Changes

Summary

  1. Some minor cleaning up. (commit: f310edc) (details)
  2. Solver interface: don't have our methods return an int anymore. (commit: 8b87628) (details)
  3. Some minor cleaning up. (commit: fcacb8b) (details)
  4. CellML support: make sure that our computeComputedConstants() method can (commit: d08db66) (details)
  5. Some minor cleaning up. (commit: 9d6e944) (details)
  6. DAE models: consider them as ODE models that have one or several NLA (commit: 327c14e) (details)
  7. Some minor cleaning up. (commit: e699699) (details)
  8. CellML support: slight improvement to our computeVariables() method. (commit: 432967b) (details)
  9. Slight renaming of some test CellML files. (commit: 0a2272d) (details)
  10. Simulation support: slight improvements to our SimulationData class. (commit: bfd10c4) (details)
  11. Some minor cleaning up. (commit: abbeed5) (details)
  12. Some minor renaming. (commit: e060ffc) (details)
  13. Reordered the properties of our KinsolSolverUserData class. (commit: 809e6ab) (details)
  14. KINSOL solver: make sure that all our values are finite (#188 and #536). (commit: 93f1f0f) (details)
  15. Revert "KINSOL solver: make sure that all our values are finite (#188 (commit: 6604b26) (details)
  16. Simulation Experiment view: make sure that, from a SED-ML file, we can (commit: c45a847) (details)
  17. Added a couple of COMBINE archives that can be used to test DAE models (commit: 5c5066f) (details)
  18. Simulation Experiment view: don't reset our NLA solver when further (commit: 498553d) (details)
  19. Slight update to our known limitations page (#188 and #536). (commit: 6978e0f) (details)
  20. Prevent OpenCOR from crashing when a SED-ML file or COMBINE archive (commit: d13158d) (details)
  21. Slight updates to downloads and what is new pages (#188 and #536). (commit: eddad2f) (details)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
Commit 8b87628a8b99b82b8ac4fe3f48d98f2e9f110a3c by Alan Garny
Solver interface: don't have our methods return an int anymore.
Not quite sure why we ever did return an int in the first place.
Probably to mimic what the CellML API. Yet, there is no actual need for
it, not to mention that it results in code that is executed for nothing.
(commit: 8b87628)
The file was modified src/plugins/solverinterface.h (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.h (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
Commit d08db66e82f1262b4a6c1068a5384d3fe6cdf812 by Alan Garny
CellML support: make sure that our computeComputedConstants() method can
always be compiled.
Indeed, we couldn’t compile
[OpenCOR]/doc/developer/functionalTests/res/cellml/parabola_variant_dae_
model.cellml anymore. Now, all our functional and model files that
should be compilable are now so.
(commit: d08db66)
The file was modified src/plugins/solverinterface.h (diff)
The file was modified src/plugins/solverinterface.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.h (diff)
The file was modified src/plugins/support/SimulationSupport/src/simulation.cpp (diff)
The file was modified src/plugins/solver/IDASSolver/src/idassolver.cpp (diff)
The file was modified src/plugins/miscellaneous/Core/src/centralwidget.cpp (diff)
The file was modified src/plugins/editing/RawCellMLView/src/rawcellmlviewplugin.cpp (diff)
The file was modified src/plugins/editing/CellMLTextView/src/cellmltextviewplugin.cpp (diff)
The file was modified src/plugins/tools/CellMLTools/src/cellmltoolsplugin.cpp (diff)
Commit 327c14e524c585aeeec13995f19fca665a058294 by Alan Garny
DAE models: consider them as ODE models that have one or several NLA
systems to be solved (#188 and #536).
(commit: 327c14e)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.h (diff)
Commit 432967b9383a1d7869cd92973d05f6945369a28d by Alan Garny
CellML support: slight improvement to our computeVariables() method.
(commit: 432967b)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.h (diff)
The file was modified src/plugins/support/SimulationSupport/src/simulation.cpp (diff)
Commit 0a2272d6b18836da04c72c865216a8d3fb774068 by Alan Garny
Slight renaming of some test CellML files.
Also removed a CellML file that is not relevant anymore (since it’s not
actually an under constrained DAE model).
(commit: 0a2272d)
The file was modified doc/developer/functionalTests/index.html (diff)
The file was removeddoc/developer/functionalTests/res/cellml/overconstrained_ode_model.cellml
The file was removeddoc/developer/functionalTests/res/cellml/definite_integral_ode_model.cellml
The file was removeddoc/developer/functionalTests/res/cellml/underconstrained_ode_model.cellml
The file was removeddoc/developer/functionalTests/res/cellml/underconstrained_dae_model.cellml
The file was addeddoc/developer/functionalTests/res/cellml/underconstrained_model.cellml
The file was addeddoc/developer/functionalTests/res/cellml/definite_integral_model.cellml
The file was addeddoc/developer/functionalTests/res/cellml/overconstrained_model.cellml
The file was addeddoc/developer/functionalTests/res/cellml/unsuitably_constrained_model.cellml
The file was removeddoc/developer/functionalTests/res/cellml/unsuitably_constrained_ode_model.cellml
Commit bfd10c4517fd29351234bf138d79bfc4ba41d2c2 by Alan Garny
Simulation support: slight improvements to our SimulationData class.
(commit: bfd10c4)
The file was modified src/plugins/support/SimulationSupport/src/simulation.cpp (diff)
The file was modified src/plugins/support/SimulationSupport/src/simulation.h (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.cpp (diff)
The file was modified src/plugins/solverinterface.cpp (diff)
The file was modified src/plugins/support/CellMLSupport/src/cellmlfileruntime.h (diff)
The file was modified src/plugins/solver/IDASSolver/src/idassolver.cpp (diff)
The file was modified src/plugins/solverinterface.h (diff)
The file was modified src/plugins/support/SimulationSupport/src/simulationworker.cpp (diff)
The file was modified src/plugins/solver/IDASSolver/src/idassolver.h (diff)
Commit 809e6abcf549bdbbff0500871cab014a318c652e by Alan Garny
Reordered the properties of our KinsolSolverUserData class.
(commit: 809e6ab)
The file was modified src/plugins/solver/KINSOLSolver/src/kinsolsolver.h (diff)
The file was modified src/plugins/solver/KINSOLSolver/src/kinsolsolver.cpp (diff)
Commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5 by Alan Garny
KINSOL solver: make sure that all our values are finite (#188 and #536).
(commit: 93f1f0f)
The file was modified src/plugins/solver/KINSOLSolver/src/kinsolsolver.cpp (diff)
Commit 6604b265d1d061d9f79dab9101ab7e645613ed9d by Alan Garny
Revert "KINSOL solver: make sure that all our values are finite (#188
and #536)."
This reverts commit 93f1f0f67c8d6240a9b7eff480cf2439b6e81dd5.
(commit: 6604b26)
The file was modified src/plugins/solver/KINSOLSolver/src/kinsolsolver.cpp (diff)
Commit c45a847980959c5a500b314afe31782076ca779e by Alan Garny
Simulation Experiment view: make sure that, from a SED-ML file, we can
open a CellML file which path contains spaces.
(commit: c45a847)
The file was modified src/plugins/miscellaneous/Core/src/corecliutils.cpp (diff)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.cpp (diff)
Commit 5c5066f26ace98a373dfd39ddaa69e600cb28d86 by Alan Garny
Added a couple of COMBINE archives that can be used to test DAE models
(#188 and #536).
(commit: 5c5066f)
The file was addeddoc/developer/functionalTests/res/combine/fink_slepchenko_moraru_watras_schaff_loew_2000v2.omex
The file was modified doc/developer/functionalTests/index.html (diff)
The file was addeddoc/developer/functionalTests/res/combine/smith_chase_nokes_shaw_wake_2004.omex
Commit 498553d0f5f6a69b73d53ea711dbfff8126b5218 by Alan Garny
Simulation Experiment view: don't reset our NLA solver when further
running a simulation (#188 and #536).
(commit: 498553d)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.cpp (diff)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.h (diff)
Commit 6978e0f6260dafdefe93f75246c5fae6976a4b9f by Alan Garny
Slight update to our known limitations page (#188 and #536).
(commit: 6978e0f)
The file was modified doc/user/knownLimitations.html (diff)
Commit d13158dd160d09b21cfd1aec8a0e9f828a68235e by Alan Garny
Prevent OpenCOR from crashing when a SED-ML file or COMBINE archive
requires a solver that is not present.
(commit: d13158d)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.h (diff)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewinformationsolverswidget.cpp (diff)
The file was modified src/plugins/support/SimulationSupport/src/simulation.cpp (diff)
The file was modified src/plugins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.cpp (diff)
Commit eddad2ff3cd081514952c10b4ad710e35e0643c9 by Alan Garny
Slight updates to downloads and what is new pages (#188 and #536).
(commit: eddad2f)
The file was modified doc/user/whatIsNew.js (diff)
The file was modified doc/downloads/index.js (diff)