a4b906cf3 Merge: b0609b4c2 cb1248213 Author: Alan Garny Date: Fri Oct 25 21:52:34 2019 +1300 Merge branch 'master' into issue1255. commit cb124821308c3b56a908fa8eaf2d70f6a9616578 Merge: 7875883d6 5f146607a Author: Alan Garny Date: Fri Oct 25 21:45:30 2019 +1300 Cleaning up. commit b0609b4c2653ed9674ad48f701b6adfcbf4b0c7d Author: Alan Garny Date: Fri Oct 25 19:58:59 2019 +1300 Some minor cleaning up. commit 5f146607a571b0fa07204dfcf3302958d3ee1143 Author: Alan Garny Date: Fri Oct 25 19:52:09 2019 +1300 Make Clang-Tidy happy. commit 5f5a60f6a7efe4adff82ed5b7532b7e85f086bf0 Author: Alan Garny Date: Fri Oct 25 19:49:03 2019 +1300 Make Clang-Tidy happy. commit b6ea05d79478e21c32b9dbcfab00fd1d9b00135c Author: Alan Garny Date: Fri Oct 25 19:39:00 2019 +1300 Make Clang-Tidy happy. commit 8d410e77b0c329996e9ee12d6dd15710de44b3bb Merge: 4ce1ec636 6f501f554 Author: Alan Garny Date: Fri Oct 25 19:25:44 2019 +1300 Fix bad cleaning... commit 4ce1ec636178b2f4ef9b075bbdde8caababe45dc Merge: c82cb4096 91d4ffbc1 Author: Alan Garny Date: Fri Oct 25 19:24:40 2019 +1300 Give our Python modules a filename otherwise IPython tracebacks are noisy. commit 6f501f554ca3a1cf5b540f13a470ab607d4cf28c Author: David Brooks Date: Fri Oct 25 15:21:10 2019 +1300 Python: fix bad cleaning... commit 67469cc42c2f7e5b852c83f720d6f51640e60c24 Author: Alan Garny Date: Fri Oct 25 15:15:04 2019 +1300 Make Clang-Tidy happy. commit 6595a1bcb962fa4f16fdf653d6a93d023952b7b4 Author: Alan Garny Date: Fri Oct 25 15:11:49 2019 +1300 Make Clang-Tidy happy. commit 5b192f4c36df5bca5a7d5ff6ce234c1878b7f64b Author: Alan Garny Date: Fri Oct 25 15:08:25 2019 +1300 Make Clang-Tidy happy. commit 91d4ffbc1b44c4fa2cc5c1a45d6b9c6117c26c29 Author: David Brooks Date: Fri Oct 25 15:07:13 2019 +1300 Python: give our modules a filename otherwise IPython tracebacks are noisy. commit 4bcd640cc101ac8bcda8c39a503f30f5b8c93c73 Author: Alan Garny Date: Fri Oct 25 14:59:03 2019 +1300 Make Clang-Tidy happy. commit 2277589a3674350af8de02b2b23a9405177902be Author: Alan Garny Date: Fri Oct 25 12:59:47 2019 +1300 Make Clang-Tidy happy. commit c82cb40963d11d8e09cba269931df1e236cc60ba Author: Alan Garny Date: Fri Oct 25 12:42:20 2019 +1300 Make Clang-Tidy happy. commit 4025159ca631fcf61f45c3678227dc63e91d8589 Author: Alan Garny Date: Fri Oct 25 08:38:01 2019 +1300 Python: make sure that our test Zinc window loads before our Python Console window. commit c19ca691e87e61263047ca53c719051fdc7e4884 Author: Alan Garny Date: Thu Oct 24 20:02:06 2019 +1300 Some minor cleaning up. commit e95c38fb6d011529e8d77b567faf3efef93d4f3b Author: Alan Garny Date: Thu Oct 24 19:56:15 2019 +1300 Some minor cleaning up. commit 665da917f96906d880747a3a49c63a079252e785 Author: Alan Garny Date: Thu Oct 24 19:44:20 2019 +1300 Some minor cleaning up. commit afb62d754463f2326978f8c2c8a3d8af837e49cf Author: Alan Garny Date: Thu Oct 24 19:29:35 2019 +1300 Clang-Tidy: some new checks (that we don't want). commit 83828dd179b81384f962ee3296f7ee84e68cf569 Author: Alan Garny Date: Thu Oct 24 19:11:46 2019 +1300 Some minor cleaning up. commit f9d8466a05bc1a27bc72a44e8312f685d5232e61 Author: Alan Garny Date: Thu Oct 24 18:12:33 2019 +1300 Core::openRemoteFile(): don't rely on our file manager to create a local copy of our remote file. Indeed, to call FileManager::create() works, but then to get the file name we need to handle the fileCreated signal, which we can't using Core::openRemoteFile(). So, instead, we "manually" create a local copy of the remote file. commit d00fb04257e30853c99c6ef901f38b00606c6633 Author: Alan Garny Date: Thu Oct 24 17:47:38 2019 +1300 Some minor cleaning up. Fogot to remove that line! commit 657980612ac10d0b0aeb54723ded0bf5670ddd5b Author: Alan Garny Date: Thu Oct 24 17:45:28 2019 +1300 Some minor cleaning up. commit 0e9a5016aa37a4099ae15b77be648b152e97c59d Author: Alan Garny Date: Thu Oct 24 16:46:55 2019 +1300 Python: our `runpython` script now needs to start the `PythonShell` plugin. See https://github.com/opencor/opencor/issues/1255#issuecomment-545729293. commit 9794e18256b9414eb5c5231cfe85f25bf390c1ec Author: Alan Garny Date: Thu Oct 24 16:42:39 2019 +1300 Revert "Some minor cleaning up." Python doesn't like the spaces around `connection_file`! See https://github.com/opencor/opencor/issues/1255#issuecomment-545728808. commit 6f140c7fd9b6479bbd72fc46661776fe23d765c3 Author: Alan Garny Date: Thu Oct 24 16:39:32 2019 +1300 PythonPackages: updated our binaries. This is following PR agarny/opencor/#7. commit 0da9f975c83b6db9ed3c4ff8c2aba815ff186c46 Merge: 0e4e51147 6a009f154 Author: Alan Garny Date: Thu Oct 24 16:06:52 2019 +1300 Fix for scrambled matplotlib display. commit 0e4e511470cfa407ea6f668eb08a3785007a9e71 Author: Alan Garny Date: Thu Oct 24 15:59:03 2019 +1300 Python: make sure that `./jupyterconsole` works fine. commit 06d4e61549500c77e6650c179134dac0ca295278 Author: Alan Garny Date: Thu Oct 24 15:43:25 2019 +1300 Some minor cleaning up. commit 95f6279f78454ee7162e9ea0cb5eccdcd5c92f00 Author: Alan Garny Date: Thu Oct 24 15:39:23 2019 +1300 Some minor cleaning up. commit a86786eb8f11b220fe3e60e0e58e1f499edfa888 Author: Alan Garny Date: Thu Oct 24 14:17:30 2019 +1300 Some minor cleaning up. commit 19618e613fa3902f854b6cf7003ba48710a37784 Author: Alan Garny Date: Thu Oct 24 14:12:56 2019 +1300 Some minor cleaning up. commit 930c47c2f4678f3c12c3b4afa6b105490e39ba17 Author: Alan Garny Date: Thu Oct 24 13:56:45 2019 +1300 Partly revert commit cff17fc98. Indeed, by default it would have been equivalent to elementsAttributes.values() and not elementsAttributes.keys() as we want. commit cff17fc98d75c2d519b0954dda5a27f594490214 Author: Alan Garny Date: Thu Oct 24 13:46:51 2019 +1300 Some minor cleaning up. commit 6a009f154e555820ea811d770c3ac7e24120e51b Merge: 78757eee4 ad9ca98c6 Author: David Brooks Date: Thu Oct 24 13:34:44 2019 +1300 Merge branch 'issue1255' into djb-1255 commit 78757eee4ba9e1166c99c30a9e9d6e203e9ab031 Author: David Brooks Date: Thu Oct 24 13:32:39 2019 +1300 Python: fix Matplotlib v3 output under PythonQt. commit 9d0b6956d6b67f0efeed6d7a3b8333b2c383d6eb Author: Alan Garny Date: Thu Oct 24 11:24:18 2019 +1300 Some minor cleaning up. commit a8075e98438ac0b27c575d05ac850f90301ca9f5 Author: David Brooks Date: Thu Oct 24 11:04:33 2019 +1300 Python: fix typo in PythonQt changes for Matplotlib. commit ad9ca98c6979dbe02b2fae16d177fc7693477716 Author: Alan Garny Date: Wed Oct 23 18:26:16 2019 +1300 Some minor cleaning up. commit 328d313986cbcfa164c2831891d9fe4d5b39f4a9 Author: Alan Garny Date: Wed Oct 23 18:19:39 2019 +1300 Some minor cleaning up. commit 2c216b1d61a2cd1e3dc5e57280d3338830a59a41 Author: Alan Garny Date: Wed Oct 23 18:13:09 2019 +1300 Some minor cleaning up. commit 3071e118fef905913425dc9de3b38b465e881c21 Author: Alan Garny Date: Wed Oct 23 18:12:14 2019 +1300 Some minor cleaning up. commit 136fa624771dcb8b2f5810630dc8cbab0b4efa33 Author: Alan Garny Date: Wed Oct 23 18:07:43 2019 +1300 Some minor cleaning up. commit b9c965d5c60342bab0c73c6c8a3271a40140d3df Author: Alan Garny Date: Wed Oct 23 15:31:52 2019 +1300 Some minor cleaning up. Matching what we have in CentralWidget::openRemoteFile(). commit b22d59c335e9968bcbcbeb92f5bfb8b7c7115453 Merge: 7a9aec54f 7875883d6 Author: Alan Garny Date: Wed Oct 23 12:55:48 2019 +1300 Merge branch 'master' into issue1255. commit 7875883d6cc33c83135dbcb8034e6559397a4284 Merge: db8c07f34 3c27c9a7b Author: Alan Garny Date: Wed Oct 23 12:53:25 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (closes #2198). commit 3c27c9a7b7c55ed15a403369848afc2e840dc2ac Author: Alan Garny Date: Wed Oct 23 12:30:25 2019 +1300 Slight update to our downloads page (#2198). commit c5c9975e999c0faa523473e5c5bdc408010a02ce Merge: 1884f5e3e db8c07f34 Author: Alan Garny Date: Wed Oct 23 12:28:47 2019 +1300 Merge branch 'master' into issue2198. commit 1884f5e3e97747f05973bec3547fbee3e71b7205 Author: Alan Garny Date: Wed Oct 23 12:27:56 2019 +1300 SUNDIALS: binaries for version 5.0.0 (#2198). commit db8c07f34bb808cd91809cb19be23eba38acacef Merge: 4e60f99bd da1a01211 Author: Alan Garny Date: Wed Oct 23 12:24:53 2019 +1300 Mesa: upgraded to version 19.2.1 (closes #2197). commit f511f90fd24df90e04a1006b790da80ec6657f84 Author: Alan Garny Date: Wed Oct 23 12:19:28 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (#2198). commit c5d793f65568ad5297543f3e9ef32695ddfc1d54 Author: Alan Garny Date: Wed Oct 23 12:13:41 2019 +1300 SUNDIALS: upgraded to version 5.0.0 (#2198). commit da1a0121193c4247360ac179eb317ba2cca598c3 Author: Alan Garny Date: Wed Oct 23 12:03:14 2019 +1300 Slight update to our downloads page (#2197). commit 5f0a86132438b6ebbfa3c91361d40d9eebee56fc Author: Alan Garny Date: Wed Oct 23 11:59:16 2019 +1300 Mesa package: binary for version 19.2.1 (#2197). commit b209f154cf96657b3d6e9d233e41249cfbc50f2a Author: Alan Garny Date: Wed Oct 23 11:43:56 2019 +1300 Mesa: upgraded to version 19.2.1 (#2197). commit 7a9aec54f27b9ac2082ff6132608872a6d3bc215 Author: Alan Garny Date: Wed Oct 23 11:14:18 2019 +1300 Some minor cleaning up. commit 64e936eff9edcb73f1e914399ae4f2a60ac11362 Author: Alan Garny Date: Wed Oct 23 11:12:22 2019 +1300 Python: no need for a call to `SetDllDirectoryW()` anymore. commit e1fdbfd113c3b0b3a0910d56811fbe8b63e3222b Author: Alan Garny Date: Wed Oct 23 11:08:41 2019 +1300 Some minor cleaning up. commit 5c72467701096994ce9d1ccc6941d7af39496b0c Author: Alan Garny Date: Tue Oct 22 17:20:45 2019 +1300 Some minor cleaning up. commit 0e56367adac220ccc05094df283bdf531e9cd638 Merge: af8ee0d7d 4e60f99bd Author: Alan Garny Date: Tue Oct 22 17:06:23 2019 +1300 Merge branch 'master' into issue1255. commit 4e60f99bd6b03b880de843d1522ab38dce4a7963 Author: Alan Garny Date: Tue Oct 22 17:05:41 2019 +1300 Some minor cleaning up. commit af8ee0d7d822249670a357b00ff995c715bd8809 Author: Alan Garny Date: Tue Oct 22 16:59:56 2019 +1300 Some minor cleaning up. commit a483e516cdd8e64b7dc5abda58fa1fa0234c5ac9 Merge: 9b99e6443 7d36fb04f Author: Alan Garny Date: Tue Oct 22 16:44:23 2019 +1300 Merge branch 'issue1255' of https://github.com/agarny/opencor into issue1255 commit 9b99e64433a37ce10190ebaac0015af5700eb1d7 Merge: 7914033e9 f1f1b0c19 Author: Alan Garny Date: Tue Oct 22 16:43:52 2019 +1300 Merge branch 'master' into issue1255. commit 7914033e925934c77621c1205ce14406e0cec5c6 Author: Alan Garny Date: Tue Oct 22 16:41:31 2019 +1300 Some minor cleaning up. commit f1f1b0c192454206fdbc7da9c07820944b210031 Author: Alan Garny Date: Tue Oct 22 16:37:51 2019 +1300 Some minor cleaning up. commit 4de15ba7afd744793dd04d768fc853da91d0e73d Author: Alan Garny Date: Tue Oct 22 16:16:43 2019 +1300 Some minor cleaning up. commit c80733c7516d9ca26d9c9c52a7b992a7244b41fc Author: Alan Garny Date: Tue Oct 22 16:16:40 2019 +1300 Some minor cleaning up. commit 9f98faa7678b0f04dc1dc40c2fe3e77f33f73427 Author: Alan Garny Date: Tue Oct 22 16:16:30 2019 +1300 Some minor cleaning up. commit db55bf84fccc1d554a1a529cf873ae732d8c0789 Author: Alan Garny Date: Tue Oct 22 16:16:27 2019 +1300 Some minor cleaning up. commit 7d36fb04fc9e3e3b531739d597e8348987139c92 Merge: 52f4117fe f6f575400 Author: Alan Garny Date: Tue Oct 22 15:20:29 2019 +1300 Merge branch 'issue1255' of https://github.com/agarny/opencor into issue1255 commit 52f4117fe901063de080a27e242cc2c8ab724661 Merge: 6e85cb0cf f5e794870 Author: Alan Garny Date: Tue Oct 22 15:20:03 2019 +1300 Merge branch 'master' into issue1255. commit 6e85cb0cf1eee613d5b3cc788c7e7a2d5f3a7e36 Author: Alan Garny Date: Tue Oct 22 15:17:57 2019 +1300 Some minor cleaning up. commit f5e794870b4095da068b582da245dd3707264159 Author: Alan Garny Date: Tue Oct 22 15:10:47 2019 +1300 Some minor cleaning up. commit f6f57540058579b0b626230d6fc35c41b7367db5 Author: Alan Garny Date: Tue Oct 22 14:48:15 2019 +1300 Some minor cleaning up. commit 5fc6c3cefcf13249c62bb5e73e2923023b2ef7b9 Merge: f53b0b0a0 9985e5f4e Author: Alan Garny Date: Tue Oct 22 14:10:07 2019 +1300 Merge branch 'master' into issue1255. commit f53b0b0a03ed1d0d3a0e4aa98884857ef49b80fe Author: Alan Garny Date: Tue Oct 22 14:09:27 2019 +1300 Some minor cleaning up. commit 9985e5f4e8c5fc975e252101e7091b9f2eaddb03 Author: Alan Garny Date: Tue Oct 22 14:08:34 2019 +1300 Some minor cleaning up. commit 6f930be87427a2671a8d0198982c9c3b534f5800 Author: Alan Garny Date: Tue Oct 22 14:08:07 2019 +1300 Some minor cleaning up. commit afe339abaa4d0a17dfe1938adbeee86d71c4cebe Author: Alan Garny Date: Tue Oct 22 13:34:45 2019 +1300 Python package: new binaries for version 3.7.4. commit f3bf2f4bc4832bfb49f7e9062d03a22f247a1e1d Merge: 2ceaf736f c1f3df0c9 Author: Alan Garny Date: Tue Oct 22 13:17:05 2019 +1300 Merge branch 'master' into issue1255. commit c1f3df0c91d8ca0d8509289b0807d72356d24839 Merge: f68b136cc 3d34c95b6 Author: Alan Garny Date: Tue Oct 22 13:11:53 2019 +1300 Some minor cleaning up. commit 2ceaf736f9a81ecf575e006ab9b07957502e5a66 Author: Alan Garny Date: Tue Oct 22 13:10:34 2019 +1300 Some minor cleaning up. commit 3d34c95b60350ff76eafe759e715f24fec7d018c Author: Alan Garny Date: Tue Oct 22 12:31:47 2019 +1300 Some minor cleaning up. commit 4bddf4a5a7198383d14b8e6f635db9b3bb42b97e Author: Alan Garny Date: Tue Oct 22 10:55:48 2019 +1300 Some minor cleaning up. commit 6761c07fc4943766d11be9e370dbb34032d31b5e Author: Alan Garny Date: Tue Oct 22 10:45:10 2019 +1300 Some minor cleaning up. commit 4c79a4e81e5e09b18951c6cd7e02def57df65943 Author: Alan Garny Date: Tue Oct 22 10:26:51 2019 +1300 Some minor cleaning up. commit fe193545a1f72ef47ce619495d2251c6327a4254 Author: Alan Garny Date: Mon Oct 21 19:10:13 2019 +1300 Some minor cleaning up. commit a84a9aada5ebae621dbc28e723746a5eda4cf19e Author: Alan Garny Date: Mon Oct 21 17:32:52 2019 +1300 Some minor cleaning up. commit 09fc0d6d00f52a742ab69efcb898a38f542a2716 Author: Alan Garny Date: Mon Oct 21 16:21:13 2019 +1300 Some minor cleaning up. commit 127aed2987211a52d582d3d300844b38350ec6ff Author: Alan Garny Date: Mon Oct 21 16:08:07 2019 +1300 Some minor cleaning up. commit 25ecc1fe8eb1ac4e59a606e14eba44104bb9d793 Author: Alan Garny Date: Mon Oct 21 14:45:33 2019 +1300 Some minor cleaning up. commit 0e76cdd6422c07e91f87a1400992014335b06acb Author: Alan Garny Date: Mon Oct 21 14:42:36 2019 +1300 Some minor cleaning up. commit 53165d61725a55ab40fbdc91eb1ea531085ac579 Author: Alan Garny Date: Mon Oct 21 14:37:55 2019 +1300 Some minor cleaning up. commit 3286db2abd3071653fc6d000ee4c4f9e60ab493d Author: Alan Garny Date: Mon Oct 21 14:37:27 2019 +1300 Some minor cleaning up. commit 6d39d2bab3e9f8c153bbb87ba80bc6582715d7f0 Author: Alan Garny Date: Mon Oct 21 14:30:41 2019 +1300 Some minor cleaning up. commit 20b382571b548de62e47b8a45b7602d3a9457354 Author: Alan Garny Date: Mon Oct 21 14:13:05 2019 +1300 Some minor cleaning up. commit 917a68d5d6853fc03294d310d64d097674e86be5 Author: Alan Garny Date: Mon Oct 21 13:52:34 2019 +1300 Some minor cleaning up. commit e4ba90f46bdcf05b86e585f70a71c808cc2bf4e4 Author: Alan Garny Date: Mon Oct 21 13:41:44 2019 +1300 Some minor cleaning up. commit cce1876bf62ecb986e24031619a431800e30d7d1 Author: Alan Garny Date: Mon Oct 21 12:35:03 2019 +1300 Some minor cleaning up. commit a8ab7744598b831caa0b23649b30ba1f50294b74 Author: Alan Garny Date: Mon Oct 21 11:46:55 2019 +1300 Some minor cleaning up. commit 8d978ea30ed2be9b18ace1feda98de89029c2d5d Merge: 717536f09 1e2c2520a Author: Alan Garny Date: Mon Oct 21 11:29:45 2019 +1300 Merge branch 'master' into issue1255. commit f68b136ccacffb9ca2f63f0ce93384f30d9d0bc1 Merge: b9bbd6d7f 1e2c2520a Author: Alan Garny Date: Mon Oct 21 11:28:57 2019 +1300 Some minor cleaning up. commit 717536f09060b6a69f25b64a2aa23cca7db7761f Author: Alan Garny Date: Mon Oct 21 11:26:30 2019 +1300 Python: renamed `datastorenumpy.h` to `datastorepythonnumpy.h`. commit 1e2c2520a280317ec2fe49866272310b49e57964 Author: Alan Garny Date: Mon Oct 21 11:05:30 2019 +1300 Some minor cleaning up. commit 65f4ecab60d5fa14f650f8a00d614c7280e35be8 Author: Alan Garny Date: Mon Oct 21 10:53:15 2019 +1300 Python Console window: we don't want a border. Also, we don't need a top border on macOS. commit 6bc0c190279940699e6c5016c0a61a0cedc9dfab Author: Alan Garny Date: Mon Oct 21 10:45:19 2019 +1300 Some minor cleaning up. commit 50bbcb06b9d5897f5d29857f194bddc31fecac1c Author: Alan Garny Date: Mon Oct 21 10:36:26 2019 +1300 Some minor cleaning up. commit 31531a5d407b7a4c9714bf5c81f971198dc7788a Author: Alan Garny Date: Mon Oct 21 10:18:01 2019 +1300 Python: Python: our Python support should only concern our Python interface (and not also our Solver interface). commit e9b2ef9dbe9198188fb7153d6326c86804d0f477 Author: Alan Garny Date: Mon Oct 21 10:08:17 2019 +1300 Some minor cleaning up. commit a4a60a9230ce17c31c9e64a7450569513c7b2a1f Author: Alan Garny Date: Mon Oct 21 09:16:41 2019 +1300 Python: make sure that our `Web Browser` window plugin gets loaded after our `Python Console` one. commit d8e37e51c31099bda39afb855faba30fe951e2f0 Author: Alan Garny Date: Fri Oct 18 19:56:22 2019 +1300 PythonQt package: new binaries for version 3.2.2 (#1255). commit c189c42f96bd6b817267ee591e4e1aa4b3fd7449 Author: Alan Garny Date: Fri Oct 18 19:43:19 2019 +1300 Revert "Build our PythonQt package." This reverts commit f825e33860450fefaf83f8af1661db0b8e2e2257. commit 598f250b9b407aa2e9d199a23a17e697d9596637 Author: Alan Garny Date: Fri Oct 18 16:32:16 2019 +1300 PythonQt package: use the correct release and Git tag values. commit 0c5f9e6c96292155cb6099028632840e696a73ca Author: Alan Garny Date: Fri Oct 18 16:31:53 2019 +1300 Some minor cleaning up. commit f825e33860450fefaf83f8af1661db0b8e2e2257 Author: Alan Garny Date: Fri Oct 18 16:27:55 2019 +1300 Build our PythonQt package. commit a2a927cc5178d6549d0fa0aa466c3025f49dd2bd Author: Alan Garny Date: Fri Oct 18 16:27:16 2019 +1300 Some minor cleaning up. commit e2f5a0c30402c9994bdfcb8dcf75ea57f74087c2 Author: Alan Garny Date: Fri Oct 18 16:09:59 2019 +1300 PythonQt package: removed its README.rst file. This should, instead, be part of the developer documentation. commit 7471614573fd6681c789f79cdfd8b546b93c578c Author: Alan Garny Date: Fri Oct 18 16:08:47 2019 +1300 Python: renamed our PythonQtAPI plugin to PythonQt. commit 94569add63e836f06d57c0ca3902c68d0cadc62d Author: Alan Garny Date: Fri Oct 18 15:48:26 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 (#1255). commit 98cb111d5a33450961c3a6d54ad5c45baf312c10 Author: Alan Garny Date: Fri Oct 18 15:19:22 2019 +1300 Some minor cleaning up. commit de7b45f3328100a7b1272ad4634acf0b3bed4092 Author: Alan Garny Date: Fri Oct 18 14:56:23 2019 +1300 Some minor cleaning up. commit 8c395dd1d048443a857afa069b07a82c72f0ae4a Author: Alan Garny Date: Fri Oct 18 14:40:40 2019 +1300 Some minor cleaning up. commit 22db05f8df78a8c0d5bb04ac74390f7567f2f973 Author: Alan Garny Date: Fri Oct 18 12:29:31 2019 +1300 PythonPackages package: new binaries for Python 3.7.4 (#1255). commit 921d40ea7d179427ae25f6d1c7ad1ec7493af095 Author: Alan Garny Date: Fri Oct 18 12:22:51 2019 +1300 Python package: new binaries for version 3.7.4 (#1255). commit dbad2915f9a6e187bf96ef5f418bba868566224f Author: Alan Garny Date: Fri Oct 18 11:46:03 2019 +1300 Revert "Only build our PythonPackages package." This reverts commit c9b7d62e1346b48729ced8c253494e3610a5a7b3. commit 4e14fe4aa30a32188cb05a845349a9a75f4e4ad2 Author: Alan Garny Date: Fri Oct 18 11:44:29 2019 +1300 PythonPackages package: use the correct release tag. commit c9b7d62e1346b48729ced8c253494e3610a5a7b3 Author: Alan Garny Date: Fri Oct 18 11:43:41 2019 +1300 Only build our PythonPackages package. commit e660870d9d3a413a09cb67d984f65b954bfa17fe Merge: 69ff4f0a3 b9bbd6d7f Author: Alan Garny Date: Fri Oct 18 11:31:00 2019 +1300 Merge branch 'master' into issue1255. commit b9bbd6d7fe4c4ede81fe4a708c25bbe297250a61 Merge: fc03a459f cf171f179 Author: Alan Garny Date: Fri Oct 18 11:28:52 2019 +1300 Some minor cleaning up. commit cf171f179d2aee3f73d737200d1bf7541304bd32 Author: Alan Garny Date: Fri Oct 18 11:07:23 2019 +1300 Some minor cleaning up. commit 69ff4f0a3bb81735acce51f00b9fe3181ceadcbe Author: Alan Garny Date: Fri Oct 18 11:03:26 2019 +1300 Some minor cleaning up. commit 4f4247e2b32577d5a8eb351e183472311edd2c95 Author: Alan Garny Date: Fri Oct 18 10:50:17 2019 +1300 Some minor cleaning up. commit 9638ea7acf5ae67fe322a76a5896ffe549006585 Author: Alan Garny Date: Fri Oct 18 10:23:38 2019 +1300 Python package: new binaries for version 3.7.4 (#1255). commit 8135848872afdf4b145174c4b7e0d8d5a3bc986c Author: Alan Garny Date: Fri Oct 18 10:23:19 2019 +1300 Revert "Only build the Python package." This reverts commit 3618921194209a62fb8f32144d2d0eaeffbe1c53. commit 21fa5b7221878501d49be898f1ac06ff002ff3db Author: Alan Garny Date: Fri Oct 18 10:12:59 2019 +1300 Python package: renamed the package name and use the correct release tag. commit 3618921194209a62fb8f32144d2d0eaeffbe1c53 Author: Alan Garny Date: Fri Oct 18 10:12:45 2019 +1300 Only build the Python package. commit 378de01bf8e518f50795b65f2bfe8d866864929b Author: Alan Garny Date: Fri Oct 18 09:17:52 2019 +1300 Some minor cleaning up. commit 615beb68328205fe748d6067ea99f7418bf6b5d4 Author: Alan Garny Date: Fri Oct 18 08:49:09 2019 +1300 Some minor cleaning up. commit 3a212b129834da1244cbf74063208576b77798b6 Author: Alan Garny Date: Fri Oct 18 08:45:17 2019 +1300 Some minor cleaning up. commit cb4401dd2b2f0dff38374cacecd111e92f6fa262 Author: Alan Garny Date: Thu Oct 17 18:57:28 2019 +1300 Some minor cleaning up. commit 6ab2594324213aec619afb939b8a853415c98fbb Author: Alan Garny Date: Thu Oct 17 18:55:52 2019 +1300 Some minor cleaning up. commit 16927b3dc619e829df9672e01657ca84e7973a66 Author: Alan Garny Date: Thu Oct 17 18:28:29 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin commit de7f698b7bc37749e1c4b0dcedcb01e87c536070 Author: Alan Garny Date: Thu Oct 17 18:25:20 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin commit f7fdd7b4ed4b1cfae7e98679dfa1382e45cf2070 Merge: 1f04c1787 fc03a459f Author: Alan Garny Date: Thu Oct 17 18:24:38 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin commit 1f04c1787f1d3ee7fabe8670e8a7c18acbd892aa Author: Alan Garny Date: Thu Oct 17 18:23:20 2019 +1300 Some minor cleaning up. commit fc03a459f5acf49cbdea6973112093fd4670b355 Merge: 18fb385a4 4245711d1 Author: Alan Garny Date: Thu Oct 17 18:22:14 2019 +1300 Some minor cleaning up. commit 4245711d128aa670a7399bcad1e79f4e63569b78 Author: Alan Garny Date: Thu Oct 17 17:34:10 2019 +1300 Some minor cleaning up. commit 0c72485d388ab830aca64eccee1f1138819d533a Author: Alan Garny Date: Thu Oct 17 17:34:01 2019 +1300 Some minor cleaning up. commit 48d3ba425ee03c809637c3db403d4ab9dba233eb Author: Alan Garny Date: Thu Oct 17 17:09:17 2019 +1300 Some minor cleaning up. commit 01ea1c26b2a88e3e40561d5def67dcc35801c66a Author: Alan Garny Date: Thu Oct 17 17:05:56 2019 +1300 Some minor cleaning up. commit 81b3061c6a7286d36f1309210578c97a2d6af272 Author: Alan Garny Date: Thu Oct 17 16:04:38 2019 +1300 Python: renamed our Shell scripts. commit 6c26a783ab2882d52e17ccd40a22986b44be4f6f Author: Alan Garny Date: Thu Oct 17 14:50:28 2019 +1300 Some minor cleaning up. commit ec385cd85a2fd55c5d6bb775d20191e8afdf2ed4 Author: Alan Garny Date: Thu Oct 17 14:41:41 2019 +1300 Python: have our `xxx.sh` Shell scripts deployed as `xxx` [ci skip]. commit 1b2e4c11402bbd7c2e868019aea33cae842fceb0 Author: Alan Garny Date: Thu Oct 17 14:18:14 2019 +1300 Some minor cleaning up. commit 1b99a5b877ec06ddf376e105f776481eb75e2505 Author: Alan Garny Date: Thu Oct 17 14:11:00 2019 +1300 Revert "Python: renamed some scripts [ci skip]." This reverts commit e6600abb259efc3ca5d4e02e0edffa6402f040e6. Indeed, on Linux, the filename for our OpenCOR application is `OpenCOR` and so is the one for our application script, so... that can't work, hence we revert and are instead going to rename files when installing them. commit e6600abb259efc3ca5d4e02e0edffa6402f040e6 Author: Alan Garny Date: Thu Oct 17 14:01:00 2019 +1300 Python: renamed some scripts [ci skip]. commit 5d4d08e415f3c1a14d1109ce81ae3af48019ca0d Author: Alan Garny Date: Thu Oct 17 12:31:08 2019 +1300 Python: renamed some scripts [ci skip]. commit 39aa4dccac475838fa9120d080a1b56e6e40bd7d Author: Alan Garny Date: Thu Oct 17 12:10:04 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. [ci skip] The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit aa29cc1d0a47b1629b4165d450dd7298c7315146 Author: Alan Garny Date: Wed Oct 16 18:40:23 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit 36355e65e92e60204f7c6adb82f31be569955c0b Author: Alan Garny Date: Wed Oct 16 18:34:20 2019 +1300 Python: make sure that all our Python-related scripts get copied to our build directory. The idea is to be able to test Python-related things without first having to package and "install" OpenCOR. commit 44031312e4d6fc14bb0b5049d7a409d079e4c5a4 Author: Alan Garny Date: Wed Oct 16 18:21:12 2019 +1300 Some minor cleaning up. commit e252918c0dd815258d0282fb0514be34ac01c4ab Merge: af7a7f0c6 18fb385a4 Author: Alan Garny Date: Wed Oct 16 18:02:11 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin. commit 18fb385a49b8d1b233f7cf127a8c0d2a5f119c2f Merge: 2a6aad96d 49f03f2b2 Author: Alan Garny Date: Wed Oct 16 18:00:01 2019 +1300 General: updated our different developer scripts. commit af7a7f0c649748b5895cf8d53899cd8949b276fb Author: Alan Garny Date: Wed Oct 16 17:59:26 2019 +1300 Python: make our `ipythonconsole.sh` files configurable. commit e641693126fb42b9b6fd6cd3dfb272a42869a90a Author: Alan Garny Date: Wed Oct 16 17:54:44 2019 +1300 Python: make `ipythonconsole.bat` configurable. commit 77b768969aa0eb5d8c50d94d3ba98fa37d8d61e4 Author: Alan Garny Date: Wed Oct 16 17:54:10 2019 +1300 Some minor cleaning up. commit 49f03f2b2ef506948b92206d0a9b40761b39a143 Author: Alan Garny Date: Wed Oct 16 17:38:01 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 6dfdeba94522a5f1c2db964c9fb8972c67572445 Author: Alan Garny Date: Wed Oct 16 17:14:30 2019 +1300 Python: some minor cleaning up. commit b960c79a99b88b3f7fe1783df01430b362cce018 Author: Alan Garny Date: Wed Oct 16 17:14:10 2019 +1300 Python: renamed some scripts. commit f17bcaaa770baa8bd63aad64961dce3036b04fda Author: Alan Garny Date: Wed Oct 16 17:13:41 2019 +1300 Some minor cleaning up. commit ad14917d0ebf803d9feb2a34a57e8916fd9fb652 Author: Alan Garny Date: Wed Oct 16 16:44:57 2019 +1300 Python: some minor cleaning up of our various Python-related scripts. commit 75726d8297cd39d4e4355e01ca0229c2c92fa7dc Author: Alan Garny Date: Wed Oct 16 16:26:04 2019 +1300 Some minor cleaning up. commit 405ad80c19e3fbd1f4f2d747e987050528f4d0a4 Author: Alan Garny Date: Wed Oct 16 16:19:51 2019 +1300 General: make sure that our deployed Windows scripts can be run from anywhere. ... and thus be consistent with what is now done for ou Linux and macOS scripts. commit 54ffac424164e37b87b9cb06d2e25931f1b038b1 Author: Alan Garny Date: Wed Oct 16 16:02:45 2019 +1300 Some minor cleaning up. commit 9acc9760e805132a5b46788c17b0f1f7731d8a72 Author: Alan Garny Date: Wed Oct 16 15:52:03 2019 +1300 Python: renamed some scripts. commit 1540de1fdf0ebd9a97227bbaf91afe0410b8fb6d Author: Alan Garny Date: Wed Oct 16 15:14:02 2019 +1300 Some minor cleaning up. commit 6f60993bdde226d7e8fa8a448f8e68a6c6a70c87 Author: Alan Garny Date: Wed Oct 16 15:08:48 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 47548d6a6119bdd637f825ecfcc761c5dd100f6f Author: Alan Garny Date: Wed Oct 16 15:03:51 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a87902b20ada99b885c58c22ceb86bc7d8ff4f42 Author: Alan Garny Date: Wed Oct 16 14:30:14 2019 +1300 General: updated our different developer Batch and VBScript files. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit a2304150395a79567d7a0a5a214b8d0c752fd65c Author: Alan Garny Date: Wed Oct 16 13:02:26 2019 +1300 General: updated our different developer Shell scripts. The idea is to be able to run them from anywhere while until now we could only run them from the OpenCOR directory. commit 56bcacee8eae75cb46d24cd95f84fc5816e8f43f Author: Alan Garny Date: Wed Oct 16 10:42:58 2019 +1300 Python: made our various distribution Shell scripts executable. commit 41e1407a6fbddba53f10a45442406f959f3fe450 Author: Alan Garny Date: Tue Oct 15 18:14:41 2019 +1300 Some minor cleaning up. commit 46671013d3590785f0332b6c419f31e57721ce62 Author: Alan Garny Date: Tue Oct 15 17:51:18 2019 +1300 Python: renamed our `PythonQtConsoleWindow` plugin to `PythonConsoleWindow`. commit 7884231fa8eca5f3ee4c214efc87691931791ef9 Author: Alan Garny Date: Tue Oct 15 17:34:22 2019 +1300 Some minor cleaning up. commit 580e47bf166703bacf25a8c80062c3dfd9416d28 Author: Alan Garny Date: Tue Oct 15 17:22:30 2019 +1300 Some minor cleaning up. commit 49b4d530e61bc9e522123c7af134eafcad856c29 Merge: 05ecada9d 2a6aad96d Author: Alan Garny Date: Tue Oct 15 16:18:46 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin commit 2a6aad96d075257980104c803bccd04973b305cb Merge: aeccb6986 601c7a574 Author: Alan Garny Date: Tue Oct 15 16:02:05 2019 +1300 Cleaning up. commit 601c7a57414ef371ac2bbc43ed6f761c160d9ae1 Author: Alan Garny Date: Tue Oct 15 14:56:23 2019 +1300 Some minor cleaning up. commit 05ecada9d85a26a1180dd7f06b8ae088a4f3e9d6 Author: Alan Garny Date: Tue Oct 15 14:55:35 2019 +1300 Some minor cleaning up. commit e4f36376e75ae197d1c0150a15751d67e48697ee Author: Alan Garny Date: Tue Oct 15 14:48:29 2019 +1300 CMake: improved the way we build our plugins and packages. commit d726acd37a7a3a5079781afa39f7d93ea946383f Author: Alan Garny Date: Tue Oct 15 14:34:01 2019 +1300 Some minor cleaning up. commit 7bcaf499788eaa222aa3fd01907f9fd3ced564bf Author: Alan Garny Date: Tue Oct 15 14:16:19 2019 +1300 CMake: renamed `PYTHON_VERSION` to `PYTHON_SUPPORT` and `GUI_VERSION` to `GUI_SUPPORT`. More meaningful this way, not to mention that `PYTHON_VERSION` is used elsewhere in our CMake code! commit ab8a8f8ecb7d0a5b370dbd076b8b13d20343aaa7 Author: Alan Garny Date: Tue Oct 15 13:55:35 2019 +1300 Some minor cleaning up. commit cc29b06fbc40d05162114dc6592ce4919525274a Author: Alan Garny Date: Tue Oct 15 13:54:28 2019 +1300 CMake: improved the way we build our plugins and packages. commit 20269f819b5ae32d6b41909c98681c68b906ce24 Author: Alan Garny Date: Tue Oct 15 13:35:16 2019 +1300 Some minor cleaning up. commit 958f9f570e5bb43bb80eb17bc27e503e3bc23b57 Author: Alan Garny Date: Tue Oct 15 13:26:27 2019 +1300 Some minor cleaning up. commit e68fee89d14661cbdc94d1f56b485933e068c7fa Author: Alan Garny Date: Tue Oct 15 13:10:50 2019 +1300 Some minor cleaning up. commit b36236520bb1ef612bca0d0d6efc206bed175259 Author: Alan Garny Date: Tue Oct 15 09:48:16 2019 +1300 Python: temporarily rely the `win-debug` branch of `dbrnz/python-cmake-buildsystem`. See https://github.com/opencor/opencor/pull/2160#issuecomment-541552006 for the rationale behind it. commit 8238e3220acb3da04c4ef238fb5491c82da8ee87 Author: Alan Garny Date: Mon Oct 14 18:34:25 2019 +1300 Python: some minor cleaning up. I am assuming that `set(GIT_TAG "win-debug")` was a leftover of @dbrnz working on Windows+Debug version of Python. commit c7b5c81e88f8456de8c6c829622201ba912c4c06 Author: Alan Garny Date: Mon Oct 14 18:15:51 2019 +1300 Python: replaced our CMake `EXCLUDE_PYTHON` definition with `PYTHON_VERSION`. To be consistent with our use of `CLI_VERSION`, which we have incidently renamed to `GUI_VERSION`. commit 17ae87bffe0d769b71c098a466664eb2c3e77d77 Author: Alan Garny Date: Mon Oct 14 17:34:35 2019 +1300 Python: replaced our CMake `EXCLUDE_PYTHON` definition with `PYTHON_VERSION`. To be consistent with our use of `CLI_VERSION`, which we have incidently renamed to `GUI_VERSION`. commit 79f3f2f1147c2158819ab3905d1557169e8ae793 Author: Alan Garny Date: Mon Oct 14 17:03:25 2019 +1300 Python: some minor cleaning up with the use of our Python interface file. commit 63348d94bcdc27e2c2dccfe5eeb86161996b07d5 Author: Alan Garny Date: Mon Oct 14 16:56:41 2019 +1300 Python: renamed `Python Qt` to `PythonQt`. This is how it is called...! commit 20fa0e808e7e310b896575427583076fe23bbb1d Author: Alan Garny Date: Mon Oct 14 16:45:30 2019 +1300 Python: we don't need QtQuickWidgets. commit 9c8f2c25a6f300313a0735e89573c6611c55724d Author: Alan Garny Date: Mon Oct 14 15:58:20 2019 +1300 Python: deleted `src/plugins/thirdParty/Python/cmake/FindSQLite3.cmake`. Indeed, a similar file is now part of CMake (as of version 3.14, which is the minimum version of CMake that we need to build OpenCOR). commit 2ad119399e4a6ee6f3c2d23ec955d4ac2ca2709f Author: Alan Garny Date: Mon Oct 14 14:56:26 2019 +1300 Python: renamed a couple of plugins. - `src/plugins/miscellaneous/Python` to `src/plugins/miscellaneous/PythonShell`; and - `src/plugins/thirdParty/PythonLibrary` to `src/plugins/thirdParty/Python`. commit 4b06c46ffd2cd2e7f538a516d375b7227cdd3430 Author: Alan Garny Date: Mon Oct 14 12:26:11 2019 +1300 Revert "Some minor cleaning up." This reverts commit 4f53bd09eca4bc726013990d16086bb72949b97f. Oops, we indeed need to do this before copying the file over! commit 607f2282aa5b0ba5665a2ff4fa611bac7aaf1741 Author: Alan Garny Date: Mon Oct 14 12:24:15 2019 +1300 Python: renamed a couple of plugins. - `src/plugins/miscellaneous/Python` to `src/plugins/miscellaneous/PythonShell`; and - `src/plugins/thirdParty/PythonLibrary` to `src/plugins/thirdParty/Python`. commit 224b0b1b6f1385257e99c56cb4340ac1434d7249 Author: Alan Garny Date: Mon Oct 14 11:29:58 2019 +1300 Python: renamed `USE_PREBUILT_PYTHON_LIBRARY_PACKAGE` to `USE_PREBUILT_PYTHON_PACKAGE`. commit c87b9f84db5aaf2ac1ff748fd2df02e04beec582 Author: Alan Garny Date: Mon Oct 14 11:22:58 2019 +1300 Python: use the Python CMake build system available under the OpenCOR organisation. commit 4f53bd09eca4bc726013990d16086bb72949b97f Author: Alan Garny Date: Mon Oct 14 10:11:42 2019 +1300 Some minor cleaning up. commit 8be9b60ba2874fe06269d7369a9a0755105670f6 Merge: 8860cec95 aeccb6986 Author: Alan Garny Date: Fri Oct 11 20:37:51 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin. commit aeccb6986e4fe93fba978455c3a3d75adc9ecc6f Merge: 9507a3c3d ca3514eb9 Author: Alan Garny Date: Fri Oct 11 20:23:08 2019 +1300 SED-ML: some refactoring. commit ca3514eb98c44e532219d528d66f9279fafdaeb9 Author: Alan Garny Date: Fri Oct 11 19:47:17 2019 +1300 SED-ML: some refactoring. This is in preparation for our support for SED-ML L1V4. commit 8860cec95c7da74fcaf79eb312e495994348a84f Merge: 7b90c94c6 9507a3c3d Author: David Brooks Date: Fri Oct 11 13:20:32 2019 +1300 Merge branch 'master' into pythonplugin commit 9507a3c3d9d85ec346ad9c5bdc2bbb45683be54c Merge: c4ab91891 ba1c60a01 Author: Alan Garny Date: Fri Oct 11 12:41:25 2019 +1300 Simulation Experiment view: make sure that all of a solver's properties get saved to a SED-ML file (closes #2185). commit 7b90c94c678f9426245eff4feb809345a64bdf89 Author: David Brooks Date: Fri Oct 11 12:36:54 2019 +1300 Python: new `PythonLibrary` packages for Windows. commit ba1c60a01e0e3f42e856dfbb97d6ba28d840bf23 Author: Alan Garny Date: Fri Oct 11 12:10:27 2019 +1300 Slight update to our downloads and what is new pages. commit cb29d9d07c9676cef3eb45988cdce78c190fe0bf Author: David Brooks Date: Fri Oct 11 12:09:20 2019 +1300 Python: get backslash escaping right when checking script shebang line under Windows. commit 3f7301b50e9f7d3f0a47117bcad394c768843604 Author: Alan Garny Date: Fri Oct 11 12:06:16 2019 +1300 Simulation Experiment view: make sure that all of a solver's properties get saved to a SED-ML file (#2185). commit b65471f5eb1f3bf380f1ca74048e3618477d98f2 Author: Alan Garny Date: Fri Oct 11 09:35:16 2019 +1300 Some minor cleaning up. commit 9c609992613c09e8c0bc84a68378d6918c901c94 Author: David Brooks Date: Thu Oct 10 20:14:37 2019 +1300 Python: update pre-built `PythonLibrary` packages for Windows. commit 4aba66b9228a545e5e472fe92a4373250deec1e2 Author: David Brooks Date: Thu Oct 10 09:25:46 2019 +1300 Python: update pre-built `PythonLibrary` packages for macOS and Linux. commit c4ab91891517d6985386acb744fe745907ae3d9e Merge: 6b94e8263 23211b5bf Author: Alan Garny Date: Thu Oct 10 13:25:43 2019 +1300 Some minor cleaning up. commit 23211b5bf842f4faacc7ce16091b5c03e6950f64 Author: Alan Garny Date: Thu Oct 10 11:58:27 2019 +1300 Some minor cleaning up. commit 6b94e826339a9e24503f6cf780f1d740c6315535 Merge: 3810d6ead 7dc34b1ff Author: Alan Garny Date: Wed Oct 9 16:37:22 2019 +1300 Cleaning up. commit 7dc34b1ff5c868cc63740af0a3abbe7c743f9338 Author: Alan Garny Date: Wed Oct 9 16:16:30 2019 +1300 Some minor cleaning up. commit 011e52c226b3ac76e949c55864e14c133b7cb081 Author: Alan Garny Date: Wed Oct 9 15:59:42 2019 +1300 Some minor cleaning up. commit 5e475178b90eef33f513bfebdf4a4b8437c1685a Author: Alan Garny Date: Wed Oct 9 15:15:10 2019 +1300 Some minor cleaning up. commit 5825b30919a1bbc2ea92ea6fcfe3a9a6bcda6117 Author: Alan Garny Date: Wed Oct 9 14:00:50 2019 +1300 Some minor cleaning up. commit a266955a3cc14354c8343796117482f0a64ea9e5 Author: Alan Garny Date: Wed Oct 9 13:04:47 2019 +1300 Some minor cleaning up. commit 2df57b0cfe1b4701a39e69ece4a4bf24f3d6f9e4 Author: Alan Garny Date: Wed Oct 9 14:59:11 2019 +1300 GraphPanel widget: improved our tracking/restoring of colours. Note that it only make sense to retrieve our original colours if we have some graphs and that it's the same number as the number of graph colours that were originally tracked. Indeed, say that that you have a SED-ML file that has a couple of curves including an invalid one (e.g. one of the variables doesn't exist) then it means that only graph colours will be tracked. Then, if we are to correct the SED-ML file outside of OpenCOR. To go back to OpenCOR will trigger us to reload the SED-ML file. If we do so then the number of graphs won't be the same as the number of graph colours, hence the test (not to mention that it prevents a crash because of the out-of-bound index!). commit f57e6d5b11567d5f176e00f8989125750a555a5c Author: David Brooks Date: Wed Oct 9 14:06:47 2019 +1300 Python: allow for `python3` and `python3.x` as name of executable when setting path to Python. commit 68fe128678fd5e4c6a7af3f4102ee1424a304a08 Author: David Brooks Date: Tue Oct 8 11:53:57 2019 +1300 Python: tidy up build dependency code, making sure that the path to Python is set in scripts *before* they are used. commit 802a12aeaa2471fa4863148d8b71b4f0fa77c938 Merge: a11a82c71 1f297b8bd Author: David Brooks Date: Tue Oct 8 10:22:42 2019 +1300 Merge branch 'pythonplugin' of github.com:dbrnz/opencor into pythonplugin commit a11a82c71d21ac5fe1a8df2f4890b681fd224253 Merge: 0f94a3ceb 3810d6ead Author: David Brooks Date: Tue Oct 8 10:22:06 2019 +1300 Merge branch 'master' into pythonplugin commit 3810d6eadd94cfb5d1d2e8b7b65f9821e2d5fde5 Merge: f44e9f38c e693ac24f Author: Alan Garny Date: Tue Oct 8 09:09:00 2019 +1300 Packaging: improved error reporting when `create_package_file` fails (closes #2175). commit 1f297b8bdfa03d320a61a7e974114e095c4e62fe Merge: 0f94a3ceb f44e9f38c Author: Alan Garny Date: Mon Oct 7 19:09:20 2019 +1300 Merge remote-tracking branch 'upstream/master' into pythonplugin. commit e693ac24ff08b1e7867a766014e8c7ef1315de0d Merge: 1dd62b24a f44e9f38c Author: Alan Garny Date: Mon Oct 7 19:08:19 2019 +1300 Merge branch 'master' into issue2175. commit f44e9f38ce9ad8b271afbac3babda2b549bb65bb Merge: f8774601f ac692d815 Author: Alan Garny Date: Mon Oct 7 19:06:47 2019 +1300 Mesa: upgraded to version 19.2.0 (closes #2180). commit ac692d81505d27a87e51f113bf011f5bb2a6e4cd Author: Alan Garny Date: Mon Oct 7 18:43:01 2019 +1300 Revert "Python: documentation builds require Python and its packages to be fully installed." This reverts commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1. commit 6cc039dd67f013fb628e7ce7afbf18520c6295e1 Author: Alan Garny Date: Mon Oct 7 18:39:24 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit 1bdbb856645a392d078cf8171fe6f019f8c5ae83 Author: Alan Garny Date: Mon Oct 7 18:31:11 2019 +1300 Slight update to our downloads page (#2180). commit bc7971565005d8ea5120065467dc9b5f9ee1fe33 Author: Alan Garny Date: Mon Oct 7 18:26:54 2019 +1300 Mesa: upgraded to version 19.2.0 (#2180). commit 0f94a3ceb0611107919cba0a723136b08891aae8 Merge: 2e11ac8d2 f8774601f Author: David Brooks Date: Mon Oct 7 10:48:07 2019 +1300 Merge branch 'master' into pythonplugin commit 2e11ac8d2c2ab034217d61331a508dd4bfaa4bbc Author: David Brooks Date: Fri Oct 4 20:56:32 2019 +1300 Python: documentation builds require Python and its packages to be fully installed. commit f8774601fd27d4b7fe17830533df51c0f8346c1a Merge: fd80a0b8f 44b10f41b Author: Alan Garny Date: Fri Oct 4 11:40:25 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file (closes #2176). commit 44b10f41bd461378e1e30cddd568927b1357bb4c Author: Alan Garny Date: Fri Oct 4 10:59:50 2019 +1300 Reverting part of commit 13a0ef1. Indeed, if everything works fine (with our copy of Sphinx) then we shouldn't have to clean our `ext/doc` folder. So, the fact that we are having some problems with our copy of Sphinx means that it must be related to our packaging of Python and its packages? commit 268e5efa98a9926bdece64a0008848589aef2925 Author: Alan Garny Date: Fri Oct 4 10:41:26 2019 +1300 Slight update to our downloads page (#2176). commit 60724119ea4f63c821492e59b129859cc82e032e Author: Alan Garny Date: Fri Oct 4 10:39:50 2019 +1300 Simulation Experiment view: make sure that curves are plotted with all of their original settings when reloading a SED-ML file (#2176). This issue was that we were tracking the original settings using a graph's address as a key. However, when reloading a SED-ML file, that address changes since a graph gets removed and then readded. commit 949cefef9c7da5e4279555cbd704fca703545975 Author: David Brooks Date: Thu Oct 3 15:06:33 2019 +1300 Python: update PythonPackages for Windows debug mode. commit dfb41c1342b0e711c2bb43407709036a574dccb0 Author: David Brooks Date: Thu Oct 3 15:03:28 2019 +1300 Python: don't try to package directories that don't exist in Windows debug mode. commit a1b50b902c5d2fb1f6b4e7aa24bae067388e1ea5 Author: David Brooks Date: Thu Oct 3 15:02:34 2019 +1300 Python: only install a minimal set of packages in Windows debug mode. commit c57c9b742ede60264f9fe32f3bc97e78040f0a7b Author: David Brooks Date: Thu Oct 3 15:00:02 2019 +1300 Python: build Windows debug mode package for Python Qt. commit 1dd62b24a2b0bf4cc6838f08e2364769a5dd8dce Author: Alan Garny Date: Thu Oct 3 14:47:22 2019 +1300 Packaging: improved error reporting when `create_package_file` fails (#2175). commit fd80a0b8f8c149d20fa60566252ed5d5ed28a935 Merge: 74163c086 5d0249760 Author: Alan Garny Date: Thu Oct 3 13:26:40 2019 +1300 SED-ML: added support for left and right triangle symbols (closes #2173). commit 5d0249760178b8ce15dcb7a99cd23ef781d3a8ba Author: Alan Garny Date: Thu Oct 3 12:54:37 2019 +1300 Slight updates to our downloads and what is new pages (#2173). commit 8be0875ade6c1a26038dabeeda1acfdcf64e66d8 Author: Alan Garny Date: Thu Oct 3 12:47:24 2019 +1300 SED-ML: added support left and right triangle symbols (#2173). commit 8126e51458205205cfed32b3122342531e2e39e0 Author: David Brooks Date: Wed Oct 2 16:07:30 2019 +1300 Python: work on debug build of Python under Windows. commit 74163c0865363fe4d1074bec631fadfe683c17cb Merge: c1e2f9897 13a0ef14b Author: Alan Garny Date: Wed Oct 2 09:54:26 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties (closes #2171). commit 13a0ef14b6d5f5586aee421a6f9cf774d12235b7 Author: Alan Garny Date: Wed Oct 2 09:35:54 2019 +1300 We shouldn't always build our documentation afresh. Indeed, if you run `./cleanall` and `./make` then OpenCOR will build fine. However, if you rerun `./make` straight after that, you will be told that `[OpenCOR]/ext/doc/user` (or `[OpenCOR]/ext/doc/developer`, depending on which one gets built first) doesn't appear to contain a CMakeLists.txt file. So, instead, we have to update our `./clean` script to always clean our `[OpenCOR]/ext/doc` folder. commit af6e68ddc222bc71df76162ed8d9b2b816b69343 Author: Alan Garny Date: Wed Oct 2 09:14:53 2019 +1300 Slight updates to our downloads and what is new pages (#2171). commit 3354ef343852ba4feb14a948e6e8dcf580068a3e Author: Alan Garny Date: Wed Oct 2 09:11:43 2019 +1300 Simulation Experiment view: properly handle the Graph Panel properties (#2171). commit 7a9f397a7f0ac4672d47898bffa10106aa708db7 Author: Alan Garny Date: Tue Oct 1 16:17:58 2019 +1300 Make Clang-Tidy happy. commit c1e2f989701f62599f30df55262825eb62993e3c Merge: d8057d800 53a979246 Author: Alan Garny Date: Tue Oct 1 10:27:11 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit 53a979246b7c4fbba85522a59104dc942b65e19f Author: Alan Garny Date: Tue Oct 1 10:07:29 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit d8057d8005bed46548c22f260353f5db5a8d24bb Merge: 7064c6213 becf72ade Author: Alan Garny Date: Mon Sep 30 18:13:55 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit becf72ade0c8ef0c979032e3938a8a42328783b8 Author: Alan Garny Date: Mon Sep 30 17:45:18 2019 +1300 Always build our documentation afresh. commit 22e6cc86dca0d2234ead1ba6f06b5281ec63aca0 Author: Alan Garny Date: Mon Sep 30 17:13:20 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit fe1b1409c938eefad7c79d15ef12854747037000 Author: Alan Garny Date: Mon Sep 30 17:08:27 2019 +1300 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). commit c85a857b3c833bba5a0febf8bfef425692115f0b Merge: c71d8e62a 39b5818d1 Author: David Brooks Date: Mon Sep 30 14:09:13 2019 +1300 Merge branch 'pythonplugin' of github.com:dbrnz/opencor into pythonplugin commit c71d8e62a2b0269a888c0e6083db9d1a7bd8818f Author: David Brooks Date: Mon Sep 30 14:04:22 2019 +1300 Python: don't write wide characters to standard output as each wide character is now `NUL` padded under Windows, presumably because Python initialisation correctly sets up Unicode output. commit e8470312a9f194553bf2b4deaaad5e3378e75e90 Merge: 80f459842 7064c6213 Author: David Brooks Date: Sun Sep 29 13:28:01 2019 +1300 Merge branch 'master' into pythonplugin commit 39b5818d1f0bebd50200152b4583a24788798500 Merge: 1cf2665c1 7064c6213 Author: Alan Garny Date: Sat Sep 28 16:20:33 2019 +1200 Merge remote-tracking branch 'upstream/master' into pythonplugin commit 1cf2665c1c47c7239e48058062faff4b3d45dcdc Author: Alan Garny Date: Sat Sep 28 16:17:00 2019 +1200 Some minor cleaning up. commit 7064c62130274d4bf2398dfae14943549138074e Merge: 0ef494a7f 06fec5909 Author: Alan Garny Date: Sat Sep 28 16:08:11 2019 +1200 Windows: prevent `clean[all].bat` from deleting `.gitignore` if it is not hidden (closes #2167). commit 06fec5909378e8fd0b6eaae35b0858b81bade57e Author: Alan Garny Date: Sat Sep 28 15:36:19 2019 +1200 Windows: prevent `clean[all].bat` from deleting `.gitignore` if it is not hidden (#2167). commit 80f459842654395a5612a989e51e33ed0ed60662 Author: David Brooks Date: Fri Sep 27 20:28:40 2019 +1200 Python: remove debugging code. commit 22ba2c2f129446cfb00d3261fca41033e5108a63 Author: David Brooks Date: Fri Sep 27 20:26:45 2019 +1200 Python: for Windows use PythonQt's pre-built debug mode plugin. commit 74993e6f08e54c2ca91e2666055a127b7d696da4 Merge: aacc4fbc9 0ef494a7f Author: David Brooks Date: Fri Sep 27 19:32:04 2019 +1200 Merge branch 'master' into pythonplugin commit 0ef494a7f4e0f493d6dbe5cea8b1c68589f57b02 Merge: c468fc010 330ad7aad Author: Alan Garny Date: Fri Sep 27 18:33:43 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (closes #2165). commit 330ad7aadce8fdeff724543c3f0431188ee78095 Author: Alan Garny Date: Fri Sep 27 14:51:24 2019 +1200 Some minor cleaning up. commit f7245a5b1e146aee28605277605515c18c645126 Author: Alan Garny Date: Fri Sep 27 14:50:05 2019 +1200 Some minor cleaning up. commit 870b1822c0034f135777b798ccbc7697800d6aa7 Author: Alan Garny Date: Fri Sep 27 14:37:41 2019 +1200 Qt 5.12.5: make sure that we we can build a debug version of OpenCOR on macOS (#2165). We are ignoring any previous version of Qt (because of that break between Qt 5.12.4 and Qt 5.12.5). commit aacc4fbc9ce85c007807213f500770d6fc6f58e7 Author: David Brooks Date: Fri Sep 27 14:27:14 2019 +1200 Python: revert to using the `official` documentation sources. commit ade7d61b5ab35aece442c45fe2b46d1206f3fd21 Author: David Brooks Date: Fri Sep 27 14:17:02 2019 +1200 Python: reinstate build of developer documentation that was excluded for debugging CI builds. commit cc6363e49c101b9e5d93809ecd47513a91d42fa0 Author: David Brooks Date: Fri Sep 27 14:11:44 2019 +1200 Python: only use the debug PythonQt library if we are building it, presumably for debugging. commit 5b72949fecad2d57e72ae8e62adc9565bd70ec10 Author: Alan Garny Date: Fri Sep 27 14:06:04 2019 +1200 Some minor cleaning up. commit 99db190d5aeef7e275a54a1f94075c32dfe5c2ff Author: David Brooks Date: Fri Sep 27 12:57:10 2019 +1200 Python: actually build the `SAMPLE` and `TEST` plugins. commit fb37f1dcaae9f849b9f82a660039cfc3c9d551e6 Author: David Brooks Date: Thu Sep 26 19:39:59 2019 +1200 Python: update CLI tests for Python plugins. commit 6b006fac18d81e4cbf8828474f2ed586eb3c376f Author: David Brooks Date: Thu Sep 26 19:38:08 2019 +1200 Python: use a better name for Python shell plugin. commit 646b7dd6bf565b26d2ea1bd64e7c1156ce86375c Merge: cdefe735b c468fc010 Author: David Brooks Date: Thu Sep 26 15:45:54 2019 +1200 Merge branch 'master' into pythonplugin commit c468fc0101e3c99a73166cf6781dc3136dc77e84 Merge: fdea64b1e 6cbf0687b Author: Alan Garny Date: Thu Sep 26 15:23:01 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (closes #2161). commit 6cbf0687baa85cad24b95434d69848e5bf33f8d7 Author: Alan Garny Date: Thu Sep 26 15:05:19 2019 +1200 LLVM+Clang: make sure that we can use it on Windows (#2161). commit ea4a8f695ae5073d1ab92e3740db29a50f040dcc Author: Alan Garny Date: Thu Sep 26 14:44:19 2019 +1200 Core: renamed the `DummyMessageHandler` class in our MathML tests. Indeed, there used to be two `DummyMessageHandler` classes. One in our MathML tests and one in our Core CLI utilities, and the compiler now (!?) complains about it on macOS. commit cdefe735b2f866b3fa9af2a30eace17de9e550ed Author: David Brooks Date: Thu Sep 26 13:09:05 2019 +1200 Python: more debugging. commit dee20376988be3e0bf81255b184b161de974bf7c Author: Alan Garny Date: Thu Sep 26 11:35:11 2019 +1200 Slight update to our downloads page (#2161). commit 3b7abbcdab99066111551003f372d911ddd117b8 Author: Alan Garny Date: Thu Sep 26 11:30:54 2019 +1200 Revert "Only build LLVM+Clang." This reverts commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab. commit 1ed0f60fa0503f57374c0f821897231f21b84f5e Author: Alan Garny Date: Thu Sep 26 11:30:48 2019 +1200 LLVM+Clang: binaries for version 9.0.0 (#2161). commit 268c6d0bf3acbe26752fd66785e1242804eb0509 Author: David Brooks Date: Thu Sep 26 10:16:16 2019 +1200 Use our documentation fork for testing... commit 378ab3e097cc9cd9dc8627cf7f50e1ac58b520d0 Author: David Brooks Date: Thu Sep 26 10:15:28 2019 +1200 Python: only build documentation if we have a pre-built Python. commit 5db59d52b70787c4212927ae873744e902dda105 Author: Alan Garny Date: Thu Sep 26 07:29:48 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit abea9a9ac86b17b847510002f45773e4158912d0 Author: Alan Garny Date: Thu Sep 26 07:01:10 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 3f8c0ef65cdbe4adde3c057ea01f6ab68348edb8 Author: Alan Garny Date: Thu Sep 26 06:37:05 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 39b90145d356e468efd8801e1df259b1ba590723 Author: Alan Garny Date: Wed Sep 25 21:13:01 2019 +1200 LLVM+Clang: ignore a warning on Windows (#2161). commit be74c897400994e37363e388beee2835f9a46321 Author: David Brooks Date: Wed Sep 25 15:06:18 2019 +1200 Python: try removing quotes when defining environment for `SPHINX_EXECUTABLE`. commit 3d6c26850c646491ce47c3c3698e12d490ecd65a Author: Alan Garny Date: Wed Sep 25 09:39:21 2019 +1200 Revert "LLVM+Clang: upgraded to version 9.0.0 (#2161)." This reverts commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3. commit 693bca640fff0e1de8bd98cd42f3a4dd9f0a4aa3 Author: Alan Garny Date: Wed Sep 25 09:34:38 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit f3a911e0264079a09e32d44c442346ce819fdac9 Author: Alan Garny Date: Wed Sep 25 08:34:08 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 64762d9f09adda276e0c5a07048f3466f73ff99b Author: Alan Garny Date: Tue Sep 24 14:44:40 2019 +1200 LLVM+Clang: upgraded to version 9.0.0 (#2161). commit 39adeb880ba603fc7ef36892347a0ab6cd92ffab Author: Alan Garny Date: Tue Sep 24 14:44:20 2019 +1200 Only build LLVM+Clang. commit fdea64b1ef2ba058df6c1e3be0bcf7ffb9aa28df Merge: cdf4c5b98 186aefefb Author: Alan Garny Date: Tue Sep 24 11:30:06 2019 +1200 Batch files / shell scripts: make sure that a directory exits before changing to it (closes #2159). commit 186aefefba369a71ee2a540e204ce64aa5b98e44 Author: Alan Garny Date: Mon Sep 23 19:19:00 2019 +1200 Shell scripts: make sure that a directory exits before changing to it. commit f124e79eb9d53fe9c15d35a5670f59747d96d9aa Author: Alan Garny Date: Mon Sep 23 19:18:30 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 0c278625020d89caa96ae270b957a706c61b639d Author: Alan Garny Date: Mon Sep 23 19:04:35 2019 +1200 Batch files: make sure that a directory exits before changing to it. commit 35b119b24670e6696764869b0a8533d35d823367 Author: Alan Garny Date: Mon Sep 23 19:00:08 2019 +1200 Some minor cleaning up. commit 7729dde8528a3f16d3a74d6fdfe9e0f574372de5 Author: David Brooks Date: Fri Sep 20 19:18:36 2019 +1200 Python: update Windows packages for release. commit 05d8d16b847bdaf5cd7fc96c379107d47666584c Author: David Brooks Date: Fri Sep 20 19:03:06 2019 +1200 Python: update notes for building PythonQt under Ubuntu. commit 2ea198d6825e3db53fed305b1194755ec2a7f761 Author: David Brooks Date: Fri Sep 20 18:49:22 2019 +1200 Python: we've renamed the plugin that runs Python code files, so update helper scripts. commit c88ab410626f806ffab7b003b8749bf48ffe2a89 Author: David Brooks Date: Fri Sep 20 18:14:10 2019 +1200 Python: update Linux packages for release. commit e4653679c922f04678eab11594c8f732471818af Author: David Brooks Date: Fri Sep 20 15:24:52 2019 +1200 Python: remove unused code. commit baeefa40657328d060fdc4a01ff43c4f0f0ee61c Author: David Brooks Date: Fri Sep 20 15:18:35 2019 +1200 Python: tidy up script and shell running. commit 45aaf14b6a08fca7d8e13203e28d0c5324608886 Author: David Brooks Date: Fri Sep 20 15:15:53 2019 +1200 Python: we don't need to use `ctkAbstractPythonManager`. This also improves PythonQt cleanup and prevents a segmentation fault. commit 0c90f0230402b5fad8d7901b783fbb6fd18f5ce1 Author: David Brooks Date: Fri Sep 20 12:54:50 2019 +1200 Python: update macOS packages for release. commit 429cbf1c163fc072a5dcf157ce1f0c9874024fe2 Author: David Brooks Date: Fri Sep 20 12:14:01 2019 +1200 Python: tweak help text. commit de5e2d5db05ffab6362db25daf6d992619482dc0 Author: David Brooks Date: Fri Sep 20 11:50:25 2019 +1200 Python: use better names for library and script runner plugins. Rename `Python` to `PythonLibrary` and `PythonRunScript` to `Python`. commit 6208bedb3011c7a0047eb2316172dff942157ca2 Merge: 1975c91bc cdf4c5b98 Author: David Brooks Date: Thu Sep 19 21:21:26 2019 +1200 Merge branch 'master' into pythonplugin commit 1975c91bcad2a37ad07b1eb05b9f4f6312266b7a Author: David Brooks Date: Thu Sep 19 21:19:04 2019 +1200 Python: updated pre-built packages for Windows. commit b98514aa8bf9d45076522bb04cabf1d51484d8e6 Author: David Brooks Date: Thu Sep 19 21:18:13 2019 +1200 Python: PythonQt library under Windows doesn't have version in its name. commit e56ac6be9e7d560f1c5b7b4e03430a6896d3e9c9 Author: David Brooks Date: Thu Sep 19 21:17:09 2019 +1200 Python: we in fact need to use `EXTERNAL_EXTERNAL_FILES_TARGET` when setting `PYTHON_DEPENDENCIES` to prevent circular references. commit f64a645a4cb42e7a8972e516c4ab2559776f8bea Author: David Brooks Date: Thu Sep 19 19:31:47 2019 +1200 Python: executable is still `python.exe` under Windows. commit 15e8200a98083653a2d6823b047ff75869c061fc Author: David Brooks Date: Thu Sep 19 19:26:39 2019 +1200 Python: we provide `zlib`, so turn off the `USE_BUILTIN_ZLIB` option (used by Windows' builds). commit 32997016cd3fae44155e4e071fb8f8bec9926617 Author: David Brooks Date: Thu Sep 19 19:08:28 2019 +1200 Python: fix bad code from copy-and-paste... commit ab6c69251d78abb0be2c5dda03131734ffd71b65 Author: David Brooks Date: Thu Sep 19 19:06:08 2019 +1200 Python: correctly set `PYTHON_DEPENDENCIES` list. commit 4df570d62c111e86ed47056ba4f3edb60f647f8a Author: David Brooks Date: Mon Sep 16 09:06:59 2019 +1200 Python: PythonQt is now on GitHub, so base our version on it. commit c1579c0390d1a964180723cef4f7d2d3b875ede6 Author: David Brooks Date: Fri Sep 13 18:43:47 2019 +1200 Python: minor tidy up. commit f9e5d69c60054364da55fe21b35d19fb22d1d8fa Author: David Brooks Date: Fri Sep 13 18:43:22 2019 +1200 Python: improve error reporting when we can't create a console widget. commit cc49c634574d6a2b12f35bf6546c94cf0d75fd90 Author: David Brooks Date: Fri Sep 13 18:41:05 2019 +1200 Python: update our bundled packages to their latest versions. commit 89d6c33a24e89f0bdef5352ef35790faa360b118 Author: David Brooks Date: Fri Sep 13 18:36:26 2019 +1200 Python: make sure the resulting library is writeable. commit 8fbabdaa2cbc67f478e46adea3c59c6d4964e8c9 Author: David Brooks Date: Fri Sep 13 18:35:36 2019 +1200 Python: upgrade to version 3.7.4. commit f6c18716d46d106ad1fe2a0d1b33f2b8e5966304 Author: David Brooks Date: Fri Sep 13 18:34:22 2019 +1200 Python: use `python3` as the Python executable. commit 55adfff090c66aadf30475ffbe6a5f65bf2153c2 Author: David Brooks Date: Fri Sep 13 18:32:56 2019 +1200 Python: tidy up `CMakeLists.txt`. commit 5321ed98584d76aaff0a1aa47eb03e8ec844e357 Author: David Brooks Date: Fri Sep 13 16:03:49 2019 +1200 Python: improve how we find SQLite 3 and update Windows version. commit 4bfdeabf5e87bb3623c82f8c1364cb8c9cd4eb2f Author: David Brooks Date: Fri Sep 13 15:32:30 2019 +1200 Python: use `python` as the command to either run a script or provide an interactive shell in the `PythonRunScript` plugin. commit 6ada9880168871a5280aab133a5cb71ca6e965ef Author: David Brooks Date: Fri Sep 13 15:30:28 2019 +1200 Python: the Python library plugin has to be built and installed **before** code that uses our Python interface. commit 43866aab8bd4bdb9edaa63bc2a2cd3bcdab32736 Author: David Brooks Date: Fri Sep 13 15:27:11 2019 +1200 Tidy up: remove redundant test. commit 1dbc57c74ae47267161b3d992e63529570b56342 Author: David Brooks Date: Fri Sep 13 13:15:47 2019 +1200 Python: We can't use `;` as a list separator with `ExternalProject_Add`. commit 4f378c619e29c6ddcb8469edccc2c8d8db4f3c65 Author: David Brooks Date: Fri Sep 13 11:59:45 2019 +1200 Python: initialise `sys.argv`. commit 33587b6c1f84b9bd5d071ee0660d2e8e341d851c Author: David Brooks Date: Fri Sep 13 11:57:44 2019 +1200 Python: use interface begin/end wrappers. commit 9e6106a85002f5199d6e04a308e507b1cf9c73c9 Author: David Brooks Date: Fri Sep 13 11:55:31 2019 +1200 Python: initialise simulation and data store class members. commit 260a353fa56036f6a71dcf41b84886d2b0edb047 Author: David Brooks Date: Fri Sep 13 11:53:32 2019 +1200 Python: `DataStoreVariables` has to be a class for automatic PythonQt wrapper. commit cdf4c5b98426d00b917054d851ffce4f60970fa5 Merge: cbeb33fb0 f55ff467b Author: Alan Garny Date: Thu Sep 12 11:10:11 2019 +1200 OpenSSL: upgraded to version 1.1.1d (closes #2157). commit f55ff467bf4142db4516274c87ff90684a868dd6 Author: Alan Garny Date: Thu Sep 12 10:49:31 2019 +1200 Slight update to our downloads page (#2157). commit 66860afcb8b1b54ce9d42c4caa338a1955be2ae9 Author: Alan Garny Date: Thu Sep 12 10:48:10 2019 +1200 Slight update to our what is new page. commit 7553e4d309561da9e12c9ba1c544ab3292ce443c Author: Alan Garny Date: Thu Sep 12 10:45:51 2019 +1200 OpenSSL: binaries for version 1.1.1d (#2157). commit a4614911fafb2792fb9f9bec3149b6b9c5c848f0 Author: Alan Garny Date: Thu Sep 12 10:36:23 2019 +1200 Revert "Only build OpenSSL." This reverts commit cf420ec40fee9d47f5d607421617e5fde95d9a92. commit 633c8c997c5d73b2602f9315098e87ddcf871d2b Author: Alan Garny Date: Thu Sep 12 10:18:34 2019 +1200 OpenSSL: upgraded to version 1.1.1d (#2157). commit cf420ec40fee9d47f5d607421617e5fde95d9a92 Author: Alan Garny Date: Thu Sep 12 10:13:35 2019 +1200 Only build OpenSSL. commit cbeb33fb08c5360a6fc140116b8274e8502d9f6c Merge: c6af1c3c7 c296e2a75 Author: Alan Garny Date: Mon Sep 9 17:23:58 2019 +1200 New snapshot. commit c296e2a7559ba4f758903d526887860cfc53144b Author: Alan Garny Date: Mon Sep 9 16:41:41 2019 +1200 New snapshot. commit c6af1c3c72d80e47b3bccff508f2b14e1949526b Merge: 425ef9e97 84ea7cfe6 Author: Alan Garny Date: Mon Sep 9 16:36:42 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog (closes #2154). commit 84ea7cfe626c380f8441fe07dbe3f6138e705af0 Author: Alan Garny Date: Mon Sep 9 16:17:01 2019 +1200 Slight update to our downloads page (#2154). commit e6a54b02f2f04f09c36456910f33b3a43bc801bf Author: Alan Garny Date: Mon Sep 9 16:16:49 2019 +1200 General: prevent OpenCOR from crashing when on Windows, maximised and trying to open a dialog (#2154). commit 425ef9e97a32a892630a6c9aca414a1df19401ce Merge: 3465c7499 c6214ec15 Author: Alan Garny Date: Tue Sep 3 11:20:00 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 (closes #2147). commit c6214ec1589f715a70621170d196cd8371b1edda Author: Alan Garny Date: Tue Sep 3 10:59:12 2019 +1200 Revert "Only build LLVM+Clang." This reverts commit 7dc102ac1f1882cd21649f72f5b701412b91f800. commit c1db926578efe3af51119c43fbddaaab8de4999a Author: Alan Garny Date: Tue Sep 3 10:57:13 2019 +1200 LLVM+Clang: binaries for version 8.0.1 (#2147). commit 40564a739964e6aba57f75ed6904a074ce1375f1 Author: Alan Garny Date: Tue Sep 3 09:26:37 2019 +1200 Slight update to our downloads page (#2147). commit 9199e2bd6abb6025e5e32c4abe86b4e2930703a5 Author: Alan Garny Date: Mon Sep 2 16:13:56 2019 +1200 LLVM+Clang: upgraded to version 8.0.1 (#2147). commit 7dc102ac1f1882cd21649f72f5b701412b91f800 Author: Alan Garny Date: Mon Sep 2 16:13:07 2019 +1200 Only build LLVM+Clang. commit 3465c74990df6d98079bb36f6676ed60a60ec628 Merge: 4fcf1e5ac 481175ffd Author: Alan Garny Date: Mon Sep 2 15:24:23 2019 +1200 libgit2: upgraded to version 0.28.3 (closes #2148). commit 481175ffd129bc9f2dacd4827c432b342502a315 Author: Alan Garny Date: Mon Sep 2 15:03:15 2019 +1200 Slight update to our previous snapshots page. commit e1825c513d14ea1d9a225f2353ac91ff904b45b2 Author: Alan Garny Date: Mon Sep 2 15:01:32 2019 +1200 Slight update to our downloads page (#2148). commit 384f24b7c700beac08d4c3fd3adf0b0be479e25e Merge: 9ea124627 4fcf1e5ac Author: Alan Garny Date: Mon Sep 2 15:00:13 2019 +1200 Merge branch 'master' into issue2148. commit 9ea124627bcd41a6bdce657c471df260e323a722 Author: Alan Garny Date: Mon Sep 2 14:57:35 2019 +1200 Revert "Only build libgit2." This reverts commit b49218831835512cca4315ff25a6a475fe10a6ff. commit 885eb8a458f97d74fe0743b4044f682775a1337d Author: Alan Garny Date: Mon Sep 2 14:56:55 2019 +1200 libgit2: binaries for version 0.28.3 (#2148). commit 86a20c9d284851a8afec721aef876b3564d44834 Author: Alan Garny Date: Mon Sep 2 14:48:56 2019 +1200 libgit2: upgraded to version 0.28.3 (#2148). commit b49218831835512cca4315ff25a6a475fe10a6ff Author: Alan Garny Date: Mon Sep 2 14:48:43 2019 +1200 Only build libgit2. commit 4fcf1e5ac820b524b85ffc476ac3e6f40487df01 Merge: e28de3dc9 c158c9de7 Author: Alan Garny Date: Mon Sep 2 14:38:55 2019 +1200 Mesa: upgraded to version 19.1.5 (closes #2149). commit c158c9de75390b79ac34f05a298346ab9d3ce15a Author: Alan Garny Date: Mon Sep 2 14:02:10 2019 +1200 Slight updates to our downloads pages (#2149). commit 1dbc5bc82b451854061a420a7fd7e4acb8edd2de Author: Alan Garny Date: Mon Sep 2 13:57:52 2019 +1200 Mesa: binary for version 19.1.5 (#2149). commit 1492ca57b176a1664463cc08c8a7ac4a8d10835a Author: Alan Garny Date: Mon Sep 2 13:57:22 2019 +1200 Revert "Only build the Mesa library." This reverts commit 45060622b2df46b35bffb11a46d7e22055ade35c. commit 45060622b2df46b35bffb11a46d7e22055ade35c Author: Alan Garny Date: Mon Sep 2 13:53:27 2019 +1200 Only build the Mesa library. commit 67e914c73188ed5c951422d5fc0d7b980859c567 Author: Alan Garny Date: Mon Sep 2 13:52:29 2019 +1200 Mesa: upgraded to version 19.1.5 (#2149). commit e4392b597b4a56cd3f3cb1d67aa49c757b3806df Author: David Brooks Date: Thu Aug 22 17:41:51 2019 +1200 Update pre-built PythonPackages plugin for Windows. commit 8cdf652d6e3ac9bea468c8037bdc4c3a42fc54e4 Author: David Brooks Date: Thu Aug 22 15:53:23 2019 +1200 Make sure we install into the plugin's `site-packages` directory. commit ea34e38a010a0e7b121f268634e34032ede1eceb Author: David Brooks Date: Thu Aug 22 15:52:37 2019 +1200 Use the top-level `ext` directory to build packages. commit 7afffe1745e971a51f3df33142894f2dcb570041 Author: David Brooks Date: Thu Aug 22 15:52:01 2019 +1200 Directly clean/make `site-packages` directory using CMake's `file` command (using the external command under Windows' doesn't always work). commit 1815f82b6f56a767d6c52ddd40be4a5e9ec7ff31 Author: David Brooks Date: Thu Aug 22 15:50:08 2019 +1200 Remove unused code. commit 8d9ac403af9e7f425aeeea133c206e6fb3491609 Author: David Brooks Date: Thu Aug 22 14:11:11 2019 +1200 Install `pip` only when building the Python packages plugin. This makes sure we are using our version patched for Windows (#dbrnz/opencor/issues/29). commit 12c84ef33d564e12de54bfd4c63b0a921733294e Author: David Brooks Date: Thu Aug 22 14:07:24 2019 +1200 We renamed our PythonQt repository so make sure this snapshot uses the old version. commit e33c830494750a94326e326146b8b5449512530c Author: David Brooks Date: Thu Dec 6 20:03:43 2018 +1300 Python: tidy up C++ code. commit ac9578ec5c7640b26caff85bcd4acda85fcac4e4 Merge: 1d5c28fe4 e28de3dc9 Author: David Brooks Date: Sat Jul 27 10:13:48 2019 -0700 Merge branch 'master' into pythonplugin commit e28de3dc95fec03318f0d0a1ef226eaf2fbf98c8 Merge: 2221ca317 0f4f2d6f6 Author: Alan Garny Date: Fri Jul 19 11:07:51 2019 +0200 New snapshot. commit 0f4f2d6f6400de091836e5fd23f2191f5b4e5d99 Author: Alan Garny Date: Fri Jul 19 10:43:16 2019 +0200 New snapshot. commit 2221ca317f8b66c28c8799b8bbb31ed1a78f0fa6 Merge: 0bef1c058 50c5427b3 Author: Alan Garny Date: Fri Jul 19 10:41:25 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables (closes #2139). commit 50c5427b3e2c78fe8efe063686a7d041ea580da2 Author: Alan Garny Date: Fri Jul 19 10:17:51 2019 +0200 Slight updates to our what is new and downloads pages (#2139). commit 8916b0dd3f8c272cbf79fd2b56c687db6accfed5 Author: Alan Garny Date: Fri Jul 19 10:14:38 2019 +0200 Simulation support: improved the accuracy of algebraic variables that depend on the value of some state variables (#2139). commit 0bef1c058d4051bbe7b51b70e3dc259290224be9 Merge: a446104ec 72d291c85 Author: Alan Garny Date: Fri Jul 19 07:30:58 2019 +0200 OpenSSL: upgraded to version 1.1.1 LTS (#1801). @dbrnz, as you can see, we were finally (!!) able to upgrade to OpenSSL 1.1.1. We had no choice since we were having TLS initialisation issues on Windows, probably due to Qt 5.12.4 now relying on OpenSSL 1.1.1 while we were using OpenSSL 1.0.2. Indeed, although we use our own copy of OpenSSL, I guess there are some aspects of Qt that we use that rely on whatever version of OpenSSL that Qt uses. Anyway, it all seems to be working fine now, i.e. no TLS initialisation error anymore. commit 72d291c85a2407ffaada71399406eafa9d6d3be3 Author: Alan Garny Date: Fri Jul 19 00:10:32 2019 +0200 Slight update to our downloads page (#1801). commit d025cdc3e31940d6f05003f6cb252876eaea05e9 Author: Alan Garny Date: Thu Jul 18 23:56:51 2019 +0200 Updated the libgit2 binaries now that we use OpenSSL 1.1.1c (#1801). commit 7e78e670743978e0382d902c762cd2b5971dcd21 Author: Alan Garny Date: Thu Jul 18 23:56:25 2019 +0200 OpenSSL: binaries for version 1.1.1c (#1801). commit ca18468ab1d2bc85cf5c95b439312d379597fb22 Author: Alan Garny Date: Thu Jul 18 23:40:34 2019 +0200 Revert "Build libgit2 and OpenSSL (#1801)." This reverts commit bf7714b007141829afb77abf186587a9f79e3f12. commit 01dafe26078145bcda128d0452436824d9424aa6 Merge: bf7714b00 a446104ec Author: Alan Garny Date: Thu Jul 18 23:02:50 2019 +0200 Merge branch 'master' into issue1801. commit a446104ecf131523b3ab13ea52c588b37c22e0d7 Merge: c06a366c2 a98905559 Author: Alan Garny Date: Thu Jul 18 23:02:07 2019 +0200 Make sure that we have a view before trying to import a file using OpenCOR's URI scheme (closes #2140). commit a989055598e6437997f2cd6ad0bc356a686defc4 Author: Alan Garny Date: Thu Jul 18 22:39:48 2019 +0200 Slight updates to our downloads pages (#2140). commit de37455882d74ec06eff63bd8a7d2e2efda6cbd5 Author: Alan Garny Date: Thu Jul 18 22:35:37 2019 +0200 Make sure that we have a view before trying to import a file (#2140). commit 7f84de2e2f23a19443d124364b87c7d9970f914a Author: Alan Garny Date: Thu Jul 18 22:34:10 2019 +0200 Some minor cleaning up. commit 81f99029837cbef7022c371e6b5669eec47ada06 Author: Alan Garny Date: Thu Jul 18 22:33:21 2019 +0200 Some minor cleaning up. commit 26250713e49c1c11ccee6640d54e65cd10cde5cb Author: Alan Garny Date: Thu Jul 18 22:33:13 2019 +0200 Some minor cleaning up. commit bf7714b007141829afb77abf186587a9f79e3f12 Author: Alan Garny Date: Thu Jul 18 15:43:58 2019 +0200 Build libgit2 and OpenSSL (#1801). commit 946b9bab7a18ab87070f072fbdd4e0d4feb88cf4 Author: Alan Garny Date: Thu Jul 18 15:39:07 2019 +0200 OpenSSL: upgraded to version 1.1.1c (#1801). commit 7d86a1c5b0cd0ab59d7923ded904588012cd56c8 Merge: 27ef2ecc6 c06a366c2 Author: Alan Garny Date: Fri Jun 28 11:15:01 2019 +1200 Merge branch 'master' into issue1801. commit 27ef2ecc6e2a954524b9a9f61bca1f531efb97e4 Author: Alan Garny Date: Fri Jun 28 11:13:43 2019 +1200 Merge branch 'master' into issue1801. commit c06a366c2f1e691233f4b027a57a0f11fa316b50 Merge: ef7a9d69e 9b9fc1e17 Author: Alan Garny Date: Thu Jun 27 19:09:22 2019 +1200 New snapshot. commit 9b9fc1e17ded8007d99ca7c5547b4e01a67b78a3 Author: Alan Garny Date: Thu Jun 27 18:32:36 2019 +1200 New snapshot. commit ef7a9d69e1549297371e183493c87f11d981c9f8 Merge: ebcba3b58 3d94e5501 Author: Alan Garny Date: Thu Jun 27 18:31:37 2019 +1200 QScintilla: upgraded to version 2.11.2 (closes #2131). commit 3d94e5501cac476955803cf6d3a8910496ffe774 Author: Alan Garny Date: Thu Jun 27 18:10:45 2019 +1200 Slight update to our downloads page (#2131). commit e3c32b328d11b91487edebc2912fc9d774d3425e Author: Alan Garny Date: Thu Jun 27 18:09:31 2019 +1200 Revert "Only build QScintilla (#2131)." This reverts commit 65918833cb4ed7fe16c18072c7601474bb39ff08. commit be31b1b45e56a922bdaa5902c59679a93cba3569 Author: Alan Garny Date: Thu Jun 27 18:08:35 2019 +1200 libgit2: binaries for version 2.11.2 (#2131). commit 622e5573a0bf05152c6ef31b1350c75b313039f6 Merge: 6d739dab4 ebcba3b58 Author: Alan Garny Date: Thu Jun 27 17:52:54 2019 +1200 Merge branch 'master' into issue2131. commit ebcba3b588cc2d694e02b7e07024ea192abda6cc Merge: 3d90d0908 d19a7d9ba Author: Alan Garny Date: Thu Jun 27 17:52:04 2019 +1200 libgit2: upgraded to version 0.28.2 (closes #2123). commit 6d739dab4bd7a44919619b2eefdf9649aa0c2295 Author: Alan Garny Date: Thu Jun 27 17:44:26 2019 +1200 QScintilla: upgraded to version 2.11.2 (#2131). commit 65918833cb4ed7fe16c18072c7601474bb39ff08 Author: Alan Garny Date: Thu Jun 27 17:43:14 2019 +1200 Only build QScintilla (#2131). commit d19a7d9baa04998631134186834bd1a0a2d65b22 Author: Alan Garny Date: Thu Jun 27 17:33:09 2019 +1200 Slight update to our downloads page (#2123). commit 67889b82994fee758d67de6dedb8930a1c80cb5f Author: Alan Garny Date: Thu Jun 27 17:31:48 2019 +1200 libgit2: binaries for version 0.28.2 (#2123). commit adb7e6b2602cc778ce6a1cb4527b2600ececb3e3 Author: Alan Garny Date: Thu Jun 27 17:28:43 2019 +1200 Revert "Only build libgit2 (#2123)." This reverts commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e. commit b4ac240e57ab2970d58a7de0d630a141c967989b Author: Alan Garny Date: Thu Jun 27 17:24:08 2019 +1200 libgit2: upgraded to version 0.28.2 (#2123). commit 41a93d5acb81c58cc2b102d88bf77febe1c71b3e Author: Alan Garny Date: Thu Jun 27 17:22:49 2019 +1200 Only build libgit2 (#2123). commit 3d90d09083440f519395d182c6d49326c9384c48 Merge: 377b532b8 321e1f2e6 Author: Alan Garny Date: Thu Jun 27 17:02:21 2019 +1200 Mesa: upgraded to version 19.1.1 (closes #2124). commit 321e1f2e6229be40887bd7e64715176626f074df Author: Alan Garny Date: Thu Jun 27 16:20:46 2019 +1200 Slight update to our downloads page (#2124). commit 318456cf84e857edc43f50af1907ae83cb5a4258 Author: Alan Garny Date: Thu Jun 27 16:18:35 2019 +1200 Revert "Only build Mesa (#2122)." This reverts commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec. commit 218b177d00efeb9630142754d7504e988739d7e8 Author: Alan Garny Date: Thu Jun 27 16:18:27 2019 +1200 Mesa: binaries for version 19.1.1 (#2124). commit 729eb8a70ab0e8eda6657586afcb8068ce2fa9ec Author: Alan Garny Date: Thu Jun 27 15:53:11 2019 +1200 Only build Mesa (#2122). commit d440a5e6de9651826d4b3d32b6d18a6bfffaa36b Author: Alan Garny Date: Thu Jun 27 15:52:54 2019 +1200 Mesa: ugpraded to version 19.1.1 (#2122). commit 377b532b81ea5ea83fa16c7c3e82565691c6c0b5 Merge: d617acde3 daa49a0a2 Author: Alan Garny Date: Thu Jun 27 15:44:40 2019 +1200 jQuery: upgraded to version 3.4.1 (closes #2122). commit daa49a0a2fef46219595f0bb66b7b7f10d38bc36 Author: Alan Garny Date: Thu Jun 27 15:19:44 2019 +1200 Slight update to our downloads page (#2122). commit 2a051661e052e45ae3280dec62655355bdcf85f4 Author: Alan Garny Date: Thu Jun 27 15:18:03 2019 +1200 jQuery: upgraded to version 3.4.1 (#2122). commit d617acde3b1a037ddf8004889674cead083b5f5a Merge: 12ab03f98 c62b3001d Author: Alan Garny Date: Thu Jun 27 14:24:40 2019 +1200 CMake: some minor cleaning up. commit c62b3001d9d9148a532a21d51b26f23b9eda499b Author: Alan Garny Date: Thu Jun 27 13:58:55 2019 +1200 CMake: some minor cleaning up. commit 2aa173facaceb38e9b48c54e3407d5f2b69fcd61 Author: Alan Garny Date: Thu Jun 27 12:54:19 2019 +1200 CMake: some minor cleaning up. commit cbe90a0051d8f7aca646114107c14a4d991cffa6 Author: Alan Garny Date: Thu Jun 27 12:45:49 2019 +1200 CMake: some minor cleaning up. commit 12ab03f9811251ac130e83fb2185c519fd01c39c Merge: a9143f522 0d36ea162 Author: Alan Garny Date: Thu Jun 27 11:29:11 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction (closes #2125). commit 0d36ea1626749b721ac5c8a14641e92628161999 Author: Alan Garny Date: Thu Jun 27 10:55:00 2019 +1200 Slight updates to our downloads and what is new pages (#2125). commit cdb83fcc687757e4bb8ce47891b169d428ee44b7 Author: Alan Garny Date: Thu Jun 27 10:47:52 2019 +1200 CellML Text view: can once again read a CellML file that has no XML processing instruction (#2125). commit a9143f5223401f9c17b4f164ddda1e8cd104e075 Merge: d66ab0482 aee8e4749 Author: Alan Garny Date: Thu Jun 27 09:00:38 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit aee8e474905e3772cdd89b2e4eae34e3ea170a44 Author: Alan Garny Date: Thu Jun 27 08:38:22 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (opencor#2126). commit d66ab04829c833aea5224cbc0dc1ba4cc8077952 Merge: f0c5da665 4cdfdf266 Author: Alan Garny Date: Thu Jun 27 08:33:12 2019 +1200 Clang-Tidy: include OpenCOR's header files (closes #2120). commit 4cdfdf2668cfe813bbac9f0a126226ee00a7864a Author: Alan Garny Date: Wed Jun 26 18:12:19 2019 +1200 Clang-Tidy: include OpenCOR's header files (#2120). commit 6c336f7c7457727e8783d3dcaec81fc79bb42ff6 Author: Alan Garny Date: Wed Jun 26 16:12:21 2019 +1200 Some minor cleaning up. commit 031cc22f62d7c5a297ca39f4b533a7a2bd40d208 Author: Alan Garny Date: Wed Jun 26 16:05:33 2019 +1200 Make Clang-Tidy happy (#2120). commit b8bc1002e3432c2a4af5015e8e171d503701534a Author: Alan Garny Date: Wed Jun 26 16:01:49 2019 +1200 Make Clang-Tidy happy (#2120). commit a2430860884e8b3b6012dc13011d80b54e4c749e Author: Alan Garny Date: Wed Jun 26 15:57:42 2019 +1200 Make Clang-Tidy happy (#2120). commit 25172b185d17f0ff89bca87cbd4a8d4abf06036c Author: Alan Garny Date: Wed Jun 26 15:56:09 2019 +1200 Make Clang-Tidy happy (#2120). commit c752c88e61f0786685a232ebae13ae6ffaa1d5e8 Author: Alan Garny Date: Wed Jun 26 15:50:51 2019 +1200 Make Clang-Tidy happy (#2120). commit 777f9f07dbeef6b7837f97848ed249f2992c5b36 Author: Alan Garny Date: Wed Jun 26 15:48:20 2019 +1200 Make Clang-Tidy happy (#2120). commit 6801c40ad1d823b78b6c9ffce7e79e01c4bfc6ef Author: Alan Garny Date: Wed Jun 26 15:46:11 2019 +1200 Make Clang-Tidy happy (#2120). commit 5e95feaf032051fe6596eb6b58d974c667bb7148 Author: Alan Garny Date: Wed Jun 26 15:39:58 2019 +1200 Make Clang-Tidy happy (#2120). commit 3fe092f28de2d7ef541269c7cb8b70b35882e902 Author: Alan Garny Date: Wed Jun 26 15:37:57 2019 +1200 Make Clang-Tidy happy (#2120). commit e30eda96ea835c1377993eed202a1fdaf4ef78f5 Author: Alan Garny Date: Wed Jun 26 15:31:55 2019 +1200 Make Clang-Tidy happy (#2120). commit efc77e8c11dfaa4562f5af6e4c1e63fd0acffd84 Author: Alan Garny Date: Wed Jun 26 15:28:55 2019 +1200 Some minor cleaning up. commit 16b9bf077b86cc8c7c3af64487e67dbed0bb8539 Author: Alan Garny Date: Wed Jun 26 15:28:46 2019 +1200 Make Clang-Tidy happy (#2120). commit 4f2895292f22cf7c936c279aadeba4c9974058bb Author: Alan Garny Date: Wed Jun 26 14:17:24 2019 +1200 Make Clang-Tidy happy (#2120). Reverting a few things... commit f4587e0d4897012d3957c718a02c5f42a50ed0d1 Author: Alan Garny Date: Wed Jun 26 12:05:22 2019 +1200 Make Clang-Tidy happy (#2120). commit bd2760583a17c6a8f006b372293a000fd6c0d48f Author: Alan Garny Date: Wed Jun 26 11:31:41 2019 +1200 Make Clang-Tidy happy (#2120). commit 5808ba3c0853bb02cc6176d0dcb35850e2f3d965 Author: Alan Garny Date: Wed Jun 26 11:23:59 2019 +1200 Make Clang-Tidy happy (#2120). commit d59678fc51f323e8f74facf5c27dead246e5fb67 Author: Alan Garny Date: Wed Jun 26 11:20:11 2019 +1200 Make Clang-Tidy happy (#2120). commit 3281bd429d11c844e9fb56c8e4bf7946287bf0f8 Author: Alan Garny Date: Wed Jun 26 11:14:55 2019 +1200 Make Clang-Tidy happy (#2120). commit 1d3e262d1f3a0c8241edea6ab64f45fede5d0dfb Author: Alan Garny Date: Wed Jun 26 11:13:35 2019 +1200 Make Clang-Tidy happy (#2120). commit ba129b35c3cd1631b4b14db03a5b4d983958731f Merge: ad36bfdc0 f0c5da665 Author: Alan Garny Date: Wed Jun 26 10:49:09 2019 +1200 Merge branch 'master' into issue2120. commit f0c5da66510334033c0e7bbdea027367f66be5e3 Merge: 4ddf28c53 8738c816a Author: Alan Garny Date: Wed Jun 26 10:46:06 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit 8738c816a14c74d8c269a4d0a29d17b1bc62261b Author: Alan Garny Date: Wed Jun 26 10:27:58 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit f517d3d7cd20a6cd11fe044c27333d39926786ab Author: Alan Garny Date: Wed Jun 26 09:55:05 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit cf7311d13d32482de4468bad2823ce8faefa819f Author: Alan Garny Date: Wed Jun 26 09:53:48 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Some minor cleaning up. commit ad36bfdc00e28986c6259535b6ca1ce4df23f1a7 Merge: ef1d2e088 4ddf28c53 Author: Alan Garny Date: Tue Jun 25 18:38:41 2019 +1200 Merge branch 'master' into issue2120. commit ef1d2e088ad04f1673dc03850f8e000af1ee2148 Author: Alan Garny Date: Tue Jun 25 18:36:18 2019 +1200 Merge branch 'master' into issue2120. commit 4ddf28c536897263f45275da4051559cc1f3d3c9 Merge: 5ceae0fe8 5c445b0e3 Author: Alan Garny Date: Tue Jun 25 18:25:35 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (closes #2126). commit 5c445b0e34d7673c4df927c242075950426b8639 Author: Alan Garny Date: Tue Jun 25 17:47:34 2019 +1200 Slight update to our downloads page (#2126). commit 2c459d658e2cf4ae514e46f24aadb1302459f666 Author: Alan Garny Date: Tue Jun 25 17:38:03 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit 6d589d5633fdb30111072021aee40515da47c183 Author: Alan Garny Date: Tue Jun 25 17:18:05 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit cbda8f16d6bc3143834d286d8d92f2e74e77cdf8 Author: Alan Garny Date: Tue Jun 25 16:41:59 2019 +1200 Prebuilt third-party libraries are now installed under [OpenCOR]/ext (#2126). Also simplified our build process and made it more robust. commit e1dc04e9c3ce3cfd4590ff047707acc46ba75faa Author: Alan Garny Date: Tue Jun 25 16:34:34 2019 +1200 Clang-Tidy: moved a couple of .clang-tidy files to a better location. commit 46cf0267e9ce940a23a4579cfd59fcef653b5357 Author: Alan Garny Date: Tue Jun 25 16:24:57 2019 +1200 Some minor cleaning up. commit 2b7624c7e74fd4c4794a5f73f8de656978f5614a Author: Alan Garny Date: Tue Jun 25 16:22:13 2019 +1200 Some minor cleaning up. commit ecc27a32898ca0ed4315c33b2d2fcf36101d139d Author: Alan Garny Date: Tue Jun 25 16:19:19 2019 +1200 Some minor cleaning up. commit e57b82a7a0f282f0d29e21eb402381850f995d4d Author: Alan Garny Date: Tue Jun 25 12:55:17 2019 +1200 Clang-Tidy: only show issues for our header files (#2120). commit 6392d82f53177ff5ab7cbcc2d25506c818ce0eb6 Author: Alan Garny Date: Tue Jun 25 10:37:25 2019 +1200 Clang-Tidy: only show issues for our header files (#2120). commit 3c4f384a082242296c7e5636d30d8bd88edb002b Author: Alan Garny Date: Tue Jun 25 09:55:38 2019 +1200 Make Clang-Tidy happy (#2120). commit 12526bb90a5e15f9f8cc176d9a6ecfcae516196e Author: Alan Garny Date: Tue Jun 25 09:49:48 2019 +1200 Make Clang-Tidy happy (#2120). commit 835369d7cddfdf560029477c74a148bf9e23e913 Author: Alan Garny Date: Tue Jun 25 09:43:26 2019 +1200 Make Clang-Tidy happy (#2120). commit 2789bbfc40c0d5fa904dc32e5ac99fa3494ba500 Author: Alan Garny Date: Tue Jun 25 09:40:49 2019 +1200 Make Clang-Tidy happy (#2120). commit f8b484a2a070aa53950a25f923b4966e1d87a3e1 Author: Alan Garny Date: Tue Jun 25 09:34:52 2019 +1200 Make Clang-Tidy happy (#2120). commit a65dfc285fe65ae59a5ca644bcef78b8a255a2df Author: Alan Garny Date: Tue Jun 25 09:25:41 2019 +1200 Make Clang-Tidy happy (#2120). commit ee4f7a52c451e5f28fcbf0eb34522b3547e9eb31 Author: Alan Garny Date: Tue Jun 25 09:22:44 2019 +1200 Make Clang-Tidy happy (#2120). commit fa338cea8f2c9c37fc8a0c6167278b4653a294a1 Author: Alan Garny Date: Tue Jun 25 09:15:59 2019 +1200 Make Clang-Tidy happy (#2120). commit 34043978f8ae5a06c005da9a5003966952cbffd2 Author: Alan Garny Date: Mon Jun 24 13:25:07 2019 +1200 Make Clang-Tidy happy (#2120). commit 18f56f2d8d5ab28270b83e4f3a05993bf14477c5 Author: Alan Garny Date: Mon Jun 24 12:52:22 2019 +1200 Make Clang-Tidy happy (#2120). commit 23da1da835e45ad419b75e2d66f82813f61c863c Author: Alan Garny Date: Mon Jun 24 12:28:46 2019 +1200 Make Clang-Tidy happy (#2120). commit 37e6447ff910c78a9326e42b14d3828f40ba766f Author: Alan Garny Date: Mon Jun 24 11:56:25 2019 +1200 Make Clang-Tidy happy (#2120). commit e9707afdf46afa5f16a91513ed54ac39b1609aca Author: Alan Garny Date: Mon Jun 24 11:52:54 2019 +1200 Make Clang-Tidy happy (#2120). commit 230fd914977a0398b33ea7daf38d743e31b5fee4 Author: Alan Garny Date: Mon Jun 24 11:48:52 2019 +1200 Clang-Tidy: we actually need a .clang-tidy file here and there (#2120). Indeed, to create a .clang-tidy file in our build folder, and to have src/3rdparty/QtSingleApplication/.clang-tidy and src/plugins/support/ZIPSupport/.clang-tidy is needed if we want to prevent those folders from being checked by Clang-Tidy. commit 2510f64419ebdf13605ae0befd5df621e19fb4e4 Author: Alan Garny Date: Mon Jun 24 11:45:02 2019 +1200 Make Clang-Tidy happy (#2120). commit e1f129135bbe2a4e7430712a6e78eca0826a70cc Author: Alan Garny Date: Mon Jun 24 10:48:22 2019 +1200 Clang-Tidy: do everything through CMake (#2120). Indeed, we can't use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders (e.g. build, ext). So, instead, we "hardcode" the path for the headers that we want to see analysed. commit cf99e5499933d8e79e830f542c129f7a2765da6f Author: Alan Garny Date: Mon Jun 24 09:40:02 2019 +1200 scripts/genericclean: don't need to remove build/.clang-tidy anymore (#2120). Since we don't create a .clang-tidy file anymore. commit 23f144582ab0d4010c6438c77a85339cb9b693d5 Author: Alan Garny Date: Mon Jun 24 09:39:03 2019 +1200 Clang-Tidy: do everything through CMake (#2120). Indeed, we can't use PCRE, just POSIX ERE, for HeaderFilterRegex in a .clang-tidy, which makes it impossible to exclude some folders (e.g. build, ext). So, instead, we "hardcode" the path for the headers that we want to see analysed. commit ecdc8d063a3526e4906f6f446ab11aad903a85b9 Author: Alan Garny Date: Mon Jun 24 09:36:30 2019 +1200 Slight update to our .gitignore file (#2120). Now that we put our external libraries: everything is now under [OpenCOR]/ext. commit f0c12ee851c7d9eb30abe78589c3863e2c3a7bf4 Author: Alan Garny Date: Sat Jun 22 11:44:55 2019 +1200 libSEDML: use the "official" libSBML and libNuML variables. commit 36f2d92b3a2d9870dfad0b2bb5ce9eb0ceaadba1 Author: Alan Garny Date: Sat Jun 22 11:44:38 2019 +1200 libNuML: use the "official" libSBML variables. commit 69363a39a276bfb8db2f695c982ac84aef32c8c6 Author: Alan Garny Date: Sat Jun 22 11:44:11 2019 +1200 libgit2: make sure that it depends on our OpenSSL and zlib packages. commit e68a713425e868e3cfdc10d1f4b7f8620ec71515 Author: Alan Garny Date: Sat Jun 22 11:43:41 2019 +1200 libSBML: make sure that it depends on our zlib package. commit 3938138ad10e2bfd78fbed62be7cd7cdd5c2671d Author: Alan Garny Date: Sat Jun 22 11:43:14 2019 +1200 Graph panels: we don't need libSEDML (!!). commit fd82f407db9d98edc43f4d492dfd512a8a99967f Author: Alan Garny Date: Sat Jun 22 11:42:49 2019 +1200 Minor reordering of plugins. commit 16fb7e4ec785eb319f4cb529c692e0bbe9458cf5 Author: Alan Garny Date: Fri Jun 21 20:05:04 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). commit 98adbdcca8ae07027a4d4430edef6b6e6a6c1dbf Author: Alan Garny Date: Fri Jun 21 19:26:35 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). commit 9d5f849ac91a40fc029b83be553604533cb6e9a3 Author: Alan Garny Date: Fri Jun 21 19:06:47 2019 +1200 Slight update to our genericclean scripts (#2120). commit e19f3496a58f7e7fa82df75efc86a77b43b70333 Author: Alan Garny Date: Fri Jun 21 16:38:55 2019 +1200 External libraries: everything is now under [OpenCOR]/ext (#2120). We used to have things under, for example, [OpenCOR]/src/plugins/thirdParty/SUNDIALS/ext, but this makes things unnecessarily complicated for Clang-Tidy. commit a388605b3e3f848ee59e41a757f0025f0496821d Author: Alan Garny Date: Fri Jun 21 14:45:27 2019 +1200 Some minor cleaning up. commit 54b5ba2aaba0592e242a947c4d1396a058f07221 Author: Alan Garny Date: Fri Jun 21 10:46:57 2019 +1200 Some minor cleaning up. commit e7bde0a391815a37bbe2be940177f1d41fc5eaa2 Author: Alan Garny Date: Fri Jun 21 10:26:03 2019 +1200 Moved a couple of .clang-tidy files. commit 5ceae0fe8d9ea6b23782b79ef6cf4d9d0d2e0413 Merge: 10a189bf6 ecd21bca5 Author: Alan Garny Date: Tue Jun 18 15:29:47 2019 +1200 Simulation Experiment view: Fixed an issue with the plotting of simulation data being potentially (very) choppy (closes #2118). commit ecd21bca5cb9862a004f130c9683d286707d9705 Author: Alan Garny Date: Tue Jun 18 15:02:45 2019 +1200 Slight update to our downloads page (#2118). commit 1a8f58e7f5dd4af1e9c12b380045ad247b0e6e45 Author: Alan Garny Date: Tue Jun 18 14:59:23 2019 +1200 Simulation Experiment view: fixed an issue with the plotting potentially being (very) choppy (#2118). commit 10a189bf6b1f5d0f4388261e57d95238426d1512 Merge: f784b3726 fde4ab2e8 Author: Alan Garny Date: Tue Jun 18 14:43:28 2019 +1200 Simulation Experiment view: properly disable the `Reset All Model Parameters` button (closes #2116). commit fde4ab2e8c6ed1f6c7f07b380b1f39c12c867979 Author: Alan Garny Date: Tue Jun 18 14:06:06 2019 +1200 Slight updates to our downloads pages (#2116). commit 23d9f7e86312db0daeba97c74e6343dbb7b8584a Author: Alan Garny Date: Tue Jun 18 14:02:11 2019 +1200 Simulation Experiment view: properly reset the `Reset All Model Parameters` button (#2116). commit f784b37269948afd2730af737e2fad8bf06e8917 Merge: d68bbf5a9 c3c6bc1df Author: Alan Garny Date: Tue Jun 18 14:00:33 2019 +1200 Make Qt 5.12.4 LTS happy. commit c3c6bc1df557f30916bb09d1ea6c452a4c0ee8a1 Author: Alan Garny Date: Tue Jun 18 13:16:57 2019 +1200 Make Qt 5.12.4 LTS happy. commit d68bbf5a94407c96a535e41bf49428140030ef9c Merge: 613221b83 ca7bfd00e Author: Alan Garny Date: Mon Jun 17 19:19:52 2019 +1200 New snapshot. commit ca7bfd00eb33443f1782590a896d4f92a03a5f2f Author: Alan Garny Date: Mon Jun 17 19:01:44 2019 +1200 New snapshot. commit 613221b8332c94a4fbd3d94fe70d2d50b14e33af Merge: 4fd5586a3 ef101afeb Author: Alan Garny Date: Mon Jun 17 19:00:03 2019 +1200 Linux: support Ubuntu 19.04 by shipping libtinfo.so.5 (closes #2075). commit ef101afeb2a948cd6063ee13e4964f1bf503690c Author: Alan Garny Date: Mon Jun 17 18:36:29 2019 +1200 Slight update to our downloads page (#2075). commit 14218b36a6d14b9bbede5b0d94796ec7f6fc9580 Merge: be185066f 4fd5586a3 Author: Alan Garny Date: Mon Jun 17 18:30:21 2019 +1200 Merge branch 'master' into issue2075. commit 4fd5586a3ab0cdacd9a01ab0c97f048d512cfbcd Merge: 6b152d396 b3542b08e Author: Alan Garny Date: Mon Jun 17 18:29:43 2019 +1200 OpenSSL: upgraded to version 1.0.2s (closes #2105). commit be185066f51b41de34a15d1d99c2f157c3847046 Author: Alan Garny Date: Mon Jun 17 17:28:48 2019 +1200 Linux: ship libtinfo.so.5 (#2075). commit b3542b08ee17e125978c3e2339ca6e0e2a995a65 Author: Alan Garny Date: Mon Jun 17 16:12:07 2019 +1200 Revert "Only build the OpenSSL package (#2105)." This reverts commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752. commit df4ec55d87249a5f3189614723c9ea4f1e92f86b Author: Alan Garny Date: Mon Jun 17 16:11:21 2019 +1200 Slight update to our downloads page (#2105). commit 5c9b2ab76074b161e5c7b3d23f2bdcc01fc5205e Author: Alan Garny Date: Mon Jun 17 16:11:10 2019 +1200 OpenSSL: binaries for version 1.0.2s (#2105). commit 6a93a87356e1a7d730f146a96700e73f374375d8 Author: Alan Garny Date: Mon Jun 17 15:48:18 2019 +1200 OpenSSL: upgraded to version 1.0.2s (#2105). commit 88c3361b07bd1496c5a6d2ab0d8df6bf95a9e752 Author: Alan Garny Date: Mon Jun 17 15:47:40 2019 +1200 Only build the OpenSSL package (#2105). commit 6b152d3969fd190b1f91f73a70ff93053a0a1cc5 Merge: cc0b9636d 952ba71a6 Author: Alan Garny Date: Fri Jun 14 10:10:52 2019 +1200 CellML support: improved the validation reporting of models with imports (#2109). commit 952ba71a667c017f527ada963fdccb18e47caf09 Author: Alan Garny Date: Fri Jun 14 09:41:05 2019 +1200 CellML support: improved the validation reporting of models with imports (#2109). commit cc0b9636d4c4391038663a552fe5856a668edd00 Merge: 0fd89bfc7 3cbc7051a Author: Alan Garny Date: Thu Jun 13 19:02:27 2019 +1200 CellML support: improved the validation reporting of models with imports (closes #2109). commit 3cbc7051aa8acb2cad2275e06a273b4f1ad3e7c4 Author: Alan Garny Date: Thu Jun 13 18:35:44 2019 +1200 Slight update to our downloads page (#2109). commit facd2c458122056da4a1032e4823f8beb1b0ba99 Author: Alan Garny Date: Thu Jun 13 18:27:46 2019 +1200 URI scheme: fixed a small problem with our new EditingView.setCursorPosition command (#2109). commit a33d588c3b51bc1a57840d81b6c1a6b4dcf7b1dd Author: Alan Garny Date: Thu Jun 13 18:12:08 2019 +1200 Some minor cleaning up. commit c1d554657e488f0de6b7d78eca926e56046077c5 Author: Alan Garny Date: Thu Jun 13 18:06:08 2019 +1200 CellML support: improve validation reporting of models with imports (#2109). commit a63fef61f3e5025e644009c5d068090d3b151fe8 Author: Alan Garny Date: Thu Jun 13 18:03:46 2019 +1200 Core: added a method to retrieve the current view plugin (#2109). commit 769bfc2b18f02f9e914aecbcc2e756c2d1b4af32 Author: Alan Garny Date: Thu Jun 13 16:02:51 2019 +1200 Some minor cleaning up. commit 72c84d0d94e4bc22a838f3d14971dbc969f28892 Author: Alan Garny Date: Thu Jun 13 15:21:01 2019 +1200 CellML support: sort CellML issues by the imported file from which they come (if any) (#2109). commit c314d23c9d133f18e62982816814f3b5d81ed8ff Author: Alan Garny Date: Thu Jun 13 15:20:13 2019 +1200 Raw CellML view: don't mention anymore that an issue may be related to the current CellML file or to one of its (in)directly imported CellML files (#2109). commit ae18d144f4e5dfe4e0134799db3f8d497be99a22 Author: Alan Garny Date: Thu Jun 13 15:18:28 2019 +1200 Some minor cleaning up. commit 883401ca35ef3d179028f3e8c0b5c2f40e6bf80b Author: Alan Garny Date: Thu Jun 13 14:19:32 2019 +1200 CellML support: improve validation reporting by ignoring duplicate issues (#2109). commit 7a8bff9ab536820451cf0b40b8e6da0eddb200b4 Author: Alan Garny Date: Thu Jun 13 14:18:46 2019 +1200 Some minor cleaning up. commit 1d5c28fe4da3030e7f0972fbd128c3b593a8e102 Author: David Brooks Date: Tue Jun 11 16:39:04 2019 +1200 Python: fix wrong return value from `PythonRunScriptPlugin::runScript()` when insufficient arguments. commit c2a7f1bd0e55e78b784a8c6e4058fd3c080bc9b1 Author: David Brooks Date: Tue Jun 11 16:08:35 2019 +1200 Python: minor code tidy. commit bf5ea2fbe86422bdceab183561914df659afc790 Author: David Brooks Date: Tue Jun 11 16:08:19 2019 +1200 General: return the exit code of a CLI plugin command (#2107). commit a9616ffb5f53eddb36f068e3cdb5bdcdd4a9acf5 Merge: 4478cf51c 0fd89bfc7 Author: David Brooks Date: Tue Jun 11 15:55:52 2019 +1200 Merge branch 'master' into pythonplugin commit 0fd89bfc781d9184c105b30129e0af64248a4d16 Merge: 00c94de6f 1cc03e92c Author: Alan Garny Date: Tue Jun 11 15:40:13 2019 +1200 General: return the exit code of a CLI plugin command (closes #2107). commit 1cc03e92cda6209aacd950407ca69eb5698f233e Author: Alan Garny Date: Tue Jun 11 15:10:56 2019 +1200 Slight updates to our downloads page (#2107). commit fdf7ed1aef5add034b400dcbb5cb97efb5ed6cdd Author: Alan Garny Date: Tue Jun 11 15:07:47 2019 +1200 General: return the exit code of a CLI plugin command (#2107). commit 4478cf51ce7e960b5ac893444d5ef82124051c9e Author: David Brooks Date: Tue Jun 11 13:33:55 2019 +1200 Return `sys.exit()` result code from running CLI Python script (fixes dbrnz/opencor/#27). commit d3aeb0f0edbafde8104367cd922e07fb03c172a9 Merge: 5cda8de15 00c94de6f Author: David Brooks Date: Tue Jun 11 10:11:22 2019 +1200 Merge branch 'master' into pythonplugin commit 00c94de6f84c9c7cccde1b56dc749de7e37448ce Merge: 9f52eab06 e14fe9346 Author: Alan Garny Date: Thu May 30 16:13:53 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit e14fe9346bbee876e8a2ab256a97e5536f7c38ed Author: Alan Garny Date: Thu May 30 15:54:41 2019 +1200 Documentation: slight improvement to the way we retrieve size information for our downloads. commit eefa4157902c08c6b312235a58e840e10f6e2967 Merge: f1e260f9c 9f52eab06 Author: Alan Garny Date: Mon May 27 09:12:53 2019 +1200 Merge branch 'master' into issue1801. commit 5cda8de15b311ca2ccc77203d377788b3c27466c Author: David Brooks Date: Fri May 24 11:52:13 2019 +1200 Python: minor tidy. commit 9f52eab06f87664f25863131d5a93956d4c5958e Merge: e1904fdd3 05bb52978 Author: Alan Garny Date: Fri May 24 11:52:03 2019 +1200 CMake: improved the building of our documentation (closes #2103). commit 10441fb8acf9546db5d2ccb4f1c2cb2f48dde41e Author: David Brooks Date: Fri May 24 11:17:08 2019 +1200 Python: work on improving solver's interface (#2091). commit 05bb529782641f72f93ed214b0bce632d5346388 Author: Alan Garny Date: Fri May 24 11:13:26 2019 +1200 CMake: improve the building of our documentation (#2103). commit 0759373bb0ac396e02499d3b177e179d98966918 Author: David Brooks Date: Fri May 24 10:22:40 2019 +1200 Minor tidy up. commit ffe7b7586bb426e672c98b7d60352fbddb86f1e4 Author: David Brooks Date: Thu May 23 20:24:14 2019 +1200 General: we no longer need to set `QT_QPA_PLATFORM_PLUGIN_PATH` (#2089). commit e2c056d2331b4251691e69f7f31fca0ba9c4dca4 Author: David Brooks Date: Thu May 23 19:53:11 2019 +1200 Python: enable the ability to set a simulation's solver and set its properties (#2091). commit 6ab9bd4754b9eb1ca30fcb1791f6fc8ffef1add2 Author: David Brooks Date: Thu May 23 19:40:16 2019 +1200 Python: fix minor typo. commit 367d392c9b04f678c5ac1a7341c7bb7834a3ef6d Author: David Brooks Date: Thu May 23 19:28:37 2019 +1200 Python: remove WIP SolverSupport plugin as we don't yet need it. commit 5383ceafd5326ed3971293ea65336d3aaeef612c Merge: 86f780905 e1904fdd3 Author: David Brooks Date: Thu May 23 19:05:48 2019 +1200 Merge branch 'master' into pythonplugin commit e1904fdd3de3a12027b77c6d6097791e87bfd9d7 Merge: 694a0d624 96cc2cf92 Author: Alan Garny Date: Thu May 23 17:55:38 2019 +1200 Documentation: slight reformatting of our different scripts. commit 96cc2cf929c388d4d6314c0da257b8a0ee69fb6e Author: Alan Garny Date: Thu May 23 17:20:12 2019 +1200 Documentation: slight reformatting of our different scripts. commit 694a0d624c67a926a945a519a08bc99f50ccff5f Merge: 711a827af f2af55ad5 Author: Alan Garny Date: Thu May 23 16:57:12 2019 +1200 New snapshot. commit f2af55ad5824f9b5714222ef1724a1d1dcd2f805 Author: Alan Garny Date: Thu May 23 16:24:43 2019 +1200 New snapshot. commit 711a827afcf705e8dcee69099625cf1c6424a0dd Merge: 2c5063e30 1b1c3e510 Author: Alan Garny Date: Thu May 23 16:22:16 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (closes #2089) and Help window: fixed and issue with a blank page being shown rather than the documentation itself (closes #2099). commit 1b1c3e5109ebba73a68f07608b4d598768d64e99 Author: Alan Garny Date: Thu May 23 15:40:16 2019 +1200 Ubuntu: prevent our binary from being considered as a shared library file on Ubuntu when using Nautilus. commit 404b83232a8a83035bfe319ff8cf4f9b6927bf91 Author: Alan Garny Date: Thu May 23 15:05:08 2019 +1200 Slight update to our downloads page (#2099). commit 598ecc8ddf62ffe65513a64c463190ed2411a8f4 Author: Alan Garny Date: Thu May 23 15:03:50 2019 +1200 Slight update to our downloads page (#2089). commit a3ac89e3ff4189e5c2ec891d095ca59876c60c6a Author: Alan Garny Date: Thu May 23 14:09:48 2019 +1200 CMake: use `CMAKE_AUTORCC`. commit c5f82f3baa5005fa1e1d653b662ec3ab6b5bfd37 Author: Alan Garny Date: Thu May 23 12:27:27 2019 +1200 Some minor cleaning up. commit f37c141c52020fbd6eb7e864b686e7ac5b08ce93 Author: Alan Garny Date: Thu May 23 10:17:16 2019 +1200 Help window: make sure that our user documentation is ready. commit 86f78090548570bb78cda68fc41b70827e7f6e58 Merge: be33eade8 2c5063e30 Author: David Brooks Date: Wed May 22 20:55:37 2019 +1200 Merge branch 'master' into pythonplugin commit 2cb4471a38d9d1e9aa08932e427f2edb16dbb353 Author: Alan Garny Date: Wed May 22 18:54:59 2019 +1200 Help window: make sure that our user documentation is ready. commit f24ad5e970b35a2d9bc5b8374eb01a74168b3ea3 Author: Alan Garny Date: Wed May 22 17:46:43 2019 +1200 CMake: use `CMAKE_AUTORCC`. commit dc722050eaf82e6a5ffb64bae77339e6d13259d4 Author: Alan Garny Date: Wed May 22 15:38:34 2019 +1200 Make Clang-Tidy happy. commit b98c3d05425ed393465b449ca412508c34e69563 Author: Alan Garny Date: Wed May 22 15:25:11 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (#2089). To use QCoreApplication::applicationFilePath() is not good enough, we must use QCoreApplication(pArgC, pArgV).applicationFilePath(). commit 6d91c6a4d7517feba0f121a82975d0787be50e4b Author: Alan Garny Date: Wed May 22 15:07:28 2019 +1200 General: fixed an issue with Qt not being able to find its platform plugin anymore (#2089). The issue is that during some Clang-Tidy related work, I merged initPluginsPath() and initApplication() together, but that was clearly a (very) bad move! commit 2c5063e30615907a7e7a09b05c126d2bc12441f9 Merge: a26b8bab7 9d62a15bf Author: Alan Garny Date: Wed May 22 10:50:01 2019 +1200 libgit2: new binaries for version 0.28.1. commit 9d62a15bf2c227b1b9d0c84f4222352256a055c7 Author: Alan Garny Date: Wed May 22 10:25:36 2019 +1200 Revert "Only build libgit2." This reverts commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe. commit 56b263dc2dd9fef4538a8b9673cf58e2739002d7 Author: Alan Garny Date: Wed May 22 10:25:17 2019 +1200 libgit2: new binaries for version 0.28.1. commit 14ca0751f7d519280dde8d335bc1f7504dc50b4c Author: Alan Garny Date: Wed May 22 10:21:15 2019 +1200 CMake: increased our minimum version required to 3.14. See the note in issue #2088. commit ef2367ade6c392bf21fea62a0e2eb6ffcbc572fe Author: Alan Garny Date: Wed May 22 10:13:20 2019 +1200 Only build libgit2. commit be33eade867809c799c4043f9f0e57dcea666cb2 Author: David Brooks Date: Tue May 21 20:29:21 2019 +1200 Add `SolverSupport` plugin (#2091). commit a26b8bab72f6a9dc086c0b2d321d9c2bdfc00698 Merge: 40a29257c 71f9f05ba Author: Alan Garny Date: Tue May 21 18:46:07 2019 +1200 Issue #2088 cleaning up. commit 71f9f05ba2a6f794d6ba6e37d2faef60c250d36b Author: Alan Garny Date: Tue May 21 18:26:05 2019 +1200 Slight update to our downloads page. commit 749f57be676e07f6df12118e36d58fb77676168a Author: Alan Garny Date: Tue May 21 18:20:30 2019 +1200 Some minor cleaning up. commit 40a29257cb36d639af3805f7c4e3814a82d10377 Merge: 0eabce350 fb643c61d Author: Alan Garny Date: Tue May 21 18:19:31 2019 +1200 libgit2: now only references our copy of `zlib` (closes #2088). commit f5fd13e6534974fffaab551187d8573b79f92ddd Merge: 3f7255a9d fb643c61d Author: David Brooks Date: Tue May 21 18:06:31 2019 +1200 Merge branch 'issue-2088' into pythonplugin commit 3f7255a9d32389a724128d688e33c85bd7ba5152 Author: David Brooks Date: Tue May 21 18:03:07 2019 +1200 Properly initialise NLA solver when the simulation needs one (dbrnz/opencor/#26). commit fb643c61dd2a10b73b55916a72f35c6160af8fea Author: David Brooks Date: Tue May 21 17:22:30 2019 +1200 Use our version of `libgit2` that doesn't duplicate `zlib` libraries (#2088). commit 251bf80ccc78011c3ca6ea1afe56611e1cd42716 Author: David Brooks Date: Tue May 21 13:30:59 2019 +1200 Make sure we use our `zlib` when building `libgit2` (#2088). commit fae78bd4fe9ed1fd8fbaab1285982e2fd3de3412 Merge: 675898cc5 9232ad686 Author: David Brooks Date: Sat May 18 14:25:29 2019 +1200 Merge branch 'issue-2089' into pythonplugin commit 9232ad68690e90f902dca3c718b960cde10e34cd Author: David Brooks Date: Sat May 18 14:23:03 2019 +1200 Set QT_QPA_PLATFORM_PLUGIN_PATH before running OpenCOR (#2089). commit 0eabce350ad15bb8f4849883ae9298be679b6c55 Merge: 88e670c8d 2e0bc8dff Author: Alan Garny Date: Fri May 17 19:29:44 2019 +1200 Some minor cleaning up. commit 2e0bc8dff0761ce7872fb6c4a4c4ebdf574ac235 Author: Alan Garny Date: Fri May 17 19:06:52 2019 +1200 Fixed a test following a change in one of our sample CellML files. commit 9e9a6c2816ec2196a6be4c0b0e4c2e0b2890b630 Author: Alan Garny Date: Fri May 17 18:49:26 2019 +1200 Some minor cleaning up. commit 675898cc596f38ae18419215f367f6fc49074d68 Merge: 3405d0311 944604768 Author: David Brooks Date: Fri May 17 15:23:10 2019 +1200 Merge branch 'master' into pythonplugin commit 944604768276ed815c3cfabed98dff3883e36491 Merge: 0ab973ed7 88e670c8d Author: David Brooks Date: Fri May 17 15:12:50 2019 +1200 Merge remote-tracking branch 'upstream/master' commit 88e670c8d2099075d059b1ffe58c379b0c3a44db Merge: afada809a e0c489985 Author: Alan Garny Date: Fri May 17 14:40:14 2019 +1200 Simulation support: allow a remote SED-ML file to be run headless (closes #2085). commit 0ab973ed78f8a575775b65e0f6feed27ad128445 Merge: afada809a e0c489985 Author: David Brooks Date: Fri May 17 13:00:52 2019 +1200 Merge branch 'agarny-issue2085' commit e0c489985c43c72c177682bac43a674d204e9976 Author: Alan Garny Date: Fri May 17 12:32:11 2019 +1200 Slight update to our what is new page (#2085). commit 411bb845fecf7747e17342c177730afb772a33d2 Author: Alan Garny Date: Fri May 17 12:29:02 2019 +1200 Slight updates to our downloads pages (#2085). commit 252a1b1bba1652b83f6532ebc3e6c69a2a8fce9f Author: Alan Garny Date: Fri May 17 12:24:31 2019 +1200 Make sure that we have a main window before trying to retrieve our central widget (#2085). commit 255f353f5413db49e6c3bd967939f77b409d158a Author: Alan Garny Date: Fri May 17 12:16:41 2019 +1200 Some minor cleaning up. commit de39c925fadab51f56629cbc341ad7261c85b1c8 Author: Alan Garny Date: Fri May 17 12:05:57 2019 +1200 CellML support: don't ask whether we have a busy widget (#2085). commit b5494a56d15cb5097d5c7ece36f438afec6b1915 Author: Alan Garny Date: Fri May 17 11:57:56 2019 +1200 Some minor cleaning up. commit 4f80f9b8edd01afea7b918baa6fe3c65604bd545 Author: Alan Garny Date: Fri May 17 11:55:29 2019 +1200 Replaced calls to `Core::centralWidget()->xxxBusyWidget()` with called to `Core::xxxCentralBusyWidget()` (#2085). commit ff5b8f8014acfeeccf948d00257495441fa481c9 Author: Alan Garny Date: Fri May 17 11:47:07 2019 +1200 Some minor cleaning up. commit 1fd378dcd6f4b482484f14a80f45ec341a1bdcdd Author: Alan Garny Date: Fri May 17 11:23:09 2019 +1200 Some minor cleaning up. commit 3405d0311b312dc9b30a8ea547d441a2700a98f9 Author: David Brooks Date: Thu May 16 22:24:02 2019 +1200 Python: fix typo... commit 17ebcd44d9252181d48f48254b40dc96390b278d Author: David Brooks Date: Thu May 16 21:24:28 2019 +1200 Python: tweaks to `run_python` script for Windows. commit 02d010bfd13a317e18b2c521fa2cb95e713c9e7a Author: David Brooks Date: Thu May 16 19:08:06 2019 +1200 Python: update PythonPackages plugin for Linux and Windows. commit 0fa9218af2ed6a31159bf1f599468949e21f80a5 Author: David Brooks Date: Thu May 16 19:07:33 2019 +1200 Python: provide `VBS` scripts for Jupyter under Windows and tidy CMake install code. commit 95bd59fe5a077ac769a57bafb6f6b2ddcc9c756e Author: David Brooks Date: Thu May 16 09:29:21 2019 +1200 Python: minor tidy. commit 446f4f4f216d9c1604b87b10f7fa194e15e1f59e Author: David Brooks Date: Thu May 16 09:28:41 2019 +1200 Python: don't try to get values from an uninitialised data store. commit ac725ec6d163e2131d4e83aa718a84a276f7e239 Author: David Brooks Date: Thu May 16 09:27:33 2019 +1200 Python: raise exception for an invalid simulation when trying to run it, not at open time. commit bab31ac7af6ba5bec09647b78b95fc254a910e3f Author: David Brooks Date: Thu May 16 08:56:00 2019 +1200 Python: use the new `RunPythonScript` plugin to run Python from the CLI. commit 8ff44309410b2a429a18599979785149b1512518 Author: David Brooks Date: Tue May 14 21:33:34 2019 +1200 Python: add `RunPythonScript` plugin to run a Python file from the CLI. commit dfc95a3cb555a09825076c48ee49112d7098aa2c Author: David Brooks Date: Tue May 14 21:32:35 2019 +1200 Python: use reworked code to initialise and run a simulation under Python. commit 57167357154e608ee23fb55f324971b8ad887781 Author: David Brooks Date: Tue May 14 14:06:51 2019 +1200 Merge branch 'master' into pythonplugin commit afada809aedf898d38279370ba1f07e79260b52f Merge: 04269d194 2158c2b73 Author: Alan Garny Date: Tue May 14 13:04:11 2019 +1200 Simulation support: improved our checking of issues. commit 2158c2b7349ff4b44e52b8b1446a69e09695be6b Author: Alan Garny Date: Tue May 14 10:59:36 2019 +1200 Simulation support: improved our checking of issues. commit 33b009d612f462a331d8d332798ef001c837773f Author: Alan Garny Date: Tue May 14 09:26:40 2019 +1200 Some minor cleaning up. commit 798418a276486a87f764b5870d8eb0f30e208e3b Author: David Brooks Date: Mon May 13 18:52:08 2019 +1200 Python: add minor comments. commit a4b59b64fb35eb65663c1a71320b86aefa2a3238 Author: David Brooks Date: Mon May 13 18:48:40 2019 +1200 Python: update version of `ipykernel`. commit b61b1bf84b598331bfe1edd92196465eab274bc8 Author: David Brooks Date: Mon May 13 18:37:33 2019 +1200 Python: tweak `run_python.bat` for Windows. commit ad576b71837bec92f67969de466cc79ba31eb1eb Author: David Brooks Date: Mon May 13 18:36:39 2019 +1200 Python: under Windows, the typedef for `SimulationDataUpdatedFunction` depends on the version of Visual Studio. commit f75f4a894595b040b4a7d17c0a599d5002ef8d86 Author: David Brooks Date: Mon May 13 18:27:18 2019 +1200 Python: rationalise headers to remove duplicate definition of `SimulationDataUpdatedFunction`. commit 498a6a2c1308e63be7c455a206c161ac4fc2d140 Author: David Brooks Date: Mon May 13 17:04:50 2019 +1200 Python: allow a user to query the validity of a simulation and get details of any issues; don't try to run an invalid simulation. commit 04269d194b9fa3376bc1e4cec85cbfb52af06ece Merge: 45b51147b 0e63e8f43 Author: Alan Garny Date: Mon May 13 13:35:58 2019 +1200 New snapshot. commit 0e63e8f438da2c97d3b582f1b568a6807eeed7ec Author: Alan Garny Date: Mon May 13 13:07:34 2019 +1200 New snapshot. commit 21d92d9145abd7da47eb5675344bd12fa614da61 Author: Alan Garny Date: Mon May 13 13:06:19 2019 +1200 Slight updates to our downloads pages. commit 45b51147bd8738f6b7318de300551334a45aba16 Merge: 7c290c590 762546bec Author: Alan Garny Date: Mon May 13 12:54:27 2019 +1200 Generalise reporting of a simulation's issues (#2080). commit 762546bec779495f9dc7694a4e8538213731e4a8 Author: Alan Garny Date: Mon May 13 12:33:16 2019 +1200 Some minor cleaning up. commit dee478082eb1c55da6894eaad96ce60d66f5cb5f Author: Alan Garny Date: Mon May 13 12:01:59 2019 +1200 Some minor cleaning up. commit 5db96513cb241decd1e056ed33189914aa828969 Merge: c9901f7d8 0203602ef Author: David Brooks Date: Mon May 13 08:42:27 2019 +1200 Merge branch 'issue-2080' into pythonplugin commit 0203602efbba4458b1911c2b148dab76159b95aa Author: David Brooks Date: Mon May 13 08:40:34 2019 +1200 Missed a commit... (#2080). commit d6a58c9595fd4f1aac5ec61705428b921947a33b Author: David Brooks Date: Mon May 13 08:16:44 2019 +1200 Remember if a simulation has any blocking issues (#2080). commit c9901f7d8a6aa897776d5e40dc71778aea11a89d Merge: a33f2da42 2512e39ad Author: David Brooks Date: Sun May 12 20:28:16 2019 +1200 Merge branch 'issue-2080' into pythonplugin commit 2512e39ad5fb51592a8b783e2b19f6512c367f6b Author: David Brooks Date: Sun May 12 20:27:10 2019 +1200 Minor code tidy (#2080). commit a33f2da42131845c8bb0419942eea618a22958e1 Merge: f4f39aa55 4cabf7f0f Author: David Brooks Date: Sun May 12 20:14:23 2019 +1200 Merge branch 'issue-2080' into pythonplugin commit 4cabf7f0f11ce910cb01d87d13b38c8eee34d04f Author: David Brooks Date: Sun May 12 19:41:03 2019 +1200 ODE/DAE error message is now in a different plugin (#2080). commit 875912885cd1553be6acf03f881c1a9b10601234 Author: David Brooks Date: Sun May 12 19:23:55 2019 +1200 Generalise reporting of a simulation's issues (#2080). commit f4f39aa55f4f0551d0714a7ae555805a22a3aeef Merge: ac8ad8496 7c290c590 Author: David Brooks Date: Sun May 12 16:06:17 2019 +1200 Merge branch 'master' into pythonplugin commit 7c290c590ffe6d75899b1051a79239a9a1466328 Merge: 5eb306c3b 1c810ae60 Author: Alan Garny Date: Sun May 12 11:59:08 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 1c810ae60f74e1c7d61dece74eb3b3aa02ddabe3 Author: Alan Garny Date: Sun May 12 11:00:07 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit ac8ad84968413383f9a0aa097493a556e1f4737c Author: David Brooks Date: Sat May 11 11:11:44 2019 +1200 Python: update IPython and Jupyter packages. commit b2ffa18284b5d695202259787e65dfe4f2850aa8 Merge: 49a5a5782 f7ef3cc5d Author: David Brooks Date: Fri May 10 22:03:04 2019 +1200 Merge branch 'pythonplugin' of git://github.com/dbrnz/opencor into pythonplugin commit 49a5a5782709bb36502a61c5d25608361b3c327a Author: David Brooks Date: Fri May 10 22:01:58 2019 +1200 Python: update typedef for VC 2017. commit f7ef3cc5d4b1b9869a1b608162ceae6f8eb71b07 Author: David Brooks Date: Fri May 10 21:49:29 2019 +1200 Python: fix `run_python` script. commit 0c33c1353721655a35ec5f4629832c0d4565f49a Author: David Brooks Date: Fri May 10 20:57:11 2019 +1200 Python: update packages for Linux. commit ca7dbf5526ad5c68956dbd219a298751b2528758 Author: David Brooks Date: Fri May 10 18:09:13 2019 +1200 Python: fix typo. commit 1c41987917be430ebd17e87475f7c4c0e0d6c3b4 Author: David Brooks Date: Fri May 10 17:55:05 2019 +1200 Python: latest Jupyter doesn't recognise `localhost` so explicitly use `127.0.0.1` as listen address. commit 3d62f0b7aef17c06cabe1988eae95cec1debd2ec Author: David Brooks Date: Fri May 10 15:44:19 2019 +1200 Python: make sure `pip` is current; update JupyterLab to 0.35.6. commit e351818c310dbca92ff8374d723a974c08aa086c Author: David Brooks Date: Fri May 10 14:41:38 2019 +1200 Python: add helper scripts for running Python scripts from the command line. commit 17eff3cbcdabf5c9f7e9dedf4699e71ec469cf94 Author: David Brooks Date: Fri May 10 11:44:09 2019 +1200 Python: correctly set a simulation's solver and its properties (#2078). commit 9ab9c6101f2ea870b4fc588106ae7e7e8b1f9ab8 Author: David Brooks Date: Fri May 10 11:41:01 2019 +1200 Python: minor code tidy. commit cd9c6cbfa3dbc680a56aa4e3cb3cf525d74ce5b1 Author: David Brooks Date: Tue May 7 11:29:47 2019 +1200 Python: minor fixes to get a clean debug build. commit a145ccac143d3bcc1c9663c39273f1a700ec22e6 Merge: a2ab60c7b 5eb306c3b Author: David Brooks Date: Mon May 6 09:36:43 2019 +1200 Merge branch 'master' into pythonplugin commit a2ab60c7b92c72fb878a3d2e0637b050d016fea7 Author: David Brooks Date: Mon May 6 09:34:22 2019 +1200 Python: tidy code. commit 5eb306c3bd2550877a5dd7d93a5a16a01fdbbe78 Author: Alan Garny Date: Mon May 6 09:33:44 2019 +1200 Some minor cleaning up. commit c17123b56b3c897c75f183103c102c46deb2dd70 Merge: 8ffeae512 874db2a40 Author: Alan Garny Date: Sun May 5 17:52:48 2019 +1200 Merge pull request #2077 from agarny/new-snapshot New snapshot. commit 874db2a40db47a5e0ed4a909272fb203d3503eb8 Author: Alan Garny Date: Sun May 5 17:25:14 2019 +1200 New snapshot. commit 28689ad883c59b8fdbb8adc7a0ec2fb39a7fcd44 Author: Alan Garny Date: Sun May 5 17:23:13 2019 +1200 Some minor cleaning up of our downloads pages. commit a25b4079d65442754082d48f13bbf94318688af0 Author: Alan Garny Date: Sun May 5 17:19:31 2019 +1200 Slight update to our supported platforms page. commit 8ffeae512f10627948453db22bdfb5c5519dbeaf Merge: 1d7133a2a 4e5d5427c Author: Alan Garny Date: Sun May 5 00:23:11 2019 +1200 Merge pull request #2076 from agarny/cleaning-up Some minor cleaning up. commit 4e5d5427c949b22f0603215d5f75037fdc46cf94 Author: Alan Garny Date: Sat May 4 23:50:48 2019 +1200 Some minor cleaning up. commit e6732bd9a2c87d51bd632db786bbd80f9d41630a Author: Alan Garny Date: Sat May 4 23:43:03 2019 +1200 Some minor cleaning up. commit bd8abe91852b2706d8defe85d3a3fc80f74d6ec5 Author: Alan Garny Date: Sat May 4 23:41:09 2019 +1200 Some minor cleaning up. commit 49e892c252ae57fbed12aa399523fd3b38ff04e6 Author: David Brooks Date: Fri May 3 10:03:27 2019 +1200 Python: add compiler pragmas for Linux build. commit ff470f7d7f0fb6b6a6f5521f919600fc9d2c01e7 Author: David Brooks Date: Thu May 2 21:47:41 2019 +1200 Sundials: our use of `NV_DATA_S` requires an additional diagnostic pragma. commit b547145be058ec844a0f4195f5d72ddd8e0e1ed1 Author: David Brooks Date: Thu May 2 21:44:57 2019 +1200 Python: use `pythonbegin` and `pythonend` headers for compiler pragmas. commit dfb40b45891894ad8137495c476d8f79e4e2d6fa Author: David Brooks Date: Thu May 2 15:02:21 2019 +1200 Python: fix compiler `shadow` warning. commit 2efab8b294efccaf5b8438ffb7bf2216b709cf75 Author: David Brooks Date: Thu May 2 15:01:57 2019 +1200 Python: tidy up use of includes. commit 082a75e332e00edf46c62d2b7170cd39816cb39b Author: David Brooks Date: Thu May 2 15:01:15 2019 +1200 Python: tidy code. commit 4a3c18ebe0c2ebbc868f5894e53128c7f1057775 Author: David Brooks Date: Thu May 2 15:00:33 2019 +1200 Python: use a function to cast a Python object to Python Qt. commit 6b973962512e2e9bf98d53e1f0d4b699ed9fecf5 Author: David Brooks Date: Thu May 2 14:57:01 2019 +1200 Python: use `pragma` to resolve compiler warnings. commit 6db5f69dccc002d8324c460097bad3a2c7df7f4f Author: David Brooks Date: Thu May 2 14:51:54 2019 +1200 Python: clean up merge from `master`. commit 25f5c08091d448e364f84e49a472619c34884624 Author: David Brooks Date: Thu May 2 14:46:10 2019 +1200 Python: references to `enum` constants now include a type. commit 2cf32137d1a1b453c79040744b3ca2e24cbe7fbd Author: David Brooks Date: Thu May 2 14:40:40 2019 +1200 Python: add missing destructor for interface. commit fa6d1073d27c22d4332f622dcd2810be2c63612f Author: David Brooks Date: Thu May 2 14:39:11 2019 +1200 Python: tidy up name of include file. commit 1d7133a2afe2541ed29cb803a51e080bc6e150d1 Author: Alan Garny Date: Tue Apr 30 16:31:36 2019 +1200 Some minor cleaning up. commit 36394398590d1cbbf5db67f4fd3d3ceaf0ff3a2c Author: Alan Garny Date: Tue Apr 30 15:03:36 2019 +1200 Some minor cleaning up. commit 7f5853840d57659c65d1cc1b8aedc6feac651c88 Author: Alan Garny Date: Tue Apr 30 14:45:21 2019 +1200 Some minor cleaning up. commit 782bfd7bb005d6741c3e753c23152cb0d902a0af Merge: a585e6b24 c526c5fa8 Author: David Brooks Date: Tue Apr 30 14:45:12 2019 +1200 Merge branch 'master' into pythonplugin commit c526c5fa85071e5d084472e3298c7de7c2f45bf9 Author: Alan Garny Date: Fri Apr 26 10:59:51 2019 +1200 Some minor cleaning up. commit f1e260f9c755ee6e37c011bd2d0d7c3a4ff48fd0 Merge: 8f1fa72a7 6f6662cd6 Author: Alan Garny Date: Wed Apr 24 17:37:43 2019 +1200 Merge branch 'master' into issue1801. commit 6f6662cd60ab90511687066d51932ce5ac42fa26 Author: Alan Garny Date: Wed Apr 24 17:36:25 2019 +1200 Some minor cleaning up. commit 8f1fa72a70ef56e19e545f317a58bf10ab9d9ded Merge: 474810285 31dbf734b Author: Alan Garny Date: Wed Apr 24 00:03:29 2019 +1200 Merge branch 'master' into issue1801 commit 31dbf734be0b54ec81d17824a60301f4abfff377 Merge: 7dd879fae e0f9baf5a Author: Alan Garny Date: Tue Apr 23 17:01:35 2019 +1200 Various improvements. commit e0f9baf5ab3be566dbb83c73e3caa4cbbecf4655 Author: Alan Garny Date: Tue Apr 23 16:11:34 2019 +1200 SED-ML support: improved our detection of SED-ML files. commit 7de3defc22e47dd8f71b5b48799e42b86c2831ff Author: Alan Garny Date: Tue Apr 23 15:47:27 2019 +1200 CellML Annotation view: make sure that the qualifier look up is retranslated if needed. commit 164184ad4d90ff82e0efe24b53a2e42be537f923 Author: Alan Garny Date: Tue Apr 23 15:34:12 2019 +1200 Some minor cleaning up. commit 565c6db178057eae6c017583732f4c8e0f180cc6 Author: Alan Garny Date: Tue Apr 23 15:01:11 2019 +1200 Some minor cleaning up. commit 2eb23fd1259b8880fafe3254525c0ee79094d48e Author: Alan Garny Date: Tue Apr 23 14:46:55 2019 +1200 Some minor cleaning up. commit 198f035ab5d12dd82baca3cf09c6d6ad7c4d1e55 Author: Alan Garny Date: Tue Apr 23 14:46:32 2019 +1200 Some minor cleaning up. commit 27265747f89dfd9c72187400c490ee4e531d926c Author: Alan Garny Date: Tue Apr 23 14:15:58 2019 +1200 Some minor cleaning up. commit 3c9d6a5b5474971a7668324562d52e4f36b6dc23 Author: Alan Garny Date: Tue Apr 23 14:04:07 2019 +1200 Some minor cleaning up. commit f503fa9e4b3dfe11277e0857a51b4f2204e90dca Author: Alan Garny Date: Tue Apr 23 13:38:04 2019 +1200 Some minor cleaning up. commit b5dd9f4c6792506cfd20cc315e439800367a4778 Merge: 372e74154 7dd879fae Author: Alan Garny Date: Tue Apr 23 13:29:28 2019 +1200 Merge branch 'master' into cleaning-up. commit 372e74154851a2ab568a0986e16e351da874e297 Author: Alan Garny Date: Tue Apr 23 13:29:13 2019 +1200 Some minor cleaning up. commit 99a6243041a88e502aa19d87e077bc34a0109037 Author: Alan Garny Date: Tue Apr 23 13:14:52 2019 +1200 Some minor cleaning up. commit 7dd879fae41adff44af23a072b50cbd77c022666 Merge: 04dbdcdc3 6d6470a77 Author: Alan Garny Date: Tue Apr 23 13:00:06 2019 +1200 Renamed QScintillaSupport to QScintillaWidget (closes #2066). commit 711d2e2018289d24f3047e6208f13958ced7cefc Author: Alan Garny Date: Tue Apr 23 12:53:44 2019 +1200 Some minor cleaning up. commit 01451bf4f3f338f58479f03519c58834ba2cd9e0 Author: Alan Garny Date: Tue Apr 23 12:37:05 2019 +1200 Some minor cleaning up. commit 6d6470a77d45719be99fd1170667ebaa3603b267 Author: Alan Garny Date: Tue Apr 23 12:23:27 2019 +1200 Slight update to our downloads page (#2066). commit c034c881e8c5e024f72b68e71f524f378b3d1136 Author: Alan Garny Date: Tue Apr 23 12:21:28 2019 +1200 Renamed QScintillaSupport to QScintillaWidget (#2066). commit 04dbdcdc3f503ce017f2ea662a69bf5fec9fa51d Merge: df000d4f9 523084da4 Author: Alan Garny Date: Tue Apr 23 12:17:06 2019 +1200 PMR Workspaces window: first list changed files and then show the user's comment (in the synchronisation dialog) (closes #2065). commit 523084da4de794504dd292eb5fe86a57c8fd2f1c Author: Alan Garny Date: Tue Apr 23 11:56:54 2019 +1200 Slight updates to our what is new and downloads pages (#2065). commit 161bfded263cdc25134e6a65a1eb3d58356c0d83 Merge: 675721404 df000d4f9 Author: Alan Garny Date: Tue Apr 23 11:52:13 2019 +1200 Merge branch 'master' into issue2065. commit df000d4f918aa000fbb55aa47977b07bf068c705 Merge: a88d21d9f bb5adbd23 Author: Alan Garny Date: Tue Apr 23 11:51:42 2019 +1200 Mesa: upgraded to version 19.0.2 (closes #2070). commit 675721404825fc41091345f98442d1e7b8ed87ff Author: Alan Garny Date: Tue Apr 23 11:50:55 2019 +1200 PMR Workspaces window: swapped the message and changes widgets (#2065). commit 9acd7c8c83a97a8c2fa2d4af03c7e709c04c8e69 Author: Alan Garny Date: Tue Apr 23 11:47:07 2019 +1200 Some minor cleaning up. commit bb5adbd238118140b9ba69a891578b5a011ea5a1 Author: Alan Garny Date: Tue Apr 23 11:23:04 2019 +1200 Revert "Only build our Mesa package (#2070)." This reverts commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41. commit 667789a837b20b6a5bf909a6a1e36ba631021b58 Author: Alan Garny Date: Tue Apr 23 11:22:16 2019 +1200 Slight update to our downloads page (#2070). commit d38102e0b79a6efd52efd52fd13de9eb6ebade67 Author: Alan Garny Date: Tue Apr 23 11:20:26 2019 +1200 Mesa: binary for version 19.0.2 (#2070). commit e2c7d9e3f0dc984ebb824914bfb28e41d99316ea Author: Alan Garny Date: Tue Apr 23 11:14:30 2019 +1200 Mesa: upgrade to version 19.0.2 (#2070). commit 9c28f4552bc8910833797c50ae36eb3c7b3eae41 Author: Alan Garny Date: Tue Apr 23 11:12:53 2019 +1200 Only build our Mesa package (#2070). commit a88d21d9f0d2a4d07c33e3ab587828c8106c2642 Merge: 451c9c73f 186d08340 Author: Alan Garny Date: Tue Apr 23 11:09:27 2019 +1200 jQuery: upgraded to version 3.4.0 (closes #2068). commit 186d0834009c4dd875cfbb94af1d1d9fdc424223 Author: Alan Garny Date: Tue Apr 23 10:51:08 2019 +1200 Slight update to our documentation (#2068). commit 83e5198bd33db350900975c1b275cdcdb4f5c8bd Merge: 9678bb581 451c9c73f Author: Alan Garny Date: Tue Apr 23 10:49:07 2019 +1200 Merge branch 'master' into issue2068. commit 451c9c73f65a4880f6be5ecbb3302fd231fa85ae Merge: 0715bcf3c b6a8cdee8 Author: Alan Garny Date: Tue Apr 23 10:48:42 2019 +1200 libSBML: upgraded to version 5.18.0 (closes #2064). commit b6a8cdee8f536d12a0e98809644b59fe6ab658d5 Author: Alan Garny Date: Tue Apr 23 10:24:35 2019 +1200 libSBML: updated our tests (#2064). commit 9678bb5814451d634ce54d6b31d0125e91507a68 Author: Alan Garny Date: Tue Apr 23 10:18:58 2019 +1200 jQuery: upgraded to version 3.4.0 (#2068). commit 5b2ea9dc53fd7ca72f697cbc8c5410cd107e780a Author: Alan Garny Date: Tue Apr 23 10:13:00 2019 +1200 Make sure that we can use libSBML 5.18.0 on macOS (#2064). commit 48a8d0167b8acbc306faf4da8e93bf83eabc9c16 Author: Alan Garny Date: Tue Apr 23 10:12:34 2019 +1200 Revert "Only build the libNuML and libSEDML packages (#2064)." This reverts commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e. commit 9739ffe162fc8727366c848fc1c92c8773e39437 Author: Alan Garny Date: Tue Apr 23 10:12:14 2019 +1200 libNuML and libSEDML: new binaries following the release of libSBML 5.18.0 (#2064). commit c4dd8a5f0e962e57e5b98eb12cf2b505fdc2548e Author: Alan Garny Date: Tue Apr 23 09:56:54 2019 +1200 Only build the libNuML and libSEDML packages (#2064). commit 73d243169581f9323465bf2ab17d33dd34d38f3e Author: Alan Garny Date: Tue Apr 23 09:46:54 2019 +1200 Revert "Only build the libSBML package (#2064)." This reverts commit 2972166c4eb15c5adbd2ff52006226a481d198b4. commit d663859855fcf3142fe1483433ff291ae6d3827b Author: Alan Garny Date: Tue Apr 23 09:46:36 2019 +1200 Slight update to our downloads page (#2064). commit 4d966812f120bf9f203cfe633ab478c5dae33ec5 Author: Alan Garny Date: Tue Apr 23 09:46:16 2019 +1200 libSBML: binaries for version 5.18.0 (#2064). commit 62385b8b0f7ee05c359ddbdce66795a7b131a052 Author: Alan Garny Date: Tue Apr 23 09:14:25 2019 +1200 libSBML: upgraded to version 5.18.0 (#2064). Note: on Windows, we are now using MSVC 2017 hence we also updated the Windows dependencies. commit 2972166c4eb15c5adbd2ff52006226a481d198b4 Author: Alan Garny Date: Tue Apr 23 09:06:06 2019 +1200 Only build the libSBML package (#2064). commit 0715bcf3cebecf2914979b28eaa1f4089fd9c7e8 Merge: 3781995c5 41eeb2a6b Author: Alan Garny Date: Mon Apr 22 18:18:56 2019 +1200 Added support for Clang-Format (closes #2061). commit 41eeb2a6bd529f1c21cdd2817f2c1299727f033f Author: Alan Garny Date: Mon Apr 22 17:39:20 2019 +1200 Clang-Tidy: re-disable llvm-include-order (#2061). Indeed, we want Clang-Format to order things, but we don’t want Clang-Tidy to check for them since in some cases our includes may not be sorted, e.g. when we include CellML API related orders since we need to guard them with cellmlapibegin.h and cellmlapiend.h. commit 5556cfd68487b0af9b3d1fbc38d129b42df7b6ce Merge: 050f4e6eb 438d930d3 Author: Alan Garny Date: Mon Apr 22 17:35:01 2019 +1200 Merge branch 'issue2061' of https://github.com/agarny/opencor into issue2061 commit 050f4e6ebcff4c483e7ade51039c63abacfb8a2c Author: Alan Garny Date: Mon Apr 22 17:34:56 2019 +1200 Windows batch file to format our code (#2061). commit 438d930d3bc85b38853b6cacea7a803efbc56ac9 Merge: 9ba81a25c 3781995c5 Author: Alan Garny Date: Mon Apr 22 16:22:27 2019 +1200 Merge branch 'master' into issue2061. commit 3781995c514311e7862e061f7c8eb9850cfaf929 Merge: fc33ca3b8 9a2316631 Author: Alan Garny Date: Mon Apr 22 16:19:32 2019 +1200 Some minor cleaning up. commit 9a23166318b4ef0df8d09a6fad0046cc7c9cf363 Author: Alan Garny Date: Mon Apr 22 15:44:11 2019 +1200 Some minor cleaning up. commit 65d1a0aaff85aeeafc542765d045c97e5fe6083d Author: Alan Garny Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 9ba81a25c02c3e961075a966e8f2429dde284748 Author: Alan Garny Date: Mon Apr 22 15:37:32 2019 +1200 Some minor cleaning up. commit 1a62b4f9d5e01d721aabaf4c9e9b43585214be7b Author: Alan Garny Date: Mon Apr 22 14:38:08 2019 +1200 Linux/macOS script to format our code (#2061). commit d82e7f84cf4916fa5f008e788af2653d71f52c52 Author: Alan Garny Date: Mon Apr 22 13:36:17 2019 +1200 Initial .clang-format file (#2061). Note: we used to disable llvm-include-order in Clang-Tidy, but we should have it back. This means that some of our files (e.g. src/plugins/support/CellMLSupport/src/cellmlfile.cpp) will have to be reformatted a bit so that headers don’t get wrongly sorted (because of our, say, inclusion of “cellmlapibegin.h” and “cellmlapiend.h”). commit fc33ca3b8fdb46cf0b468d5fe046890948d07e95 Merge: 77cd1f25e f456f5f65 Author: Alan Garny Date: Mon Apr 22 13:11:31 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (closes #2057). This PR was checked (on Jenkins) against Clang-Tidy, but this is clearly not going to be a long-term solution for OpenCOR since it really takes a long time (between 1h and 2h to do analyse both the release and debug versions of OpenCOR). So, I am going to disable the Clang-Tidy checks in Jenkins, which means that we will have to rely on people (me?) enabling Clang-Tidy once in a while locally (there is an `ENABLE_CLANG_TIDY` option in OpenCOR's CMake script) to make sure that our codebase is still "OK". commit f456f5f6578582b257306198e6d82bbc10064c0b Author: Alan Garny Date: Mon Apr 22 10:45:08 2019 +1200 Make sure that our Python and PythonPackages plugins have been dealt with before building our documentation. commit e8a4abdaa54fef32f5f6061680fdcaf61b064fb1 Author: Alan Garny Date: Sun Apr 21 18:33:36 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (#2057). commit 7037071a0387b3466f28fa4ce1cbd26d9705cd3c Author: Alan Garny Date: Sun Apr 21 15:13:06 2019 +1200 Added support for Clang-Tidy and, on macOS, for some additional Clang warnings (#2057). commit 77cd1f25e08ba7947e11c09b1a0212e2d8d7570c Merge: e7beddd92 989c8fdfa Author: Alan Garny Date: Tue Apr 9 16:46:51 2019 +1200 Cleaning up. commit 989c8fdfac895c520f1846585f54b78a11b37939 Author: Alan Garny Date: Tue Apr 9 16:20:22 2019 +1200 Some minor cleaning up. commit f74d0a4010c7140f47bb56f5974e05a7f12b7ed2 Author: Alan Garny Date: Tue Apr 9 16:03:33 2019 +1200 Some minor cleaning up. commit f5657171ddd17dcfe87a95e97432d4d4f07017e8 Author: Alan Garny Date: Tue Apr 9 15:58:58 2019 +1200 Some minor cleaning up. commit 51700dfc2549f86aa0f64eed902c9278f5996481 Author: Alan Garny Date: Tue Apr 9 15:46:58 2019 +1200 Some minor cleaning up. commit e7beddd92f9b052403d7a1e3c973a63e3b8c2e74 Merge: 90cf7ebdd 33b39c059 Author: Alan Garny Date: Tue Apr 9 15:30:23 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 33b39c059b39e1701945735d90d8a206ba6c1fc9 Author: Alan Garny Date: Tue Apr 9 14:46:28 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 96ae94d6b3fde4e3adf0800319d46f0314bb58f2 Author: Alan Garny Date: Tue Apr 9 14:44:44 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 041d7334987234ba73ee81ffa1b31ecbf708bc13 Author: Alan Garny Date: Tue Apr 9 14:36:44 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 3f53d850a7fbc8422b16b97ffb365f14a399f4ef Author: Alan Garny Date: Tue Apr 9 14:34:50 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 7fd5bb4682e36bfc26736fb6d6151545ac77446e Author: Alan Garny Date: Tue Apr 9 14:29:49 2019 +1200 Some minor cleaning up. commit 6713cc4e24f0460c7175afd46346135590811880 Author: Alan Garny Date: Tue Apr 9 14:27:04 2019 +1200 Replaced some `enum`s with some `enum class`s. commit d0a58ea866f5d0b402f398da8f262019b830e40e Author: Alan Garny Date: Tue Apr 9 14:21:09 2019 +1200 Some minor cleaning up. commit 2e1c1c557effc50ebabfa70e0b8727104aa3bad2 Author: Alan Garny Date: Tue Apr 9 14:15:56 2019 +1200 Some minor cleaning up. commit 862fa3eaad51a5ef75edffba000034fcfb639a47 Author: Alan Garny Date: Tue Apr 9 13:52:07 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 0f0b963779e132a834bac5206ae4f002c3a9a840 Author: Alan Garny Date: Tue Apr 9 13:35:05 2019 +1200 Replaced some `enum`s with some `enum class`s. commit d2daa1e833d2be4ff63bf4e5160e6a45458c0364 Author: Alan Garny Date: Tue Apr 9 13:31:53 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 56fa3904bb09ed4231b27ee481165d708529262f Author: Alan Garny Date: Tue Apr 9 13:30:34 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 07e23d454611c842af2ace9f80630e727f33390d Author: Alan Garny Date: Tue Apr 9 13:28:32 2019 +1200 Replaced some `enum`s with some `enum class`s. commit cf01697c8a9a1999139dd8a18f5bc86372e4428f Author: Alan Garny Date: Tue Apr 9 13:24:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 452d601300388f4e87fb097406ed32477746400f Author: Alan Garny Date: Tue Apr 9 13:19:51 2019 +1200 Some minor cleaning up. commit 3f7558a4eb5396f7ce11da052927a967e30e9760 Author: Alan Garny Date: Tue Apr 9 13:15:13 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 6a85de55847ee520f13adb38f813b80de68cc437 Author: Alan Garny Date: Tue Apr 9 13:13:25 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 40127d1fed497623d92f5bcca5b044b3a1358549 Author: Alan Garny Date: Tue Apr 9 13:11:42 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 1d6aaa90e758e9c035f16a9e5b14532d5c2d7d92 Author: Alan Garny Date: Tue Apr 9 13:06:06 2019 +1200 Replaced some `enum`s with some `enum class`s. commit c711b2efddb9e84beaabbe027c29dabb8d2030e7 Author: Alan Garny Date: Tue Apr 9 10:59:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 2e9c7249b9f307d299a1c3540264f5a72a2be39e Author: Alan Garny Date: Tue Apr 9 10:55:40 2019 +1200 Replaced some `enum`s with some `enum class`s. commit be3e6599794e3dfe1471d84ab425489df7f11d39 Author: Alan Garny Date: Tue Apr 9 10:54:14 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 28b2036aa224730f1f1198eb762ec4905fa077ab Author: Alan Garny Date: Tue Apr 9 10:52:02 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 1060e3ab424c3ce6418ac0c0d7e6dcd9ea771f3d Author: Alan Garny Date: Tue Apr 9 10:49:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 8228242f40ceb66b99d3015ce19785b9baa78305 Author: Alan Garny Date: Tue Apr 9 10:43:39 2019 +1200 Replaced some `enum`s with some `enum class`s. commit c70646db8c0ed91fd29610308431c84a4f8d97cb Author: Alan Garny Date: Tue Apr 9 10:36:00 2019 +1200 Some minor cleaning up. commit d95ff892e51a9ef539f9e0f28bd1f22670614191 Author: Alan Garny Date: Tue Apr 9 10:00:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit cd11e94df562576bd47e1532b260d653e3dd67e8 Author: Alan Garny Date: Tue Apr 9 09:50:47 2019 +1200 Replaced some `enum`s with some `enum class`s. commit ad1b5f552a47203c4a29fead9458ae6525d32d8e Author: Alan Garny Date: Tue Apr 9 09:45:56 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 15a3fb5d1d609e5d4f2f83428acd964f812b5be8 Author: Alan Garny Date: Tue Apr 9 09:41:17 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 38187d5103139d242f07b94d9e370a2a84f7f81d Author: Alan Garny Date: Tue Apr 9 09:37:56 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 667ba2abdc76d862b98c36a0a869301df2d4acd1 Author: Alan Garny Date: Tue Apr 9 08:56:43 2019 +1200 Some minor cleaning up. commit 1ce36a77e040d13057b3cd9981a525f5b6785af3 Author: Alan Garny Date: Tue Apr 9 08:55:40 2019 +1200 Replaced some `enum`s with some `enum class`s. commit fce9bea649020eefd19cd2b3aa3c73043205239a Author: Alan Garny Date: Tue Apr 9 08:28:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 50296f4414687d30fced013181d29cfacf0ed650 Author: Alan Garny Date: Tue Apr 9 08:25:48 2019 +1200 Replaced some `enum`s with some `enum class`s. commit a1a69196deed0125f87ef37a82ff820c41eada03 Author: Alan Garny Date: Tue Apr 9 08:15:33 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 68318be959f10a02ad73f2273dc0af09d24dc92e Author: Alan Garny Date: Mon Apr 8 18:06:26 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 44d334e9215670fd691fb46a3e9b2bf1702d0516 Author: Alan Garny Date: Mon Apr 8 17:35:11 2019 +1200 Replaced some `enum`s with some `enum class`s. commit deda749cb28e51e78e57b1faf132016d22f7f391 Author: Alan Garny Date: Mon Apr 8 17:27:17 2019 +1200 Replaced some `enum`s with some `enum class`s. commit 90cf7ebdd10f0f828d4f6672ad881f3326f84acd Merge: e766ebea6 f3b5d1d5e Author: Alan Garny Date: Fri Apr 5 18:47:05 2019 +1300 Some minor cleaning up. commit f3b5d1d5edf39b0d9f7d31c51c593edf6715b5dd Author: Alan Garny Date: Fri Apr 5 12:31:14 2019 +1300 Some minor cleaning up. commit 787bc2d856b88c165ab50815a76a2f0f6b4d1a1d Author: Alan Garny Date: Fri Apr 5 12:17:26 2019 +1300 Simulation Experiment view: make sure that SED-ML-related messages are properly formatted. commit 76118351c43bf4a8dd00ff9aa79ce7fe41fc86c0 Author: Alan Garny Date: Fri Apr 5 12:08:06 2019 +1300 SED-ML support: prevent duplicate errors from libSEDML. commit 1ddbf2c0ad12856905d4a5fdec2117dad43e4e8d Author: Alan Garny Date: Fri Apr 5 11:12:06 2019 +1300 Some minor cleaning up. commit f24ff8cff4d77af4c8b776f9de0a74e6b73649ab Author: Alan Garny Date: Fri Apr 5 11:04:40 2019 +1300 SED-ML support: improved our detection of SED-ML files. commit 526b808e3376ad4703f2e9ea143720494d3aa406 Author: Alan Garny Date: Fri Apr 5 11:02:17 2019 +1300 Simulation support: make sure that we have a runtime before doing certain things. commit e766ebea6065553b096a3e7f848746d68b9f77a2 Author: Alan Garny Date: Thu Apr 4 16:05:34 2019 +1300 Some minor cleaning up. commit 022d95b71e4c11b094309c355d1dabc57d77aaef Merge: 8a52fe433 27c4eb923 Author: Alan Garny Date: Thu Apr 4 13:05:30 2019 +1300 Some minor cleaning up. commit 27c4eb923d033b9b04438b8099df18355a46c437 Author: Alan Garny Date: Thu Apr 4 12:46:13 2019 +1300 Some minor refactoring. commit 04948005237f11f06e8a79da302e982a6029daf1 Author: Alan Garny Date: Thu Apr 4 12:45:53 2019 +1300 Some minor cleaning up. commit 400c3e389feb9c6972527a151bc9d1255a9226fc Author: Alan Garny Date: Thu Apr 4 12:45:26 2019 +1300 SED-ML support: always create an L1V3 SED-ML document. commit 2dfef31d594223e35899eaf2d820d895451774ae Author: Alan Garny Date: Thu Apr 4 12:44:22 2019 +1300 Some minor cleaning up. commit 8a52fe433d3f25ab143d884f1264f2688e1383cb Merge: f192b77d3 0fa569554 Author: Alan Garny Date: Wed Apr 3 15:52:16 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS (closes #2050). commit 0fa569554abb307982eed32fee232c6f40154f5a Author: Alan Garny Date: Wed Apr 3 15:28:57 2019 +1300 Make sure that our tests work fine on Ubuntu 18.04 LTS (#2050). commit f192b77d35bc68517ff3b79f9251e9cb6edad680 Merge: dce3cd19d bb034d545 Author: Alan Garny Date: Thu Mar 28 09:23:58 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS (closes #2050). commit bb034d545c1748326cb44895d550d25abaa26633 Author: Alan Garny Date: Thu Mar 28 08:58:38 2019 -0700 Revert "Temporarily build QScintilla and Qwt." This reverts commit 7d2677eaf67072e8f135602108e95a8e663b5e00. commit 9f8609d4b0b344a665f998a788108c1c9dbcbb0d Author: Alan Garny Date: Thu Mar 28 08:57:52 2019 -0700 Slight update to our downloads page (#2050). commit e20bd37152f9ef04a007ee2ef693d7b083b4c2a9 Author: Alan Garny Date: Thu Mar 28 08:54:53 2019 -0700 Updated Linux binary for QScintilla 2.11.1 and Qwt 6.1.4 (#2050). Fixed the RPATH value. commit 31f0a33831c4b2eb5394d72da6c8921d805f6131 Author: Alan Garny Date: Wed Mar 27 22:04:16 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 3d349857f98043b327f0f24633ed6b3deaf60efb Author: Alan Garny Date: Wed Mar 27 21:55:49 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 85b0f6896c08e31afc7ca680defdfb6c3a6ecdb3 Author: Alan Garny Date: Wed Mar 27 21:51:22 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 32155b9340e77eb7ac6fd1f4fcbe88d31d12eb54 Author: Alan Garny Date: Wed Mar 27 21:48:58 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 03dbf983f46d12f0d187635bc3204f693582a0df Author: Alan Garny Date: Wed Mar 27 21:39:39 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit dc97febb8b73fd341affcc22da8264d19eea11f9 Author: Alan Garny Date: Wed Mar 27 16:46:25 2019 -0700 Some minor cleaning up. commit 505da57e623a20dc8533801218e9361935b19c66 Author: Alan Garny Date: Wed Mar 27 16:37:57 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit fd4d12958bc486997fc68b153defeed57ef53a5d Author: Alan Garny Date: Wed Mar 27 16:30:33 2019 -0700 Fix the RPATH for QScintilla and Qwt on Linux (#2050). commit a43846777a20b08f907fc27272e77124a14ee7f9 Author: Alan Garny Date: Wed Mar 27 16:23:59 2019 -0700 Some minor cleaning up. @executable_path/../Frameworks now gets automatically added when building QScintilla and Qwt. Something clearly happened recently since we used to need to add @executable_path/../Frameworks. Maybe the new version of Qt is somehow responsible for this or maybe CMake (most likely)? Whatever the case, we must not add @executable_path/../Frameworks anymore otherwise the build fails with a message telling us that the RPATH is already set, etc. commit 3a49030cc27a538bfd12bce5b5d1af98761f289a Author: Alan Garny Date: Wed Mar 27 16:09:55 2019 -0700 CMake: refactored our code a bit so that we now have a `strip_file()` macro. Except for the packageXXX.cmake file, for which we obviously need to call `strip` directly. commit 9ecbc81605a90007ac28d2abea7152eaeb36f872 Author: Alan Garny Date: Wed Mar 27 14:40:43 2019 -0700 Some minor cleaning up. commit 86ea872e4bfb57381205265f8ea83fda3f59e0c4 Author: Alan Garny Date: Wed Mar 27 14:36:51 2019 -0700 Some minor cleaning up. commit ce7f8d899d5af0b73c03a07219ac648510089e86 Author: Alan Garny Date: Wed Mar 27 13:47:53 2019 -0700 Some minor cleaning up. commit 7d2677eaf67072e8f135602108e95a8e663b5e00 Author: Alan Garny Date: Wed Mar 27 12:04:00 2019 -0700 Temporarily build QScintilla and Qwt. commit 969e17aae29817e020c6fa0051948319c9e0b4f7 Author: Alan Garny Date: Wed Mar 27 12:03:28 2019 -0700 Linux: don't need to deploy some system libraries anymore (#2050). At least, not for Ubuntu 18.04 LTS. Will be interesting to see whether it still works with say Ubuntu 18.10 and the forthcoming 19.04. commit 702255556524c7fbc6adff06aae88701076a451d Author: Alan Garny Date: Wed Mar 27 10:29:55 2019 -0700 Linux: make sure that all our binary files use `RPATH` and not `RUNPATH` (#2050). commit 371f71886cf7e0e5a6e09d5aee31a2a8b968fd22 Author: Alan Garny Date: Wed Mar 27 09:56:39 2019 -0700 Some minor cleaning up. commit a2265fa0616e205621b7081c0f2d3217aa37de4e Author: Alan Garny Date: Mon Mar 25 20:27:29 2019 -0700 Linux: upgraded our minimum requirement to Ubuntu 18.04 LTS (#2050). commit 8b44c068093cb20b65df526a02f0e9e4abebea49 Author: Alan Garny Date: Mon Mar 25 15:05:55 2019 -0700 Some minor cleaning up. commit 6bbafc4a06b9bcc32e7eed08f79fb2c566b5d612 Author: Alan Garny Date: Mon Mar 25 14:58:28 2019 -0700 Slight update to our supported platforms (#2050). commit dce3cd19d8748a095965fb34accd6917113f5e0f Merge: 7b4de3b52 1ad0e1143 Author: Alan Garny Date: Sun Mar 24 09:11:55 2019 +1300 libSEDML: removed our use of an explicit release tag (#2042). commit 1ad0e1143765b6cf53edd5cb47dc691e019c520e Author: Alan Garny Date: Sun Mar 24 08:49:39 2019 +1300 libSEDML: removed our use of an explicit release tag (#2042). The release tag used to be `0.4.4`, which required our use of an explicit release tag since by default we would expect the release tag to be `v0.4.4`. However, a new `v0.4.4` release tag has been created on GitHub, hence now we don’t need to specify an explicit release tag. commit 7b4de3b526cd22fde89f7c2b60d805ef99010af8 Merge: c34e93562 f5beb289a Author: Alan Garny Date: Sat Mar 23 16:25:21 2019 +1300 libSEDML: upgraded to version 0.4.4 (closes #2042). commit f5beb289a5f0bf69263a9b2d5757803f1753d74b Author: Alan Garny Date: Sat Mar 23 16:05:53 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 315132b2e3774f1f0bf78c994f74790c3fc3a383 Author: Alan Garny Date: Sat Mar 23 15:54:48 2019 +1300 Slight update to our downloads page (#2042). commit d6c53abcf57aef7ca5fb046e85a35a4d825862ca Author: Alan Garny Date: Sat Mar 23 15:51:27 2019 +1300 Revert "Only build libSEDML (#2042)." This reverts commit 4ccd3818298e389d1348bf529307830adbc52cdb. commit 5e92806443cc46a1ac998d7a8234111b6ad52386 Author: Alan Garny Date: Sat Mar 23 15:51:09 2019 +1300 libSEDML: binaries for version 0.4.4 (#2042). commit efe1e517707cf66587a133c2fbec26d544a8f97c Author: Alan Garny Date: Sat Mar 23 15:41:10 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 5da0f1e7b85f16985f414ee15bb10d871b3cd676 Author: Alan Garny Date: Sat Mar 23 15:39:24 2019 +1300 libSEDML: upgraded to version 0.4.4 (#2042). commit 4ccd3818298e389d1348bf529307830adbc52cdb Author: Alan Garny Date: Sat Mar 23 15:38:58 2019 +1300 Only build libSEDML (#2042). commit c34e93562662cd8a2fcdfdd338a8cdf816e0406e Merge: 864d8c572 3c48dd0d3 Author: Alan Garny Date: Sat Mar 23 14:42:09 2019 +1300 LLVM+Clang: upgraded to version 8.0.0 (closes #2040). commit 3c48dd0d3db35d9058d85a436f1ef347b3aa8494 Author: Alan Garny Date: Sat Mar 23 13:07:54 2019 +1300 Revert "Only build our LLVMClang plugin (#2040)." This reverts commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9. commit 95927f49164b008167ac817043d6a42eb4a423bb Author: Alan Garny Date: Sat Mar 23 13:07:32 2019 +1300 LLVMClang: binaries for version 8.0.0 (#2040). commit 4bf151bce9bf7dd08464022916033fe94ea3fbc9 Author: Alan Garny Date: Sat Mar 23 09:48:27 2019 +1300 Only build our LLVMClang plugin (#2040). commit e832f9d439dc2e3acd3ab4aa36ad62981908897a Author: Alan Garny Date: Sat Mar 23 09:42:55 2019 +1300 Compiler engine: simplified our compileCode() method following changes to LLVM+Clang. commit f479842519c7c16c964daac6723c1543c0865ecf Author: Alan Garny Date: Sat Mar 23 01:19:24 2019 +1300 Slight update to our downloads page (#2040). commit 2d923563e9ca41c05123fdabeb8c761801c01c1e Author: Alan Garny Date: Sat Mar 23 01:16:37 2019 +1300 Revert "Only build our LLVMClang plugin (#2040)." This reverts commit 624cd66011981e0631d924c3174948aff5bd3cc5. commit dd843acc25d3d778e1cb682a2a66db1e792c8072 Author: Alan Garny Date: Sat Mar 23 01:16:19 2019 +1300 LLVMClang: binaries for version 8.0.0 (#2040). commit c7f5858a89a19768d843df09ceb4e9429333b0c9 Author: Alan Garny Date: Sat Mar 23 00:55:06 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit 28da7961de0e5c60e29efc7d256c397248963cab Merge: 0436cf3b3 864d8c572 Author: Alan Garny Date: Fri Mar 22 16:30:52 2019 +1300 Merge branch 'master' into issue2040. commit 864d8c572909a79304eb76863a44b89b8a2fc79c Merge: a87719042 75f3d7fae Author: Alan Garny Date: Fri Mar 22 16:29:58 2019 +1300 Mesa: upgraded to version 18.3.5 (closes #2044). commit 75f3d7fae27330ea72232a648b3839e362e578bf Author: Alan Garny Date: Fri Mar 22 16:01:01 2019 +1300 Revert "Only build the Mesa library (#2044)." This reverts commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af. commit 958e8149e7a4d09e1787209038ce3c6db1a07eb3 Author: Alan Garny Date: Fri Mar 22 15:58:06 2019 +1300 Mesa: binary for version 18.3.5 (#2044). commit c4eb44a0adb0dd6e7768f5bc451c1b16c5522ac3 Author: Alan Garny Date: Fri Mar 22 15:56:34 2019 +1300 Slight update to our downloads page (#2044). commit 94f74b09f89d47d3a69e3dce39078c4f2ac2c464 Author: Alan Garny Date: Fri Mar 22 15:48:08 2019 +1300 Mesa: upgraded to version 18.3.5 (#2044). commit ad7f7ed45ef1668c2d6b728e36efaadd2ae900af Author: Alan Garny Date: Fri Mar 22 15:47:14 2019 +1300 Only build the Mesa library (#2044). commit 0436cf3b3214d55b4f342d2f7f2491e31b8f93ea Merge: 93d7dad79 a87719042 Author: Alan Garny Date: Fri Mar 22 13:33:49 2019 +1300 Merge branch 'master' into issue2040. commit a87719042aced850544721fea356f1c7182a8a7c Merge: 3f7e13283 e5da897cd Author: Alan Garny Date: Fri Mar 22 13:32:24 2019 +1300 General: now rely on Visual Studio 2017 Update 9 to build OpenCOR on Windows (closes #2041). commit e5da897cdebbdbc2f36b84be3821dd42df3fdf58 Author: Alan Garny Date: Fri Mar 22 09:52:15 2019 +1300 Some minor cleaning up. commit 60cc12828d3d93a45b3a7de4d6026ed7a2f94a3f Author: Alan Garny Date: Fri Mar 22 09:49:20 2019 +1300 Slight update to our downloads pages (#2041). commit dc312ac6ef957de1eb1bc7780a7cc9fd0038f082 Author: Alan Garny Date: Fri Mar 22 09:41:48 2019 +1300 Only deploy the DLLs we (may) really need (#2041). commit 8ac92b5665cac03b528f4af8f8fdb45f62667901 Author: Alan Garny Date: Fri Mar 22 09:04:29 2019 +1300 Some minor cleaning up. commit 87db62bc22711938d9c26d13464be3cd0333cd84 Author: Alan Garny Date: Thu Mar 21 18:02:52 2019 +1300 Windows: update the path to VC++ DLLs (#2041). commit 93d7dad797180e143c941f729e0fb763f400ec51 Author: Alan Garny Date: Thu Mar 21 17:24:07 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). The idea is to use VS 2017 (see issue #2041), so no need to allow the old toolchain. commit 86e5cfc589aab9af2f63382dc903f7fa75b753fc Author: Alan Garny Date: Thu Mar 21 17:18:11 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit a7c1a3b8bc4ee54d0a6d584f77e693d1475d9f1e Author: Alan Garny Date: Thu Mar 21 17:14:10 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 (#2041). commit b0b40a92df8a96b37a0512415c7f51b0ae395583 Author: Alan Garny Date: Thu Mar 21 16:57:30 2019 +1300 Windows: make sure that we are using Visual Studio 2017 Update 9 (#2041). commit a9e29318bee0187a907a10f9afd7f2578773bce6 Author: Alan Garny Date: Thu Mar 21 16:52:11 2019 +1300 Windows: use Visual Studio 2017 to build OpenCOR (#2041). commit e34e8d145a03f6536ff0c677193b3e040c23ada9 Author: Alan Garny Date: Thu Mar 21 12:47:06 2019 +1300 LLVMClang: only build/enable what we want/need (#2040). commit 2b6d3f0e5ae4e324d50efb3b566d034177c4c504 Author: Alan Garny Date: Thu Mar 21 08:51:05 2019 +1300 LLVMClang: allow the (temporary) use of MSVC 2015 on Windows (#2040). commit f42729c0af70d3572c2b8a2c7be682d1cd7d8cfd Author: Alan Garny Date: Thu Mar 21 08:14:30 2019 +1300 LLVMClang: don't include the (new) benchmarks (#2040). commit 9c724fc92c02f9c81a4b2a38b85f0518484fbb9f Author: Alan Garny Date: Thu Mar 21 07:47:33 2019 +1300 LLVMClang: upgrade to version 8.0.0 (#2040). commit 624cd66011981e0631d924c3174948aff5bd3cc5 Author: Alan Garny Date: Thu Mar 21 07:44:14 2019 +1300 Only build our LLVMClang plugin (#2040). commit 3f7e13283ba1b28ca5364db0df61fde8245f0258 Merge: 5af53d478 7da2eff20 Author: Alan Garny Date: Tue Mar 19 19:08:36 2019 +1300 Some minor cleaning up. commit 7da2eff201081142d312cc0e69daa744c666945d Author: Alan Garny Date: Tue Mar 19 18:51:31 2019 +1300 Some minor cleaning up. commit 5af53d4788963c5cca83fc1dc8c96bc363f319fc Merge: 21a803c33 6192775a3 Author: Alan Garny Date: Fri Mar 15 11:12:08 2019 +1300 Some minor cleaning up. commit 6192775a31ff9e065006e2b9ca0a01f679cce8e6 Author: Alan Garny Date: Fri Mar 15 10:51:22 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 79d30c7d1671058955bcfe11f4bb7f2d098fef2d Author: Alan Garny Date: Fri Mar 15 10:26:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit c49c129bddd93a8c8175134f7d56be4d92ad75a2 Author: Alan Garny Date: Fri Mar 15 10:25:35 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a17d71cafcb8994005ca020ee84d5c7e8d1c201d Author: Alan Garny Date: Fri Mar 15 10:24:37 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91dc695c550feaabacb7c0554b8dbcc48ef2a94c Author: Alan Garny Date: Fri Mar 15 10:23:08 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 83d4ed8b14d4bccf9a4bf076a409ff4703deb0c4 Author: Alan Garny Date: Fri Mar 15 10:22:11 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit a1d756af84d4c81a498c347d67016dd6d714f01d Author: Alan Garny Date: Fri Mar 15 10:19:55 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b660a9d311abf1505203e4ffde52be2fa5cdb6b3 Author: Alan Garny Date: Fri Mar 15 10:16:34 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit b7be47b379e48b76dc865741d0d44c44056d52f9 Author: Alan Garny Date: Fri Mar 15 10:15:49 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 91a2750d1fea075a5aab4ec1e19c7897ee13b89a Author: Alan Garny Date: Fri Mar 15 10:14:48 2019 +1300 Explicitly specify the UTF-8 encoding in our CellML files. commit 24b89a8d979f5bbcc3c5c03ae655a0abaa4c8d6e Author: Alan Garny Date: Fri Mar 15 10:07:19 2019 +1300 Make sure that a QDomDocument specifies the encoding when getting serialised. commit a65ef0fdedabf0963072f5f222f17b87743b5ece Author: Alan Garny Date: Fri Mar 15 09:30:18 2019 +1300 Some minor cleaning up with regards to our default CellML and SED-ML files. commit 21a803c33683714fa39fc8ce6137a8bbf5c12712 Merge: 4a4987575 47467fb4e Author: Alan Garny Date: Thu Mar 14 17:27:05 2019 +1300 Some minor cleaning up. commit 47467fb4e6b4d578a99e5df94490f2ff1dcce20d Author: Alan Garny Date: Thu Mar 14 17:08:57 2019 +1300 Some minor cleaning up. commit 05da054a8fd4f656e22e0eb8a30e6bedd81d575c Author: Alan Garny Date: Thu Mar 14 16:24:52 2019 +1300 Some minor cleaning up. commit 4a4987575047c8a0ddbecf2c8cf327841062155b Merge: daca9bdf6 eafd51625 Author: Alan Garny Date: Thu Mar 14 15:37:08 2019 +1300 Always pass QDomElement objects by reference. commit eafd516257797b521cf0688da3217ff7853bb5d7 Author: Alan Garny Date: Thu Mar 14 14:58:35 2019 +1300 Some minor cleaning up. commit 2966200622a775480dd64870e5eb73adb659fcda Author: Alan Garny Date: Thu Mar 14 14:26:26 2019 +1300 Always pass QDomElement objects by reference. This adds a bit more code, but it prevents shallow copies, so it ought to be slightly faster, which cannot be a bad thing. commit daca9bdf6da90b83721e322124541f2be8420199 Merge: fe6ca4e69 33e3d9c72 Author: Alan Garny Date: Thu Mar 7 19:16:11 2019 +1300 New snapshot. commit 33e3d9c72d810d561da8dcde07646920d38f1be5 Author: Alan Garny Date: Thu Mar 7 18:58:42 2019 +1300 New snapshot. commit fe6ca4e69aa17272617ace4ad0f7aaeb581d3c4f Merge: 5b2db996b 469102545 Author: Alan Garny Date: Thu Mar 7 18:57:08 2019 +1300 General: OpenCOR's geometry is now properly restored on macOS when there is at least one remote file (closes #2030). commit 46910254564b39be76235b6d4037a0e0f50364ce Author: Alan Garny Date: Thu Mar 7 18:37:44 2019 +1300 Slight update to our downloads page (#2030). commit 8c60628a51a77d9b9e04f993a75631117d31c31d Author: Alan Garny Date: Thu Mar 7 18:34:34 2019 +1300 General: OpenCOR's geometry is now properly restored on macOS when there is at least one remote file (#2030). commit 59ae8a04682b1b0740db223b6eb90c212726476b Author: Alan Garny Date: Thu Mar 7 17:57:20 2019 +1300 Some minor cleaning up. commit 5b2db996bbf2fe8393fc1bab04219908aae45495 Merge: 959737424 a914ece78 Author: Alan Garny Date: Thu Mar 7 17:28:38 2019 +1300 Merge pull request #2033 from agarny/issue2032 PMR Workspaces window: make sure that a folder is writable (closes #2032). commit a914ece785070b7ae1f6062b51973dfddd8d6167 Author: Alan Garny Date: Thu Mar 7 16:07:51 2019 +1300 Slight update to our downloads page (#2032). commit 6f6a4b43bd0be922d0aab73631dde13d5f29619f Author: Alan Garny Date: Thu Mar 7 16:00:37 2019 +1300 Have isDirectory() and isEmptyDirectory() check that a directory is writable (#2032). commit 6cbea0850cdc72d21d68258d07f7fe3c8a73c1aa Author: Alan Garny Date: Thu Mar 7 15:21:32 2019 +1300 Some minor cleaning up. commit 833670fa8e2523904fd284ae541a7e6135c6158e Author: Alan Garny Date: Thu Mar 7 15:20:51 2019 +1300 Let people know if we chose a folder that is not writable (#2032). commit f347dff49b49cb69d3151c47a1a28744e788a09f Author: Alan Garny Date: Thu Mar 7 14:03:42 2019 +1300 Have isDirectory() and isEmptyDirectory() check that a directory is writable (#2032). commit 95973742412c2cab506acd3be1ac06823127856e Merge: 7611fbcc8 5933f993e Author: Alan Garny Date: Thu Mar 7 11:42:25 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files (closes #2028). commit 5933f993eadd074afeededecd11039e17d435c2e Author: Alan Garny Date: Thu Mar 7 10:01:09 2019 +1300 Slight update to our downloads page (#2028). commit deb7e900282fa1a0ce51c111cab833014e79721e Author: Alan Garny Date: Thu Mar 7 09:59:57 2019 +1300 Simulation Experiment view: properly handle the import of the same data in different files (#2028). commit 7611fbcc8bd0674d008bab856322dec1c0c20825 Merge: a870b10c9 7d58dbac9 Author: Alan Garny Date: Thu Mar 7 09:28:04 2019 +1300 Some minor cleaning up. commit 7d58dbac9483f053a27caf907fd54adb728e7487 Author: Alan Garny Date: Thu Mar 7 08:57:12 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. That’s because we disable OpenCOR (when downloading a remote file), meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit aba3efab3839693f8fb0fc229546d6c4e9b0a7c9 Author: Alan Garny Date: Thu Mar 7 08:56:41 2019 +1300 Revert "Graph Panel widget: use original colours only if they have been set." This reverts commit 5059b54eb4859404936fdf2a25c70b2d4a11594b. commit 5059b54eb4859404936fdf2a25c70b2d4a11594b Author: Alan Garny Date: Thu Mar 7 08:55:23 2019 +1300 Graph Panel widget: use original colours only if they have been set. Indeed, when you start OpenCOR with a remote SED-ML file / COMBINE archive previously opened, then its graph panels will all be black. That’s because we disable OpenCOR (when downloading a remote file), meaning that its graph panels are disabled and then become enabled, but its original colours were never saved in the first place, hence everything is black indeed. commit 34df20bea38cb1e80e88c7274c0514d5283d234b Author: Alan Garny Date: Thu Mar 7 08:52:04 2019 +1300 SynchronousFileDownloader class: fixed a small memory leak. commit f11ff0cf8feb276a84cc9b2575940d74b2e6f922 Author: Alan Garny Date: Thu Mar 7 08:51:32 2019 +1300 Some minor cleaning up. commit b9791c378413546fa822498051d1c3fdfc38ca5a Author: Alan Garny Date: Thu Mar 7 08:49:56 2019 +1300 Some minor cleaning up. commit 7a8ddc9989d538df97a7e44bc485cabccb0529ba Author: Alan Garny Date: Thu Mar 7 08:49:40 2019 +1300 Some minor cleaning up. commit a870b10c95c5958ff0aa3210d5923176e767d427 Merge: 53d60e0ac 76caf82b9 Author: Alan Garny Date: Tue Mar 5 17:31:37 2019 +1300 New snapshot. commit 76caf82b96cf865b3eab27b885a66bc9bf51c4ac Merge: d6a8690fe 53d60e0ac Author: Alan Garny Date: Tue Mar 5 17:08:15 2019 +1300 Merge remote-tracking branch 'opencor/master'. commit 53d60e0ac2dea4d93de30dae85808f3dfd33ba44 Merge: 60c09567a f92a2e0c8 Author: Alan Garny Date: Tue Mar 5 17:07:59 2019 +1300 Some minor cleaning up. commit d6a8690feaa4b08de969021d2babaf90d3183b98 Author: Alan Garny Date: Tue Mar 5 16:57:28 2019 +1300 New snapshot. commit f92a2e0c88cf5864155648a5fba94516c067945e Author: Alan Garny Date: Tue Mar 5 16:40:19 2019 +1300 Some minor cleaning up. commit e53cf8af1779784fc712e99333dc678e95ef748f Author: Alan Garny Date: Tue Mar 5 15:56:30 2019 +1300 Some minor cleaning up. commit 7890a50c89d9cb722bd4d539bb48cc73cf31fbfa Author: Alan Garny Date: Tue Mar 5 15:37:44 2019 +1300 PMR support: reset the contents of our web browser when reusing it. commit ec7dbd8759d7184e37ae4ed5b1f174829c461edf Author: Alan Garny Date: Tue Mar 5 15:29:08 2019 +1300 Some minor cleaning up. Put this piece of code where it used to be since it used to be working fine that way. commit 4e6e4308efbf77af2ca4bef1f3709453dade9222 Author: Alan Garny Date: Tue Mar 5 15:16:43 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct (and applied when we were connected to PMR). Yet, it's better to set mInitialized in PmrWorkspacesWindowWindow::loadSettings() and check for it in PmrWorkspacesWindowWindow::busy(). commit 41f6d7f27322787c87f8c9d4b84851848ee191c1 Author: Alan Garny Date: Tue Mar 5 15:12:03 2019 +1300 Some minor cleaning up. commit 6722c611720ee301282d707f55ee7cff467538f9 Author: Alan Garny Date: Tue Mar 5 15:04:31 2019 +1300 Some minor cleaning up. commit 23ab11066bc9bfca9fc2274f604471e44c2d4ac9 Author: Alan Garny Date: Tue Mar 5 15:04:21 2019 +1300 Some minor cleaning up. Put back that piece of code where it used to be. The reason for which it was moved was correct (and applied when we were connected to PMR). Yet, it's better to set mInitialized in PmrWorkspacesWindowWindow::loadSettings() and check for it in PmrWorkspacesWindowWindow::busy(). commit 60c09567a028e54517c6480866562eec0767b764 Merge: 617817b71 e19a83854 Author: Alan Garny Date: Mon Mar 4 17:44:37 2019 +1300 Simulation Experiment view: make some widgets look properly disabled when they are (closes #2022). commit e19a83854690cfa572fd98cc2ffa5387c7e3a592 Author: Alan Garny Date: Mon Mar 4 17:22:23 2019 +1300 Slight update to our downloads page (#2022). commit 3550be10f6fbb4ff560c06e0e831b007ccf3a605 Author: Alan Garny Date: Mon Mar 4 17:11:09 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 33e6a5e2a550c857051a2cad382d6b8184793c45 Author: Alan Garny Date: Mon Mar 4 16:47:21 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 64191f6a3d7e028d76b7fce124c1c0a87e3a8684 Author: Alan Garny Date: Mon Mar 4 16:40:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 8c9c7c27238b27ec528dc7c382553d082c97676f Author: Alan Garny Date: Mon Mar 4 15:39:02 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit cfa0c36de1197a22ecf20ed85c48d1be19b545bb Author: Alan Garny Date: Mon Mar 4 15:22:11 2019 +1300 Some minor cleaning up. commit 8c42a54ac3ed1068a425f417b5790fa900fb92e3 Author: Alan Garny Date: Mon Mar 4 14:12:42 2019 +1300 Some minor cleaning up. commit 7e707cdd1165049bf9d4a1d17924cfdba0694fe8 Author: Alan Garny Date: Mon Mar 4 13:24:20 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 13bb03286628aad9cbacc5844d612483b76c3975 Author: Alan Garny Date: Mon Mar 4 13:20:18 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 61e9db65f7111d1eac1354a987331d264ff52131 Author: Alan Garny Date: Mon Mar 4 13:16:25 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit 71f4d0ab6733712f610008ca50a26cf153e46eaf Author: Alan Garny Date: Mon Mar 4 13:15:51 2019 +1300 Graph Panel widget: some work on getting everything look fully disabled when it should be (#2022). commit ecd372efe6183bbe5c3d44defd2a8934c670bac8 Author: Alan Garny Date: Mon Mar 4 12:44:28 2019 +1300 Some minor cleaning up. commit c0b7cb0046907e5397979c524fdd9e152460697d Author: Alan Garny Date: Mon Mar 4 12:22:50 2019 +1300 Some minor cleaning up. commit e94e76f04ada110f135e17c7a151de7c3a71fa1c Author: Alan Garny Date: Mon Mar 4 12:22:34 2019 +1300 Graph Panel widget: the marker now looks fully disabled when it should be (#2022). commit f1925939eeb0c49e413c64f9b3313195fbf2c30e Author: Alan Garny Date: Mon Mar 4 11:22:49 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be (#2022). commit 603064c85cd2c25fc69325069434630f430e06df Author: Alan Garny Date: Mon Mar 4 10:46:31 2019 +1300 Simulation Experiment view: the output widget now looks fully disabled when it should be (#2022). commit 617817b71d054ebf9b9e058ee5b1b1a89200ad20 Merge: ac9808fee b992c92b0 Author: Alan Garny Date: Mon Mar 4 09:40:11 2019 +1300 CSV data store: improved our detection of CSV files (closes #2019). commit b992c92b06d9c314213005759736942844b4664b Author: Alan Garny Date: Mon Mar 4 09:19:03 2019 +1300 CSV data store: improved our detection of CSV files (#2019). commit ac9808feed93bd8662f4de809c7926609d27b2cf Merge: cd842ab28 2c2b44813 Author: Alan Garny Date: Sat Mar 2 19:44:40 2019 +1300 CSV data store: improved our detection of CSV files (closes #2019). commit 2c2b4481305a4edb33be583ca55a1254443a51bb Author: Alan Garny Date: Sat Mar 2 19:25:54 2019 +1300 Slight update to our downloads page (#2019). commit 7323b57c8e5bbfe3ed25a67e8cc925fd67b1773f Author: Alan Garny Date: Sat Mar 2 19:12:01 2019 +1300 CSV data store: improved our detection of CSV files (#2019). commit 404b67f099065250d1c9e83b7ba7ad29b8ba8eb2 Author: Alan Garny Date: Sat Mar 2 19:09:47 2019 +1300 Some minor cleaning up. commit cd842ab285cea17bc52f89b62642ebbb98395a3e Merge: 74a9bfc5c af5468e74 Author: Alan Garny Date: Sat Mar 2 17:28:19 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit af5468e74615c9405c398c70de71533a947884a1 Author: Alan Garny Date: Sat Mar 2 16:33:08 2019 +1300 ZIP support: updated the code for the Qt-side of things. commit 74a9bfc5c494202ef3590286b5c1860785daa6ad Merge: adf051735 2e8bec830 Author: Alan Garny Date: Fri Mar 1 19:45:01 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit 47481028594fa6be438298267d21ff57aaaa902a Merge: a7a4da910 adf051735 Author: Alan Garny Date: Fri Mar 1 18:40:31 2019 +1300 Merge branch 'master' into issue1801. commit 2e8bec830409b7a3bf37ab777e774de133762966 Author: Alan Garny Date: Fri Mar 1 18:17:52 2019 +1300 Common widget: make sure that we can see the final state of a progress busy widget. commit adf051735fce48f388041c8b0b6cded979b72666 Merge: 7f64eed2e 9eec930ed Author: Alan Garny Date: Fri Mar 1 16:09:41 2019 +1300 Some minor cleaning up. commit 9eec930ed78cbaf1e48d67069ddb283fa53445f5 Author: Alan Garny Date: Fri Mar 1 15:38:42 2019 +1300 Simulation Experiment view: make sure that we retrieve the value of a list property as a string. Indeed, this is what our solvers need to set themselves… See CvodeSolver::initialize() for example… commit c6ad1fbba98500c6ab043a81094868be62776ac1 Author: Alan Garny Date: Fri Mar 1 15:23:43 2019 +1300 Some minor cleaning up. commit 3f71cd67354afe9f7330acc335f1fe0bd4e370b5 Author: Alan Garny Date: Fri Mar 1 14:56:34 2019 +1300 Some minor cleaning up. commit 7f64eed2e88bdffd98c85b5dc0d364a5ff3288b9 Merge: 54a869e94 43fcc06ab Author: Alan Garny Date: Fri Mar 1 09:51:00 2019 +1300 KaTeX: upgraded to version 0.10.1 (closes #2014). commit 43fcc06ab03aaaac4950b71713438839a7320f52 Author: Alan Garny Date: Fri Mar 1 09:30:56 2019 +1300 Slight update to our downloads page (#2014). commit 54a869e94f901b7e085669c2483332cde7721641 Merge: 5911d5960 37f59d2ee Author: Alan Garny Date: Thu Feb 28 18:46:08 2019 +1300 URI scheme: added the `importFile` and `importFiles` commands (closes #2000). commit 37f59d2ee9330bd56b3f48da86a1018fe593f95c Author: Alan Garny Date: Thu Feb 28 18:28:36 2019 +1300 Some minor cleaning up. commit c31262f28aa393d122b089de7691daa1ab88f7c2 Author: Alan Garny Date: Thu Feb 28 18:17:16 2019 +1300 Slight update to our downloads page (#2000). commit be5315f77c97bce23b633cbbc352e730278815a6 Author: Alan Garny Date: Thu Feb 28 17:56:54 2019 +1300 Some minor cleaning up. commit fdc721d25c5d7165a8e61de963292f9fc8929c0b Author: Alan Garny Date: Thu Feb 28 17:49:52 2019 +1300 Can now import a remote file / some remote files (#2000). commit 90727ec533142c6653c431f410649a7224170ae1 Author: Alan Garny Date: Thu Feb 28 16:41:06 2019 +1300 Some minor cleaning up. commit 91aacd4ceafcc1ddc887a761b4d636325b1cd311 Merge: 6f783a9e1 d2dc0c815 Author: Alan Garny Date: Thu Feb 28 14:37:30 2019 +1300 Merge remote-tracking branch 'origin/issue2000' into issue2000 commit 6f783a9e10829dd18caaa7c25044688906910c4d Merge: f8028a73a 5911d5960 Author: Alan Garny Date: Thu Feb 28 14:35:11 2019 +1300 Merge branch 'master' into issue2000. commit 5911d5960d6cbf51dfaff38487aa24c513afeaa5 Merge: dba00265b 21e33f9d1 Author: Alan Garny Date: Thu Feb 28 14:16:42 2019 +1300 Some minor cleaning up. commit d2dc0c8152abc4beeb114ac3a598088b4bf0f5cc Author: Alan Garny Date: Thu Feb 28 11:50:43 2019 +1300 Some minor cleaning up. commit 21e33f9d18da17a8578ee8ef1eabaa1dc1e50d6f Author: Alan Garny Date: Thu Feb 28 11:49:41 2019 +1300 Simulation Experiment view: import files one after the other. Until now, we were importing in parallel, but this won’t work for issue #2000, so now do it one after the other. commit 97f19824dad16213d54f64c377a605cae8ebbf2f Author: Alan Garny Date: Thu Feb 28 11:20:12 2019 +1300 Some minor cleaning up. commit d072576e5ee90da1d9570606979b5c47934f249e Author: Alan Garny Date: Thu Feb 28 10:59:10 2019 +1300 Some minor cleaning up. commit 06c611a0ec4399d16ad348d29843e418fdaf0f94 Author: Alan Garny Date: Thu Feb 28 10:58:53 2019 +1300 Some minor cleaning up. commit f4dc8519a21a41e6f07b26e01a422908173d1183 Author: Alan Garny Date: Thu Feb 28 10:58:37 2019 +1300 Some minor cleaning up. commit 563eaa790882ae359243f411df7ae136c3a66ff2 Author: Alan Garny Date: Thu Feb 28 10:58:14 2019 +1300 Some minor cleaning up. commit 3739957d3fc6ff519445472fe0f4fdcd45b8f37a Author: Alan Garny Date: Thu Feb 28 10:14:06 2019 +1300 Some minor cleaning up. mViews is not used as such, so no point in keeping it. As a result, we can also remove viewKey(). commit d25bf0fcd6879d288a71f049497d0966ec856d30 Author: Alan Garny Date: Thu Feb 28 10:13:12 2019 +1300 Some minor cleaning up. commit 5ed9b0e529d21fa62928bb0d968358832d61f751 Author: Alan Garny Date: Thu Feb 28 10:12:52 2019 +1300 Some minor cleaning up. commit 9e8727e9fc2e09001c70dcc845c2095ed0111eaf Author: Alan Garny Date: Thu Feb 28 10:12:31 2019 +1300 Some minor cleaning up. commit 6609d5537ee0a8d782f41e5e243922ec9b472821 Author: Alan Garny Date: Thu Feb 28 10:09:08 2019 +1300 Some minor cleaning up. commit 00a16b11b28692a784063774118ca91999dda88c Author: Alan Garny Date: Thu Feb 28 10:08:54 2019 +1300 Core interface: renamed handleArguments() to openFile(). Indeed, to handle arguments effectively results into opening files, so… commit f8028a73a7e3951e6732b51d0ed3db600d0a431a Merge: 0744b742c dba00265b Author: Alan Garny Date: Wed Feb 27 18:33:24 2019 +1300 Merge branch 'master' into issue2000. commit dba00265b5b0ef59a27fe764d1705504c88df24c Merge: fbd7917b6 235a1d4bc Author: Alan Garny Date: Wed Feb 27 18:32:39 2019 +1300 OpenSSL: upgraded to version 1.0.2r (closes #2009). commit 235a1d4bc2ddf873c6c550fbd0d3247d5033e748 Author: Alan Garny Date: Wed Feb 27 18:16:07 2019 +1300 Slight update to our downloads page (#2009). commit 4b76ebc0817b8b7862f064c464d711d5b6d02dce Author: Alan Garny Date: Wed Feb 27 18:15:00 2019 +1300 OpenSSL: binaries for version 1.0.2r (#2009). commit 43a5dc27627856d57d9b5d3571e28bb7245bdc39 Author: Alan Garny Date: Wed Feb 27 18:01:13 2019 +1300 Revert "Only build OpenSSL (#2009)." This reverts commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd. commit d3c361c6a7e99d39ee96f2123ce7cfba80bfa1fa Author: Alan Garny Date: Wed Feb 27 17:43:57 2019 +1300 OpenSSL: upgraded to version 1.0.2r (#2009). commit b4a0981bfc2d6ee19e7bdcc4031e5afd60bb63fd Author: Alan Garny Date: Wed Feb 27 17:43:04 2019 +1300 Only build OpenSSL (#2009). commit 0744b742cdf3abf4f2749d496cbb39619099d9b0 Author: Alan Garny Date: Wed Feb 27 17:31:51 2019 +1300 Merge branch 'master' into issue2000. commit 5341b55f5f516c52dd19ab0fd0fba6b127dfaccd Merge: 412a9cf17 fbd7917b6 Author: Alan Garny Date: Wed Feb 27 17:25:50 2019 +1300 Merge branch 'master' into issue2000. commit fbd7917b6c59d3c56456b5fce6e9a9aaa32ea995 Merge: ed60768e0 15c19df28 Author: Alan Garny Date: Wed Feb 27 17:07:33 2019 +1300 A lot of (minor) cleaning up. commit 15c19df2814ef19b7c54f5b32c1f65add7ee5e46 Author: Alan Garny Date: Wed Feb 27 16:31:06 2019 +1300 Some minor cleaning up. commit c186ee7a4ba8e3e1ad8f33b828af9aafdc85e456 Author: Alan Garny Date: Wed Feb 27 16:08:58 2019 +1300 Some minor cleaning up. commit 3e2057ff0e06499165591dd46b8a01dc0618f9c3 Author: Alan Garny Date: Wed Feb 27 16:00:22 2019 +1300 Some minor cleaning up. commit 33b15170900a97299cab6ee35e1cdc4e5c96bbe6 Author: Alan Garny Date: Wed Feb 27 15:42:37 2019 +1300 Some minor cleaning up. Finally able to minimise our Dialog class to the bare minimum (now that all our Dialog-derived classes are doing things right with regards to QSettings)! commit dfd31d75982e3aea0f3fb02394098c5070aa835a Author: Alan Garny Date: Wed Feb 27 15:25:17 2019 +1300 PMR support: now have a dedicated PmrWebViewerDialog class. commit d1b6d04c3f83dc824e4374c9890ffe9808a39b71 Author: Alan Garny Date: Wed Feb 27 11:01:15 2019 +1300 Core plugin: now have a dedicated RemoteFileDialog class. The idea is two-fold. First, we want to be able to reuse that dialog (e.g. in issue #2000) and, second, we want to improve our use of QSettings. commit 24db0db87f868dc98eb1508f5bdf1bd01b632004 Author: Alan Garny Date: Wed Feb 27 09:45:24 2019 +1300 Some minor cleaning up. commit 499b07c6531b80eb8d2bb1484a03188965d8eb93 Author: Alan Garny Date: Wed Feb 27 09:41:47 2019 +1300 Some minor cleaning up. commit 422d82c355b1be0faa91539127a9eed3093d6d85 Author: Alan Garny Date: Tue Feb 26 19:02:43 2019 +1300 PMR Workspaces window: slight improvement. commit f3cdcd55cc4ef92fdd47e4ffaa66f732dea2d0c4 Author: Alan Garny Date: Tue Feb 26 18:15:28 2019 +1300 Some minor cleaning up. commit 7e54d4dcc6ea57db2c3fc74795d3889e807373cc Author: Alan Garny Date: Tue Feb 26 18:09:50 2019 +1300 Some minor cleaning up. commit cd428fbc270ae1eaff88165d3e8c7ddb7b2bfcf2 Author: Alan Garny Date: Tue Feb 26 18:06:17 2019 +1300 Some minor cleaning up. commit 7ac677027a179c20de738eb12c54cb734548c932 Author: Alan Garny Date: Tue Feb 26 17:54:26 2019 +1300 Some minor cleaning up. commit 64c797aa3f601af616a6f8071de2b40b909b154a Author: Alan Garny Date: Tue Feb 26 17:42:04 2019 +1300 Some minor cleaning up. commit cb79808f45e17faed040b09ddbae9540acfdb407 Author: Alan Garny Date: Tue Feb 26 17:14:44 2019 +1300 Some minor cleaning up. commit 1993fae7ed798ed2d54ea1e9a2e5419f578ad5c3 Author: Alan Garny Date: Tue Feb 26 17:04:07 2019 +1300 Some minor cleaning up. commit 35b155c80a724c92f9521dee95d4854ca68a3e61 Author: Alan Garny Date: Tue Feb 26 16:32:39 2019 +1300 Slight improvement to our Plugin interface. commit a3918ae74c39c3e8b53508283de464b370633373 Author: Alan Garny Date: Tue Feb 26 16:22:05 2019 +1300 Some minor cleaning up. commit 41c4d9c5ad9222d6fa9d95f900ee17719531a170 Author: Alan Garny Date: Tue Feb 26 16:18:21 2019 +1300 Some minor cleaning up. commit ee07d92d7c0448341be760f65583a4e2980e1706 Author: Alan Garny Date: Tue Feb 26 14:18:27 2019 +1300 Some minor cleaning up. commit 43ea03aaed85164b26f32cd0af417a6e2851fb17 Author: Alan Garny Date: Tue Feb 26 14:07:13 2019 +1300 Some minor cleaning up. commit 7b68d5d29cde0773561fb09f2321b34ab2e02d6c Author: Alan Garny Date: Tue Feb 26 14:04:53 2019 +1300 Some minor cleaning up. commit ab9ffa532bc9c7764764637427a2f57b3dfaab2d Author: Alan Garny Date: Tue Feb 26 14:00:04 2019 +1300 Some minor cleaning up. commit 033db16222b18cb0224e58c5e51fa50656d4421f Author: Alan Garny Date: Tue Feb 26 13:59:47 2019 +1300 Some minor cleaning up. commit 412a9cf178e63d52c5f94c717f48113a5f5abdaa Merge: dfa64d78f ed60768e0 Author: Alan Garny Date: Tue Feb 26 09:58:10 2019 +1300 Merge branch 'master' into issue2000. commit ed60768e0087185265209baec912eab7689b18df Merge: ed512790b ea3014f56 Author: Alan Garny Date: Tue Feb 26 09:56:31 2019 +1300 Some minor cleaning up. commit ea3014f56ddad17def52b6c10a1cc013c44f0516 Author: Alan Garny Date: Tue Feb 26 09:37:54 2019 +1300 Some minor cleaning up. commit dfa64d78f289f90af5922807ea90629d1e1ab7d8 Author: Alan Garny Date: Mon Feb 25 18:42:11 2019 +1300 Some minor cleaning up. commit e5905d995f5b894c3a38ed49b9c9a6018e3e316c Author: Alan Garny Date: Mon Feb 25 18:03:08 2019 +1300 Made our Open Remote File dialog generic (#2000). commit e45beb7ab4a3f063e3ac5310d46a08f0e667fa41 Merge: 28cf9a1cd ed512790b Author: Alan Garny Date: Mon Feb 25 17:45:14 2019 +1300 Merge branch 'master' into issue2000. commit ed512790b9eb35b99aecebd1301b95479470e77f Merge: cba61001d 4483b317e Author: Alan Garny Date: Mon Feb 25 17:44:25 2019 +1300 Some minor cleaning up. commit 4483b317e74a84d8431ecd3385c3c06562e6d166 Author: Alan Garny Date: Mon Feb 25 17:22:48 2019 +1300 Some minor cleaning up. commit 28cf9a1cd39e4bc4733f1630fd1f6d002972bbe9 Merge: 282ed6610 cba61001d Author: Alan Garny Date: Mon Feb 25 17:10:42 2019 +1300 Merge branch 'master' into issue2000. commit cba61001de4ef6aee7d82093f44b6e4e07b45f7f Merge: cfe005cea e0b62a74f Author: Alan Garny Date: Mon Feb 25 17:09:17 2019 +1300 Some minor cleaning up. commit e0b62a74f494ccd48d2e574d7d3cf63aa5bee1d3 Author: Alan Garny Date: Mon Feb 25 16:51:41 2019 +1300 Some minor cleaning up. commit edb73d790facce312a5383fe1bfea4bed0e85424 Author: Alan Garny Date: Mon Feb 25 16:30:12 2019 +1300 Some minor cleaning up. commit f9b104bd6ba3a3f862f2ec68c172305c5d7a2f39 Author: Alan Garny Date: Mon Feb 25 16:17:47 2019 +1300 PMR Workspaces window: simplified our use of QSettings for our diff dialog. commit 6a5151fd68bee74420fe2b0758d695173b0c6465 Author: Alan Garny Date: Mon Feb 25 15:50:33 2019 +1300 Data store based dialogs: simplified our use of QSettings. commit 282ed6610c20f74a27b8c24422f50a7e6c2f25c5 Merge: ca5ce3fb6 cfe005cea Author: Alan Garny Date: Mon Feb 25 12:57:19 2019 +1300 Merge branch 'master' into issue2000. commit cfe005ceaa4fce8fd64746d30349521fa0fca12e Merge: 0ffded4cf 6f8812fbd Author: Alan Garny Date: Mon Feb 25 12:56:37 2019 +1300 Some minor cleaning up. commit 6f8812fbd4f9c159ba0ab1c633754ffd0d4a0297 Author: Alan Garny Date: Mon Feb 25 11:57:05 2019 +1300 BioSignalML data store: open BioSignalML files in read-only mode unless we need to create/update them. This is particularly import for BioSignalMLDataStorePlugin::isFile() since calling bsml::HDF5::Recording() in read-write mode will eventually result in the BioSignalML file being modified (when we delete the recording). In turn, this means that its SHA-1 value will be different, resulting in OpenCOR telling us that the BioSignalML file has been modified while it actually hasn’t been. commit 629cf2a6a1b76c0077654703af0f24d6af83d12d Author: Alan Garny Date: Mon Feb 25 10:46:25 2019 +1300 Some minor cleaning up. commit 2c291865e28814731f340fb78f8f83a5ff7fbc42 Author: Alan Garny Date: Mon Feb 25 10:17:51 2019 +1300 Some minor cleaning up. commit ca5ce3fb625d1034b0264c5f133d9afc41428292 Merge: 0625d3a93 0ffded4cf Author: Alan Garny Date: Sat Feb 23 10:51:05 2019 +1300 Merge branch 'master' into issue2000. commit 0ffded4cfda069e182d8eceacd63312c62e5fe73 Merge: ba9fba3ae 2d89847e8 Author: Alan Garny Date: Sat Feb 23 10:50:21 2019 +1300 Some minor cleaning up. commit 2d89847e8a89f7d4cbb9c0292cf3f347e5f84030 Author: Alan Garny Date: Sat Feb 23 10:28:46 2019 +1300 Slight improvement to our fileSha1() method. commit 9b9212ba980b978f1f380d69a0ec91df0d7d9b13 Author: Alan Garny Date: Sat Feb 23 10:13:44 2019 +1300 Slight improvement to our fileSha1() method. commit 55134b621e5d2d406fd7a04847b10f2c873d4fd8 Author: Alan Garny Date: Sat Feb 23 10:13:15 2019 +1300 Some minor cleaning up. commit 0625d3a93047cba2f9e242da771dcc713282cfd2 Merge: c34ad6165 ba9fba3ae Author: Alan Garny Date: Fri Feb 22 18:56:22 2019 +1300 Merge branch 'master' into issue2000. commit ba9fba3ae782a65359510fc4afd859d9bfbcdce3 Merge: 786b0cc42 ba207a088 Author: Alan Garny Date: Fri Feb 22 18:41:44 2019 +1300 Improved our computation of the SHA-1 value of a file. commit ba207a088dfadd3d71e56b10bf6ecaea165b10c8 Author: Alan Garny Date: Fri Feb 22 16:10:33 2019 +1300 Improved our computation of the SHA-1 value of a file. commit c34ad6165f3bbd38c5ee8da6189785ae0237758e Merge: 559e83f0a 786b0cc42 Author: Alan Garny Date: Fri Feb 22 13:15:44 2019 +1300 Merge branch 'master' into issue2000. commit 786b0cc42b023ac7a7c34c0ca93789b61166513c Merge: d1c5a06f4 aeae3b13e Author: Alan Garny Date: Fri Feb 22 13:13:19 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages (closes #2001). commit 559e83f0a677dc6845bf48beb1dffbb1a4940ec7 Author: Alan Garny Date: Fri Feb 22 13:04:32 2019 +1300 Some minor cleaning up. commit c5112eff5eaf64002a93c39d2f8df1a80108d890 Author: Alan Garny Date: Fri Feb 22 12:50:06 2019 +1300 Some minor cleaning up. commit aeae3b13ebfd5cff65edb7000f1ff9ea07c2fdae Author: Alan Garny Date: Fri Feb 22 12:30:50 2019 +1300 Some minor cleaning up. commit 0956211763398784d829ac8bda82dfe7b81158b4 Author: Alan Garny Date: Fri Feb 22 12:29:50 2019 +1300 Slight updates to our downloads and what is new pages (#2000). commit b0fb49894bc6a748ff7f76fc7111f615eab7c489 Author: Alan Garny Date: Fri Feb 22 12:19:24 2019 +1300 Simulation Experiment view: fixed an issue with a SED-ML file / COMBINE archive being considered modified after changing languages (#2001). commit ca3fcaf5b288ebd23626c4f01b2092812637ae52 Author: Alan Garny Date: Fri Feb 22 11:29:00 2019 +1300 Simulation Experiment view: now have a drop-down menu to import either local or remote data files (#2000). commit 1e77155ed3eb616498e6e00d66145ef058d65602 Author: Alan Garny Date: Fri Feb 22 10:59:48 2019 +1300 Some minor cleaning up. commit 942f8a5758deb38559fbd921630c87f0509b9239 Author: Alan Garny Date: Fri Feb 22 10:58:58 2019 +1300 Revert "Some minor cleaning up." This reverts commit cdcb637b04b137df3c4bbb9000d20e018e988159. commit cdcb637b04b137df3c4bbb9000d20e018e988159 Author: Alan Garny Date: Fri Feb 22 10:57:22 2019 +1300 Some minor cleaning up. commit e7faa3ce0595994f4ee4ca618349e066425426de Author: Alan Garny Date: Fri Feb 22 10:19:26 2019 +1300 Simulation Experiment view: don't generate a warning if we try to drop a non-data file on our view (#2000). commit b27c7fbefcf1fd96595dd873adf3a65a5a05f7f5 Author: Alan Garny Date: Thu Feb 21 13:50:31 2019 +1300 Some minor clarifications. Re the data store importer/exporter, if we were not to pass Qt::UniqueConnection, then if we want to import n signals, then the first time we would do that, we would indeed get n signals imported, but the second time we would get 2n of them, the third time 3n, etc. hence the need to pass Qt::UniqueConnection. commit ecde31758d01666dd1efa387d08fb9d3e2801b5b Author: Alan Garny Date: Thu Feb 21 08:26:13 2019 +1300 Revert "Some minor cleaning up." This reverts commit a3c5d1496cdbb83b8e89169283434cda8b18abcd. commit 3dc5e8939cd3cc4c22f1e22ed26239bdaf5a38e9 Author: Alan Garny Date: Wed Feb 20 18:53:56 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 8590dfad153b6ae66ce62b8d5a0aad296cd9fe11 Author: Alan Garny Date: Wed Feb 20 18:46:03 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 1c60f14a497cc701369eebd950f8d2b735dcb3a6 Author: Alan Garny Date: Wed Feb 20 18:36:09 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 59e5a82f4b95e99d6249ffb1435d0ca169f31484 Author: Alan Garny Date: Wed Feb 20 18:27:03 2019 +1300 Common widget: move some methods to the public slots section. commit bced9ca0274b2b49c3aca99668edcceb69f0e45f Author: Alan Garny Date: Wed Feb 20 18:12:43 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit a3c5d1496cdbb83b8e89169283434cda8b18abcd Author: Alan Garny Date: Wed Feb 20 18:12:28 2019 +1300 Some minor cleaning up. commit 7a20b5827daca511492b34c8a759665d409e1162 Author: Alan Garny Date: Wed Feb 20 17:59:49 2019 +1300 Some minor cleaning up. commit 23be390f9ab0ccdb828f8983c0adc8e913b0f536 Author: Alan Garny Date: Wed Feb 20 17:53:16 2019 +1300 Some minor cleaning up. commit 5eab6b1dc7c53f84ba882ff1c58431ea51c11631 Author: Alan Garny Date: Wed Feb 20 17:51:40 2019 +1300 Some minor cleaning up. commit 32d8e150a6806f7cb7dc69528d3e5c183ad5b91a Author: Alan Garny Date: Wed Feb 20 17:46:55 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit c4813e38c6e391095424a0bb1f795784907caa59 Author: Alan Garny Date: Wed Feb 20 16:55:38 2019 +1300 Simulation Experiment view: reworking our import method to work with one file at a time only (#2000). commit 94ce0757902dbd5f15ac637195b577b250e9826d Author: Alan Garny Date: Wed Feb 20 16:45:13 2019 +1300 Simulation Experiment: can import one file at a time using our new URI scheme `importFile` command (#2000). commit 59140f0f2ebe7fdbdb23d7379c77db9662481977 Author: Alan Garny Date: Wed Feb 20 16:42:57 2019 +1300 Some minor cleaning up. commit 17f0ed6a663468213cf4005e6e77f62f49cf3bb2 Author: Alan Garny Date: Wed Feb 20 15:14:16 2019 +1300 Central widget: ask the current view to import a given file or, failing that, open it as a normal file (#2000). commit d11773c99da31ffec6d50c1e0f1af84e9ad1ed21 Author: Alan Garny Date: Wed Feb 20 14:49:17 2019 +1300 Central widget: some minor cleaning up. We don’t make use of mViews (anymore?), so no point in still using it. Then, as a result, we don’t need viewKey() anymore either. commit 4c645beee3b3acfd983db84b41949a291e29ef28 Author: Alan Garny Date: Wed Feb 20 14:38:38 2019 +1300 Core plugin: forward to our central widget our wish to import a file (#2000). commit f38b79e1ad45182bfc182ca6bfc22172abefc972 Author: Alan Garny Date: Wed Feb 20 14:33:58 2019 +1300 Some minor cleaning up. commit a234a23bfd099fcb368679a229696f0046d57d3d Author: Alan Garny Date: Wed Feb 20 14:21:28 2019 +1300 Main window: added support for the `importFile` and `importFiles` URI scheme commands (#2000). commit 74d2f11569e16a1aba3ffec48db92feb142e5d1f Author: Alan Garny Date: Wed Feb 20 13:22:17 2019 +1300 Core interface: renamed `handleArguments()` to `openFile()` (#2000). Indeed, the only arguments that our Core plugin should handle are file names to open, so… commit b33675b6bb48803ec85c228e89b9e7b964c63145 Author: Alan Garny Date: Wed Feb 20 11:30:12 2019 +1300 Some minor cleaning up. commit 628a4ecc7a731613c2f0b1915e7ac0bcc6fae5a5 Author: Alan Garny Date: Wed Feb 20 10:25:23 2019 +1300 Some minor cleaning up. commit 2e61f6798978e6c5a9a956951c009a27debf43e6 Author: Alan Garny Date: Wed Feb 20 09:59:57 2019 +1300 File Handling interface: added a new importFile() method (#2000). commit d1c5a06f4a46b568b45889c15c99843e451b779b Merge: 104887509 1f7667da0 Author: Alan Garny Date: Tue Feb 19 20:57:59 2019 +1300 Slight update to our downloads page (#1991). commit 1f7667da0aaba974c9bf4716e6f2c98e10d35392 Author: Alan Garny Date: Tue Feb 19 19:32:10 2019 +1300 Slight update to our downloads page (#1991). commit 104887509502e54df9c163fa7cd37dadffdbd529 Merge: d1bd9cb5c 71dc6870b Author: Alan Garny Date: Tue Feb 19 19:22:28 2019 +1300 libgit2: upgraded to version 0.28.1 (closes #1993). commit 71dc6870bc71e07442bac70773200f9f8ee0eb86 Author: Alan Garny Date: Tue Feb 19 19:05:04 2019 +1300 PMR support: use new libgit2 constants/methods (#1993). commit 8aa576318e20711338084d9411a07b93f1f4dc7b Author: Alan Garny Date: Tue Feb 19 18:56:51 2019 +1300 Don't only build libgit2 (#1993). commit 834017ed35aff6f644e672de88356f1836490b9d Author: Alan Garny Date: Tue Feb 19 18:56:08 2019 +1300 Slight update to our downloads page (#1993). commit 67f594664451993f03feb5391b0cbefc3f1a4502 Author: Alan Garny Date: Tue Feb 19 18:55:42 2019 +1300 libgit2: binaries for version 0.28.1 (#1993). commit e2a4e980f659ecc2e5512f1adad6ded33423ae94 Author: Alan Garny Date: Tue Feb 19 18:52:05 2019 +1300 libgit2: make sure that OpenSSL can be found on Linux (#1993). commit 64012a1aa336ec8d2d6387c9cf5282a08976e17b Author: Alan Garny Date: Tue Feb 19 18:09:55 2019 +1300 Only build libgit2 (#1993). commit 8445d4f8f24a7d33dc137f95aba002bc33ebb5a7 Author: Alan Garny Date: Tue Feb 19 18:06:58 2019 +1300 libgit2: upgraded to version 0.28.1 (#1993). commit bf9e8d40ec224cdee7ed725490b0ea6d47deebe7 Author: Alan Garny Date: Tue Feb 19 18:05:55 2019 +1300 Only build libgit2 (#1993). commit d1bd9cb5c26499a4e490324a0f9472c2ae14c15f Merge: 8878e9c8b aea623ff1 Author: Alan Garny Date: Tue Feb 19 17:43:49 2019 +1300 SUNDIALS: upgraded to version 4.1.0 (closes #1995). commit aea623ff1dd17fb9757839465cf7b75a20d736e0 Author: Alan Garny Date: Tue Feb 19 17:27:20 2019 +1300 Slight update to our downloads page (#1995). commit d122b55740013932bb9f5f008afd8e0413507c6d Author: Alan Garny Date: Tue Feb 19 17:26:45 2019 +1300 Don't only build the SUNDIALS library (#1995). commit 15e3176ea7c732ec84649ef6ae71441e450243ea Author: Alan Garny Date: Tue Feb 19 17:26:15 2019 +1300 SUNDIALS: binaries for version 4.1.0 (#1995). commit 49ec40abc14bf58a2f6c6c61b00ec05ae1caf6ca Merge: 8fb0c2f39 8878e9c8b Author: Alan Garny Date: Tue Feb 19 17:18:18 2019 +1300 Merge branch 'master' into issue1995. commit 8878e9c8b186c2cbf7be423c021e0dcf7175e23e Merge: 5c26efb22 4e1c25df4 Author: Alan Garny Date: Tue Feb 19 17:16:19 2019 +1300 Mesa: upgraded to version 18.3.4 (closes #1994). commit 8fb0c2f390264f06cf77a9303d5cdbfe3e8cc8d3 Author: Alan Garny Date: Tue Feb 19 17:12:50 2019 +1300 SUNDIALS: upgraded to version 4.1.0 (#1995). commit d91202f07430b52cc1cdd66ccb9eeac2a78fea80 Author: Alan Garny Date: Tue Feb 19 17:10:14 2019 +1300 Only build the SUNDIALS library (#1995). commit 972e3caadf8d1e61c63b7c89b61988f1d6cb87a7 Author: Alan Garny Date: Tue Feb 19 17:08:57 2019 +1300 Only build the SUNDIALS library (#1995). commit 4e1c25df49ad9290f9bdd9ccd8af3497a3e0502f Author: Alan Garny Date: Tue Feb 19 17:00:38 2019 +1300 Slight update to our downloads page (#1994). commit 29dd19fedf6f8fb47e0336b381a99b5f5bf853ae Author: Alan Garny Date: Tue Feb 19 16:58:37 2019 +1300 Revert "Only build our Mesa library (#1994)." This reverts commit 6050981aed9a35bfbe04767d48ed942b0e833db0. commit 239c47537b6d830937a8cf252dbf1d977ce23b5d Author: Alan Garny Date: Tue Feb 19 16:57:46 2019 +1300 Mesa: binary for version 18.3.4 (#1994). commit ebc4fa545563862c17b0b5ba18a93fd0bdcf1c31 Author: Alan Garny Date: Tue Feb 19 16:52:18 2019 +1300 Mesa: upgraded to version 18.3.4 (#1994). commit 6050981aed9a35bfbe04767d48ed942b0e833db0 Author: Alan Garny Date: Tue Feb 19 16:51:06 2019 +1300 Only build our Mesa library (#1994). commit 5c26efb22c30b45883791aad125e4be8c17ed0fc Merge: 20ef2237b 9a9a614a0 Author: Alan Garny Date: Tue Feb 19 16:34:33 2019 +1300 macOS: now enforce the use of Light Mode (closes #1991). commit 9a9a614a08dc75b9807150ab5fce101150c0b091 Author: Alan Garny Date: Tue Feb 19 16:18:09 2019 +1300 macOS: enforce the use of Light Mode (#1991). commit 20ef2237b12f5185a25b2124dd64229b9b63474c Merge: 53d046177 997f91360 Author: Alan Garny Date: Tue Feb 19 14:28:45 2019 +1300 Some minor cleaning up. commit 997f913603b6a7523714d66061f945200f393f06 Author: Alan Garny Date: Tue Feb 19 13:30:55 2019 +1300 Some minor cleaning up. commit 53d0461770632e4cc80f17b9aecd72ed90e7ef70 Merge: 496f7c1c1 1b8abf368 Author: Alan Garny Date: Mon Feb 18 11:03:23 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. commit 1b8abf3687036a48e380b63b5801fe5cb7c4633f Author: Alan Garny Date: Mon Feb 18 10:46:49 2019 +1300 Renamed our tabbarwidgetmacstyle.mm file to tabbarwidgetmacstyle.cpp. Indeed, we are not planning on planning on having Objective-C code in it anymore. commit 496f7c1c1c4fe72eb01aad7d8aea0cb754f494a8 Merge: 267daa4df 9f1bb15ab Author: Alan Garny Date: Sun Feb 17 12:03:09 2019 +1300 Some minor cleaning up. commit 9f1bb15abe901983ffb9baf10a967619c008f4c9 Author: Alan Garny Date: Sun Feb 17 11:47:35 2019 +1300 Some minor cleaning up. commit 6d6dfccb512025f791f3fcca42d736290d78ca02 Author: Alan Garny Date: Sun Feb 17 10:47:20 2019 +1300 Some minor cleaning up. commit 267daa4dfc6c219f9003387786ea7a27a6674a39 Merge: c61754b6f 455df5ff3 Author: Alan Garny Date: Sat Feb 16 15:49:54 2019 +1300 Some minor cleaning up. commit 455df5ff367c6ea198d34f87a1aae291bf9f89d5 Author: Alan Garny Date: Sat Feb 16 15:23:09 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit 312bb7d48a1b85b0f21ad2c0b16809f93ca5082d Author: Alan Garny Date: Sat Feb 16 15:19:02 2019 +1300 Some minor cleaning up. commit 129023ba821d1ba285cb3dce7e22a7c36ce5d793 Author: Alan Garny Date: Sat Feb 16 15:15:00 2019 +1300 Renamed tabbarwidgetmacstyle.cpp to tabbarwidgetmacstyle.mm. This is more accurate since this is related to macOS. commit c61754b6f31b50bb020c19a22a7870929ea7217c Merge: d59e21f37 1f9a18cdc Author: Alan Garny Date: Sat Feb 16 00:58:42 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. commit 1f9a18cdc0f2ddaa6cf7358a6f0b8c91ab3ac878 Author: Alan Garny Date: Sat Feb 16 00:41:52 2019 +1300 Tab Bar widget: make sure we delete our style on macOS. Indeed, when calling QWidget::setStyle(), the ownership of the style object is not transferred, so we must therefore delete it ourselves. commit d59e21f37cbfafd52983b8b68d1bb85dfd047140 Merge: aec49f145 65b79663f Author: Alan Garny Date: Fri Feb 15 18:24:32 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 65b79663f7613ad5d88c4e62313511d018536ce6 Author: Alan Garny Date: Fri Feb 15 16:23:58 2019 +1300 Tab Bar widget: have the macOS style in its own .cpp/.h files. commit 52773f2db020f89e428234a9e62029edfed72057 Author: Alan Garny Date: Fri Feb 15 16:19:29 2019 +1300 Some minor cleaning up. commit aec49f145a381c29ef94c7bf69522254aa1104d4 Merge: 3b876f256 e99fd3c09 Author: Alan Garny Date: Fri Feb 15 10:11:46 2019 +1300 QScintilla: upgraded to version 2.11.1 (closes #1983). commit e99fd3c097f5affddf02072f56054b53617860d4 Author: Alan Garny Date: Fri Feb 15 09:56:05 2019 +1300 QScintilla support: get things to build fine on Windows (#1983). commit c8f8c5eda8937e301399ca68ee90734598e7405e Author: Alan Garny Date: Fri Feb 15 09:33:22 2019 +1300 Revert "Only build the QScintilla library (#1983)." This reverts commit e9bfa6ef35defdcde88ee2d5898b74580f086058. commit 30a7126da123958c29fd0b92351a2e18db758a0a Author: Alan Garny Date: Fri Feb 15 09:32:43 2019 +1300 Slight update to our downloads page (#1983). commit 61456121eafdbdbf9b27e7ed99a209cb1fd2b07d Author: Alan Garny Date: Fri Feb 15 09:32:15 2019 +1300 QScintilla: binaries for version 2.11.1 (#1983). commit d6b5f90fd2761947b6873b9541ff357223b1f0c5 Author: Alan Garny Date: Fri Feb 15 09:24:32 2019 +1300 QScintilla: upgraded to version 2.11.1 (#1983). commit e9bfa6ef35defdcde88ee2d5898b74580f086058 Author: Alan Garny Date: Fri Feb 15 09:18:50 2019 +1300 Only build the QScintilla library (#1983). commit 3b876f25601a591535a1ec4d273d5f37aeaa17cb Merge: 4561bd1b1 a9a8b857b Author: Alan Garny Date: Thu Feb 14 17:55:31 2019 +1300 Some minor cleaning up. commit a9a8b857b4d24ebcee135e72ff04edf24c4006a5 Author: Alan Garny Date: Thu Feb 14 17:06:45 2019 +1300 Some minor cleaning up. commit 4561bd1b13f69ff4c45119049bbabfecafbbd8c3 Merge: a40c096ce 80b1da497 Author: Alan Garny Date: Thu Feb 14 17:00:01 2019 +1300 Some minor cleaning up. commit 80b1da497c8b8e585bd17909d24bb7b14efebb1f Author: Alan Garny Date: Thu Feb 14 16:20:24 2019 +1300 Some minor cleaning up. commit 9da92ea67baa8a6b13f5cad80ea1a49fa3161495 Author: Alan Garny Date: Thu Feb 14 16:14:11 2019 +1300 Some minor cleaning up. commit a40c096ced0d3fdf410f40a0cee5a851ee76ac83 Merge: 533eac372 d42716dac Author: Alan Garny Date: Wed Feb 13 12:55:05 2019 +1300 Some minor cleaning up. commit d42716dac9057ef220c5b6e85487347c5b07dba2 Author: Alan Garny Date: Wed Feb 13 12:25:39 2019 +1300 Some minor cleaning up. commit 533eac37214095a78b05dd9cf37243f8d9c83193 Merge: b5bcb8633 7d60973ab Author: Alan Garny Date: Wed Feb 13 12:10:44 2019 +1300 Made our `tintedIcon()` method more generic. commit 7d60973ab97dea3c01f341aab4d1f7f70efee194 Author: Alan Garny Date: Wed Feb 13 11:50:10 2019 +1300 Made our `tintedIcon()` method more generic. commit a781288616eac8a25df190b70c96582aa07dd573 Author: Alan Garny Date: Wed Feb 13 11:40:47 2019 +1300 Some minor cleaning up. commit b5bcb86331ac2177306db77d9cba15a5d5bf7603 Merge: 820e8d647 273d4dffa Author: Alan Garny Date: Wed Feb 13 09:10:30 2019 +1300 Some minor cleaning up. commit 273d4dffa1f2ac8bad04772a18eddbbb435a5c5c Author: Alan Garny Date: Wed Feb 13 08:44:48 2019 +1300 Removed unnecessary `newLineWidget()` methods. commit ff28fd5ee6f4225c299d7f87211a7453bac10ffb Author: Alan Garny Date: Wed Feb 13 08:44:12 2019 +1300 Some minor cleaning up. commit 2b408d50e034715235453dc547cc666a92af2da3 Author: Alan Garny Date: Wed Feb 13 08:43:35 2019 +1300 Some minor cleaning up. commit 666a725639597071d827effbfa52529f0d3e04ca Author: Alan Garny Date: Wed Feb 13 08:43:10 2019 +1300 Some minor cleaning up. commit fcd4c46fba81ad83c10b26d2c2146a3ef2678186 Author: Alan Garny Date: Wed Feb 13 08:42:52 2019 +1300 Some minor cleaning up. commit 8a73a05cff2522602ac55cbc3cad633af73f4eb5 Author: Alan Garny Date: Wed Feb 13 08:42:27 2019 +1300 Some minor cleaning up. commit 27712648195e2d6407be93badbe0b5e58f3bc614 Author: Alan Garny Date: Wed Feb 13 08:40:37 2019 +1300 Programmatically prevent drag & drop on a(n OpenCOR-based) Web page. commit 3b52c682558aa3e0a1bc4f6ebf67d96494c5e999 Author: Alan Garny Date: Wed Feb 13 08:14:51 2019 +1300 Programmatically prevent drag & drop on a(n OpenCOR-based) Web page. commit df4518af1330f4f897d1fbd669b2646c4acdf5a8 Author: Alan Garny Date: Wed Feb 13 08:12:45 2019 +1300 CSS: replaced `background` with `background-color` wherever possible. commit 820e8d6471ace8ca8b1650ac017b428b22a5d759 Merge: b5d5fb40e 237d1a52a Author: Alan Garny Date: Mon Feb 11 10:28:11 2019 +1300 QScintilla: upgraded to version 2.11 (closes #1976). commit 237d1a52a98fbc1b337669cba1128eba6130edb5 Author: Alan Garny Date: Mon Feb 11 09:45:25 2019 +1300 Slight updates to our downloads pages (#1976). commit 3b9440063db89d12d48ac534bd97a9a057a4e3c5 Author: Alan Garny Date: Mon Feb 11 09:42:30 2019 +1300 Revert "Only build the QScintilla library (#1976)." This reverts commit e1ff67ab3e80153f85dee961b5061c2be613ddde. commit be9d40a3613e8f21a049235ba0d36a6bdf6c869c Author: Alan Garny Date: Mon Feb 11 09:42:14 2019 +1300 QScintilla: binaries for version 2.11 (#1976). commit 7bfb5480086c3065bb608606893190d75c9280bb Author: Alan Garny Date: Mon Feb 11 09:34:51 2019 +1300 QScintilla: upgraded to version 2.11 (#1976). commit e1ff67ab3e80153f85dee961b5061c2be613ddde Author: Alan Garny Date: Mon Feb 11 09:30:28 2019 +1300 Only build the QScintilla library (#1976). commit b5d5fb40e70ceb0bb5760766b6373390ffe8116d Merge: 8cbb052b8 7c8b3da03 Author: Alan Garny Date: Thu Feb 7 11:26:10 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 7c8b3da03365c68f9af4dac7d86e15b614a034fa Author: Alan Garny Date: Thu Feb 7 11:06:19 2019 +1300 Some minor cleaning up following the release of Qt 5.12.1. commit 8cbb052b8c76dfa501bdc944ef73a28ed38b05ef Merge: f0e710eec 4096c9bce Author: Alan Garny Date: Fri Feb 1 15:05:32 2019 +1300 New snapshot. commit 4096c9bcebef54c99ecb83badf336f9e28888ad8 Author: Alan Garny Date: Fri Feb 1 14:49:45 2019 +1300 New snapshot. commit f0e710eecbc89f32b9efb1b9ce9dc3eea94da222 Merge: 0354d7563 4af091906 Author: Alan Garny Date: Fri Feb 1 14:44:40 2019 +1300 Simulation Experiment view: added basic support for the import of external data (closes #1845). commit 4af0919067ab24dd858c082a98b5d5c1fa905d8c Author: Alan Garny Date: Fri Feb 1 14:19:35 2019 +1300 Slight update to our downloads and what is new pages (#1845). commit 90aa3ee1f2b557ce451f710b240e44c08e9be42e Author: Alan Garny Date: Fri Feb 1 14:15:19 2019 +1300 Simulation support: show import values for the current (i.e. starting) point when resetting all our resets (#1845). commit 7c8342c541a63c504090f492b7b3cb42d6c054b5 Author: Alan Garny Date: Fri Feb 1 13:57:33 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs (#1845). commit e0bce81fb02d5c22e6e0c0198a76da632489384e Author: Alan Garny Date: Fri Feb 1 11:59:11 2019 +1300 Some minor cleaning up. commit dfd914bc008e4d43edd31ee664bd16d31a4c628f Author: Alan Garny Date: Fri Feb 1 10:54:33 2019 +1300 Some minor cleaning up. commit c5b41826c57235e8f80e9728006547de81d6a526 Author: Alan Garny Date: Fri Feb 1 09:36:22 2019 +1300 Simulation support: show import values for the starting point when importing experimental data and there are no runs (#1845). commit a080615eae0cbcca08207bb6d61becf8e43b9c35 Merge: f469f7382 0354d7563 Author: Alan Garny Date: Thu Jan 31 17:54:33 2019 +1300 Merge branch 'master' into issue1845 commit 0354d7563ff4d6923b83f31093664adc8f0c6f86 Merge: 2bf9694d7 d60c9416b Author: Alan Garny Date: Thu Jan 31 17:52:51 2019 +1300 Simulation Experiment view: fixed various issues with saving a file under a new name (closes #1967). commit d60c9416b40fe3bfa6e9040482055e7c59a5982e Author: Alan Garny Date: Thu Jan 31 14:59:27 2019 +1300 Slight updates to our downloads and what is new pages (#1967). commit 5f1d8ba8ba0eb98c62fa16f7196a0a31ab641520 Author: Alan Garny Date: Thu Jan 31 14:52:56 2019 +1300 Simulation support: properly handle the case where we save a file under a new name (#1967). commit e002df01b42e10dcec394eedb904049a73fb3b6e Author: Alan Garny Date: Thu Jan 31 14:33:07 2019 +1300 Simulation Experiment view: always update the reset state/all model parameters actions. Until now, we were only updating them if we were not in development, which is clearly not what we want. commit d9e5f84d1f06f630a7d16120d147b42fd87f9c39 Author: Alan Garny Date: Thu Jan 31 14:31:19 2019 +1300 Some minor cleaning up. commit 1a54bc21e320644fe894aebcc7b778b3ec1c20cf Author: Alan Garny Date: Thu Jan 31 14:14:38 2019 +1300 Some minor cleaning up. commit f43aba8fe2d2737e53318ab9cf9d87628dd5b7d9 Author: Alan Garny Date: Thu Jan 31 14:14:09 2019 +1300 Some minor cleaning up. commit 6efdcb7a02e11f20fdbe699a8d755237a6306a46 Author: Alan Garny Date: Thu Jan 31 09:53:07 2019 +1300 CellML support: don't have a runtime track its CellML file (#1967). Indeed, the tracked CellML file may become obsolete if it gets saved under a new name. commit 0853d87624cd25a5f622fda8eb79c0b66cea09eb Author: Alan Garny Date: Thu Jan 31 09:42:04 2019 +1300 Simulation: update our internals if our file is being remanaged (#1967). commit f469f7382da186ef7581278c9bff7a44bc9e5035 Author: Alan Garny Date: Wed Jan 30 15:44:20 2019 +1300 Data store interface: we don't want to rethrow but simply throw an exception (#1845). commit ca3cf15de1359c93ea48d94b8fa3b602eea87ed4 Author: Alan Garny Date: Wed Jan 30 15:43:51 2019 +1300 Revert "Data store interface: we don't want to rethrow but simply throw an exception (#1845)." This reverts commit 558c4c658f2970c68392dbf287da8c94fd588c0d. commit 558c4c658f2970c68392dbf287da8c94fd588c0d Author: Alan Garny Date: Wed Jan 30 15:42:39 2019 +1300 Data store interface: we don't want to rethrow but simply throw an exception (#1845). commit dbd13980297526c0e5e63b9efdcfc00adfa66026 Author: Alan Garny Date: Wed Jan 30 15:39:42 2019 +1300 Data store import data: results values are never to be freed since they are managed by whoever used the import data (#1845). I should read my own comments! commit 314eea8fcf3284f597cc364f2420486696053f8f Author: Alan Garny Date: Wed Jan 30 15:09:01 2019 +1300 Some minor cleaning up. commit c0586b6c21c991ebd2281c57207772917cd1c3e9 Author: Alan Garny Date: Wed Jan 30 15:00:18 2019 +1300 Data store interface: properly handle the case where a run cannot be added to a variable (#1845). This also comes handy for our import of external data in case there are already some runs, meaning that we would need to add runs for our computed imported results. commit 48e68b72e47332e071f589add02657db3ad47a7b Author: Alan Garny Date: Wed Jan 30 14:48:53 2019 +1300 Some minor cleaning up. commit 9c2d2072fb3a694672db179bc4e2a0a11e10fead Author: Alan Garny Date: Wed Jan 30 14:44:30 2019 +1300 Data store interface: prevent double deleting (and therefore crash) in DataStoreImportData (#1845). commit 5476e92fdd8d0e3ab985183e008bcb43c477a3b9 Author: Alan Garny Date: Wed Jan 30 14:40:59 2019 +1300 Data store interface: our extra runs actually get removed when removing our import and results variables (#1845). commit d22586c3a384e8b1b369ca6e8bd9965edb67f1fa Author: Alan Garny Date: Wed Jan 30 13:28:41 2019 +1300 Some minor cleaning up. commit 1aca9324d332a3fdb3dbf0e1d6022ea9c11bbcc7 Merge: f00466846 2bf9694d7 Author: Alan Garny Date: Wed Jan 30 11:24:17 2019 +1300 Merge branch 'master' into issue1845. commit 2bf9694d7cc2cccc8c02d81b2c9b74524178e3e4 Merge: 5a37c2d73 4677052a9 Author: Alan Garny Date: Wed Jan 30 11:10:20 2019 +1300 Cleaning up. commit 4677052a97d261b7856ab6a7fbc6236b85e3d883 Author: Alan Garny Date: Wed Jan 30 10:35:33 2019 +1300 Some minor cleaning up. commit 86af61300d6fb2f7703025ae0fcc359c732de78d Author: Alan Garny Date: Wed Jan 30 10:30:03 2019 +1300 Some minor cleaning up. commit b7c0c2dcc56d80a16d72ca8436b98524aaf28df4 Author: Alan Garny Date: Wed Jan 30 10:24:25 2019 +1300 CliApplication::command(): have the command passed to it separately rather than as part of our arguments. commit 51a200489e400220feaf8be0b1adb24309f0d565 Author: Alan Garny Date: Wed Jan 30 10:04:07 2019 +1300 CLI version: options are well... options for a command. commit 5a37c2d73d90e8da5f92c4440fd9adaa86135d1a Merge: 72cd468d1 9181d236f Author: Alan Garny Date: Tue Jan 29 19:02:35 2019 +1300 CellML tools: can now validate a file from the command line (closes #1964). commit 9181d236f451540e45bf68433ed4b0b2294351d1 Author: Alan Garny Date: Tue Jan 29 18:34:15 2019 +1300 CellML tools: remove HTML tags from our validation output (#1964). commit c237d002ca0437dba4f02ae31c03cbcd87c181b8 Author: Alan Garny Date: Tue Jan 29 18:33:15 2019 +1300 CellML support: slight improvement to our validation. Indeed, OpenCOR would crash if an imported CellML file was XML-malformed. commit 254038571838a5cb046b193a8b40155c373d971e Author: Alan Garny Date: Tue Jan 29 17:45:12 2019 +1300 Slight update to our downloads and what is new pages (#1964). commit e9991e28b101a0ce4508793c86b993cf028f26a2 Author: Alan Garny Date: Tue Jan 29 17:36:33 2019 +1300 Tests: have our runCli() method runt an integer and its output as a parameter passed by reference. This is useful for our work on issue #1964 since it allow us to test the exit code of the CLI version of OpenCOR while still being able to access its output. commit 73b4061da7df7ab1b3f1248f663835ec6ae4b743 Author: Alan Garny Date: Tue Jan 29 17:33:40 2019 +1300 CellML tools: don't consider a file valid before actually trying to validate it (#1964). commit 1ead9aa641bef781be944805dc7b63b3a77eceee Author: Alan Garny Date: Tue Jan 29 17:32:43 2019 +1300 CLI version: return -1 if the command option failed for some reason or another. commit 8957e83be27b2c589f7a4dd3f29b5a2b64186a20 Author: Alan Garny Date: Tue Jan 29 17:32:04 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit ec5c674287543684609234140543510340e0be2c Author: Alan Garny Date: Tue Jan 29 16:34:18 2019 +1300 CLI tests: check that some options/command have the right number of arguments. commit ac0551546fc0eb5242b51b0a71f353b0dfc26740 Author: Alan Garny Date: Tue Jan 29 16:33:47 2019 +1300 CLI version: make sure that some options indeed have only one argument. commit 219af848e2e9abe4aacc43e44b7545e87166672f Author: Alan Garny Date: Tue Jan 29 16:29:02 2019 +1300 CellML tools: can now validate a file from the command line (#1964). commit a501ec014f908ee96f5e01d32012c966ae3727a8 Author: Alan Garny Date: Tue Jan 29 16:25:13 2019 +1300 Some minor cleaning up. commit 40779b9d6582ef80568eb925092cbb0140e931fe Author: Alan Garny Date: Tue Jan 29 16:23:22 2019 +1300 Some minor cleaning up. commit b99a1b04006349f42eba8675f407f1e2b714e929 Author: Alan Garny Date: Tue Jan 29 15:52:54 2019 +1300 CellML tools: can now validate a file from the command line (#1964). commit 9b53a7acc533995f78423c9edb3be57ee559bdbe Author: Alan Garny Date: Tue Jan 29 15:20:13 2019 +1300 Some minor cleaning up. commit a7a4da9104d818fb5ee5a2b748be835d6166f63b Merge: 03c0ce549 72cd468d1 Author: Alan Garny Date: Fri Jan 25 18:41:14 2019 +1300 Merge branch 'master' into issue1801. commit f004668464a3e2baec4d0d9c79d249a0697bafc2 Merge: 234e6bc74 72cd468d1 Author: Alan Garny Date: Fri Jan 25 18:40:16 2019 +1300 Merge branch 'master' into issue1845. commit 72cd468d15583079b83c91d46954d27366460822 Merge: 59583badd 939e96eb3 Author: Alan Garny Date: Fri Jan 25 18:39:15 2019 +1300 CellML Annotation view: prevent OpenCOR from crashing after a CellML file has been rendered invalid (closes #1958). commit 939e96eb3564a1e15ddbdfc1a53ee23d190941e4 Author: Alan Garny Date: Fri Jan 25 18:14:49 2019 +1300 Slight updates to our downloads and what is new pages (#1958). commit 4196607441a1c628a51f468be46da55a4f762d61 Author: Alan Garny Date: Fri Jan 25 18:14:22 2019 +1300 CellML Annotation view: make sure that we have a model before actually populating ourselves (#1958). commit a48d27d785a42cdeea90e6a12b20ab4e5c7855ba Author: Alan Garny Date: Fri Jan 25 18:13:55 2019 +1300 Some minor cleaning up. commit e1714d2ef964128e52b62dc175c1d6f6941ba9df Author: Alan Garny Date: Fri Jan 25 18:13:18 2019 +1300 Some minor cleaning up. commit 395022c665cafe32b248040d2f8f649b389a4d1c Author: Alan Garny Date: Fri Jan 25 18:13:04 2019 +1300 Some minor cleaning up. commit 59583baddf356f73808a094ea95af48100da43aa Merge: 0b6218594 09f78c236 Author: Alan Garny Date: Fri Jan 25 12:27:12 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (closes #1960). commit 09f78c2362b6553513348603dd766d092abc9a65 Author: Alan Garny Date: Fri Jan 25 11:56:13 2019 +1300 Some minor cleaning up. commit 110f6b54a7f723781105efab9f87c686251f7b34 Author: Alan Garny Date: Fri Jan 25 11:54:23 2019 +1300 KINSOL solver: use the new recommended methods (#1960). commit 7bc23938fdb1758c541759b9a6e424e0c3c027a8 Author: Alan Garny Date: Fri Jan 25 11:54:08 2019 +1300 Some minor cleaning up. commit 66156abf7c0c2950432fffbe962affa7051e5c87 Author: Alan Garny Date: Fri Jan 25 10:22:15 2019 +1300 SUNDIALS: binaries for version 4.0.2 (#1960). commit e0dff5ca5b641a1548e41ae46a14f2b06d5d3daf Author: Alan Garny Date: Fri Jan 25 10:17:02 2019 +1300 Slight update to our downloads page (#1960). commit 5e9e07653b3d50cde573162c1d7ff9762bc0a9aa Author: Alan Garny Date: Fri Jan 25 10:15:44 2019 +1300 Revert "Only build our SUNDIALS package (#1960)." This reverts commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f. commit f49a172265922a73663e23c162ac5a4ae2e5d9bb Author: Alan Garny Date: Fri Jan 25 09:56:13 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (#1960). commit dfcb066bbdd903cfbeeb54fcb104fc23686fb24f Author: Alan Garny Date: Fri Jan 25 09:34:13 2019 +1300 Only build our SUNDIALS package (#1960). commit 6fed7ae12b3c98e6a588ecd196dcf1b09f5c970f Author: Alan Garny Date: Fri Jan 25 09:33:56 2019 +1300 Revert "Only build our SUNDIALS package (#1960)." This reverts commit 4a362f10a46502c30307c465fd591b1526b12f16. commit f6ad71083735c446a644599d829cd418af4ac8b7 Author: Alan Garny Date: Fri Jan 25 09:27:40 2019 +1300 SUNDIALS: upgraded to version 4.0.2 (#1960). commit 4a362f10a46502c30307c465fd591b1526b12f16 Author: Alan Garny Date: Fri Jan 25 09:27:23 2019 +1300 Only build our SUNDIALS package (#1960). commit 234e6bc74b83139082835b5a44c37d2b67ff9612 Author: Alan Garny Date: Thu Jan 24 17:08:41 2019 +1300 Import of data in a simulation: add the results runs in DataStoreImportData (#1845). So that we can (next) handle the case where not all the memory could be handled. commit 0a0e0218655e251d4b31e0bd3893084a8b117b53 Author: Alan Garny Date: Thu Jan 24 16:29:38 2019 +1300 Some minor cleaning up. commit 4e2f2db70a705496dc9ef0283e6a822915983747 Author: Alan Garny Date: Thu Jan 24 15:39:45 2019 +1300 Import of data in a simulation: use the results variables created by DataStoreImportData (#1845). commit 49a48fc2396958eb39880a3eae2e9fb948956309 Author: Alan Garny Date: Thu Jan 24 15:32:18 2019 +1300 DataStoreImportData: give access to our import/results variables (#1845). commit d132080f2a886db231a0769d8c1735248b33dfc3 Author: Alan Garny Date: Thu Jan 24 14:39:13 2019 +1300 Some minor cleaning up. commit e5a71209aee5b6ead45ddd94515c0ddd28ea3c71 Author: Alan Garny Date: Thu Jan 24 14:33:04 2019 +1300 Have DataStoreImportData tell whether it is valid (#1845). Better than checking for imported values (for example). commit 5a61dc2324130f99e9537c25dc23c12b481171ce Author: Alan Garny Date: Thu Jan 24 14:32:16 2019 +1300 Some minor cleaning up. commit 12cf9ee59ecd91d7d4f4a4eb3438d003a21c1781 Author: Alan Garny Date: Thu Jan 24 14:13:13 2019 +1300 Have DataStoreImportData try to create our results values (#1845). commit 2c8825082dd3001bcff1b6b8287506d0ec699e1f Author: Alan Garny Date: Thu Jan 24 14:11:22 2019 +1300 Some minor cleaning up. commit 3f24526f9ccd9a7dc4c15e3b5094419699e4d64b Author: Alan Garny Date: Thu Jan 24 13:50:33 2019 +1300 Some minor refactoring of DataStoreImportData (#1845). Since we are going to add some results values. commit cd31e0fe9b002d6dca8cc1979c6a73a678353fc4 Author: Alan Garny Date: Thu Jan 24 13:20:24 2019 +1300 Some minor cleaning up. commit 733ef655f4bd2cc21a4128a6f9897c3a628d13ee Author: Alan Garny Date: Thu Jan 24 13:18:07 2019 +1300 Data store interface: pass a results data store to our getImportData() (#1845). commit 4eddaa1b0458295a62602a23fd2e31246618a0a0 Author: Alan Garny Date: Thu Jan 24 13:14:44 2019 +1300 Have DataStoreImportData know about our results data store too (#1845). commit 8a557e13d410feb12a0a82acd9a8a417d97285e9 Author: Alan Garny Date: Thu Jan 24 11:35:26 2019 +1300 Some minor cleaning up. commit 5b016db1b7f42339c680eccff7e899f8a5770b19 Author: Alan Garny Date: Thu Jan 24 11:32:39 2019 +1300 Some minor cleaning up. commit 2b30213bbf5bd2507599cfd754c2906ae3e026ec Author: Alan Garny Date: Thu Jan 24 11:28:39 2019 +1300 Data store: improved our DataStoreImportData constructor (#1845). Indeed, if adding variables was to fail, we were not able to remove them since the call to DataStore::addVariables() didn’t return properly. So, now, we add one variable at a time and keep track of the ones that we were able to add, in case we would need to remove them. commit 8cd333dd69771522c53802794a75b6ecd866ea32 Author: Alan Garny Date: Wed Jan 23 17:33:48 2019 +1300 Have DataStoreImportData to handle the progress of a data import (#1845). commit bdd18ba77767a58c9eb70537e3d21dd41bca39b1 Author: Alan Garny Date: Wed Jan 23 17:10:37 2019 +1300 Some minor cleaning up. commit 713b118ab95f73fdbd6f051eb26322f5121863ac Author: Alan Garny Date: Wed Jan 23 17:08:06 2019 +1300 Simulation Experiment view: account for the fact that we might have problems getting our import data (#1845). I.e. we can either not access the data file (anymore) or we cannot allocate all the memory we need to store the data. commit 96174e5090f4483beabdfaed64f091c9be2f4c1f Author: Alan Garny Date: Wed Jan 23 16:23:14 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things (#1845). commit 7552f31686be8a0352e93ae4f4302fdbf070b807 Author: Alan Garny Date: Wed Jan 23 16:21:49 2019 +1300 Data store imports: speed things up a bit and cleaned up a few things (#1845). commit e2f9b707422150d219b17aea2dec3d4dda0707e2 Author: Alan Garny Date: Wed Jan 23 16:02:08 2019 +1300 Data store import: have our DataStoreImportData constructor to add a run to our data store (#1845). commit 4346f85c5b18dac84243d30503919581ec88be1c Author: Alan Garny Date: Wed Jan 23 15:54:03 2019 +1300 Data store import: have our DataStoreImportData constructor to add the required number of variables to our data store (#1845). commit be1798b15637edb99b9a377d80e6cedc1cf2efa3 Author: Alan Garny Date: Wed Jan 23 15:48:02 2019 +1300 Data store import: have our DataStoreImportData constructor to allocate the values array that will be used to import data (#1845). commit 4b34077e2a4468ae3ff2bf84bee8d81c25b71b3e Author: Alan Garny Date: Wed Jan 23 15:13:37 2019 +1300 Simulation Experiment view: fixed and improved our import progress (#1845). For one, we were doing a min using `pProgress` rather than `progress`. Then, there is something maybe faster, but certainly shorter/cleaner, which consists of using std::min_element(). commit ac76c3127194671d073954deb4acc813c810cb9d Author: Alan Garny Date: Wed Jan 23 14:28:33 2019 +1300 Simulation Experiment view: optimised the dragging and dropping of data files (#1845). We keep track of valid files when dragging them over the view, so we don’t have to test them again before actually importing them. commit b51a719d77eb141b4b73b590d95d16b267a5bdcb Author: Alan Garny Date: Wed Jan 23 14:08:40 2019 +1300 Some minor cleaning up. commit 3b2acc9c5ad74d16f82b3ee11ef9d5c5bb422fa4 Author: Alan Garny Date: Wed Jan 23 13:37:14 2019 +1300 CSV data store: use CRLF to separate lines in our export. This is what https://csvlint.io/ told us to do after we validated a CSV file (generated by OpenCOR) that uses LF. commit 78f6d1f90b553be40e3e2f197de9618ccc71a345 Author: Alan Garny Date: Wed Jan 23 13:03:43 2019 +1300 Some minor cleaning up. commit a398ae2af984a39aa04ef250108a0aaa4c52bdb2 Author: Alan Garny Date: Wed Jan 23 13:03:11 2019 +1300 Simulation Experiment view: retrieve the number of data points to import before doing the import itself (#1845). This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit bf52910de705329797907bc8c0294788e301f87d Author: Alan Garny Date: Wed Jan 23 10:40:20 2019 +1300 Some minor cleaning up. commit 0e292a91f7478fa21bf8e5643c3e9fcb1a6011d6 Author: Alan Garny Date: Wed Jan 23 10:38:55 2019 +1300 Simulation Experiment view: retrieve the number of variables to import before doing the import itself (#1845). This is needed, so we can determine how much memory is going to be needed and, thus, decide whether the import can go ahead. commit 3a6adbf842c3aae9f2700b39d0c67bb7a1a6273a Merge: aa188d482 0b6218594 Author: Alan Garny Date: Mon Jan 21 11:36:09 2019 +1300 Merge branch 'master' into issue1845. commit 0b6218594a89bcc2d2d02fb6390105275e316a3f Merge: 19c712b55 fab2b64e3 Author: Alan Garny Date: Mon Jan 21 11:34:12 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned (closes #1956). commit fab2b64e344fab69af2b2a8236b963e9b457aa3e Author: Alan Garny Date: Mon Jan 21 11:17:03 2019 +1300 Slight updates to our downloads and what is new pages (#1956). commit 5af6640270725218ebf42c304769db05d1088467 Author: Alan Garny Date: Mon Jan 21 11:13:56 2019 +1300 Simulation Experiment view: ensure that graph panels are always properly aligned (#1956). commit 19c712b558e3a8d8af42dce415e5357d055dedbc Merge: 23177ccd5 386049740 Author: Alan Garny Date: Mon Jan 21 10:58:22 2019 +1300 Some minor cleaning up. commit 3860497408f6db0c7986bdc2fb1464f6c916e9ca Author: Alan Garny Date: Mon Jan 21 10:24:46 2019 +1300 Some minor cleaning up. commit bde274690fcebd50e18f47eac9e11d4d0bdd0f73 Author: Alan Garny Date: Mon Jan 21 10:08:45 2019 +1300 Some minor cleaning up. commit aa188d482c432724c958fa146e01b579c8118081 Author: Alan Garny Date: Fri Jan 18 15:53:23 2019 +1300 Simulation: compute the values of imported data when we already have some simulation results (#1845). commit 4a42e503652e0d6cf48e3a340d8a4f0bf86e2bf2 Author: Alan Garny Date: Fri Jan 18 15:34:59 2019 +1300 Data store: don't prevent the addition of variables when there are already some runs (#1845). Indeed, it’s up to the caller to be careful and do whatever needs doing if adding variables to a data store that already has some runs (i.e. what we now do in SimulationResults::importData()). commit 985d7c5f7bccd21abac76712bc3238cd4a8e050f Author: Alan Garny Date: Fri Jan 18 15:32:59 2019 +1300 Some minor cleaning up. commit a341231dbdd503182d766b9e0dc5e01b12851209 Author: Alan Garny Date: Fri Jan 18 15:03:42 2019 +1300 Added SimulationResults::realValue() to make things easier to compute the value of imported data that have just been imported when there are already some simulation results (#1845). commit 571ba1976dde914e70d1d84adb131fb8ab3fc7de Author: Alan Garny Date: Fri Jan 18 12:50:52 2019 +1300 Added SimulationResults::realPoint() to make things easier to compute imported data that have just been imported when there are already some simulation results (#1845). commit 4274e888e8e58ae76fe03048b92ec8848a93184f Author: Alan Garny Date: Fri Jan 18 11:58:25 2019 +1300 Revert "Some minor cleaning up." This reverts commit 6863e83c5ff23ad61e884115623929a33610d539. commit 6863e83c5ff23ad61e884115623929a33610d539 Author: Alan Garny Date: Fri Jan 18 11:48:22 2019 +1300 Some minor cleaning up. commit 03c0ce5497c1adaef530a078191a18b3120e9b8a Merge: 8bb270dfe 23177ccd5 Author: Alan Garny Date: Thu Jan 17 16:45:42 2019 +1300 Merge branch 'master' into issue1801. commit 8fe9038d0ee4839a76749139b74ddc94e6f6e470 Merge: 27405dfe9 23177ccd5 Author: Alan Garny Date: Thu Jan 17 16:44:14 2019 +1300 Merge branch 'master' into issue1845. commit 23177ccd50316f9b8627a5e46b244b6ab316214a Merge: 51f0fc972 125d5d798 Author: Alan Garny Date: Thu Jan 17 16:43:23 2019 +1300 Some minor cleaning up. commit 27405dfe971cc645970a233c7424285fa63ce54e Author: Alan Garny Date: Thu Jan 17 16:32:17 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file (#1845). commit a4dbbd8fd86bcbfe991b6bd4c96d9b66ae1b7c58 Author: Alan Garny Date: Thu Jan 17 16:28:10 2019 +1300 Some minor cleaning up. commit 125d5d798308c8f23fb0ba9b90e49c410d413680 Merge: 880634b43 51f0fc972 Author: Alan Garny Date: Thu Jan 17 16:14:09 2019 +1300 Merge remote-tracking branch 'opencor/master' commit 880634b4370e85919750f3a905cba4b7ec4309d2 Author: Alan Garny Date: Thu Jan 17 16:13:40 2019 +1300 Some minor cleaning up. commit 5d51f79a7e613735b5f89201bb38eab35c01c5fe Author: Alan Garny Date: Thu Jan 17 16:12:33 2019 +1300 Some minor cleaning up. commit d0abac84098595f8941ef569dc398db1c3d5a09f Author: Alan Garny Date: Thu Jan 17 15:32:32 2019 +1300 BioSignalML data store: can now import the data contained in a BioSignalML file (#1845). commit f594cdf69c2d9fa89848900bc2f50717659bb88b Author: Alan Garny Date: Thu Jan 17 15:24:49 2019 +1300 Some minor cleaning up. commit a585e6b248b8ff3b0b816a7cbf76cc9721f0986f Merge: b393f7fc0 51f0fc972 Author: David Brooks Date: Thu Jan 17 15:20:05 2019 +1300 Merge branch 'master' into pythonplugin commit e06de3c00931bfae8c7652dcfeef2de0caf17f48 Author: Alan Garny Date: Thu Jan 17 14:55:45 2019 +1300 Some minor cleaning up. commit 93c9ef842391e48c9024394976a11ab4de516358 Author: Alan Garny Date: Thu Jan 17 14:43:07 2019 +1300 Some minor cleaning up. commit 51f0fc972ca9535fb9239abf3120d5fec61b5695 Merge: 7b046e30b 7930f525d Author: Alan Garny Date: Thu Jan 17 13:51:53 2019 +1300 CMake: show URL when we have download errors. commit 7930f525db316a796e0cdb795cfb2085f4361ddc Author: David Brooks Date: Thu Jan 17 13:09:03 2019 +1300 CMake: show URL with all download errors. commit 4122fce7a6c667faaa532272bdbb3141a5c82e83 Author: David Brooks Date: Thu Jan 17 12:06:04 2019 +1300 CMake: tweak messages when download errors. commit f6cb6d2dc4c973dd8078a02e32cbd2a74f95be76 Author: Alan Garny Date: Thu Jan 17 11:49:52 2019 +1300 Some minor cleaning up. commit bf05cc8d4692821be6e99a2965a4871098d098a8 Author: Alan Garny Date: Thu Jan 17 11:37:06 2019 +1300 Some minor cleaning up. commit abfbf8382dd6703fc7f50c43616085dc4224f229 Author: Alan Garny Date: Thu Jan 17 11:28:00 2019 +1300 Some minor cleaning up. commit b393f7fc0ddbf3e6fdf60bb7ce0b8184fd2f064f Merge: da1b9154d 7b046e30b Author: David Brooks Date: Thu Jan 17 10:56:37 2019 +1300 Merge branch 'master' into pythonplugin commit 12c9fd5358d92f297f8ea5dfbe57e8dcca9e1c48 Author: David Brooks Date: Thu Jan 17 10:44:15 2019 +1300 CMake: show URL when we have download errors. commit 037f362113648edcc14f0edfed537f2dc68ca025 Merge: 5bb8ae1c8 7b046e30b Author: Alan Garny Date: Thu Jan 17 10:23:05 2019 +1300 Merge branch 'master' into issue1845. commit 8bb270dfe4835141c2edd8a9110b89340cfc53a6 Merge: 2d31bb435 7b046e30b Author: Alan Garny Date: Thu Jan 17 10:22:33 2019 +1300 Merge branch 'master' into issue1801. commit 7b046e30b2c0aa041e3e167ef933a4ffa880cabf Merge: 2f327d9c1 65352df34 Author: Alan Garny Date: Thu Jan 17 10:20:57 2019 +1300 Revert "File Organiser window: slightly reworked the loading/saving of settings." commit 65352df343a9829f12f04cd2bcad9e26c5bf39be Author: Alan Garny Date: Thu Jan 17 09:58:07 2019 +1300 Revert "File Organiser window: slightly reworked the loading/saving of settings." This reverts commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f. Indeed, that commit broke backward compatibility. To use `master` OpenCOR was fine, but then if we were to use OpenCOR 0.6 (or an earlier version of OpenCOR), OpenCOR would crash straightaway. So, although we don't need itemInfo[1] anymore, we still keep it to ensure backward compatibility. commit 5bb8ae1c8a56c9596751648dbd51423dd30e1000 Author: Alan Garny Date: Wed Jan 16 18:08:16 2019 +1300 BioSignalML data store: can now recognise a BioSignalML file (#1845). commit 8a6ee87b57e904b571f8aadab53b58283809dbfc Author: Alan Garny Date: Wed Jan 16 18:04:35 2019 +1300 Some minor cleaning up. commit 3ac13aecd40fd5adc1a3b424809bbca62af4b9e0 Author: Alan Garny Date: Wed Jan 16 17:37:57 2019 +1300 Some minor cleaning up. commit d1a127381310f28824938f77d9a2e996c37067dc Merge: 4a4ff2335 2f327d9c1 Author: Alan Garny Date: Wed Jan 16 17:16:50 2019 +1300 Merge branch 'master' into issue1845. commit 2d31bb435a137a036161056787596d9ca0d7cc3f Merge: 8784de414 2f327d9c1 Author: Alan Garny Date: Wed Jan 16 17:16:21 2019 +1300 Merge branch 'master' into issue1801. commit 2f327d9c19721248dc59ba3b41ee2ae072d2fe09 Merge: b8164238c 8bca58aeb Author: Alan Garny Date: Wed Jan 16 17:15:17 2019 +1300 CMake: better error reporting when we can't retrieve a prebuilt package. commit 8bca58aeb79061c7173bb8b160e43df3842a4f2b Author: Alan Garny Date: Wed Jan 16 16:58:52 2019 +1300 CMake: better error reporting when we can't retrieve a prebuilt package. commit 4a4ff23359de49f38213688d3681c81125c37764 Merge: 81c0c8614 b8164238c Author: Alan Garny Date: Tue Jan 15 17:40:55 2019 +1300 Merge branch 'master' into issue1845. commit 8784de4145186f0bf9c674eb103b7802fb4ae8c6 Merge: 36227b15b b8164238c Author: Alan Garny Date: Tue Jan 15 17:20:06 2019 +1300 Merge branch 'master' into issue1801. commit b8164238c35f42ee5f79f79d5da4195aeb8034b5 Merge: 26f4a461b 74863874b Author: Alan Garny Date: Tue Jan 15 17:18:06 2019 +1300 Some minor cleaning up. commit 36227b15bfdd01e33344ee1a47c1df0b4edf5808 Author: Alan Garny Date: Tue Jan 15 17:09:03 2019 +1300 Some minor cleaning up. commit 25feb6a65dc18dc3e5fdf90e5a08b04ca7f2f5d7 Author: Alan Garny Date: Tue Jan 15 17:07:36 2019 +1300 Some minor cleaning up. commit 74863874b2c17e29263c20e5f509be9b6c2bc2e9 Author: Alan Garny Date: Tue Jan 15 17:01:26 2019 +1300 Some minor cleaning up. commit 576334f8b79619ad1694110ac4a38813d98a208c Merge: 57633a2f0 26f4a461b Author: Alan Garny Date: Tue Jan 15 16:15:30 2019 +1300 Merge branch 'master' into issue1801. commit 26f4a461be5cdeac6c116dc29906699e566afbfc Merge: 7f3aa82f0 30d0e1709 Author: Alan Garny Date: Tue Jan 15 15:30:09 2019 +1300 Some minor cleaning up. commit 30d0e1709278dabb0e711d0b878e8769359220a2 Author: Alan Garny Date: Tue Jan 15 15:09:23 2019 +1300 Some minor cleaning up. commit 57633a2f06bdbd419773154fe068e84361b7db08 Merge: cb3c9a02c 7f3aa82f0 Author: Alan Garny Date: Tue Jan 15 14:52:22 2019 +1300 Merge branch 'master' into issue1801. commit 7f3aa82f05fd63792a05a7afca14b94220ba1577 Merge: ee7db95e5 cab411350 Author: Alan Garny Date: Tue Jan 15 14:49:38 2019 +1300 Some minor cleaning up. commit cab4113501bd9e72a3703895b84ece8d42d61d82 Author: Alan Garny Date: Tue Jan 15 14:34:42 2019 +1300 Some minor cleaning up. commit cb3c9a02ca013a74183002e2e0c6650ccf208553 Author: Alan Garny Date: Mon Jan 14 15:19:47 2019 +1300 Build LibGit2 (#1801). commit 62fc7b2a3c42f06cc703a0611519edfad697096b Author: Alan Garny Date: Mon Jan 14 15:17:42 2019 +1300 Only build LibGit2 (#1801). commit 039e89ef8c8b929b9cdd0562f116b84bcd1e97da Author: Alan Garny Date: Mon Jan 14 15:15:43 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit 37bf3986f1d04bf2e3e3a45ff40e4362e997d214 Author: Alan Garny Date: Mon Jan 14 14:52:10 2019 +1300 Only build OpenSSL (#1801). commit 91265a3281d9266fb19131ab1a2d2f91fa8b0b9e Author: Alan Garny Date: Mon Jan 14 14:51:01 2019 +1300 Make sure OpenSSL 1.1.1 can be found on Windows (#1801). commit 49e90fe203f8449b20a22026c6f5681268f9bcb0 Author: Alan Garny Date: Mon Jan 14 10:31:46 2019 +1300 Some minor cleaning up. commit 5f555ab722cc57b5cea443cf805641b55e1d81dd Author: Alan Garny Date: Fri Jan 11 15:36:20 2019 +1300 Only build LibGit2 (#1801). commit 5ed535a46a63e47b4c38fcf6a2a9a5f497073c6d Author: Alan Garny Date: Fri Jan 11 15:33:04 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit c47c404b4b8eed6bf2c79061e4b9addbf60601f0 Author: Alan Garny Date: Fri Jan 11 15:09:14 2019 +1300 Only build OpenSSL (#1801). commit 58fa365f5680fd03b4d31470f60c27ca4b50870d Author: Alan Garny Date: Fri Jan 11 15:05:40 2019 +1300 Build LibGit2 (#1801). commit 72aa82e0c769e4c9e8d9577106da3e9f4e8417dc Author: Alan Garny Date: Fri Jan 11 15:04:12 2019 +1300 OpenSSL: binaries for version 1.1.1a (#1801). commit e066fd2059e75243ae3204b0bf5cf6bec0a865dd Author: Alan Garny Date: Fri Jan 11 14:32:12 2019 +1300 OpenSSL: upgraded to version 1.1.1a (#1801). commit 46373bd15ee721ba99fd6ccfdc929b5eab171393 Merge: 47de48076 ee7db95e5 Author: Alan Garny Date: Fri Jan 11 14:24:54 2019 +1300 Merge branch 'master' into issue1801. commit ee7db95e5567ff8d2f7bd6aaa81c2015d2e571ec Merge: 3375ee44a faa40cb12 Author: Alan Garny Date: Fri Jan 11 14:00:36 2019 +1300 Mesa: upgraded to version 18.2.8 (closes #1945). commit faa40cb12fb0726c7676bde5254e24aecfbe6f79 Author: Alan Garny Date: Fri Jan 11 13:42:09 2019 +1300 Slight update to our downloads page (#1945). commit c4af566ffd88c0424d0a535f1850ff5dcce250f2 Author: Alan Garny Date: Fri Jan 11 13:41:00 2019 +1300 Revert "Build Mesa (on Linux) (#1945)." This reverts commit 7aece31384ceb30a6a6427bff4c735043ef0bda0. commit 7143490296e771ce01795b6bd29a66cf411373b1 Author: Alan Garny Date: Fri Jan 11 13:40:37 2019 +1300 Mesa: binary for version 18.2.8 (#1945). commit 0485a6ecbb49dca487680b9cdefe0f393f0e1dcf Author: Alan Garny Date: Fri Jan 11 13:34:07 2019 +1300 Mesa: upgraded to version 18.2.8 (#1945). commit 7aece31384ceb30a6a6427bff4c735043ef0bda0 Author: Alan Garny Date: Fri Jan 11 13:33:29 2019 +1300 Build Mesa (on Linux) (#1945). commit 3375ee44a4ea264d61cfebe86b5a5acadf6e1350 Merge: 94e9a3ee9 d54d4e355 Author: Alan Garny Date: Fri Jan 11 13:14:50 2019 +1300 Satisfy Xcode analysis. commit d54d4e3559f3b0e2f606ed771cd6bd69cb960d92 Author: Alan Garny Date: Fri Jan 11 12:29:31 2019 +1300 PMR window: make Xcode happy. Indeed, it was complaining that `item` could be null, even though it couldn’t be in practice. Still, better be safe than sorry. commit 89020ecc48bd2fa4fc0c7fbb8679c45f460e0368 Author: Alan Garny Date: Fri Jan 11 12:25:33 2019 +1300 Data store: make Xcode happy. Indeed, it was complaining about `hierarchyItem` being potentially null, which technically speaking could have happened indeed, even though it never does. commit 7167821d5312634569b98c9073cdce5f30dc814f Author: Alan Garny Date: Fri Jan 11 12:06:18 2019 +1300 Some minor cleaning up and also make Xcode happy. Indeed, it was complaining about odeSolverInterface being potentially null in our for() loop. commit 06e4e523be9e19f6c76040530bcd9ce62debe710 Author: Alan Garny Date: Fri Jan 11 12:00:16 2019 +1300 Simulation Experiment view: keep Xcode happy. commit f71c3d063eb8f49f411843bfc89cf32d61d42c71 Author: Alan Garny Date: Fri Jan 11 11:33:05 2019 +1300 Main window: keep Xcode happy. See https://stackoverflow.com/a/14901611 for some background about this. commit 80dc9fc0c18b6bbccf50ea5229d8e424c767e4c1 Author: Alan Garny Date: Fri Jan 11 10:54:23 2019 +1300 PMR Web Service: slight reworking of our code to please Xcode. Indeed, although it never happens, Xcode considers that there is a potential risk of memory leak with `workspace` in PmrWebService::workspaceInformationResponse(). So, better please Xcode and be safe rather potentially sorry. commit 3b974e35dfbbef34a9198ac8d43cfa3bf6279d0f Author: Alan Garny Date: Fri Jan 11 10:25:43 2019 +1300 File Organiser window: slightly reworked the loading/saving of settings. Indeed, we used to track the index of an item’s parent item, but we don’t actually need to do that. This also means that we had to put a safeguard in FileOrganiserWindowModel::decodeHierarchyData() since otherwise OpenCOR would crash if it was to retrieve some settings that were stored using the old format. In the end, that safeguard is a good thing to have no matter what, so that’s fine. commit 3c77afc71b5888287220ee7bc8252a6cf7ffe8d3 Author: Alan Garny Date: Fri Jan 11 10:17:04 2019 +1300 Central widget: slight reworking to please Xcode. It was indeed complaining about `mode` being potentially null. commit 124e80bf55fb8f92a3f6ec5a03e2f652b97a401b Author: Alan Garny Date: Fri Jan 11 10:02:18 2019 +1300 File Organiser window: reworked the code a bit to please Xcode. It’s because we used to test pParentItem, so Xcode would think that there could be a memory leak for fileItem (and, I imagine, folderItem too, although Xcode didn’t report anything about it). commit d0f143b6e6f35aec27d177b68d152081e2abaaa8 Author: Alan Garny Date: Thu Jan 10 18:37:51 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than sorry! commit c5ad284fbf3db30cc1c8ef5434788ca616e44089 Author: Alan Garny Date: Thu Jan 10 18:33:37 2019 +1300 Some minor cleaning up. commit bd3345d0984248211ce93c8abd5f16eba4c9e712 Author: Alan Garny Date: Thu Jan 10 18:00:04 2019 +1300 Don't need this anymore. Note that this should not have been needed in the first place, so if the problem ever occurs again then we will need to find the cause of it rather than come with that kind of trick. commit d3bbcb6028e530b9418a1d6f04486835cbb11f4f Author: Alan Garny Date: Thu Jan 10 17:56:15 2019 +1300 Cleaned up some dodgy code. Thanks to Xcode’s analysis… commit ac371389e8284440387b202ec014220cb281f042 Author: Alan Garny Date: Thu Jan 10 17:48:41 2019 +1300 Some minor cleaning up. commit 1430ab0375da2e94a94768951ad5f3cac342f972 Author: Alan Garny Date: Thu Jan 10 17:25:58 2019 +1300 Added an updated comment re the style of TabBarWidget(). commit b6f5ab29bc5eb94c4a0b2c7206e9c3a365758dbe Author: Alan Garny Date: Thu Jan 10 17:25:27 2019 +1300 Fixed an issue reported by Xcode. It never caused any problems, but better be safe than sorry! commit 94e9a3ee91a01aec691236a282b1db147ea89e41 Merge: 081c89c93 a7259b2d2 Author: Alan Garny Date: Thu Jan 10 16:47:44 2019 +1300 Simplified our use of pEvent->modifiers(). commit a7259b2d2fe20f608db0898f974cdbded13ca800 Author: Alan Garny Date: Thu Jan 10 16:31:46 2019 +1300 Simplified our use of pEvent->modifiers(). Regarding EditorWidgetEditorWidget::keyPressEvent(), we should never have tested for Qt::Key_Tab since pressing it within a highlighted word should result in that word not being highlighted anymore. Similarly, pressing Qt::Key_Backtab on a non-highlighted word may result in it being highlighted. Otherwise, still in EditorWidgetEditorWidget::keyPressEvent(), we don’t need to test for the arrow keys anymore since we test for Qt::NoModifier and arrow keys rely on Qt::KeypadModifier. commit 081c89c937466069d295fbd4a28fc9fe4d41c2f0 Merge: c725de49c ecf8a5bc4 Author: Alan Garny Date: Thu Jan 10 11:47:23 2019 +1300 Graph Panel widget: fixed a small problem with the scale range of an axis in some cases (closes #1941). commit ecf8a5bc4ba6b4dcb6ce798f5f60595fa2494147 Author: Alan Garny Date: Thu Jan 10 11:26:48 2019 +1300 Slight updates to our downloads and what is new pages (#1941). commit 7e864458223bc3a46f3106fcd31c5a4e72f62b1c Author: Alan Garny Date: Thu Jan 10 11:13:18 2019 +1300 Replaced our remaining calls to qIsNull() with qFuzzyIsCompare(). When it comes to GraphPanelPlotWidget::optimizeAxis() (and our original call to qIsNull(pMin-pMax)), this is what was causing the problem reported in issue #1941. commit 193fd7d6eef4587b6ec11ee7e1024fec56758740 Author: Alan Garny Date: Thu Jan 10 11:04:43 2019 +1300 Replace some of our calls to qIsNull() with qFuzzyIsNull() or qFuzzyIsNull(). commit 2a09c0cb15dcb59e2e748e23c6a850c33861191f Author: Alan Garny Date: Thu Jan 10 10:51:38 2019 +1300 Some minor cleaning up. commit da1b9154d467ae6a5ab876d5b365688f69684636 Merge: d3638c2d7 c725de49c Author: David Brooks Date: Thu Jan 10 10:39:16 2019 +1300 Merge branch 'master' into pythonplugin commit c725de49cf029e182afaa9ced194205763520ca8 Merge: 4f69a99eb 2cdb6cb21 Author: Alan Garny Date: Wed Jan 9 18:43:21 2019 +1300 Make sure that FileManager::checkFiles() properly handles files that have been deleted. commit 2cdb6cb21dbb9037ec978b8dc6f5dfe802b2e7d7 Author: Alan Garny Date: Wed Jan 9 18:15:48 2019 +1300 Make sure that FileManager::checkFiles() properly handles files that have been deleted. commit 4f69a99eb648551fc935a0b6976518b0975160e6 Merge: 7a389dfd9 31fd029e2 Author: Alan Garny Date: Wed Jan 9 18:07:40 2019 +1300 Slight improvement to some of our test CellML files. commit 31fd029e298030c66255d929907dc96a41f09fdc Author: Alan Garny Date: Mon Jan 7 10:50:30 2019 +1300 Made our simple_dae_model.cellml really a DAE model. commit 2c6cfab8062a1da9105bf9f78b6f632dc6f95980 Author: Alan Garny Date: Mon Jan 7 10:17:36 2019 +1300 Slight cleaning up of our parabola_dae_model.cellml test file. commit 7a389dfd9ccf1abefcf031b13c49a77c403ba830 Author: Alan Garny Date: Fri Jan 4 19:53:01 2019 +1300 Some minor cleaning up. commit 30cd45793f5ba78727fb6d4e888c2ecb67ac8b0a Merge: c256dbb80 63c83b6e9 Author: Alan Garny Date: Fri Jan 4 19:02:33 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit 63c83b6e935aac1316ba92761d976f5732bc7500 Author: Alan Garny Date: Fri Jan 4 18:46:39 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit fca4fe752b32a76870a92f811cdf37b1f4a56d45 Author: Alan Garny Date: Fri Jan 4 16:37:16 2019 +1300 LLVM: satisfy gcc on Ubuntu 18.10. commit c256dbb805a5a11a9146beae53b51e846de036a2 Merge: a2bf47c09 8d246a5c1 Author: Alan Garny Date: Fri Jan 4 16:07:53 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit 8d246a5c1aec2a0a394241bcb79be2a4c353f329 Author: Alan Garny Date: Fri Jan 4 15:12:32 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit dad8d2374defafe4f23722075dea69e201492b01 Author: Alan Garny Date: Fri Jan 4 15:10:20 2019 +1300 CellML file runtime: make sure that CellML file errors are properly formatted. commit a2bf47c094f697b8c44276026f613f5b1b0a3d77 Merge: 1b7e6536c 168235ea7 Author: Alan Garny Date: Thu Jan 3 11:14:24 2019 +1300 Qwt: upgraded to version 6.1.4 (closes #1933). commit 168235ea766acb9eda2c87cde049593a5f03372a Author: Alan Garny Date: Thu Jan 3 10:57:51 2019 +1300 Slight update to our downloads page (#1933). commit 2d9127f689ea6dbd27b04dc0bcb7fa8015c5dc22 Author: Alan Garny Date: Thu Jan 3 10:53:25 2019 +1300 Revert "Only build our Qwt package (#1933)." This reverts commit 084f5f23b127ba1f8eeca236d349a4ee97920202. commit b6e09eaf689dae6ba2a1d5244418f5295d359a19 Author: Alan Garny Date: Thu Jan 3 10:53:07 2019 +1300 Qwt: binaries for version 6.1.4 (#1933). commit 55a96082a6a5bd285fcb30b7322b3705f9065b70 Author: Alan Garny Date: Thu Jan 3 10:26:57 2019 +1300 Qwt: upgraded to version 6.1.4 (#1933). commit 084f5f23b127ba1f8eeca236d349a4ee97920202 Author: Alan Garny Date: Thu Jan 3 10:25:00 2019 +1300 Only build our Qwt package (#1933). commit 1b7e6536c4ad2b47030dfdeb33a06a81008bd883 Merge: fac9d8b61 d3e8fb4a3 Author: Alan Garny Date: Sat Dec 22 14:14:46 2018 +1300 QScintilla: improved the build system (closes #1931). commit d3e8fb4a3dd76a3f54341e1b8c7df688b1234114 Author: Alan Garny Date: Sat Dec 22 13:25:11 2018 +1300 Some minor cleaning up. commit 88bbf546ea6818018849e5c8a4fb921edcb431a2 Author: Alan Garny Date: Sat Dec 22 12:49:51 2018 +1300 Some minor cleaning up. commit 780e92ff61e842853edc8254dd894c028babcf18 Author: Alan Garny Date: Sat Dec 22 12:40:58 2018 +1300 Some minor cleaning up. commit e11b63ffc880abcf1d9e09e4b6178a33d4499878 Author: Alan Garny Date: Sat Dec 22 11:28:03 2018 +1300 Some minor cleaning up. commit 2cbd4207c900951d28a39191da7f7f11ab8ae053 Author: Alan Garny Date: Sat Dec 22 11:11:15 2018 +1300 Some minor cleaning up. commit 261ac2be28d00ac4089f1b38cf88240fe4b6809b Author: Alan Garny Date: Sat Dec 22 10:18:48 2018 +1300 No need to define QSCINTILLA_DLL anymore (#1931). commit df3a5a2c607eea9394943769191215c26b7a38c6 Author: Alan Garny Date: Sat Dec 22 10:17:34 2018 +1300 Don't only build our QScintilla package. commit dd50324e9dce33555f57785b4b9721a1f549f829 Author: Alan Garny Date: Sat Dec 22 10:17:05 2018 +1300 QScintilla: new binaries for version 2.10.8 (#1931). commit dada31aaf57d9ff3d1729f61c7922497c60b5d51 Author: Alan Garny Date: Sat Dec 22 09:59:37 2018 +1300 Only build our QScintilla package. commit d7f276fdef7846369710dd80c879c949208b2052 Author: Alan Garny Date: Sat Dec 22 09:54:17 2018 +1300 Only build our QScintilla package. commit fac9d8b6183d547f5b1ed32047d2c6665523fe29 Merge: 52bb31285 b54a7049f Author: Alan Garny Date: Fri Dec 21 23:20:30 2018 +1300 SUNDIALS: upgraded to version 4.0.1 (closes #1929). commit b54a7049f2e054333aa6348b47e71bb019b15a31 Author: Alan Garny Date: Fri Dec 21 19:49:15 2018 +1300 Revert "Only build our SUNDIALS package (#1929)." This reverts commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e. commit 03cea5b128d04ae74e715ba5e5be4cc6dee51b4d Author: Alan Garny Date: Fri Dec 21 16:39:24 2018 +1300 Slight update to our downloads page (#1929). commit 0e467cea606b514edc78d76b092436e0d9f736a6 Author: Alan Garny Date: Fri Dec 21 16:38:15 2018 +1300 SUNDIALS: binaries for version 4.0.1 (#1929). commit 7e425b2320385666133a7770624f0cef625e600c Merge: cb4d56488 52bb31285 Author: Alan Garny Date: Fri Dec 21 16:33:36 2018 +1300 Merge branch 'master' into issue1929. commit 52bb312850376f8f70c3d5f7e9303f28bd3df2b1 Merge: 3ca47ac0f 1ad5d407c Author: Alan Garny Date: Fri Dec 21 16:32:51 2018 +1300 C++ improvements to the code (closes #1924). commit cb4d564880678f860b89ae70c25399f83fc644a0 Author: Alan Garny Date: Fri Dec 21 16:31:23 2018 +1300 SUNDIALS: upgraded to version 4.0.1 (#1929). commit 21cd0eccbedd1a3f1d2eabcbaeb1b9290ccd547e Author: Alan Garny Date: Fri Dec 21 16:27:54 2018 +1300 Only build our SUNDIALS package (#1929). commit 1ad5d407c92c2db834a68c4251e1cfb55f1245e6 Author: Alan Garny Date: Fri Dec 21 16:16:20 2018 +1300 Some minor cleaning up. Prevent any possible ambiguity. commit 3f62d24a21ad8bf9628a17922a41c4a9307b0d63 Author: Alan Garny Date: Fri Dec 21 15:50:38 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). Prevent a crash when: - Opening a file in OpenCOR; - Deleting the file; and - Going back to OpenCOR and agreeing to closing the file. commit 3ca47ac0f85d7fc5352e0df2ee3ce24635388820 Merge: a5ec7aeee 21a160179 Author: Alan Garny Date: Fri Dec 21 14:44:31 2018 +1300 CellML Text view: improved Unicode support (closes #1926). commit 21a1601798f33ccf9fb1a35ab5cdf7ba448bd258 Author: Alan Garny Date: Fri Dec 21 14:11:57 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer (#1926). commit 507781cb78dada20180d669017db77267cff90ff Author: Alan Garny Date: Fri Dec 21 11:26:28 2018 +1300 Slight update to our what is new and downloads pages (#1926). commit 02c6e420d659471c5cbefdb98af9c512a728052f Author: Alan Garny Date: Fri Dec 21 11:11:51 2018 +1300 CellML Text viewer: fixed a problem with Unicode characters (#1926). commit 2b5f948342e80a1960e7428225d5a4fb90acbd81 Author: Alan Garny Date: Fri Dec 21 10:34:07 2018 +1300 CellML Text view: save time when updating our viewer by checking whether we are within a comment (#1926). commit 1831f686c9fa0fafb3e7bdbb9cf49a4ad67f7bcd Author: Alan Garny Date: Fri Dec 21 09:57:55 2018 +1300 Some minor cleaning up. commit 3942400730d1edd445f803a95e461db41c4b1f07 Author: Alan Garny Date: Fri Dec 21 09:24:36 2018 +1300 Some minor cleaning up. commit a712f9aa0254a55868f954d374c9d35d5cf2ca28 Author: Alan Garny Date: Fri Dec 21 09:23:59 2018 +1300 Some minor cleaning up. commit fee86ec3405eb8199776c2cde6e6f6d3b709a7ec Author: Alan Garny Date: Thu Dec 20 17:48:33 2018 +1300 Some minor cleaning up. commit 716b108d5ca68dd74789d3775fa71275cbcf984c Author: Alan Garny Date: Thu Dec 20 17:20:29 2018 +1300 CellML Text view: make sure that the styling is done before updating our viewer (#1926). commit 18f1e13b6e36469ae99053a8a120b47af8bc717e Author: Alan Garny Date: Thu Dec 20 10:50:13 2018 +1300 Some minor cleaning up. commit b824423fb0bcefc884429e9bc023437775489c4c Author: Alan Garny Date: Thu Dec 20 10:49:02 2018 +1300 Some minor cleaning up. commit a5ec7aeee9c6df6ca18fcec7757867a14f5f29ac Merge: 40acc0ab0 02dd839b5 Author: Alan Garny Date: Wed Dec 19 16:56:37 2018 +1300 C++ improvements to the code (closes #1924). commit 02dd839b585d9f47222f85e20e176c9da942975b Author: Alan Garny Date: Wed Dec 19 16:38:19 2018 +1300 C++: replaced our use of for() loops with iterators with that of range-based for() loops whenever possible (#1924). commit d5640ea6527dbee5e98ffa218509de160a76b70f Author: Alan Garny Date: Wed Dec 19 16:18:19 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). commit a82ba81a7008b4d6bb01b55cf24819b4c3dc10e3 Author: Alan Garny Date: Wed Dec 19 16:16:59 2018 +1300 C++: replaced our use of Qt foreach() loops with that of range-based for() loops (#1924). commit 47de480761d6aaa99114db579155d49cb7473753 Merge: db36f196e 40acc0ab0 Author: Alan Garny Date: Tue Dec 18 16:33:09 2018 +1300 Merge branch 'master' into issue1801. commit 81c0c8614c3cd9a299c2a2b61a568f2e4a121aa4 Merge: a914d15bb 40acc0ab0 Author: Alan Garny Date: Tue Dec 18 16:29:22 2018 +1300 Merge remote-tracking branch 'opencor/master' into issue1845. commit d3638c2d7d40b591dd6e66a855e0b6962ba66812 Author: David Brooks Date: Tue Dec 18 13:07:21 2018 +1300 Upgrade SciPy to version 1.1.0. commit 6c0fae07a40e244054985728384a0282b88b0609 Merge: 1adb1399d 40acc0ab0 Author: David Brooks Date: Tue Dec 18 11:14:05 2018 +1300 Merge branch 'master' into pythonplugin commit 1adb1399d504e77d28d5dcace645466556bc2ffc Author: David Brooks Date: Tue Dec 18 11:12:02 2018 +1300 Python: fix bad import with `matplotlib` under `PythonQt`. commit 40acc0ab0a6e26114f8c5c32f8b890c56d1d360c Merge: 98682ceda 4a505b9a8 Author: Alan Garny Date: Mon Dec 17 18:19:46 2018 +1300 SUNDIALS: upgraded to version 4.0.0 (closes #1919). commit 4a505b9a848312d512fd1e703d6c2bc8d2538102 Author: Alan Garny Date: Mon Dec 17 17:55:30 2018 +1300 CVODES and KINSOL: updated our code for version 4.0.0 of SUNDIALS (#1919). commit 9ed36cee7f9a834e2d99b8b8cfba9f26a1732e86 Author: Alan Garny Date: Mon Dec 17 16:35:51 2018 +1300 Some minor cleaning up. commit 4e9ff4bf021d55b806c4b1981c1c2f82f3ee61d9 Author: Alan Garny Date: Mon Dec 17 14:39:04 2018 +1300 Slight update to our downloads page (#1919). commit c3001dc7f8f42b907148e41c9a2902eec6f296ac Author: Alan Garny Date: Mon Dec 17 14:36:42 2018 +1300 Revert "Only build our SUNDIALS package (#1919)." This reverts commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce. commit 09335dc44c61f928aaaa49e8f513cfe6dd54cfec Author: Alan Garny Date: Mon Dec 17 14:31:41 2018 +1300 SUNDIALS: binaries for version 4.0.0 (#1919). commit 8e881b68f83db6f7e9a376e15d9e90fa45360085 Author: Alan Garny Date: Mon Dec 17 14:26:07 2018 +1300 SUNDIALS: upgraded to version 4.0.0 (#1919). commit 1d6f5b491f3223816e80e1c37f9556be5cfbdbce Author: Alan Garny Date: Mon Dec 17 13:58:00 2018 +1300 Only build our SUNDIALS package (#1919). commit 98682ceda1c86f0393b99e17ed49f7a7b9a87b16 Merge: e48574785 2f6a1e355 Author: Alan Garny Date: Mon Dec 17 13:56:10 2018 +1300 Mesa: upgraded to version 18.2.7 (closes #1918). commit 2f6a1e35579c4ee900292dbd26f7231d845dd885 Author: Alan Garny Date: Mon Dec 17 13:36:15 2018 +1300 Slight update to our downloads page (#1918). commit 6ae4001193e14665cd94c91784a02a1b92e0c088 Author: Alan Garny Date: Mon Dec 17 13:33:20 2018 +1300 Revert "Only build our Mesa package (#1918)." This reverts commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5. commit debefbd755ae0c1812c2160630ade20ec359de55 Author: Alan Garny Date: Mon Dec 17 13:33:01 2018 +1300 Mesa: binary for version 18.2.7 (#1918). commit 76d5ce4a976b62c163ea3ddc46fc4a8a798a3079 Author: Alan Garny Date: Mon Dec 17 13:27:36 2018 +1300 Mesa: upgraded to version 18.2.7 (#1918). commit 0a2a3d437a2bd3719c74a3b239a7b4590393eee5 Author: Alan Garny Date: Mon Dec 17 13:26:45 2018 +1300 Only build our Mesa package (#1918). commit e4857478563da09c51963f35a6dd37c27fd7eba3 Merge: 5ee22f8d5 8283fae19 Author: Alan Garny Date: Mon Dec 17 13:24:27 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 (closes #1917). commit 8283fae19850c34139a941fd21abf0908946bca6 Author: Alan Garny Date: Mon Dec 17 13:07:31 2018 +1300 LLVM+Clang: Windows binaries for version 7.0.1 (#1917). commit e4d05e1257b3e8b793f212cf0bc35fa0fa3d8c2b Author: Alan Garny Date: Mon Dec 17 11:26:00 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 (#1917). commit 8c00d626e9e86afba465df29813e5150a58c8768 Author: Alan Garny Date: Mon Dec 17 11:18:37 2018 +1300 LLVM+Clang: Linux binary for version 7.0.1 (#1917). commit bd6f8c4f1c5316f7ae960bea2b1aa891446e40bf Author: Alan Garny Date: Mon Dec 17 10:54:48 2018 +1300 Slight update to our downloads page (#1917). commit ff9ba6a506339b822df9e184fd99195d094a242a Author: Alan Garny Date: Mon Dec 17 10:39:26 2018 +1300 Revert "Only build our LLVM+Clang package (#1917)." This reverts commit 13153533b6de8c9a7288ee767012f1b7528fa6ca. commit 2665d65b1ec3a75a1ca844b101964b01572cc32d Author: Alan Garny Date: Mon Dec 17 10:39:05 2018 +1300 LLVM+Clang: macOS binary for version 7.0.1 (#1917). commit 614fba4f68f5042d860d7400d85a2b489c7f564a Author: Alan Garny Date: Mon Dec 17 09:37:10 2018 +1300 LLVM+Clang: upgraded to version 7.0.1 (#1917). commit 13153533b6de8c9a7288ee767012f1b7528fa6ca Author: Alan Garny Date: Mon Dec 17 09:16:46 2018 +1300 Only build our LLVM+Clang package (#1917). commit a914d15bb79d6902c18d56b6ab2e84a89c93e1f8 Merge: ca8b1e807 5ee22f8d5 Author: Alan Garny Date: Sat Dec 15 12:48:31 2018 +1300 Merge branch 'master' into issue1845. commit 5ee22f8d50015d7b50b51cd63dc80be34ee800eb Merge: 5ea5974a0 9d05b90c2 Author: Alan Garny Date: Sat Dec 15 12:45:30 2018 +1300 Qt: upgraded to version 5.12.0 (closes #1910). commit 9d05b90c23e8e47c54ed4c040a2f24da6151e47f Author: Alan Garny Date: Sat Dec 15 11:47:32 2018 +1300 Some minor cleaning up (#1910). Not only that, but it prevents some compilation errors on Windows using Qt 5.12.0 LTS: [4/19] Performing update step for 'developerDocumentationBuild' Current branch master is up to date. [5/19] Performing update step for 'userDocumentationBuild' Current branch master is up to date. [6/19] Building CXX object src\plugins\miscellaneous\Compiler\CMakeFiles\Compiler_tests.dir ests ests.cpp.obj FAILED: src/plugins/miscellaneous/Compiler/CMakeFiles/Compiler_tests.dir/tests/t ests.cpp.obj D:/Programming/OpenCOR/build/clcachewrapper C:\PROGRA~2\MICROS~2.0\VCinmd64+ echo 'All good on macOS!' All good on macOS! + exit 0 [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@b671c36[nodeId=MDEwOlJlcG9zaXRvcnk5OTU3NjY3,description=OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.,homepage=https://opencor.ws/,name=opencor,fork=false,archived=false,size=176097,milestones={},language=C++,commits={},source=,parent=,isTemplate=,url=https://api.github.com/repos/opencor/opencor,id=9957667,nodeId=,createdAt=2013-05-09T11:07:58Z,updatedAt=2020-10-11T23:37:46Z]] (sha:73dc874) with context:OpenCOR_macOS/Slave=Mac10.12.3_OpenCOR Setting commit status on GitHub for https://github.com/opencor/opencor/commit/73dc874228caa227f4a552084e75900f925d5ce4 Finished: SUCCESS