Started by upstream project "OpenCOR_Linux" build number 1147 originally caused by: GitHub pull request #2411 of commit d6fb84782899530d3dba038673def00d969cbc51, no merge conflicts. Running as SYSTEM Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49 The recommended git tool is: NONE No credentials specified > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/opencor/opencor.git # timeout=10 Fetching upstream changes from https://github.com/opencor/opencor.git > git --version # timeout=10 > git --version # 'git version 2.17.1' > git fetch --tags --progress -- https://github.com/opencor/opencor.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10 JENKINS-19022: warning: possible memory leak due to Git plugin usage; see: https://wiki.jenkins.io/display/JENKINS/Remove+Git+Plugin+BuildsByBranch+BuildData Checking out Revision b2abd3102383441a8d36255e9a034b9b8c2da591 (refs/remotes/origin/pr/2411/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f b2abd3102383441a8d36255e9a034b9b8c2da591 # timeout=10 Commit message: "Merge d6fb84782899530d3dba038673def00d969cbc51 into 5a13167dbd47e74e0941dbd65e6e387cff31c258" > git rev-list --no-walk 6e61ec2b59dd8cfcca68ecad5ac01b7a71e8c042 # timeout=10 [Ubuntu_16.04_bioeng49] $ /bin/sh -xe /tmp/jenkins14719302880366996471.sh + ls /usr/bin [ 2to3-2.7 411toppm 7z 7za 7zr a11y-profile-manager-indicator a2ping a2x a5booklet a5toa4 aa-enabled aa-exec aclocal aclocal-1.15 aconnect acpi_listen activity-log-manager acyclic add-apt-repository addpart addr2line adhocfilelist afm2afm afm2pl afm2tfm alacarte aleph allcm allec allneeded alsabat alsaloop alsamixer alsatplg alsaucm amidi amixer amstex amuFormat.sh animate animate-im6 animate-im6.q16 anytopnm apg apgbfm aplay aplaymidi apport-bug apport-cli apport-collect apport-unpack appres appstreamcli apropos apt apt-add-repository apt-cache apt-cdrom apt-config aptdcon apt-extracttemplates apt-ftparchive apt-get apt-key apt-mark apt-sortpkgs apturl apturl-gtk ar arara arch arecord arecordmidi arlatex arm2hpdl arping as asciidoc asciitopgm aseqdump aseqnet aspell aspell-import assistant asy at atktopbm atobm atq atril atril-previewer atril-thumbnailer atrm authorindex autoconf autoheader autoinst autom4te automake automake-1.15 automat-visualize3 autopoint autoreconf autoscan autosp autoupdate avahi-browse avahi-browse-domains avahi-publish avahi-publish-address avahi-publish-service avahi-resolve avahi-resolve-address avahi-resolve-host-name avahi-set-host-name awk b2sum baobab base32 base64 basename bashbug batch bbl2bib bbox bc bccmd bcomps bdftopcf bdftruncate bg5conv bg5latex bg5+latex bg5pdflatex bg5+pdflatex bib2gls bibdoiadd biber bibexport bibmradd bibtex bibtex8 bibtex.original bibtexu biburl2doi bibzbladd bioradtopgm bitmap bluemoon bluetoothctl bluetooth-sendto bluetooth-wizard bmptopnm bmptoppm bmtoa boltctl bootctl brltty-ctb brltty-trtxt brltty-ttb broadwayd browse brushtopbm bsd-from bsd-write btattach btmgmt btmon bugpoint buildbot-worker bundledoc busctl bwrap byobu byobu-config byobu-ctrl-a byobu-disable byobu-disable-prompt byobu-enable byobu-enable-prompt byobu-export byobu-janitor byobu-keybindings byobu-launch byobu-launcher byobu-launcher-install byobu-launcher-uninstall byobu-layout byobu-prompt byobu-quiet byobu-reconnect-sockets byobu-screen byobu-select-backend byobu-select-profile byobu-select-session byobu-shell byobu-silent byobu-status byobu-status-detail byobu-tmux byobu-ugraph byobu-ulevel c++ c89 c89-gcc c99 c99-gcc cabextract cachepic caja caja-autorun-software caja-connect-server caja-dropbox-autostart caja-file-management-properties cal calc_tickadj calendar calibrate_ppa callgrind_annotate callgrind_control canberra-gtk-play cancel captoinfo caribou-preferences catchsegv catman cautious-launcher cc ccache ccache-swig ccache-swig3.0 ccmake ccomps ccsm cd-create-profile cd-fix-profile cd-iccdump cd-it8 cef5conv cef5latex cef5pdflatex cefconv ceflatex cefpdflatex cefsconv 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convert-im6.q16 corelist cpack cpan cpan5.26-x86_64-linux-gnu cpio-filter cpp cpp-3.4 cpp-5 cpp-7 cpp-8 cpufreq-aperf cpufreq-info cpufreq-selector cpufreq-set crc32 c_rehash crontab cslatex csplain csplit ctags ctags.emacs25 ctail ctangle ctanify ctan-o-mat ctanupload ctest ctie ctstat cups-calibrate cupstestdsc cupstestppd curl curl-config cut cvt cweave db2dvi db2html db2pdf db2ps db2rtf dblatex dbus-cleanup-sockets dbus-daemon dbus-launch dbus-monitor dbus-run-session dbus-send dbus-update-activation-environment dbus-uuidgen dbwrap_tool dc dconf dconf-editor ddstdecode deallocvt debconf debconf-apt-progress debconf-communicate debconf-copydb debconf-escape debconf-gettextize debconf-set-selections debconf-show debconf-updatepo deb-systemd-helper deb-systemd-invoke dehtmldiff deja-dup delaunay delpart delv de-macro depythontex depythontex3 derb designer desktop-file-edit desktop-file-install desktop-file-validate detex devdump devnag deweb dfu-tool dh dh_auto_build dh_auto_clean dh_auto_configure dh_auto_install dh_autoreconf dh_autoreconf_clean dh_auto_test dh_autotools-dev_restoreconfig dh_autotools-dev_updateconfig dh_bash-completion dh_bugfiles dh_builddeb dh_clean dh_compress dh_doxygen dh_dwz dh_fixperms dh_gconf dh_gencontrol dh_icons dh_install dh_installcatalogs dh_installchangelogs dh_installcron dh_installdeb dh_installdebconf dh_installdirs dh_installdocs dh_installemacsen dh_installexamples dh_installgsettings dh_installifupdown dh_installinfo dh_installinit dh_installlogcheck dh_installlogrotate dh_installman dh_installmanpages dh_installmenu dh_installmime dh_installmodules dh_installpam dh_installppp dh_installsystemd dh_installtex dh_installudev dh_installwm dh_installxfonts dh_installxmlcatalogs dh_link dh_lintian dh_listpackages dh_makeshlibs dh_md5sums dh_missing dh_movefiles dh_numpy dh_numpy3 dh_perl dh_perl_openssl dh_prep dh_pypy dh_python2 dh_python3 dh_shlibdeps dh_sphinxdoc dh_strip dh_strip_nondeterminism dh_systemd_enable dh_systemd_start dh_testdir dh_testroot dh_ucf dh_update_autotools_config dh_usrlocal diadia diagtool diff diff3 diffimg diffstat dig dijkstra dircolors dirmngr dirmngr-client dirname dirsplit discover-config disdvi display display-im6 display-im6.q16 dm-tool docbook2dvi docbook2html docbook2man docbook2pdf docbook2ps docbook2rtf docbook2tex docbook2texi docbook2txt do-release-upgrade dos2unix dosepsbin dot dot2gxl dot_builtins dotlockfile dotty doxygen doxyindexer doxysearch.cgi dpkg dpkg-architecture dpkg-buildflags dpkg-buildpackage dpkg-checkbuilddeps dpkg-deb dpkg-distaddfile dpkg-divert dpkg-genbuildinfo dpkg-genchanges dpkg-gencontrol dpkg-gensymbols dpkg-log-summary dpkg-maintscript-helper dpkg-mergechangelogs dpkg-name dpkg-parsechangelog dpkg-query dpkg-scanpackages dpkg-scansources dpkg-shlibdeps dpkg-source dpkg-split dpkg-statoverride dpkg-trigger dpkg-vendor driverless dsymutil dt2dv dtxgen du dumpkeys dv2dt dvi2fax dvi2tty dviasm dvibook dviconcat dvicopy dvidvi dvigif dvihp dviinfox dvilj dvilj2p dvilj4 dvilj4l dvilj6 dvilualatex dviluatex dvipdf dvipdfm dvipdfmx dvipdft dvipng dvipos dvips dvired dviselect dvisvgm dvitodvi dvitomp dvitype dwp e2pall ebb ebong ebrowse ebrowse.emacs25 edgepaint edit editdiff editor editres eject elfedit emacs emacs25 emacs25-x emacsclient emacsclient.emacs25 empathy empathy-accounts empathy-debugger enc2xs encguess enchant enchant-lsmod engrampa env envsubst eog eom eplain eps2eps epsffit epspdf epspdftk epstopdf eptex eqn erb erb2.5 esc-m etags etags.emacs25 etex euptex eutp evince evince-previewer evince-thumbnailer ex exceltex expand expiry expr extconv extractbb extractres eyuvtoppm f2py f2py2.7 f2py3 f2py3.6 f77 f95 factor faillog faked-sysv faked-tcp fakeroot fakeroot-sysv fakeroot-tcp fallocate fc-cache fc-cat fc-list fc-match fc-pattern fc-query fc-scan fc-validate fdp feynmf ffmpegthumbnailer fiascotopnm fig4latex fi_info filan file file2brl file-rename file-roller filterdiff find find-all-symbols findhyph findrule fi_pingpong firefox fi_strerror fitstopnm fixcvsdiff fixdlsrps fixfmps fixpsditps fixpspps fix-qdf fixscribeps fixtpps fixwfwps fixwpps fixwwps flipdiff flock fmt fmtutil fmtutil-sys fmtutil-user fold fontinst fonttosfnt foo2ddst foo2ddst-wrapper foo2hbpl2 foo2hbpl2-wrapper foo2hiperc foo2hiperc-wrapper foo2hp foo2hp2600-wrapper foo2lava foo2lava-wrapper foo2oak foo2oak-wrapper foo2qpdl foo2qpdl-wrapper foo2slx foo2slx-wrapper foo2xqx foo2xqx-wrapper foo2zjs foo2zjs-icc2ps foo2zjs-pstops foo2zjs-wrapper foomatic-rip fragmaster free freetype-config from fstopgm ftp funzip futurize fwupdmgr g++ g3topbm g++-5 g++-7 g77 g77-3.4 g++-8 gamma4scanimage gapplication gatttool gawk gbklatex gbkpdflatex gc gcalccmd gcc gcc-3.4 gcc-5 gcc-7 gcc-8 gcc-ar gcc-ar-5 gcc-ar-7 gcc-ar-8 gccbug-3.4 gcc-nm gcc-nm-5 gcc-nm-7 gcc-nm-8 gcc-ranlib gcc-ranlib-5 gcc-ranlib-7 gcc-ranlib-8 gconf-merge-tree gconftool gconftool-2 gcore gcov gcov-3.4 gcov-5 gcov-7 gcov-8 gcov-dump gcov-dump-5 gcov-dump-7 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install-info install-menu install-printerdriver instmodsh intel_aubdump intel_audio_dump intel_backlight intel_bios_dumper intel_display_crc intel_display_poller intel_dp_compliance intel_dump_decode intel_error_decode intel_firmware_decode intel_forcewaked intel_framebuffer_dump intel_gem_info intel-gen4asm intel-gen4disasm intel_gpu_abrt intel_gpu_frequency intel-gpu-overlay intel_gpu_time intel_gpu_top intel_gtt intel_guc_logger intel_gvtg_test intel_infoframes intel_l3_parity intel_lid intel_opregion_decode intel_panel_fitter intel_perf_counters intel_reg intel_reg_checker intel_residency intel_stepping intel_vbt_decode intel-virtual-output intel_watermark interdiff ionice ipcmk ipcrm ipcs ipod-read-sysinfo-extended ipod-time-sync ippfind ipptool iptables-xml irb irb2.5 ischroot isdv4-serial-debugger isdv4-serial-inputattach isodump isoinfo isovfy ispell-wrapper itweb-settings jadetex jamo-normalize java javaws jexec jfmutil jfr jjs join jpegtopnm jpgicc js json_pp jw k5srvutil kadmin kanji-config-updmap kanji-config-updmap-sys kanji-config-updmap-user kanji-fontmap-creator kbdinfo kbxutil kdestroy keep-one-running kernel-install kerneloops-submit keyring keytool killall kinit klist kmodsign koi8rxterm komkindex kpasswd kpseaccess kpsepath kpsereadlink kpsestat kpsetool kpsewhere kpsewhich kpsexpand ksu kswitch ktutil kvno l2ping l2test l4p-tmpl lacheck lamed laptop-detect last lastb lastlog latex latex2man latex2nemeth latexdef latexdiff latexdiff-cvs latexdiff-fast latexdiff-git latexdiff-hg latexdiff-rcs latexdiff-svn latexdiff-vc latexfileversion latex-git-log latexindent latexmk latexpand latex-papersize latexrevise latex-wordcount lavadecode lcf lconvert ld ld64.lld ld.bfd ldd ld.gold ld.lld leaftoppm lefty less lessecho lessfile lesskey lesspipe lexgrog libnetcfg libpng12-config libpng-config libreoffice libtoolize libwacom-list-local-devices lily-glyph-commands lily-image-commands lily-rebuild-pdfs linguist link linkicc lintian lintian-info 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zeitgeist-datahub zenity zip zipcloak zipdetails zipgrep zipinfo zipnote zipsplit zjsdecode zlib-flate zsh + pip list /tmp/jenkins14719302880366996471.sh: 4: /tmp/jenkins14719302880366996471.sh: pip: not found Build step 'Execute shell' marked build as failure [Set GitHub commit status (universal)] ERROR on repos [GHRepository@da0298a[nodeId=MDEwOlJlcG9zaXRvcnk5OTU3NjY3,description=OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.,homepage=https://opencor.ws/,name=opencor,fork=false,archived=false,size=176097,milestones={},language=C++,commits={},source=,parent=,isTemplate=,url=https://api.github.com/repos/opencor/opencor,id=9957667,nodeId=,createdAt=2013-05-09T11:07:58Z,updatedAt=2020-10-11T23:37:46Z]] (sha:b2abd31) with context:OpenCOR_Linux/Slave=Ubuntu_16.04_bioeng49 Setting commit status on GitHub for https://github.com/opencor/opencor/commit/b2abd3102383441a8d36255e9a034b9b8c2da591 Finished: FAILURE