Started by upstream project "OpenCOR_Linux" build number 590
originally caused by:
 GitHub pull request #1922 of commit c3001dc7f8f42b907148e41c9a2902eec6f296ac, no merge conflicts.
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/opencor/opencor.git # timeout=10
Fetching upstream changes from https://github.com/opencor/opencor.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/opencor/opencor.git +refs/pull/*:refs/remotes/origin/pr/*
JENKINS-19022: warning: possible memory leak due to Git plugin usage; see: https://wiki.jenkins-ci.org/display/JENKINS/Remove+Git+Plugin+BuildsByBranch+BuildData
Checking out Revision ce13d8b335f7d98f662bfff372ebab12e1638bcb (refs/remotes/origin/pr/1922/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f ce13d8b335f7d98f662bfff372ebab12e1638bcb
Commit message: "Merge c3001dc7f8f42b907148e41c9a2902eec6f296ac into 98682ceda1c86f0393b99e17ed49f7a7b9a87b16"
 > git rev-list --no-walk 9c9786c1860249aaed0d2f8fbba631a334e92687 # timeout=10
[Ubuntu_16.04_bioeng49] $ /bin/sh -xe /tmp/jenkins1018871532081943952.sh
+ export PATH=/opt/Qt/5.12.0/gcc_64/bin:/opt/Qt/5.6/gcc_64/bin:/opt/Qt/5.6/gcc_64/bin:/opt/Qt/5.9.7/gcc_64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ ./clean
Cleaning OpenCOR...
All done!
+ cd build
+ cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DENABLE_SAMPLE_PLUGINS=ON -DENABLE_TEST_PLUGINS=ON -DENABLE_TESTS=ON ..
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Building a release version of OpenCOR using Qt 5.12.0...
Retrieving the 'SUNDIALS' package...
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-- Configuring done
-- Generating done
-- Build files have been written to: /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build
+ exitCode=0
+ [ 0 -ne 0 ]
+ ninja
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[620/1611] Generating src/moc_standardsupportplugin.cpp
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[629/1611] Generating qrc_tests.cpp
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[631/1611] Building CXX object src/plugins/support/StandardSupport/CMakeFiles/StandardSupportPlugin.dir/src/moc_standardsupportplugin.cpp.o
[632/1611] Linking CXX shared library src/plugins/solver/SecondOrderRungeKuttaSolver/libSecondOrderRungeKuttaSolver.so
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[660/1611] Building CXX object src/plugins/thirdParty/CellMLAPI/CMakeFiles/CellMLAPI_tests.dir/tests/moc_tests.cpp.o
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[662/1611] Building CXX object src/plugins/thirdParty/CellMLAPI/CMakeFiles/CellMLAPI_tests.dir/qrc_tests.cpp.o
[663/1611] Building CXX object src/plugins/thirdParty/libBioSignalML/CMakeFiles/libBioSignalMLPlugin.dir/src/libbiosignalmlplugin.cpp.o
[664/1611] Linking CXX executable src/plugins/support/ZIPSupport/ZIPSupport_tests
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[673/1611] Generating src/moc_biosignalmldatastoreexporter.cpp
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[675/1611] Building CXX object src/plugins/thirdParty/libBioSignalML/CMakeFiles/libBioSignalML_tests.dir/tests/moc_tests.cpp.o
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[680/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/__/__/datastoreinterface.cpp.o
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[686/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/src/biosignalmldatastoredialog.cpp.o
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[689/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/src/biosignalmldatastoreplugin.cpp.o
[690/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/src/moc_biosignalmldatastoreplugin.cpp.o
[691/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/src/moc_biosignalmldatastoreexporter.cpp.o
[692/1611] Building CXX object src/plugins/dataStore/BioSignalMLDataStore/CMakeFiles/BioSignalMLDataStorePlugin.dir/src/moc_biosignalmldatastoredialog.cpp.o
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[695/1611] Building CXX object src/plugins/thirdParty/libBioSignalML/CMakeFiles/libBioSignalML_tests.dir/src/libbiosignalmlplugin.cpp.o
[696/1611] Generating src/moc_libgit2plugin.cpp
[697/1611] Building CXX object src/plugins/thirdParty/libgit2/CMakeFiles/libgit2Plugin.dir/__/__/plugininfo.cpp.o
[698/1611] Building CXX object src/plugins/thirdParty/libgit2/CMakeFiles/libgit2Plugin.dir/src/moc_libgit2plugin.cpp.o
[699/1611] Building CXX object src/plugins/thirdParty/libgit2/CMakeFiles/libgit2Plugin.dir/src/libgit2plugin.cpp.o
[700/1611] Linking CXX executable src/plugins/thirdParty/libBioSignalML/libBioSignalML_tests
[701/1611] Generating src/moc_libnumlplugin.cpp
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[712/1611] Linking CXX shared library src/plugins/dataStore/BioSignalMLDataStore/libBioSignalMLDataStore.so
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[722/1611] Building CXX object src/plugins/thirdParty/libSEDML/CMakeFiles/libSEDML_tests.dir/__/__/plugininfo.cpp.o
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[728/1611] Building CXX object src/plugins/thirdParty/libSEDML/CMakeFiles/libSEDML_tests.dir/tests/moc_tests.cpp.o
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[735/1611] Linking CXX shared library src/plugins/thirdParty/libSEDML/liblibSEDML.so
[736/1611] Generating src/moc_llvmclangplugin.cpp
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[739/1611] Linking CXX shared library src/plugins/thirdParty/LibXDiff/libLibXDiff.so
[740/1611] Generating src/moc_oauthplugin.cpp
[741/1611] Building CXX object src/plugins/thirdParty/LLVMClang/CMakeFiles/LLVMClangPlugin.dir/src/llvmclangplugin.cpp.o
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[743/1611] Building CXX object src/plugins/thirdParty/OAuth/CMakeFiles/OAuthPlugin.dir/__/__/plugininfo.cpp.o
[744/1611] Building CXX object src/plugins/thirdParty/OAuth/CMakeFiles/OAuthPlugin.dir/src/moc_oauthplugin.cpp.o
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[747/1611] Generating src/moc_compilerengine.cpp
[748/1611] Linking CXX shared library src/plugins/thirdParty/OAuth/libOAuth.so
[749/1611] Generating ../../../../Compiler_fr.qm
[750/1611] Generating qrc_Compiler_i18n.cpp
[751/1611] Generating src/moc_compilerplugin.cpp
[752/1611] Generating tests/moc_tests.cpp
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[775/1611] Building CXX object src/plugins/thirdParty/QScintilla/CMakeFiles/QScintillaPlugin.dir/src/moc_qscintillaplugin.cpp.o
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[782/1611] Building CXX object src/plugins/support/QScintillaSupport/CMakeFiles/QScintillaSupportPlugin.dir/src/qscintillasupportplugin.cpp.o
[783/1611] Building CXX object src/plugins/support/QScintillaSupport/CMakeFiles/QScintillaSupportPlugin.dir/src/qscintillawidget.cpp.o
[784/1611] Linking CXX shared library src/plugins/support/QScintillaSupport/libQScintillaSupport.so
[785/1611] Generating src/moc_qwtplugin.cpp
[786/1611] Building CXX object src/plugins/thirdParty/Qwt/CMakeFiles/QwtPlugin.dir/__/__/plugininfo.cpp.o
[787/1611] Building CXX object src/plugins/thirdParty/Qwt/CMakeFiles/QwtPlugin.dir/src/qwtplugin.cpp.o
[788/1611] Building CXX object src/plugins/thirdParty/Qwt/CMakeFiles/QwtPlugin.dir/src/moc_qwtplugin.cpp.o
[789/1611] Linking CXX shared library src/plugins/thirdParty/Qwt/libQwt.so
[790/1611] Generating src/moc_sundialsplugin.cpp
[791/1611] Building CXX object src/plugins/thirdParty/SUNDIALS/CMakeFiles/SUNDIALSPlugin.dir/__/__/plugininfo.cpp.o
[792/1611] Building CXX object src/plugins/thirdParty/SUNDIALS/CMakeFiles/SUNDIALSPlugin.dir/src/moc_sundialsplugin.cpp.o
[793/1611] Building CXX object src/plugins/thirdParty/SUNDIALS/CMakeFiles/SUNDIALSPlugin.dir/src/sundialsplugin.cpp.o
[794/1611] Linking CXX shared library src/plugins/thirdParty/SUNDIALS/libSUNDIALS.so
[795/1611] Generating __/__/moc_solverinterface.cpp
[796/1611] Building CXX object src/plugins/miscellaneous/Compiler/CMakeFiles/CompilerPlugin.dir/src/compilerengine.cpp.o
[797/1611] Building CXX object src/plugins/miscellaneous/Compiler/CMakeFiles/Compiler_tests.dir/src/compilerengine.cpp.o
[798/1611] Generating src/moc_cvodesolver.cpp
[799/1611] Generating src/moc_cvodesolverplugin.cpp
[800/1611] Generating ../../../../CVODESolver_fr.qm
[801/1611] Generating qrc_CVODESolver_i18n.cpp
[802/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/__/__/i18ninterface.cpp.o
[803/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/__/__/plugininfo.cpp.o
[804/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/__/__/solverinterface.cpp.o
[805/1611] Linking CXX shared library src/plugins/miscellaneous/Compiler/libCompiler.so
[806/1611] Linking CXX executable src/plugins/miscellaneous/Compiler/Compiler_tests
[807/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/__/__/moc_solverinterface.cpp.o
[808/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/qrc_CVODESolver_i18n.cpp.o
[809/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/src/cvodesolver.cpp.o
FAILED: src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/src/cvodesolver.cpp.o 
/usr/local/bin/ccache /usr/bin/c++  -DCVODESolverPlugin_EXPORTS -DCVODESolver_PLUGIN -DENABLE_SAMPLE_PLUGINS -DENABLE_TEST_PLUGINS -DQT_CORE_LIB -DQT_DEPRECATED_WARNINGS -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUNICODE -DUSE_PREBUILT_QTWEBKIT_PACKAGE -Isrc/plugins/solver/CVODESolver -I../src/plugins/solver/CVODESolver -I../src/3rdparty/diff_match_patch/src -I../src -I../src/misc -I../src/plugins -I../src/plugins/miscellaneous/Core/src -I../src/3rdparty/QtSingleApplication/src -I../src/plugins/thirdParty/zlib/ext/include -I../src/plugins/thirdParty/zlib/src -Isrc/plugins/thirdParty/zlib -I../src/plugins/thirdParty/OpenSSL/ext/include -I../src/plugins/thirdParty/OpenSSL/src -Isrc/plugins/thirdParty/OpenSSL -I../src/plugins/thirdParty/libSBML/ext/include -I../src/plugins/thirdParty/libSBML/src -Isrc/plugins/thirdParty/libSBML -I../src/plugins/thirdParty/Python/ext/include -I../src/plugins/thirdParty/Python/src -Isrc/plugins/thirdParty/Python 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../src/plugins/solver/CVODESolver/src/cvodesolver.cpp
../src/plugins/solver/CVODESolver/src/cvodesolver.cpp: In member function ‘virtual void OpenCOR::CVODESolver::CvodeSolver::initialize(double, int, double*, double*, double*, double*, OpenCOR::Solver::OdeSolver::ComputeRatesFunction)’:
../src/plugins/solver/CVODESolver/src/cvodesolver.cpp:307:43: error: ‘CV_NEWTON’ was not declared in this scope
                           newtonIteration?CV_NEWTON:CV_FUNCTIONAL);
                                           ^
../src/plugins/solver/CVODESolver/src/cvodesolver.cpp:307:53: error: ‘CV_FUNCTIONAL’ was not declared in this scope
                           newtonIteration?CV_NEWTON:CV_FUNCTIONAL);
                                                     ^
../src/plugins/solver/CVODESolver/src/cvodesolver.cpp:342:74: error: too many arguments to function ‘_generic_SUNMatrix* SUNBandMatrix(sunindextype, sunindextype, sunindextype)’
                                     upperHalfBandwidth+lowerHalfBandwidth);
                                                                          ^
In file included from ../src/plugins/thirdParty/SUNDIALS/ext/include/sunlinsol/sunlinsol_band.h:44:0,
                 from ../src/plugins/solver/CVODESolver/src/cvodesolver.cpp:33:
../src/plugins/thirdParty/SUNDIALS/ext/include/sunmatrix/sunmatrix_band.h:248:27: note: declared here
 SUNDIALS_EXPORT SUNMatrix SUNBandMatrix(sunindextype N, sunindextype mu,
                           ^
[810/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/src/moc_cvodesolver.cpp.o
[811/1611] Building CXX object src/plugins/solver/CVODESolver/CMakeFiles/CVODESolverPlugin.dir/src/cvodesolverplugin.cpp.o
ninja: build stopped: subcommand failed.
Build step 'Execute shell' marked build as failure
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@64dcab42[description=OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.,homepage=http://www.opencor.ws/,name=opencor,fork=false,archived=false,size=168268,milestones={},language=C++,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Mon, 17 Dec 2018 01:38:14 GMT], ETag=[W/"19ebf0db92c78eb0638fd243b777896c"], Last-Modified=[Mon, 17 Dec 2018 00:56:13 GMT], OkHttp-Received-Millis=[1545010694290], OkHttp-Response-Source=[CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1545010693740], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[9614:4FEA:3405BF3:4185B73:5C16FE05], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4948], X-RateLimit-Reset=[1545013942], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/opencor/opencor,id=9957667]] (sha:ce13d8b) with context:OpenCOR_Linux/Slave=Ubuntu_16.04_bioeng49
Setting commit status on GitHub for https://github.com/opencor/opencor/commit/ce13d8b335f7d98f662bfff372ebab12e1638bcb
Finished: FAILURE