Started by upstream project "OpenCOR_Linux" build number 996
originally caused by:
GitHub pull request #2282 of commit 3ef762b554ff6242ea2c560433b43904ddb98732, no merge conflicts.
Running as SYSTEM
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49
No credentials specified
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/opencor/opencor.git # timeout=10
Fetching upstream changes from https://github.com/opencor/opencor.git
> git --version # timeout=10
> git fetch --tags --progress -- https://github.com/opencor/opencor.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10
JENKINS-19022: warning: possible memory leak due to Git plugin usage; see: https://wiki.jenkins.io/display/JENKINS/Remove+Git+Plugin+BuildsByBranch+BuildData
Checking out Revision f41f6e31bb16b6009d2aad0f64f8c8340b811823 (refs/remotes/origin/pr/2282/merge)
> git config core.sparsecheckout # timeout=10
> git checkout -f f41f6e31bb16b6009d2aad0f64f8c8340b811823 # timeout=10
FATAL: Could not checkout f41f6e31bb16b6009d2aad0f64f8c8340b811823
hudson.plugins.git.GitException: Command "git checkout -f f41f6e31bb16b6009d2aad0f64f8c8340b811823" returned status code 128:
stdout:
stderr: fatal: reference is not a tree: f41f6e31bb16b6009d2aad0f64f8c8340b811823
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:2372)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.access$1000(CliGitAPIImpl.java:80)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$9.execute(CliGitAPIImpl.java:2681)
Also: hudson.remoting.Channel$CallSiteStackTrace: Remote call to Ubuntu_16.04_bioeng49
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1741)
at hudson.remoting.UserRequest$ExceptionResponse.retrieve(UserRequest.java:356)
at hudson.remoting.Channel.call(Channel.java:955)
at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.execute(RemoteGitImpl.java:146)
at sun.reflect.GeneratedMethodAccessor696.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.invoke(RemoteGitImpl.java:132)
at com.sun.proxy.$Proxy97.execute(Unknown Source)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1195)
at hudson.scm.SCM.checkout(SCM.java:505)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1205)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:574)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
at hudson.model.Run.execute(Run.java:1853)
at hudson.matrix.MatrixRun.run(MatrixRun.java:153)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:427)
Caused: hudson.plugins.git.GitException: Could not checkout f41f6e31bb16b6009d2aad0f64f8c8340b811823
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$9.execute(CliGitAPIImpl.java:2705)
at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:161)
at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:154)
at hudson.remoting.UserRequest.perform(UserRequest.java:211)
at hudson.remoting.UserRequest.perform(UserRequest.java:54)
at hudson.remoting.Request$2.run(Request.java:369)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.lang.Thread.run(Thread.java:834)
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@5222f435[description=OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.,homepage=https://opencor.ws/,name=opencor,fork=false,archived=false,size=174084,milestones={},language=C++,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 16 Jan 2020 01:12:50 GMT], ETag=[W/"80f4e05af7f40403e4a60723f34c1ce6"], Last-Modified=[Wed, 15 Jan 2020 22:02:39 GMT], OkHttp-Received-Millis=[1579137170317], OkHttp-Response-Source=[CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1579137169956], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[B26C:0A50:72334:81797:5E1FB891], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4960], X-RateLimit-Reset=[1579140746], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/opencor/opencor,id=9957667]] (sha:f41f6e3) with context:OpenCOR_Linux/Slave=Ubuntu_16.04_bioeng49
Setting commit status on GitHub for https://github.com/opencor/opencor/commit/f41f6e31bb16b6009d2aad0f64f8c8340b811823
Finished: FAILURE
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